Query 009628
Match_columns 530
No_of_seqs 397 out of 1993
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 15:25:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009628.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009628hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1122 tRNA and rRNA cytosine 100.0 9.8E-73 2.1E-77 583.8 13.9 402 3-526 7-416 (460)
2 COG0144 Sun tRNA and rRNA cyto 100.0 5.5E-52 1.2E-56 434.5 30.3 262 13-511 52-317 (355)
3 PRK11933 yebU rRNA (cytosine-C 100.0 1.4E-49 3E-54 428.6 27.3 176 239-509 89-270 (470)
4 PF01189 Nol1_Nop2_Fmu: NOL1/N 100.0 5.6E-48 1.2E-52 393.0 16.8 186 238-517 62-254 (283)
5 PRK14903 16S rRNA methyltransf 100.0 4.9E-44 1.1E-48 383.4 31.5 258 14-509 133-393 (431)
6 PRK14901 16S rRNA methyltransf 100.0 1.3E-43 2.8E-48 380.5 30.1 260 14-508 148-410 (434)
7 TIGR00446 nop2p NOL1/NOP2/sun 100.0 8.3E-42 1.8E-46 344.3 24.2 174 239-508 49-225 (264)
8 TIGR00563 rsmB ribosomal RNA s 100.0 3.5E-41 7.5E-46 360.9 29.0 175 238-508 215-394 (426)
9 PRK10901 16S rRNA methyltransf 100.0 2.5E-38 5.4E-43 339.0 31.7 175 239-509 222-399 (427)
10 PRK14904 16S rRNA methyltransf 100.0 4E-38 8.7E-43 339.1 28.7 173 239-508 228-403 (445)
11 PRK14902 16S rRNA methyltransf 100.0 1.4E-37 3E-42 334.8 29.1 177 239-510 228-407 (444)
12 KOG2198 tRNA cytosine-5-methyl 100.0 1.3E-36 2.8E-41 312.7 14.7 199 239-523 133-342 (375)
13 KOG2360 Proliferation-associat 99.9 8.1E-27 1.8E-31 240.5 11.0 188 238-519 190-387 (413)
14 PRK15128 23S rRNA m(5)C1962 me 99.6 3.5E-15 7.7E-20 159.1 17.5 181 220-507 182-367 (396)
15 COG1092 Predicted SAM-dependen 99.6 1.9E-14 4.1E-19 152.5 18.4 183 218-507 177-364 (393)
16 PF10672 Methyltrans_SAM: S-ad 99.5 2.4E-14 5.2E-19 146.3 10.7 180 218-508 83-266 (286)
17 COG2242 CobL Precorrin-6B meth 99.5 2.5E-13 5.4E-18 129.9 15.4 136 250-508 23-158 (187)
18 PRK11783 rlmL 23S rRNA m(2)G24 99.5 4.6E-13 1E-17 152.4 16.7 162 221-490 501-664 (702)
19 PRK00377 cbiT cobalt-precorrin 99.4 4E-12 8.7E-17 122.9 17.5 73 251-323 30-103 (198)
20 COG2226 UbiE Methylase involve 99.4 6E-13 1.3E-17 132.7 11.3 77 246-323 36-112 (238)
21 TIGR00537 hemK_rel_arch HemK-r 99.4 7.8E-12 1.7E-16 118.7 15.3 151 248-502 6-157 (179)
22 TIGR01177 conserved hypothetic 99.4 3.7E-12 8.1E-17 132.6 13.6 123 254-485 175-297 (329)
23 PF13659 Methyltransf_26: Meth 99.4 1.8E-12 4E-17 113.4 9.4 116 262-484 1-117 (117)
24 PTZ00146 fibrillarin; Provisio 99.4 1.2E-11 2.6E-16 126.5 16.4 64 257-322 128-191 (293)
25 PF01209 Ubie_methyltran: ubiE 99.4 7.8E-13 1.7E-17 131.7 7.5 73 251-323 37-109 (233)
26 PF12847 Methyltransf_18: Meth 99.4 2.5E-12 5.5E-17 111.4 9.3 60 261-321 1-61 (112)
27 PRK14967 putative methyltransf 99.3 4.6E-11 1E-15 117.6 16.6 78 241-322 14-94 (223)
28 PRK04266 fibrillarin; Provisio 99.3 3.9E-11 8.6E-16 119.1 16.1 72 247-321 56-129 (226)
29 TIGR03533 L3_gln_methyl protei 99.3 1.2E-10 2.5E-15 119.3 19.1 144 258-503 118-267 (284)
30 PRK07402 precorrin-6B methylas 99.3 5.7E-11 1.2E-15 114.4 15.7 82 241-323 20-101 (196)
31 TIGR00080 pimt protein-L-isoas 99.3 2.8E-11 6E-16 118.5 13.7 71 252-322 68-138 (215)
32 PF05175 MTS: Methyltransferas 99.3 1.4E-11 3.1E-16 116.4 10.7 75 247-322 17-91 (170)
33 TIGR03704 PrmC_rel_meth putati 99.3 5.1E-11 1.1E-15 119.9 15.2 141 261-503 86-233 (251)
34 COG2519 GCD14 tRNA(1-methylade 99.3 2E-10 4.3E-15 114.6 17.2 83 239-321 72-155 (256)
35 PRK14968 putative methyltransf 99.2 2.6E-10 5.7E-15 107.5 16.2 151 250-502 12-165 (188)
36 TIGR03534 RF_mod_PrmC protein- 99.2 2.7E-10 5.9E-15 112.6 16.8 61 261-322 87-147 (251)
37 TIGR02752 MenG_heptapren 2-hep 99.2 1.1E-10 2.3E-15 114.7 13.2 71 252-322 36-106 (231)
38 COG4123 Predicted O-methyltran 99.2 2.1E-10 4.5E-15 114.9 15.3 165 247-516 30-202 (248)
39 TIGR00438 rrmJ cell division p 99.2 2E-10 4.4E-15 109.9 14.7 56 256-322 27-82 (188)
40 TIGR02469 CbiT precorrin-6Y C5 99.2 2.6E-10 5.6E-15 99.9 14.1 67 254-321 12-78 (124)
41 PRK03522 rumB 23S rRNA methylu 99.2 1.6E-10 3.4E-15 119.9 14.4 65 256-323 168-232 (315)
42 PRK08287 cobalt-precorrin-6Y C 99.2 3.7E-10 8E-15 107.9 15.7 71 250-321 20-90 (187)
43 PRK00121 trmB tRNA (guanine-N( 99.2 1.4E-10 3E-15 112.8 12.6 61 261-322 40-100 (202)
44 PRK13944 protein-L-isoaspartat 99.2 2.4E-10 5.3E-15 111.3 14.2 70 253-322 64-134 (205)
45 PRK13942 protein-L-isoaspartat 99.2 1.8E-10 3.9E-15 112.9 13.3 71 252-322 67-137 (212)
46 PRK09328 N5-glutamine S-adenos 99.2 6.2E-10 1.4E-14 111.9 17.2 144 257-502 104-254 (275)
47 PLN02233 ubiquinone biosynthes 99.2 1.9E-10 4E-15 116.3 12.6 71 252-322 64-137 (261)
48 PF13847 Methyltransf_31: Meth 99.2 1.8E-10 4E-15 106.2 10.9 64 260-323 2-65 (152)
49 PRK13168 rumA 23S rRNA m(5)U19 99.2 2.8E-10 6E-15 123.3 14.0 66 255-323 291-356 (443)
50 PF08704 GCD14: tRNA methyltra 99.2 2.1E-10 4.5E-15 115.3 12.1 78 243-322 24-102 (247)
51 PRK11805 N5-glutamine S-adenos 99.2 3.5E-10 7.6E-15 117.1 13.9 61 262-323 134-195 (307)
52 PRK11873 arsM arsenite S-adeno 99.2 3.9E-10 8.4E-15 113.9 13.5 66 257-322 73-138 (272)
53 TIGR00536 hemK_fam HemK family 99.1 5.1E-10 1.1E-14 114.3 14.2 61 261-322 114-175 (284)
54 KOG1540 Ubiquinone biosynthesi 99.1 2.6E-10 5.6E-15 113.6 11.4 134 251-502 90-231 (296)
55 PRK00107 gidB 16S rRNA methylt 99.1 8E-10 1.7E-14 106.7 12.8 63 260-323 44-106 (187)
56 PRK00312 pcm protein-L-isoaspa 99.1 1.2E-09 2.5E-14 106.5 14.0 67 252-321 69-135 (212)
57 TIGR00479 rumA 23S rRNA (uraci 99.1 1.1E-09 2.4E-14 118.0 14.6 68 254-324 285-352 (431)
58 TIGR00138 gidB 16S rRNA methyl 99.1 3E-09 6.5E-14 102.1 15.3 62 261-323 42-103 (181)
59 PLN02244 tocopherol O-methyltr 99.1 1.2E-09 2.5E-14 114.6 13.1 61 260-322 117-178 (340)
60 PRK11188 rrmJ 23S rRNA methylt 99.1 2E-09 4.2E-14 105.6 13.8 54 259-323 49-102 (209)
61 TIGR00091 tRNA (guanine-N(7)-) 99.1 1.5E-09 3.3E-14 104.7 12.5 63 261-324 16-78 (194)
62 PRK15001 SAM-dependent 23S rib 99.0 2.8E-09 6E-14 113.3 14.4 74 247-321 214-290 (378)
63 PF01135 PCMT: Protein-L-isoas 99.0 1.3E-09 2.8E-14 107.1 10.6 77 247-323 56-134 (209)
64 PRK08317 hypothetical protein; 99.0 4.9E-09 1.1E-13 101.7 14.4 68 253-321 11-78 (241)
65 COG2265 TrmA SAM-dependent met 99.0 3.4E-09 7.3E-14 114.4 14.0 78 244-324 270-353 (432)
66 PLN02781 Probable caffeoyl-CoA 99.0 6.1E-09 1.3E-13 103.9 14.6 74 252-325 59-133 (234)
67 PF01472 PUA: PUA domain; Int 99.0 3.4E-10 7.4E-15 93.3 4.7 70 124-225 1-70 (74)
68 PRK14121 tRNA (guanine-N(7)-)- 99.0 4.7E-09 1E-13 111.6 14.0 68 255-323 116-183 (390)
69 PRK09489 rsmC 16S ribosomal RN 99.0 5.5E-09 1.2E-13 109.8 14.4 72 247-320 182-253 (342)
70 COG2518 Pcm Protein-L-isoaspar 99.0 6.3E-09 1.4E-13 101.7 13.3 80 240-322 51-130 (209)
71 PF02475 Met_10: Met-10+ like- 99.0 1.4E-09 3.1E-14 106.1 8.5 64 259-323 99-163 (200)
72 PRK13943 protein-L-isoaspartat 99.0 7.7E-09 1.7E-13 107.8 14.5 69 255-323 74-142 (322)
73 PRK14966 unknown domain/N5-glu 99.0 1.5E-08 3.3E-13 108.5 16.6 71 250-322 239-310 (423)
74 PRK11207 tellurite resistance 99.0 1.1E-08 2.3E-13 99.2 13.9 71 248-321 17-87 (197)
75 TIGR00451 unchar_dom_2 unchara 99.0 6.3E-10 1.4E-14 98.0 4.7 88 102-226 15-102 (107)
76 PRK15451 tRNA cmo(5)U34 methyl 98.9 1.5E-08 3.2E-13 101.4 14.9 64 259-322 54-119 (247)
77 PLN02476 O-methyltransferase 98.9 1.9E-08 4.1E-13 102.8 15.3 76 250-325 107-183 (278)
78 PRK14560 putative RNA-binding 98.9 1.2E-09 2.6E-14 103.0 5.8 74 122-226 75-148 (160)
79 PRK04338 N(2),N(2)-dimethylgua 98.9 7.8E-09 1.7E-13 110.2 12.6 71 252-323 47-118 (382)
80 TIGR02085 meth_trns_rumB 23S r 98.9 1.3E-08 2.8E-13 108.2 14.2 65 257-324 229-293 (374)
81 PF03602 Cons_hypoth95: Conser 98.9 5.6E-09 1.2E-13 100.6 10.4 63 261-325 42-105 (183)
82 COG0293 FtsJ 23S rRNA methylas 98.9 9.8E-09 2.1E-13 100.2 12.0 137 260-506 44-181 (205)
83 PTZ00098 phosphoethanolamine N 98.9 1E-08 2.2E-13 103.8 12.4 67 251-321 42-108 (263)
84 KOG2915 tRNA(1-methyladenosine 98.9 4.8E-08 1E-12 98.3 16.8 77 244-320 88-165 (314)
85 COG2016 Predicted RNA-binding 98.9 1.7E-09 3.7E-14 101.1 5.9 73 123-226 76-148 (161)
86 PRK01544 bifunctional N5-gluta 98.9 2.2E-08 4.8E-13 110.4 15.7 61 261-322 138-199 (506)
87 COG1041 Predicted DNA modifica 98.9 6.2E-09 1.3E-13 108.4 10.6 125 250-483 186-311 (347)
88 COG2890 HemK Methylase of poly 98.9 2.4E-08 5.1E-13 102.3 14.6 58 264-322 113-170 (280)
89 PF08241 Methyltransf_11: Meth 98.9 1.4E-09 3E-14 90.3 4.4 50 266-320 1-50 (95)
90 PF02353 CMAS: Mycolic acid cy 98.9 6.6E-09 1.4E-13 106.0 10.3 68 252-321 53-121 (273)
91 PRK01683 trans-aconitate 2-met 98.9 2.9E-08 6.3E-13 99.3 14.5 71 245-321 15-85 (258)
92 PF01170 UPF0020: Putative RNA 98.9 4.1E-08 8.9E-13 94.1 14.4 72 252-323 19-99 (179)
93 PLN02396 hexaprenyldihydroxybe 98.9 2E-08 4.3E-13 104.8 13.1 62 258-322 128-190 (322)
94 PRK11036 putative S-adenosyl-L 98.9 2.6E-08 5.7E-13 99.9 13.5 61 260-323 43-104 (255)
95 PRK14103 trans-aconitate 2-met 98.8 2.7E-08 5.9E-13 99.7 12.7 63 251-321 19-81 (255)
96 PF05958 tRNA_U5-meth_tr: tRNA 98.8 1.8E-08 3.8E-13 106.4 11.8 67 253-323 189-255 (352)
97 PRK10909 rsmD 16S rRNA m(2)G96 98.8 5.6E-08 1.2E-12 94.9 14.1 63 260-324 52-114 (199)
98 PRK10258 biotin biosynthesis p 98.8 1.7E-08 3.6E-13 100.7 10.3 58 245-305 26-83 (251)
99 TIGR00406 prmA ribosomal prote 98.8 6.9E-08 1.5E-12 99.0 15.0 53 259-313 157-209 (288)
100 TIGR03684 arCOG00985 arCOG0415 98.8 3.5E-09 7.6E-14 98.8 4.6 74 122-226 68-141 (150)
101 PLN02336 phosphoethanolamine N 98.8 5.3E-08 1.2E-12 106.0 14.0 66 253-321 258-323 (475)
102 PRK05031 tRNA (uracil-5-)-meth 98.8 4.6E-08 1E-12 103.5 13.2 61 262-325 207-267 (362)
103 cd02440 AdoMet_MTases S-adenos 98.8 7.5E-08 1.6E-12 79.0 11.6 58 264-323 1-58 (107)
104 PRK00216 ubiE ubiquinone/menaq 98.8 5.4E-08 1.2E-12 95.0 12.5 71 251-321 41-112 (239)
105 COG0742 N6-adenine-specific me 98.8 9.2E-08 2E-12 92.2 13.5 63 261-325 43-106 (187)
106 TIGR00308 TRM1 tRNA(guanine-26 98.8 6.7E-08 1.4E-12 102.8 13.5 62 263-324 46-107 (374)
107 COG2227 UbiG 2-polyprenyl-3-me 98.8 2.7E-08 5.7E-13 98.9 9.6 50 260-312 58-107 (243)
108 TIGR00477 tehB tellurite resis 98.8 1.4E-07 3.1E-12 91.2 14.5 67 250-320 19-85 (195)
109 PF13649 Methyltransf_25: Meth 98.7 1.5E-08 3.2E-13 87.1 6.1 58 265-323 1-60 (101)
110 COG4122 Predicted O-methyltran 98.7 1.4E-07 3E-12 93.3 13.6 74 252-325 50-125 (219)
111 COG2813 RsmC 16S RNA G1207 met 98.7 1.2E-07 2.6E-12 97.2 13.5 73 246-319 143-215 (300)
112 TIGR02143 trmA_only tRNA (urac 98.7 1.4E-07 3.1E-12 99.5 14.5 60 263-325 199-258 (353)
113 COG2230 Cfa Cyclopropane fatty 98.7 2E-07 4.3E-12 95.3 14.1 68 251-320 62-130 (283)
114 TIGR00095 RNA methyltransferas 98.7 2E-07 4.3E-12 90.2 13.4 62 261-324 49-111 (189)
115 COG2520 Predicted methyltransf 98.7 1.5E-07 3.2E-12 98.6 13.2 63 260-324 187-250 (341)
116 PRK00517 prmA ribosomal protei 98.7 3E-07 6.5E-12 92.3 14.8 51 259-311 117-167 (250)
117 TIGR00740 methyltransferase, p 98.7 2.8E-07 6E-12 91.5 14.4 63 260-322 52-116 (239)
118 PRK11705 cyclopropane fatty ac 98.7 1.9E-07 4.1E-12 99.7 13.3 64 252-320 158-221 (383)
119 PF01596 Methyltransf_3: O-met 98.7 7.4E-08 1.6E-12 94.5 9.0 64 262-325 46-110 (205)
120 PF01728 FtsJ: FtsJ-like methy 98.7 4E-08 8.6E-13 93.4 6.5 40 258-297 20-59 (181)
121 PRK12335 tellurite resistance 98.6 3.4E-07 7.4E-12 93.7 13.7 62 256-321 115-176 (287)
122 PHA03411 putative methyltransf 98.6 7.1E-07 1.5E-11 91.0 15.7 61 257-323 60-120 (279)
123 PHA03412 putative methyltransf 98.6 1.8E-07 3.8E-12 93.5 11.1 57 260-321 48-106 (241)
124 TIGR01934 MenG_MenH_UbiE ubiqu 98.6 3.2E-07 6.9E-12 88.6 12.7 68 252-321 30-97 (223)
125 PRK06922 hypothetical protein; 98.6 5.2E-07 1.1E-11 101.1 15.5 67 254-322 411-477 (677)
126 smart00828 PKS_MT Methyltransf 98.6 3.5E-07 7.6E-12 89.4 12.5 58 263-321 1-59 (224)
127 smart00650 rADc Ribosomal RNA 98.6 3E-07 6.4E-12 86.7 11.0 65 254-323 6-70 (169)
128 PRK15068 tRNA mo(5)U34 methylt 98.6 5E-07 1.1E-11 94.3 13.7 66 254-321 115-181 (322)
129 PLN03075 nicotianamine synthas 98.6 7E-07 1.5E-11 92.0 13.7 63 261-323 123-188 (296)
130 PRK04457 spermidine synthase; 98.6 2.2E-06 4.9E-11 86.9 16.8 64 260-324 65-129 (262)
131 COG2263 Predicted RNA methylas 98.6 2.4E-06 5.2E-11 82.4 15.8 65 255-322 39-103 (198)
132 PLN02490 MPBQ/MSBQ methyltrans 98.6 4.1E-07 8.9E-12 95.6 11.5 58 260-321 112-169 (340)
133 PRK13795 hypothetical protein; 98.5 2.6E-07 5.6E-12 104.6 10.3 159 122-315 125-301 (636)
134 TIGR02072 BioC biotin biosynth 98.5 5.8E-07 1.3E-11 87.4 11.3 57 260-321 33-89 (240)
135 KOG2904 Predicted methyltransf 98.5 1.1E-06 2.4E-11 88.8 13.1 60 261-321 148-208 (328)
136 TIGR00452 methyltransferase, p 98.5 1.3E-06 2.8E-11 91.0 14.1 46 256-303 116-161 (314)
137 TIGR02716 C20_methyl_CrtF C-20 98.5 1.9E-06 4.1E-11 88.8 15.0 70 251-322 139-209 (306)
138 KOG1663 O-methyltransferase [S 98.5 1.1E-06 2.5E-11 86.8 12.4 74 252-325 64-138 (237)
139 PRK05134 bifunctional 3-demeth 98.5 1.6E-06 3.5E-11 85.3 13.5 66 252-321 39-104 (233)
140 PF09445 Methyltransf_15: RNA 98.5 4.4E-07 9.6E-12 86.0 9.1 59 263-324 1-60 (163)
141 TIGR01983 UbiG ubiquinone bios 98.5 1.6E-06 3.4E-11 84.5 13.2 62 259-323 43-104 (224)
142 PF02390 Methyltransf_4: Putat 98.5 6.9E-07 1.5E-11 86.9 10.3 133 264-507 20-156 (195)
143 PLN02672 methionine S-methyltr 98.5 9.1E-07 2E-11 104.4 12.8 49 262-311 119-167 (1082)
144 TIGR03438 probable methyltrans 98.5 1.4E-06 3E-11 90.0 12.0 93 228-323 33-126 (301)
145 COG2264 PrmA Ribosomal protein 98.4 3E-06 6.6E-11 87.3 13.8 63 249-313 148-212 (300)
146 PRK13534 7-cyano-7-deazaguanin 98.4 2.1E-07 4.6E-12 104.9 5.8 72 123-226 563-634 (639)
147 PLN02589 caffeoyl-CoA O-methyl 98.4 3.6E-06 7.8E-11 84.9 13.8 66 260-325 78-144 (247)
148 PLN02336 phosphoethanolamine N 98.4 2.7E-06 5.9E-11 92.7 13.9 67 250-321 26-92 (475)
149 PF06325 PrmA: Ribosomal prote 98.4 1.4E-06 3E-11 90.0 10.2 64 248-313 146-211 (295)
150 KOG1271 Methyltransferases [Ge 98.4 9.1E-07 2E-11 84.7 8.1 60 263-323 69-129 (227)
151 TIGR00417 speE spermidine synt 98.4 7.4E-06 1.6E-10 83.3 15.1 62 262-324 73-138 (270)
152 PRK00050 16S rRNA m(4)C1402 me 98.4 1.1E-06 2.5E-11 90.6 9.2 70 253-324 11-80 (296)
153 PRK13794 hypothetical protein; 98.4 1.1E-06 2.5E-11 96.3 9.3 163 122-320 123-310 (479)
154 PF03848 TehB: Tellurite resis 98.4 3.3E-06 7.3E-11 82.1 11.3 70 247-321 17-86 (192)
155 TIGR03587 Pse_Me-ase pseudamin 98.4 6.2E-06 1.3E-10 80.7 13.2 47 258-305 40-86 (204)
156 TIGR02021 BchM-ChlM magnesium 98.3 6.2E-06 1.3E-10 80.7 13.1 60 259-321 53-113 (219)
157 KOG1270 Methyltransferases [Co 98.3 1.8E-06 3.8E-11 86.9 9.1 43 260-305 88-130 (282)
158 COG0220 Predicted S-adenosylme 98.3 5.5E-06 1.2E-10 82.6 12.4 122 263-496 50-172 (227)
159 smart00138 MeTrc Methyltransfe 98.3 2.8E-06 6.1E-11 86.3 10.4 46 260-305 98-151 (264)
160 PRK11088 rrmA 23S rRNA methylt 98.3 2.2E-06 4.9E-11 86.9 9.6 57 260-321 84-142 (272)
161 PRK00811 spermidine synthase; 98.3 2E-05 4.4E-10 80.8 16.4 63 261-324 76-143 (283)
162 PF08242 Methyltransf_12: Meth 98.3 1.7E-07 3.7E-12 79.9 0.7 51 266-317 1-51 (99)
163 PF05401 NodS: Nodulation prot 98.3 1.4E-06 3.1E-11 84.6 6.6 66 251-321 33-98 (201)
164 PF13489 Methyltransf_23: Meth 98.2 2.1E-06 4.5E-11 78.4 6.8 49 250-301 10-59 (161)
165 PRK10742 putative methyltransf 98.2 1.9E-05 4E-10 79.6 14.0 71 251-324 76-157 (250)
166 PF02384 N6_Mtase: N-6 DNA Met 98.2 1.1E-06 2.3E-11 90.6 5.0 71 240-310 25-101 (311)
167 TIGR03840 TMPT_Se_Te thiopurin 98.2 1.1E-05 2.3E-10 79.7 11.8 53 247-302 17-72 (213)
168 COG2521 Predicted archaeal met 98.2 2.2E-06 4.8E-11 84.9 6.8 45 254-300 127-171 (287)
169 KOG4589 Cell division protein 98.2 1.4E-05 3E-10 77.0 11.6 74 424-509 135-209 (232)
170 PRK05785 hypothetical protein; 98.2 6.1E-06 1.3E-10 81.9 9.2 42 261-304 51-92 (226)
171 PRK14896 ksgA 16S ribosomal RN 98.1 8.2E-06 1.8E-10 82.4 9.3 66 253-323 21-86 (258)
172 PRK03612 spermidine synthase; 98.1 4.9E-05 1.1E-09 84.4 16.2 64 260-324 296-366 (521)
173 COG4106 Tam Trans-aconitate me 98.1 1.3E-05 2.9E-10 78.7 9.9 58 258-321 27-84 (257)
174 PF01269 Fibrillarin: Fibrilla 98.1 2.4E-05 5.2E-10 77.4 11.4 65 257-323 69-133 (229)
175 PRK06202 hypothetical protein; 98.1 1.2E-05 2.7E-10 79.3 9.4 54 254-307 53-109 (232)
176 PRK01581 speE spermidine synth 98.1 5.6E-05 1.2E-09 80.1 13.9 66 257-324 147-219 (374)
177 PF07021 MetW: Methionine bios 98.1 3.8E-05 8.2E-10 74.5 11.4 56 259-323 11-66 (193)
178 PTZ00338 dimethyladenosine tra 98.0 3E-05 6.5E-10 80.1 10.2 69 252-323 27-96 (294)
179 PRK13255 thiopurine S-methyltr 98.0 0.00016 3.4E-09 71.6 14.6 49 258-312 34-82 (218)
180 PLN02366 spermidine synthase 98.0 0.00027 5.9E-09 73.6 16.7 64 261-325 91-158 (308)
181 PRK07580 Mg-protoporphyrin IX 98.0 9.5E-05 2.1E-09 72.2 12.4 59 259-320 61-120 (230)
182 PRK01544 bifunctional N5-gluta 98.0 6.7E-05 1.5E-09 83.0 12.5 136 260-507 346-484 (506)
183 KOG2187 tRNA uracil-5-methyltr 97.9 2.9E-05 6.2E-10 84.5 9.1 78 243-323 359-442 (534)
184 KOG1099 SAM-dependent methyltr 97.9 8.6E-05 1.9E-09 73.6 10.8 125 263-501 43-179 (294)
185 smart00359 PUA Putative RNA-bi 97.9 1.7E-05 3.6E-10 64.8 5.0 71 125-227 2-74 (77)
186 KOG0024 Sorbitol dehydrogenase 97.9 0.00048 1E-08 71.5 16.0 85 225-315 133-219 (354)
187 COG5270 PUA domain (predicted 97.8 1.8E-05 3.9E-10 75.5 4.9 72 123-226 128-199 (202)
188 PLN02585 magnesium protoporphy 97.8 6.4E-05 1.4E-09 78.5 9.5 47 261-310 144-190 (315)
189 PRK00274 ksgA 16S ribosomal RN 97.8 6.7E-05 1.5E-09 76.4 8.5 65 253-323 34-98 (272)
190 COG0116 Predicted N6-adenine-s 97.8 0.00035 7.6E-09 74.3 14.0 68 256-323 186-292 (381)
191 PF03291 Pox_MCEL: mRNA cappin 97.8 6.7E-05 1.5E-09 78.8 8.3 47 261-309 62-108 (331)
192 PRK11727 23S rRNA mA1618 methy 97.7 0.00042 9.1E-09 72.6 13.5 56 261-317 114-171 (321)
193 PF02527 GidB: rRNA small subu 97.7 0.00026 5.5E-09 68.5 10.8 59 264-323 51-109 (184)
194 KOG1596 Fibrillarin and relate 97.7 0.00014 3E-09 72.7 8.2 72 250-323 139-216 (317)
195 TIGR02987 met_A_Alw26 type II 97.7 0.00039 8.4E-09 77.2 12.4 50 261-310 31-87 (524)
196 KOG1098 Putative SAM-dependent 97.6 0.00012 2.5E-09 81.0 7.9 40 259-298 42-81 (780)
197 PF01861 DUF43: Protein of unk 97.6 0.0006 1.3E-08 68.4 12.0 60 261-323 44-103 (243)
198 KOG1541 Predicted protein carb 97.6 0.0006 1.3E-08 67.5 11.4 59 242-304 29-90 (270)
199 TIGR00006 S-adenosyl-methyltra 97.6 0.00041 8.9E-09 72.1 10.9 70 253-324 12-81 (305)
200 TIGR00755 ksgA dimethyladenosi 97.6 0.00057 1.2E-08 68.8 11.6 66 253-323 21-86 (253)
201 COG0357 GidB Predicted S-adeno 97.6 0.00045 9.7E-09 68.4 10.3 61 262-323 68-128 (215)
202 PLN02823 spermine synthase 97.6 0.0022 4.8E-08 67.7 15.7 63 262-325 104-170 (336)
203 PF12147 Methyltransf_20: Puta 97.5 0.0017 3.7E-08 66.8 14.2 63 261-323 135-199 (311)
204 KOG2671 Putative RNA methylase 97.5 0.0001 2.2E-09 76.8 4.8 60 250-312 197-263 (421)
205 PRK11783 rlmL 23S rRNA m(2)G24 97.5 0.0016 3.5E-08 74.9 15.1 64 260-323 189-294 (702)
206 KOG3191 Predicted N6-DNA-methy 97.5 0.0039 8.5E-08 60.2 15.0 61 262-323 44-104 (209)
207 KOG2523 Predicted RNA-binding 97.5 0.00014 3.1E-09 68.1 5.0 95 100-225 66-167 (181)
208 KOG2899 Predicted methyltransf 97.5 0.00058 1.3E-08 68.4 9.5 46 261-307 58-103 (288)
209 TIGR02081 metW methionine bios 97.4 0.0011 2.4E-08 63.7 10.2 53 260-321 12-64 (194)
210 COG1889 NOP1 Fibrillarin-like 97.4 0.0029 6.2E-08 62.0 12.8 63 258-323 73-135 (231)
211 KOG3420 Predicted RNA methylas 97.4 0.00016 3.4E-09 67.3 3.7 58 260-320 47-104 (185)
212 COG0286 HsdM Type I restrictio 97.3 0.00079 1.7E-08 74.4 9.7 73 240-312 165-240 (489)
213 PF01564 Spermine_synth: Sperm 97.3 0.0029 6.3E-08 63.8 12.8 70 254-325 70-143 (246)
214 PF02005 TRM: N2,N2-dimethylgu 97.3 0.00086 1.9E-08 71.8 9.4 64 261-324 49-114 (377)
215 KOG1253 tRNA methyltransferase 97.3 0.00042 9.1E-09 75.3 6.3 66 258-323 106-172 (525)
216 PF08003 Methyltransf_9: Prote 97.3 0.0028 6E-08 65.7 12.0 44 259-304 113-156 (315)
217 TIGR00432 arcsn_tRNA_tgt tRNA- 97.2 0.00032 7E-09 78.0 5.1 73 122-226 465-537 (540)
218 PLN02232 ubiquinone biosynthes 97.2 0.0013 2.7E-08 61.8 7.5 45 420-484 39-83 (160)
219 PRK05429 gamma-glutamyl kinase 97.2 0.00043 9.3E-09 73.9 4.8 63 122-216 279-342 (372)
220 PF00891 Methyltransf_2: O-met 97.1 0.0061 1.3E-07 60.5 12.8 62 253-322 92-153 (241)
221 PRK13256 thiopurine S-methyltr 97.1 0.0038 8.2E-08 62.4 10.9 44 258-304 40-83 (226)
222 COG0030 KsgA Dimethyladenosine 97.1 0.0022 4.8E-08 65.2 9.4 79 241-324 9-88 (259)
223 KOG1661 Protein-L-isoaspartate 97.1 0.0027 5.8E-08 62.5 9.2 64 245-308 62-130 (237)
224 TIGR00478 tly hemolysin TlyA f 97.1 0.0014 3.1E-08 65.5 7.5 40 260-301 74-113 (228)
225 PF05219 DREV: DREV methyltran 97.0 0.004 8.7E-08 63.2 10.2 72 232-312 58-138 (265)
226 KOG1975 mRNA cap methyltransfe 97.0 0.0018 3.9E-08 67.3 7.6 57 250-310 108-164 (389)
227 KOG2730 Methylase [General fun 97.0 0.0017 3.8E-08 64.2 6.9 62 261-325 94-156 (263)
228 PRK11760 putative 23S rRNA C24 97.0 0.0023 5E-08 67.4 7.9 35 259-296 209-243 (357)
229 PF05185 PRMT5: PRMT5 arginine 97.0 0.00053 1.2E-08 74.9 3.4 62 262-323 187-252 (448)
230 PF06080 DUF938: Protein of un 96.9 0.0057 1.2E-07 60.2 10.1 62 260-322 24-86 (204)
231 COG1867 TRM1 N2,N2-dimethylgua 96.9 0.013 2.7E-07 62.2 12.5 74 250-324 41-114 (380)
232 KOG3010 Methyltransferase [Gen 96.8 0.0044 9.6E-08 62.2 8.5 53 249-304 20-73 (261)
233 PF13578 Methyltransf_24: Meth 96.8 0.00073 1.6E-08 58.4 2.7 58 266-324 1-61 (106)
234 PRK04270 H/ACA RNA-protein com 96.8 0.0017 3.6E-08 67.5 5.4 73 122-226 224-296 (300)
235 COG3963 Phospholipid N-methylt 96.7 0.018 3.9E-07 55.1 11.2 64 255-323 42-105 (194)
236 COG0275 Predicted S-adenosylme 96.7 0.011 2.3E-07 61.3 10.3 70 253-323 15-84 (314)
237 PF01795 Methyltransf_5: MraW 96.7 0.0027 5.8E-08 66.2 5.6 69 253-323 12-80 (310)
238 TIGR03439 methyl_EasF probable 96.6 0.035 7.6E-07 58.3 13.3 93 229-324 47-144 (319)
239 TIGR00425 CBF5 rRNA pseudourid 96.5 0.0033 7.2E-08 65.9 5.4 74 122-227 236-309 (322)
240 KOG2361 Predicted methyltransf 96.5 0.002 4.4E-08 64.6 3.2 66 240-308 53-119 (264)
241 PF10294 Methyltransf_16: Puta 96.4 0.0089 1.9E-07 56.9 6.9 50 259-310 43-92 (173)
242 COG1370 Prefoldin, molecular c 96.3 0.0072 1.6E-07 56.2 5.7 75 120-226 77-151 (155)
243 TIGR01027 proB glutamate 5-kin 96.3 0.0048 1E-07 65.8 5.1 63 122-216 271-334 (363)
244 TIGR01444 fkbM_fam methyltrans 96.3 0.016 3.5E-07 52.3 7.6 57 264-321 1-57 (143)
245 KOG1499 Protein arginine N-met 96.2 0.021 4.5E-07 60.2 9.2 57 261-320 60-117 (346)
246 PF00398 RrnaAD: Ribosomal RNA 96.2 0.011 2.5E-07 59.8 7.2 67 253-324 22-88 (262)
247 COG4076 Predicted RNA methylas 96.2 0.0086 1.9E-07 58.2 5.6 58 263-323 34-91 (252)
248 COG0421 SpeE Spermidine syntha 96.2 0.076 1.7E-06 54.8 13.0 67 256-324 72-142 (282)
249 PRK10611 chemotaxis methyltran 96.0 0.028 6.1E-07 58.1 8.9 42 263-304 117-165 (287)
250 KOG4300 Predicted methyltransf 96.0 0.016 3.4E-07 57.2 6.5 56 263-320 78-134 (252)
251 COG1549 Queuine tRNA-ribosyltr 96.0 0.0062 1.3E-07 66.4 4.0 180 5-226 296-515 (519)
252 COG4976 Predicted methyltransf 96.0 0.012 2.6E-07 58.9 5.5 44 257-303 121-164 (287)
253 KOG0820 Ribosomal RNA adenine 95.9 0.04 8.8E-07 56.4 9.4 65 256-323 53-118 (315)
254 COG1064 AdhP Zn-dependent alco 95.8 0.055 1.2E-06 57.2 10.0 51 257-313 162-213 (339)
255 PF13679 Methyltransf_32: Meth 95.6 0.037 8.1E-07 50.8 7.1 62 259-320 23-90 (141)
256 COG0500 SmtA SAM-dependent met 95.6 0.19 4.1E-06 41.9 10.9 38 265-303 52-89 (257)
257 PF05724 TPMT: Thiopurine S-me 95.5 0.047 1E-06 54.2 7.7 43 257-302 33-75 (218)
258 cd00315 Cyt_C5_DNA_methylase C 95.4 0.029 6.4E-07 57.4 6.2 41 264-306 2-42 (275)
259 TIGR00497 hsdM type I restrict 95.3 0.18 3.9E-06 56.0 12.5 67 240-306 194-265 (501)
260 PF04445 SAM_MT: Putative SAM- 95.3 0.042 9.1E-07 55.2 6.7 51 252-305 64-116 (234)
261 PF01739 CheR: CheR methyltran 95.1 0.013 2.8E-07 57.3 2.3 43 262-304 32-82 (196)
262 PF04816 DUF633: Family of unk 95.0 0.2 4.4E-06 49.4 10.5 58 265-323 1-59 (205)
263 PF01234 NNMT_PNMT_TEMT: NNMT/ 95.0 0.039 8.5E-07 56.2 5.5 48 259-309 54-102 (256)
264 COG3897 Predicted methyltransf 94.9 0.03 6.5E-07 54.8 4.1 55 261-318 79-133 (218)
265 PRK04148 hypothetical protein; 94.8 0.098 2.1E-06 48.3 7.2 54 260-323 15-69 (134)
266 PF10354 DUF2431: Domain of un 94.6 1 2.2E-05 42.9 13.8 81 422-511 72-152 (166)
267 COG4798 Predicted methyltransf 94.5 0.41 8.8E-06 47.1 10.9 41 256-296 43-83 (238)
268 PF00107 ADH_zinc_N: Zinc-bind 94.3 0.095 2.1E-06 46.3 5.7 35 273-313 3-37 (130)
269 COG1568 Predicted methyltransf 94.0 0.34 7.4E-06 49.9 9.6 61 261-323 152-212 (354)
270 KOG1227 Putative methyltransfe 93.9 0.036 7.8E-07 57.4 2.5 49 261-311 194-243 (351)
271 TIGR02822 adh_fam_2 zinc-bindi 93.7 0.58 1.3E-05 48.6 11.1 52 255-312 159-211 (329)
272 PF08123 DOT1: Histone methyla 93.6 0.61 1.3E-05 46.0 10.4 51 255-306 36-86 (205)
273 PF09243 Rsm22: Mitochondrial 93.6 0.28 6E-06 50.3 8.4 47 263-309 35-81 (274)
274 COG1189 Predicted rRNA methyla 93.5 0.33 7.1E-06 49.0 8.4 37 261-299 79-115 (245)
275 PF03059 NAS: Nicotianamine sy 93.5 0.58 1.3E-05 48.3 10.5 60 263-322 122-184 (276)
276 PRK11524 putative methyltransf 93.5 0.29 6.2E-06 50.3 8.2 60 421-485 23-82 (284)
277 PRK09880 L-idonate 5-dehydroge 93.4 0.81 1.8E-05 47.6 11.7 50 258-313 166-217 (343)
278 COG1063 Tdh Threonine dehydrog 93.3 0.73 1.6E-05 48.7 11.3 45 258-303 165-210 (350)
279 PF05891 Methyltransf_PK: AdoM 93.2 0.31 6.6E-06 48.6 7.5 43 261-305 55-97 (218)
280 PRK13402 gamma-glutamyl kinase 93.0 0.12 2.6E-06 55.4 4.7 63 122-216 275-338 (368)
281 PF06962 rRNA_methylase: Putat 93.0 0.38 8.2E-06 44.8 7.5 33 288-320 1-34 (140)
282 COG1352 CheR Methylase of chem 92.8 0.2 4.4E-06 51.4 5.8 42 262-303 97-146 (268)
283 TIGR03451 mycoS_dep_FDH mycoth 92.6 1.1 2.4E-05 46.8 11.4 51 256-312 171-223 (358)
284 PRK00536 speE spermidine synth 92.2 4 8.7E-05 41.9 14.3 51 254-308 66-116 (262)
285 KOG1500 Protein arginine N-met 92.1 0.84 1.8E-05 48.3 9.4 48 261-311 177-224 (517)
286 KOG2782 Putative SAM dependent 91.9 0.1 2.2E-06 51.9 2.4 47 253-300 35-81 (303)
287 cd08281 liver_ADH_like1 Zinc-d 91.9 1.3 2.8E-05 46.6 10.9 51 256-312 186-238 (371)
288 PF05148 Methyltransf_8: Hypot 91.8 0.41 8.9E-06 47.5 6.4 64 420-507 117-181 (219)
289 PF00145 DNA_methylase: C-5 cy 91.4 0.38 8.3E-06 48.9 6.0 51 264-323 2-52 (335)
290 TIGR03201 dearomat_had 6-hydro 91.0 3 6.5E-05 43.4 12.5 50 257-312 162-212 (349)
291 PF03141 Methyltransf_29: Puta 90.9 0.21 4.5E-06 55.1 3.6 48 420-486 176-223 (506)
292 PRK10309 galactitol-1-phosphat 90.8 2 4.3E-05 44.5 10.8 50 256-312 155-207 (347)
293 TIGR03366 HpnZ_proposed putati 90.7 2.9 6.3E-05 42.2 11.7 51 256-312 115-167 (280)
294 KOG2078 tRNA modification enzy 90.1 0.27 5.8E-06 53.2 3.6 65 260-327 248-314 (495)
295 PRK13699 putative methylase; P 90.1 0.6 1.3E-05 46.6 5.9 73 421-502 16-88 (227)
296 cd08283 FDH_like_1 Glutathione 90.0 2.4 5.2E-05 45.0 10.8 49 255-304 178-227 (386)
297 TIGR02825 B4_12hDH leukotriene 89.7 3.6 7.8E-05 42.1 11.5 53 256-313 133-186 (325)
298 cd08237 ribitol-5-phosphate_DH 89.6 3 6.4E-05 43.5 11.0 44 258-303 160-206 (341)
299 cd08239 THR_DH_like L-threonin 89.6 3.4 7.4E-05 42.5 11.3 54 254-313 156-211 (339)
300 KOG1709 Guanidinoacetate methy 89.5 3.4 7.4E-05 41.4 10.4 44 260-305 100-143 (271)
301 PF01555 N6_N4_Mtase: DNA meth 89.1 0.76 1.6E-05 44.0 5.7 41 260-303 190-230 (231)
302 PRK12939 short chain dehydroge 89.1 7 0.00015 37.9 12.5 61 261-323 6-67 (250)
303 PLN02740 Alcohol dehydrogenase 89.1 3.6 7.8E-05 43.6 11.2 51 256-312 193-245 (381)
304 PF04989 CmcI: Cephalosporin h 88.3 1 2.2E-05 44.6 5.9 80 240-322 10-95 (206)
305 cd08230 glucose_DH Glucose deh 88.3 3 6.5E-05 43.4 9.9 46 259-312 170-221 (355)
306 PRK09424 pntA NAD(P) transhydr 88.2 3.4 7.4E-05 46.2 10.7 50 258-313 161-211 (509)
307 PRK07102 short chain dehydroge 87.1 11 0.00024 36.7 12.6 59 264-323 3-62 (243)
308 cd08295 double_bond_reductase_ 87.0 6.9 0.00015 40.3 11.6 54 256-313 146-200 (338)
309 cd08294 leukotriene_B4_DH_like 87.0 4.6 9.9E-05 41.0 10.1 53 256-313 138-191 (329)
310 PF05971 Methyltransf_10: Prot 86.9 2 4.3E-05 44.9 7.4 57 262-319 103-161 (299)
311 PRK05786 fabG 3-ketoacyl-(acyl 86.9 13 0.00029 35.7 12.9 59 261-322 4-63 (238)
312 KOG3115 Methyltransferase-like 86.8 1.9 4.1E-05 42.8 6.7 61 262-323 61-128 (249)
313 PRK07533 enoyl-(acyl carrier p 86.7 14 0.0003 36.7 13.2 60 261-322 9-70 (258)
314 PF10237 N6-adenineMlase: Prob 86.6 0.84 1.8E-05 43.5 4.1 65 423-512 84-148 (162)
315 PRK07576 short chain dehydroge 86.4 15 0.00033 36.5 13.4 60 261-322 8-68 (264)
316 KOG1197 Predicted quinone oxid 86.4 7 0.00015 40.3 10.6 79 243-326 127-208 (336)
317 PLN02827 Alcohol dehydrogenase 86.4 6.9 0.00015 41.5 11.5 50 257-312 189-240 (378)
318 PRK06914 short chain dehydroge 86.3 12 0.00026 37.3 12.6 61 262-323 3-65 (280)
319 KOG1269 SAM-dependent methyltr 86.2 1.6 3.5E-05 46.8 6.5 56 255-312 104-159 (364)
320 PRK07326 short chain dehydroge 86.2 12 0.00025 36.1 12.1 59 261-322 5-64 (237)
321 PRK08945 putative oxoacyl-(acy 85.9 14 0.0003 36.0 12.6 63 258-321 8-71 (247)
322 PHA01634 hypothetical protein 85.8 2 4.3E-05 39.7 5.9 47 261-309 28-74 (156)
323 COG2384 Predicted SAM-dependen 85.6 16 0.00034 36.8 12.5 63 260-323 15-78 (226)
324 cd08293 PTGR2 Prostaglandin re 85.4 7.1 0.00015 40.1 10.7 51 258-313 149-204 (345)
325 cd08254 hydroxyacyl_CoA_DH 6-h 84.8 7.7 0.00017 39.3 10.5 50 257-312 161-211 (338)
326 PRK07677 short chain dehydroge 84.6 14 0.00029 36.3 11.8 59 262-322 1-60 (252)
327 PRK12429 3-hydroxybutyrate deh 84.3 17 0.00038 35.2 12.4 59 262-322 4-63 (258)
328 cd08300 alcohol_DH_class_III c 83.9 14 0.00031 38.7 12.3 51 256-312 181-233 (368)
329 PRK07831 short chain dehydroge 83.7 23 0.00049 34.9 13.1 63 261-323 16-80 (262)
330 PRK05867 short chain dehydroge 83.6 14 0.00031 36.2 11.5 61 261-323 8-69 (253)
331 TIGR02818 adh_III_F_hyde S-(hy 83.6 11 0.00023 39.8 11.2 51 256-312 180-232 (368)
332 PLN03154 putative allyl alcoho 83.3 11 0.00024 39.4 11.1 52 257-313 154-207 (348)
333 COG0263 ProB Glutamate 5-kinas 83.0 1.4 3E-05 46.9 4.1 40 124-163 280-320 (369)
334 PRK07666 fabG 3-ketoacyl-(acyl 82.6 33 0.00072 33.1 13.6 60 262-323 7-67 (239)
335 PRK08594 enoyl-(acyl carrier p 82.6 26 0.00057 34.8 13.1 63 261-323 6-70 (257)
336 PRK07063 short chain dehydroge 82.6 30 0.00064 34.0 13.4 60 262-322 7-68 (260)
337 PF11599 AviRa: RRNA methyltra 82.5 3.3 7.1E-05 41.5 6.2 66 244-309 31-100 (246)
338 PRK06139 short chain dehydroge 82.5 20 0.00044 37.5 12.7 60 261-322 6-66 (330)
339 PRK11524 putative methyltransf 82.3 2.8 6.1E-05 43.0 6.1 45 260-307 207-251 (284)
340 PRK06949 short chain dehydroge 82.0 26 0.00056 34.2 12.6 61 260-322 7-68 (258)
341 PRK07523 gluconate 5-dehydroge 81.8 33 0.00071 33.6 13.3 61 261-323 9-70 (255)
342 PRK08063 enoyl-(acyl carrier p 81.8 32 0.00069 33.4 13.1 61 261-323 3-65 (250)
343 KOG3178 Hydroxyindole-O-methyl 81.8 10 0.00022 40.3 10.0 51 251-304 163-217 (342)
344 PRK08324 short chain dehydroge 81.7 20 0.00044 41.3 13.4 59 261-322 421-480 (681)
345 PRK06124 gluconate 5-dehydroge 81.4 44 0.00095 32.6 14.0 60 261-322 10-70 (256)
346 PRK12829 short chain dehydroge 81.3 22 0.00049 34.7 11.9 61 259-323 8-69 (264)
347 PRK06101 short chain dehydroge 81.3 36 0.00078 33.1 13.4 51 268-323 6-57 (240)
348 PRK12937 short chain dehydroge 81.2 33 0.00071 33.1 12.9 60 262-323 5-66 (245)
349 cd08238 sorbose_phosphate_red 81.1 9.9 0.00021 40.8 10.0 47 257-304 171-221 (410)
350 cd08301 alcohol_DH_plants Plan 81.0 21 0.00045 37.4 12.3 51 256-312 182-234 (369)
351 PRK08415 enoyl-(acyl carrier p 80.5 49 0.0011 33.4 14.3 60 262-323 5-66 (274)
352 PF03721 UDPG_MGDP_dh_N: UDP-g 80.4 5.9 0.00013 38.3 7.2 40 463-503 101-140 (185)
353 PRK08085 gluconate 5-dehydroge 80.1 29 0.00063 33.9 12.3 59 262-322 9-68 (254)
354 KOG1331 Predicted methyltransf 80.0 5.5 0.00012 41.3 7.1 41 253-298 36-77 (293)
355 PRK13699 putative methylase; P 79.9 4.3 9.3E-05 40.5 6.3 48 259-309 161-208 (227)
356 PF01555 N6_N4_Mtase: DNA meth 79.7 1.4 2.9E-05 42.3 2.6 75 426-506 1-78 (231)
357 COG0604 Qor NADPH:quinone redu 79.5 18 0.00039 38.0 11.1 52 257-313 138-190 (326)
358 PRK13394 3-hydroxybutyrate deh 79.3 37 0.00079 33.1 12.7 61 261-323 6-67 (262)
359 PRK07109 short chain dehydroge 79.0 35 0.00075 35.6 13.0 61 261-323 7-68 (334)
360 PRK08643 acetoin reductase; Va 78.9 42 0.00092 32.7 13.0 59 263-323 3-62 (256)
361 PRK06505 enoyl-(acyl carrier p 78.8 42 0.00091 33.7 13.2 61 261-323 6-68 (271)
362 PRK07231 fabG 3-ketoacyl-(acyl 78.7 32 0.0007 33.2 12.0 59 262-323 5-64 (251)
363 PRK12826 3-ketoacyl-(acyl-carr 78.2 52 0.0011 31.7 13.3 59 262-322 6-65 (251)
364 COG2933 Predicted SAM-dependen 78.2 5.5 0.00012 41.1 6.4 55 260-324 210-264 (358)
365 cd08277 liver_alcohol_DH_like 78.2 26 0.00056 36.7 11.9 50 257-312 180-231 (365)
366 PRK07890 short chain dehydroge 78.2 51 0.0011 32.0 13.3 60 261-322 4-64 (258)
367 TIGR00675 dcm DNA-methyltransf 77.9 4 8.6E-05 42.7 5.6 40 265-306 1-40 (315)
368 PRK08278 short chain dehydroge 77.8 27 0.00058 35.0 11.4 61 261-323 5-73 (273)
369 cd08243 quinone_oxidoreductase 77.8 24 0.00052 35.2 11.1 48 258-312 139-189 (320)
370 PRK08159 enoyl-(acyl carrier p 77.8 68 0.0015 32.2 14.4 60 261-322 9-70 (272)
371 COG2961 ComJ Protein involved 77.7 61 0.0013 33.4 13.5 72 246-325 71-147 (279)
372 PRK08213 gluconate 5-dehydroge 77.6 46 0.00099 32.6 12.8 60 261-322 11-71 (259)
373 KOG2352 Predicted spermine/spe 77.4 12 0.00025 41.6 9.1 55 264-323 51-107 (482)
374 PRK06197 short chain dehydroge 77.1 40 0.00087 34.2 12.6 62 261-323 15-78 (306)
375 PRK05599 hypothetical protein; 76.9 48 0.001 32.6 12.7 55 269-323 6-60 (246)
376 PRK08251 short chain dehydroge 76.8 72 0.0016 30.9 13.9 60 263-323 3-64 (248)
377 PF00106 adh_short: short chai 76.7 27 0.00058 31.6 10.1 53 270-323 7-63 (167)
378 PRK09242 tropinone reductase; 76.6 62 0.0013 31.6 13.5 61 261-322 8-70 (257)
379 PRK06603 enoyl-(acyl carrier p 76.5 64 0.0014 32.0 13.6 60 262-323 8-69 (260)
380 PRK07984 enoyl-(acyl carrier p 76.4 53 0.0011 32.9 13.1 58 262-322 6-66 (262)
381 PRK07832 short chain dehydroge 76.4 43 0.00093 33.3 12.4 53 270-322 7-60 (272)
382 PRK08339 short chain dehydroge 76.4 69 0.0015 31.8 13.9 61 262-323 8-69 (263)
383 PRK07062 short chain dehydroge 76.2 82 0.0018 30.9 14.6 62 261-323 7-70 (265)
384 COG0677 WecC UDP-N-acetyl-D-ma 76.1 19 0.00042 39.2 10.0 43 463-506 109-151 (436)
385 PRK06181 short chain dehydroge 75.9 68 0.0015 31.4 13.6 57 264-322 3-60 (263)
386 PRK06172 short chain dehydroge 74.7 78 0.0017 30.8 13.6 60 262-323 7-67 (253)
387 TIGR03026 NDP-sugDHase nucleot 74.7 62 0.0013 34.9 13.8 35 466-501 104-138 (411)
388 PRK06079 enoyl-(acyl carrier p 74.5 61 0.0013 32.0 12.8 59 261-323 6-66 (252)
389 cd08232 idonate-5-DH L-idonate 74.5 22 0.00048 36.3 10.0 51 256-312 160-212 (339)
390 TIGR02819 fdhA_non_GSH formald 74.1 36 0.00078 36.5 11.8 49 257-312 181-232 (393)
391 PRK05653 fabG 3-ketoacyl-(acyl 74.0 66 0.0014 30.7 12.6 59 262-322 5-64 (246)
392 PRK05875 short chain dehydroge 74.0 76 0.0017 31.4 13.5 61 261-322 6-68 (276)
393 COG4262 Predicted spermidine s 73.9 47 0.001 36.0 12.0 44 260-304 288-331 (508)
