Query 009626
Match_columns 530
No_of_seqs 182 out of 1201
Neff 8.3
Searched_HMMs 13730
Date Mon Mar 25 09:24:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009626.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009626hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1p4ta_ f.4.1.1 (A:) Outer mem 26.5 77 0.0056 24.5 7.1 26 483-508 104-130 (155)
2 d2fnaa1 a.4.5.11 (A:284-356) H 22.9 41 0.003 23.3 3.8 36 92-130 21-56 (73)
3 d1g3pa2 b.37.1.1 (A:91-217) N- 18.3 12 0.0009 27.0 0.1 13 8-20 22-34 (127)
4 d1qjpa_ f.4.1.1 (A:) Outer mem 17.3 2.1E+02 0.015 21.8 8.1 26 483-508 117-143 (171)
5 d1x2ga1 d.224.1.3 (A:247-337) 8.6 2.4E+02 0.018 19.7 5.0 37 78-115 28-64 (91)
6 d1qj8a_ f.4.1.1 (A:) Outer mem 7.6 3.5E+02 0.026 20.1 6.1 26 483-508 103-129 (148)
7 d1vqza1 d.224.1.3 (A:242-329) 7.5 97 0.0071 21.9 2.2 49 78-130 28-76 (88)
8 d1j2oa1 g.39.1.3 (A:1-30) Rhom 6.5 66 0.0048 18.1 0.5 11 369-379 10-20 (30)
9 d2gcxa1 b.34.1.2 (A:1-75) Ferr 6.4 3.4E+02 0.025 18.1 4.7 33 117-152 21-53 (75)
10 d1qkla_ a.143.1.2 (A:) RPB6 {H 5.8 1.3E+02 0.0097 22.9 2.2 32 24-55 3-34 (127)
No 1
>d1p4ta_ f.4.1.1 (A:) Outer membrane protein NspA {Neisseria meningitidis [TaxId: 487]}
Probab=26.54 E-value=77 Score=24.48 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=21.2
Q ss_pred cCceeeeeEEEEEe-eCceEEEEEEEE
Q 009626 483 QSTRSSVGAGIVFP-TNLFRLEVNYCR 508 (530)
Q Consensus 483 ~~~~~s~G~Glr~~-tp~g~l~ldya~ 508 (530)
..+...+|+|+.|. ++...+++.|-|
T Consensus 104 ~~~~~~~g~G~~y~lt~n~~~~~eyry 130 (155)
T d1p4ta_ 104 TSIGLGVLTGVSYAVTPNVDLDAGYRY 130 (155)
T ss_dssp CEEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred cceeeEEEEEEEEEecCCEEEEEEEEE
Confidence 45678899999985 588889998876
No 2
>d2fnaa1 a.4.5.11 (A:284-356) Hypothetical protein SSO1545, C-terminal domain {Sulfolobus solfataricus [TaxId: 2287]}
Probab=22.85 E-value=41 Score=23.32 Aligned_cols=36 Identities=8% Similarity=-0.092 Sum_probs=30.3
Q ss_pred HHHHHHHhhhhhcCccHHHHHHHHHHHHHHhhhCCCcce
Q 009626 92 DCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDS 130 (530)
Q Consensus 92 ~~vI~r~l~~~~G~~~~~~~l~~~~~~~~rL~~lg~F~~ 130 (530)
=+-|++++..++|.+.+...+... .++|..+|+.+.
T Consensus 21 Ws~IK~yle~~~G~~I~d~~ls~l---L~nL~k~~~iek 56 (73)
T d2fnaa1 21 WSDVKRALELEEGIEISDSEIYNY---LTQLTKHSWIIK 56 (73)
T ss_dssp HHHHHHHHHHHHCSCCCHHHHHHH---HHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcCCCCChHHHHHH---HHHHHHcCceee
Confidence 567999999999987777777775 999999999764
No 3
>d1g3pa2 b.37.1.1 (A:91-217) N-terminal domains of the minor coat protein g3p {Bacteriophage M13 [TaxId: 10870]}
Probab=18.30 E-value=12 Score=27.03 Aligned_cols=13 Identities=54% Similarity=0.991 Sum_probs=7.3
Q ss_pred CCCCCCCCCCCCC
Q 009626 8 PGPEQKPEALNPN 20 (530)
Q Consensus 8 ~~~~~~~~~~~~~ 20 (530)
||.||.|.+|||.