394 KOG2940 Predicted methyltransf 73.5 3.8 8.3E-05 41.4 3.8 51 250-302 60-111 (325)
395 cd05279 Zn_ADH1 Liver alcohol 73.5 29 0.00062 36.4 10.7 51 256-312 178-230 (365)
396 PRK07478 short chain dehydroge 73.4 89 0.0019 30.4 13.6 59 262-322 6-65 (254)
397 cd08233 butanediol_DH_like (2R 73.4 37 0.0008 35.1 11.4 52 255-312 166-219 (351)
398 PRK05717 oxidoreductase; Valid 73.3 58 0.0013 31.8 12.3 58 261-323 9-67 (255)
399 PRK08557 hypothetical protein; 72.9 10 0.00023 41.4 7.3 155 123-321 77-244 (417)
400 PRK09072 short chain dehydroge 72.8 80 0.0017 31.0 13.2 58 262-322 5-63 (263)
401 TIGR03206 benzo_BadH 2-hydroxy 72.8 91 0.002 30.0 13.4 59 262-322 3-62 (250)
402 PRK01747 mnmC bifunctional tRN 72.5 30 0.00065 39.8 11.4 46 261-306 57-113 (662)
403 PRK10083 putative oxidoreducta 72.3 39 0.00085 34.5 11.2 51 256-312 155-208 (339)
404 PRK06196 oxidoreductase; Provi 72.1 64 0.0014 33.0 12.7 56 261-322 25-81 (315)
405 cd08286 FDH_like_ADH2 formalde 72.0 36 0.00077 35.0 10.9 51 256-312 161-213 (345)
406 cd08231 MDR_TM0436_like Hypoth 71.9 37 0.0008 35.2 11.0 48 260-313 176-225 (361)
407 PF11899 DUF3419: Protein of u 71.7 11 0.00024 40.7 7.2 61 240-303 13-74 (380)
408 cd08296 CAD_like Cinnamyl alco 71.7 40 0.00087 34.6 11.1 52 255-312 157-209 (333)
409 KOG0023 Alcohol dehydrogenase, 71.3 33 0.00072 36.5 10.2 52 258-314 178-230 (360)
410 PRK05855 short chain dehydroge 71.2 40 0.00086 37.0 11.6 60 262-323 315-375 (582)
411 PRK05872 short chain dehydroge 71.1 75 0.0016 32.2 12.8 58 261-322 8-67 (296)
412 PF13561 adh_short_C2: Enoyl-( 71.0 15 0.00031 35.9 7.3 48 272-322 5-54 (241)
413 PRK06194 hypothetical protein; 70.9 63 0.0014 32.2 12.1 60 262-323 6-66 (287)
414 cd08236 sugar_DH NAD(P)-depend 70.6 37 0.0008 34.8 10.6 46 255-302 153-200 (343)
415 PRK09291 short chain dehydroge 70.6 81 0.0017 30.6 12.5 58 263-322 3-61 (257)
416 TIGR01963 PHB_DH 3-hydroxybuty 70.4 1.1E+02 0.0023 29.6 13.4 58 264-323 3-61 (255)
417 PRK06198 short chain dehydroge 70.4 67 0.0015 31.3 12.0 60 261-322 5-66 (260)
418 PRK05876 short chain dehydroge 70.2 82 0.0018 31.6 12.8 60 262-323 6-66 (275)
419 PRK08267 short chain dehydroge 70.1 55 0.0012 32.1 11.3 55 265-323 4-59 (260)
420 COG1062 AdhC Zn-dependent alco 69.4 12 0.00026 39.9 6.6 57 253-313 177-233 (366)
421 PRK06128 oxidoreductase; Provi 69.2 1.2E+02 0.0027 30.7 14.0 61 261-323 54-117 (300)
422 COG0270 Dcm Site-specific DNA 69.2 12 0.00027 39.2 6.7 42 263-306 4-45 (328)
423 cd05278 FDH_like Formaldehyde 69.0 33 0.00071 35.1 9.7 44 256-302 162-208 (347)
424 PRK09135 pteridine reductase; 68.8 1.1E+02 0.0024 29.3 13.0 62 261-323 5-68 (249)
425 PRK06182 short chain dehydroge 68.7 67 0.0015 31.8 11.7 53 262-322 3-56 (273)
426 PRK07985 oxidoreductase; Provi 68.7 1.1E+02 0.0023 31.2 13.4 61 261-323 48-111 (294)
427 PRK07454 short chain dehydroge 68.5 87 0.0019 30.2 12.2 60 262-323 6-66 (241)
428 PRK07889 enoyl-(acyl carrier p 68.3 93 0.002 30.7 12.6 61 261-323 6-68 (256)
429 cd08278 benzyl_alcohol_DH Benz 68.2 43 0.00093 35.1 10.6 50 256-312 181-233 (365)
430 TIGR02632 RhaD_aldol-ADH rhamn 68.0 1.3E+02 0.0029 34.8 15.4 85 238-323 385-476 (676)
431 cd08284 FDH_like_2 Glutathione 67.9 60 0.0013 33.2 11.4 49 257-311 163-213 (344)
432 PRK06940 short chain dehydroge 67.7 1.4E+02 0.003 29.9 14.1 57 264-323 4-60 (275)
433 KOG3201 Uncharacterized conser 67.1 12 0.00025 36.2 5.3 49 261-309 29-77 (201)
434 cd08285 NADP_ADH NADP(H)-depen 67.0 64 0.0014 33.3 11.5 51 255-312 160-213 (351)
435 TIGR02415 23BDH acetoin reduct 66.8 94 0.002 30.1 12.1 52 270-322 7-59 (254)
436 PRK05993 short chain dehydroge 66.5 79 0.0017 31.6 11.8 53 262-322 4-57 (277)
437 PRK07775 short chain dehydroge 66.5 96 0.0021 30.9 12.3 58 264-323 12-70 (274)
438 cd08291 ETR_like_1 2-enoyl thi 66.0 45 0.00097 34.0 10.0 47 261-313 142-191 (324)
439 PRK07067 sorbitol dehydrogenas 66.0 56 0.0012 31.9 10.4 57 262-323 6-63 (257)
440 TIGR00692 tdh L-threonine 3-de 65.9 52 0.0011 33.8 10.6 49 258-312 158-208 (340)
441 PRK06701 short chain dehydroge 65.8 1.4E+02 0.003 30.3 13.5 61 261-323 45-107 (290)
442 PRK05884 short chain dehydroge 65.5 99 0.0021 29.9 11.9 48 269-322 6-54 (223)
443 KOG1562 Spermidine synthase [A 65.5 27 0.00059 36.7 8.1 62 262-324 122-187 (337)
444 PRK06935 2-deoxy-D-gluconate 3 65.5 61 0.0013 31.8 10.5 60 261-323 14-74 (258)
445 PRK07774 short chain dehydroge 65.4 1.1E+02 0.0023 29.6 12.2 60 261-322 5-65 (250)
446 PRK08261 fabG 3-ketoacyl-(acyl 65.3 1.1E+02 0.0024 33.0 13.4 59 259-322 207-266 (450)
447 PRK07024 short chain dehydroge 65.2 86 0.0019 30.7 11.6 57 264-323 4-61 (257)
448 cd08298 CAD2 Cinnamyl alcohol 64.9 64 0.0014 32.7 10.9 51 255-311 161-212 (329)
449 PRK05650 short chain dehydroge 64.7 1.3E+02 0.0028 29.7 12.8 57 264-322 2-59 (270)
450 PRK07060 short chain dehydroge 64.7 1.2E+02 0.0025 29.2 12.2 41 261-302 8-49 (245)
451 PLN02586 probable cinnamyl alc 64.6 33 0.00071 36.1 8.9 49 259-312 181-230 (360)
452 PF06859 Bin3: Bicoid-interact 64.5 6.6 0.00014 35.2 3.0 20 461-480 23-42 (110)
453 TIGR01832 kduD 2-deoxy-D-gluco 64.4 1.1E+02 0.0024 29.5 12.1 59 261-323 4-63 (248)
454 cd08279 Zn_ADH_class_III Class 64.3 80 0.0017 32.9 11.7 51 256-312 177-229 (363)
455 COG5459 Predicted rRNA methyla 64.2 6.9 0.00015 41.9 3.6 53 243-296 90-148 (484)
456 PRK06482 short chain dehydroge 64.1 71 0.0015 31.6 10.8 55 264-323 4-59 (276)
457 PLN02702 L-idonate 5-dehydroge 64.0 86 0.0019 32.6 11.9 53 255-313 175-229 (364)
458 PF04378 RsmJ: Ribosomal RNA s 63.8 29 0.00064 35.3 7.9 56 268-326 62-117 (245)
459 PRK06180 short chain dehydroge 63.8 82 0.0018 31.4 11.3 56 262-322 4-60 (277)
460 PRK08340 glucose-1-dehydrogena 62.9 1.6E+02 0.0034 28.9 13.6 56 264-322 2-58 (259)
461 KOG1501 Arginine N-methyltrans 62.9 14 0.0003 40.8 5.6 55 264-320 69-124 (636)
462 PRK12859 3-ketoacyl-(acyl-carr 62.8 1.6E+02 0.0035 28.9 13.3 61 261-322 5-78 (256)
463 PRK10538 malonic semialdehyde 62.7 1.1E+02 0.0024 29.8 11.7 50 270-323 7-57 (248)
464 PRK06500 short chain dehydroge 62.6 1.5E+02 0.0032 28.6 12.5 55 262-321 6-61 (249)
465 cd08242 MDR_like Medium chain 62.6 70 0.0015 32.3 10.6 51 256-312 150-201 (319)
466 KOG0022 Alcohol dehydrogenase, 61.9 18 0.0004 38.3 6.1 57 253-313 184-240 (375)
467 cd08265 Zn_ADH3 Alcohol dehydr 61.9 65 0.0014 34.0 10.6 50 257-312 199-250 (384)
468 cd05281 TDH Threonine dehydrog 61.7 65 0.0014 33.1 10.3 49 258-312 160-210 (341)
469 PF07669 Eco57I: Eco57I restri 61.4 21 0.00045 31.2 5.6 76 425-508 2-80 (106)
470 PRK12384 sorbitol-6-phosphate 61.3 1.6E+02 0.0034 28.7 12.6 60 262-322 2-63 (259)
471 PLN02178 cinnamyl-alcohol dehy 61.3 55 0.0012 34.8 9.9 49 259-312 176-225 (375)
472 KOG3045 Predicted RNA methylas 61.2 23 0.0005 36.7 6.5 43 420-484 223-266 (325)
473 PRK06997 enoyl-(acyl carrier p 60.9 1.5E+02 0.0033 29.4 12.5 60 261-322 5-66 (260)
474 cd08251 polyketide_synthase po 60.8 1.2E+02 0.0027 29.6 11.8 51 255-312 114-167 (303)
475 PRK10458 DNA cytosine methylas 60.8 35 0.00076 37.9 8.5 43 261-305 87-129 (467)
476 PRK05693 short chain dehydroge 60.7 1.2E+02 0.0025 30.1 11.7 48 268-322 6-54 (274)
477 PRK08589 short chain dehydroge 60.3 1.7E+02 0.0036 29.1 12.7 58 262-322 6-64 (272)
478 PF07279 DUF1442: Protein of u 60.3 46 0.001 33.3 8.4 62 261-322 41-106 (218)
479 cd08287 FDH_like_ADH3 formalde 60.2 87 0.0019 32.0 11.0 51 256-312 163-215 (345)
480 cd08297 CAD3 Cinnamyl alcohol 60.0 1.1E+02 0.0024 31.1 11.7 52 255-312 159-212 (341)
481 PRK06113 7-alpha-hydroxysteroi 60.0 1.8E+02 0.0038 28.4 13.7 61 261-323 10-71 (255)
482 cd08269 Zn_ADH9 Alcohol dehydr 59.9 1E+02 0.0022 30.7 11.2 52 255-312 123-176 (312)
483 PRK08263 short chain dehydroge 59.7 1.4E+02 0.003 29.6 12.1 56 263-323 4-60 (275)
484 TIGR02817 adh_fam_1 zinc-bindi 59.5 85 0.0018 31.9 10.7 47 262-313 149-197 (336)
485 PRK07074 short chain dehydroge 59.5 1.4E+02 0.003 29.1 11.8 56 264-323 4-60 (257)
486 cd08292 ETR_like_2 2-enoyl thi 58.8 97 0.0021 31.1 10.9 46 255-302 133-180 (324)
487 cd08274 MDR9 Medium chain dehy 58.7 1E+02 0.0022 31.5 11.1 49 256-312 172-223 (350)
488 PRK09422 ethanol-active dehydr 58.4 1.3E+02 0.0028 30.6 11.8 52 255-312 156-209 (338)
489 cd05285 sorbitol_DH Sorbitol d 58.3 1E+02 0.0022 31.6 11.1 52 255-312 156-209 (343)
490 PRK06138 short chain dehydroge 58.2 1.5E+02 0.0032 28.6 11.7 58 262-322 5-63 (252)
491 cd05288 PGDH Prostaglandin deh 57.2 91 0.002 31.5 10.4 45 257-302 141-186 (329)
492 cd08256 Zn_ADH2 Alcohol dehydr 57.1 1.1E+02 0.0023 31.6 11.1 52 255-312 168-221 (350)
493 PRK08177 short chain dehydroge 56.9 70 0.0015 30.7 9.1 48 268-321 6-54 (225)
494 PRK08690 enoyl-(acyl carrier p 56.9 1.6E+02 0.0036 29.1 12.0 61 261-323 5-67 (261)
495 cd08289 MDR_yhfp_like Yhfp put 56.8 81 0.0018 31.8 9.9 47 261-312 146-193 (326)
496 PRK08265 short chain dehydroge 56.7 2E+02 0.0043 28.3 12.5 56 262-322 6-62 (261)
497 PRK07502 cyclohexadienyl dehyd 56.6 1.9E+02 0.0042 29.6 12.8 47 464-515 82-129 (307)
498 PRK06200 2,3-dihydroxy-2,3-dih 56.1 1.4E+02 0.0031 29.2 11.4 57 261-322 5-62 (263)
499 PRK15182 Vi polysaccharide bio 56.1 2.8E+02 0.0062 30.3 14.5 33 271-303 13-45 (425)
500 PRK07041 short chain dehydroge 56.0 1.9E+02 0.0041 27.5 13.0 51 270-322 4-55 (230)
No 1
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=100.00 E-value=9.8e-73 Score=583.81 Aligned_cols=402 Identities=28% Similarity=0.414 Sum_probs=336.6
Q ss_pred CCCCcccccccccCHHHHHHHHHhhchhhHHHHHHHhcCCCCccEEEeecCCCCHHHHHHHHHHHHHhcCCCcccccccc
Q 009628 3 LSGRYSYSPLLRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSV 82 (530)
Q Consensus 3 ~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~pp~~~~iRVNTl~~~~~~~~~~L~~~~~~~~~~~~~~~~~~ 82 (530)
++++ +|+|.++|++++++|+...|+.++++++...+ .+-.+.++|.++-+...+..++.+....++. ....+++
T Consensus 7 ~~e~-~~~~~~~~~~e~~~~~~d~~~~~d~~~~~~~~-~e~~~~~l~~~~~~~~~~~~~e~~~~~~~~~----~~l~lp~ 80 (460)
T KOG1122|consen 7 DSEE-EYLPGSGSNPEVEDYFTDDFRDDDLDDIDLKL-IERKSRKLRKRESLEASEAEEELNTNTFEEG----DPLLLPT 80 (460)
T ss_pred cccc-ccCcCCCCCccchhhhccccCccchhhhhhhh-hhhHHHHHHHhhcccchhhHHHHhhcccccc----ccccCcc
Confidence 5677 99999999999999999999999999999999 9999999999999888887777766332211 0111222
Q ss_pred cc-ccCCCccccccCCCCCceEEEeCCCCccccCCCCCCCCCCeEEEcchhHHHHHhccccccCceeeccCCccCCCEEE
Q 009628 83 KG-RLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVA 161 (530)
Q Consensus 83 ~~-~~~~~~~~~~~~~~l~~~l~i~~~gp~~~~~~~~~~~~~k~ViVd~~~~eAVLrGA~v~aPGil~~~~~i~~Gd~Va 161 (530)
.+ .....+++..++..+-.+-++++.|+++-- ....+ +++..|+.++++||++|+||++.+.++++.++.+.
T Consensus 81 ~~~~~~~~~~P~L~~v~~~~~~~~~~l~dfk~l-----~~~~~--~~~~~~~~l~~~~~~~y~y~~~l~~~~~e~~~~~e 153 (460)
T KOG1122|consen 81 LEEEEEKDSVPDLQNVDLRIVELVPVLGDFKNL-----KEPGR--LRSEYCGQLKKDGAHYYAYGVFLAEKLMELFPLVE 153 (460)
T ss_pred cccccccccCCccchhhHHhhhhhhhhcchhcc-----ccccc--chhhHHHHHHhcccceechHHHHHHHhcccccHHH
Confidence 22 111223333444444555666777777521 12223 99999999999999999999999999999999999
Q ss_pred EEEcccCCcCCCCCcccccccccccCCCCCCCcccCCceEEeecccccCcccccccCCc----eeeecCCccccCCCccc
Q 009628 162 VSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEG----IAVDMHNRIFQLPSFYD 237 (530)
Q Consensus 162 V~~~~~~~~~~~~w~~~~~rg~~~~~~~~~~~~~~~~gv~Vg~Gia~mSreelf~~p~G----laV~~~~~v~~lP~~~~ 237 (530)
|+.+|++.++.+. ..+. ....+++.|.+...+++.+++..+-| ++++|.++++.+|.+.+
T Consensus 154 v~~~~e~~~~~rp--------~tir--------~ntlk~~rrd~~~~L~nrgv~~~pl~~ws~vgl~v~~s~vpigat~e 217 (460)
T KOG1122|consen 154 VYEFLEANEKPRP--------VTIR--------TNTLKTRRRDLAVELSNRGVNLDPLGKWSKVGLVVFDSVVPIGATPE 217 (460)
T ss_pred HHHHHHhhcCCCC--------eeEE--------ecccchhhhhHHHHHHhcccCcccccccccceEEEecCccccCCchh
Confidence 9999999998732 2221 12246677888888888898876555 78899999999999999
Q ss_pred cccceEEEeccchHHHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEE
Q 009628 238 VLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTY 317 (530)
Q Consensus 238 ~~~G~i~lQd~~S~v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~ 317 (530)
++.|++++|+++|++++++|+||||+|||||||||||||+|||+||+++|.|+|+|.+++|+..++.++.+||.++..+.
T Consensus 218 ~lag~~~LQ~~sS~Lpv~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~ 297 (460)
T KOG1122|consen 218 YLAGHYMLQNASSFLPVMALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVS 297 (460)
T ss_pred hcccceeeccCcccceeeecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988788
Q ss_pred EcchhHHHhhcCCCCCCCCccCCCCCccccccccccccccccccchhccCCCCCCcccccccccccccccccchhhhhhh
Q 009628 318 KLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKVSNEKGVERTYVSKADTRKN 397 (530)
Q Consensus 318 ~~Da~k~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 397 (530)
++|..+.
T Consensus 298 n~D~~ef------------------------------------------------------------------------- 304 (460)
T KOG1122|consen 298 NYDGREF------------------------------------------------------------------------- 304 (460)
T ss_pred ccCcccc-------------------------------------------------------------------------
Confidence 8876531
Q ss_pred hhhccCCCCCCccCCCcccCCCCCCCCCCCeEEEcCCCCCCCC--cccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCC
Q 009628 398 MRRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGL--RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPG 475 (530)
Q Consensus 398 ~~~~~~~~~~~~~~~g~~~~~~~f~~~sFDrVLlDaPCSglG~--rp~l~~~~~t~~~l~~~~~~Qr~ll~~A~~lLkpG 475 (530)
..+-|++ +||||||||||||+|+ +|.....+++.+++.+++.+||+||.+|+++||+|
T Consensus 305 -------------------~~~~~~~-~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~G 364 (460)
T KOG1122|consen 305 -------------------PEKEFPG-SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAG 364 (460)
T ss_pred -------------------cccccCc-ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCC
Confidence 0113555 9999999999999775 67776668889999999999999999999999999
Q ss_pred CEEEEEecCCCCCCCHHHHHHHHHhCCCceeecCCCCCCCCC-ccceEEcCC
Q 009628 476 GIIVYSTCTINPGENEALVRYALDRYKFLSLAPQHPRIGGPG-LVGRYEFPD 526 (530)
Q Consensus 476 G~LVYSTCSi~~~ENE~vV~~~L~~~~~~~l~~~~p~~g~pg-~~g~~~~~~ 526 (530)
|+||||||||+++|||+||+|||++||+++|+|+++.||++| +.|.+.+|+
T Consensus 365 GvLVYSTCSI~~~ENE~vV~yaL~K~p~~kL~p~~~~iG~~G~~~~~~~~ps 416 (460)
T KOG1122|consen 365 GVLVYSTCSITVEENEAVVDYALKKRPEVKLVPTGLDIGGEGRFRGGRFHPS 416 (460)
T ss_pred cEEEEEeeecchhhhHHHHHHHHHhCCceEeccccccCCCCCcccCcccCcc
Confidence 999999999999999999999999999999999999999999 668887776
No 2
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.5e-52 Score=434.52 Aligned_cols=262 Identities=35% Similarity=0.569 Sum_probs=217.8
Q ss_pred cccCHHHHHHHHHhhchhhHHHHHHHhcCCCCccEEEeecCCCCHHHHHHHHHHHHHhcCCCccccccccccccCCCccc
Q 009628 13 LRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTIS 92 (530)
Q Consensus 13 ~~~~~~v~~~l~~~~~~~~~~~~~~~l~~pp~~~~iRVNTl~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (530)
..+..-+.+++.+.||.+.++++++++.+||. .++||||++++++++.+.|... | +.
T Consensus 52 ~~~p~w~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~Rvn~lk~~~~~~~~~l~~~---------~-------------~~ 108 (355)
T COG0144 52 YSHPEWLVEKLPDALGEDEAEAIAAALLRPPP-RSLRVNTLKADVEELLEALEEA---------G-------------VL 108 (355)
T ss_pred ccCcHHHHHHHHHHcChHHHHHHHHHcCCCCC-eeEEEcCccCCHHHHHHHHhhc---------c-------------cc
Confidence 35677888999999998889999999999999 9999999999999999998854 2 00
Q ss_pred cccCCCCCceEEEeCCCCccccCCCCCCCCCCeEEEcchhHHHHHhccccccCceeeccCCccCCCEEEEEEcccCCcCC
Q 009628 93 ESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLD 172 (530)
Q Consensus 93 ~~~~~~l~~~l~i~~~gp~~~~~~~~~~~~~k~ViVd~~~~eAVLrGA~v~aPGil~~~~~i~~Gd~VaV~~~~~~~~~~ 172 (530)
.......++++.+...+
T Consensus 109 ~~~~~~~~~~~~i~~~~--------------------------------------------------------------- 125 (355)
T COG0144 109 DEKPWVLDEVLRIEASG--------------------------------------------------------------- 125 (355)
T ss_pred cccCCccccEEEecCCC---------------------------------------------------------------
Confidence 00001122222221111
Q ss_pred CCCcccccccccccCCCCCCCcccCCceEEeecccccCcccccccCCceeeecCCccccCCCccccccceEEEeccchHH
Q 009628 173 GGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIV 252 (530)
Q Consensus 173 ~~w~~~~~rg~~~~~~~~~~~~~~~~gv~Vg~Gia~mSreelf~~p~GlaV~~~~~v~~lP~~~~~~~G~i~lQd~~S~v 252 (530)
.+..+| ++.+|+|++||++||+
T Consensus 126 -------------------------------------------------------~~~~~~---~~~~G~~~vQd~sS~l 147 (355)
T COG0144 126 -------------------------------------------------------PIGRLP---EFAEGLIYVQDEASQL 147 (355)
T ss_pred -------------------------------------------------------CcccCh---hhhceEEEEcCHHHHH
Confidence 112233 3358999999999999
Q ss_pred HHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEE-EEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhHHHhhcCCC
Q 009628 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEV-VAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNES 331 (530)
Q Consensus 253 ~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~V-vA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k~v~~~~~~ 331 (530)
++++|+|+||++||||||||||||+|||++|.++|.+ +|+|++.+|+..++++++++|+.|+.++..|+.+...
T Consensus 148 ~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~----- 222 (355)
T COG0144 148 PALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAE----- 222 (355)
T ss_pred HHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccc-----
Confidence 9999999999999999999999999999999987766 9999999999999999999999999888888754210
Q ss_pred CCCCCccCCCCCccccccccccccccccccchhccCCCCCCcccccccccccccccccchhhhhhhhhhccCCCCCCccC
Q 009628 332 NDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKVSNEKGVERTYVSKADTRKNMRRMRNGPGRNQCL 411 (530)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 411 (530)
T Consensus 223 -------------------------------------------------------------------------------- 222 (355)
T COG0144 223 -------------------------------------------------------------------------------- 222 (355)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccCCCCCCCCCCCeEEEcCCCCCCCCc---ccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCC
Q 009628 412 GGRAENSKGFSPNSFDRVLLDAPCSALGLR---PRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPG 488 (530)
Q Consensus 412 ~g~~~~~~~f~~~sFDrVLlDaPCSglG~r---p~l~~~~~t~~~l~~~~~~Qr~ll~~A~~lLkpGG~LVYSTCSi~~~ 488 (530)
..+...+||+||+||||||+|+. |...| .++.+++..++++|++||++|+++|||||+|||||||++++
T Consensus 223 -------~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~-~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~e 294 (355)
T COG0144 223 -------LLPGGEKFDRILLDAPCSGTGVIRRDPDVKW-RRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPE 294 (355)
T ss_pred -------cccccCcCcEEEECCCCCCCcccccCccccc-cCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchh
Confidence 01122369999999999999985 78888 88999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhCCCceeecCCC
Q 009628 489 ENEALVRYALDRYKFLSLAPQHP 511 (530)
Q Consensus 489 ENE~vV~~~L~~~~~~~l~~~~p 511 (530)
|||+||.++|++++++++++...
T Consensus 295 ENE~vV~~~L~~~~~~~~~~~~~ 317 (355)
T COG0144 295 ENEEVVERFLERHPDFELEPVRL 317 (355)
T ss_pred cCHHHHHHHHHhCCCceeecccc
Confidence 99999999999999999887643
No 3
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=100.00 E-value=1.4e-49 Score=428.55 Aligned_cols=176 Identities=34% Similarity=0.551 Sum_probs=159.7
Q ss_pred ccceEEEeccchHHHHHhc--CCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEE
Q 009628 239 LEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITT 316 (530)
Q Consensus 239 ~~G~i~lQd~~S~v~~~~L--dpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~ 316 (530)
..|.+++||.+||+++++| +|+||++||||||||||||+|||++|+++|.|+|+|++++|+..++++++++|+++|.+
T Consensus 89 ~~G~~yvQd~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v 168 (470)
T PRK11933 89 LSGLFYIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVAL 168 (470)
T ss_pred HCCcEEEECHHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEE
Confidence 4799999999999999999 99999999999999999999999999999999999999999999999999999999988
Q ss_pred EEcchhHHHhhcCCCCCCCCccCCCCCccccccccccccccccccchhccCCCCCCcccccccccccccccccchhhhhh
Q 009628 317 YKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKVSNEKGVERTYVSKADTRK 396 (530)
Q Consensus 317 ~~~Da~k~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 396 (530)
...|+.+..
T Consensus 169 ~~~D~~~~~----------------------------------------------------------------------- 177 (470)
T PRK11933 169 THFDGRVFG----------------------------------------------------------------------- 177 (470)
T ss_pred EeCchhhhh-----------------------------------------------------------------------
Confidence 888865420
Q ss_pred hhhhccCCCCCCccCCCcccCCCCCCCCCCCeEEEcCCCCCCCCc---ccchhhhhhHHHHHHHHHHHHHHHHHHHhcCC
Q 009628 397 NMRRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGLR---PRLFAAEETIQSLRNHGKYQRRMFDQAVQLVR 473 (530)
Q Consensus 397 ~~~~~~~~~~~~~~~~g~~~~~~~f~~~sFDrVLlDaPCSglG~r---p~l~~~~~t~~~l~~~~~~Qr~ll~~A~~lLk 473 (530)
...+..||+||+||||||+|+. |...+ .|+.+++..++.+|++||++|+++||
T Consensus 178 -----------------------~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~-~~s~~~v~~l~~lQ~~iL~~A~~~Lk 233 (470)
T PRK11933 178 -----------------------AALPETFDAILLDAPCSGEGTVRKDPDALK-NWSPESNLEIAATQRELIESAFHALK 233 (470)
T ss_pred -----------------------hhchhhcCeEEEcCCCCCCcccccCHHHhh-hCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 1124579999999999999984 44455 78999999999999999999999999
Q ss_pred CCCEEEEEecCCCCCCCHHHHHHHHHhCCC-ceeecC
Q 009628 474 PGGIIVYSTCTINPGENEALVRYALDRYKF-LSLAPQ 509 (530)
Q Consensus 474 pGG~LVYSTCSi~~~ENE~vV~~~L~~~~~-~~l~~~ 509 (530)
|||+|||||||++++|||+||+++|++|++ +++.|.
T Consensus 234 pGG~LVYSTCT~~~eENE~vV~~~L~~~~~~~~~~~~ 270 (470)
T PRK11933 234 PGGTLVYSTCTLNREENQAVCLWLKETYPDAVEFEPL 270 (470)
T ss_pred CCcEEEEECCCCCHHHHHHHHHHHHHHCCCcEEeccc
Confidence 999999999999999999999999999997 556654
No 4
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=100.00 E-value=5.6e-48 Score=393.01 Aligned_cols=186 Identities=39% Similarity=0.633 Sum_probs=165.9
Q ss_pred cccceEEEeccchHHHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEE
Q 009628 238 VLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTY 317 (530)
Q Consensus 238 ~~~G~i~lQd~~S~v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~ 317 (530)
+++|.|++||++|++++++|+|++|++||||||||||||+|||++|.++|+|+|+|++.+|+..++++++++|+.++.+.
T Consensus 62 ~~~G~~~vQd~sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~ 141 (283)
T PF01189_consen 62 FKNGLFYVQDESSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVI 141 (283)
T ss_dssp HHTTSEEEHHHHHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEE
T ss_pred hhCCcEEecccccccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEE
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcchhHHHhhcCCCCCCCCccCCCCCccccccccccccccccccchhccCCCCCCcccccccccccccccccchhhhhhh
Q 009628 318 KLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKVSNEKGVERTYVSKADTRKN 397 (530)
Q Consensus 318 ~~Da~k~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 397 (530)
..|+.+...
T Consensus 142 ~~D~~~~~~----------------------------------------------------------------------- 150 (283)
T PF01189_consen 142 NADARKLDP----------------------------------------------------------------------- 150 (283)
T ss_dssp ESHHHHHHH-----------------------------------------------------------------------
T ss_pred eeccccccc-----------------------------------------------------------------------
Confidence 988876411
Q ss_pred hhhccCCCCCCccCCCcccCCCCCCCCCCCeEEEcCCCCCCCC---cccchhhhhhHHHHHHHHHHHHHHHHHHHhcC--
Q 009628 398 MRRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLV-- 472 (530)
Q Consensus 398 ~~~~~~~~~~~~~~~g~~~~~~~f~~~sFDrVLlDaPCSglG~---rp~l~~~~~t~~~l~~~~~~Qr~ll~~A~~lL-- 472 (530)
......||+||+||||||+|+ .|...| .++.+++..++.+|++||++|+++|
T Consensus 151 ----------------------~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~-~~~~~~~~~l~~~Q~~iL~~a~~~~~~ 207 (283)
T PF01189_consen 151 ----------------------KKPESKFDRVLVDAPCSGLGTIRRNPDIKW-RRSPEDIEKLAELQREILDNAAKLLNI 207 (283)
T ss_dssp ----------------------HHHTTTEEEEEEECSCCCGGGTTTCTTHHH-HE-TTHHHHHHHHHHHHHHHHHHCEHH
T ss_pred ----------------------cccccccchhhcCCCccchhhhhhccchhh-cccccccchHHHHHHHHHHHHHHhhcc
Confidence 011236999999999999997 366666 6678999999999999999999999
Q ss_pred --CCCCEEEEEecCCCCCCCHHHHHHHHHhCCCceeecCCCCCCCCC
Q 009628 473 --RPGGIIVYSTCTINPGENEALVRYALDRYKFLSLAPQHPRIGGPG 517 (530)
Q Consensus 473 --kpGG~LVYSTCSi~~~ENE~vV~~~L~~~~~~~l~~~~p~~g~pg 517 (530)
||||+|||||||++++|||+||++||+++|++++++.....+.+|
T Consensus 208 ~~k~gG~lvYsTCS~~~eENE~vV~~fl~~~~~~~l~~~~~~~~~~~ 254 (283)
T PF01189_consen 208 DFKPGGRLVYSTCSLSPEENEEVVEKFLKRHPDFELVPIPLPEPPPG 254 (283)
T ss_dssp HBEEEEEEEEEESHHHGGGTHHHHHHHHHHSTSEEEECCESSTCEEE
T ss_pred cccCCCeEEEEeccHHHHHHHHHHHHHHHhCCCcEEEeccccccccc
Confidence 999999999999999999999999999999999998766555443
No 5
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=4.9e-44 Score=383.40 Aligned_cols=258 Identities=29% Similarity=0.443 Sum_probs=215.9
Q ss_pred ccCHHHHHHHHHhhchhhHHHHHHHhcCCCCccEEEeecCCCCHHHHHHHHHHHHHhcCCCccccccccccccCCCcccc
Q 009628 14 RWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISE 93 (530)
Q Consensus 14 ~~~~~v~~~l~~~~~~~~~~~~~~~l~~pp~~~~iRVNTl~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (530)
++.+-+.+++.+.||.+..++|++++..||. +++||||+|++++++++.|.+. | +.+
T Consensus 133 s~P~wl~~~~~~~~g~~~~~~~~~~~~~~~~-~~~RvN~~k~~~~~~~~~l~~~---------g-------------~~~ 189 (431)
T PRK14903 133 SHPKWLVNYWRSFLPEEAVLRIMEWNQEPLP-TMLRVNSLAITREEVIKILAEE---------G-------------TEA 189 (431)
T ss_pred cCcHHHHHHHHHHcCHHHHHHHHHHhcCCCC-eeEEeeCCcCCHHHHHHHHHHC---------C-------------Cee
Confidence 4566789999999999999999999999987 4899999999999999888644 3 223
Q ss_pred ccCCCCCceEEEeCCCCccccCCCCCCCCCCeEEEcchhHHHHHhccccccCceeeccCCccCCCEEEEEEcccCCcCCC
Q 009628 94 SQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDG 173 (530)
Q Consensus 94 ~~~~~l~~~l~i~~~gp~~~~~~~~~~~~~k~ViVd~~~~eAVLrGA~v~aPGil~~~~~i~~Gd~VaV~~~~~~~~~~~ 173 (530)
.+.|.+|+.++++.... .
T Consensus 190 ~~~~~~~~~~~~~~~~~-~------------------------------------------------------------- 207 (431)
T PRK14903 190 VPGKHSPFSLIVRKLGV-N------------------------------------------------------------- 207 (431)
T ss_pred EECCCCCceEEEcCCCC-C-------------------------------------------------------------
Confidence 33444444444321100 0
Q ss_pred CCcccccccccccCCCCCCCcccCCceEEeecccccCcccccccCCceeeecCCccccCCCccccccceEEEeccchHHH
Q 009628 174 GWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVT 253 (530)
Q Consensus 174 ~w~~~~~rg~~~~~~~~~~~~~~~~gv~Vg~Gia~mSreelf~~p~GlaV~~~~~v~~lP~~~~~~~G~i~lQd~~S~v~ 253 (530)
+..++ .+.+|.+++||.+|+++
T Consensus 208 -------------------------------------------------------~~~~~---~~~~G~~~~Qd~~s~~~ 229 (431)
T PRK14903 208 -------------------------------------------------------MNDSR---VIKDGLATVQGESSQIV 229 (431)
T ss_pred -------------------------------------------------------cccCh---HHHCCeEEEECHHHHHH
Confidence 00111 23589999999999999
Q ss_pred HHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhHHHhhcCCCCC
Q 009628 254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESND 333 (530)
Q Consensus 254 ~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k~v~~~~~~~~ 333 (530)
+.+|++++|++||||||||||||+|+|.+|+++|+|+|+|++++|+..++++++++|+++|++...|+.+..
T Consensus 230 ~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~-------- 301 (431)
T PRK14903 230 PLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLT-------- 301 (431)
T ss_pred HHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhh--------
Confidence 999999999999999999999999999999989999999999999999999999999998999998875420
Q ss_pred CCCccCCCCCccccccccccccccccccchhccCCCCCCcccccccccccccccccchhhhhhhhhhccCCCCCCccCCC
Q 009628 334 EPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKVSNEKGVERTYVSKADTRKNMRRMRNGPGRNQCLGG 413 (530)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~g 413 (530)
T Consensus 302 -------------------------------------------------------------------------------- 301 (431)
T PRK14903 302 -------------------------------------------------------------------------------- 301 (431)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCCCCCCeEEEcCCCCCCCCc---ccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCCC
Q 009628 414 RAENSKGFSPNSFDRVLLDAPCSALGLR---PRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGEN 490 (530)
Q Consensus 414 ~~~~~~~f~~~sFDrVLlDaPCSglG~r---p~l~~~~~t~~~l~~~~~~Qr~ll~~A~~lLkpGG~LVYSTCSi~~~EN 490 (530)
.+..++||+||+|||||++|+. |...+ .++.+++..++..|+++|.+|.++|||||+|||||||++++||
T Consensus 302 ------~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~-~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEn 374 (431)
T PRK14903 302 ------EYVQDTFDRILVDAPCTSLGTARNHPEVLR-RVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEEN 374 (431)
T ss_pred ------hhhhccCCEEEECCCCCCCccccCChHHHH-hCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhC
Confidence 1223579999999999999983 55556 6788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCceeecC
Q 009628 491 EALVRYALDRYKFLSLAPQ 509 (530)
Q Consensus 491 E~vV~~~L~~~~~~~l~~~ 509 (530)
|++|.+||++||++++++.
T Consensus 375 e~vv~~fl~~~~~~~~~~~ 393 (431)
T PRK14903 375 TEVVKRFVYEQKDAEVIDI 393 (431)
T ss_pred HHHHHHHHHhCCCcEEecc
Confidence 9999999999999988764
No 6
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=1.3e-43 Score=380.52 Aligned_cols=260 Identities=36% Similarity=0.555 Sum_probs=215.3
Q ss_pred ccCHHHHHHHHHhhchhhHHHHHHHhcCCCCccEEEeecCCCCHHHHHHHHHHHHHhcCCCccccccccccccCCCcccc
Q 009628 14 RWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISE 93 (530)
Q Consensus 14 ~~~~~v~~~l~~~~~~~~~~~~~~~l~~pp~~~~iRVNTl~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (530)
++.+-+.+++.+.||.+..++|++++.+||. +++||||+|++++++++.|.+. | +..
T Consensus 148 s~P~wl~~~~~~~~g~~~~~~~~~~~~~~~~-~~~Rvn~~k~~~~~~~~~l~~~---------g-------------~~~ 204 (434)
T PRK14901 148 SFPDWLVKLWLEWLGLEEAEQLCKWFNQPPS-LDLRINPLRTSLEEVQAALAEA---------G-------------ITA 204 (434)
T ss_pred CCcHHHHHHHHHHhCHHHHHHHHHHhCCCCC-eEEEECCCCCCHHHHHHHHHHC---------C-------------Cce
Confidence 4677789999999999989999999999887 7889999999999999887644 3 222
Q ss_pred ccCCCCCceEEEeCCCCccccCCCCCCCCCCeEEEcchhHHHHHhccccccCceeeccCCccCCCEEEEEEcccCCcCCC
Q 009628 94 SQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDG 173 (530)
Q Consensus 94 ~~~~~l~~~l~i~~~gp~~~~~~~~~~~~~k~ViVd~~~~eAVLrGA~v~aPGil~~~~~i~~Gd~VaV~~~~~~~~~~~ 173 (530)
.+.|.+|+.+.++...
T Consensus 205 ~~~~~~~~~~~~~~~~---------------------------------------------------------------- 220 (434)
T PRK14901 205 TPIPGLPQGLRLTGNP---------------------------------------------------------------- 220 (434)
T ss_pred EECCCCCCeEEecCCC----------------------------------------------------------------
Confidence 2333334333332100
Q ss_pred CCcccccccccccCCCCCCCcccCCceEEeecccccCcccccccCCceeeecCCccccCCCccccccceEEEeccchHHH
Q 009628 174 GWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVT 253 (530)
Q Consensus 174 ~w~~~~~rg~~~~~~~~~~~~~~~~gv~Vg~Gia~mSreelf~~p~GlaV~~~~~v~~lP~~~~~~~G~i~lQd~~S~v~ 253 (530)
..+..+|. +.+|.+++||..|+++
T Consensus 221 -----------------------------------------------------~~~~~~~~---f~~g~~~~qd~~s~l~ 244 (434)
T PRK14901 221 -----------------------------------------------------GSIRQLPG---YEEGWWTVQDRSAQLV 244 (434)
T ss_pred -----------------------------------------------------CccccChH---HhCCeEEEECHHHHHH
Confidence 00112232 3589999999999999
Q ss_pred HHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhHHHhhcCCCCC
Q 009628 254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESND 333 (530)
Q Consensus 254 ~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k~v~~~~~~~~ 333 (530)
+++|++++|++|||||||||+||++||.+|+++|+|+|+|++++|+..++++++++|+++|+++..|+.....
T Consensus 245 ~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~------- 317 (434)
T PRK14901 245 APLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLE------- 317 (434)
T ss_pred HHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccc-------
Confidence 9999999999999999999999999999999899999999999999999999999999999999998754200
Q ss_pred CCCccCCCCCccccccccccccccccccchhccCCCCCCcccccccccccccccccchhhhhhhhhhccCCCCCCccCCC
Q 009628 334 EPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKVSNEKGVERTYVSKADTRKNMRRMRNGPGRNQCLGG 413 (530)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~g 413 (530)
T Consensus 318 -------------------------------------------------------------------------------- 317 (434)
T PRK14901 318 -------------------------------------------------------------------------------- 317 (434)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCCCCCCeEEEcCCCCCCCCc---ccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCCC
Q 009628 414 RAENSKGFSPNSFDRVLLDAPCSALGLR---PRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGEN 490 (530)
Q Consensus 414 ~~~~~~~f~~~sFDrVLlDaPCSglG~r---p~l~~~~~t~~~l~~~~~~Qr~ll~~A~~lLkpGG~LVYSTCSi~~~EN 490 (530)
...+..++||+||+||||||+|+. |...| .++.+++..++.+|+++|++|.++|||||+|||||||++++||
T Consensus 318 ----~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~-~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~En 392 (434)
T PRK14901 318 ----LKPQWRGYFDRILLDAPCSGLGTLHRHPDARW-RQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAEN 392 (434)
T ss_pred ----ccccccccCCEEEEeCCCCcccccccCcchhh-hCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhH
Confidence 001234689999999999999983 55556 6688999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCceeec
Q 009628 491 EALVRYALDRYKFLSLAP 508 (530)
Q Consensus 491 E~vV~~~L~~~~~~~l~~ 508 (530)
|++|.++|++||++++.+
T Consensus 393 e~~v~~~l~~~~~~~~~~ 410 (434)
T PRK14901 393 EAQIEQFLARHPDWKLEP 410 (434)
T ss_pred HHHHHHHHHhCCCcEecC
Confidence 999999999999998775
No 7
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=100.00 E-value=8.3e-42 Score=344.27 Aligned_cols=174 Identities=34% Similarity=0.572 Sum_probs=158.0
Q ss_pred ccceEEEeccchHHHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEE
Q 009628 239 LEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYK 318 (530)
Q Consensus 239 ~~G~i~lQd~~S~v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~ 318 (530)
.+|.+++||.+|++++.+|+|++|++|||||||||+||++||++|+++|.|+|+|+++.++..++++++++|+.+|+++.
T Consensus 49 ~~G~~~~qd~~s~~~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~ 128 (264)
T TIGR00446 49 LSGLYYIQEASSMIPPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTN 128 (264)
T ss_pred hCCeEEEECHHHHHHHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEec
Confidence 58999999999999999999999999999999999999999999998999999999999999999999999998899988
Q ss_pred cchhHHHhhcCCCCCCCCccCCCCCccccccccccccccccccchhccCCCCCCcccccccccccccccccchhhhhhhh
Q 009628 319 LDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKVSNEKGVERTYVSKADTRKNM 398 (530)
Q Consensus 319 ~Da~k~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 398 (530)
.|+....