T Consensus 22 pgteqnpanpnps 34 (127)
T d1g3pa2 22 PGTEQNPANPNPS 34 (127)
T ss_dssp BSSSSBCSCSSCE
T ss_pred CCcccCCCCCCCc
Confidence 4555555555554
No 4
>d1qjpa_ f.4.1.1 (A:) Outer membrane protein A (OMPA) transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=17.32 E-value=2.1e+02 Score=21.84 Aligned_cols=26 Identities=8% Similarity=0.202 Sum_probs=20.7
Q ss_pred cCceeeeeEEEEEee-CceEEEEEEEE
Q 009626 483 QSTRSSVGAGIVFPT-NLFRLEVNYCR 508 (530)
Q Consensus 483 ~~~~~s~G~Glr~~t-p~g~l~ldya~ 508 (530)
..+...+|+|+.|.. |...+++.|-+
T Consensus 117 ~~~~~~~G~G~~y~i~~~~~l~~ey~~ 143 (171)
T d1qjpa_ 117 TGVSPVFAGGVEYAITPEIATRLEYQW 143 (171)
T ss_dssp EEEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred CccceEEEeEEEEEeCCCEEEEEEEEE
Confidence 456778999999865 78888888876
No 5
>d1x2ga1 d.224.1.3 (A:247-337) Two-domain LplA, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=8.64 E-value=2.4e+02 Score=19.69 Aligned_cols=37 Identities=11% Similarity=0.138 Sum_probs=29.5
Q ss_pred EEEEEEEECCcccCHHHHHHHhhhhhcCccHHHHHHHH
Q 009626 78 RVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAA 115 (530)
Q Consensus 78 ~i~~V~i~G~~~tk~~vI~r~l~~~~G~~~~~~~l~~~ 115 (530)
+|.+|+|.|..- .+..|...-....|.+|+.+.|.+.
T Consensus 28 ~I~~~~i~gDfl-~~~~i~~le~~L~G~~y~~~~i~~~ 64 (91)
T d1x2ga1 28 HITRAQVFTDSL-NPAPLEALAGRLQGCLYRADMLQQE 64 (91)
T ss_dssp EEEEEEEEECCS-CCHHHHHHHHHHTTCBSSHHHHHHH
T ss_pred EEEEEEEEcCCC-CcHHHHHHHHHHcCCCcCHHHHHHH
Confidence 588999998864 4566777767778999999999874
No 6
>d1qj8a_ f.4.1.1 (A:) Outer membrane protein X (OMPX) {Escherichia coli [TaxId: 562]}
Probab=7.58 E-value=3.5e+02 Score=20.11 Aligned_cols=26 Identities=27% Similarity=0.384 Sum_probs=20.9
Q ss_pred cCceeeeeEEEEEe-eCceEEEEEEEE
Q 009626 483 QSTRSSVGAGIVFP-TNLFRLEVNYCR 508 (530)
Q Consensus 483 ~~~~~s~G~Glr~~-tp~g~l~ldya~ 508 (530)
..+-..+|+|+.|. ++...+++.|-+
T Consensus 103 ~~~g~~~G~Gvey~l~~n~~~~~eY~~ 129 (148)
T d1qj8a_ 103 SDYGFSYGAGLQFNPMENVALDFSYEQ 129 (148)
T ss_dssp EEEEEEEEEEEEECSSTTEEEEEEEEE
T ss_pred cccceeEeeeEEEEecCCEEEEEEEEE
Confidence 45667899999996 578889999875
No 7
>d1vqza1 d.224.1.3 (A:242-329) LplA-like protein SP1160, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}
Probab=7.52 E-value=97 Score=21.89 Aligned_cols=49 Identities=16% Similarity=0.140 Sum_probs=35.7
Q ss_pred EEEEEEEECCcccCHHHHHHHhhhhhcCccHHHHHHHHHHHHHHhhhCCCcce
Q 009626 78 RVHDVIVKGNTKTKDCLIEAELDAIRNATTMQEIIQAANIINYKLRELECFDS 130 (530)
Q Consensus 78 ~i~~V~i~G~~~tk~~vI~r~l~~~~G~~~~~~~l~~~~~~~~rL~~lg~F~~ 130 (530)
+|.+|+|.|.-- .+.-|...-....|.+|+.+.|.+. ...+.-..+|..