T Consensus 129 ~D~~~~~------------------------------------------------------------------------- 135 (264)
T TIGR00446 129 FDGRVFG------------------------------------------------------------------------- 135 (264)
T ss_pred CCHHHhh-------------------------------------------------------------------------
Confidence 8865410
Q ss_pred hhccCCCCCCccCCCcccCCCCCCCCCCCeEEEcCCCCCCCCc---ccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCC
Q 009628 399 RRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGLR---PRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPG 475 (530)
Q Consensus 399 ~~~~~~~~~~~~~~g~~~~~~~f~~~sFDrVLlDaPCSglG~r---p~l~~~~~t~~~l~~~~~~Qr~ll~~A~~lLkpG 475 (530)
....+||+||+||||||+|+. |...| .++.+++..++..|+++|++|+++||||
T Consensus 136 ----------------------~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~-~~~~~~~~~l~~~q~~iL~~a~~~lkpg 192 (264)
T TIGR00446 136 ----------------------AAVPKFDAILLDAPCSGEGVIRKDPSRKK-NWSEEDIQEISALQKELIDSAFDALKPG 192 (264)
T ss_pred ----------------------hhccCCCEEEEcCCCCCCcccccChhhhh-cCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 012359999999999999985 44444 5788999999999999999999999999
Q ss_pred CEEEEEecCCCCCCCHHHHHHHHHhCCCceeec
Q 009628 476 GIIVYSTCTINPGENEALVRYALDRYKFLSLAP 508 (530)
Q Consensus 476 G~LVYSTCSi~~~ENE~vV~~~L~~~~~~~l~~ 508 (530)
|+|||||||++++|||+||+++|++|+++.+.+
T Consensus 193 G~lvYstcs~~~~Ene~vv~~~l~~~~~~~~~~ 225 (264)
T TIGR00446 193 GVLVYSTCSLEPEENEAVVDYLLEKRPDVVEEL 225 (264)
T ss_pred CEEEEEeCCCChHHHHHHHHHHHHhCCCcEEec
Confidence 999999999999999999999999999887664
No 8
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=100.00 E-value=3.5e-41 Score=360.90 Aligned_cols=175 Identities=33% Similarity=0.498 Sum_probs=153.4
Q ss_pred cccceEEEeccchHHHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEE-
Q 009628 238 VLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITT- 316 (530)
Q Consensus 238 ~~~G~i~lQd~~S~v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~- 316 (530)
+.+|++++||.+|++++.+|+|++|++|||||||||+||+++|.+|+ +|+|+|+|++++++..++++++++|++ +.+
T Consensus 215 ~~~G~~~~Qd~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~-~~v~ 292 (426)
T TIGR00563 215 FEEGWVTVQDASAQWVATWLAPQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLT-IKAE 292 (426)
T ss_pred hhCCeEEEECHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCC-eEEE
Confidence 35899999999999999999999999999999999999999999997 799999999999999999999999987 444
Q ss_pred -EEcchhHHHhhcCCCCCCCCccCCCCCccccccccccccccccccchhccCCCCCCcccccccccccccccccchhhhh
Q 009628 317 -YKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKVSNEKGVERTYVSKADTR 395 (530)
Q Consensus 317 -~~~Da~k~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 395 (530)
...|+...
T Consensus 293 ~~~~d~~~~----------------------------------------------------------------------- 301 (426)
T TIGR00563 293 TKDGDGRGP----------------------------------------------------------------------- 301 (426)
T ss_pred Eeccccccc-----------------------------------------------------------------------
Confidence 33332110
Q ss_pred hhhhhccCCCCCCccCCCcccCCCCCCCCCCCeEEEcCCCCCCCC---cccchhhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 009628 396 KNMRRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLV 472 (530)
Q Consensus 396 ~~~~~~~~~~~~~~~~~g~~~~~~~f~~~sFDrVLlDaPCSglG~---rp~l~~~~~t~~~l~~~~~~Qr~ll~~A~~lL 472 (530)
...+...+||+||+||||||+|+ .|.+.| .++.+++.+++..|+++|++|.++|
T Consensus 302 ----------------------~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~-~~~~~~~~~l~~lQ~~lL~~a~~~L 358 (426)
T TIGR00563 302 ----------------------SQWAENEQFDRILLDAPCSATGVIRRHPDIKW-LRKPRDIAELAELQSEILDAIWPLL 358 (426)
T ss_pred ----------------------cccccccccCEEEEcCCCCCCcccccCcchhh-cCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 00113467999999999999997 377767 6789999999999999999999999
Q ss_pred CCCCEEEEEecCCCCCCCHHHHHHHHHhCCCceeec
Q 009628 473 RPGGIIVYSTCTINPGENEALVRYALDRYKFLSLAP 508 (530)
Q Consensus 473 kpGG~LVYSTCSi~~~ENE~vV~~~L~~~~~~~l~~ 508 (530)
||||+|||||||++++|||++|.++|++||++.+..
T Consensus 359 kpgG~lvystcs~~~~Ene~~v~~~l~~~~~~~~~~ 394 (426)
T TIGR00563 359 KTGGTLVYATCSVLPEENSEQIKAFLQEHPDFPFEK 394 (426)
T ss_pred CCCcEEEEEeCCCChhhCHHHHHHHHHhCCCCeecc
Confidence 999999999999999999999999999999987654
No 9
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=2.5e-38 Score=339.03 Aligned_cols=175 Identities=35% Similarity=0.553 Sum_probs=155.4
Q ss_pred ccceEEEeccchHHHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEE
Q 009628 239 LEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYK 318 (530)
Q Consensus 239 ~~G~i~lQd~~S~v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~ 318 (530)
++|.+++||.+|++++.+|++++|++|||+|||||+||+++++++.+ ++|+|+|+++.++..++++++++|++ ++++.
T Consensus 222 ~~G~~~iQd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~~g~~-~~~~~ 299 (427)
T PRK10901 222 AEGWVSVQDAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQRLGLK-ATVIV 299 (427)
T ss_pred hCceEEEECHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEE
Confidence 57999999999999999999999999999999999999999998854 89999999999999999999999986 57777
Q ss_pred cchhHHHhhcCCCCCCCCccCCCCCccccccccccccccccccchhccCCCCCCcccccccccccccccccchhhhhhhh
Q 009628 319 LDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKVSNEKGVERTYVSKADTRKNM 398 (530)
Q Consensus 319 ~Da~k~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 398 (530)
.|+.+..
T Consensus 300 ~D~~~~~------------------------------------------------------------------------- 306 (427)
T PRK10901 300 GDARDPA------------------------------------------------------------------------- 306 (427)
T ss_pred cCcccch-------------------------------------------------------------------------
Confidence 7764310
Q ss_pred hhccCCCCCCccCCCcccCCCCCCCCCCCeEEEcCCCCCCCCc---ccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCC
Q 009628 399 RRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGLR---PRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPG 475 (530)
Q Consensus 399 ~~~~~~~~~~~~~~g~~~~~~~f~~~sFDrVLlDaPCSglG~r---p~l~~~~~t~~~l~~~~~~Qr~ll~~A~~lLkpG 475 (530)
..+..++||+|++|||||+.|+. |.+.| ..+.+++.++...|+++|++|.++||||
T Consensus 307 --------------------~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~-~~~~~~l~~l~~~q~~iL~~a~~~LkpG 365 (427)
T PRK10901 307 --------------------QWWDGQPFDRILLDAPCSATGVIRRHPDIKW-LRRPEDIAALAALQSEILDALWPLLKPG 365 (427)
T ss_pred --------------------hhcccCCCCEEEECCCCCcccccccCccccc-cCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 01234679999999999999973 55555 5678899999999999999999999999
Q ss_pred CEEEEEecCCCCCCCHHHHHHHHHhCCCceeecC
Q 009628 476 GIIVYSTCTINPGENEALVRYALDRYKFLSLAPQ 509 (530)
Q Consensus 476 G~LVYSTCSi~~~ENE~vV~~~L~~~~~~~l~~~ 509 (530)
|+|||||||++++|||++|.++|++++++++++.
T Consensus 366 G~lvystcs~~~~Ene~~v~~~l~~~~~~~~~~~ 399 (427)
T PRK10901 366 GTLLYATCSILPEENEQQIKAFLARHPDAELLDT 399 (427)
T ss_pred CEEEEEeCCCChhhCHHHHHHHHHhCCCCEEecC
Confidence 9999999999999999999999999999998874
No 10
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=4e-38 Score=339.06 Aligned_cols=173 Identities=37% Similarity=0.594 Sum_probs=157.9
Q ss_pred ccceEEEeccchHHHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEE
Q 009628 239 LEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYK 318 (530)
Q Consensus 239 ~~G~i~lQd~~S~v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~ 318 (530)
..|.+++||..|++++++|++++|++|||+|||||+||+++|.++++.|.|+|+|+|+.++..++++++++|+++|+++.
T Consensus 228 ~~G~~~vqd~~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~ 307 (445)
T PRK14904 228 KLGLVSVQNPTQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIE 307 (445)
T ss_pred hCcEEEEeCHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 47999999999999999999999999999999999999999999988899999999999999999999999998898888
Q ss_pred cchhHHHhhcCCCCCCCCccCCCCCccccccccccccccccccchhccCCCCCCcccccccccccccccccchhhhhhhh
Q 009628 319 LDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKVSNEKGVERTYVSKADTRKNM 398 (530)
Q Consensus 319 ~Da~k~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 398 (530)
.|+...
T Consensus 308 ~Da~~~-------------------------------------------------------------------------- 313 (445)
T PRK14904 308 GDARSF-------------------------------------------------------------------------- 313 (445)
T ss_pred Cccccc--------------------------------------------------------------------------
Confidence 886431
Q ss_pred hhccCCCCCCccCCCcccCCCCCCCCCCCeEEEcCCCCCCCC---cccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCC
Q 009628 399 RRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGL---RPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPG 475 (530)
Q Consensus 399 ~~~~~~~~~~~~~~g~~~~~~~f~~~sFDrVLlDaPCSglG~---rp~l~~~~~t~~~l~~~~~~Qr~ll~~A~~lLkpG 475 (530)
...++||+|++||||||+|+ .|...| .++.+++..++..|+++|.+|.++||||
T Consensus 314 ----------------------~~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~-~~~~~~~~~l~~~q~~iL~~a~~~lkpg 370 (445)
T PRK14904 314 ----------------------SPEEQPDAILLDAPCTGTGVLGRRAELRW-KLTPEKLAELVGLQAELLDHAASLLKPG 370 (445)
T ss_pred ----------------------ccCCCCCEEEEcCCCCCcchhhcCcchhh-cCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 02357999999999999997 366666 6788999999999999999999999999
Q ss_pred CEEEEEecCCCCCCCHHHHHHHHHhCCCceeec
Q 009628 476 GIIVYSTCTINPGENEALVRYALDRYKFLSLAP 508 (530)
Q Consensus 476 G~LVYSTCSi~~~ENE~vV~~~L~~~~~~~l~~ 508 (530)
|+|||||||++++|||++|+++|++|+++++.+
T Consensus 371 G~lvystcs~~~~Ene~~v~~~l~~~~~~~~~~ 403 (445)
T PRK14904 371 GVLVYATCSIEPEENELQIEAFLQRHPEFSAEP 403 (445)
T ss_pred cEEEEEeCCCChhhHHHHHHHHHHhCCCCEEec
Confidence 999999999999999999999999999887755
No 11
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=1.4e-37 Score=334.76 Aligned_cols=177 Identities=41% Similarity=0.664 Sum_probs=159.3
Q ss_pred ccceEEEeccchHHHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEE
Q 009628 239 LEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYK 318 (530)
Q Consensus 239 ~~G~i~lQd~~S~v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~ 318 (530)
.+|.+++||..|++++.++++++|++|||||||||+||+++|.++++.|.|+|+|+++.++..++++++++|+++|+++.
T Consensus 228 ~~G~~~~qd~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~ 307 (444)
T PRK14902 228 KDGLITIQDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKA 307 (444)
T ss_pred hCceEEEEChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEe
Confidence 48999999999999999999999999999999999999999999977899999999999999999999999998899998
Q ss_pred cchhHHHhhcCCCCCCCCccCCCCCccccccccccccccccccchhccCCCCCCcccccccccccccccccchhhhhhhh
Q 009628 319 LDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKVSNEKGVERTYVSKADTRKNM 398 (530)
Q Consensus 319 ~Da~k~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 398 (530)
.|+.+..
T Consensus 308 ~D~~~~~------------------------------------------------------------------------- 314 (444)
T PRK14902 308 LDARKVH------------------------------------------------------------------------- 314 (444)
T ss_pred CCccccc-------------------------------------------------------------------------
Confidence 8865410
Q ss_pred hhccCCCCCCccCCCcccCCCCCCCCCCCeEEEcCCCCCCCCc---ccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCC
Q 009628 399 RRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGLR---PRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPG 475 (530)
Q Consensus 399 ~~~~~~~~~~~~~~g~~~~~~~f~~~sFDrVLlDaPCSglG~r---p~l~~~~~t~~~l~~~~~~Qr~ll~~A~~lLkpG 475 (530)
..+ +++||+|++||||||+|+. |...+ .++..++.+++..|+++|.+|.++||||
T Consensus 315 --------------------~~~-~~~fD~Vl~D~Pcsg~G~~~~~p~~~~-~~~~~~~~~l~~~q~~iL~~a~~~LkpG 372 (444)
T PRK14902 315 --------------------EKF-AEKFDKILVDAPCSGLGVIRRKPDIKY-NKTKEDIESLQEIQLEILESVAQYLKKG 372 (444)
T ss_pred --------------------chh-cccCCEEEEcCCCCCCeeeccCcchhh-cCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 012 2679999999999999974 55555 5677899999999999999999999999
Q ss_pred CEEEEEecCCCCCCCHHHHHHHHHhCCCceeecCC
Q 009628 476 GIIVYSTCTINPGENEALVRYALDRYKFLSLAPQH 510 (530)
Q Consensus 476 G~LVYSTCSi~~~ENE~vV~~~L~~~~~~~l~~~~ 510 (530)
|+|||||||++++|||++|.++|++++.+++++..
T Consensus 373 G~lvystcs~~~~Ene~vv~~~l~~~~~~~~~~~~ 407 (444)
T PRK14902 373 GILVYSTCTIEKEENEEVIEAFLEEHPEFELVPLQ 407 (444)
T ss_pred CEEEEEcCCCChhhhHHHHHHHHHhCCCcEEeccc
Confidence 99999999999999999999999999999988754
No 12
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-36 Score=312.73 Aligned_cols=199 Identities=31% Similarity=0.429 Sum_probs=158.9
Q ss_pred ccceEEEeccchHHHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCC---CcEEEEEeCCHHHHHHHHHHHHHhCCCceE
Q 009628 239 LEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRD---EGEVVAVDRSHNKVMDIQKLAAEMGLKCIT 315 (530)
Q Consensus 239 ~~G~i~lQd~~S~v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~---~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~ 315 (530)
.-|.+++||.+||+++.+|+++||++||||||||||||.+|.+.+.. .|.|+|.|.+.+|+..+++..+++.-.++.
T Consensus 133 ~vg~i~rqeavSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~ 212 (375)
T KOG2198|consen 133 GVGNIYRQEAVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLL 212 (375)
T ss_pred ccccchhhhhhhccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCccee
Confidence 46899999999999999999999999999999999999998877653 479999999999999999988888877777
Q ss_pred EEEcchhHHHhhcCCCCCCCCccCCCCCccccccccccccccccccchhccCCCCCCcccccccccccccccccchhhhh
Q 009628 316 TYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKVSNEKGVERTYVSKADTR 395 (530)
Q Consensus 316 ~~~~Da~k~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 395 (530)
+.+.|+...- +.++.
T Consensus 213 v~~~~~~~~p------------------------------------------------------------~~~~~----- 227 (375)
T KOG2198|consen 213 VTNHDASLFP------------------------------------------------------------NIYLK----- 227 (375)
T ss_pred eecccceecc------------------------------------------------------------ccccc-----
Confidence 7777764310 00000
Q ss_pred hhhhhccCCCCCCccCCCcccCCCCCCCCCCCeEEEcCCCCCCCCc---ccchhhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 009628 396 KNMRRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGLR---PRLFAAEETIQSLRNHGKYQRRMFDQAVQLV 472 (530)
Q Consensus 396 ~~~~~~~~~~~~~~~~~g~~~~~~~f~~~sFDrVLlDaPCSglG~r---p~l~~~~~t~~~l~~~~~~Qr~ll~~A~~lL 472 (530)
+ ........|||||+|+|||++|+. |.+|...|+.+.-.+++.+|.+||.+++++|
T Consensus 228 -------~--------------~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lL 286 (375)
T KOG2198|consen 228 -------D--------------GNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLL 286 (375)
T ss_pred -------c--------------CchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHh
Confidence 0 001234689999999999999984 5566532677777789999999999999999
Q ss_pred CCCCEEEEEecCCCCCCCHHHHHHHHHhCCC-ceeecCCCC----CCCCCccceEE
Q 009628 473 RPGGIIVYSTCTINPGENEALVRYALDRYKF-LSLAPQHPR----IGGPGLVGRYE 523 (530)
Q Consensus 473 kpGG~LVYSTCSi~~~ENE~vV~~~L~~~~~-~~l~~~~p~----~g~pg~~g~~~ 523 (530)
|+||+|||||||++|-|||+||..+|++..+ ++++..... +--+|..+++.
T Consensus 287 k~GG~lVYSTCSLnpieNEaVV~~~L~~~~~~~~lv~~~~~lp~l~r~~g~t~~~~ 342 (375)
T KOG2198|consen 287 KVGGRLVYSTCSLNPIENEAVVQEALQKVGGAVELVDVSGDLPGLKRMFGSTGWKV 342 (375)
T ss_pred cCCCEEEEeccCCCchhhHHHHHHHHHHhcCcccceeeccccccceecCCCCcceE
Confidence 9999999999999999999999999998775 677755322 23455554443
No 13
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=8.1e-27 Score=240.55 Aligned_cols=188 Identities=29% Similarity=0.481 Sum_probs=158.6
Q ss_pred cccceEEEeccchHHHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEE
Q 009628 238 VLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTY 317 (530)
Q Consensus 238 ~~~G~i~lQd~~S~v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~ 317 (530)
+..|.+.+||.+|+++++.|+|.+|.+|+|+|||||.||+|+|..|+++|.|.|+|+++.|+..++++.+..|.+++...
T Consensus 190 y~~g~~ilqd~asclpA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~ 269 (413)
T KOG2360|consen 190 YKNGKFILQDKASCLPAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESV 269 (413)
T ss_pred cccCceEEechhhcchhhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred EcchhHHHhhcCCCCCCCCccCCCCCccccccccccccccccccchhccCCCCCCcccccccccccccccccchhhhhhh
Q 009628 318 KLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKVSNEKGVERTYVSKADTRKN 397 (530)
Q Consensus 318 ~~Da~k~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 397 (530)
..|++..+
T Consensus 270 ~~df~~t~------------------------------------------------------------------------ 277 (413)
T KOG2360|consen 270 EGDFLNTA------------------------------------------------------------------------ 277 (413)
T ss_pred cccccCCC------------------------------------------------------------------------
Confidence 77765410
Q ss_pred hhhccCCCCCCccCCCcccCCCCCCCCCCCeEEEcCCCCCCCCc--ccch--hhhhhHHHHHHHHHHHHHHHHHHHhcCC
Q 009628 398 MRRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGLR--PRLF--AAEETIQSLRNHGKYQRRMFDQAVQLVR 473 (530)
Q Consensus 398 ~~~~~~~~~~~~~~~g~~~~~~~f~~~sFDrVLlDaPCSglG~r--p~l~--~~~~t~~~l~~~~~~Qr~ll~~A~~lLk 473 (530)
. ++.-.....||+||+|||.|+. .+.. +.....+.|.++..+|-+++.+|..+-+
T Consensus 278 -------------------~--~~~~~~v~~iL~DpscSgSgm~~r~~~~~~~e~~~~~rL~~L~~fq~~~~~hal~fp~ 336 (413)
T KOG2360|consen 278 -------------------T--PEKFRDVTYILVDPSCSGSGMVSRQDEDPGAETESPERLENLQSFQIRILKHALTFPN 336 (413)
T ss_pred -------------------C--cccccceeEEEeCCCCCCCccccceeeccCCCcccHHHHHHHHHHHHHHHHHHhcCCc
Confidence 0 1112457789999999999983 3322 2356678999999999999999998665
Q ss_pred CCCEEEEEecCCCCCCCHHHHHHHHHhCCC-ce-----eecCCCCCCCCCcc
Q 009628 474 PGGIIVYSTCTINPGENEALVRYALDRYKF-LS-----LAPQHPRIGGPGLV 519 (530)
Q Consensus 474 pGG~LVYSTCSi~~~ENE~vV~~~L~~~~~-~~-----l~~~~p~~g~pg~~ 519 (530)
. -.+||||||++.+|||+||+..|...|. .+ +.|.|++.|-+++.
T Consensus 337 ~-k~vvystcs~~reene~vv~d~l~~~p~~~~l~~kK~~p~w~~rg~~~~~ 387 (413)
T KOG2360|consen 337 L-KRLVYSTCSLHREENEQVVQEVLQQNPDAKRLAPKKVLPAWPHRGLSTFS 387 (413)
T ss_pred h-hheeeecchhhhhhhhHHHHHHHhhChhHhhhchhhcchhhhhcCCcccc
Confidence 5 6899999999999999999999987764 33 34567777766664
No 14
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.65 E-value=3.5e-15 Score=159.05 Aligned_cols=181 Identities=18% Similarity=0.171 Sum_probs=131.5
Q ss_pred ceeeecCCccccCCCccccccceEEEeccchHHHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHH
Q 009628 220 GIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299 (530)
Q Consensus 220 GlaV~~~~~v~~lP~~~~~~~G~i~lQd~~S~v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv 299 (530)
-+.+++..-.|.+....++++|.|+.|......+.... +|.+|||+|||+|+.+.+++ +.+..+|+++|+|+..+
T Consensus 182 ~~~v~E~g~~f~vdl~~g~ktG~flDqr~~R~~~~~~~---~g~rVLDlfsgtG~~~l~aa--~~ga~~V~~VD~s~~al 256 (396)
T PRK15128 182 LLPIEEHGMKLLVDIQGGHKTGYYLDQRDSRLATRRYV---ENKRVLNCFSYTGGFAVSAL--MGGCSQVVSVDTSQEAL 256 (396)
T ss_pred cEEEEECCEEEEEecccccccCcChhhHHHHHHHHHhc---CCCeEEEeccCCCHHHHHHH--hCCCCEEEEEECCHHHH
Confidence 35566666677777777889999999977776666553 58999999999999987654 35556999999999999
Q ss_pred HHHHHHHHHhCCC--ceEEEEcchhHHHhhcCCCCCCCCccCCCCCccccccccccccccccccchhccCCCCCCccccc
Q 009628 300 MDIQKLAAEMGLK--CITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEK 377 (530)
Q Consensus 300 ~~i~~~a~~~gl~--~i~~~~~Da~k~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (530)
..+++|++.+|+. +++++..|+++.+...
T Consensus 257 ~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~------------------------------------------------- 287 (396)
T PRK15128 257 DIARQNVELNKLDLSKAEFVRDDVFKLLRTY------------------------------------------------- 287 (396)
T ss_pred HHHHHHHHHcCCCCCcEEEEEccHHHHHHHH-------------------------------------------------
Confidence 9999999999985 6999999987753210
Q ss_pred ccccccccccccchhhhhhhhhhccCCCCCCccCCCcccCCCCCCCCCCCeEEEcCCCCCCCCcccchhhhhhHHHHHHH
Q 009628 378 VSNEKGVERTYVSKADTRKNMRRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNH 457 (530)
Q Consensus 378 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~~f~~~sFDrVLlDaPCSglG~rp~l~~~~~t~~~l~~~ 457 (530)
. ....+||.|++|||+.... ...+...
T Consensus 288 -----------------~-------------------------~~~~~fDlVilDPP~f~~~-----------k~~l~~~ 314 (396)
T PRK15128 288 -----------------R-------------------------DRGEKFDVIVMDPPKFVEN-----------KSQLMGA 314 (396)
T ss_pred -----------------H-------------------------hcCCCCCEEEECCCCCCCC-----------hHHHHHH
Confidence 0 0124699999999984421 1122222
Q ss_pred HHHHHHHHHHHHhcCCCCCEEEEEecCCCCC--CCHHHHHHHHHhC-CCceee
Q 009628 458 GKYQRRMFDQAVQLVRPGGIIVYSTCTINPG--ENEALVRYALDRY-KFLSLA 507 (530)
Q Consensus 458 ~~~Qr~ll~~A~~lLkpGG~LVYSTCSi~~~--ENE~vV~~~L~~~-~~~~l~ 507 (530)
.+-..+++..|.++|+|||.|+++|||-+-. +=.++|..+.... ..++++
T Consensus 315 ~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~l 367 (396)
T PRK15128 315 CRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFI 367 (396)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 2223488899999999999999999995544 3455666555433 345554
No 15
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.61 E-value=1.9e-14 Score=152.53 Aligned_cols=183 Identities=20% Similarity=0.231 Sum_probs=139.5
Q ss_pred CCceeeecCCccccCCCccccccceEEEeccchHHHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHH
Q 009628 218 SEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHN 297 (530)
Q Consensus 218 p~GlaV~~~~~v~~lP~~~~~~~G~i~lQd~~S~v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~ 297 (530)
+..+.+.+....|.+....++++|.|..|......+...+. |.+|||+||.+||.+.|.|. ++..+|+.+|.|..
T Consensus 177 ~~~~~i~E~g~kf~v~~~~g~kTGfFlDqR~~R~~l~~~~~---GkrvLNlFsYTGgfSv~Aa~--gGA~~vt~VD~S~~ 251 (393)
T COG1092 177 PEEVVIEENGVKFLVDLVDGLKTGFFLDQRDNRRALGELAA---GKRVLNLFSYTGGFSVHAAL--GGASEVTSVDLSKR 251 (393)
T ss_pred CCcEEEEeCCeEEEEecCCcccceeeHHhHHHHHHHhhhcc---CCeEEEecccCcHHHHHHHh--cCCCceEEEeccHH
Confidence 44566677776777777778899999999988877776664 99999999999999988775 66669999999999
Q ss_pred HHHHHHHHHHHhCCCc--eEEEEcchhHHHhhcCCCCCCCCccCCCCCccccccccccccccccccchhccCCCCCCccc
Q 009628 298 KVMDIQKLAAEMGLKC--ITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCK 375 (530)
Q Consensus 298 kv~~i~~~a~~~gl~~--i~~~~~Da~k~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (530)
-+...++|++.+|++. +.++.+|+++.+.....
T Consensus 252 al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~--------------------------------------------- 286 (393)
T COG1092 252 ALEWARENAELNGLDGDRHRFIVGDVFKWLRKAER--------------------------------------------- 286 (393)
T ss_pred HHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHh---------------------------------------------
Confidence 9999999999999854 88999999987542110
Q ss_pred ccccccccccccccchhhhhhhhhhccCCCCCCccCCCcccCCCCCCCCCCCeEEEcCCCCCCCCcccchhhhhhHHHHH
Q 009628 376 EKVSNEKGVERTYVSKADTRKNMRRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLR 455 (530)
Q Consensus 376 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~~f~~~sFDrVLlDaPCSglG~rp~l~~~~~t~~~l~ 455 (530)
...+||.|++|||--+= +.+...
T Consensus 287 ----------------------------------------------~g~~fDlIilDPPsF~r-----------~k~~~~ 309 (393)
T COG1092 287 ----------------------------------------------RGEKFDLIILDPPSFAR-----------SKKQEF 309 (393)
T ss_pred ----------------------------------------------cCCcccEEEECCccccc-----------Ccccch
Confidence 12579999999997322 222223
Q ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCCCH--HHHHHHH-HhCCCceee
Q 009628 456 NHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENE--ALVRYAL-DRYKFLSLA 507 (530)
Q Consensus 456 ~~~~~Qr~ll~~A~~lLkpGG~LVYSTCSi~~~ENE--~vV~~~L-~~~~~~~l~ 507 (530)
+..+-..+|+..|.++|+|||+|+.|||+-+-...+ ..|..++ +.-...+.+
T Consensus 310 ~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~a~~~~~~~~~~~ 364 (393)
T COG1092 310 SAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIARAAAAAGRRAQEI 364 (393)
T ss_pred hHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHHHHHHHhcCCcEEEe
Confidence 344445699999999999999999999999888775 3344443 333334443
No 16
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.54 E-value=2.4e-14 Score=146.30 Aligned_cols=180 Identities=23% Similarity=0.307 Sum_probs=127.1
Q ss_pred CCceeeecCCccccCCCccccccceEEEeccchHHHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHH
Q 009628 218 SEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHN 297 (530)
Q Consensus 218 p~GlaV~~~~~v~~lP~~~~~~~G~i~lQd~~S~v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~ 297 (530)
+..+.|++..-.|.++...++++|.|..|.....++.... .|.+|||+||.+||.+.+.|. ++..+|+.+|.|..
T Consensus 83 ~~~~~v~E~gl~f~v~l~~gqktGlFlDqR~nR~~v~~~~---~gkrvLnlFsYTGgfsv~Aa~--gGA~~v~~VD~S~~ 157 (286)
T PF10672_consen 83 PEFFTVEENGLKFRVDLTDGQKTGLFLDQRENRKWVRKYA---KGKRVLNLFSYTGGFSVAAAA--GGAKEVVSVDSSKR 157 (286)
T ss_dssp SSEEEEEETTEEEEEESSSSSSTSS-GGGHHHHHHHHHHC---TTCEEEEET-TTTHHHHHHHH--TTESEEEEEES-HH
T ss_pred CCceEEEECCEEEEEEcCCCCcceEcHHHHhhHHHHHHHc---CCCceEEecCCCCHHHHHHHH--CCCCEEEEEeCCHH
Confidence 3445677777778888888899999999999988887765 488999999999999987664 55558999999999
Q ss_pred HHHHHHHHHHHhCCC--ceEEEEcchhHHHhhcCCCCCCCCccCCCCCccccccccccccccccccchhccCCCCCCccc
Q 009628 298 KVMDIQKLAAEMGLK--CITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCK 375 (530)
Q Consensus 298 kv~~i~~~a~~~gl~--~i~~~~~Da~k~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (530)
.++..++|++.+|++ .++++..|+++.+..
T Consensus 158 al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~------------------------------------------------ 189 (286)
T PF10672_consen 158 ALEWAKENAALNGLDLDRHRFIQGDVFKFLKR------------------------------------------------ 189 (286)
T ss_dssp HHHHHHHHHHHTT-CCTCEEEEES-HHHHHHH------------------------------------------------
T ss_pred HHHHHHHHHHHcCCCccceEEEecCHHHHHHH------------------------------------------------
Confidence 999999999999975 589999999886421
Q ss_pred ccccccccccccccchhhhhhhhhhccCCCCCCccCCCcccCCCCCCCCCCCeEEEcCCCCCCCCcccchhhhhhHHHHH
Q 009628 376 EKVSNEKGVERTYVSKADTRKNMRRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLR 455 (530)
Q Consensus 376 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~~f~~~sFDrVLlDaPCSglG~rp~l~~~~~t~~~l~ 455 (530)
+++ ..+||.|++|||.-+-| .+..
T Consensus 190 ------------------~~~--------------------------~~~fD~IIlDPPsF~k~--------~~~~---- 213 (286)
T PF10672_consen 190 ------------------LKK--------------------------GGRFDLIILDPPSFAKS--------KFDL---- 213 (286)
T ss_dssp ------------------HHH--------------------------TT-EEEEEE--SSEESS--------TCEH----
T ss_pred ------------------Hhc--------------------------CCCCCEEEECCCCCCCC--------HHHH----
Confidence 111 14799999999975422 1122
Q ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCCCH--HHHHHHHHhCCCceeec
Q 009628 456 NHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENE--ALVRYALDRYKFLSLAP 508 (530)
Q Consensus 456 ~~~~~Qr~ll~~A~~lLkpGG~LVYSTCSi~~~ENE--~vV~~~L~~~~~~~l~~ 508 (530)
.+-..+++..|.++|+|||.|+.+|||.+-..+. +.++.+-.++..++-..
T Consensus 214 --~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~~l~~~~~~~a~~~~~~~~~~ 266 (286)
T PF10672_consen 214 --ERDYKKLLRRAMKLLKPGGLLLTCSCSHHISPDFLLEAVAEAAREVEFIERLG 266 (286)
T ss_dssp --HHHHHHHHHHHHHTEEEEEEEEEEE--TTS-HHHHHHHHHHHHHHCEEEEEEE
T ss_pred --HHHHHHHHHHHHHhcCCCCEEEEEcCCcccCHHHHHHHHHHhCccceEeeeec
Confidence 1223489999999999999999999998887653 44444444444444333
No 17
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.52 E-value=2.5e-13 Score=129.94 Aligned_cols=136 Identities=26% Similarity=0.365 Sum_probs=114.2
Q ss_pred hHHHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhHHHhhcC
Q 009628 250 SIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKN 329 (530)
Q Consensus 250 S~v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k~v~~~~ 329 (530)
..++...|.|+||++++|++||+|+-|..+| ++.+.|+|+|+|+++.+++.+++|++++|+++++.+.+||-+.+.
T Consensus 23 Ral~ls~L~~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~--- 98 (187)
T COG2242 23 RALTLSKLRPRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALP--- 98 (187)
T ss_pred HHHHHHhhCCCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhc---
Confidence 4566678999999999999999999999999 788999999999999999999999999999999999999876421
Q ss_pred CCCCCCCccCCCCCccccccccccccccccccchhccCCCCCCcccccccccccccccccchhhhhhhhhhccCCCCCCc
Q 009628 330 ESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKVSNEKGVERTYVSKADTRKNMRRMRNGPGRNQ 409 (530)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 409 (530)
T Consensus 99 -------------------------------------------------------------------------------- 98 (187)
T COG2242 99 -------------------------------------------------------------------------------- 98 (187)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCcccCCCCCCCCCCCeEEEcCCCCCCCCcccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCC
Q 009628 410 CLGGRAENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGE 489 (530)
Q Consensus 410 ~~~g~~~~~~~f~~~sFDrVLlDaPCSglG~rp~l~~~~~t~~~l~~~~~~Qr~ll~~A~~lLkpGG~LVYSTCSi~~~E 489 (530)
. . .+||+|++ .|.| . ...+|+.++..|||||+||-..-|+ |
T Consensus 99 ----------~-~-~~~daiFI----GGg~-------------~-------i~~ile~~~~~l~~ggrlV~naitl---E 139 (187)
T COG2242 99 ----------D-L-PSPDAIFI----GGGG-------------N-------IEEILEAAWERLKPGGRLVANAITL---E 139 (187)
T ss_pred ----------C-C-CCCCEEEE----CCCC-------------C-------HHHHHHHHHHHcCcCCeEEEEeecH---H
Confidence 0 1 27999997 2221 1 1188999999999999999988777 9
Q ss_pred CHHHHHHHHHhCCCceeec
Q 009628 490 NEALVRYALDRYKFLSLAP 508 (530)
Q Consensus 490 NE~vV~~~L~~~~~~~l~~ 508 (530)
|+......+++..+.+++.
T Consensus 140 ~~~~a~~~~~~~g~~ei~~ 158 (187)
T COG2242 140 TLAKALEALEQLGGREIVQ 158 (187)
T ss_pred HHHHHHHHHHHcCCceEEE
Confidence 9999999999887645443
No 18
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.48 E-value=4.6e-13 Score=152.39 Aligned_cols=162 Identities=17% Similarity=0.183 Sum_probs=124.7
Q ss_pred eeeecCCccccCCCccccccceEEEeccchHHHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHH
Q 009628 221 IAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300 (530)
Q Consensus 221 laV~~~~~v~~lP~~~~~~~G~i~lQd~~S~v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~ 300 (530)
+.|++..-.|.+....++++|.|+.|.....++.... +|.+|||+|||+|+.+.++|. ++..+|+++|.|+..++
T Consensus 501 ~~v~e~g~~f~v~~~~~~~tG~flDqr~~R~~~~~~~---~g~rVLDlf~gtG~~sl~aa~--~Ga~~V~~vD~s~~al~ 575 (702)
T PRK11783 501 LEVTEYGAKLLVNLTDYLDTGLFLDHRPTRRMIGQMA---KGKDFLNLFAYTGTASVHAAL--GGAKSTTTVDMSNTYLE 575 (702)
T ss_pred EEEEECCEEEEEEcCCCCcceECHHHHHHHHHHHHhc---CCCeEEEcCCCCCHHHHHHHH--CCCCEEEEEeCCHHHHH
Confidence 4455666667777666778999999987766666554 488999999999999999887 34458999999999999
Q ss_pred HHHHHHHHhCCC--ceEEEEcchhHHHhhcCCCCCCCCccCCCCCccccccccccccccccccchhccCCCCCCcccccc
Q 009628 301 DIQKLAAEMGLK--CITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKV 378 (530)
Q Consensus 301 ~i~~~a~~~gl~--~i~~~~~Da~k~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (530)
.+++|++.+|++ .++++..|+++.+..
T Consensus 576 ~a~~N~~~ng~~~~~v~~i~~D~~~~l~~--------------------------------------------------- 604 (702)
T PRK11783 576 WAERNFALNGLSGRQHRLIQADCLAWLKE--------------------------------------------------- 604 (702)
T ss_pred HHHHHHHHhCCCccceEEEEccHHHHHHH---------------------------------------------------
Confidence 999999999986 699999998764210
Q ss_pred cccccccccccchhhhhhhhhhccCCCCCCccCCCcccCCCCCCCCCCCeEEEcCCCCCCCCcccchhhhhhHHHHHHHH
Q 009628 379 SNEKGVERTYVSKADTRKNMRRMRNGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHG 458 (530)
Q Consensus 379 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~~f~~~sFDrVLlDaPCSglG~rp~l~~~~~t~~~l~~~~ 458 (530)
+ ..+||.|++|||+-+.+-. ...+....
T Consensus 605 ------------------------------------------~-~~~fDlIilDPP~f~~~~~---------~~~~~~~~ 632 (702)
T PRK11783 605 ------------------------------------------A-REQFDLIFIDPPTFSNSKR---------MEDSFDVQ 632 (702)
T ss_pred ------------------------------------------c-CCCcCEEEECCCCCCCCCc---------cchhhhHH
Confidence 1 2479999999999664321 11112223
Q ss_pred HHHHHHHHHHHhcCCCCCEEEEEecCCCCCCC
Q 009628 459 KYQRRMFDQAVQLVRPGGIIVYSTCTINPGEN 490 (530)
Q Consensus 459 ~~Qr~ll~~A~~lLkpGG~LVYSTCSi~~~EN 490 (530)
+...+++..+.++|+|||+|++++|+-+....
T Consensus 633 ~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~ 664 (702)
T PRK11783 633 RDHVALIKDAKRLLRPGGTLYFSNNKRGFKMD 664 (702)
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEeCCccCChh
Confidence 34558999999999999999999999876654
No 19
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.44 E-value=4e-12 Score=122.88 Aligned_cols=73 Identities=26% Similarity=0.370 Sum_probs=64.0
Q ss_pred HHHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CceEEEEcchhH
Q 009628 251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALK 323 (530)
Q Consensus 251 ~v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl-~~i~~~~~Da~k 323 (530)
.++...+++++|++|||+|||+|..+..+|.+++..+.|+|+|+++.+++.++++++.+|+ .+++++..|+.+
T Consensus 30 ~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~ 103 (198)
T PRK00377 30 ALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPE 103 (198)
T ss_pred HHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhh
Confidence 4445567899999999999999999999999887778999999999999999999999994 678888887654
No 20
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.43 E-value=6e-13 Score=132.69 Aligned_cols=77 Identities=21% Similarity=0.247 Sum_probs=68.2
Q ss_pred eccchHHHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 246 QNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 246 Qd~~S~v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
+...-..+...+.+.||++|||+|||+|-.|.+++...+ +|+|+++|+|.++++..++.++..|..+|+++.+||..
T Consensus 36 ~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~ 112 (238)
T COG2226 36 HRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAEN 112 (238)
T ss_pred hHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhh
Confidence 444555666777777999999999999999999999887 89999999999999999999999998889999999865
No 21
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.39 E-value=7.8e-12 Score=118.67 Aligned_cols=151 Identities=18% Similarity=0.182 Sum_probs=107.2
Q ss_pred cchHHHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhHHHhh
Q 009628 248 LPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRR 327 (530)
Q Consensus 248 ~~S~v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k~v~~ 327 (530)
.-|++..+.++..++.+|||+|||+|..+..++... .+|+++|.|+..+..++++++..++ .++++..|..+
T Consensus 6 ~d~~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~---- 77 (179)
T TIGR00537 6 EDSLLLEANLRELKPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKLNNV-GLDVVMTDLFK---- 77 (179)
T ss_pred ccHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEccccc----
Confidence 346677777777788999999999999999988742 2899999999999999999988776 46666666432
Q ss_pred cCCCCCCCCccCCCCCccccccccccccccccccchhccCCCCCCcccccccccccccccccchhhhhhhhhhccCCCCC
Q 009628 328 KNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKVSNEKGVERTYVSKADTRKNMRRMRNGPGR 407 (530)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 407 (530)
T Consensus 78 -------------------------------------------------------------------------------- 77 (179)
T TIGR00537 78 -------------------------------------------------------------------------------- 77 (179)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccCCCcccCCCCCCCCCCCeEEEcCCCCCCCCcccc-hhhhhhHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEecCCC
Q 009628 408 NQCLGGRAENSKGFSPNSFDRVLLDAPCSALGLRPRL-FAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTIN 486 (530)
Q Consensus 408 ~~~~~g~~~~~~~f~~~sFDrVLlDaPCSglG~rp~l-~~~~~t~~~l~~~~~~Qr~ll~~A~~lLkpGG~LVYSTCSi~ 486 (530)
+.+.+||.|+++||+....-.... .+..........-...+.++|+++.++|||||++++.+++.+
T Consensus 78 -------------~~~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~ 144 (179)
T TIGR00537 78 -------------GVRGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN 144 (179)
T ss_pred -------------ccCCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC
Confidence 112479999999999544321110 000000000001123467999999999999999999987774
Q ss_pred CCCCHHHHHHHHHhCC
Q 009628 487 PGENEALVRYALDRYK 502 (530)
Q Consensus 487 ~~ENE~vV~~~L~~~~ 502 (530)
++..+...|++..
T Consensus 145 ---~~~~~~~~l~~~g 157 (179)
T TIGR00537 145 ---GEPDTFDKLDERG 157 (179)
T ss_pred ---ChHHHHHHHHhCC
Confidence 5677778887765
No 22
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.38 E-value=3.7e-12 Score=132.59 Aligned_cols=123 Identities=20% Similarity=0.231 Sum_probs=96.2
Q ss_pred HHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhHHHhhcCCCCC
Q 009628 254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESND 333 (530)
Q Consensus 254 ~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k~v~~~~~~~~ 333 (530)
+.++++++|++|||.|||+|+.+..++. + ...|+|+|+++.++...++|++.+|+.++.++..|+.+.
T Consensus 175 ~~l~~~~~g~~vLDp~cGtG~~lieaa~-~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l--------- 242 (329)
T TIGR01177 175 VNLARVTEGDRVLDPFCGTGGFLIEAGL-M--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKL--------- 242 (329)
T ss_pred HHHhCCCCcCEEEECCCCCCHHHHHHHH-h--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcC---------
Confidence 4456789999999999999999877554 4 368999999999999999999999998888888886541
Q ss_pred CCCccCCCCCccccccccccccccccccchhccCCCCCCcccccccccccccccccchhhhhhhhhhccCCCCCCccCCC
Q 009628 334 EPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKVSNEKGVERTYVSKADTRKNMRRMRNGPGRNQCLGG 413 (530)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~g 413 (530)
T Consensus 243 -------------------------------------------------------------------------------- 242 (329)
T TIGR01177 243 -------------------------------------------------------------------------------- 242 (329)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCCCCCCeEEEcCCCCCCCCcccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEecCC
Q 009628 414 RAENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTI 485 (530)
Q Consensus 414 ~~~~~~~f~~~sFDrVLlDaPCSglG~rp~l~~~~~t~~~l~~~~~~Qr~ll~~A~~lLkpGG~LVYSTCSi 485 (530)
++..++||.|++||||..... .. ......++.++|..+.+.|||||+++|.+++-
T Consensus 243 ------~~~~~~~D~Iv~dPPyg~~~~---~~--------~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 243 ------PLSSESVDAIATDPPYGRSTT---AA--------GDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred ------CcccCCCCEEEECCCCcCccc---cc--------CCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 122468999999999943211 00 01123456799999999999999999998865
No 23
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.38 E-value=1.8e-12 Score=113.36 Aligned_cols=116 Identities=22% Similarity=0.297 Sum_probs=89.2
Q ss_pred CCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CceEEEEcchhHHHhhcCCCCCCCCccCC
Q 009628 262 GERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKAVRRKNESNDEPNMCNS 340 (530)
Q Consensus 262 Ge~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl-~~i~~~~~Da~k~v~~~~~~~~~~~~~~~ 340 (530)
|.+|||+|||.|..+.+++... ..+++++|+++..++..+++++..++ ..++++..|..+...
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~-------------- 64 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPE-------------- 64 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHH--------------
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchh--------------
Confidence 6799999999999999998875 68999999999999999999999988 469999999876420
Q ss_pred CCCccccccccccccccccccchhccCCCCCCcccccccccccccccccchhhhhhhhhhccCCCCCCccCCCcccCCCC
Q 009628 341 KDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKVSNEKGVERTYVSKADTRKNMRRMRNGPGRNQCLGGRAENSKG 420 (530)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~~ 420 (530)
.
T Consensus 65 -------------------------------------------------------------------------------~ 65 (117)
T PF13659_consen 65 -------------------------------------------------------------------------------P 65 (117)
T ss_dssp -------------------------------------------------------------------------------T
T ss_pred -------------------------------------------------------------------------------h
Confidence 1
Q ss_pred CCCCCCCeEEEcCCCCCCCCcccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEecC
Q 009628 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCT 484 (530)
Q Consensus 421 f~~~sFDrVLlDaPCSglG~rp~l~~~~~t~~~l~~~~~~Qr~ll~~A~~lLkpGG~LVYSTCS 484 (530)
+..++||.|+.|||.......+... .+...++++++.++|||||++++.+|.
T Consensus 66 ~~~~~~D~Iv~npP~~~~~~~~~~~------------~~~~~~~~~~~~~~L~~gG~~~~~~~~ 117 (117)
T PF13659_consen 66 LPDGKFDLIVTNPPYGPRSGDKAAL------------RRLYSRFLEAAARLLKPGGVLVFITPA 117 (117)
T ss_dssp CTTT-EEEEEE--STTSBTT----G------------GCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred ccCceeEEEEECCCCccccccchhh------------HHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 3457899999999996532111100 113448999999999999999999873
No 24
>PTZ00146 fibrillarin; Provisional
Probab=99.37 E-value=1.2e-11 Score=126.53 Aligned_cols=64 Identities=28% Similarity=0.358 Sum_probs=55.4
Q ss_pred cCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchh
Q 009628 257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (530)
Q Consensus 257 LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (530)
+.++||++|||+|||||.+|.|+|.++.++|.|+|+|.++.....+.+.+++. ++|.++..|+.
T Consensus 128 l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~NI~~I~~Da~ 191 (293)
T PTZ00146 128 IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--PNIVPIIEDAR 191 (293)
T ss_pred eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCCEEEECCcc
Confidence 46799999999999999999999999998999999999988777777777643 67888888764
No 25
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.37 E-value=7.8e-13 Score=131.74 Aligned_cols=73 Identities=27% Similarity=0.299 Sum_probs=55.1
Q ss_pred HHHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 251 ~v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
..+...+.+++|++|||+|||+|--|..++...+++|+|+++|.|+.+++..++.++..+..+|+++..|+..
T Consensus 37 ~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~ 109 (233)
T PF01209_consen 37 RKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAED 109 (233)
T ss_dssp SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB
T ss_pred HHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHH
Confidence 3556677889999999999999999999998888889999999999999999999999998899999998754
No 26
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.36 E-value=2.5e-12 Score=111.45 Aligned_cols=60 Identities=37% Similarity=0.406 Sum_probs=53.2
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CceEEEEcch
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDA 321 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl-~~i~~~~~Da 321 (530)
||.+|||+|||+|..+..++++. ...+|+|+|.|+..+..+++++++.+. .+|+++..|+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~ 61 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA 61 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC
T ss_pred CCCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc
Confidence 68999999999999999999943 468999999999999999999977665 5699999887
No 27
>PRK14967 putative methyltransferase; Provisional
Probab=99.32 E-value=4.6e-11 Score=117.56 Aligned_cols=78 Identities=29% Similarity=0.346 Sum_probs=58.7
Q ss_pred ceEEEeccchHHHHHhc---CCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEE
Q 009628 241 GEIFLQNLPSIVTAHAL---DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTY 317 (530)
Q Consensus 241 G~i~lQd~~S~v~~~~L---dpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~ 317 (530)
|.+..|. .|.+.+..+ .+++|++|||+|||+|..+..++.. ..++|+++|+++.++..++++++..++. ++++
T Consensus 14 g~~~p~~-ds~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~--~~~~v~~vD~s~~~l~~a~~n~~~~~~~-~~~~ 89 (223)
T PRK14967 14 GVYRPQE-DTQLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAA--GAGSVTAVDISRRAVRSARLNALLAGVD-VDVR 89 (223)
T ss_pred CCcCCCC-cHHHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHhCCe-eEEE
Confidence 3333343 344444433 5688999999999999999988874 3469999999999999999999988873 6667
Q ss_pred Ecchh
Q 009628 318 KLDAL 322 (530)
Q Consensus 318 ~~Da~ 322 (530)
..|..
T Consensus 90 ~~d~~ 94 (223)
T PRK14967 90 RGDWA 94 (223)
T ss_pred ECchh
Confidence 66643
No 28
>PRK04266 fibrillarin; Provisional
Probab=99.32 E-value=3.9e-11 Score=119.06 Aligned_cols=72 Identities=25% Similarity=0.363 Sum_probs=61.1
Q ss_pred ccchHHHHHh--cCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcch
Q 009628 247 NLPSIVTAHA--LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321 (530)
Q Consensus 247 d~~S~v~~~~--LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da 321 (530)
...+.+.+.+ +++++|++|||+|||+|..|.++|..++ .|.|+|+|+++.+++.+.+++++. ++|.++..|+
T Consensus 56 ~~~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~--~nv~~i~~D~ 129 (226)
T PRK04266 56 KLAAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER--KNIIPILADA 129 (226)
T ss_pred chHHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhc--CCcEEEECCC
Confidence 4455555555 8899999999999999999999999886 789999999999999998888764 6788887775
No 29
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.31 E-value=1.2e-10 Score=119.33 Aligned_cols=144 Identities=23% Similarity=0.293 Sum_probs=102.8
Q ss_pred CCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEEcchhHHHhhcCCCCCCCC
Q 009628 258 DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALKAVRRKNESNDEPN 336 (530)
Q Consensus 258 dpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~-~i~~~~~Da~k~v~~~~~~~~~~~ 336 (530)
.++++.+|||+|||+|..+..+|... +..+|+|+|+|+..+..++++++++|+. .|+++..|..+
T Consensus 118 ~~~~~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~------------- 183 (284)
T TIGR03533 118 EPEPVKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA------------- 183 (284)
T ss_pred ccCCCCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-------------
Confidence 34556799999999999999999865 3579999999999999999999999985 58888887643
Q ss_pred ccCCCCCccccccccccccccccccchhccCCCCCCcccccccccccccccccchhhhhhhhhhccCCCCCCccCCCccc
Q 009628 337 MCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKVSNEKGVERTYVSKADTRKNMRRMRNGPGRNQCLGGRAE 416 (530)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~g~~~ 416 (530)
T Consensus 184 -------------------------------------------------------------------------------- 183 (284)
T TIGR03533 184 -------------------------------------------------------------------------------- 183 (284)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCCcccchh--hhhhHHHH---HHHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCCCH
Q 009628 417 NSKGFSPNSFDRVLLDAPCSALGLRPRLFA--AEETIQSL---RNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENE 491 (530)
Q Consensus 417 ~~~~f~~~sFDrVLlDaPCSglG~rp~l~~--~~~t~~~l---~~~~~~Qr~ll~~A~~lLkpGG~LVYSTCSi~~~ENE 491 (530)
.++..+||.|++|||+...+....+.. ..+....+ ..-...+++++..|.++|+|||+|++-+. . ..
T Consensus 184 ---~~~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g---~--~~ 255 (284)
T TIGR03533 184 ---ALPGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG---N--SM 255 (284)
T ss_pred ---ccCCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC---c--CH
Confidence 112347999999999977653211110 00000111 01124567999999999999999986643 2 33
Q ss_pred HHHHHHHHhCCC
Q 009628 492 ALVRYALDRYKF 503 (530)
Q Consensus 492 ~vV~~~L~~~~~ 503 (530)
+-|+..+.++++
T Consensus 256 ~~v~~~~~~~~~ 267 (284)
T TIGR03533 256 EALEEAYPDVPF 267 (284)
T ss_pred HHHHHHHHhCCC
Confidence 467777776654
No 30
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.30 E-value=5.7e-11 Score=114.44 Aligned_cols=82 Identities=18% Similarity=0.238 Sum_probs=71.1
Q ss_pred ceEEEeccchHHHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcc
Q 009628 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320 (530)
Q Consensus 241 G~i~lQd~~S~v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~D 320 (530)
|.-..|+..+.+....+++++|++|||+|||+|..|..+|.+. +.++|+|+|+|+.+++.++++++++++.+++++..|
T Consensus 20 ~~p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d 98 (196)
T PRK07402 20 GIPLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGS 98 (196)
T ss_pred CCCCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECc
Confidence 3335677777777888899999999999999999999998764 458999999999999999999999999889999888
Q ss_pred hhH
Q 009628 321 ALK 323 (530)
Q Consensus 321 a~k 323 (530)
+..
T Consensus 99 ~~~ 101 (196)
T PRK07402 99 APE 101 (196)
T ss_pred hHH
Confidence 754
No 31
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.30 E-value=2.8e-11 Score=118.47 Aligned_cols=71 Identities=17% Similarity=0.336 Sum_probs=64.2
Q ss_pred HHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchh
Q 009628 252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (530)
Q Consensus 252 v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (530)
....++++++|++|||+|||+|..|..+|.+.+..|.|+++|+++..+..++++++++|+++++++..|+.
T Consensus 68 ~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~ 138 (215)
T TIGR00080 68 MMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGT 138 (215)
T ss_pred HHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcc
Confidence 34556789999999999999999999999988777899999999999999999999999988988888864
No 32
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.29 E-value=1.4e-11 Score=116.41 Aligned_cols=75 Identities=23% Similarity=0.279 Sum_probs=64.0
Q ss_pred ccchHHHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchh
Q 009628 247 NLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (530)
Q Consensus 247 d~~S~v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (530)
+..|.+.+..+...++.+|||+|||+|..+..++... +..+|+++|+++..+..++++++.+++..++++..|..
T Consensus 17 d~~t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~ 91 (170)
T PF05175_consen 17 DAGTRLLLDNLPKHKGGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLF 91 (170)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTT
T ss_pred CHHHHHHHHHHhhccCCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccc
Confidence 4566677777776688999999999999999999864 45689999999999999999999999988888888754
No 33
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.29 E-value=5.1e-11 Score=119.86 Aligned_cols=141 Identities=22% Similarity=0.217 Sum_probs=99.2
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhHHHhhcCCCCCCCCccCC
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNS 340 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k~v~~~~~~~~~~~~~~~ 340 (530)
++.+|||+|||+|..+..++..+. ..+|+|+|+|+..+..+++|++.+|. +++..|..+.+.
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~~-~~~v~~vDis~~al~~A~~N~~~~~~---~~~~~D~~~~l~-------------- 147 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAALD-GIELHAADIDPAAVRCARRNLADAGG---TVHEGDLYDALP-------------- 147 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCC---EEEEeechhhcc--------------
Confidence 356899999999999999998754 35899999999999999999998763 566677543210
Q ss_pred CCCccccccccccccccccccchhccCCCCCCcccccccccccccccccchhhhhhhhhhccCCCCCCccCCCcccCCCC
Q 009628 341 KDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKVSNEKGVERTYVSKADTRKNMRRMRNGPGRNQCLGGRAENSKG 420 (530)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~~ 420 (530)
.
T Consensus 148 -------------------------------------------------------------------------------~ 148 (251)
T TIGR03704 148 -------------------------------------------------------------------------------T 148 (251)
T ss_pred -------------------------------------------------------------------------------h
Confidence 0
Q ss_pred CCCCCCCeEEEcCCCCCCCCc----ccchhhhhhHHHH---HHHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCCCHHH
Q 009628 421 FSPNSFDRVLLDAPCSALGLR----PRLFAAEETIQSL---RNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEAL 493 (530)
Q Consensus 421 f~~~sFDrVLlDaPCSglG~r----p~l~~~~~t~~~l---~~~~~~Qr~ll~~A~~lLkpGG~LVYSTCSi~~~ENE~v 493 (530)
....+||.|++||||...+.. |.... .+....+ .+....+++++..|.++|||||++++.+.. ++..-
T Consensus 149 ~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~-~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~----~~~~~ 223 (251)
T TIGR03704 149 ALRGRVDILAANAPYVPTDAIALMPPEARD-HEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE----RQAPL 223 (251)
T ss_pred hcCCCEeEEEECCCCCCchhhhcCCHHHHh-CCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc----chHHH
Confidence 012469999999999876642 22111 1111111 233456889999999999999999998653 33444
Q ss_pred HHHHHHhCCC
Q 009628 494 VRYALDRYKF 503 (530)
Q Consensus 494 V~~~L~~~~~ 503 (530)
|...++++.+
T Consensus 224 v~~~l~~~g~ 233 (251)
T TIGR03704 224 AVEAFARAGL 233 (251)
T ss_pred HHHHHHHCCC
Confidence 6666766553
No 34
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=2e-10 Score=114.65 Aligned_cols=83 Identities=18% Similarity=0.165 Sum_probs=72.0
Q ss_pred ccceEEEeccchHHHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-eEEE
Q 009628 239 LEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTY 317 (530)
Q Consensus 239 ~~G~i~lQd~~S~v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~-i~~~ 317 (530)
+.+--.+--+.|...+..+++.||++|||.+.|+|..|..||...++.|+|+.+|+.+...+.+++|+++.|+.+ |+..
T Consensus 72 ~R~tQiIyPKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~ 151 (256)
T COG2519 72 KRRTQIIYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLK 151 (256)
T ss_pred cCCCceecCCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEE
Confidence 445555666667788889999999999999999999999999999999999999999999999999999999876 6655
Q ss_pred Ecch
Q 009628 318 KLDA 321 (530)
Q Consensus 318 ~~Da 321 (530)
..|.
T Consensus 152 ~~Dv 155 (256)
T COG2519 152 LGDV 155 (256)
T ss_pred eccc
Confidence 5554
No 35
>PRK14968 putative methyltransferase; Provisional
Probab=99.24 E-value=2.6e-10 Score=107.51 Aligned_cols=151 Identities=19% Similarity=0.245 Sum_probs=103.6
Q ss_pred hHHHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc--eEEEEcchhHHHhh
Q 009628 250 SIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC--ITTYKLDALKAVRR 327 (530)
Q Consensus 250 S~v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~--i~~~~~Da~k~v~~ 327 (530)
+.+....+...+|.+|||+|||.|..+..++.. ...|+++|+|+..+..++++++..++.. +.++..|..+
T Consensus 12 ~~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~---- 84 (188)
T PRK14968 12 SFLLAENAVDKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE---- 84 (188)
T ss_pred HHHHHHhhhccCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc----
Confidence 455566666688999999999999999999886 4789999999999999999998888765 6666655422
Q ss_pred cCCCCCCCCccCCCCCccccccccccccccccccchhccCCCCCCcccccccccccccccccchhhhhhhhhhccCCCCC
Q 009628 328 KNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKVSNEKGVERTYVSKADTRKNMRRMRNGPGR 407 (530)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 407 (530)
T Consensus 85 -------------------------------------------------------------------------------- 84 (188)
T PRK14968 85 -------------------------------------------------------------------------------- 84 (188)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccCCCcccCCCCCCCCCCCeEEEcCCCCCCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEecCCC
Q 009628 408 NQCLGGRAENSKGFSPNSFDRVLLDAPCSALGLRPRLF-AAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTIN 486 (530)
Q Consensus 408 ~~~~~g~~~~~~~f~~~sFDrVLlDaPCSglG~rp~l~-~~~~t~~~l~~~~~~Qr~ll~~A~~lLkpGG~LVYSTCSi~ 486 (530)
.+...+||.|++++|+...+-..... +.......-........+++.++.++|||||.+++..+++.
T Consensus 85 ------------~~~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~ 152 (188)
T PRK14968 85 ------------PFRGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLT 152 (188)
T ss_pred ------------cccccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccC
Confidence 12234799999999985543111100 00000000001123355899999999999999988877763
Q ss_pred CCCCHHHHHHHHHhCC
Q 009628 487 PGENEALVRYALDRYK 502 (530)
Q Consensus 487 ~~ENE~vV~~~L~~~~ 502 (530)
+.+-+..++.+++
T Consensus 153 ---~~~~l~~~~~~~g 165 (188)
T PRK14968 153 ---GEDEVLEYLEKLG 165 (188)
T ss_pred ---CHHHHHHHHHHCC
Confidence 3344556676665
No 36
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.24 E-value=2.7e-10 Score=112.57 Aligned_cols=61 Identities=30% Similarity=0.321 Sum_probs=53.8
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchh
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (530)
.+.+|||+|||+|..+..++.... ...|+++|.++.++..++++++..++.++.++..|++
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~ 147 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERP-DARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWF 147 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchh
Confidence 456899999999999999998764 4699999999999999999999999988888888754
No 37
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.23 E-value=1.1e-10 Score=114.70 Aligned_cols=71 Identities=24% Similarity=0.342 Sum_probs=63.0
Q ss_pred HHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchh
Q 009628 252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (530)
Q Consensus 252 v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (530)
.....+++++|.+|||+|||+|..+..++...++.+.|+++|.|+..+..++++++..++++++++..|+.
T Consensus 36 ~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~ 106 (231)
T TIGR02752 36 DTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAM 106 (231)
T ss_pred HHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechh
Confidence 45557788999999999999999999999987777899999999999999999998888888888888864
No 38
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.22 E-value=2.1e-10 Score=114.93 Aligned_cols=165 Identities=22% Similarity=0.285 Sum_probs=123.0
Q ss_pred ccchHHHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-eEEEEcchhHHH
Q 009628 247 NLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALKAV 325 (530)
Q Consensus 247 d~~S~v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~-i~~~~~Da~k~v 325 (530)
+..+++.+.+..+....+|||+|||.|.-.+.+|+...+ .+|+++|+++...+.++++.+-.++.. |++++.|.....
T Consensus 30 ~~DaiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~ 108 (248)
T COG4123 30 GTDAILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFL 108 (248)
T ss_pred ccHHHHHHhhcccccCCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhh
Confidence 345788888888888999999999999999999986543 899999999999999999999988865 888888865421
Q ss_pred hhcCCCCCCCCccCCCCCccccccccccccccccccchhccCCCCCCcccccccccccccccccchhhhhhhhhhccCCC
Q 009628 326 RRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKVSNEKGVERTYVSKADTRKNMRRMRNGP 405 (530)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 405 (530)
.
T Consensus 109 ~------------------------------------------------------------------------------- 109 (248)
T COG4123 109 K------------------------------------------------------------------------------- 109 (248)
T ss_pred h-------------------------------------------------------------------------------
Confidence 0
Q ss_pred CCCccCCCcccCCCCCCCCCCCeEEEcCCCCCCCCcccchhhhhhHHHHHHHHHHH-----HHHHHHHHhcCCCCCEEEE
Q 009628 406 GRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQ-----RRMFDQAVQLVRPGGIIVY 480 (530)
Q Consensus 406 ~~~~~~~g~~~~~~~f~~~sFDrVLlDaPCSglG~rp~l~~~~~t~~~l~~~~~~Q-----r~ll~~A~~lLkpGG~LVY 480 (530)
.+...+||.|+++||.-..|.+- +....+..++++ ..++..|.++||+||.+.+
T Consensus 110 --------------~~~~~~fD~Ii~NPPyf~~~~~~-------~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~ 168 (248)
T COG4123 110 --------------ALVFASFDLIICNPPYFKQGSRL-------NENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAF 168 (248)
T ss_pred --------------cccccccCEEEeCCCCCCCcccc-------CcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEE
Confidence 12234899999999998888650 111111112111 2789999999999999987
Q ss_pred EecCCCCCCCHHHHHHHHHhCCC--ceeecCCCCCCCC
Q 009628 481 STCTINPGENEALVRYALDRYKF--LSLAPQHPRIGGP 516 (530)
Q Consensus 481 STCSi~~~ENE~vV~~~L~~~~~--~~l~~~~p~~g~p 516 (530)
. ++.|.=.-+...|.+|.. .++...+|+.|.+
T Consensus 169 V----~r~erl~ei~~~l~~~~~~~k~i~~V~p~~~k~ 202 (248)
T COG4123 169 V----HRPERLAEIIELLKSYNLEPKRIQFVYPKIGKA 202 (248)
T ss_pred E----ecHHHHHHHHHHHHhcCCCceEEEEecCCCCCc
Confidence 4 666666666667776653 5666777777543
No 39
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.22 E-value=2e-10 Score=109.93 Aligned_cols=56 Identities=27% Similarity=0.343 Sum_probs=45.0
Q ss_pred hcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchh
Q 009628 256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (530)
Q Consensus 256 ~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (530)
.-.+++|++|||+|||||+.|.+++..+...++|+|+|+|+.+ +..+++++..|+.
T Consensus 27 ~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~ 82 (188)
T TIGR00438 27 FKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFT 82 (188)
T ss_pred hcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCC
Confidence 3456889999999999999999999988777899999999854 2345666766653
No 40
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.22 E-value=2.6e-10 Score=99.93 Aligned_cols=67 Identities=27% Similarity=0.371 Sum_probs=58.2
Q ss_pred HHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcch
Q 009628 254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321 (530)
Q Consensus 254 ~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da 321 (530)
...++++++++|||+|||+|..+..++..+.+ ++|+++|.|+.++..++++++.+++..++++..|+
T Consensus 12 ~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~ 78 (124)
T TIGR02469 12 LSKLRLRPGDVLWDIGAGSGSITIEAARLVPN-GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDA 78 (124)
T ss_pred HHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCC-ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccc
Confidence 34567788999999999999999999997654 89999999999999999999999887777777664
No 41
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.21 E-value=1.6e-10 Score=119.87 Aligned_cols=65 Identities=18% Similarity=0.217 Sum_probs=57.4
Q ss_pred hcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 256 ~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
.++..++.+|||+|||.|..+..+|.. ..+|+|+|.++..++.++++++.+|+++++++..|+.+
T Consensus 168 ~l~~~~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~ 232 (315)
T PRK03522 168 WVRELPPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQ 232 (315)
T ss_pred HHHhcCCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHH
Confidence 344456799999999999999999983 36899999999999999999999999889999999865
No 42
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.21 E-value=3.7e-10 Score=107.94 Aligned_cols=71 Identities=17% Similarity=0.236 Sum_probs=60.6
Q ss_pred hHHHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcch
Q 009628 250 SIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321 (530)
Q Consensus 250 S~v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da 321 (530)
-..+...|++.++.+|||+|||+|..+..++... ++++|+++|+++..+..++++++++++..++++..|+
T Consensus 20 r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~ 90 (187)
T PRK08287 20 RALALSKLELHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEA 90 (187)
T ss_pred HHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCc
Confidence 3445567788899999999999999999999864 5689999999999999999999999887787777664
No 43
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.20 E-value=1.4e-10 Score=112.82 Aligned_cols=61 Identities=16% Similarity=0.104 Sum_probs=55.5
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchh
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (530)
++.+|||+|||+|..+..+|..+ +.+.|+|+|.|+.++..++++++..+++++.++..|+.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~ 100 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAV 100 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHH
Confidence 67899999999999999999876 44789999999999999999999999988999999873
No 44
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.20 E-value=2.4e-10 Score=111.30 Aligned_cols=70 Identities=17% Similarity=0.311 Sum_probs=62.0
Q ss_pred HHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-eEEEEcchh
Q 009628 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDAL 322 (530)
Q Consensus 253 ~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~-i~~~~~Da~ 322 (530)
...+|++++|++|||+|||+|..|..+|.+++..|+|+++|+++..+..++++++++|+.+ ++++..|+.
T Consensus 64 ~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~ 134 (205)
T PRK13944 64 MCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGK 134 (205)
T ss_pred HHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcc
Confidence 3456789999999999999999999999998777899999999999999999999999864 788887754
No 45
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.20 E-value=1.8e-10 Score=112.92 Aligned_cols=71 Identities=18% Similarity=0.356 Sum_probs=64.2
Q ss_pred HHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchh
Q 009628 252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (530)
Q Consensus 252 v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (530)
....++++++|++|||+|||+|..|..+|.+++..++|+++|+++..+..++++++++|+.+|++...|+.
T Consensus 67 ~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~ 137 (212)
T PRK13942 67 IMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGT 137 (212)
T ss_pred HHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcc
Confidence 34557789999999999999999999999998877999999999999999999999999988988888864
No 46
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.19 E-value=6.2e-10 Score=111.91 Aligned_cols=144 Identities=21% Similarity=0.223 Sum_probs=100.2
Q ss_pred cCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhHHHhhcCCCCCCCC
Q 009628 257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPN 336 (530)
Q Consensus 257 LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k~v~~~~~~~~~~~ 336 (530)
+...++.+|||+|||+|..+..++..+ +...|+++|+|+..+..++++++.....++.++..|...
T Consensus 104 ~~~~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~------------- 169 (275)
T PRK09328 104 LLLKEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE------------- 169 (275)
T ss_pred ccccCCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC-------------
Confidence 345678899999999999999999876 458999999999999999999883334557777776532
Q ss_pred ccCCCCCccccccccccccccccccchhccCCCCCCcccccccccccccccccchhhhhhhhhhccCCCCCCccCCCccc
Q 009628 337 MCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKVSNEKGVERTYVSKADTRKNMRRMRNGPGRNQCLGGRAE 416 (530)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~g~~~ 416 (530)
T Consensus 170 -------------------------------------------------------------------------------- 169 (275)
T PRK09328 170 -------------------------------------------------------------------------------- 169 (275)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCCcc----cchhhhhhHHHH---HHHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCC
Q 009628 417 NSKGFSPNSFDRVLLDAPCSALGLRP----RLFAAEETIQSL---RNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGE 489 (530)
Q Consensus 417 ~~~~f~~~sFDrVLlDaPCSglG~rp----~l~~~~~t~~~l---~~~~~~Qr~ll~~A~~lLkpGG~LVYSTCSi~~~E 489 (530)
.+..++||.|++|||+...+... .... .+....+ .+....+++++.++.++|||||++++.+. . .
T Consensus 170 ---~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~-~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g-~---~ 241 (275)
T PRK09328 170 ---PLPGGRFDLIVSNPPYIPEADIHLLQPEVRD-HEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG-Y---D 241 (275)
T ss_pred ---cCCCCceeEEEECCCcCCcchhhhCCchhhh-cCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC-c---h
Confidence 11236899999999998765422 1110 0000111 11234567999999999999999998542 2 2
Q ss_pred CHHHHHHHHHhCC
Q 009628 490 NEALVRYALDRYK 502 (530)
Q Consensus 490 NE~vV~~~L~~~~ 502 (530)
..+.+..++.+..
T Consensus 242 ~~~~~~~~l~~~g 254 (275)
T PRK09328 242 QGEAVRALLAAAG 254 (275)
T ss_pred HHHHHHHHHHhCC
Confidence 2344666776654
No 47
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.18 E-value=1.9e-10 Score=116.32 Aligned_cols=71 Identities=20% Similarity=0.281 Sum_probs=56.4
Q ss_pred HHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH---hCCCceEEEEcchh
Q 009628 252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAE---MGLKCITTYKLDAL 322 (530)
Q Consensus 252 v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~---~gl~~i~~~~~Da~ 322 (530)
.+...+.++++++|||+|||+|..+..++..++..+.|+|+|.|+.++..+++++.. .+..+|+++..|+.
T Consensus 64 ~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~ 137 (261)
T PLN02233 64 MAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDAT 137 (261)
T ss_pred HHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccc
Confidence 445567888999999999999999999988777778999999999999988766532 23456777777653
No 48
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.17 E-value=1.8e-10 Score=106.24 Aligned_cols=64 Identities=25% Similarity=0.318 Sum_probs=57.9
Q ss_pred CCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 260 qpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
+.+.+|||+|||+|..+..++..+.+.++|+++|.|+.++..++++++++++++++++..|+..
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~ 65 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIED 65 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTC
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhc
Confidence 5788999999999999999997666778999999999999999999999999999999998754
No 49
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.16 E-value=2.8e-10 Score=123.27 Aligned_cols=66 Identities=32% Similarity=0.418 Sum_probs=59.5
Q ss_pred HhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 255 ~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
..+++++|++|||+|||+|..|..+|... .+|+|+|.|+..+..++++++.+|+++++++..|+.+
T Consensus 291 ~~l~~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~ 356 (443)
T PRK13168 291 EWLDPQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEE 356 (443)
T ss_pred HHhcCCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHH
Confidence 34567899999999999999999998753 6899999999999999999999999999999999865
No 50
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.16 E-value=2.1e-10 Score=115.27 Aligned_cols=78 Identities=22% Similarity=0.286 Sum_probs=62.6
Q ss_pred EEEeccchHHHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEEcch
Q 009628 243 IFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDA 321 (530)
Q Consensus 243 i~lQd~~S~v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~-~i~~~~~Da 321 (530)
+|.-| ..++...|++.||.+||+.+.|+|+.|.+||..+++.|+|+.+|....+.+.++++.++.|+. +|++...|.
T Consensus 24 iYpkD--~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv 101 (247)
T PF08704_consen 24 IYPKD--ISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDV 101 (247)
T ss_dssp --HHH--HHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-G
T ss_pred eeCch--HHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecce
Confidence 44444 446667899999999999999999999999999999999999999999999999999999996 688888885
Q ss_pred h
Q 009628 322 L 322 (530)
Q Consensus 322 ~ 322 (530)
.
T Consensus 102 ~ 102 (247)
T PF08704_consen 102 C 102 (247)
T ss_dssp G
T ss_pred e
Confidence 4
No 51
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.16 E-value=3.5e-10 Score=117.11 Aligned_cols=61 Identities=30% Similarity=0.341 Sum_probs=53.2
Q ss_pred CCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEEcchhH
Q 009628 262 GERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALK 323 (530)
Q Consensus 262 Ge~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~-~i~~~~~Da~k 323 (530)
+.+|||+|||+|..+.++|... +...|+|+|+|+..+..++++++.+|+. .|++++.|..+
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~ 195 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA 195 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh
Confidence 3689999999999999998864 4579999999999999999999999985 48888888643
No 52
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.15 E-value=3.9e-10 Score=113.85 Aligned_cols=66 Identities=18% Similarity=0.197 Sum_probs=58.6
Q ss_pred cCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchh
Q 009628 257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (530)
Q Consensus 257 LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (530)
.++++|++|||+|||+|..+..++..++..++|+++|.++.++..++++++.+|+.+++++..|+.
T Consensus 73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~ 138 (272)
T PRK11873 73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIE 138 (272)
T ss_pred ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchh
Confidence 467899999999999998888888888878899999999999999999999999888888777753
No 53
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.15 E-value=5.1e-10 Score=114.35 Aligned_cols=61 Identities=23% Similarity=0.221 Sum_probs=53.2
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-eEEEEcchh
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDAL 322 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~-i~~~~~Da~ 322 (530)
++.+|||+|||+|..+..+|.... ..+|+|+|+|+..+..++++++++++.. +++++.|..
T Consensus 114 ~~~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~ 175 (284)
T TIGR00536 114 PILHILDLGTGSGCIALALAYEFP-NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLF 175 (284)
T ss_pred CCCEEEEEeccHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchh
Confidence 336999999999999999998753 4699999999999999999999999865 888888754
No 54
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.14 E-value=2.6e-10 Score=113.62 Aligned_cols=134 Identities=23% Similarity=0.363 Sum_probs=109.5
Q ss_pred HHHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCC-----cEEEEEeCCHHHHHHHHHHHHHhCCC---ceEEEEcchh
Q 009628 251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDE-----GEVVAVDRSHNKVMDIQKLAAEMGLK---CITTYKLDAL 322 (530)
Q Consensus 251 ~v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~-----G~VvA~D~s~~kv~~i~~~a~~~gl~---~i~~~~~Da~ 322 (530)
-+.+..|+|.+|+++||||+|+|-.|.-|....+.+ +.|+.+|+|++++...++++++.++. |+.++..||.
T Consensus 90 d~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE 169 (296)
T KOG1540|consen 90 DMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAE 169 (296)
T ss_pred HHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcc
Confidence 355667899999999999999999999999888765 89999999999999999999988763 3666666764
Q ss_pred HHHhhcCCCCCCCCccCCCCCccccccccccccccccccchhccCCCCCCcccccccccccccccccchhhhhhhhhhcc
Q 009628 323 KAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKVSNEKGVERTYVSKADTRKNMRRMR 402 (530)
Q Consensus 323 k~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 402 (530)
+.
T Consensus 170 ~L------------------------------------------------------------------------------ 171 (296)
T KOG1540|consen 170 DL------------------------------------------------------------------------------ 171 (296)
T ss_pred cC------------------------------------------------------------------------------
Confidence 31
Q ss_pred CCCCCCccCCCcccCCCCCCCCCCCeEEEcCCCCCCCCcccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEe
Q 009628 403 NGPGRNQCLGGRAENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYST 482 (530)
Q Consensus 403 ~~~~~~~~~~g~~~~~~~f~~~sFDrVLlDaPCSglG~rp~l~~~~~t~~~l~~~~~~Qr~ll~~A~~lLkpGG~LVYST 482 (530)
+|+.++||+.-. +-|+| +....| +.|.+|.+.|||||++.
T Consensus 172 -----------------pFdd~s~D~yTi-----afGIR--------------N~th~~-k~l~EAYRVLKpGGrf~--- 211 (296)
T KOG1540|consen 172 -----------------PFDDDSFDAYTI-----AFGIR--------------NVTHIQ-KALREAYRVLKPGGRFS--- 211 (296)
T ss_pred -----------------CCCCCcceeEEE-----eccee--------------cCCCHH-HHHHHHHHhcCCCcEEE---
Confidence 588899999974 55554 333445 88999999999999875
Q ss_pred cCCCCCCCHHHHHHHHHhCC
Q 009628 483 CTINPGENEALVRYALDRYK 502 (530)
Q Consensus 483 CSi~~~ENE~vV~~~L~~~~ 502 (530)
|--.+.+|.+.+.|+-+.|-
T Consensus 212 cLeFskv~~~~l~~fy~~ys 231 (296)
T KOG1540|consen 212 CLEFSKVENEPLKWFYDQYS 231 (296)
T ss_pred EEEccccccHHHHHHHHhhh
Confidence 88888888788899988774
No 55
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.11 E-value=8e-10 Score=106.73 Aligned_cols=63 Identities=32% Similarity=0.352 Sum_probs=56.0
Q ss_pred CCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 260 qpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
++|.+|||+|||+|..+..+|... +.++|+++|.++.++..+++++++.+++++++++.|+.+
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~ 106 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEE 106 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhh
Confidence 358999999999999999998754 468999999999999999999999999889999888643
No 56
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.11 E-value=1.2e-09 Score=106.52 Aligned_cols=67 Identities=19% Similarity=0.371 Sum_probs=59.1
Q ss_pred HHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcch
Q 009628 252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321 (530)
Q Consensus 252 v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da 321 (530)
.....++++++++|||+|||+|..|..++.+. ++|+++|.++..+..+++++++.|+.++++...|+
T Consensus 69 ~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~ 135 (212)
T PRK00312 69 RMTELLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDG 135 (212)
T ss_pred HHHHhcCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCc
Confidence 44557889999999999999999999888864 58999999999999999999999998888888775
No 57
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.09 E-value=1.1e-09 Score=118.00 Aligned_cols=68 Identities=21% Similarity=0.150 Sum_probs=60.4
Q ss_pred HHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhHH
Q 009628 254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (530)
Q Consensus 254 ~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k~ 324 (530)
...++++++++|||+|||+|..+..+|... .+|+|+|.++..++.++++++.+|+++++++..|+.+.
T Consensus 285 ~~~l~~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~ 352 (431)
T TIGR00479 285 LEALELQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETV 352 (431)
T ss_pred HHHhccCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHH
Confidence 344567889999999999999999999753 58999999999999999999999999999999998653
No 58
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.08 E-value=3e-09 Score=102.10 Aligned_cols=62 Identities=23% Similarity=0.360 Sum_probs=54.7
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
+|.+|||+|||+|.-+..+|.+ .+.++|+|+|.|+.++..++++++++|+++|+++..|+..
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~-~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~ 103 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIA-RPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAED 103 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHH-CCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhh
Confidence 4889999999999999888864 5568999999999999999999999999889999888643
No 59
>PLN02244 tocopherol O-methyltransferase
Probab=99.07 E-value=1.2e-09 Score=114.58 Aligned_cols=61 Identities=26% Similarity=0.327 Sum_probs=53.8
Q ss_pred CCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEEcchh
Q 009628 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDAL 322 (530)
Q Consensus 260 qpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~-~i~~~~~Da~ 322 (530)
+++.+|||+|||+|+.+.+++... ..+|+++|.|+..++..++++++.|+. .|++...|+.
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~ 178 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADAL 178 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcc
Confidence 788999999999999999999865 469999999999999999999998875 4888888764
No 60
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.07 E-value=2e-09 Score=105.58 Aligned_cols=54 Identities=24% Similarity=0.287 Sum_probs=45.0
Q ss_pred CCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 259 pqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
.++|.+|||+|||||+.|..+++.++..|.|+|+|+++. .++.+++++++|+..
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~~~v~~i~~D~~~ 102 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPIVGVDFLQGDFRD 102 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCCCCcEEEecCCCC
Confidence 367999999999999999999999887899999999981 134568888888654
No 61
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.06 E-value=1.5e-09 Score=104.72 Aligned_cols=63 Identities=17% Similarity=0.177 Sum_probs=56.7
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhHH
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k~ 324 (530)
...+|||+|||+|..+.++|... +.+.|+|+|++..++..+++++++.|+.+|.++..|+.+.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~ 78 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANEL 78 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHH
Confidence 45699999999999999999865 4679999999999999999999999999999999998764
No 62
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.04 E-value=2.8e-09 Score=113.29 Aligned_cols=74 Identities=15% Similarity=0.047 Sum_probs=58.4
Q ss_pred ccchHHHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC---ceEEEEcch
Q 009628 247 NLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK---CITTYKLDA 321 (530)
Q Consensus 247 d~~S~v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~---~i~~~~~Da 321 (530)
|..+.+....|....+.+|||+|||+|..+..++.. .++.+|+++|.|...++..+++++.++.. .++++..|.
T Consensus 214 D~GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~-~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~ 290 (378)
T PRK15001 214 DIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDK-NPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNA 290 (378)
T ss_pred ChHHHHHHHhCCcccCCeEEEEeccccHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccc
Confidence 455666666666656679999999999999999886 45689999999999999999999887643 455555553
No 63
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.03 E-value=1.3e-09 Score=107.14 Aligned_cols=77 Identities=26% Similarity=0.420 Sum_probs=64.4
Q ss_pred ccchHHH--HHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 247 NLPSIVT--AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 247 d~~S~v~--~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
..|++++ ..+|+++||++|||+++|+|-.|..+|.+.+..|.|+++|+++.-+...+++.+++|+++|++...|...
T Consensus 56 s~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~ 134 (209)
T PF01135_consen 56 SAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSE 134 (209)
T ss_dssp --HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGG
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhh
Confidence 3455554 5678999999999999999999999999999999999999999999999999999999999999998643
No 64
>PRK08317 hypothetical protein; Provisional
Probab=99.02 E-value=4.9e-09 Score=101.75 Aligned_cols=68 Identities=31% Similarity=0.352 Sum_probs=53.0
Q ss_pred HHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcch
Q 009628 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321 (530)
Q Consensus 253 ~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da 321 (530)
....+++.++.+|||+|||+|..+..++..+++.++|+++|.++.++..++++.. ....++.+...|+
T Consensus 11 ~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~-~~~~~~~~~~~d~ 78 (241)
T PRK08317 11 TFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA-GLGPNVEFVRGDA 78 (241)
T ss_pred HHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh-CCCCceEEEeccc
Confidence 3456778899999999999999999999988667899999999999988877622 2223455555553
No 65
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=3.4e-09 Score=114.44 Aligned_cols=78 Identities=27% Similarity=0.287 Sum_probs=66.8
Q ss_pred EEeccchHH------HHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEE
Q 009628 244 FLQNLPSIV------TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTY 317 (530)
Q Consensus 244 ~lQd~~S~v------~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~ 317 (530)
|.|.=+.+. +...++.+++++|||+.||-|+.|.++|. ...+|+|+|+++..++.+++||+.+|++|+++.
T Consensus 270 F~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~---~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~ 346 (432)
T COG2265 270 FFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAK---RVKKVHGVEISPEAVEAAQENAAANGIDNVEFI 346 (432)
T ss_pred ceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcc---cCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEE
Confidence 566655543 34556788999999999999999999994 457899999999999999999999999999999
Q ss_pred EcchhHH
Q 009628 318 KLDALKA 324 (530)
Q Consensus 318 ~~Da~k~ 324 (530)
.+|+.+.
T Consensus 347 ~~~ae~~ 353 (432)
T COG2265 347 AGDAEEF 353 (432)
T ss_pred eCCHHHH
Confidence 9998774
No 66
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.01 E-value=6.1e-09 Score=103.86 Aligned_cols=74 Identities=18% Similarity=0.198 Sum_probs=64.2
Q ss_pred HHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEEcchhHHH
Q 009628 252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALKAV 325 (530)
Q Consensus 252 v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~-~i~~~~~Da~k~v 325 (530)
+...++...++.+|||+|+|.|.-|..||..+.+.|+|+++|+++..++.+++++++.|+. .|+++.+|+.+.+
T Consensus 59 ~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L 133 (234)
T PLN02781 59 FLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSAL 133 (234)
T ss_pred HHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHH
Confidence 3334445566789999999999999999998888899999999999999999999999985 5999999998753
No 67
>PF01472 PUA: PUA domain; InterPro: IPR002478 The PUA (PseudoUridine synthase and Archaeosine transglycosylase) domain was named after the proteins in which it was first found []. PUA is a highly conserved RNA-binding motif found in a wide range of archaeal, bacterial and eukaryotic proteins, including enzymes that catalyse tRNA and rRNA post-transcriptional modifications, proteins involved in ribosome biogenesis and translation, as well as in enzymes involved in proline biosynthesis [, ]. The structures of several PUA-RNA complexes reveal a common RNA recognition surface, but also some versatility in the way in which the motif binds to RNA []. PUA motifs are involved in dyskeratosis congenita and cancer, pointing to links between RNA metabolism and human diseases [].; GO: 0003723 RNA binding; PDB: 1ZE2_A 1ZE1_A 1R3E_A 2AB4_A 3R90_D 2J5T_A 2J5V_B 1Q7H_A 2APO_A 2RFK_A ....
Probab=99.00 E-value=3.4e-10 Score=93.29 Aligned_cols=70 Identities=36% Similarity=0.566 Sum_probs=61.4
Q ss_pred CeEEEcchhHHHHHhccccccCceeeccCCccCCCEEEEEEcccCCcCCCCCcccccccccccCCCCCCCcccCCceEEe
Q 009628 124 KEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIG 203 (530)
Q Consensus 124 k~ViVd~~~~eAVLrGA~v~aPGil~~~~~i~~Gd~VaV~~~~~~~~~~~~w~~~~~rg~~~~~~~~~~~~~~~~gv~Vg 203 (530)
+.|+||+.|++|+++||+||+|||+.++..|++||.|.|+ +.++.+++
T Consensus 1 g~vvVd~~a~~~i~~Ga~L~~~GV~~~~~~f~~gd~V~i~--------------------------------~~~g~~ia 48 (74)
T PF01472_consen 1 GRVVVDDGAVEAILNGASLFAPGVVEVDGDFRKGDEVAIV--------------------------------DEDGEVIA 48 (74)
T ss_dssp EEEEE-HHHHHHHHTTSEEEGGGEEEEETT--TTSEEEEE--------------------------------ETTSSEEE
T ss_pred CEEEECccHHHHHHcCCCcchHHhEECCCCcCCCCEEEEE--------------------------------cCCCeEEE
Confidence 3699999999999999999999999999999999999999 33578999
Q ss_pred ecccccCcccccccCCceeeec
Q 009628 204 QGTAMMSRAGIFRASEGIAVDM 225 (530)
Q Consensus 204 ~Gia~mSreelf~~p~GlaV~~ 225 (530)
.|++.|+.+++.+..+|.+++.
T Consensus 49 ~G~a~~ss~ei~~~~~g~~~~~ 70 (74)
T PF01472_consen 49 VGRANMSSEEIKKMKKGKAVKI 70 (74)
T ss_dssp EEEESSTHHHHHHHSSSEEEEE
T ss_pred EEEEecCHHHHHHHcCCcEehh
Confidence 9999999999999888888765
No 68
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.99 E-value=4.7e-09 Score=111.59 Aligned_cols=68 Identities=10% Similarity=0.102 Sum_probs=60.6
Q ss_pred HhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 255 ~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
..+.+..+..+||+|||.|..+.++|... +...++|+|++...+..+.+++++.|+++|.++..|+..
T Consensus 116 ~~~~~~~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ 183 (390)
T PRK14121 116 DFISKNQEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARL 183 (390)
T ss_pred HHhcCCCCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHH
Confidence 34455678899999999999999999975 568999999999999999999999999999999999864
No 69
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.99 E-value=5.5e-09 Score=109.79 Aligned_cols=72 Identities=17% Similarity=0.207 Sum_probs=56.4
Q ss_pred ccchHHHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcc
Q 009628 247 NLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320 (530)
Q Consensus 247 d~~S~v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~D 320 (530)
|..|.+....|.+....+|||+|||.|..+..++... +..+|+++|.|...+...++++++.++.. +++..|
T Consensus 182 D~gt~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~n~l~~-~~~~~D 253 (342)
T PRK09489 182 DVGSQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAANGLEG-EVFASN 253 (342)
T ss_pred CHHHHHHHHhccccCCCeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCC-EEEEcc
Confidence 4456666666665556699999999999999998863 45789999999999999999999888753 334333
No 70
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=6.3e-09 Score=101.72 Aligned_cols=80 Identities=19% Similarity=0.304 Sum_probs=68.5
Q ss_pred cceEEEeccchHHHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEc
Q 009628 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKL 319 (530)
Q Consensus 240 ~G~i~lQd~~S~v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~ 319 (530)
.|....|-..-.....+|+++||++||+++||+|--|..||++. |+|+++|+.+.-+...+++.+.+|+.+|.+.+.
T Consensus 51 ~gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~g 127 (209)
T COG2518 51 CGQTISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGYENVTVRHG 127 (209)
T ss_pred CCceecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEEC
Confidence 45555554444445678999999999999999999999999986 499999999999999999999999999999988
Q ss_pred chh
Q 009628 320 DAL 322 (530)
Q Consensus 320 Da~ 322 (530)
|..
T Consensus 128 DG~ 130 (209)
T COG2518 128 DGS 130 (209)
T ss_pred Ccc
Confidence 853
No 71
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.97 E-value=1.4e-09 Score=106.10 Aligned_cols=64 Identities=27% Similarity=0.216 Sum_probs=51.1
Q ss_pred CCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-eEEEEcchhH
Q 009628 259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALK 323 (530)
Q Consensus 259 pqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~-i~~~~~Da~k 323 (530)
.++|+.||||+||-|..+..+|.. .....|+|+|+++..++-++++++.+++.+ |.++.+|+..
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~-~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~ 163 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKH-GKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDARE 163 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHH-T-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG
T ss_pred CCcceEEEEccCCccHHHHHHhhh-cCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHH
Confidence 578999999999999999999985 445689999999999999999999999987 8899999765
No 72
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.97 E-value=7.7e-09 Score=107.85 Aligned_cols=69 Identities=17% Similarity=0.265 Sum_probs=62.1
Q ss_pred HhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 255 ~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
..+++++|++|||+|||+|..+..+|.+.+.+|.|+++|+++..++.++++++++|++++.++..|+.+
T Consensus 74 ~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~ 142 (322)
T PRK13943 74 EWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYY 142 (322)
T ss_pred HhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhh
Confidence 456789999999999999999999999887778999999999999999999999999888888888643
No 73
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.96 E-value=1.5e-08 Score=108.52 Aligned_cols=71 Identities=18% Similarity=0.150 Sum_probs=57.3
Q ss_pred hHHHHHhcC-CCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchh
Q 009628 250 SIVTAHALD-PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (530)
Q Consensus 250 S~v~~~~Ld-pqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (530)
..++..+++ .+++.+|||+|||+|..+..++... +..+|+|+|.|+..++.+++++++++. ++++++.|.+
T Consensus 239 E~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa~~~g~-rV~fi~gDl~ 310 (423)
T PRK14966 239 EHLVEAVLARLPENGRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNAADLGA-RVEFAHGSWF 310 (423)
T ss_pred HHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEcchh
Confidence 344444443 4567899999999999998888753 457999999999999999999999886 6888888764
No 74
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.96 E-value=1.1e-08 Score=99.21 Aligned_cols=71 Identities=18% Similarity=0.208 Sum_probs=60.1
Q ss_pred cchHHHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcch
Q 009628 248 LPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321 (530)
Q Consensus 248 ~~S~v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da 321 (530)
.++-.....+...++.+|||+|||+|.-+.++|+. ...|+|+|.|+..++.++++++..+++++++...|.
T Consensus 17 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~ 87 (197)
T PRK11207 17 RTHSEVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDL 87 (197)
T ss_pred CChHHHHHhcccCCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecCh
Confidence 45556667777778899999999999999999873 358999999999999999999998888887777774
No 75
>TIGR00451 unchar_dom_2 uncharacterized domain 2. This uncharacterized domain is found a number of enzymes and uncharacterized proteins, often at the C-terminus. It is found in some but not all members of a family of related tRNA-guanine transglycosylases (tgt), which exchange a guanine base for some modified base without breaking the phosphodiester backbone of the tRNA. It is also found in rRNA pseudouridine synthase, another enzyme of RNA base modification not otherwise homologous to tgt. It is found, again at the C-terminus, in two putative glutamate 5-kinases. It is also found in a family of small, uncharacterized archaeal proteins consisting mostly of this domain.
Probab=98.95 E-value=6.3e-10 Score=97.97 Aligned_cols=88 Identities=25% Similarity=0.300 Sum_probs=73.9
Q ss_pred eEEEeCCCCccccCCCCCCCCCCeEEEcchhHHHHHhccccccCceeeccCCccCCCEEEEEEcccCCcCCCCCcccccc
Q 009628 102 VVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITR 181 (530)
Q Consensus 102 ~l~i~~~gp~~~~~~~~~~~~~k~ViVd~~~~eAVLrGA~v~aPGil~~~~~i~~Gd~VaV~~~~~~~~~~~~w~~~~~r 181 (530)
.++....|++.+.. ..+.|+||.+|++++++||+||+|||++++.++++||.|+|+.
T Consensus 15 ~~~ptl~~~~~~~~------~~~~v~vd~~a~~~l~~Ga~L~~pGV~~~~~~~~~gd~V~I~~----------------- 71 (107)
T TIGR00451 15 KVIPSLKGALKLME------DKKIVVVDNGAVKFLKNGADVMRPGIVDADEDIKEGDDVVVVD----------------- 71 (107)
T ss_pred eEcccHHHHHhChh------hCCEEEEChhHHHHHHCCccccCCeeEeCCCCcCCCCEEEEEE-----------------
Confidence 34444566655432 4799999999999999999999999999999999999999991
Q ss_pred cccccCCCCCCCcccCCceEEeecccccCcccccccCCceeeecC
Q 009628 182 GTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMH 226 (530)
Q Consensus 182 g~~~~~~~~~~~~~~~~gv~Vg~Gia~mSreelf~~p~GlaV~~~ 226 (530)
+.++.+++.|++.++.+++....+|++++..
T Consensus 72 --------------~~~~~~iavG~a~~~s~e~~~~~~G~~v~~~ 102 (107)
T TIGR00451 72 --------------ENKDRPLAVGIALMSGEEMKEMDKGKAVKNI 102 (107)
T ss_pred --------------CCCCeEEEEEEEecCHHHHHhcCCCeEEEEE
Confidence 2236899999999999999988999998864
No 76
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.95 E-value=1.5e-08 Score=101.44 Aligned_cols=64 Identities=16% Similarity=0.233 Sum_probs=54.5
Q ss_pred CCCCCeEEeeccCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEEcchh
Q 009628 259 PQKGERILDMCAAPGGKTTAIASLL-RDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDAL 322 (530)
Q Consensus 259 pqpGe~VLDmCAAPGgKT~~iA~lm-~~~G~VvA~D~s~~kv~~i~~~a~~~gl~-~i~~~~~Da~ 322 (530)
++++.+|||+|||+|.-+..++..+ .+.++|+++|.|+.+++..++++++.++. +|+++..|+.