T Consensus 28 ~I~~iki~GDff-~~~~i~~le~~L~G~~y~~~~i~~~---L~~~~~~~Yf~~ 76 (88)
T d1vqza1 28 KIQDIKIYGDFF-GIEDVAAVEDVLRGVKYEREDVLKA---LKTIDITRYFAG 76 (88)
T ss_dssp EEEEEEEEESCC-CSSCTHHHHHHHTTCBSSHHHHHHH---HTTSCGGGTSTT
T ss_pred EEEEEEEEecCC-CchhHHHHHHHHcCCCCCHHHHHHH---HHhCCHHHHhCC
Confidence 588999999864 5556777667788999999999874 555544455544
No 8
>d1j2oa1 g.39.1.3 (A:1-30) Rhombotin-2 (Lmo2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.49 E-value=66 Score=18.11 Aligned_cols=11 Identities=27% Similarity=0.748 Sum_probs=8.6
Q ss_pred CCCCCcccccC
Q 009626 369 STSLPERFFLG 379 (530)
Q Consensus 369 ~~p~~drF~lG 379 (530)
.-|+.|||+|=
T Consensus 10 ~~~I~DRflL~ 20 (30)
T d1j2oa1 10 QQNIGDRYFLK 20 (30)
T ss_dssp CSCBCSSEEEE
T ss_pred CCcchHHHHHH
Confidence 35889999983
No 9
>d2gcxa1 b.34.1.2 (A:1-75) Ferrous iron transport protein A, FeoA {Klebsiella pneumoniae [TaxId: 573]}
Probab=6.38 E-value=3.4e+02 Score=18.09 Aligned_cols=33 Identities=18% Similarity=0.107 Sum_probs=0.0
Q ss_pred HHHHHhhhCCCcceeEEEEcCCCCCCCCceEEEEEE
Q 009626 117 IINYKLRELECFDSVEITLDSGPPELPGTSNVIIQV 152 (530)
Q Consensus 117 ~~~~rL~~lg~F~~V~i~~~~~~~~~~~~v~l~v~V 152 (530)
..++||.++|+.....|++.. ..|-.=++.|.|
T Consensus 21 ~~~~RL~~mGl~pG~~V~v~~---~ap~g~P~~i~v 53 (75)
T d2gcxa1 21 AYRQKLLSLGMLPGSSFHVVR---VAPLGDPVHIET 53 (75)
T ss_dssp HHHHHHTTTTCCSSEEEEECC---CCSSCCEEEEEE
T ss_pred HHHHHHHHcCCCCCCEEEEEE---ECCCCCCEEEEE
No 10
>d1qkla_ a.143.1.2 (A:) RPB6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.78 E-value=1.3e+02 Score=22.92 Aligned_cols=32 Identities=22% Similarity=0.418 Sum_probs=0.0
Q ss_pred ccccccccccccccccCCCccccccccCccCC
Q 009626 24 IEEEEEEDDDVVEEEDDDDLEEDDDAAQPQRK 55 (530)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (530)
|++++-+.++.++++++++.+..++.+.....
T Consensus 3 D~e~~~d~~~~~~~~~~e~~~~~~~~~~~~~~ 34 (127)
T d1qkla_ 3 DNEDNFDGDDFDDVEEDEGLDDLENAEEEGQE 34 (127)
T ss_dssp CCCCCSCCCSSSSSCCCCTTTTCCCSCCCCSC
T ss_pred cccccccccccccccccccccccccchhhccc
Done!