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~ 119 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIR 119 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChh
Confidence 3578999999999999998888865 46689999999999999999999988875 5777777753
No 77
>PLN02476 O-methyltransferase
Probab=98.93 E-value=1.9e-08 Score=102.78 Aligned_cols=76 Identities=18% Similarity=0.205 Sum_probs=66.6
Q ss_pred hHHHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEEcchhHHH
Q 009628 250 SIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALKAV 325 (530)
Q Consensus 250 S~v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~-~i~~~~~Da~k~v 325 (530)
..+...++...+..+|||+|++.|.-|+++|..|.+.|.|+++|+++.+.+.++++.++.|+. .|+++.+|+.+.+
T Consensus 107 g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L 183 (278)
T PLN02476 107 AQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESL 183 (278)
T ss_pred HHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHH
Confidence 344455556667889999999999999999999988899999999999999999999999996 6999999998754
No 78
>PRK14560 putative RNA-binding protein; Provisional
Probab=98.93 E-value=1.2e-09 Score=103.02 Aligned_cols=74 Identities=27% Similarity=0.444 Sum_probs=66.6
Q ss_pred CCCeEEEcchhHHHHHhccccccCceeeccCCccCCCEEEEEEcccCCcCCCCCcccccccccccCCCCCCCcccCCceE
Q 009628 122 PPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLY 201 (530)
Q Consensus 122 ~~k~ViVd~~~~eAVLrGA~v~aPGil~~~~~i~~Gd~VaV~~~~~~~~~~~~w~~~~~rg~~~~~~~~~~~~~~~~gv~ 201 (530)
..+.|+||..|++++++||+||+|||+.++.++++||.|+|+. +.++.+
T Consensus 75 ~~~~v~Vd~~a~~~i~~Ga~lm~pGV~~~~~~~~~Gd~V~I~~-------------------------------~~~~~~ 123 (160)
T PRK14560 75 EKRRVVVDAGAVKFVSNGADVMAPGIVEADEDIKEGDIVFVVE-------------------------------ETHGKP 123 (160)
T ss_pred cCCEEEEeccHHHHHHCCCceecCeeeeCCCCCCCCCEEEEEE-------------------------------CCCCeE
Confidence 5689999999999999999999999999999999999999992 223688
Q ss_pred EeecccccCcccccccCCceeeecC
Q 009628 202 IGQGTAMMSRAGIFRASEGIAVDMH 226 (530)
Q Consensus 202 Vg~Gia~mSreelf~~p~GlaV~~~ 226 (530)
+|+|++.|+.+++....+|.+|+.-
T Consensus 124 vavG~~~~s~~ei~~~~kG~~v~~~ 148 (160)
T PRK14560 124 LAVGRALMDGDEMVEEKKGKAVKNI 148 (160)
T ss_pred EEEEEEeeCHHHHhhcCCceEEEEE
Confidence 9999999999999988899998863
No 79
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.92 E-value=7.8e-09 Score=110.16 Aligned_cols=71 Identities=24% Similarity=0.196 Sum_probs=58.6
Q ss_pred HHHHhcCCC-CCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 252 VTAHALDPQ-KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 252 v~~~~Ldpq-pGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
+++.++..+ ++++|||++||.|..+..+|...+ ..+|+++|+++..++.+++|++.+++++++++..|+..
T Consensus 47 ~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~ 118 (382)
T PRK04338 47 LVLRAFGPKLPRESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANA 118 (382)
T ss_pred HHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHH
Confidence 334444433 568999999999999999987654 35899999999999999999999999888888888755
No 80
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.92 E-value=1.3e-08 Score=108.16 Aligned_cols=65 Identities=17% Similarity=0.216 Sum_probs=56.8
Q ss_pred cCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhHH
Q 009628 257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (530)
Q Consensus 257 LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k~ 324 (530)
++..++.+|||++||.|..+..+|.. ..+|+|+|+++..++.++++++.+|+++++++..|+.+.
T Consensus 229 l~~~~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~ 293 (374)
T TIGR02085 229 VREIPVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKF 293 (374)
T ss_pred HHhcCCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHH
Confidence 34456789999999999999988852 368999999999999999999999998999999998653
No 81
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.92 E-value=5.6e-09 Score=100.55 Aligned_cols=63 Identities=32% Similarity=0.425 Sum_probs=51.9
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-eEEEEcchhHHH
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALKAV 325 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~-i~~~~~Da~k~v 325 (530)
+|.+|||+|||+|.-+...++ ++..+|+.+|.++..+..+++|++.+++.. +++++.|+.+.+
T Consensus 42 ~g~~vLDLFaGSGalGlEALS--RGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l 105 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALS--RGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFL 105 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHH--TT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHH
T ss_pred CCCeEEEcCCccCccHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHH
Confidence 689999999999999877544 666799999999999999999999999987 999999988765
No 82
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=9.8e-09 Score=100.18 Aligned_cols=137 Identities=23% Similarity=0.301 Sum_probs=95.2
Q ss_pred CCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhHHHhhcCCCCCCCCccC
Q 009628 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCN 339 (530)
Q Consensus 260 qpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k~v~~~~~~~~~~~~~~ 339 (530)
.+|.+|+|+||||||++..++..++.++.|+|+|+.+-+. ..+|.++++|++..-
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~-----------~~~V~~iq~d~~~~~-------------- 98 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP-----------IPGVIFLQGDITDED-------------- 98 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc-----------CCCceEEeeeccCcc--------------
Confidence 5799999999999999999999999999999999998652 356888999876410
Q ss_pred CCCCccccccccccccccccccchhccCCCCCCcccccccccccccccccchhhhhhhhhhccCCCCCCccCCCcccCCC
Q 009628 340 SKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKVSNEKGVERTYVSKADTRKNMRRMRNGPGRNQCLGGRAENSK 419 (530)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~ 419 (530)
+..+++.
T Consensus 99 --------------------------------------------------~~~~l~~----------------------- 105 (205)
T COG0293 99 --------------------------------------------------TLEKLLE----------------------- 105 (205)
T ss_pred --------------------------------------------------HHHHHHH-----------------------
Confidence 0011111
Q ss_pred CCCCCCCCeEEEcCCCCCCCCcccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCCCHHHHHHHHH
Q 009628 420 GFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEALVRYALD 499 (530)
Q Consensus 420 ~f~~~sFDrVLlDaPCSglG~rp~l~~~~~t~~~l~~~~~~Qr~ll~~A~~lLkpGG~LVYSTCSi~~~ENE~vV~~~L~ 499 (530)
.+....+|.|+.|+----.|.+ +.+..+.. .+-...++-|...|+|||.+|.. ...+++++...+.++
T Consensus 106 ~l~~~~~DvV~sD~ap~~~g~~--------~~Dh~r~~-~L~~~a~~~a~~vL~~~G~fv~K---~fqg~~~~~~l~~~~ 173 (205)
T COG0293 106 ALGGAPVDVVLSDMAPNTSGNR--------SVDHARSM-YLCELALEFALEVLKPGGSFVAK---VFQGEDFEDLLKALR 173 (205)
T ss_pred HcCCCCcceEEecCCCCcCCCc--------cccHHHHH-HHHHHHHHHHHHeeCCCCeEEEE---EEeCCCHHHHHHHHH
Confidence 1122347999999765555542 22332222 22336788899999999999954 677888877777776
Q ss_pred -hCCCcee
Q 009628 500 -RYKFLSL 506 (530)
Q Consensus 500 -~~~~~~l 506 (530)
.|..+..
T Consensus 174 ~~F~~v~~ 181 (205)
T COG0293 174 RLFRKVKI 181 (205)
T ss_pred HhhceeEE
Confidence 4444443
No 83
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.91 E-value=1e-08 Score=103.83 Aligned_cols=67 Identities=16% Similarity=0.136 Sum_probs=52.1
Q ss_pred HHHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcch
Q 009628 251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321 (530)
Q Consensus 251 ~v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da 321 (530)
..+...+.+.++.+|||+|||+|+.+..+|... .++|+++|.|+..+..+++++.. ...|.+...|+
T Consensus 42 ~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~--~~~i~~~~~D~ 108 (263)
T PTZ00098 42 TKILSDIELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD--KNKIEFEANDI 108 (263)
T ss_pred HHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc--CCceEEEECCc
Confidence 344456788999999999999999999888753 46999999999999888776543 23466666664
No 84
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=4.8e-08 Score=98.33 Aligned_cols=77 Identities=17% Similarity=0.207 Sum_probs=66.3
Q ss_pred EEeccchHHHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEEcc
Q 009628 244 FLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLD 320 (530)
Q Consensus 244 ~lQd~~S~v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~-~i~~~~~D 320 (530)
.+--....++.+.|+..||.+||..+.|+|+.+.+||...+++|.++.+|..+.|....++-.++.|+. +++++.-|
T Consensus 88 I~Yt~Dia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrD 165 (314)
T KOG2915|consen 88 ILYTPDIAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRD 165 (314)
T ss_pred EEecccHHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEee
Confidence 333334456778999999999999999999999999999999999999999999999999999999974 46666655
No 85
>COG2016 Predicted RNA-binding protein (contains PUA domain) [Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=1.7e-09 Score=101.06 Aligned_cols=73 Identities=30% Similarity=0.457 Sum_probs=66.4
Q ss_pred CCeEEEcchhHHHHHhccccccCceeeccCCccCCCEEEEEEcccCCcCCCCCcccccccccccCCCCCCCcccCCceEE
Q 009628 123 PKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYI 202 (530)
Q Consensus 123 ~k~ViVd~~~~eAVLrGA~v~aPGil~~~~~i~~Gd~VaV~~~~~~~~~~~~w~~~~~rg~~~~~~~~~~~~~~~~gv~V 202 (530)
...|+||++|...|++|||||+|||++++..|++||.|.|. .+.++.++
T Consensus 76 ~~~V~VD~GAvk~v~nGADvM~PGIv~~~~~ik~Gd~VvV~-------------------------------~e~~~~pl 124 (161)
T COG2016 76 KYVVVVDEGAVKFVLNGADVMAPGIVSADGEIKEGDIVVVV-------------------------------DEKKGRPL 124 (161)
T ss_pred ccEEEEcCccHhhhcCCCceeccceeecCCCccCCCEEEEE-------------------------------EcCCCCee
Confidence 34899999999999999999999999999999999999998 24567899
Q ss_pred eecccccCcccccccCCceeeecC
Q 009628 203 GQGTAMMSRAGIFRASEGIAVDMH 226 (530)
Q Consensus 203 g~Gia~mSreelf~~p~GlaV~~~ 226 (530)
++|+++|+..+|....+|.+++..
T Consensus 125 AVG~alm~~~em~~~~kGkav~~i 148 (161)
T COG2016 125 AVGIALMSGKEMEEKKKGKAVKNI 148 (161)
T ss_pred EEEeeccCHHHHhhhcCCeEEEEE
Confidence 999999999999999999998753
No 86
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.91 E-value=2.2e-08 Score=110.41 Aligned_cols=61 Identities=18% Similarity=0.160 Sum_probs=52.4
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEEcchh
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDAL 322 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~-~i~~~~~Da~ 322 (530)
++.+|||+|||+|..+..+|..+. ..+|+|+|+|+..+..++++++.+|+. .+.++..|.+
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p-~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~ 199 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELP-NANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWF 199 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchh
Confidence 457999999999999999987653 579999999999999999999999875 4777777754
No 87
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.90 E-value=6.2e-09 Score=108.42 Aligned_cols=125 Identities=21% Similarity=0.325 Sum_probs=98.2
Q ss_pred hHHHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEc-chhHHHhhc
Q 009628 250 SIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKL-DALKAVRRK 328 (530)
Q Consensus 250 S~v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~-Da~k~v~~~ 328 (530)
|.+.+.+..+++|+.|||=.||+||..... .||+ ..+++.|++..++..++.|.+.+|+....+++. |+.+.
T Consensus 186 AR~mVNLa~v~~G~~vlDPFcGTGgiLiEa-gl~G--~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~l---- 258 (347)
T COG1041 186 ARAMVNLARVKRGELVLDPFCGTGGILIEA-GLMG--ARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNL---- 258 (347)
T ss_pred HHHHHHHhccccCCEeecCcCCccHHHHhh-hhcC--ceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccC----
Confidence 556667778999999999999999988765 4563 689999999999999999999999887766666 76541
Q ss_pred CCCCCCCCccCCCCCccccccccccccccccccchhccCCCCCCcccccccccccccccccchhhhhhhhhhccCCCCCC
Q 009628 329 NESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKVSNEKGVERTYVSKADTRKNMRRMRNGPGRN 408 (530)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 408 (530)
T Consensus 259 -------------------------------------------------------------------------------- 258 (347)
T COG1041 259 -------------------------------------------------------------------------------- 258 (347)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCcccCCCCCCCCCCCeEEEcCCCCCCCCcccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEec
Q 009628 409 QCLGGRAENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTC 483 (530)
Q Consensus 409 ~~~~g~~~~~~~f~~~sFDrVLlDaPCSglG~rp~l~~~~~t~~~l~~~~~~Qr~ll~~A~~lLkpGG~LVYSTC 483 (530)
+|..++||.|.+|||. |.+-.. ....+..+-+++|+.+.+.||+||++||.+-
T Consensus 259 -----------pl~~~~vdaIatDPPY---Grst~~--------~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 259 -----------PLRDNSVDAIATDPPY---GRSTKI--------KGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred -----------CCCCCccceEEecCCC---Cccccc--------ccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 3455679999999998 322111 1111455677999999999999999999876
No 88
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=2.4e-08 Score=102.30 Aligned_cols=58 Identities=29% Similarity=0.333 Sum_probs=48.8
Q ss_pred eEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchh
Q 009628 264 RILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (530)
Q Consensus 264 ~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (530)
+|||||+|+|--++.+|... ...+|+|+|+|+..++.+++||+++|+.++..+..|.+
T Consensus 113 ~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf 170 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEG-PDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLF 170 (280)
T ss_pred cEEEecCChHHHHHHHHhhC-cCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecc
Confidence 79999999999999888754 34799999999999999999999999866555555543
No 89
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.89 E-value=1.4e-09 Score=90.34 Aligned_cols=50 Identities=22% Similarity=0.264 Sum_probs=37.9
Q ss_pred EeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcc
Q 009628 266 LDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320 (530)
Q Consensus 266 LDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~D 320 (530)
||++||+|..+..++.. ...+|+++|.++..+..++++.+..+ +.+...|
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~~---~~~~~~d 50 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNEG---VSFRQGD 50 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTST---EEEEESB
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccccC---chheeeh
Confidence 89999999999999986 56899999999999888877665443 3344444
No 90
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.89 E-value=6.6e-09 Score=106.02 Aligned_cols=68 Identities=21% Similarity=0.232 Sum_probs=53.1
Q ss_pred HHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-eEEEEcch
Q 009628 252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDA 321 (530)
Q Consensus 252 v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~-i~~~~~Da 321 (530)
.....++++||++|||++||-|+.+.++|+.. ...|+++..|++..+.+++.+++.|+.+ +++...|.
T Consensus 53 ~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~ 121 (273)
T PF02353_consen 53 LLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDY 121 (273)
T ss_dssp HHHTTTT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-G
T ss_pred HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeec
Confidence 45566789999999999999999999999975 3699999999999999999999999975 77777664
No 91
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.89 E-value=2.9e-08 Score=99.29 Aligned_cols=71 Identities=11% Similarity=0.143 Sum_probs=55.3
Q ss_pred EeccchHHHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcch
Q 009628 245 LQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321 (530)
Q Consensus 245 lQd~~S~v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da 321 (530)
.|..++......+.+.++.+|||+|||+|..|..++... +.++|+++|.|+.++..++++. .++.++..|+
T Consensus 15 ~~~~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~-----~~~~~~~~d~ 85 (258)
T PRK01683 15 ERTRPARDLLARVPLENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRL-----PDCQFVEADI 85 (258)
T ss_pred HhhcHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhC-----CCCeEEECch
Confidence 455566666677778899999999999999999999875 4579999999999887776542 3455665554
No 92
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.87 E-value=4.1e-08 Score=94.08 Aligned_cols=72 Identities=15% Similarity=0.133 Sum_probs=52.7
Q ss_pred HHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCc--------EEEEEeCCHHHHHHHHHHHHHhCCCc-eEEEEcchh
Q 009628 252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEG--------EVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDAL 322 (530)
Q Consensus 252 v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G--------~VvA~D~s~~kv~~i~~~a~~~gl~~-i~~~~~Da~ 322 (530)
..+.+.++++|+.|||-+||+|+..+..|.+..+.- .+++.|++++.+...++|++..|+.. |.+.+.|+.
T Consensus 19 ~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~ 98 (179)
T PF01170_consen 19 ALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDAR 98 (179)
T ss_dssp HHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GG
T ss_pred HHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchh
Confidence 344566789999999999999998887776554433 39999999999999999999999865 788888876
Q ss_pred H
Q 009628 323 K 323 (530)
Q Consensus 323 k 323 (530)
+
T Consensus 99 ~ 99 (179)
T PF01170_consen 99 E 99 (179)
T ss_dssp G
T ss_pred h
Confidence 5
No 93
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.87 E-value=2e-08 Score=104.83 Aligned_cols=62 Identities=19% Similarity=0.177 Sum_probs=50.5
Q ss_pred CCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CceEEEEcchh
Q 009628 258 DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDAL 322 (530)
Q Consensus 258 dpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl-~~i~~~~~Da~ 322 (530)
.+.+|.+|||+|||.|..+..+|.. .+.|+++|.++.++..+++.++..+. .+|++++.|+.
T Consensus 128 ~~~~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae 190 (322)
T PLN02396 128 KPFEGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAE 190 (322)
T ss_pred cCCCCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHH
Confidence 4568899999999999999888862 46899999999999999887766554 45777777754
No 94
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.87 E-value=2.6e-08 Score=99.91 Aligned_cols=61 Identities=20% Similarity=0.250 Sum_probs=52.7
Q ss_pred CCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEEcchhH
Q 009628 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALK 323 (530)
Q Consensus 260 qpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~-~i~~~~~Da~k 323 (530)
+++.+|||+|||+|..+..+|.. ..+|+++|.|+.++..+++++++.|+. +++++..|+..
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~ 104 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQD 104 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHH
Confidence 45789999999999999999874 368999999999999999999999874 58888888654
No 95
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.85 E-value=2.7e-08 Score=99.71 Aligned_cols=63 Identities=17% Similarity=0.221 Sum_probs=48.7
Q ss_pred HHHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcch
Q 009628 251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321 (530)
Q Consensus 251 ~v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da 321 (530)
.-....+.+.++.+|||++||+|..+..++... +.++|+++|.|+.++..+++ . ++.+...|+
T Consensus 19 ~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~----~---~~~~~~~d~ 81 (255)
T PRK14103 19 YDLLARVGAERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARE----R---GVDARTGDV 81 (255)
T ss_pred HHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHh----c---CCcEEEcCh
Confidence 334455677889999999999999999999875 45799999999998876543 2 355666664
No 96
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.85 E-value=1.8e-08 Score=106.38 Aligned_cols=67 Identities=24% Similarity=0.278 Sum_probs=52.5
Q ss_pred HHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 253 ~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
+..+++++++ .|||++||.|..|..+|.. -.+|+|+|.++..+..+++||+.+|+++++++.+++.+
T Consensus 189 ~~~~l~~~~~-~vlDlycG~G~fsl~la~~---~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~ 255 (352)
T PF05958_consen 189 ALEWLDLSKG-DVLDLYCGVGTFSLPLAKK---AKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAED 255 (352)
T ss_dssp HHHHCTT-TT-EEEEES-TTTCCHHHHHCC---SSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHH
T ss_pred HHHHhhcCCC-cEEEEeecCCHHHHHHHhh---CCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccc
Confidence 3456677776 8999999999999999874 36899999999999999999999999999999988754
No 97
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.84 E-value=5.6e-08 Score=94.88 Aligned_cols=63 Identities=16% Similarity=0.067 Sum_probs=54.2
Q ss_pred CCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhHH
Q 009628 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (530)
Q Consensus 260 qpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k~ 324 (530)
.++.+|||+|||.|..+..++.. ...+|+++|+++..++.++++++.+|+.+++++..|+.+.
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr--~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~ 114 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSR--YAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSF 114 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHH
Confidence 56889999999999999754432 3469999999999999999999999998899999998653
No 98
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.82 E-value=1.7e-08 Score=100.67 Aligned_cols=58 Identities=21% Similarity=0.164 Sum_probs=46.3
Q ss_pred EeccchHHHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHH
Q 009628 245 LQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKL 305 (530)
Q Consensus 245 lQd~~S~v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~ 305 (530)
+|..........+...++.+|||+|||+|..+.+++.. ...|+++|.|+.+++..+++
T Consensus 26 ~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~ 83 (251)
T PRK10258 26 LQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQK 83 (251)
T ss_pred HHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhh
Confidence 56666666666777677889999999999998888763 36899999999998766554
No 99
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.82 E-value=6.9e-08 Score=99.02 Aligned_cols=53 Identities=21% Similarity=0.178 Sum_probs=45.3
Q ss_pred CCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 009628 259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC 313 (530)
Q Consensus 259 pqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~ 313 (530)
.++|.+|||+|||+|..+..++.+ +.++|+|+|+|+.++..++++++.+++..
T Consensus 157 ~~~g~~VLDvGcGsG~lai~aa~~--g~~~V~avDid~~al~~a~~n~~~n~~~~ 209 (288)
T TIGR00406 157 DLKDKNVIDVGCGSGILSIAALKL--GAAKVVGIDIDPLAVESARKNAELNQVSD 209 (288)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHcCCCc
Confidence 468899999999999988777653 34699999999999999999999887753
No 100
>TIGR03684 arCOG00985 arCOG04150 universal archaeal PUA-domain protein. This universal archaeal protein contains a domain possibly associated with RNA binding (pfam01472, TIGR00451).
Probab=98.81 E-value=3.5e-09 Score=98.79 Aligned_cols=74 Identities=23% Similarity=0.407 Sum_probs=67.0
Q ss_pred CCCeEEEcchhHHHHHhccccccCceeeccCCccCCCEEEEEEcccCCcCCCCCcccccccccccCCCCCCCcccCCceE
Q 009628 122 PPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLY 201 (530)
Q Consensus 122 ~~k~ViVd~~~~eAVLrGA~v~aPGil~~~~~i~~Gd~VaV~~~~~~~~~~~~w~~~~~rg~~~~~~~~~~~~~~~~gv~ 201 (530)
..+.|+||..|++++++||+||+|||+.++.++++||.|+|+. +.++.+
T Consensus 68 ~~~~v~Vd~~a~~~l~~Ga~lm~pGV~~~~~~~~~Gd~V~I~~-------------------------------~~~~~~ 116 (150)
T TIGR03684 68 DKNRVVVDEGAVKFIINGADIMAPGIVSADPSIKEGDIVFVVD-------------------------------ETHRKP 116 (150)
T ss_pred cCCEEEECccHHHHHhcCcccccCceecCCCCCCCCCEEEEEE-------------------------------CCCCeE
Confidence 5699999999999999999999999999999999999999992 223789
Q ss_pred EeecccccCcccccccCCceeeecC
Q 009628 202 IGQGTAMMSRAGIFRASEGIAVDMH 226 (530)
Q Consensus 202 Vg~Gia~mSreelf~~p~GlaV~~~ 226 (530)
+++|++.|+.+++....+|.+|++.
T Consensus 117 vavG~a~~ss~ei~~~~kG~av~~~ 141 (150)
T TIGR03684 117 LAVGIALMDAEEMEEEKKGKAVKNI 141 (150)
T ss_pred EEEEEEeeCHHHHhhcCCCeEEEEE
Confidence 9999999999999988899998864
No 101
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.80 E-value=5.3e-08 Score=106.04 Aligned_cols=66 Identities=23% Similarity=0.217 Sum_probs=51.4
Q ss_pred HHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcch
Q 009628 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321 (530)
Q Consensus 253 ~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da 321 (530)
....+.++++.+|||+|||+|+.+..+|... ..+|+|+|+|+..+...++++...+ ..+++...|+
T Consensus 258 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~-~~v~~~~~d~ 323 (475)
T PLN02336 258 FVDKLDLKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRK-CSVEFEVADC 323 (475)
T ss_pred HHHhcCCCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCC-CceEEEEcCc
Confidence 4445667889999999999999999898865 4689999999999988887765332 2366666664
No 102
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.80 E-value=4.6e-08 Score=103.54 Aligned_cols=61 Identities=21% Similarity=0.238 Sum_probs=54.9
Q ss_pred CCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhHHH
Q 009628 262 GERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAV 325 (530)
Q Consensus 262 Ge~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k~v 325 (530)
+.+|||+|||.|..|..+|... .+|+|+|.++..++.+++|++.+|+++++++..|+.+.+
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l 267 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFT 267 (362)
T ss_pred CCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHH
Confidence 3579999999999999888743 589999999999999999999999999999999997754
No 103
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.80 E-value=7.5e-08 Score=78.98 Aligned_cols=58 Identities=29% Similarity=0.263 Sum_probs=45.0
Q ss_pred eEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 264 RILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 264 ~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
+|||+|||+|..+..++. ....+++++|.+...+..+++..+..+...++++..|..+
T Consensus 1 ~ildig~G~G~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (107)
T cd02440 1 RVLDLGCGTGALALALAS--GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEE 58 (107)
T ss_pred CeEEEcCCccHHHHHHhc--CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhh
Confidence 589999999999888877 4567999999999998888765544555567777766543
No 104
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.79 E-value=5.4e-08 Score=94.95 Aligned_cols=71 Identities=25% Similarity=0.337 Sum_probs=56.4
Q ss_pred HHHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEEcch
Q 009628 251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDA 321 (530)
Q Consensus 251 ~v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~-~i~~~~~Da 321 (530)
......++++++.+|||+|||+|..+..++.......+++++|.++..+..++++++..++. .+.++..|+
T Consensus 41 ~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~ 112 (239)
T PRK00216 41 RKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDA 112 (239)
T ss_pred HHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEeccc
Confidence 34555677788999999999999999999988754689999999999999998887765543 356665554
No 105
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.79 E-value=9.2e-08 Score=92.23 Aligned_cols=63 Identities=29% Similarity=0.431 Sum_probs=55.1
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-eEEEEcchhHHH
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALKAV 325 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~-i~~~~~Da~k~v 325 (530)
.|.++||++||+|+-+...++ ++...++.+|.+...+..|++|++.+++.. .+.++.|+...+
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlS--RGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L 106 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALS--RGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRAL 106 (187)
T ss_pred CCCEEEEecCCccHhHHHHHh--CCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHH
Confidence 589999999999998877665 667899999999999999999999999654 889999998653
No 106
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.78 E-value=6.7e-08 Score=102.77 Aligned_cols=62 Identities=23% Similarity=0.150 Sum_probs=55.4
Q ss_pred CeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhHH
Q 009628 263 ERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (530)
Q Consensus 263 e~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k~ 324 (530)
-+|||++||+|.-++.++....+..+|+++|+++..++.+++|++.+++.++++++.|+.+.
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~ 107 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANV 107 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHH
Confidence 48999999999999998876544568999999999999999999999998899999998765
No 107
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.77 E-value=2.7e-08 Score=98.93 Aligned_cols=50 Identities=26% Similarity=0.329 Sum_probs=44.8
Q ss_pred CCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC
Q 009628 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK 312 (530)
Q Consensus 260 qpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~ 312 (530)
-+|.+|||++||-|..+..+|++ ...|+|+|.++..++..+..|.+.|+.
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e~gv~ 107 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLHALESGVN 107 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhhcccc
Confidence 47999999999999999999884 379999999999999999999988875
No 108
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.77 E-value=1.4e-07 Score=91.23 Aligned_cols=67 Identities=16% Similarity=0.182 Sum_probs=53.5
Q ss_pred hHHHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcc
Q 009628 250 SIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320 (530)
Q Consensus 250 S~v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~D 320 (530)
+......+.+.++.+|||++||.|.-+..+|.. ...|+|+|.|+..+..++++++..|++ +.....|
T Consensus 19 ~~~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~~~-v~~~~~d 85 (195)
T TIGR00477 19 HSAVREAVKTVAPCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARENLP-LRTDAYD 85 (195)
T ss_pred hHHHHHHhccCCCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhCCC-ceeEecc
Confidence 334445666666789999999999999999873 369999999999999999999888875 5555554
No 109
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.75 E-value=1.5e-08 Score=87.15 Aligned_cols=58 Identities=28% Similarity=0.256 Sum_probs=46.9
Q ss_pred EEeeccCCChHHHHHHHHc--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 265 ILDMCAAPGGKTTAIASLL--RDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 265 VLDmCAAPGgKT~~iA~lm--~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
|||+|||+|..+..++..+ +....++++|+|+.++..++++.++.+. .++++..|+.+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~ 60 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARD 60 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTC
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhH
Confidence 7999999999999999987 2236999999999999999999988777 68888888754
No 110
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.74 E-value=1.4e-07 Score=93.33 Aligned_cols=74 Identities=23% Similarity=0.252 Sum_probs=64.4
Q ss_pred HHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-eEEEE-cchhHHH
Q 009628 252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYK-LDALKAV 325 (530)
Q Consensus 252 v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~-i~~~~-~Da~k~v 325 (530)
+...++...+..+||+++.+-|--|++||.-+.++|+++++|+++++.+.++++.++.|+.. |..+. +|++..+
T Consensus 50 ~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l 125 (219)
T COG4122 50 LLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVL 125 (219)
T ss_pred HHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHH
Confidence 44455566678899999999999999999999888999999999999999999999999987 77777 5887753
No 111
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=1.2e-07 Score=97.24 Aligned_cols=73 Identities=19% Similarity=0.210 Sum_probs=63.4
Q ss_pred eccchHHHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEc
Q 009628 246 QNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKL 319 (530)
Q Consensus 246 Qd~~S~v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~ 319 (530)
-|..|.+...-|....+.+|||+|||-|-.++.+|... ++.+|+-+|.|...++..++|++.+++++..++..
T Consensus 143 lD~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s 215 (300)
T COG2813 143 LDKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVESARKNLAANGVENTEVWAS 215 (300)
T ss_pred cChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEe
Confidence 47789999999988888899999999999999999975 47899999999999999999999999887534433
No 112
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.74 E-value=1.4e-07 Score=99.55 Aligned_cols=60 Identities=17% Similarity=0.196 Sum_probs=54.6
Q ss_pred CeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhHHH
Q 009628 263 ERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAV 325 (530)
Q Consensus 263 e~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k~v 325 (530)
.+|||+|||+|..+..+|... .+|+|+|.+...++.+++|++.+|+++++++..|+.+.+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~ 258 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFT 258 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHH
Confidence 479999999999999888753 489999999999999999999999999999999997753
No 113
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.72 E-value=2e-07 Score=95.29 Aligned_cols=68 Identities=24% Similarity=0.202 Sum_probs=59.9
Q ss_pred HHHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEEcc
Q 009628 251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLD 320 (530)
Q Consensus 251 ~v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~-~i~~~~~D 320 (530)
-.+...|..+||++|||++||-|+-+..+|+.. ..+|++++.|.+..+.+++.++++|+. +|++...|
T Consensus 62 ~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d 130 (283)
T COG2230 62 DLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQD 130 (283)
T ss_pred HHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecc
Confidence 345667889999999999999999999999976 479999999999999999999999997 67776655
No 114
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.71 E-value=2e-07 Score=90.17 Aligned_cols=62 Identities=16% Similarity=0.125 Sum_probs=54.7
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEEcchhHH
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALKA 324 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~-~i~~~~~Da~k~ 324 (530)
+|.+|||+|||+|..+..++.. ...+|+++|.++..+..+++|++.+++. .+++++.|+.+.
T Consensus 49 ~g~~vLDLfaGsG~lglea~sr--ga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~ 111 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSR--GAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRA 111 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHH
Confidence 5889999999999999888774 3458999999999999999999999986 589999998765
No 115
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.71 E-value=1.5e-07 Score=98.60 Aligned_cols=63 Identities=24% Similarity=0.216 Sum_probs=56.5
Q ss_pred CCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-eEEEEcchhHH
Q 009628 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALKA 324 (530)
Q Consensus 260 qpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~-i~~~~~Da~k~ 324 (530)
++|++||||.||-|-.|+.+|..- .-+|+|+|+++..++-+++|++.+++.. |.++.+|+...
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g--~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev 250 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKG--RPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREV 250 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcC--CceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHh
Confidence 469999999999999999999853 3349999999999999999999999988 89999998764
No 116
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.70 E-value=3e-07 Score=92.31 Aligned_cols=51 Identities=27% Similarity=0.279 Sum_probs=42.3
Q ss_pred CCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC
Q 009628 259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL 311 (530)
Q Consensus 259 pqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl 311 (530)
+.+|.+|||+|||+|..+..++. .+ ...|+|+|+|+.++..++++++..++
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~-~g-~~~v~giDis~~~l~~A~~n~~~~~~ 167 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAK-LG-AKKVLAVDIDPQAVEAARENAELNGV 167 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHH-cC-CCeEEEEECCHHHHHHHHHHHHHcCC
Confidence 46899999999999987776554 33 35799999999999999999887765
No 117
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.70 E-value=2.8e-07 Score=91.46 Aligned_cols=63 Identities=13% Similarity=0.123 Sum_probs=53.2
Q ss_pred CCCCeEEeeccCCChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhCC-CceEEEEcchh
Q 009628 260 QKGERILDMCAAPGGKTTAIASLLR-DEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDAL 322 (530)
Q Consensus 260 qpGe~VLDmCAAPGgKT~~iA~lm~-~~G~VvA~D~s~~kv~~i~~~a~~~gl-~~i~~~~~Da~ 322 (530)
.++.+|||++||+|..+..++..+. +.++|+++|.|+.++..++++++..+. ..++++..|+.
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~ 116 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIR 116 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChh
Confidence 5788999999999999999998763 568999999999999999999887764 35777777764
No 118
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.68 E-value=1.9e-07 Score=99.70 Aligned_cols=64 Identities=27% Similarity=0.243 Sum_probs=50.7
Q ss_pred HHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcc
Q 009628 252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320 (530)
Q Consensus 252 v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~D 320 (530)
.....+++++|.+|||+|||+|+.+.++|... ..+|+++|.|+.++..++++++ ++ .+++...|
T Consensus 158 ~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~--~l-~v~~~~~D 221 (383)
T PRK11705 158 LICRKLQLKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCA--GL-PVEIRLQD 221 (383)
T ss_pred HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhc--cC-eEEEEECc
Confidence 34456788999999999999999999999865 3589999999999998888775 32 24444444
No 119
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.67 E-value=7.4e-08 Score=94.46 Aligned_cols=64 Identities=19% Similarity=0.293 Sum_probs=57.8
Q ss_pred CCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEEcchhHHH
Q 009628 262 GERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALKAV 325 (530)
Q Consensus 262 Ge~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~-~i~~~~~Da~k~v 325 (530)
-.+||+++++.|--|.++|..+.+.|+|+++|+++.+...+++++++.|+. .|+++..|+...+
T Consensus 46 ~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l 110 (205)
T PF01596_consen 46 PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVL 110 (205)
T ss_dssp -SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHH
T ss_pred CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhH
Confidence 459999999999999999999988899999999999999999999999985 5999999998754
No 120
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.65 E-value=4e-08 Score=93.37 Aligned_cols=40 Identities=40% Similarity=0.516 Sum_probs=33.4
Q ss_pred CCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHH
Q 009628 258 DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHN 297 (530)
Q Consensus 258 dpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~ 297 (530)
++.++.+|||+||||||+|..++...+..++|+|+|..+.
T Consensus 20 ~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 20 KPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp -TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred CcccccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 4445699999999999999999987766799999999876
No 121
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.65 E-value=3.4e-07 Score=93.71 Aligned_cols=62 Identities=27% Similarity=0.319 Sum_probs=50.5
Q ss_pred hcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcch
Q 009628 256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321 (530)
Q Consensus 256 ~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da 321 (530)
++...++.+|||++||.|.-+..+|.. ..+|+|+|.|+..+..+++++++.++ ++++...|.
T Consensus 115 ~~~~~~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~ 176 (287)
T PRK12335 115 AVQTVKPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKENL-NIRTGLYDI 176 (287)
T ss_pred HhhccCCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEech
Confidence 333334459999999999999998873 36999999999999999999999888 677766664
No 122
>PHA03411 putative methyltransferase; Provisional
Probab=98.65 E-value=7.1e-07 Score=91.01 Aligned_cols=61 Identities=18% Similarity=0.245 Sum_probs=46.7
Q ss_pred cCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 257 LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
++++++.+|||+|||+|..+.+++.... ..+|+++|+++..+...+++ +..+.++..|++.
T Consensus 60 ~~~~~~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n-----~~~v~~v~~D~~e 120 (279)
T PHA03411 60 IDAHCTGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRL-----LPEAEWITSDVFE 120 (279)
T ss_pred hccccCCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHh-----CcCCEEEECchhh
Confidence 4566778999999999999988877643 36899999999888766654 2356677777643
No 123
>PHA03412 putative methyltransferase; Provisional
Probab=98.65 E-value=1.8e-07 Score=93.51 Aligned_cols=57 Identities=23% Similarity=0.328 Sum_probs=44.8
Q ss_pred CCCCeEEeeccCCChHHHHHHHHcC--CCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcch
Q 009628 260 QKGERILDMCAAPGGKTTAIASLLR--DEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321 (530)
Q Consensus 260 qpGe~VLDmCAAPGgKT~~iA~lm~--~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da 321 (530)
..+.+|||+|||+|..+..++..|. ...+|+|+|+++..+..++++. ..+.++..|+
T Consensus 48 ~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-----~~~~~~~~D~ 106 (241)
T PHA03412 48 CTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-----PEATWINADA 106 (241)
T ss_pred cCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc-----cCCEEEEcch
Confidence 3477999999999999999998763 3569999999999988777653 2355666654
No 124
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.65 E-value=3.2e-07 Score=88.58 Aligned_cols=68 Identities=24% Similarity=0.258 Sum_probs=52.1
Q ss_pred HHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcch
Q 009628 252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321 (530)
Q Consensus 252 v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da 321 (530)
.....+...++.+|||+|||+|..+..++....+.+.++++|.++..+..++++.. ....+.++..|+
T Consensus 30 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~ 97 (223)
T TIGR01934 30 RAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADA 97 (223)
T ss_pred HHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecch
Confidence 34445556689999999999999999999877544799999999999888877655 223466666554
No 125
>PRK06922 hypothetical protein; Provisional
Probab=98.63 E-value=5.2e-07 Score=101.14 Aligned_cols=67 Identities=25% Similarity=0.281 Sum_probs=53.6
Q ss_pred HHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchh
Q 009628 254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (530)
Q Consensus 254 ~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (530)
...++..+|.+|||+|||+|.-+..+|... +.+.|+|+|.|+.++..++++++..+. ++.++.+|+.
T Consensus 411 ~~i~d~~~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g~-~ie~I~gDa~ 477 (677)
T PRK06922 411 RIILDYIKGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEGR-SWNVIKGDAI 477 (677)
T ss_pred HHHhhhcCCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCC-CeEEEEcchH
Confidence 445666689999999999999988888865 458999999999999999887766553 4666777754
No 126
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.63 E-value=3.5e-07 Score=89.35 Aligned_cols=58 Identities=17% Similarity=0.182 Sum_probs=49.3
Q ss_pred CeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-eEEEEcch
Q 009628 263 ERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDA 321 (530)
Q Consensus 263 e~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~-i~~~~~Da 321 (530)
.+|||++||.|+.+..+|+... ..+|+++|.|+..+..+++++++.|+.. |+++..|.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~-~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~ 59 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDS 59 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEeccc
Confidence 3799999999999999998763 4799999999999999999999888754 77776664
No 127
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.61 E-value=3e-07 Score=86.69 Aligned_cols=65 Identities=20% Similarity=0.261 Sum_probs=54.7
Q ss_pred HHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 254 ~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
+..+++++|++|||+|||+|..|..++.. .++|+|+|.++..+..+++++.. ..+++++..|+.+
T Consensus 6 ~~~~~~~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~ 70 (169)
T smart00650 6 VRAANLRPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALK 70 (169)
T ss_pred HHhcCCCCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhc
Confidence 45667889999999999999999999885 36899999999999999888754 3568888888754
No 128
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.61 E-value=5e-07 Score=94.30 Aligned_cols=66 Identities=20% Similarity=0.221 Sum_probs=46.3
Q ss_pred HHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CceEEEEcch
Q 009628 254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDA 321 (530)
Q Consensus 254 ~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl-~~i~~~~~Da 321 (530)
...+++.+|.+|||++||+|..+..++.. ....|+++|.|...+...+...+..+. .+|.+..+|+
T Consensus 115 ~~~l~~l~g~~VLDIGCG~G~~~~~la~~--g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~ 181 (322)
T PRK15068 115 LPHLSPLKGRTVLDVGCGNGYHMWRMLGA--GAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGI 181 (322)
T ss_pred HHhhCCCCCCEEEEeccCCcHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCH
Confidence 33556678999999999999999988874 234799999999877544433333332 3466666654
No 129
>PLN03075 nicotianamine synthase; Provisional
Probab=98.58 E-value=7e-07 Score=92.03 Aligned_cols=63 Identities=10% Similarity=-0.010 Sum_probs=52.8
Q ss_pred CCCeEEeeccCCChHHHHHH-HHcCCCcEEEEEeCCHHHHHHHHHHHHH-hCCCc-eEEEEcchhH
Q 009628 261 KGERILDMCAAPGGKTTAIA-SLLRDEGEVVAVDRSHNKVMDIQKLAAE-MGLKC-ITTYKLDALK 323 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA-~lm~~~G~VvA~D~s~~kv~~i~~~a~~-~gl~~-i~~~~~Da~k 323 (530)
+.++|+|++||||+.|+.+. +.+.++++++++|+++..+...+++++. .|+.. |++...|+..
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~ 188 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMD 188 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhh
Confidence 67899999999999877653 3456779999999999999999999965 78865 9999888754
No 130
>PRK04457 spermidine synthase; Provisional
Probab=98.57 E-value=2.2e-06 Score=86.92 Aligned_cols=64 Identities=13% Similarity=0.084 Sum_probs=51.5
Q ss_pred CCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CceEEEEcchhHH
Q 009628 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKA 324 (530)
Q Consensus 260 qpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl-~~i~~~~~Da~k~ 324 (530)
.++.+|||+|+|.|..+..++... +..+|+++|+++..+..++++....+. ..++++..|+.+.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~ 129 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEY 129 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHH
Confidence 456799999999999999998876 468999999999999888877654333 4588888888764
No 131
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.56 E-value=2.4e-06 Score=82.39 Aligned_cols=65 Identities=23% Similarity=0.144 Sum_probs=52.7
Q ss_pred HhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchh
Q 009628 255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (530)
Q Consensus 255 ~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (530)
+..+.-.|..|+|+|||+|..+...+.| + .-+|+|+|+++..++.+++|+.+ +...|.++..|..
T Consensus 39 ~~~g~l~g~~V~DlG~GTG~La~ga~~l-G-a~~V~~vdiD~~a~ei~r~N~~~-l~g~v~f~~~dv~ 103 (198)
T COG2263 39 YLRGDLEGKTVLDLGAGTGILAIGAALL-G-ASRVLAVDIDPEALEIARANAEE-LLGDVEFVVADVS 103 (198)
T ss_pred HHcCCcCCCEEEEcCCCcCHHHHHHHhc-C-CcEEEEEecCHHHHHHHHHHHHh-hCCceEEEEcchh
Confidence 3345667889999999999988766653 3 46999999999999999999999 4456888887754
No 132
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.56 E-value=4.1e-07 Score=95.63 Aligned_cols=58 Identities=19% Similarity=0.250 Sum_probs=46.0
Q ss_pred CCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcch
Q 009628 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321 (530)
Q Consensus 260 qpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da 321 (530)
.++.+|||+|||+|..+..++.... .+.|+++|.|+.++..+++++. ..+++++..|+
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~~---~~~i~~i~gD~ 169 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP---LKECKIIEGDA 169 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhhh---ccCCeEEeccH
Confidence 4788999999999999988888764 4799999999999988877653 23456666664
No 133
>PRK13795 hypothetical protein; Provisional
Probab=98.55 E-value=2.6e-07 Score=104.58 Aligned_cols=159 Identities=22% Similarity=0.300 Sum_probs=108.3
Q ss_pred CCCeEEEcchhHHHHHhccccccCceeeccCCccCCCEEEEEEcccCCcCCCCCcccccccccccCCCCCCCcccCCceE
Q 009628 122 PPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLY 201 (530)
Q Consensus 122 ~~k~ViVd~~~~eAVLrGA~v~aPGil~~~~~i~~Gd~VaV~~~~~~~~~~~~w~~~~~rg~~~~~~~~~~~~~~~~gv~ 201 (530)
..+.|+||+.++++|++||+|++|||++++..+++||.|.|+ ...+.+
T Consensus 125 ~~~~VvVd~ga~~~v~~Ga~l~~~GI~~~~~~i~~gd~V~I~--------------------------------~e~g~~ 172 (636)
T PRK13795 125 LKKWVIVDKGALEPIKNGKNVLAPGVVEADLDIKKGDEVVVV--------------------------------TEDGEV 172 (636)
T ss_pred CCcEEEEcccHHHHHHcCCcccCCceEEEeCCCCCCCEEEEE--------------------------------eCCCCE
Confidence 578999999999999999999999999999999999999999 234668
Q ss_pred EeecccccCcccccccCCceeeecCCccccCCCccccc--------cceEEEeccchHH---HHHhcCCCCCCeEEeecc
Q 009628 202 IGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVL--------EGEIFLQNLPSIV---TAHALDPQKGERILDMCA 270 (530)
Q Consensus 202 Vg~Gia~mSreelf~~p~GlaV~~~~~v~~lP~~~~~~--------~G~i~lQd~~S~v---~~~~LdpqpGe~VLDmCA 270 (530)
+|+|++.|+.+++....+|.+|+.....+..|++.+.. ...-.++++-... .-.++.-. ++.|. -|
T Consensus 173 vavG~a~~s~~e~~~~~kG~~Vkvr~~~~~~~~l~~~~~~~~~~~~~n~~~l~~~~~~ai~~Ir~~~~~~-~~~v~--Va 249 (636)
T PRK13795 173 VGVGRAKMDGDDMIKRFRGRAVKVRKSGRGSPRLPPGRATLEDAIEANRKHLEEKEKEAVNFIRGVAEKY-NLPVS--VS 249 (636)
T ss_pred EEEEEeccCHHHHhhccCCeEEEEEEcccCCcccCCCcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHc-CCCEE--EE
Confidence 99999999999999999999999877666666654321 1111122111111 11111111 33443 45
Q ss_pred CCChHHH-HHHHHcC---CCcEEEEEeCC---HHHHHHHHHHHHHhCCCceE
Q 009628 271 APGGKTT-AIASLLR---DEGEVVAVDRS---HNKVMDIQKLAAEMGLKCIT 315 (530)
Q Consensus 271 APGgKT~-~iA~lm~---~~G~VvA~D~s---~~kv~~i~~~a~~~gl~~i~ 315 (530)
-+|||-+ .++.|+. ..-.++-+|.. +.-++.+++.++++|++.+.
T Consensus 250 ~SGGKDS~vll~L~~~a~~~~~vvfiDTg~efpet~e~v~~~~~~~gi~i~~ 301 (636)
T PRK13795 250 FSGGKDSLVVLDLAREALKDFKAFFNNTGLEFPETVENVKEVAEEYGIELIE 301 (636)
T ss_pred ecCcHHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHcCCcEEE
Confidence 6688854 3333332 22366767743 44566788888889986443
No 134
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.54 E-value=5.8e-07 Score=87.45 Aligned_cols=57 Identities=19% Similarity=0.171 Sum_probs=43.3
Q ss_pred CCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcch
Q 009628 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321 (530)
Q Consensus 260 qpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da 321 (530)
..+.+|||+|||+|..+.+++... ....++++|.++..+...++... .++.++..|.
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~ 89 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLS----ENVQFICGDA 89 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcC----CCCeEEecch
Confidence 345799999999999999999875 35789999999988876655433 2455555554
No 135
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.53 E-value=1.1e-06 Score=88.78 Aligned_cols=60 Identities=22% Similarity=0.204 Sum_probs=53.3
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-eEEEEcch
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDA 321 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~-i~~~~~Da 321 (530)
.+..|||+|||+|..++.++.-+. ++.|+|+|+|+..+....+||+++++.+ |.+++.+.
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~m 208 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIM 208 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccc
Confidence 355899999999999999988887 7999999999999999999999999976 77776654
No 136
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.53 E-value=1.3e-06 Score=90.99 Aligned_cols=46 Identities=22% Similarity=0.300 Sum_probs=37.0
Q ss_pred hcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHH
Q 009628 256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQ 303 (530)
Q Consensus 256 ~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~ 303 (530)
.+++.+|.+|||+|||+|..+..++.. ....|+++|.|+.++...+
T Consensus 116 ~l~~~~g~~VLDvGCG~G~~~~~~~~~--g~~~v~GiDpS~~ml~q~~ 161 (314)
T TIGR00452 116 HLSPLKGRTILDVGCGSGYHMWRMLGH--GAKSLVGIDPTVLFLCQFE 161 (314)
T ss_pred hcCCCCCCEEEEeccCCcHHHHHHHHc--CCCEEEEEcCCHHHHHHHH
Confidence 346788999999999999988877763 3358999999998876543
No 137
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.52 E-value=1.9e-06 Score=88.81 Aligned_cols=70 Identities=13% Similarity=0.143 Sum_probs=57.9
Q ss_pred HHHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-eEEEEcchh
Q 009628 251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDAL 322 (530)
Q Consensus 251 ~v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~-i~~~~~Da~ 322 (530)
......++.+++.+|||+|||+|..+..+++.. ++.+++++|. +..+..+++++++.|+.. |+++..|++
T Consensus 139 ~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~ 209 (306)
T TIGR02716 139 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIY 209 (306)
T ss_pred HHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCcc
Confidence 344556678889999999999999999999875 4689999998 678888899999999854 888887764
No 138
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.51 E-value=1.1e-06 Score=86.78 Aligned_cols=74 Identities=22% Similarity=0.223 Sum_probs=63.1
Q ss_pred HHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-eEEEEcchhHHH
Q 009628 252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALKAV 325 (530)
Q Consensus 252 v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~-i~~~~~Da~k~v 325 (530)
+...++..-...++||++.-+|--+...|..+.+.|+|+|+|+++.-.+.-.+..+..|... |+++.+++..++
T Consensus 64 fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esL 138 (237)
T KOG1663|consen 64 FLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESL 138 (237)
T ss_pred HHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhH
Confidence 44444444467899999999999999999999999999999999999999899999999865 889998887764
No 139
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.51 E-value=1.6e-06 Score=85.34 Aligned_cols=66 Identities=24% Similarity=0.259 Sum_probs=51.3
Q ss_pred HHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcch
Q 009628 252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321 (530)
Q Consensus 252 v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da 321 (530)
+..+.+.+.++.+|||+|||+|..+..++.. ...|+++|.++..+..+++++...+. .+.+...|+
T Consensus 39 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~~ 104 (233)
T PRK05134 39 YIREHAGGLFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESGL-KIDYRQTTA 104 (233)
T ss_pred HHHHhccCCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcCC-ceEEEecCH
Confidence 3444555678999999999999999888774 35799999999999988888877665 455555554
No 140
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.51 E-value=4.4e-07 Score=85.96 Aligned_cols=59 Identities=22% Similarity=0.268 Sum_probs=49.5
Q ss_pred CeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CceEEEEcchhHH
Q 009628 263 ERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKA 324 (530)
Q Consensus 263 e~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl-~~i~~~~~Da~k~ 324 (530)
+.|||+|||-||-|.++|... ..|+|+|+++.|+..++.||+-+|. ++|.++..|.++.
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~ 60 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFEL 60 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHH
T ss_pred CEEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHH
Confidence 479999999999999999863 4799999999999999999999996 5699999999875
No 141
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.50 E-value=1.6e-06 Score=84.55 Aligned_cols=62 Identities=23% Similarity=0.194 Sum_probs=49.6
Q ss_pred CCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 259 pqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
+..+.+|||+|||+|..+..++.. ...++++|.++..+..+++++...+...+.+...|+.+
T Consensus 43 ~~~~~~vLdlG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~ 104 (224)
T TIGR01983 43 PLFGLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVED 104 (224)
T ss_pred CCCCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHH
Confidence 345889999999999988888763 24699999999999999998887776556666666543
No 142
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.49 E-value=6.9e-07 Score=86.91 Aligned_cols=133 Identities=20% Similarity=0.303 Sum_probs=97.0
Q ss_pred eEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhHHHhhcCCCCCCCCccCCCCC
Q 009628 264 RILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDN 343 (530)
Q Consensus 264 ~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k~v~~~~~~~~~~~~~~~~~~ 343 (530)
.+||+|||-|..++++|... ++-.++|+|++...+..+.+.+.+.+++|+.++..|+...+..
T Consensus 20 l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~---------------- 82 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRR---------------- 82 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHH----------------
T ss_pred eEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhh----------------
Confidence 89999999999999999975 4579999999999999999999999999999999998764321
Q ss_pred ccccccccccccccccccchhccCCCCCCcccccccccccccccccchhhhhhhhhhccCCCCCCccCCCcccCCCCCCC
Q 009628 344 NYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKVSNEKGVERTYVSKADTRKNMRRMRNGPGRNQCLGGRAENSKGFSP 423 (530)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~~f~~ 423 (530)
-+++
T Consensus 83 ----------------------------------------------------------------------------~~~~ 86 (195)
T PF02390_consen 83 ----------------------------------------------------------------------------LFPP 86 (195)
T ss_dssp ----------------------------------------------------------------------------HSTT
T ss_pred ----------------------------------------------------------------------------cccC
Confidence 1345
Q ss_pred CCCCeEEEcCCCCCCCCcccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCCCHHHHHHHHH---h
Q 009628 424 NSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEALVRYALD---R 500 (530)
Q Consensus 424 ~sFDrVLlDaPCSglG~rp~l~~~~~t~~~l~~~~~~Qr~ll~~A~~lLkpGG~LVYSTCSi~~~ENE~vV~~~L~---~ 500 (530)
+++|.|.+.=|+ +| .+..+.-+++ .|..+|+...+.|+|||.|.+.| .++....++++ .
T Consensus 87 ~~v~~i~i~FPD---------PW-pK~rH~krRl--~~~~fl~~~~~~L~~gG~l~~~T------D~~~y~~~~~~~~~~ 148 (195)
T PF02390_consen 87 GSVDRIYINFPD---------PW-PKKRHHKRRL--VNPEFLELLARVLKPGGELYFAT------DVEEYAEWMLEQFEE 148 (195)
T ss_dssp TSEEEEEEES---------------SGGGGGGST--TSHHHHHHHHHHEEEEEEEEEEE------S-HHHHHHHHHHHHH
T ss_pred CchheEEEeCCC---------CC-cccchhhhhc--CCchHHHHHHHHcCCCCEEEEEe------CCHHHHHHHHHHHHh
Confidence 789999987766 22 1111111111 36688899999999999999887 67777777765 4
Q ss_pred -CCCceee
Q 009628 501 -YKFLSLA 507 (530)
Q Consensus 501 -~~~~~l~ 507 (530)
.+.++..
T Consensus 149 ~~~~f~~~ 156 (195)
T PF02390_consen 149 SHPGFENI 156 (195)
T ss_dssp HSTTEEEE
T ss_pred cCcCeEEc
Confidence 4566665
No 143
>PLN02672 methionine S-methyltransferase
Probab=98.48 E-value=9.1e-07 Score=104.45 Aligned_cols=49 Identities=16% Similarity=0.045 Sum_probs=44.0
Q ss_pred CCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC
Q 009628 262 GERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL 311 (530)
Q Consensus 262 Ge~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl 311 (530)
|.+|||+|||+|..+..+|.... .+.|+|+|+|+..+..+++|++.+++
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~-~~~v~avDis~~Al~~A~~Na~~n~l 167 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWL-PSKVYGLDINPRAVKVAWINLYLNAL 167 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCc
Confidence 56899999999999999998764 47999999999999999999998764
No 144
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.45 E-value=1.4e-06 Score=89.95 Aligned_cols=93 Identities=17% Similarity=0.219 Sum_probs=64.2
Q ss_pred ccccCCCccccccceEEEeccchHHHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHH
Q 009628 228 RIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAA 307 (530)
Q Consensus 228 ~v~~lP~~~~~~~G~i~lQd~~S~v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~ 307 (530)
.++.+|.+....+-.-+++.....++..+ .++.+|||++||+|.||..|++.+.....++|+|+|+.++...+++++
T Consensus 33 ~i~~~peYy~tr~E~~il~~~~~~ia~~~---~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~ 109 (301)
T TIGR03438 33 QICELPEYYPTRTEAAILERHADEIAAAT---GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALA 109 (301)
T ss_pred HHHCCCccccHHHHHHHHHHHHHHHHHhh---CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHH
Confidence 35667777644333334444444444433 367899999999999999999877544789999999999998877765
Q ss_pred HhC-CCceEEEEcchhH
Q 009628 308 EMG-LKCITTYKLDALK 323 (530)
Q Consensus 308 ~~g-l~~i~~~~~Da~k 323 (530)
... --.|..+..|+..
T Consensus 110 ~~~p~~~v~~i~gD~~~ 126 (301)
T TIGR03438 110 ADYPQLEVHGICADFTQ 126 (301)
T ss_pred hhCCCceEEEEEEcccc
Confidence 422 1236667777653
No 145
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.44 E-value=3e-06 Score=87.34 Aligned_cols=63 Identities=27% Similarity=0.309 Sum_probs=52.5
Q ss_pred chHHHHHhcC--CCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 009628 249 PSIVTAHALD--PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC 313 (530)
Q Consensus 249 ~S~v~~~~Ld--pqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~ 313 (530)
...++..+|+ .++|.+|||++||+|-.+++.+.| +..+|+|+|+++..+...++|++.++++.
T Consensus 148 TT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kL--GA~~v~g~DiDp~AV~aa~eNa~~N~v~~ 212 (300)
T COG2264 148 TTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKL--GAKKVVGVDIDPQAVEAARENARLNGVEL 212 (300)
T ss_pred hHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHc--CCceEEEecCCHHHHHHHHHHHHHcCCch
Confidence 4456666665 579999999999999988776664 45789999999999999999999998764
No 146
>PRK13534 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=98.43 E-value=2.1e-07 Score=104.88 Aligned_cols=72 Identities=19% Similarity=0.354 Sum_probs=66.4
Q ss_pred CCeEEEcchhHHHHHhccccccCceeeccCCccCCCEEEEEEcccCCcCCCCCcccccccccccCCCCCCCcccCCceEE
Q 009628 123 PKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYI 202 (530)
Q Consensus 123 ~k~ViVd~~~~eAVLrGA~v~aPGil~~~~~i~~Gd~VaV~~~~~~~~~~~~w~~~~~rg~~~~~~~~~~~~~~~~gv~V 202 (530)
.+.|+||+.|++.|++||+||+|||++++++|++||+|.|. ..++.++
T Consensus 563 ~~~V~Vd~~a~~~v~~G~~v~apgVv~~d~~ir~gDeV~Vv--------------------------------~e~~~~l 610 (639)
T PRK13534 563 KYRVVVDKESEPFARKGKSVFAKFVIDCDEEIRPYDEVLVV--------------------------------NEDDELL 610 (639)
T ss_pred CcEEEECCcchhhhhCCCcccCCcceecCCCCCCCCEEEEE--------------------------------ecCCcEE
Confidence 48999999999999999999999999999999999999999 2347899
Q ss_pred eecccccCcccccccCCceeeecC
Q 009628 203 GQGTAMMSRAGIFRASEGIAVDMH 226 (530)
Q Consensus 203 g~Gia~mSreelf~~p~GlaV~~~ 226 (530)
|+|+++|+.++|....+|.+|+.-
T Consensus 611 avG~A~~~~~em~~~~~G~avkvR 634 (639)
T PRK13534 611 AYGKALLNGRELMEFNYGLAVKVR 634 (639)
T ss_pred EEEEEecCHHHHhhcCCceEEEEe
Confidence 999999999999998999998763
No 147
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.42 E-value=3.6e-06 Score=84.90 Aligned_cols=66 Identities=17% Similarity=0.171 Sum_probs=59.4
Q ss_pred CCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CceEEEEcchhHHH
Q 009628 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKAV 325 (530)
Q Consensus 260 qpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl-~~i~~~~~Da~k~v 325 (530)
..-.+||+++.+.|--|+++|..+.+.|+|+++|.++.+....+++.++.|+ ++|+++.+|+.+.+
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L 144 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVL 144 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHH
Confidence 3455999999999999999999998889999999999999999999999997 45999999998754
No 148
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.42 E-value=2.7e-06 Score=92.74 Aligned_cols=67 Identities=21% Similarity=0.254 Sum_probs=50.4
Q ss_pred hHHHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcch
Q 009628 250 SIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321 (530)
Q Consensus 250 S~v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da 321 (530)
.......+++.++.+|||+|||+|..|..++... ++|+|+|.++..+...++... ...++.++..|+
T Consensus 26 ~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~~~--~~~~i~~~~~d~ 92 (475)
T PLN02336 26 RPEILSLLPPYEGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESING--HYKNVKFMCADV 92 (475)
T ss_pred hhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHhc--cCCceEEEEecc
Confidence 3455566777788999999999999999999853 589999999999875433211 235677777775
No 149
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.39 E-value=1.4e-06 Score=90.03 Aligned_cols=64 Identities=25% Similarity=0.262 Sum_probs=49.9
Q ss_pred cchHHHHHhcC--CCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 009628 248 LPSIVTAHALD--PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC 313 (530)
Q Consensus 248 ~~S~v~~~~Ld--pqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~ 313 (530)
....++..+|. .++|.+|||++||+|--+...+.| +.++|+|+|+++..+...++|++.+|+..
T Consensus 146 ~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~kl--GA~~v~a~DiDp~Av~~a~~N~~~N~~~~ 211 (295)
T PF06325_consen 146 PTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKL--GAKKVVAIDIDPLAVEAARENAELNGVED 211 (295)
T ss_dssp HHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHT--TBSEEEEEESSCHHHHHHHHHHHHTT-TT
T ss_pred HHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHc--CCCeEEEecCCHHHHHHHHHHHHHcCCCe
Confidence 34455555554 578999999999999888766654 45799999999999999999999998764
No 150
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.39 E-value=9.1e-07 Score=84.73 Aligned_cols=60 Identities=25% Similarity=0.277 Sum_probs=51.7
Q ss_pred CeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-eEEEEcchhH
Q 009628 263 ERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALK 323 (530)
Q Consensus 263 e~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~-i~~~~~Da~k 323 (530)
.+|||++||-|.....|++- +=++.++++|-|+..|+.++..|++.|+++ |++..+|.++
T Consensus 69 ~~VlDLGtGNG~~L~~L~~e-gf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~ 129 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKE-GFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITD 129 (227)
T ss_pred cceeeccCCchHHHHHHHHh-cCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccC
Confidence 49999999999988888764 235679999999999999999999999998 9888888654
No 151
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.38 E-value=7.4e-06 Score=83.31 Aligned_cols=62 Identities=13% Similarity=0.092 Sum_probs=45.4
Q ss_pred CCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhC----CCceEEEEcchhHH
Q 009628 262 GERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG----LKCITTYKLDALKA 324 (530)
Q Consensus 262 Ge~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~g----l~~i~~~~~Da~k~ 324 (530)
..+||++++|.|+.+..++... ...+|+++|+++..++.+++.....+ -..++++..|+.+.
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~ 138 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKF 138 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHH
Confidence 4499999999999887776643 34689999999999988888765543 13355666666543
No 152
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.38 E-value=1.1e-06 Score=90.60 Aligned_cols=70 Identities=19% Similarity=0.204 Sum_probs=61.5
Q ss_pred HHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhHH
Q 009628 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (530)
Q Consensus 253 ~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k~ 324 (530)
+..+|.++||..+||++||.||.|.+|+..+++.|.|+|+|+++..+..+++++++ ..++++++.|....
T Consensus 11 vl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l 80 (296)
T PRK00050 11 VVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNL 80 (296)
T ss_pred HHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHH
Confidence 45677889999999999999999999999987789999999999999999887766 46799999988764
No 153
>PRK13794 hypothetical protein; Provisional
Probab=98.37 E-value=1.1e-06 Score=96.28 Aligned_cols=163 Identities=20% Similarity=0.274 Sum_probs=105.6
Q ss_pred CCCeEEEcchhHHHHH-hccccccCceeeccCCccCCCEEEEEEcccCCcCCCCCcccccccccccCCCCCCCcccCCce
Q 009628 122 PPKEVIVSRKCAEAVL-RGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGL 200 (530)
Q Consensus 122 ~~k~ViVd~~~~eAVL-rGA~v~aPGil~~~~~i~~Gd~VaV~~~~~~~~~~~~w~~~~~rg~~~~~~~~~~~~~~~~gv 200 (530)
..+.|+||+.|+++|+ +||+||+|||++++++++.||.|.|+ ...+.
T Consensus 123 ~~~~V~Vd~ga~~~v~~~G~~v~~~GV~~~~~~i~~gd~V~Iv--------------------------------~~~g~ 170 (479)
T PRK13794 123 KKKFIVVKDDVPKFIRNKGASVLRPGVAEASEDIEEGDDVIIL--------------------------------DENGD 170 (479)
T ss_pred CCcEEEECccHHHHHHhCCCeecCCceEEecCCcCCCCEEEEE--------------------------------cCCCc
Confidence 3578999999999999 99999999999999999999999999 33466
Q ss_pred EEeecccccCcccccccCCceeeecCCcc----ccCC----Cccc----c-ccceEEEeccch---HHHHHhcCCCCCCe
Q 009628 201 YIGQGTAMMSRAGIFRASEGIAVDMHNRI----FQLP----SFYD----V-LEGEIFLQNLPS---IVTAHALDPQKGER 264 (530)
Q Consensus 201 ~Vg~Gia~mSreelf~~p~GlaV~~~~~v----~~lP----~~~~----~-~~G~i~lQd~~S---~v~~~~LdpqpGe~ 264 (530)
.+|+|++.|+.+++....+|.+|+..... +..| .+.. + ....-.++.+-. .+.-.++. .-+.+
T Consensus 171 ~iavG~a~~s~~ei~~~~~G~~Vkvr~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~i~~~~~-~~~~~ 249 (479)
T PRK13794 171 VVGVGRARMSYEEIVNMEKGMVVKVRKSEEPKNSNILSEYGPGEETWKDMVEANKNVLDKYERNSIGFIRNTAE-KINKP 249 (479)
T ss_pred EEEEEEeecCHHHHHhccCceEEEEEeccCCcccccccccCCcCccHHHHHHhhHHHHHHHHHHHHHHHHHHHH-hcCCC
Confidence 99999999999999999999998775411 1111 1110 0 011111221111 11111121 12345
Q ss_pred EEeeccCCChHHHHH-HHHc----CCCcEEEEEeCC---HHHHHHHHHHHHHhCCCceEEEEcc
Q 009628 265 ILDMCAAPGGKTTAI-ASLL----RDEGEVVAVDRS---HNKVMDIQKLAAEMGLKCITTYKLD 320 (530)
Q Consensus 265 VLDmCAAPGgKT~~i-A~lm----~~~G~VvA~D~s---~~kv~~i~~~a~~~gl~~i~~~~~D 320 (530)
|+ .|-+|||-+.. +.++ +..-.++-+|-. +.-.+.+++.++++|++. ..+..+
T Consensus 250 v~--vs~SGGKDS~v~L~L~~~~~~~~~~vvfiDTG~efpet~e~i~~~~~~~gl~i-~~~~~~ 310 (479)
T PRK13794 250 VT--VAYSGGKDSLATLLLALKALGINFPVLFNDTGLEFPETLENVEDVEKHYGLEI-IRTKSE 310 (479)
T ss_pred EE--EEecchHHHHHHHHHHHHHhCCCeEEEEEECCCCChHHHHHHHHHHHhcCCcE-EEEchH
Confidence 54 56679996633 2222 334577778853 455666778888898874 344433
No 154
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.36 E-value=3.3e-06 Score=82.05 Aligned_cols=70 Identities=33% Similarity=0.286 Sum_probs=52.2
Q ss_pred ccchHHHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcch
Q 009628 247 NLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321 (530)
Q Consensus 247 d~~S~v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da 321 (530)
...|.+. .+++.-++.++||++||.|.-+..+|++ .-.|+|+|.|...++.+++.|++.+++ |++...|.
T Consensus 17 ~~hs~v~-~a~~~~~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~l~-i~~~~~Dl 86 (192)
T PF03848_consen 17 PTHSEVL-EAVPLLKPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEGLD-IRTRVADL 86 (192)
T ss_dssp ---HHHH-HHCTTS-SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT-T-EEEEE-BG
T ss_pred CCcHHHH-HHHhhcCCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcCce-eEEEEecc
Confidence 3345544 3455545669999999999999999984 248999999999999999999999988 88888774
No 155
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.35 E-value=6.2e-06 Score=80.68 Aligned_cols=47 Identities=21% Similarity=0.179 Sum_probs=39.8
Q ss_pred CCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHH
Q 009628 258 DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKL 305 (530)
Q Consensus 258 dpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~ 305 (530)
...++.+|||+|||+|..+..++..+. .+.|+|+|+|+..++.++++
T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~~-~~~v~giDiS~~~l~~A~~~ 86 (204)
T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLLP-FKHIYGVEINEYAVEKAKAY 86 (204)
T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHhh
Confidence 345778999999999999999988653 47999999999999877654
No 156
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.35 E-value=6.2e-06 Score=80.68 Aligned_cols=60 Identities=27% Similarity=0.219 Sum_probs=49.9
Q ss_pred CCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CceEEEEcch
Q 009628 259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDA 321 (530)
Q Consensus 259 pqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl-~~i~~~~~Da 321 (530)
+.++.+|||+|||+|..+..++.. ..+|+|+|.|+..+..+++++...+. .++.+...|+
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~ 113 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDL 113 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCh
Confidence 567899999999999999998873 35899999999999999998887765 3566666664
No 157
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.34 E-value=1.8e-06 Score=86.94 Aligned_cols=43 Identities=26% Similarity=0.309 Sum_probs=37.9
Q ss_pred CCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHH
Q 009628 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKL 305 (530)
Q Consensus 260 qpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~ 305 (530)
--|.+|||++||.|-.+.+||.+ ...|+|+|.+...++..++.
T Consensus 88 ~~g~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h 130 (282)
T KOG1270|consen 88 LLGMKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEH 130 (282)
T ss_pred cCCceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHh
Confidence 34788999999999999999996 36899999999999988776
No 158
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.33 E-value=5.5e-06 Score=82.57 Aligned_cols=122 Identities=20% Similarity=0.298 Sum_probs=98.2
Q ss_pred CeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhHHHhhcCCCCCCCCccCCCC
Q 009628 263 ERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKD 342 (530)
Q Consensus 263 e~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k~v~~~~~~~~~~~~~~~~~ 342 (530)
-.+|++|||-|..++++|.. .++--.+|+|+...-+..+.+.+.+.|++||..++.||...+.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~-nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~---------------- 112 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKK-NPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLD---------------- 112 (227)
T ss_pred cEEEEECCCCCHHHHHHHHH-CCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHH----------------
Confidence 48999999999999999996 4556899999999999999999999999999999999987542
Q ss_pred CccccccccccccccccccchhccCCCCCCcccccccccccccccccchhhhhhhhhhccCCCCCCccCCCcccCCCCCC
Q 009628 343 NNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKVSNEKGVERTYVSKADTRKNMRRMRNGPGRNQCLGGRAENSKGFS 422 (530)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~~f~ 422 (530)
.|.
T Consensus 113 -----------------------------------------------------------------------------~~~ 115 (227)
T COG0220 113 -----------------------------------------------------------------------------YLI 115 (227)
T ss_pred -----------------------------------------------------------------------------hcC
Confidence 123
Q ss_pred C-CCCCeEEEcCCCCCCCCcccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCCCHHHHHH
Q 009628 423 P-NSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEALVRY 496 (530)
Q Consensus 423 ~-~sFDrVLlDaPCSglG~rp~l~~~~~t~~~l~~~~~~Qr~ll~~A~~lLkpGG~LVYSTCSi~~~ENE~vV~~ 496 (530)
+ ++.|+|.+.=|+ +| .+.-+.-+++ .|..+|....+.|||||.|.+.| .||....|
T Consensus 116 ~~~sl~~I~i~FPD---------PW-pKkRH~KRRl--~~~~fl~~~a~~Lk~gG~l~~aT------D~~~y~e~ 172 (227)
T COG0220 116 PDGSLDKIYINFPD---------PW-PKKRHHKRRL--TQPEFLKLYARKLKPGGVLHFAT------DNEEYFEW 172 (227)
T ss_pred CCCCeeEEEEECCC---------CC-CCcccccccc--CCHHHHHHHHHHccCCCEEEEEe------cCHHHHHH
Confidence 3 488999887666 33 1222222222 47789999999999999999988 77888777
No 159
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.32 E-value=2.8e-06 Score=86.29 Aligned_cols=46 Identities=15% Similarity=0.185 Sum_probs=34.5
Q ss_pred CCCCeEEeeccCCChH----HHHHHHHcCC----CcEEEEEeCCHHHHHHHHHH
Q 009628 260 QKGERILDMCAAPGGK----TTAIASLLRD----EGEVVAVDRSHNKVMDIQKL 305 (530)
Q Consensus 260 qpGe~VLDmCAAPGgK----T~~iA~lm~~----~G~VvA~D~s~~kv~~i~~~ 305 (530)
.++.+|||++||+|-- +..+++.+.. +.+|+|+|+|+.+++.+++.
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~ 151 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAG 151 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcC
Confidence 4567999999999964 4444454432 46999999999999877653
No 160
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.32 E-value=2.2e-06 Score=86.91 Aligned_cols=57 Identities=21% Similarity=0.191 Sum_probs=43.0
Q ss_pred CCCCeEEeeccCCChHHHHHHHHcCCC--cEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcch
Q 009628 260 QKGERILDMCAAPGGKTTAIASLLRDE--GEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321 (530)
Q Consensus 260 qpGe~VLDmCAAPGgKT~~iA~lm~~~--G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da 321 (530)
+++.+|||++||+|..+..++..+... ..|+++|.|+..+..+.+. ..++.+...|+
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~-----~~~~~~~~~d~ 142 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR-----YPQVTFCVASS 142 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh-----CCCCeEEEeec
Confidence 466889999999999999999877543 3799999999988765442 23455555553
No 161
>PRK00811 spermidine synthase; Provisional
Probab=98.31 E-value=2e-05 Score=80.81 Aligned_cols=63 Identities=16% Similarity=0.152 Sum_probs=49.6
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhC-----CCceEEEEcchhHH
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG-----LKCITTYKLDALKA 324 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~g-----l~~i~~~~~Da~k~ 324 (530)
...+|||+|+|.|+.+..++.. .+..+|+++|+++..++.+++....++ -..++++..|+.+.
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~-~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~ 143 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKH-PSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKF 143 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcC-CCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHH
Confidence 4569999999999999888763 234689999999999999988877653 23477888887664
No 162
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.30 E-value=1.7e-07 Score=79.88 Aligned_cols=51 Identities=22% Similarity=0.238 Sum_probs=37.8
Q ss_pred EeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEE
Q 009628 266 LDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTY 317 (530)
Q Consensus 266 LDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~ 317 (530)
||++||+|..+..|+... +..+++++|.|+.++..++++....+.......
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~ 51 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERL 51 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEE
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEE
Confidence 799999999999999876 568999999999999777777777665443333
No 163
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.28 E-value=1.4e-06 Score=84.56 Aligned_cols=66 Identities=23% Similarity=0.219 Sum_probs=49.1
Q ss_pred HHHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcch
Q 009628 251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321 (530)
Q Consensus 251 ~v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da 321 (530)
++...+|.-..-.++||++||-|-.|.+||..- .+++|+|.|+..+...+++++ ++++|++...|.
T Consensus 33 ~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~--~~~~V~~~~~dv 98 (201)
T PF05401_consen 33 ATLLAALPRRRYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLA--GLPHVEWIQADV 98 (201)
T ss_dssp HHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTT--T-SSEEEEES-T
T ss_pred HHHHHhcCccccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcC--CCCCeEEEECcC
Confidence 344445665667889999999999999999864 689999999999999888776 457788887764
No 164
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.25 E-value=2.1e-06 Score=78.37 Aligned_cols=49 Identities=27% Similarity=0.293 Sum_probs=38.4
Q ss_pred hHHHHHhcC-CCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHH
Q 009628 250 SIVTAHALD-PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMD 301 (530)
Q Consensus 250 S~v~~~~Ld-pqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~ 301 (530)
+-....+++ ..++.+|||++||.|..+..++.. + -+|+++|.++..+..
T Consensus 10 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~-~~~~g~D~~~~~~~~ 59 (161)
T PF13489_consen 10 ADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR--G-FEVTGVDISPQMIEK 59 (161)
T ss_dssp HHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT--T-SEEEEEESSHHHHHH
T ss_pred HHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh--C-CEEEEEECCHHHHhh
Confidence 344455554 568899999999999998888764 2 299999999988765
No 165
>PRK10742 putative methyltransferase; Provisional
Probab=98.24 E-value=1.9e-05 Score=79.57 Aligned_cols=71 Identities=18% Similarity=0.136 Sum_probs=59.5
Q ss_pred HHHHHhcCCCCCC--eEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh------CC---CceEEEEc
Q 009628 251 IVTAHALDPQKGE--RILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM------GL---KCITTYKL 319 (530)
Q Consensus 251 ~v~~~~LdpqpGe--~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~------gl---~~i~~~~~ 319 (530)
...+.++.+++|. +|||++||.|.-+..+|.+ .++|+++|+++.-...+++++++. +. .+|+.++.
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~ 152 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA 152 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeC
Confidence 4667888999999 9999999999999999986 467999999999999999998885 32 45777777
Q ss_pred chhHH
Q 009628 320 DALKA 324 (530)
Q Consensus 320 Da~k~ 324 (530)
|+...
T Consensus 153 da~~~ 157 (250)
T PRK10742 153 SSLTA 157 (250)
T ss_pred cHHHH
Confidence 77664
No 166
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.23 E-value=1.1e-06 Score=90.56 Aligned_cols=71 Identities=18% Similarity=0.239 Sum_probs=49.1
Q ss_pred cceEEEeccchHHHHHhcCCCCCCeEEeeccCCChHHHHHHHHc------CCCcEEEEEeCCHHHHHHHHHHHHHhC
Q 009628 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLL------RDEGEVVAVDRSHNKVMDIQKLAAEMG 310 (530)
Q Consensus 240 ~G~i~lQd~~S~v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm------~~~G~VvA~D~s~~kv~~i~~~a~~~g 310 (530)
.|.+|--..-+.+.+.++.++++++|||.|||.|+...++...+ ...-.++|+|+++..+...+-++.-.|
T Consensus 25 ~G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~ 101 (311)
T PF02384_consen 25 LGQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHG 101 (311)
T ss_dssp CGGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTT
T ss_pred cceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhc
Confidence 35554434445677777899999999999999999998887754 245799999999998877665554444
No 167
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.23 E-value=1.1e-05 Score=79.67 Aligned_cols=53 Identities=13% Similarity=0.053 Sum_probs=40.7
Q ss_pred ccchHHHHHhc---CCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHH
Q 009628 247 NLPSIVTAHAL---DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDI 302 (530)
Q Consensus 247 d~~S~v~~~~L---dpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i 302 (530)
..|+-...+.+ .+++|.+|||++||.|--+..+|+. .-.|+|+|.|+..++.+
T Consensus 17 ~~p~~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~ 72 (213)
T TIGR03840 17 SEVNPLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQF 72 (213)
T ss_pred CCCCHHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHH
Confidence 44555554443 2357889999999999999999873 23899999999998854
No 168
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.23 E-value=2.2e-06 Score=84.94 Aligned_cols=45 Identities=24% Similarity=0.440 Sum_probs=34.3
Q ss_pred HHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHH
Q 009628 254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300 (530)
Q Consensus 254 ~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~ 300 (530)
+....|+.|++|||.|.|-|-.++..+. ++.-+|+.++.+++-+.
T Consensus 127 v~~V~~~~G~rVLDtC~GLGYtAi~a~~--rGA~~VitvEkdp~VLe 171 (287)
T COG2521 127 VELVKVKRGERVLDTCTGLGYTAIEALE--RGAIHVITVEKDPNVLE 171 (287)
T ss_pred hheeccccCCEeeeeccCccHHHHHHHH--cCCcEEEEEeeCCCeEE
Confidence 3455688899999999999986654444 45459999999987653
No 169
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=98.21 E-value=1.4e-05 Score=76.97 Aligned_cols=74 Identities=26% Similarity=0.264 Sum_probs=50.9
Q ss_pred CCCCeEEEcCCCCCCCCcccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCCCHHH-HHHHHHhCC
Q 009628 424 NSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEAL-VRYALDRYK 502 (530)
Q Consensus 424 ~sFDrVLlDaPCSglG~rp~l~~~~~t~~~l~~~~~~Qr~ll~~A~~lLkpGG~LVYSTCSi~~~ENE~v-V~~~L~~~~ 502 (530)
-..|.||.|.---++|+|-+- -.....+-+..|.-|+.+++|+|.+| |-+.-++.++. .+...+.|.
T Consensus 135 r~VdvVlSDMapnaTGvr~~D---------h~~~i~LC~s~l~~al~~~~p~g~fv---cK~w~g~e~~~l~r~l~~~f~ 202 (232)
T KOG4589|consen 135 RPVDVVLSDMAPNATGVRIRD---------HYRSIELCDSALLFALTLLIPNGSFV---CKLWDGSEEALLQRRLQAVFT 202 (232)
T ss_pred CcccEEEeccCCCCcCcchhh---------HHHHHHHHHHHHHHhhhhcCCCcEEE---EEEecCCchHHHHHHHHHHhh
Confidence 579999999877888876221 11222344578889999999999998 76666665554 555556676
Q ss_pred CceeecC
Q 009628 503 FLSLAPQ 509 (530)
Q Consensus 503 ~~~l~~~ 509 (530)
.+..+..
T Consensus 203 ~Vk~vKP 209 (232)
T KOG4589|consen 203 NVKKVKP 209 (232)
T ss_pred hcEeeCC
Confidence 6666544
No 170
>PRK05785 hypothetical protein; Provisional
Probab=98.19 E-value=6.1e-06 Score=81.90 Aligned_cols=42 Identities=21% Similarity=0.254 Sum_probs=36.1
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHH
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQK 304 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~ 304 (530)
++.+|||+|||+|--+.+++... .++|+|+|.|+++++..++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~ 92 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLV 92 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHh
Confidence 47899999999999999998865 4799999999999876543
No 171
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.15 E-value=8.2e-06 Score=82.43 Aligned_cols=66 Identities=17% Similarity=0.188 Sum_probs=55.4
Q ss_pred HHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 253 ~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
.+..+++++|++|||+|||+|..|..++.. ..+|+|+|+++..+..++++++. .++++++..|+.+
T Consensus 21 iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~ 86 (258)
T PRK14896 21 IVEYAEDTDGDPVLEIGPGKGALTDELAKR---AKKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALK 86 (258)
T ss_pred HHHhcCCCCcCeEEEEeCccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHhcc--CCCEEEEEecccc
Confidence 445667889999999999999999999986 35899999999999998887765 4678888888754
No 172
>PRK03612 spermidine synthase; Provisional
Probab=98.15 E-value=4.9e-05 Score=84.40 Aligned_cols=64 Identities=17% Similarity=0.133 Sum_probs=46.0
Q ss_pred CCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHH--HHHhC---C--CceEEEEcchhHH
Q 009628 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKL--AAEMG---L--KCITTYKLDALKA 324 (530)
Q Consensus 260 qpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~--a~~~g---l--~~i~~~~~Da~k~ 324 (530)
++..+|||+|+|.|.-+..+++. .+..+|+++|+++..++..+++ ..+.. + +.++++..|+.+.
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~ 366 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNW 366 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHH
Confidence 44679999999999988888762 3336999999999999888773 22211 1 3467777776653
No 173
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.13 E-value=1.3e-05 Score=78.72 Aligned_cols=58 Identities=19% Similarity=0.264 Sum_probs=45.0
Q ss_pred CCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcch
Q 009628 258 DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321 (530)
Q Consensus 258 dpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da 321 (530)
.+.+-.+|.|++||||.-|-.|++... ...|+++|.|..+++..++. +.+.++...|.
T Consensus 27 p~~~~~~v~DLGCGpGnsTelL~~RwP-~A~i~GiDsS~~Mla~Aa~r-----lp~~~f~~aDl 84 (257)
T COG4106 27 PLERPRRVVDLGCGPGNSTELLARRWP-DAVITGIDSSPAMLAKAAQR-----LPDATFEEADL 84 (257)
T ss_pred CccccceeeecCCCCCHHHHHHHHhCC-CCeEeeccCCHHHHHHHHHh-----CCCCceecccH
Confidence 345667999999999999999999875 58999999999998766332 34455555554
No 174
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.11 E-value=2.4e-05 Score=77.41 Aligned_cols=65 Identities=25% Similarity=0.328 Sum_probs=55.6
Q ss_pred cCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 257 LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
+.++||.+||-++||+|.--+|++...+.+|.|+|++.|+....++...|++. +||-.+-.||.+
T Consensus 69 ~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R--~NIiPIl~DAr~ 133 (229)
T PF01269_consen 69 IPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR--PNIIPILEDARH 133 (229)
T ss_dssp -S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS--TTEEEEES-TTS
T ss_pred cCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC--CceeeeeccCCC
Confidence 34689999999999999999999999999999999999999999999999876 789889888865
No 175
>PRK06202 hypothetical protein; Provisional
Probab=98.10 E-value=1.2e-05 Score=79.33 Aligned_cols=54 Identities=22% Similarity=0.229 Sum_probs=42.7
Q ss_pred HHhcCCCCCCeEEeeccCCChHHHHHHHHcCCC---cEEEEEeCCHHHHHHHHHHHH
Q 009628 254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDE---GEVVAVDRSHNKVMDIQKLAA 307 (530)
Q Consensus 254 ~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~---G~VvA~D~s~~kv~~i~~~a~ 307 (530)
...+...++.+|||+|||+|..+..|+..+... .+|+|+|.|+.++...+++.+
T Consensus 53 ~~~l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~ 109 (232)
T PRK06202 53 RPALSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPR 109 (232)
T ss_pred HHhcCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccc
Confidence 334455678899999999999999998766433 499999999999987766544
No 176
>PRK01581 speE spermidine synthase; Validated
Probab=98.07 E-value=5.6e-05 Score=80.10 Aligned_cols=66 Identities=12% Similarity=-0.008 Sum_probs=43.2
Q ss_pred cCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHH--HH---H--hCCCceEEEEcchhHH
Q 009628 257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKL--AA---E--MGLKCITTYKLDALKA 324 (530)
Q Consensus 257 LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~--a~---~--~gl~~i~~~~~Da~k~ 324 (530)
..+.| .+||++|+|.|+-+..++. ..+..+|+++|+++..++.+++. .. + +.-..++++..|+.+.
T Consensus 147 ~h~~P-krVLIIGgGdG~tlrelLk-~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~f 219 (374)
T PRK01581 147 KVIDP-KRVLILGGGDGLALREVLK-YETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEF 219 (374)
T ss_pred hCCCC-CEEEEECCCHHHHHHHHHh-cCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHH
Confidence 34444 5999999999985554544 23347999999999988777641 11 1 1123577777777654
No 177
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.06 E-value=3.8e-05 Score=74.53 Aligned_cols=56 Identities=16% Similarity=0.202 Sum_probs=42.3
Q ss_pred CCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 259 pqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
++||.+|||++||.|..-.+|..- .+-..+++|+++.++....+ .| +.++.+|+-.
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~----rG---v~Viq~Dld~ 66 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVA----RG---VSVIQGDLDE 66 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHH----cC---CCEEECCHHH
Confidence 468999999999999877776663 34689999999999865543 34 4467777644
No 178
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.00 E-value=3e-05 Score=80.15 Aligned_cols=69 Identities=17% Similarity=0.224 Sum_probs=59.9
Q ss_pred HHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhC-CCceEEEEcchhH
Q 009628 252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG-LKCITTYKLDALK 323 (530)
Q Consensus 252 v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~g-l~~i~~~~~Da~k 323 (530)
..+..+++.++++|||+|||+|..|..++.. .++|+|+|+++..+..++++++..+ ..+++++..|+++
T Consensus 27 ~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~---~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~ 96 (294)
T PTZ00338 27 KIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL---AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALK 96 (294)
T ss_pred HHHHhcCCCCcCEEEEecCchHHHHHHHHHh---CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhh
Confidence 3455678889999999999999999999875 3579999999999999999988777 4679999999876
No 179
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=97.99 E-value=0.00016 Score=71.63 Aligned_cols=49 Identities=27% Similarity=0.203 Sum_probs=38.8
Q ss_pred CCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC
Q 009628 258 DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK 312 (530)
Q Consensus 258 dpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~ 312 (530)
.+.++.+|||.+||.|--+.+||+. .-.|+|+|.|+..++.+ +++.++.
T Consensus 34 ~~~~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~---~~~~~l~ 82 (218)
T PRK13255 34 ALPAGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQF---FAENGLT 82 (218)
T ss_pred CCCCCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHH---HHHcCCC
Confidence 4457889999999999999999972 24899999999998864 3455543
No 180
>PLN02366 spermidine synthase
Probab=97.97 E-value=0.00027 Score=73.56 Aligned_cols=64 Identities=11% Similarity=0.129 Sum_probs=49.7
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhC--C--CceEEEEcchhHHH
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG--L--KCITTYKLDALKAV 325 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~g--l--~~i~~~~~Da~k~v 325 (530)
...+||++++|.|+-...++.. .+..+|+.+|+++..++..++.....+ + ..++++..|+.+.+
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l 158 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFL 158 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHH
Confidence 4579999999999988888764 344689999999999988888766542 3 34888888887643
No 181
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=97.96 E-value=9.5e-05 Score=72.22 Aligned_cols=59 Identities=34% Similarity=0.304 Sum_probs=48.6
Q ss_pred CCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CceEEEEcc
Q 009628 259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLD 320 (530)
Q Consensus 259 pqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl-~~i~~~~~D 320 (530)
..++.+|||+|||+|..+..++.. ...|+++|.|+..+..+++++...++ +.|.+...|
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d 120 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGD 120 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC
Confidence 357889999999999999988874 35799999999999999998887776 346666555
No 182
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.95 E-value=6.7e-05 Score=83.05 Aligned_cols=136 Identities=15% Similarity=0.186 Sum_probs=101.4
Q ss_pred CCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhHHHhhcCCCCCCCCccC
Q 009628 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCN 339 (530)
Q Consensus 260 qpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k~v~~~~~~~~~~~~~~ 339 (530)
..+..+||+|||-|..+.++|... ++-.++|+|++...+..+.+.+++.|++|+.++..|+....
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~-------------- 410 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLIL-------------- 410 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHH--------------
Confidence 357789999999999999999975 45689999999999999999999999999988887754321
Q ss_pred CCCCccccccccccccccccccchhccCCCCCCcccccccccccccccccchhhhhhhhhhccCCCCCCccCCCcccCCC
Q 009628 340 SKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKVSNEKGVERTYVSKADTRKNMRRMRNGPGRNQCLGGRAENSK 419 (530)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~ 419 (530)
.
T Consensus 411 -------------------------------------------------------------------------------~ 411 (506)
T PRK01544 411 -------------------------------------------------------------------------------N 411 (506)
T ss_pred -------------------------------------------------------------------------------H
Confidence 0
Q ss_pred CCCCCCCCeEEEcCCCCCCCCcccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCCCHHHHHHHHH
Q 009628 420 GFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEALVRYALD 499 (530)
Q Consensus 420 ~f~~~sFDrVLlDaPCSglG~rp~l~~~~~t~~~l~~~~~~Qr~ll~~A~~lLkpGG~LVYSTCSi~~~ENE~vV~~~L~ 499 (530)
.|+++++|.|.+.=|+ +| .+..+.-+++ .|..+|+...++|||||.|-+.| .+++...|+++
T Consensus 412 ~~~~~sv~~i~i~FPD---------PW-pKkrh~krRl--~~~~fl~~~~~~Lk~gG~i~~~T------D~~~y~~~~~~ 473 (506)
T PRK01544 412 DLPNNSLDGIYILFPD---------PW-IKNKQKKKRI--FNKERLKILQDKLKDNGNLVFAS------DIENYFYEAIE 473 (506)
T ss_pred hcCcccccEEEEECCC---------CC-CCCCCccccc--cCHHHHHHHHHhcCCCCEEEEEc------CCHHHHHHHHH
Confidence 2556789999987665 33 1111111122 36688899999999999999887 56677666544
Q ss_pred ---hCCCceee
Q 009628 500 ---RYKFLSLA 507 (530)
Q Consensus 500 ---~~~~~~l~ 507 (530)
+++.+++.
T Consensus 474 ~~~~~~~f~~~ 484 (506)
T PRK01544 474 LIQQNGNFEII 484 (506)
T ss_pred HHHhCCCeEec
Confidence 56666654
No 183
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.94 E-value=2.9e-05 Score=84.49 Aligned_cols=78 Identities=24% Similarity=0.239 Sum_probs=65.3
Q ss_pred EEEeccchHHH------HHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEE
Q 009628 243 IFLQNLPSIVT------AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITT 316 (530)
Q Consensus 243 i~lQd~~S~v~------~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~ 316 (530)
.|.|+=.|+.. ...++..++..+||+|||+|.....+|. ..+.|++++.++..+..++++|+.+|++|.++
T Consensus 359 AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~---~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~F 435 (534)
T KOG2187|consen 359 AFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALAR---GVKRVIGVEISPDAVEDAEKNAQINGISNATF 435 (534)
T ss_pred hhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhc---cccceeeeecChhhcchhhhcchhcCccceee
Confidence 36677666553 3456777889999999999999888876 45789999999999999999999999999999
Q ss_pred EEcchhH
Q 009628 317 YKLDALK 323 (530)
Q Consensus 317 ~~~Da~k 323 (530)
+.+-+.+
T Consensus 436 i~gqaE~ 442 (534)
T KOG2187|consen 436 IVGQAED 442 (534)
T ss_pred eecchhh
Confidence 9886655
No 184
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.90 E-value=8.6e-05 Score=73.59 Aligned_cols=125 Identities=26% Similarity=0.422 Sum_probs=84.9
Q ss_pred CeEEeeccCCChHHHHHHHHcCC----CcE----EEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhHHHhhcCCCCCC
Q 009628 263 ERILDMCAAPGGKTTAIASLLRD----EGE----VVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDE 334 (530)
Q Consensus 263 e~VLDmCAAPGgKT~~iA~lm~~----~G~----VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k~v~~~~~~~~~ 334 (530)
.|++|+|||||+++..+++.+-+ .++ |+|+|..+.. .+..|..++.|.++.-.
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----------PI~GV~qlq~DIT~~st-------- 103 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----------PIEGVIQLQGDITSAST-------- 103 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----------ccCceEEeecccCCHhH--------
Confidence 58999999999999999887643 333 9999987532 45667778888765310
Q ss_pred CCccCCCCCccccccccccccccccccchhccCCCCCCcccccccccccccccccchhhhhhhhhhccCCCCCCccCCCc
Q 009628 335 PNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKVSNEKGVERTYVSKADTRKNMRRMRNGPGRNQCLGGR 414 (530)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~g~ 414 (530)
+. +
T Consensus 104 ---------------------------------------------------------ae--~------------------ 106 (294)
T KOG1099|consen 104 ---------------------------------------------------------AE--A------------------ 106 (294)
T ss_pred ---------------------------------------------------------HH--H------------------
Confidence 00 0
Q ss_pred ccCCCCCCCCCCCeEEEcCCCCCCCCcccchhhhhhHHHHHHHHHHHHHHHHHH----HhcCCCCCEEEEEecCCCCCCC
Q 009628 415 AENSKGFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQA----VQLVRPGGIIVYSTCTINPGEN 490 (530)
Q Consensus 415 ~~~~~~f~~~sFDrVLlDaPCSglG~rp~l~~~~~t~~~l~~~~~~Qr~ll~~A----~~lLkpGG~LVYSTCSi~~~EN 490 (530)
....|..++.|.|++|-----+| ++++..+- |.+||-.| ...|||||.+| --|..+++
T Consensus 107 --Ii~hfggekAdlVvcDGAPDvTG-----------lHd~DEy~--Q~qLllaAl~i~t~Vlk~Gg~FV---aKifRg~~ 168 (294)
T KOG1099|consen 107 --IIEHFGGEKADLVVCDGAPDVTG-----------LHDLDEYV--QAQLLLAALNIATCVLKPGGSFV---AKIFRGRD 168 (294)
T ss_pred --HHHHhCCCCccEEEeCCCCCccc-----------cccHHHHH--HHHHHHHHHHHHhheecCCCeee---hhhhccCc
Confidence 01145557899999985433333 35555554 55555555 46899999998 45889999
Q ss_pred HHHHHHHHHhC
Q 009628 491 EALVRYALDRY 501 (530)
Q Consensus 491 E~vV~~~L~~~ 501 (530)
-..+-.-|++|
T Consensus 169 tslLysql~~f 179 (294)
T KOG1099|consen 169 TSLLYSQLRKF 179 (294)
T ss_pred hHHHHHHHHHH
Confidence 88877666653
No 185
>smart00359 PUA Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase.
Probab=97.90 E-value=1.7e-05 Score=64.81 Aligned_cols=71 Identities=32% Similarity=0.578 Sum_probs=61.7
Q ss_pred eEEEcchhHHHHHhccccccCceeeccCCccCCCEEEEEEcccCCcCCCCCcccccccccccCCCCCCCcccCCceEEee
Q 009628 125 EVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQ 204 (530)
Q Consensus 125 ~ViVd~~~~eAVLrGA~v~aPGil~~~~~i~~Gd~VaV~~~~~~~~~~~~w~~~~~rg~~~~~~~~~~~~~~~~gv~Vg~ 204 (530)
+|+|+..+++++++|+.||.+||..++..++.||.|.|+ +.++.++|.
T Consensus 2 ~i~v~~~~~~~i~~g~~v~~~~v~~~~~~~~~g~~V~v~--------------------------------~~~g~~vg~ 49 (77)
T smart00359 2 KVVVDDGAVKAILNGASLLAPGVVRVDGGIKEGDVVVIV--------------------------------DEKGEPLGI 49 (77)
T ss_pred EEEEchhHHHHHHcCCCcccceeEEEeCCcCCCCEEEEE--------------------------------cCCCCEEEE
Confidence 588999999999999999999999999899999999999 346789999
Q ss_pred cccccCccccccc--CCceeeecCC
Q 009628 205 GTAMMSRAGIFRA--SEGIAVDMHN 227 (530)
Q Consensus 205 Gia~mSreelf~~--p~GlaV~~~~ 227 (530)
|...++...+.+. ..|+.+++..
T Consensus 50 G~~~~~s~~~~~~~~~~g~~v~~~~ 74 (77)
T smart00359 50 GLANMSSEEMARIKGEKGLAVKVRR 74 (77)
T ss_pred EEEeCCHHHHHHHhccCceEEEEEE
Confidence 9998888887775 4788877643
No 186
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.87 E-value=0.00048 Score=71.55 Aligned_cols=85 Identities=25% Similarity=0.356 Sum_probs=61.1
Q ss_pred cCCccccCCCccccccceEEEeccchHH-HHHhcCCCCCCeEEeeccCCChHHHHH-HHHcCCCcEEEEEeCCHHHHHHH
Q 009628 225 MHNRIFQLPSFYDVLEGEIFLQNLPSIV-TAHALDPQKGERILDMCAAPGGKTTAI-ASLLRDEGEVVAVDRSHNKVMDI 302 (530)
Q Consensus 225 ~~~~v~~lP~~~~~~~G~i~lQd~~S~v-~~~~LdpqpGe~VLDmCAAPGgKT~~i-A~lm~~~G~VvA~D~s~~kv~~i 302 (530)
..+..|+||..-.+.+|. ++|.++-.+ +...-..++|.+||=|+|||=|..+.+ |+.|+ ..+|+..|.+++|++
T Consensus 133 ~~dfc~KLPd~vs~eeGA-l~ePLsV~~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~G-A~~VVi~d~~~~Rle-- 208 (354)
T KOG0024|consen 133 PADFCYKLPDNVSFEEGA-LIEPLSVGVHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMG-ASDVVITDLVANRLE-- 208 (354)
T ss_pred chHheeeCCCCCchhhcc-cccchhhhhhhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcC-CCcEEEeecCHHHHH--
Confidence 344568888776667786 567765322 233346899999999999996665555 56564 579999999999985
Q ss_pred HHHHHHhCCCceE
Q 009628 303 QKLAAEMGLKCIT 315 (530)
Q Consensus 303 ~~~a~~~gl~~i~ 315 (530)
.|+++|.+.+.
T Consensus 209 --~Ak~~Ga~~~~ 219 (354)
T KOG0024|consen 209 --LAKKFGATVTD 219 (354)
T ss_pred --HHHHhCCeEEe
Confidence 56668887543
No 187
>COG5270 PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis]
Probab=97.85 E-value=1.8e-05 Score=75.47 Aligned_cols=72 Identities=29% Similarity=0.446 Sum_probs=66.9
Q ss_pred CCeEEEcchhHHHHHhccccccCceeeccCCccCCCEEEEEEcccCCcCCCCCcccccccccccCCCCCCCcccCCceEE
Q 009628 123 PKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYI 202 (530)
Q Consensus 123 ~k~ViVd~~~~eAVLrGA~v~aPGil~~~~~i~~Gd~VaV~~~~~~~~~~~~w~~~~~rg~~~~~~~~~~~~~~~~gv~V 202 (530)
.|-+.|+++++|++.+|++|++|||+.+..++++||.|.|. +.++.++
T Consensus 128 ~k~~~i~~~~~E~~~Ng~nV~~~gV~e~~~~i~~~d~viVv--------------------------------~~ng~~v 175 (202)
T COG5270 128 KKGRKIDRGAVEPVKNGKNVLPPGVIEAEDSIERGDEVIVV--------------------------------SENGRVV 175 (202)
T ss_pred CccEEEEcccchhhhccCcccCCceeeccCCcccCCeEEEE--------------------------------ecCCEEE
Confidence 68889999999999999999999999999999999999999 5678999
Q ss_pred eecccccCcccccccCCceeeecC
Q 009628 203 GQGTAMMSRAGIFRASEGIAVDMH 226 (530)
Q Consensus 203 g~Gia~mSreelf~~p~GlaV~~~ 226 (530)
|+|.+.++.+++....+|.+|++.
T Consensus 176 GVg~a~~~~~~~in~~rG~~v~~~ 199 (202)
T COG5270 176 GVGIAKKSYEELINPERGTGVKPR 199 (202)
T ss_pred EEEEEecCHHHhcCcccCcccCCC
Confidence 999999999999988888888764
No 188
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=97.85 E-value=6.4e-05 Score=78.47 Aligned_cols=47 Identities=23% Similarity=0.175 Sum_probs=41.4
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhC
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG 310 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~g 310 (530)
+|.+|||+|||+|..+..++.. ...|+|+|+|+.++...++++++.+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~ 190 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEAL 190 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcc
Confidence 6889999999999999999873 3589999999999999999887653
No 189
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.80 E-value=6.7e-05 Score=76.44 Aligned_cols=65 Identities=26% Similarity=0.318 Sum_probs=54.5
Q ss_pred HHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 253 ~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
....+++++|++|||+|||+|..|..++... .+|+|+|.++..+..++++++. ++++++..|+.+
T Consensus 34 i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~---~~v~~i~~D~~~ 98 (272)
T PRK00274 34 IVDAAGPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAE---DNLTIIEGDALK 98 (272)
T ss_pred HHHhcCCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhcc---CceEEEEChhhc
Confidence 3446688899999999999999999999863 3899999999999988876542 578899999765
No 190
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.80 E-value=0.00035 Score=74.26 Aligned_cols=68 Identities=16% Similarity=0.112 Sum_probs=55.8
Q ss_pred hcCCCCCCeEEeeccCCChHHHHHHHHcCC-------------------------------Cc-------EEEEEeCCHH
Q 009628 256 ALDPQKGERILDMCAAPGGKTTAIASLLRD-------------------------------EG-------EVVAVDRSHN 297 (530)
Q Consensus 256 ~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~-------------------------------~G-------~VvA~D~s~~ 297 (530)
+.+.++++.++|=-||+|...+..|.+-.+ .. .++++|+++.
T Consensus 186 lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r 265 (381)
T COG0116 186 LAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPR 265 (381)
T ss_pred HcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHH
Confidence 446788999999999999888777754432 12 3789999999
Q ss_pred HHHHHHHHHHHhCCCc-eEEEEcchhH
Q 009628 298 KVMDIQKLAAEMGLKC-ITTYKLDALK 323 (530)
Q Consensus 298 kv~~i~~~a~~~gl~~-i~~~~~Da~k 323 (530)
.++.++.||++.|+.. |++.++|+..
T Consensus 266 ~i~~Ak~NA~~AGv~d~I~f~~~d~~~ 292 (381)
T COG0116 266 HIEGAKANARAAGVGDLIEFKQADATD 292 (381)
T ss_pred HHHHHHHHHHhcCCCceEEEEEcchhh
Confidence 9999999999999866 8999998754
No 191
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=97.77 E-value=6.7e-05 Score=78.83 Aligned_cols=47 Identities=19% Similarity=0.379 Sum_probs=36.1
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM 309 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~ 309 (530)
++.+|||||||=||=..-... .+-+.++++|++..-+..++++.+.+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~--~~i~~~vg~Dis~~si~ea~~Ry~~~ 108 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQK--AKIKHYVGIDISEESIEEARERYKQL 108 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHH--TT-SEEEEEES-HHHHHHHHHHHHHH
T ss_pred CCCeEEEecCCCchhHHHHHh--cCCCEEEEEeCCHHHHHHHHHHHHHh
Confidence 889999999999997766654 35689999999999999998887544
No 192
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.74 E-value=0.00042 Score=72.57 Aligned_cols=56 Identities=18% Similarity=0.127 Sum_probs=47.8
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh-CCCc-eEEE
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM-GLKC-ITTY 317 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~-gl~~-i~~~ 317 (530)
++.+|||+|||.|+....|+.... ..+++|+|+++..++.++++++.. ++.. |++.
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~-~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~ 171 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEY-GWRFVGSDIDPQALASAQAIISANPGLNGAIRLR 171 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEE
Confidence 568999999999999888887654 479999999999999999999998 7754 6554
No 193
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.73 E-value=0.00026 Score=68.55 Aligned_cols=59 Identities=20% Similarity=0.255 Sum_probs=51.2
Q ss_pred eEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 264 RILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 264 ~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
+|+|+++|.|-=+.-+|.+. ++.+++-+|.+.+|+.-++..++++|+++++++..++..
T Consensus 51 ~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~ 109 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE 109 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH
T ss_pred eEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc
Confidence 89999999999999998875 568999999999999999999999999999999877643
No 194
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=97.68 E-value=0.00014 Score=72.67 Aligned_cols=72 Identities=28% Similarity=0.325 Sum_probs=59.8
Q ss_pred hHHHHHhc------CCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 250 SIVTAHAL------DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 250 S~v~~~~L------dpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
|-+++..+ -++||.+||=++||.|..-+|++...++.|-|+|++.||.-=.+|...|++. +||..+..||..
T Consensus 139 SKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR--tNiiPIiEDArh 216 (317)
T KOG1596|consen 139 SKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR--TNIIPIIEDARH 216 (317)
T ss_pred HHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc--CCceeeeccCCC
Confidence 44555444 3689999999999999999999999999999999999998777777777654 778888888754
No 195
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.65 E-value=0.00039 Score=77.19 Aligned_cols=50 Identities=20% Similarity=0.287 Sum_probs=41.4
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCC-------CcEEEEEeCCHHHHHHHHHHHHHhC
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRD-------EGEVVAVDRSHNKVMDIQKLAAEMG 310 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~-------~G~VvA~D~s~~kv~~i~~~a~~~g 310 (530)
.+.+|||.|||.|+..++++..+.. .-.++++|+++..+..++.++..++
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~ 87 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA 87 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC
Confidence 3468999999999999999876632 2478999999999998888887665
No 196
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=97.65 E-value=0.00012 Score=81.00 Aligned_cols=40 Identities=33% Similarity=0.450 Sum_probs=36.3
Q ss_pred CCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHH
Q 009628 259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNK 298 (530)
Q Consensus 259 pqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~k 298 (530)
++++..|||+||||||+..-.++.|.-.+-|+++|+-+-|
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik 81 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK 81 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc
Confidence 3678999999999999999999999988999999998755
No 197
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.62 E-value=0.0006 Score=68.37 Aligned_cols=60 Identities=25% Similarity=0.264 Sum_probs=40.4
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
.|.+|| |-|-.--|+..+.+.+...+|+.+|+++.-+.-|.+.|++.|++ |++++.|...
T Consensus 44 ~gk~il--~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~-i~~~~~DlR~ 103 (243)
T PF01861_consen 44 EGKRIL--FLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP-IEAVHYDLRD 103 (243)
T ss_dssp TT-EEE--EES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---EEEE---TTS
T ss_pred cCCEEE--EEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc-eEEEEecccc
Confidence 477888 55677777766667676779999999999999999999999999 9999998654
No 198
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=97.61 E-value=0.0006 Score=67.51 Aligned_cols=59 Identities=19% Similarity=0.207 Sum_probs=46.6
Q ss_pred eEEEeccchHHHHHhcCCCC--CCeEEeeccCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHH
Q 009628 242 EIFLQNLPSIVTAHALDPQK--GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQK 304 (530)
Q Consensus 242 ~i~lQd~~S~v~~~~Ldpqp--Ge~VLDmCAAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~ 304 (530)
-+.+|-.-+..+..+|+.++ ..-|||++||+|--+..|. +.| ..+++|+|+.+++..++
T Consensus 29 i~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~----~~Gh~wiGvDiSpsML~~a~~ 90 (270)
T KOG1541|consen 29 IVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLS----DSGHQWIGVDISPSMLEQAVE 90 (270)
T ss_pred eeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheec----cCCceEEeecCCHHHHHHHHH
Confidence 46778888888888888766 6679999999997765443 344 78999999999987765
No 199
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.60 E-value=0.00041 Score=72.10 Aligned_cols=70 Identities=14% Similarity=0.205 Sum_probs=58.8
Q ss_pred HHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhHH
Q 009628 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (530)
Q Consensus 253 ~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k~ 324 (530)
+..+|.+++|..++|+.+|-||.|..|+..+++ |+|+|+|+++..+...+++.+.++ ..+++++.+....
T Consensus 12 vl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~L~~~~-~R~~~i~~nF~~l 81 (305)
T TIGR00006 12 VVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKERLSDFE-GRVVLIHDNFANF 81 (305)
T ss_pred HHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHhhcC-CcEEEEeCCHHHH
Confidence 445678899999999999999999999998865 999999999999999888777653 3578887776553
No 200
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.59 E-value=0.00057 Score=68.76 Aligned_cols=66 Identities=20% Similarity=0.230 Sum_probs=53.3
Q ss_pred HHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 253 ~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
+...+++.++++|||+|||+|..|..|+... ..|+|+|.++..+..+++++.. ..+++++..|+.+
T Consensus 21 i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~ 86 (253)
T TIGR00755 21 IVEAANVLEGDVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALK 86 (253)
T ss_pred HHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhc
Confidence 3445678899999999999999999999875 3599999999999888776543 3568888888754
No 201
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.58 E-value=0.00045 Score=68.43 Aligned_cols=61 Identities=18% Similarity=0.240 Sum_probs=54.3
Q ss_pred CCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 262 GERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 262 Ge~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
+.+|+|+++|+|-=+.-+|. +.++..|+-+|...+|+.-++...+++|++|+++++..+.+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI-~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~ 128 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAI-AFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEE 128 (215)
T ss_pred CCEEEEeCCCCCCchhhHHH-hccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhh
Confidence 68999999999999999985 45567799999999999999999999999999999876643
No 202
>PLN02823 spermine synthase
Probab=97.55 E-value=0.0022 Score=67.65 Aligned_cols=63 Identities=16% Similarity=0.066 Sum_probs=45.8
Q ss_pred CCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhC----CCceEEEEcchhHHH
Q 009628 262 GERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG----LKCITTYKLDALKAV 325 (530)
Q Consensus 262 Ge~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~g----l~~i~~~~~Da~k~v 325 (530)
..+||-++.|-|+-+..++.. ....+|+++|+++.-++.+++.....+ -..++++..|+.+.+
T Consensus 104 pk~VLiiGgG~G~~~re~l~~-~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L 170 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRH-KTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAEL 170 (336)
T ss_pred CCEEEEECCCchHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHH
Confidence 358999999999887776653 234689999999999988877654321 234777777776643
No 203
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.55 E-value=0.0017 Score=66.80 Aligned_cols=63 Identities=27% Similarity=0.229 Sum_probs=53.3
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHhCCCce-EEEEcchhH
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRD-EGEVVAVDRSHNKVMDIQKLAAEMGLKCI-TTYKLDALK 323 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~-~G~VvA~D~s~~kv~~i~~~a~~~gl~~i-~~~~~Da~k 323 (530)
.--+|||+|||+|.--.-+..-... .-+|.-.|.|+.-|+.-++++++.|+..| ++.+.|++.
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd 199 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFD 199 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCC
Confidence 3458999999999987766554433 35899999999999999999999999996 999999876
No 204
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=97.50 E-value=0.0001 Score=76.78 Aligned_cols=60 Identities=18% Similarity=0.217 Sum_probs=47.5
Q ss_pred hHHHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHH-------HHHHHHHHhCCC
Q 009628 250 SIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM-------DIQKLAAEMGLK 312 (530)
Q Consensus 250 S~v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~-------~i~~~a~~~gl~ 312 (530)
|.+.+...-++||+.|+|=..|+||.-...|.. .+.|++-|++-..+. .|+.|.+..|..
T Consensus 197 Sli~AN~Amv~pGdivyDPFVGTGslLvsaa~F---Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~ 263 (421)
T KOG2671|consen 197 SLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHF---GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSS 263 (421)
T ss_pred HHHHhhhhccCCCCEEecCccccCceeeehhhh---cceeeccccchheeecccCCCcchhHhHHHhCCc
Confidence 566677777899999999999999987766664 479999999987776 366777777643
No 205
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.50 E-value=0.0016 Score=74.92 Aligned_cols=64 Identities=20% Similarity=0.152 Sum_probs=52.9
Q ss_pred CCCCeEEeeccCCChHHHHHHHHcC-----------------------------------------CCcEEEEEeCCHHH
Q 009628 260 QKGERILDMCAAPGGKTTAIASLLR-----------------------------------------DEGEVVAVDRSHNK 298 (530)
Q Consensus 260 qpGe~VLDmCAAPGgKT~~iA~lm~-----------------------------------------~~G~VvA~D~s~~k 298 (530)
++++.++|-+||+|...+..|.+.. ....|+|+|+++..
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a 268 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV 268 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence 5789999999999988877765311 12379999999999
Q ss_pred HHHHHHHHHHhCCCc-eEEEEcchhH
Q 009628 299 VMDIQKLAAEMGLKC-ITTYKLDALK 323 (530)
Q Consensus 299 v~~i~~~a~~~gl~~-i~~~~~Da~k 323 (530)
+...++|++..|+.. |.+.+.|+.+
T Consensus 269 v~~A~~N~~~~g~~~~i~~~~~D~~~ 294 (702)
T PRK11783 269 IQAARKNARRAGVAELITFEVKDVAD 294 (702)
T ss_pred HHHHHHHHHHcCCCcceEEEeCChhh
Confidence 999999999999975 8888888754
No 206
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.50 E-value=0.0039 Score=60.17 Aligned_cols=61 Identities=20% Similarity=0.182 Sum_probs=52.5
Q ss_pred CCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 262 GERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 262 Ge~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
-+.+|+++||+|--++.+++...++....|.|+++..++.-++.|+.++.. +..+..|...
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~-~~~V~tdl~~ 104 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH-IDVVRTDLLS 104 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc-cceeehhHHh
Confidence 568999999999999999999988889999999999999999999888765 6666666543
No 207
>KOG2523 consensus Predicted RNA-binding protein with PUA domain [Translation, ribosomal structure and biogenesis]
Probab=97.48 E-value=0.00014 Score=68.14 Aligned_cols=95 Identities=26% Similarity=0.307 Sum_probs=71.6
Q ss_pred CceEEEe-CCCCccccCC--CCCCCCCCeEEEcchhHHHHHhccccccCceee----ccCCccCCCEEEEEEcccCCcCC
Q 009628 100 EYVVFVK-GSGPHTIDYG--YEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMA----CSSHVEKGDVVAVSVAVEQPTLD 172 (530)
Q Consensus 100 ~~~l~i~-~~gp~~~~~~--~~~~~~~k~ViVd~~~~eAVLrGA~v~aPGil~----~~~~i~~Gd~VaV~~~~~~~~~~ 172 (530)
-+++|+. ..||+-...- -.-....+++-||++|-+-||+||+++.||+.+ .++.+++|+.|+|.+
T Consensus 66 G~~~fF~~~dg~~~PTLRllhk~p~~~~~~qvD~GAIkfvlsGAnIMcPGlts~g~~l~~~~ekd~~V~i~a-------- 137 (181)
T KOG2523|consen 66 GEVLFFCHRDGPYIPTLRLLHKYPFIFPHVQVDRGAIKFVLSGANIMCPGLTSPGAKLPPGVEKDTIVAIMA-------- 137 (181)
T ss_pred CEEEEEEecCCCccchhHHHhhCCCccceEEecCcceeeeecCCceEcccCCCCcccCCCCccCCCEEEEEe--------
Confidence 5666776 5678742110 001225688999999999999999999999997 456688999999983
Q ss_pred CCCcccccccccccCCCCCCCcccCCceEEeecccccCcccccccCCceeeec
Q 009628 173 GGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDM 225 (530)
Q Consensus 173 ~~w~~~~~rg~~~~~~~~~~~~~~~~gv~Vg~Gia~mSreelf~~p~GlaV~~ 225 (530)
+.+.-.+++|.+.|+.+++-...+|+.++.
T Consensus 138 -----------------------eGK~~alAiG~~~ms~kei~s~nKGiGIE~ 167 (181)
T KOG2523|consen 138 -----------------------EGKEHALAIGLTKMSAKEIKSVNKGIGIEN 167 (181)
T ss_pred -----------------------cCchhhhhhhhhhhcHHHHHhhccCCceEE
Confidence 223446788999999999999999998875
No 208
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.47 E-value=0.00058 Score=68.40 Aligned_cols=46 Identities=20% Similarity=0.167 Sum_probs=40.1
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHH
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAA 307 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~ 307 (530)
.+-.+||++|-.|-.|.+||.-++. -.|+++|+++..+..++++++
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~-r~iLGvDID~~LI~~Ark~~r 103 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGP-RRILGVDIDPVLIQRARKEIR 103 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhcc-ceeeEeeccHHHHHHHHHhcc
Confidence 3557999999999999999998865 579999999999998887754
No 209
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.39 E-value=0.0011 Score=63.74 Aligned_cols=53 Identities=13% Similarity=0.172 Sum_probs=39.0
Q ss_pred CCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcch
Q 009628 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321 (530)
Q Consensus 260 qpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da 321 (530)
+++.+|||+|||+|..+..++... ...++++|.|+..+...++ . .++++..|+
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~----~---~~~~~~~d~ 64 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVA----R---GVNVIQGDL 64 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHH----c---CCeEEEEEh
Confidence 478899999999999988887643 3468999999988765432 2 245555554
No 210
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.38 E-value=0.0029 Score=62.04 Aligned_cols=63 Identities=24% Similarity=0.341 Sum_probs=56.1
Q ss_pred CCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 258 DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 258 dpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
.+++|++||=++||.|.-.+|++...+ .|.|+|++.|+.-..++...|++. .||-.+..||.+
T Consensus 73 pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~R--~Ni~PIL~DA~~ 135 (231)
T COG1889 73 PIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEKR--PNIIPILEDARK 135 (231)
T ss_pred CcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHhC--CCceeeecccCC
Confidence 468999999999999999999999887 899999999999999999998874 678888888754
No 211
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.36 E-value=0.00016 Score=67.31 Aligned_cols=58 Identities=19% Similarity=0.248 Sum_probs=46.1
Q ss_pred CCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcc
Q 009628 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320 (530)
Q Consensus 260 qpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~D 320 (530)
-.|..++|+|||.|... +|.-|...-.|+++|+++..++...+|+.++.+. |.+.+.|
T Consensus 47 iEgkkl~DLgcgcGmLs--~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvq-idlLqcd 104 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLS--IAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQ-IDLLQCD 104 (185)
T ss_pred ccCcchhhhcCchhhhH--HHhhcCCCceEEeeecCHHHHHHHhhchHHhhhh-hheeeee
Confidence 46899999999999988 4444656679999999999999999999998754 3333333
No 212
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.35 E-value=0.00079 Score=74.37 Aligned_cols=73 Identities=19% Similarity=0.209 Sum_probs=59.1
Q ss_pred cceEEEeccchHHHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCC---CcEEEEEeCCHHHHHHHHHHHHHhCCC
Q 009628 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRD---EGEVVAVDRSHNKVMDIQKLAAEMGLK 312 (530)
Q Consensus 240 ~G~i~lQd~~S~v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~---~G~VvA~D~s~~kv~~i~~~a~~~gl~ 312 (530)
.|++|-=...+-+.+++|.|+++.+|+|-|||+||.-+..+..++. ...+++.|++..-....+.++--.|+.
T Consensus 165 ~GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~ 240 (489)
T COG0286 165 AGEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIE 240 (489)
T ss_pred CCccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCC
Confidence 3777776777889999999999999999999999999999888853 378999999887776666555544443
No 213
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.33 E-value=0.0029 Score=63.83 Aligned_cols=70 Identities=17% Similarity=0.161 Sum_probs=49.3
Q ss_pred HHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC----CceEEEEcchhHHH
Q 009628 254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL----KCITTYKLDALKAV 325 (530)
Q Consensus 254 ~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl----~~i~~~~~Da~k~v 325 (530)
+.++.+ ...+||=+|-|-|+.+..+... ..-.+|+++|+++.-++..++....... ..++++..|+.+.+
T Consensus 70 ~~~~~~-~p~~VLiiGgG~G~~~~ell~~-~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l 143 (246)
T PF01564_consen 70 PLLLHP-NPKRVLIIGGGDGGTARELLKH-PPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFL 143 (246)
T ss_dssp HHHHSS-ST-EEEEEESTTSHHHHHHTTS-TT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHH
T ss_pred HhhcCC-CcCceEEEcCCChhhhhhhhhc-CCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHH
Confidence 334444 4679999999999988777653 2246899999999998888877665432 35788888887754
No 214
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.33 E-value=0.00086 Score=71.76 Aligned_cols=64 Identities=30% Similarity=0.205 Sum_probs=51.7
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc--eEEEEcchhHH
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC--ITTYKLDALKA 324 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~--i~~~~~Da~k~ 324 (530)
.+-+|||.-||+|--+.-.|.-+.+..+|+++|+|++.++.|++|++.++++. +++.+.||-..
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~l 114 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVL 114 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHH
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHH
Confidence 34589999999999999998877666799999999999999999999999976 88888888654
No 215
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.28 E-value=0.00042 Score=75.29 Aligned_cols=66 Identities=27% Similarity=0.256 Sum_probs=56.9
Q ss_pred CCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-eEEEEcchhH
Q 009628 258 DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALK 323 (530)
Q Consensus 258 dpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~-i~~~~~Da~k 323 (530)
.-.++-+|||.-+|+|--++..|..+.+-+.|+|+|.+.+-|..+++|++.++... ++..+.|+-.
T Consensus 106 ~~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~ 172 (525)
T KOG1253|consen 106 REEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANV 172 (525)
T ss_pred hccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHH
Confidence 34567899999999999999999999988999999999999999999999887765 5566666644
No 216
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=97.27 E-value=0.0028 Score=65.73 Aligned_cols=44 Identities=23% Similarity=0.330 Sum_probs=34.6
Q ss_pred CCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHH
Q 009628 259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQK 304 (530)
Q Consensus 259 pqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~ 304 (530)
+-.|.+|||++|+.|-.+..++. .+...|+|+|-+..-....+-
T Consensus 113 ~L~gk~VLDIGC~nGY~~frM~~--~GA~~ViGiDP~~lf~~QF~~ 156 (315)
T PF08003_consen 113 DLKGKRVLDIGCNNGYYSFRMLG--RGAKSVIGIDPSPLFYLQFEA 156 (315)
T ss_pred CcCCCEEEEecCCCcHHHHHHhh--cCCCEEEEECCChHHHHHHHH
Confidence 34699999999999999987776 345689999999876655433
No 217
>TIGR00432 arcsn_tRNA_tgt tRNA-guanine transglycosylase, archaeosine-15-forming. This tRNA-guanine transglycosylase (tgt) differs from the tgt of E. coli and other Bacteria in the site of action and the modification that results. It exchanges 7-cyano-7-deazaguanine (preQ0) with guanine at position 15 of archaeal tRNA; this nucleotide is subsequently converted to archaeosine, found exclusively in the Archaea. This enzyme from Haloferax volcanii has been purified, characterized, and partially sequenced and is the basis for identifying this family. In contrast, bacterial tgt catalyzes the exchange of preQ0 or preQ1 for the guanine base at position 34; this nucleotide is subsequently modified to queuosine. Archeoglobus fulgidus has both enzymes, while some other Archaea have just this one.
Probab=97.24 E-value=0.00032 Score=78.02 Aligned_cols=73 Identities=18% Similarity=0.367 Sum_probs=66.6
Q ss_pred CCCeEEEcchhHHHHHhccccccCceeeccCCccCCCEEEEEEcccCCcCCCCCcccccccccccCCCCCCCcccCCceE
Q 009628 122 PPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLY 201 (530)
Q Consensus 122 ~~k~ViVd~~~~eAVLrGA~v~aPGil~~~~~i~~Gd~VaV~~~~~~~~~~~~w~~~~~rg~~~~~~~~~~~~~~~~gv~ 201 (530)
....|+|+...++-+..|-+||+|||+.++++|+.||+|.|. ...+..
T Consensus 465 p~~rV~v~~~~~~f~~~g~~vfak~V~~ad~~IR~~dEV~vv--------------------------------~~~~~l 512 (540)
T TIGR00432 465 PAWRVAVNEESEPFARKGKSVFAKFIIDCDNNIRANDEVLIV--------------------------------NADDEL 512 (540)
T ss_pred CceEEEECCcchhhccCCCcccCCccccCCCCCCCCCeEEEE--------------------------------cCCCcE
Confidence 468899999999999999999999999999999999999999 334678
Q ss_pred EeecccccCcccccccCCceeeecC
Q 009628 202 IGQGTAMMSRAGIFRASEGIAVDMH 226 (530)
Q Consensus 202 Vg~Gia~mSreelf~~p~GlaV~~~ 226 (530)
+|+|++.|+..+|....+|++|+.-
T Consensus 513 lavGra~lsg~em~~~~~G~AVkvR 537 (540)
T TIGR00432 513 LATGKALLCAEEMMDLNHGQAVKTR 537 (540)
T ss_pred EEEEehhcCHHHHHhhcCceEEEEe
Confidence 9999999999999999999998763
No 218
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=97.15 E-value=0.0013 Score=61.81 Aligned_cols=45 Identities=22% Similarity=0.443 Sum_probs=31.2
Q ss_pred CCCCCCCCeEEEcCCCCCCCCcccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEecC
Q 009628 420 GFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCT 484 (530)
Q Consensus 420 ~f~~~sFDrVLlDaPCSglG~rp~l~~~~~t~~~l~~~~~~Qr~ll~~A~~lLkpGG~LVYSTCS 484 (530)
+|..++||.|++ +.+++ .+ .+ ..+.|.++.++|||||.|+....+
T Consensus 39 p~~~~~fD~v~~-----~~~l~-----------~~---~d-~~~~l~ei~rvLkpGG~l~i~d~~ 83 (160)
T PLN02232 39 PFDDCEFDAVTM-----GYGLR-----------NV---VD-RLRAMKEMYRVLKPGSRVSILDFN 83 (160)
T ss_pred CCCCCCeeEEEe-----cchhh-----------cC---CC-HHHHHHHHHHHcCcCeEEEEEECC
Confidence 355678999985 23321 11 11 238889999999999999877655
No 219
>PRK05429 gamma-glutamyl kinase; Provisional
Probab=97.15 E-value=0.00043 Score=73.90 Aligned_cols=63 Identities=29% Similarity=0.461 Sum_probs=57.8
Q ss_pred CCCeEEEcchhHHHH-HhccccccCceeeccCCccCCCEEEEEEcccCCcCCCCCcccccccccccCCCCCCCcccCCce
Q 009628 122 PPKEVIVSRKCAEAV-LRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGL 200 (530)
Q Consensus 122 ~~k~ViVd~~~~eAV-LrGA~v~aPGil~~~~~i~~Gd~VaV~~~~~~~~~~~~w~~~~~rg~~~~~~~~~~~~~~~~gv 200 (530)
....|+||..|++|+ .+||.|++|||++.+..|++||.|.|+ ++++.
T Consensus 279 ~~g~i~vd~gA~~al~~~g~sLl~~Gi~~v~g~f~~gd~V~i~--------------------------------~~~g~ 326 (372)
T PRK05429 279 PAGEIVVDAGAVKALLERGKSLLPAGVTAVEGDFSRGDVVRIV--------------------------------DPDGR 326 (372)
T ss_pred CCCeEEECccHHHHHHhcCCccCccchhheECcccCCCEEEEE--------------------------------CCCCC
Confidence 568999999999999 889999999999999999999999999 44578
Q ss_pred EEeecccccCcccccc
Q 009628 201 YIGQGTAMMSRAGIFR 216 (530)
Q Consensus 201 ~Vg~Gia~mSreelf~ 216 (530)
.++.|++.++.+++..
T Consensus 327 ~va~G~~~~~s~e~~~ 342 (372)
T PRK05429 327 EIARGLVNYSSDELRR 342 (372)
T ss_pred EEEEEEecCCHHHHHH
Confidence 8999999999998875
No 220
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.15 E-value=0.0061 Score=60.46 Aligned_cols=62 Identities=13% Similarity=0.078 Sum_probs=44.0
Q ss_pred HHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchh
Q 009628 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (530)
Q Consensus 253 ~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (530)
.....+..+..+|+|++.|.|..+.+++..- +.-+++.+|. +.-+..+++ .+.|+++.+|.+
T Consensus 92 ~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~f 153 (241)
T PF00891_consen 92 LLEAFDFSGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE------ADRVEFVPGDFF 153 (241)
T ss_dssp HHHHSTTTTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH------TTTEEEEES-TT
T ss_pred hhccccccCccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc------ccccccccccHH
Confidence 3455677788899999999999999998865 4579999999 444544444 456777777754
No 221
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.13 E-value=0.0038 Score=62.40 Aligned_cols=44 Identities=11% Similarity=0.011 Sum_probs=36.3
Q ss_pred CCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHH
Q 009628 258 DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQK 304 (530)
Q Consensus 258 dpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~ 304 (530)
.+.+|.+||+-.||.|--..+||.. .-.|+|+|.|+..++...+
T Consensus 40 ~~~~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~ 83 (226)
T PRK13256 40 NINDSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFS 83 (226)
T ss_pred CCCCCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHH
Confidence 3456789999999999999999984 2379999999999876643
No 222
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.12 E-value=0.0022 Score=65.22 Aligned_cols=79 Identities=20% Similarity=0.214 Sum_probs=61.6
Q ss_pred ceEEEeccch-HHHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEc
Q 009628 241 GEIFLQNLPS-IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKL 319 (530)
Q Consensus 241 G~i~lQd~~S-~v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~ 319 (530)
|.=|+.|..- .-.+.+.++++++.||++|+|.|+.|..|++.. .+|+|+|+++..+..+++... ...+++++..
T Consensus 9 GQnFL~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~ 83 (259)
T COG0030 9 GQNFLIDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFA--PYDNLTVING 83 (259)
T ss_pred ccccccCHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhcc--cccceEEEeC
Confidence 4444444332 235567788999999999999999999999853 579999999999888877655 3567999999
Q ss_pred chhHH
Q 009628 320 DALKA 324 (530)
Q Consensus 320 Da~k~ 324 (530)
|+++.
T Consensus 84 DaLk~ 88 (259)
T COG0030 84 DALKF 88 (259)
T ss_pred chhcC
Confidence 99873
No 223
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.0027 Score=62.54 Aligned_cols=64 Identities=20% Similarity=0.226 Sum_probs=52.3
Q ss_pred EeccchHHHH--HhcC--CCCCCeEEeeccCCChHHHHHHHHcCCCcEE-EEEeCCHHHHHHHHHHHHH
Q 009628 245 LQNLPSIVTA--HALD--PQKGERILDMCAAPGGKTTAIASLLRDEGEV-VAVDRSHNKVMDIQKLAAE 308 (530)
Q Consensus 245 lQd~~S~v~~--~~Ld--pqpGe~VLDmCAAPGgKT~~iA~lm~~~G~V-vA~D~s~~kv~~i~~~a~~ 308 (530)
--.+|+|-+. ..|+ .|||...||+++|+|-.|+..|.+++..|.+ +++|.-++-|+..+++...
T Consensus 62 ~iSAp~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k 130 (237)
T KOG1661|consen 62 TISAPHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDK 130 (237)
T ss_pred EEcchHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHh
Confidence 3456666544 4577 8999999999999999999999988888875 9999999988887777654
No 224
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.08 E-value=0.0014 Score=65.50 Aligned_cols=40 Identities=28% Similarity=0.355 Sum_probs=34.3
Q ss_pred CCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHH
Q 009628 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMD 301 (530)
Q Consensus 260 qpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~ 301 (530)
.+|.+|||++||||+.|..+++. +.+.|+|+|.+++++..
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~--ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK--GAKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHH
Confidence 46889999999999999999884 35789999999987654
No 225
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.04 E-value=0.004 Score=63.18 Aligned_cols=72 Identities=22% Similarity=0.298 Sum_probs=48.0
Q ss_pred CCCcccc-ccceEEEeccchHHHHHhcCCC--------CCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHH
Q 009628 232 LPSFYDV-LEGEIFLQNLPSIVTAHALDPQ--------KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDI 302 (530)
Q Consensus 232 lP~~~~~-~~G~i~lQd~~S~v~~~~Ldpq--------pGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i 302 (530)
.-..+++ ..|..|+-... -...+|... ...++||++||-|+-|..+|.+.+ +|+|.|.|..+..++
T Consensus 58 ~T~iNG~LgRG~MFvfS~~--Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~---~v~aTE~S~~Mr~rL 132 (265)
T PF05219_consen 58 KTDINGILGRGSMFVFSEE--QFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFK---EVYATEASPPMRWRL 132 (265)
T ss_pred HHhHhhhhcCCcEEEecHH--HHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcc---eEEeecCCHHHHHHH
Confidence 3334443 45766664432 233344322 457899999999999999999874 499999999875544
Q ss_pred HHHHHHhCCC
Q 009628 303 QKLAAEMGLK 312 (530)
Q Consensus 303 ~~~a~~~gl~ 312 (530)
++.|.+
T Consensus 133 ----~~kg~~ 138 (265)
T PF05219_consen 133 ----SKKGFT 138 (265)
T ss_pred ----HhCCCe
Confidence 444554
No 226
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=97.02 E-value=0.0018 Score=67.33 Aligned_cols=57 Identities=19% Similarity=0.332 Sum_probs=43.3
Q ss_pred hHHHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhC
Q 009628 250 SIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG 310 (530)
Q Consensus 250 S~v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~g 310 (530)
|+++-... ++++.+|||+||-||-..-.-. ..-+.+|++|++.--+..++++.+.|.
T Consensus 108 s~LI~~y~--~~~~~~~~LgCGKGGDLlKw~k--AgI~~~igiDIAevSI~qa~~RYrdm~ 164 (389)
T KOG1975|consen 108 SVLINLYT--KRGDDVLDLGCGKGGDLLKWDK--AGIGEYIGIDIAEVSINQARKRYRDMK 164 (389)
T ss_pred HHHHHHHh--ccccccceeccCCcccHhHhhh--hcccceEeeehhhccHHHHHHHHHHHH
Confidence 34444333 6899999999999997765433 234789999999999999998888763
No 227
>KOG2730 consensus Methylase [General function prediction only]
Probab=96.99 E-value=0.0017 Score=64.23 Aligned_cols=62 Identities=27% Similarity=0.221 Sum_probs=54.6
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-eEEEEcchhHHH
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALKAV 325 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~-i~~~~~Da~k~v 325 (530)
.-++|+|..||-||-|++.|.. -..|+|+|+++-|+...++|++-.|+.. |+++++|.+..+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~---~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~ 156 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQ---GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLA 156 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHh---CCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHH
Confidence 4578999999999999988863 2479999999999999999999999976 999999998754
No 228
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.96 E-value=0.0023 Score=67.42 Aligned_cols=35 Identities=37% Similarity=0.392 Sum_probs=30.1
Q ss_pred CCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCH
Q 009628 259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296 (530)
Q Consensus 259 pqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~ 296 (530)
+.+|.++||+||+|||+|-.+++. ..+|+|+|..+
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~ 243 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGP 243 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechh
Confidence 468999999999999999998874 35999999554
No 229
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=96.95 E-value=0.00053 Score=74.88 Aligned_cols=62 Identities=23% Similarity=0.202 Sum_probs=47.7
Q ss_pred CCeEEeeccCCChHHHHHHHHc---CCCcEEEEEeCCHHHHHHHHHHHHHhCC-CceEEEEcchhH
Q 009628 262 GERILDMCAAPGGKTTAIASLL---RDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALK 323 (530)
Q Consensus 262 Ge~VLDmCAAPGgKT~~iA~lm---~~~G~VvA~D~s~~kv~~i~~~a~~~gl-~~i~~~~~Da~k 323 (530)
+-.|||+|||.|--....++.. +..-+|+|+|.+++.+..+++++++.|. +.|++++.|+..
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~ 252 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMRE 252 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTT
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccC
Confidence 5679999999999876555432 3456999999999999999888888898 459999988653
No 230
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=96.94 E-value=0.0057 Score=60.16 Aligned_cols=62 Identities=24% Similarity=0.309 Sum_probs=50.1
Q ss_pred CCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCce-EEEEcchh
Q 009628 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCI-TTYKLDAL 322 (530)
Q Consensus 260 qpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i-~~~~~Da~ 322 (530)
..+.+||+++||+|-.+.++|+.|.. -.-.--|.+.+....|+..+++.|++++ ....+|+.
T Consensus 24 ~~~~~vLEiaSGtGqHa~~FA~~lP~-l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~ 86 (204)
T PF06080_consen 24 DSGTRVLEIASGTGQHAVYFAQALPH-LTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVS 86 (204)
T ss_pred ccCceEEEEcCCccHHHHHHHHHCCC-CEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecC
Confidence 34447999999999999999999964 5677789999999999999999998874 34555543
No 231
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.86 E-value=0.013 Score=62.18 Aligned_cols=74 Identities=22% Similarity=0.070 Sum_probs=56.4
Q ss_pred hHHHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhHH
Q 009628 250 SIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (530)
Q Consensus 250 S~v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k~ 324 (530)
|+++..++.-.-..+|||.-+|+|--++-+|--.... +|++.|+|++.++.|++|++.+.-..+..+..|+-..
T Consensus 41 sV~~l~~~~~~~~~~v~DalsatGiRgIRya~E~~~~-~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~l 114 (380)
T COG1867 41 SVLVLKAFGKLLPKRVLDALSATGIRGIRYAVETGVV-KVVLNDISPKAVELIKENVRLNSGEDAEVINKDANAL 114 (380)
T ss_pred hHHHHHHhhccCCeEEeecccccchhHhhhhhhcCcc-EEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHH
Confidence 4444445542226799999999999999888776554 8999999999999999999998545566666776543
No 232
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=96.85 E-value=0.0044 Score=62.18 Aligned_cols=53 Identities=23% Similarity=0.219 Sum_probs=38.5
Q ss_pred chHHHHHhcCCCCCC-eEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHH
Q 009628 249 PSIVTAHALDPQKGE-RILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQK 304 (530)
Q Consensus 249 ~S~v~~~~LdpqpGe-~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~ 304 (530)
|+-+.-......+++ .++|++||+|--+..+|... -+|||.|.|..++..+++
T Consensus 20 Ptdw~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~---k~VIatD~s~~mL~~a~k 73 (261)
T KOG3010|consen 20 PTDWFKKIASRTEGHRLAWDVGTGNGQAARGIAEHY---KEVIATDVSEAMLKVAKK 73 (261)
T ss_pred cHHHHHHHHhhCCCcceEEEeccCCCcchHHHHHhh---hhheeecCCHHHHHHhhc
Confidence 455555555556676 79999999995555666664 369999999999875543
No 233
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=96.84 E-value=0.00073 Score=58.42 Aligned_cols=58 Identities=26% Similarity=0.282 Sum_probs=15.3
Q ss_pred EeeccCCChHHHHHHHHcCCCc--EEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEEcchhHH
Q 009628 266 LDMCAAPGGKTTAIASLLRDEG--EVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALKA 324 (530)
Q Consensus 266 LDmCAAPGgKT~~iA~lm~~~G--~VvA~D~s~~kv~~i~~~a~~~gl~-~i~~~~~Da~k~ 324 (530)
|+++++-|.-|..|++.+++.+ +++++|.... ....++.+++.++. .+++++.|....
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~ 61 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDF 61 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHH
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHH
Confidence 5678899999999999887765 8999999985 33344555556664 488888877553
No 234
>PRK04270 H/ACA RNA-protein complex component Cbf5p; Reviewed
Probab=96.80 E-value=0.0017 Score=67.53 Aligned_cols=73 Identities=32% Similarity=0.586 Sum_probs=65.1
Q ss_pred CCCeEEEcchhHHHHHhccccccCceeeccCCccCCCEEEEEEcccCCcCCCCCcccccccccccCCCCCCCcccCCceE
Q 009628 122 PPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLY 201 (530)
Q Consensus 122 ~~k~ViVd~~~~eAVLrGA~v~aPGil~~~~~i~~Gd~VaV~~~~~~~~~~~~w~~~~~rg~~~~~~~~~~~~~~~~gv~ 201 (530)
+.+.|+|+..+++++++|+.+++||+..++..++.||.|.|+ ...+.+
T Consensus 224 ~LP~V~Lde~aa~~I~nG~~L~~~gi~~~~~~~~~gd~V~I~--------------------------------~~~G~~ 271 (300)
T PRK04270 224 HLPKIIIKDSAVDAIAHGAPLYAPGIAKLEKGIKKGDLVAVF--------------------------------TLKGEL 271 (300)
T ss_pred hCCceEECHHHHHHHHcCCccccCCceecccccCCCCEEEEE--------------------------------eCCCcE
Confidence 568999999999999999999999999888888899998888 224679
Q ss_pred EeecccccCcccccccCCceeeecC
Q 009628 202 IGQGTAMMSRAGIFRASEGIAVDMH 226 (530)
Q Consensus 202 Vg~Gia~mSreelf~~p~GlaV~~~ 226 (530)
+|.|.+.++.+++++..+|++|++.
T Consensus 272 LAIG~~~~ss~el~~~~kG~~vk~~ 296 (300)
T PRK04270 272 VALGKALMDSDEILKAEKGIVVDLE 296 (300)
T ss_pred EEEEEEccCHHHHHhcCCceEEEEE
Confidence 9999999999999999999999865
No 235
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=96.74 E-value=0.018 Score=55.07 Aligned_cols=64 Identities=23% Similarity=0.293 Sum_probs=53.1
Q ss_pred HhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 255 ~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
...||..|--||.++.|+|-.|-+|.+.+-....++++|.|+.-+..+.+.- ..+.++.+|+..
T Consensus 42 s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-----p~~~ii~gda~~ 105 (194)
T COG3963 42 SVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-----PGVNIINGDAFD 105 (194)
T ss_pred hccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-----CCccccccchhh
Confidence 3468899999999999999999999998877789999999999988776542 345677888765
No 236
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.71 E-value=0.011 Score=61.30 Aligned_cols=70 Identities=20% Similarity=0.270 Sum_probs=61.7
Q ss_pred HHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 253 ~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
+...|.++|+...+|..-|-||.+.+|...+.+.|+++|+|+++..+...++..+.++ ..+++++.....
T Consensus 15 ~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~-~r~~~v~~~F~~ 84 (314)
T COG0275 15 VVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD-GRVTLVHGNFAN 84 (314)
T ss_pred HHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC-CcEEEEeCcHHH
Confidence 5678999999999999999999999999999889999999999999999999888876 557777766543
No 237
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.65 E-value=0.0027 Score=66.19 Aligned_cols=69 Identities=19% Similarity=0.275 Sum_probs=47.2
Q ss_pred HHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 253 ~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
+...|.++|+..++|+.-|-||.|.+|.+.+.+ |+|+|+|+++..+...+++.+.. -..+.++..+...
T Consensus 12 vl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~~-~~r~~~~~~~F~~ 80 (310)
T PF01795_consen 12 VLEALNPKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKKF-DDRFIFIHGNFSN 80 (310)
T ss_dssp HHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCCC-CTTEEEEES-GGG
T ss_pred HHHhhCcCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhhc-cceEEEEeccHHH
Confidence 456778999999999999999999999998877 99999999999887665544433 2347777666543
No 238
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.57 E-value=0.035 Score=58.27 Aligned_cols=93 Identities=13% Similarity=0.083 Sum_probs=59.4
Q ss_pred cccCCCccccccceEEEeccchHHHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCC---cEEEEEeCCHHHHHHHHHH
Q 009628 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDE---GEVVAVDRSHNKVMDIQKL 305 (530)
Q Consensus 229 v~~lP~~~~~~~G~i~lQd~~S~v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~---G~VvA~D~s~~kv~~i~~~ 305 (530)
+..+|.|.-..+-.-.+|.-.+-++.++ .++..|+|+|||.|.||..|...+... -.-+++|+|...+....+.
T Consensus 47 It~lpEYYptr~E~~iL~~~~~~Ia~~i---~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~ 123 (319)
T TIGR03439 47 ITYSPEYYLTNDEIEILKKHSSDIAASI---PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAE 123 (319)
T ss_pred HHcCCccCChHHHHHHHHHHHHHHHHhc---CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHh
Confidence 3456665422221222344344444433 467799999999999999988777432 3689999999999888777
Q ss_pred HHHhCCCce--EEEEcchhHH
Q 009628 306 AAEMGLKCI--TTYKLDALKA 324 (530)
Q Consensus 306 a~~~gl~~i--~~~~~Da~k~ 324 (530)
++.-.++.+ ..+.+|....
T Consensus 124 L~~~~~p~l~v~~l~gdy~~~ 144 (319)
T TIGR03439 124 LPLGNFSHVRCAGLLGTYDDG 144 (319)
T ss_pred hhhccCCCeEEEEEEecHHHH
Confidence 763334443 4466666543
No 239
>TIGR00425 CBF5 rRNA pseudouridine synthase, putative. This family, found in archaea and eukaryotes, includes the only archaeal proteins markedly similar to bacterial TruB, the tRNA pseudouridine 55 synthase. However, among two related yeast proteins, the archaeal set matches yeast YLR175w far better than YNL292w. The first, termed centromere/microtubule binding protein 5 (CBF5), is an apparent rRNA pseudouridine synthase, while the second is the exclusive tRNA pseudouridine 55 synthase for both cytosolic and mitochondrial compartments. It is unclear whether archaeal proteins found by this model modify tRNA, rRNA, or both.
Probab=96.53 E-value=0.0033 Score=65.94 Aligned_cols=74 Identities=32% Similarity=0.488 Sum_probs=64.9
Q ss_pred CCCeEEEcchhHHHHHhccccccCceeeccCCccCCCEEEEEEcccCCcCCCCCcccccccccccCCCCCCCcccCCceE
Q 009628 122 PPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLY 201 (530)
Q Consensus 122 ~~k~ViVd~~~~eAVLrGA~v~aPGil~~~~~i~~Gd~VaV~~~~~~~~~~~~w~~~~~rg~~~~~~~~~~~~~~~~gv~ 201 (530)
+.+.|+|+..+++.+++|+.++.||+..++..++.|+.|.|+ ...+.+
T Consensus 236 ~lP~V~Vd~~~a~~I~NG~~I~~pgv~~~d~~i~~gd~V~V~--------------------------------~~~G~~ 283 (322)
T TIGR00425 236 HLKRVVVKDSAVDAICHGADLMVRGIARLEKGIEKGDTVAVI--------------------------------TLKGEA 283 (322)
T ss_pred hCCceEeCHHHHHHHHCCCccccccccccccccCCCCEEEEE--------------------------------ECCCEE
Confidence 568899999999999999999999999888778889988888 234679
Q ss_pred EeecccccCcccccccCCceeeecCC
Q 009628 202 IGQGTAMMSRAGIFRASEGIAVDMHN 227 (530)
Q Consensus 202 Vg~Gia~mSreelf~~p~GlaV~~~~ 227 (530)
+|+|.+.++.++++...+|++|+...
T Consensus 284 LAIGea~~s~~ei~~~~kG~vV~~~~ 309 (322)
T TIGR00425 284 VAVGIALMSTKDIANADKGVVADVKR 309 (322)
T ss_pred EEEEEEecCHHHHhhcCCcEEEEEEE
Confidence 99999999999999988999998653
No 240
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=96.47 E-value=0.002 Score=64.57 Aligned_cols=66 Identities=17% Similarity=0.255 Sum_probs=46.0
Q ss_pred cceEEEeccchHHHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHH
Q 009628 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRD-EGEVVAVDRSHNKVMDIQKLAAE 308 (530)
Q Consensus 240 ~G~i~lQd~~S~v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~-~G~VvA~D~s~~kv~~i~~~a~~ 308 (530)
+-...+|+.|..++..- ++-++||.++||-|.-..-|.+--.+ +-.|+|+|-|++.+..++++...
T Consensus 53 dR~wL~~Efpel~~~~~---~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~ 119 (264)
T KOG2361|consen 53 DRNWLLREFPELLPVDE---KSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGY 119 (264)
T ss_pred hhHHHHHhhHHhhCccc---cChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhcccc
Confidence 44455566665443322 22238999999999998888775443 25899999999999888776543
No 241
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=96.38 E-value=0.0089 Score=56.94 Aligned_cols=50 Identities=24% Similarity=0.292 Sum_probs=37.5
Q ss_pred CCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhC
Q 009628 259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG 310 (530)
Q Consensus 259 pqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~g 310 (530)
..+|.+||+++||.|--+..+|.+. ...+|++-|.++ -+..++.|++.++
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~ 92 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNG 92 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT-
T ss_pred hcCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhcc
Confidence 3578899999999998888777763 457999999999 8888899988776
No 242
>COG1370 Prefoldin, molecular chaperone implicated in de novo protein folding, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.0072 Score=56.22 Aligned_cols=75 Identities=27% Similarity=0.388 Sum_probs=68.1
Q ss_pred CCCCCeEEEcchhHHHHHhccccccCceeeccCCccCCCEEEEEEcccCCcCCCCCcccccccccccCCCCCCCcccCCc
Q 009628 120 DKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSG 199 (530)
Q Consensus 120 ~~~~k~ViVd~~~~eAVLrGA~v~aPGil~~~~~i~~Gd~VaV~~~~~~~~~~~~w~~~~~rg~~~~~~~~~~~~~~~~g 199 (530)
..+.=.|+|.+.+++.+-.|=+||+.=|+.+++++++||+|.|. +..+
T Consensus 77 ~~P~~RVvV~~E~e~f~r~Gk~VFaKfVi~~D~~iR~~dEvlVV--------------------------------ne~d 124 (155)
T COG1370 77 PFPRMRVVVSDEAEEFVRKGKSVFAKFVIDVDEEIRAGDEVLVV--------------------------------NEDD 124 (155)
T ss_pred CCCceEEEeccccHHHHHhccchhhhheeccCcccCCCCeEEEE--------------------------------CCCC
Confidence 33556899999999999999999999999999999999999999 5567
Q ss_pred eEEeecccccCcccccccCCceeeecC
Q 009628 200 LYIGQGTAMMSRAGIFRASEGIAVDMH 226 (530)
Q Consensus 200 v~Vg~Gia~mSreelf~~p~GlaV~~~ 226 (530)
..++.|.+.+|..+|.....|.+|+..
T Consensus 125 ~LlAvGra~ls~~E~~~~~~G~AVkVr 151 (155)
T COG1370 125 ELLAVGRALLSGAEMREFERGMAVKVR 151 (155)
T ss_pred cEEEeeeEeecHHHHhhccccEEEEEe
Confidence 899999999999999998999998864
No 243
>TIGR01027 proB glutamate 5-kinase. Bacterial ProB proteins hit the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues of this model. The noise cutoff is set low enough to hit delta 1-pyrroline-5-carboxylate synthetase and other partial matches to this family.
Probab=96.31 E-value=0.0048 Score=65.76 Aligned_cols=63 Identities=25% Similarity=0.468 Sum_probs=56.4
Q ss_pred CCCeEEEcchhHHHHHh-ccccccCceeeccCCccCCCEEEEEEcccCCcCCCCCcccccccccccCCCCCCCcccCCce
Q 009628 122 PPKEVIVSRKCAEAVLR-GAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGL 200 (530)
Q Consensus 122 ~~k~ViVd~~~~eAVLr-GA~v~aPGil~~~~~i~~Gd~VaV~~~~~~~~~~~~w~~~~~rg~~~~~~~~~~~~~~~~gv 200 (530)
..-.|+||..|.+|+.. |+.++++||++.+..|++||.|.|. ++.+.
T Consensus 271 ~~G~i~vD~gA~~al~~~g~sLl~~Gi~~v~g~F~~gd~v~i~--------------------------------~~~~~ 318 (363)
T TIGR01027 271 PAGEITVDAGAEEALLERGKSLLPAGIVGVEGNFSRGEVVEIL--------------------------------NPEGQ 318 (363)
T ss_pred cCCeEEEChhHHHHHHhcCCccCCccceeeECcccCCCEEEEE--------------------------------CCCCC
Confidence 45689999999999986 8999999999999999999999999 34578
Q ss_pred EEeecccccCcccccc
Q 009628 201 YIGQGTAMMSRAGIFR 216 (530)
Q Consensus 201 ~Vg~Gia~mSreelf~ 216 (530)
.++.|++..+.+++.+
T Consensus 319 ~ia~g~~~y~s~~~~~ 334 (363)
T TIGR01027 319 DIGRGLVNYSSDELEK 334 (363)
T ss_pred EEEEEEecCCHHHHHH
Confidence 8999999999888764
No 244
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=96.26 E-value=0.016 Score=52.33 Aligned_cols=57 Identities=16% Similarity=0.154 Sum_probs=49.8
Q ss_pred eEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcch
Q 009628 264 RILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321 (530)
Q Consensus 264 ~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da 321 (530)
.|||++|+.|..+..++.. .++++|+++|.++.....++++++.+++.+++++....
T Consensus 1 ~vlDiGa~~G~~~~~~~~~-~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al 57 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARK-GAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAV 57 (143)
T ss_pred CEEEccCCccHHHHHHHHh-CCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeee
Confidence 4899999999999988875 45579999999999999999999999988888887654
No 245
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=96.24 E-value=0.021 Score=60.16 Aligned_cols=57 Identities=26% Similarity=0.226 Sum_probs=46.0
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-eEEEEcc
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLD 320 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~-i~~~~~D 320 (530)
.|..|||++||+|-.++..|.. +.-.|+|+|-|.-. ...++.++.+++.. |+++++.
T Consensus 60 ~dK~VlDVGcGtGILS~F~akA--GA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gk 117 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKA--GARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGK 117 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHh--CcceEEEEechHHH-HHHHHHHHhcCccceEEEeecc
Confidence 5889999999999888877763 35699999998754 77889999999987 6666554
No 246
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=96.23 E-value=0.011 Score=59.80 Aligned_cols=67 Identities=22% Similarity=0.270 Sum_probs=55.9
Q ss_pred HHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhHH
Q 009628 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (530)
Q Consensus 253 ~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k~ 324 (530)
.+..+++.++..|||+++|+|..|..|+... ..|+|+|.++..+..+++... .-++++++..|+++.
T Consensus 22 Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~--~~~~~~vi~~D~l~~ 88 (262)
T PF00398_consen 22 IVDALDLSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA--SNPNVEVINGDFLKW 88 (262)
T ss_dssp HHHHHTCGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT--TCSSEEEEES-TTTS
T ss_pred HHHhcCCCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh--hcccceeeecchhcc
Confidence 4456788899999999999999999998865 689999999998888877554 346799999999874
No 247
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=96.19 E-value=0.0086 Score=58.20 Aligned_cols=58 Identities=16% Similarity=0.091 Sum_probs=49.7
Q ss_pred CeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 263 ERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 263 e~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
+.+.|++||+|-.+.-.|.. .-+|+|+++++.+...+.+|.+-.|+.+++++..||..
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~---A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~ 91 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA---AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARD 91 (252)
T ss_pred hceeeccCCcchHHHHHHhh---hceEEEEecCcHHHHHhhhcCCCCCCcceEEEeccccc
Confidence 68999999999887765553 45899999999999888888888899999999999864
No 248
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=96.18 E-value=0.076 Score=54.83 Aligned_cols=67 Identities=15% Similarity=0.144 Sum_probs=48.7
Q ss_pred hcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhC----CCceEEEEcchhHH
Q 009628 256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG----LKCITTYKLDALKA 324 (530)
Q Consensus 256 ~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~g----l~~i~~~~~Da~k~ 324 (530)
...++| .+||=++=|.||.+-.+.... +--+++.+|+++.-++..++...... -+.++.+-.|+.+.
T Consensus 72 ~ah~~p-k~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~ 142 (282)
T COG0421 72 LAHPNP-KRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEF 142 (282)
T ss_pred hhCCCC-CeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHH
Confidence 345667 699999999999999888764 35699999999998887777665543 12245555555554
No 249
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=96.01 E-value=0.028 Score=58.13 Aligned_cols=42 Identities=24% Similarity=0.253 Sum_probs=33.2
Q ss_pred CeEEeeccCCChHHHHHHHHcCC-------CcEEEEEeCCHHHHHHHHH
Q 009628 263 ERILDMCAAPGGKTTAIASLLRD-------EGEVVAVDRSHNKVMDIQK 304 (530)
Q Consensus 263 e~VLDmCAAPGgKT~~iA~lm~~-------~G~VvA~D~s~~kv~~i~~ 304 (530)
-+||..+|++|-=.--||.++.+ +-+|+|.|+|...++.+++
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~ 165 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARS 165 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHh
Confidence 69999999999877666665532 2479999999999877654
No 250
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=96.00 E-value=0.016 Score=57.19 Aligned_cols=56 Identities=16% Similarity=0.098 Sum_probs=40.6
Q ss_pred CeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceE-EEEcc
Q 009628 263 ERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCIT-TYKLD 320 (530)
Q Consensus 263 e~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~-~~~~D 320 (530)
-.||.++||||.---..- |.+..+|+++|-++++-+-+.+.+++..-..+. ++.+|
T Consensus 78 ~~vLEvgcGtG~Nfkfy~--~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ 134 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYP--WKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVAD 134 (252)
T ss_pred cceEEecccCCCCccccc--CCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeec
Confidence 358999999996432221 345679999999999998888888887555555 44444
No 251
>COG1549 Queuine tRNA-ribosyltransferases, contain PUA domain [Translation, ribosomal structure and biogenesis]
Probab=95.98 E-value=0.0062 Score=66.39 Aligned_cols=180 Identities=20% Similarity=0.297 Sum_probs=100.8
Q ss_pred CCcccccccccCHHHHH--------HHHHh-h--------chhhHHHHHHHhcCCCCccEEEeecCCCCHHHHHHHHHH-
Q 009628 5 GRYSYSPLLRWNPQVEE--------YFIRA-Y--------GADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLA- 66 (530)
Q Consensus 5 ~~~~~~~~~~~~~~v~~--------~l~~~-~--------~~~~~~~~~~~l~~pp~~~~iRVNTl~~~~~~~~~~L~~- 66 (530)
.-|.+-+.-.|..|=.+ ||.+. | |.++.+..++.+-.+--+|+.-=++ +..+.++.|++
T Consensus 296 ~~YDi~VtG~WseEE~~~v~~~l~~yl~k~~~~~vIAhv~gr~~~E~~~e~v~~~v~~t~~~s~~---~sreal~~l~~~ 372 (519)
T COG1549 296 AHYDIPVTGHWSEEEKEFVAELLKSYLEKTDYRKVIAHVPGREAVERVLEAVDIDVVFTARKSSP---TSREALKNLKNT 372 (519)
T ss_pred cccCccccccccHHHHHHHHHHHHHHhhhcCCceEEEEcCchhHHHHHhhccCCceEEEecCCCC---cCHHHHHHHHHH
Confidence 44666666678765332 22221 1 5578999999999999999887743 23455555565
Q ss_pred --HHHhcCCCccccccccccccCCCcccccc------CCCCCceEEEeCCCCccccC-CCCCCCCC-CeEEEcchhHHHH
Q 009628 67 --IIQNSGSSEADVASSVKGRLQNGTISESQ------IPGLEYVVFVKGSGPHTIDY-GYEPDKPP-KEVIVSRKCAEAV 136 (530)
Q Consensus 67 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~l~i~~~gp~~~~~-~~~~~~~~-k~ViVd~~~~eAV 136 (530)
.|++........ .. . +.. ..+..++ +-.++| .|.+.+|...-+ +.+.+.-. ..+.+...-|+.+
T Consensus 373 ~~~l~~k~~~~~~~-~~-~-~~~-~~v~~yqfG~g~~~~~~~d--~v~g~~~~~~~~~n~ql~~~~~~~ls~t~~g~~~~ 446 (519)
T COG1549 373 LKELESKEKIYPRS-RR-Y-HNL-RAVARYQFGYGAGRNVLED--LVVGRYPKLFLLINEQLGTFTPNLLSLTPFGAELL 446 (519)
T ss_pred HHHHhhhhhcchHH-HH-H-HHH-HhhhheeccccchhccCch--hhccccceEEEeccceeecccccceeccHhHhhhh
Confidence 333321100000 00 0 000 0011111 223444 333333332211 11111111 1222333444422
Q ss_pred H------------hccccccCceeeccCCccCCCEEEEEEcccCCcCCCCCcccccccccccCCCCCCCcccCCceEEee
Q 009628 137 L------------RGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQ 204 (530)
Q Consensus 137 L------------rGA~v~aPGil~~~~~i~~Gd~VaV~~~~~~~~~~~~w~~~~~rg~~~~~~~~~~~~~~~~gv~Vg~ 204 (530)
+ --.+||+||+++|+..|..||+|-|+ ..+...|+
T Consensus 447 ~~~~~~VEId~f~~~g~v~a~GV~da~edIrpnDeV~vv---------------------------------~~~~v~gV 493 (519)
T COG1549 447 YGGIYWVEIDDFIPRGSVFAPGVVDADEDIRPNDEVVVV---------------------------------HGGEVRGV 493 (519)
T ss_pred hcCeeEEEcCCccccccccccccccCCCCCCcCCEEEEE---------------------------------eCCeEEEE
Confidence 2 12357999999999999999999888 13568899
Q ss_pred cccccCcccccccCCceeeecC
Q 009628 205 GTAMMSRAGIFRASEGIAVDMH 226 (530)
Q Consensus 205 Gia~mSreelf~~p~GlaV~~~ 226 (530)
|++.|+..+|...++|++|+.-
T Consensus 494 GrA~msg~eM~~akkGiaV~VR 515 (519)
T COG1549 494 GRAVMSGREMVEAKKGIAVRVR 515 (519)
T ss_pred eeeecChHHhcccCCceEEEEE
Confidence 9999999999999999999864
No 252
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.95 E-value=0.012 Score=58.87 Aligned_cols=44 Identities=23% Similarity=0.274 Sum_probs=34.7
Q ss_pred cCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHH
Q 009628 257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQ 303 (530)
Q Consensus 257 LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~ 303 (530)
++..+-.++||++||+|-..-.|-.+. .+++++|+|.++++...
T Consensus 121 ~~~g~F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~ 164 (287)
T COG4976 121 ADLGPFRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAH 164 (287)
T ss_pred ccCCccceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHH
Confidence 445556899999999998887776653 46999999999986543
No 253
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=95.94 E-value=0.04 Score=56.36 Aligned_cols=65 Identities=20% Similarity=0.218 Sum_probs=53.3
Q ss_pred hcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-eEEEEcchhH
Q 009628 256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALK 323 (530)
Q Consensus 256 ~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~-i~~~~~Da~k 323 (530)
..+.+|++.||.++=|||.-|..|.+. ..+|+|+|.++.++..+.++.+-..... .+++.+|.+|
T Consensus 53 ka~~k~tD~VLEvGPGTGnLT~~lLe~---~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK 118 (315)
T KOG0820|consen 53 KADLKPTDVVLEVGPGTGNLTVKLLEA---GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLK 118 (315)
T ss_pred ccCCCCCCEEEEeCCCCCHHHHHHHHh---cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEeccccc
Confidence 346789999999999999999988775 3589999999999999998877544333 7777777766
No 254
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.78 E-value=0.055 Score=57.18 Aligned_cols=51 Identities=25% Similarity=0.354 Sum_probs=38.4
Q ss_pred cCCCCCCeEEeeccC-CChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 009628 257 LDPQKGERILDMCAA-PGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC 313 (530)
Q Consensus 257 LdpqpGe~VLDmCAA-PGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~ 313 (530)
.+.+||++|+=.++| -|.-+.++|..|. .+|+|+|+|++|.+ .|+++|.+.
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e----~a~~lGAd~ 213 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLE----LAKKLGADH 213 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHH----HHHHhCCcE
Confidence 567899999988887 3344556666664 79999999999975 556677664
No 255
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=95.61 E-value=0.037 Score=50.75 Aligned_cols=62 Identities=26% Similarity=0.321 Sum_probs=50.3
Q ss_pred CCCCCeEEeeccCCChHHHHHHHHcC---CCcEEEEEeCCHHHHHHHHHHHHHhC--C-CceEEEEcc
Q 009628 259 PQKGERILDMCAAPGGKTTAIASLLR---DEGEVVAVDRSHNKVMDIQKLAAEMG--L-KCITTYKLD 320 (530)
Q Consensus 259 pqpGe~VLDmCAAPGgKT~~iA~lm~---~~G~VvA~D~s~~kv~~i~~~a~~~g--l-~~i~~~~~D 320 (530)
..+..+|+|+|||-|--+..+|.++. ..-.|+++|.++..+..+.+++++.+ + ..+.+...+
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 90 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGD 90 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccc
Confidence 37788999999999999999999653 44699999999999999999999988 4 334444443
No 256
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=95.59 E-value=0.19 Score=41.95 Aligned_cols=38 Identities=26% Similarity=0.249 Sum_probs=29.2
Q ss_pred EEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHH
Q 009628 265 ILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQ 303 (530)
Q Consensus 265 VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~ 303 (530)
+||++||+|..+ .++.+......++++|.+...+...+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~ 89 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALAR 89 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHH
Confidence 999999999988 55554433238999999998887733
No 257
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=95.47 E-value=0.047 Score=54.23 Aligned_cols=43 Identities=26% Similarity=0.238 Sum_probs=35.3
Q ss_pred cCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHH
Q 009628 257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDI 302 (530)
Q Consensus 257 LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i 302 (530)
+..+++.+||+-+||.|--...||+. .-.|+|+|.|+..++..
T Consensus 33 l~~~~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~ 75 (218)
T PF05724_consen 33 LALKPGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQA 75 (218)
T ss_dssp HTTSTSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHH
T ss_pred cCCCCCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHH
Confidence 34678899999999999999888873 24899999999988765
No 258
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=95.40 E-value=0.029 Score=57.36 Aligned_cols=41 Identities=17% Similarity=0.164 Sum_probs=33.4
Q ss_pred eEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHH
Q 009628 264 RILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLA 306 (530)
Q Consensus 264 ~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a 306 (530)
+|+|+|||.||-+..+..+ +--.|+|+|+++..++..++|.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~--G~~~v~a~e~~~~a~~~~~~N~ 42 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA--GFEIVAANEIDKSAAETYEANF 42 (275)
T ss_pred cEEEEccCcchHHHHHHHc--CCEEEEEEeCCHHHHHHHHHhC
Confidence 6999999999998877653 2336889999999988877764
No 259
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=95.30 E-value=0.18 Score=55.96 Aligned_cols=67 Identities=15% Similarity=0.086 Sum_probs=43.9
Q ss_pred cceEEEeccchHHHHHhcCCC--CCCeEEeeccCCChHHHHHHHHcC---CCcEEEEEeCCHHHHHHHHHHH
Q 009628 240 EGEIFLQNLPSIVTAHALDPQ--KGERILDMCAAPGGKTTAIASLLR---DEGEVVAVDRSHNKVMDIQKLA 306 (530)
Q Consensus 240 ~G~i~lQd~~S~v~~~~Ldpq--pGe~VLDmCAAPGgKT~~iA~lm~---~~G~VvA~D~s~~kv~~i~~~a 306 (530)
.|.++.-..-+.+.+..++++ |++.|.|||||+||.-......++ ..-.+++.+...+.....+.++
T Consensus 194 ~g~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm 265 (501)
T TIGR00497 194 GGEFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNM 265 (501)
T ss_pred CceeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHH
Confidence 466666444445556677776 778999999999998765444332 1235788888877665444443
No 260
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=95.27 E-value=0.042 Score=55.21 Aligned_cols=51 Identities=25% Similarity=0.252 Sum_probs=34.5
Q ss_pred HHHHhcCCCCCC--eEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHH
Q 009628 252 VTAHALDPQKGE--RILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKL 305 (530)
Q Consensus 252 v~~~~LdpqpGe--~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~ 305 (530)
..+.+..+++|. +|||..||-|.=+..+|.+ + ++|+++|+|+--...++.-
T Consensus 64 ~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~-G--~~V~~lErspvia~Ll~dG 116 (234)
T PF04445_consen 64 PLAKAVGLKPGMRPSVLDATAGLGRDAFVLASL-G--CKVTGLERSPVIAALLKDG 116 (234)
T ss_dssp HHHHHTT-BTTB---EEETT-TTSHHHHHHHHH-T----EEEEE--HHHHHHHHHH
T ss_pred HHHHHhCCCCCCCCEEEECCCcchHHHHHHHcc-C--CeEEEEECCHHHHHHHHHH
Confidence 556677777775 8999999999999999875 3 6899999998766555433
No 261
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=95.07 E-value=0.013 Score=57.33 Aligned_cols=43 Identities=21% Similarity=0.203 Sum_probs=30.6
Q ss_pred CCeEEeeccCCChHHHHHHHHcCC-----C---cEEEEEeCCHHHHHHHHH
Q 009628 262 GERILDMCAAPGGKTTAIASLLRD-----E---GEVVAVDRSHNKVMDIQK 304 (530)
Q Consensus 262 Ge~VLDmCAAPGgKT~~iA~lm~~-----~---G~VvA~D~s~~kv~~i~~ 304 (530)
--+||.++|++|-=+--||.++.+ . -+|+|.|+|+..++.+++
T Consensus 32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~ 82 (196)
T PF01739_consen 32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARA 82 (196)
T ss_dssp -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHH
T ss_pred CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHh
Confidence 458999999999877666666543 2 399999999988876543
No 262
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=95.01 E-value=0.2 Score=49.36 Aligned_cols=58 Identities=19% Similarity=0.170 Sum_probs=46.5
Q ss_pred EEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-eEEEEcchhH
Q 009628 265 ILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALK 323 (530)
Q Consensus 265 VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~-i~~~~~Da~k 323 (530)
|.|+||=-|--..+|++- +..-.++|+|+++.=+..++++.++.|+.. |++...|.+.
T Consensus 1 vaDIGtDHgyLpi~L~~~-~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~ 59 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKN-GKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLE 59 (205)
T ss_dssp EEEET-STTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGG
T ss_pred CceeccchhHHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccc
Confidence 689999999988888772 223479999999999999999999999866 8888888765
No 263
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=94.95 E-value=0.039 Score=56.17 Aligned_cols=48 Identities=25% Similarity=0.217 Sum_probs=32.4
Q ss_pred CCCCCeEEeeccCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHh
Q 009628 259 PQKGERILDMCAAPGGKTTAIASLL-RDEGEVVAVDRSHNKVMDIQKLAAEM 309 (530)
Q Consensus 259 pqpGe~VLDmCAAPGgKT~~iA~lm-~~~G~VvA~D~s~~kv~~i~~~a~~~ 309 (530)
-..|+++||++||| |.+-+.-+ .---+|+..|.++.-++.+++..+.-
T Consensus 54 ~~~g~~llDiGsGP---tiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~ 102 (256)
T PF01234_consen 54 GVKGETLLDIGSGP---TIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKE 102 (256)
T ss_dssp SS-EEEEEEES-TT-----GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-
T ss_pred CcCCCEEEEeCCCc---HHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCC
Confidence 34688999999999 44433222 22347999999999999999887654
No 264
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=94.87 E-value=0.03 Score=54.81 Aligned_cols=55 Identities=33% Similarity=0.316 Sum_probs=43.7
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEE
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYK 318 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~ 318 (530)
.|.+|||+|||+|--+...|. ....+|++.|..+..+..++-|++.+|.+ |.+..
T Consensus 79 rgkrVLd~gagsgLvaIAaa~--aGA~~v~a~d~~P~~~~ai~lNa~angv~-i~~~~ 133 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAAR--AGAAEVVAADIDPWLEQAIRLNAAANGVS-ILFTH 133 (218)
T ss_pred ccceeeecccccChHHHHHHH--hhhHHHHhcCCChHHHHHhhcchhhccce-eEEee
Confidence 689999999999987755544 34569999999999999999999888743 44443
No 265
>PRK04148 hypothetical protein; Provisional
Probab=94.81 E-value=0.098 Score=48.31 Aligned_cols=54 Identities=17% Similarity=0.236 Sum_probs=39.4
Q ss_pred CCCCeEEeeccCCCh-HHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 260 QKGERILDMCAAPGG-KTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 260 qpGe~VLDmCAAPGg-KT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
..+.+|||+|+|.|. .+..|++ + .-+|+|+|+++.++..++++ + +.++..|.+.
T Consensus 15 ~~~~kileIG~GfG~~vA~~L~~-~--G~~ViaIDi~~~aV~~a~~~----~---~~~v~dDlf~ 69 (134)
T PRK04148 15 GKNKKIVELGIGFYFKVAKKLKE-S--GFDVIVIDINEKAVEKAKKL----G---LNAFVDDLFN 69 (134)
T ss_pred ccCCEEEEEEecCCHHHHHHHHH-C--CCEEEEEECCHHHHHHHHHh----C---CeEEECcCCC
Confidence 456899999999996 4545554 2 35999999999987666443 3 4677777664
No 266
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=94.59 E-value=1 Score=42.91 Aligned_cols=81 Identities=23% Similarity=0.308 Sum_probs=60.5
Q ss_pred CCCCCCeEEEcCCCCCCCCcccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCCCHHHHHHHHHhC
Q 009628 422 SPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEALVRYALDRY 501 (530)
Q Consensus 422 ~~~sFDrVLlDaPCSglG~rp~l~~~~~t~~~l~~~~~~Qr~ll~~A~~lLkpGG~LVYSTCSi~~~ENE~vV~~~L~~~ 501 (530)
....||+|+-+=|+.|.|. ......++.+..+-+.+|..|.++|+++|.+..+-|+-.|- +.-.|..+ .+.
T Consensus 72 ~~~~FDrIiFNFPH~G~~~-------~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py-~~W~i~~l-A~~ 142 (166)
T PF10354_consen 72 KNQRFDRIIFNFPHVGGGS-------EDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPY-DSWNIEEL-AAE 142 (166)
T ss_pred cCCcCCEEEEeCCCCCCCc-------cchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCC-ccccHHHH-HHh
Confidence 4578999999999998553 23345666677777899999999999999999999998885 55555533 344
Q ss_pred CCceeecCCC
Q 009628 502 KFLSLAPQHP 511 (530)
Q Consensus 502 ~~~~l~~~~p 511 (530)
.++.|....+
T Consensus 143 ~gl~l~~~~~ 152 (166)
T PF10354_consen 143 AGLVLVRKVP 152 (166)
T ss_pred cCCEEEEEec
Confidence 5677765544
No 267
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=94.52 E-value=0.41 Score=47.10 Aligned_cols=41 Identities=17% Similarity=0.210 Sum_probs=36.0
Q ss_pred hcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCH
Q 009628 256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296 (530)
Q Consensus 256 ~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~ 296 (530)
+..++||.+|+|+-=|-|-+|..++-.++.+|.|+++=-.+
T Consensus 43 FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e 83 (238)
T COG4798 43 FAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAE 83 (238)
T ss_pred EeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchh
Confidence 45678999999999999999999999999999999974443
No 268
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=94.26 E-value=0.095 Score=46.28 Aligned_cols=35 Identities=34% Similarity=0.477 Sum_probs=28.1
Q ss_pred ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 009628 273 GGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC 313 (530)
Q Consensus 273 GgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~ 313 (530)
|..+.++|..++ .+|+++|++..|.+ .++++|.+.
T Consensus 3 G~~a~q~ak~~G--~~vi~~~~~~~k~~----~~~~~Ga~~ 37 (130)
T PF00107_consen 3 GLMAIQLAKAMG--AKVIATDRSEEKLE----LAKELGADH 37 (130)
T ss_dssp HHHHHHHHHHTT--SEEEEEESSHHHHH----HHHHTTESE
T ss_pred HHHHHHHHHHcC--CEEEEEECCHHHHH----HHHhhcccc
Confidence 667888999886 89999999999964 556778654
No 269
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=94.02 E-value=0.34 Score=49.90 Aligned_cols=61 Identities=21% Similarity=0.284 Sum_probs=46.4
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
.|..|+=|+ ---.|...+.|.+-.-+|..+|++..-+.-+.+.|+++|+++|++++.|..+
T Consensus 152 ~gK~I~vvG--DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~ 212 (354)
T COG1568 152 EGKEIFVVG--DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRN 212 (354)
T ss_pred CCCeEEEEc--CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcc
Confidence 466777776 3344444444444445888899999999999999999999999999998654
No 270
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=93.91 E-value=0.036 Score=57.35 Aligned_cols=49 Identities=22% Similarity=0.230 Sum_probs=41.0
Q ss_pred CCCeEEeeccCCChHHH-HHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC
Q 009628 261 KGERILDMCAAPGGKTT-AIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL 311 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~-~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl 311 (530)
.|+.|.||.||-|-.|. .+.. .+...|+|+|.++.-++.++++++.++.
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~--agAk~V~A~EwNp~svEaLrR~~~~N~V 243 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVT--AGAKTVFACEWNPWSVEALRRNAEANNV 243 (351)
T ss_pred ccchhhhhhcccceEEeehhhc--cCccEEEEEecCHHHHHHHHHHHHhcch
Confidence 36999999999999997 4433 3456899999999999999999987754
No 271
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=93.71 E-value=0.58 Score=48.59 Aligned_cols=52 Identities=17% Similarity=0.099 Sum_probs=34.9
Q ss_pred HhcCCCCCCeEEeeccCCCh-HHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC
Q 009628 255 HALDPQKGERILDMCAAPGG-KTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK 312 (530)
Q Consensus 255 ~~LdpqpGe~VLDmCAAPGg-KT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~ 312 (530)
....+++|++||=.+||+-| .+.++|..++ ..|++++++..|. +.++++|.+
T Consensus 159 ~~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G--~~vi~~~~~~~~~----~~a~~~Ga~ 211 (329)
T TIGR02822 159 LRASLPPGGRLGLYGFGGSAHLTAQVALAQG--ATVHVMTRGAAAR----RLALALGAA 211 (329)
T ss_pred HhcCCCCCCEEEEEcCCHHHHHHHHHHHHCC--CeEEEEeCChHHH----HHHHHhCCc
Confidence 34578899999988764322 2234444442 3799999999985 456677865
No 272
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=93.60 E-value=0.61 Score=45.99 Aligned_cols=51 Identities=12% Similarity=0.037 Sum_probs=34.6
Q ss_pred HhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHH
Q 009628 255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLA 306 (530)
Q Consensus 255 ~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a 306 (530)
..+++++++..+|++||-|.-..+.|... +-...+++|+.+......+.+.
T Consensus 36 ~~~~l~~~dvF~DlGSG~G~~v~~aal~~-~~~~~~GIEi~~~~~~~a~~~~ 86 (205)
T PF08123_consen 36 DELNLTPDDVFYDLGSGVGNVVFQAALQT-GCKKSVGIEILPELHDLAEELL 86 (205)
T ss_dssp HHTT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHH
T ss_pred HHhCCCCCCEEEECCCCCCHHHHHHHHHc-CCcEEEEEEechHHHHHHHHHH
Confidence 45788999999999999999888777544 4557999999998876554433
No 273
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=93.59 E-value=0.28 Score=50.32 Aligned_cols=47 Identities=23% Similarity=0.239 Sum_probs=39.3
Q ss_pred CeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh
Q 009628 263 ERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM 309 (530)
Q Consensus 263 e~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~ 309 (530)
.+|||.+||||.-+.++...++..-+++++|.|..++...+.+++..
T Consensus 35 ~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~ 81 (274)
T PF09243_consen 35 RSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG 81 (274)
T ss_pred ceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence 48999999999888777788876779999999999988777766543
No 274
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.53 E-value=0.33 Score=48.96 Aligned_cols=37 Identities=32% Similarity=0.494 Sum_probs=31.9
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHH
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv 299 (530)
+|.++||++|.+||+|-.+.+ ++.-.|+|+|...+.+
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq--~gAk~VyavDVG~~Ql 115 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQ--RGAKHVYAVDVGYGQL 115 (245)
T ss_pred CCCEEEEecCCCccHHHHHHH--cCCcEEEEEEccCCcc
Confidence 689999999999999998877 3456999999998754
No 275
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=93.52 E-value=0.58 Score=48.25 Aligned_cols=60 Identities=20% Similarity=0.212 Sum_probs=38.7
Q ss_pred CeEEeeccCCChHHHHH-HHHcCCCcEEEEEeCCHHHHHHHHHHHH-HhCCCc-eEEEEcchh
Q 009628 263 ERILDMCAAPGGKTTAI-ASLLRDEGEVVAVDRSHNKVMDIQKLAA-EMGLKC-ITTYKLDAL 322 (530)
Q Consensus 263 e~VLDmCAAPGgKT~~i-A~lm~~~G~VvA~D~s~~kv~~i~~~a~-~~gl~~-i~~~~~Da~ 322 (530)
.+|+=+|+||=-.|..+ |........|+.+|+++..+...+++.+ .+|+.. ++++..|..
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~ 184 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVL 184 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GG
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchh
Confidence 49999999998888755 4433345689999999999999999888 567654 888888864
No 276
>PRK11524 putative methyltransferase; Provisional
Probab=93.46 E-value=0.29 Score=50.30 Aligned_cols=60 Identities=12% Similarity=0.132 Sum_probs=37.4
Q ss_pred CCCCCCCeEEEcCCCCCCCCcccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEecCC
Q 009628 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTI 485 (530)
Q Consensus 421 f~~~sFDrVLlDaPCSglG~rp~l~~~~~t~~~l~~~~~~Qr~ll~~A~~lLkpGG~LVYSTCSi 485 (530)
++.++||.|++|||.-. |..-......+. ..++...-..+|..+.++|||||.|+.. |..
T Consensus 23 l~~~siDlIitDPPY~~-~~~~~~~~~~~~---~~~~~~~l~~~l~~~~rvLK~~G~i~i~-~~~ 82 (284)
T PRK11524 23 IPSESVDLIFADPPYNI-GKNFDGLIEAWK---EDLFIDWLYEWIDECHRVLKKQGTMYIM-NST 82 (284)
T ss_pred cccCcccEEEECCCccc-cccccccccccc---HHHHHHHHHHHHHHHHHHhCCCcEEEEE-cCc
Confidence 34578999999999842 211000011111 1223334568999999999999998874 444
No 277
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=93.44 E-value=0.81 Score=47.56 Aligned_cols=50 Identities=28% Similarity=0.369 Sum_probs=33.6
Q ss_pred CCCCCCeEEeeccCCChHHHHHHHHcCCCc--EEEEEeCCHHHHHHHHHHHHHhCCCc
Q 009628 258 DPQKGERILDMCAAPGGKTTAIASLLRDEG--EVVAVDRSHNKVMDIQKLAAEMGLKC 313 (530)
Q Consensus 258 dpqpGe~VLDmCAAPGgKT~~iA~lm~~~G--~VvA~D~s~~kv~~i~~~a~~~gl~~ 313 (530)
...+|++||=.+| |+-....+++.+..| .|+++|++++|++ .++++|.+.
T Consensus 166 ~~~~g~~VlV~G~--G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~----~a~~lGa~~ 217 (343)
T PRK09880 166 GDLQGKRVFVSGV--GPIGCLIVAAVKTLGAAEIVCADVSPRSLS----LAREMGADK 217 (343)
T ss_pred CCCCCCEEEEECC--CHHHHHHHHHHHHcCCcEEEEEeCCHHHHH----HHHHcCCcE
Confidence 4568999998765 565554444433333 7999999998875 456678653
No 278
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=93.34 E-value=0.73 Score=48.72 Aligned_cols=45 Identities=29% Similarity=0.382 Sum_probs=33.6
Q ss_pred CCCCCCeEEeeccCCChH-HHHHHHHcCCCcEEEEEeCCHHHHHHHH
Q 009628 258 DPQKGERILDMCAAPGGK-TTAIASLLRDEGEVVAVDRSHNKVMDIQ 303 (530)
Q Consensus 258 dpqpGe~VLDmCAAPGgK-T~~iA~lm~~~G~VvA~D~s~~kv~~i~ 303 (530)
..+++.+|+=+||||=|. +.++|.++ +..+|+++|+++.|++.++
T Consensus 165 ~~~~~~~V~V~GaGpIGLla~~~a~~~-Ga~~Viv~d~~~~Rl~~A~ 210 (350)
T COG1063 165 AVRPGGTVVVVGAGPIGLLAIALAKLL-GASVVIVVDRSPERLELAK 210 (350)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCHHHHHHHH
Confidence 345666999999999555 45666655 4579999999999986443
No 279
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=93.16 E-value=0.31 Score=48.55 Aligned_cols=43 Identities=26% Similarity=0.169 Sum_probs=31.1
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHH
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKL 305 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~ 305 (530)
.-.+.||.+||-|--|-++. ++---+|-.+|..++-+..+++.
T Consensus 55 ~~~~alDcGAGIGRVTk~lL--l~~f~~VDlVEp~~~Fl~~a~~~ 97 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLL--LPVFDEVDLVEPVEKFLEQAKEY 97 (218)
T ss_dssp --SEEEEET-TTTHHHHHTC--CCC-SEEEEEES-HHHHHHHHHH
T ss_pred CcceEEecccccchhHHHHH--HHhcCEeEEeccCHHHHHHHHHH
Confidence 45789999999999998773 33345899999999988877654
No 280
>PRK13402 gamma-glutamyl kinase; Provisional
Probab=93.01 E-value=0.12 Score=55.40 Aligned_cols=63 Identities=19% Similarity=0.269 Sum_probs=55.1
Q ss_pred CCCeEEEcchhHHHHH-hccccccCceeeccCCccCCCEEEEEEcccCCcCCCCCcccccccccccCCCCCCCcccCCce
Q 009628 122 PPKEVIVSRKCAEAVL-RGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGL 200 (530)
Q Consensus 122 ~~k~ViVd~~~~eAVL-rGA~v~aPGil~~~~~i~~Gd~VaV~~~~~~~~~~~~w~~~~~rg~~~~~~~~~~~~~~~~gv 200 (530)
..-.|+||..|.+|+. +|+.+...||++....|++||.|.|. +..+.
T Consensus 275 ~~G~i~vd~ga~~al~~~~~sLl~~gi~~v~g~F~~gd~v~i~--------------------------------~~~g~ 322 (368)
T PRK13402 275 PQGEIVVENDFDRALDNHSEQLTSDDVVEIKGDFSVGDTILVR--------------------------------KGDGT 322 (368)
T ss_pred CCeeEEECccHHHHHHhcCCcccccceEEEeCEecCCCEEEEE--------------------------------CCCCC
Confidence 4468999999999997 58999999999999999999999999 34567
Q ss_pred EEeecccccCcccccc
Q 009628 201 YIGQGTAMMSRAGIFR 216 (530)
Q Consensus 201 ~Vg~Gia~mSreelf~ 216 (530)
.++.|....+.+++.+
T Consensus 323 ~~~rg~~~y~s~~~~~ 338 (368)
T PRK13402 323 KLAKGKSNYSSCLLNF 338 (368)
T ss_pred EEEEEEccCCHHHHHH
Confidence 8899999888887764
No 281
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=93.01 E-value=0.38 Score=44.78 Aligned_cols=33 Identities=21% Similarity=0.213 Sum_probs=25.6
Q ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCc-eEEEEcc
Q 009628 288 EVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLD 320 (530)
Q Consensus 288 ~VvA~D~s~~kv~~i~~~a~~~gl~~-i~~~~~D 320 (530)
+|+|+|+.+..+..-+++.++.++.. ++.+...
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~s 34 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDS 34 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECC
Confidence 58999999999999999999998865 7666543
No 282
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=92.76 E-value=0.2 Score=51.39 Aligned_cols=42 Identities=19% Similarity=0.240 Sum_probs=30.9
Q ss_pred CCeEEeeccCCChHHHHHHHHc----CC----CcEEEEEeCCHHHHHHHH
Q 009628 262 GERILDMCAAPGGKTTAIASLL----RD----EGEVVAVDRSHNKVMDIQ 303 (530)
Q Consensus 262 Ge~VLDmCAAPGgKT~~iA~lm----~~----~G~VvA~D~s~~kv~~i~ 303 (530)
--+||-++|++|-=.--||.++ .. .-+|+|.|+|...++.++
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~ 146 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKAR 146 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHh
Confidence 4589999999996555444443 32 358999999999887654
No 283
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=92.62 E-value=1.1 Score=46.80 Aligned_cols=51 Identities=24% Similarity=0.286 Sum_probs=34.7
Q ss_pred hcCCCCCCeEEeeccCCChHHHHHHHHcCCCc--EEEEEeCCHHHHHHHHHHHHHhCCC
Q 009628 256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEG--EVVAVDRSHNKVMDIQKLAAEMGLK 312 (530)
Q Consensus 256 ~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G--~VvA~D~s~~kv~~i~~~a~~~gl~ 312 (530)
..++++|++||=.+| |+-...++++.+..| .|+++|.+..|... ++++|.+
T Consensus 171 ~~~~~~g~~VlV~G~--g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~----~~~~Ga~ 223 (358)
T TIGR03451 171 TGGVKRGDSVAVIGC--GGVGDAAIAGAALAGASKIIAVDIDDRKLEW----AREFGAT 223 (358)
T ss_pred ccCCCCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHH----HHHcCCc
Confidence 346789999998854 666555444443334 59999999998654 4567764
No 284
>PRK00536 speE spermidine synthase; Provisional
Probab=92.17 E-value=4 Score=41.86 Aligned_cols=51 Identities=8% Similarity=-0.021 Sum_probs=38.2
Q ss_pred HHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH
Q 009628 254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAE 308 (530)
Q Consensus 254 ~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~ 308 (530)
+...-|.| .+||=++.|-||-.-.+... + .+|+-+|++..-++..++....
T Consensus 66 pl~~h~~p-k~VLIiGGGDGg~~REvLkh--~-~~v~mVeID~~Vv~~~k~~lP~ 116 (262)
T PRK00536 66 GGCTKKEL-KEVLIVDGFDLELAHQLFKY--D-THVDFVQADEKILDSFISFFPH 116 (262)
T ss_pred HHhhCCCC-CeEEEEcCCchHHHHHHHCc--C-CeeEEEECCHHHHHHHHHHCHH
Confidence 33444554 79999999999988877664 2 4999999999888777664443
No 285
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=92.15 E-value=0.84 Score=48.26 Aligned_cols=48 Identities=27% Similarity=0.234 Sum_probs=35.8
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCC
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL 311 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl 311 (530)
.|..|||++||.|-.+...|+. +...|+|++.|. +..-.+++.+.+.+
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqA--GA~~vYAvEAS~-MAqyA~~Lv~~N~~ 224 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQA--GAKKVYAVEASE-MAQYARKLVASNNL 224 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHh--CcceEEEEehhH-HHHHHHHHHhcCCc
Confidence 4788999999999888776663 456899999985 44556666665544
No 286
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=91.94 E-value=0.1 Score=51.94 Aligned_cols=47 Identities=28% Similarity=0.379 Sum_probs=39.9
Q ss_pred HHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHH
Q 009628 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300 (530)
Q Consensus 253 ~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~ 300 (530)
+.+.|.|++|...+||.-|.||.|..|.+- ...-.++|+|+++-.-+
T Consensus 35 vl~~lspv~g~sf~DmTfGagGHt~~ilqk-~se~k~yalDrDP~A~~ 81 (303)
T KOG2782|consen 35 VLDILSPVRGRSFVDMTFGAGGHTSSILQK-HSELKNYALDRDPVARK 81 (303)
T ss_pred HHHHcCCCCCceEEEEeccCCcchHHHHHh-CcHhhhhhhccChHHHH
Confidence 567889999999999999999999999885 34578999999985533
No 287
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=91.87 E-value=1.3 Score=46.59 Aligned_cols=51 Identities=27% Similarity=0.336 Sum_probs=34.8
Q ss_pred hcCCCCCCeEEeeccCCChHHHHHHHHcCCCc--EEEEEeCCHHHHHHHHHHHHHhCCC
Q 009628 256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEG--EVVAVDRSHNKVMDIQKLAAEMGLK 312 (530)
Q Consensus 256 ~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G--~VvA~D~s~~kv~~i~~~a~~~gl~ 312 (530)
...+++|++||=.++ |+-...++++.+..| .|+++|.++.|.+ .++++|.+
T Consensus 186 ~~~i~~g~~VlV~G~--G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~----~a~~~Ga~ 238 (371)
T cd08281 186 TAGVRPGQSVAVVGL--GGVGLSALLGAVAAGASQVVAVDLNEDKLA----LARELGAT 238 (371)
T ss_pred ccCCCCCCEEEEECC--CHHHHHHHHHHHHcCCCcEEEEcCCHHHHH----HHHHcCCc
Confidence 346789999998764 565555544443334 6999999999865 44567764
No 288
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=91.82 E-value=0.41 Score=47.53 Aligned_cols=64 Identities=22% Similarity=0.331 Sum_probs=37.6
Q ss_pred CCCCCCCCeEEEcCCCCC-CCCcccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCCCHHHHHHHH
Q 009628 420 GFSPNSFDRVLLDAPCSA-LGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEALVRYAL 498 (530)
Q Consensus 420 ~f~~~sFDrVLlDaPCSg-lG~rp~l~~~~~t~~~l~~~~~~Qr~ll~~A~~lLkpGG~LVYSTCSi~~~ENE~vV~~~L 498 (530)
+.+.++.|.++. |=+ +|+ .| ..+|.+|.|.|||||.|....-+- .-+|...-..++
T Consensus 117 PL~~~svDv~Vf---cLSLMGT-------n~------------~~fi~EA~RvLK~~G~L~IAEV~S-Rf~~~~~F~~~~ 173 (219)
T PF05148_consen 117 PLEDESVDVAVF---CLSLMGT-------NW------------PDFIREANRVLKPGGILKIAEVKS-RFENVKQFIKAL 173 (219)
T ss_dssp S--TT-EEEEEE---ES---SS--------H------------HHHHHHHHHHEEEEEEEEEEEEGG-G-S-HHHHHHHH
T ss_pred cCCCCceeEEEE---EhhhhCC-------Cc------------HHHHHHHHheeccCcEEEEEEecc-cCcCHHHHHHHH
Confidence 345688999987 533 243 11 178999999999999987665332 223555555666
Q ss_pred HhCCCceee
Q 009628 499 DRYKFLSLA 507 (530)
Q Consensus 499 ~~~~~~~l~ 507 (530)
.++ ++++.
T Consensus 174 ~~~-GF~~~ 181 (219)
T PF05148_consen 174 KKL-GFKLK 181 (219)
T ss_dssp HCT-TEEEE
T ss_pred HHC-CCeEE
Confidence 665 34444
No 289
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=91.36 E-value=0.38 Score=48.92 Aligned_cols=51 Identities=14% Similarity=0.117 Sum_probs=38.1
Q ss_pred eEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 264 RILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 264 ~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
+++|+|||-||.+..+-+. +=-.|.|+|+++..++..+.|.. .....|..+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~a--g~~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~ 52 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQA--GFEVVWAVEIDPDACETYKANFP-------EVICGDITE 52 (335)
T ss_dssp EEEEET-TTTHHHHHHHHT--TEEEEEEEESSHHHHHHHHHHHT-------EEEESHGGG
T ss_pred cEEEEccCccHHHHHHHhc--CcEEEEEeecCHHHHHhhhhccc-------ccccccccc
Confidence 7999999999999887663 12378999999999988887764 455566543
No 290
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=91.04 E-value=3 Score=43.41 Aligned_cols=50 Identities=24% Similarity=0.315 Sum_probs=35.1
Q ss_pred cCCCCCCeEEeeccCC-ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC
Q 009628 257 LDPQKGERILDMCAAP-GGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK 312 (530)
Q Consensus 257 LdpqpGe~VLDmCAAP-GgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~ 312 (530)
..+++|++||=++||+ |.-+.++|..++ ..|+++|.+..|+.. ++++|.+
T Consensus 162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~~G--~~vi~~~~~~~~~~~----~~~~Ga~ 212 (349)
T TIGR03201 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAMG--AAVVAIDIDPEKLEM----MKGFGAD 212 (349)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHH----HHHhCCc
Confidence 5678999999998744 444455566553 379999999998654 4556764
No 291
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=90.86 E-value=0.21 Score=55.11 Aligned_cols=48 Identities=27% Similarity=0.366 Sum_probs=34.4
Q ss_pred CCCCCCCCeEEEcCCCCCCCCcccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEecCCC
Q 009628 420 GFSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTIN 486 (530)
Q Consensus 420 ~f~~~sFDrVLlDaPCSglG~rp~l~~~~~t~~~l~~~~~~Qr~ll~~A~~lLkpGG~LVYSTCSi~ 486 (530)
+|+.++||.|= ||.-.+ .| ...+ -.+|-..-++|||||.+|+|.--++
T Consensus 176 Pfp~~~fDmvH----csrc~i----~W---~~~~--------g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 176 PFPSNAFDMVH----CSRCLI----PW---HPND--------GFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred cCCccchhhhh----cccccc----cc---hhcc--------cceeehhhhhhccCceEEecCCccc
Confidence 78899999996 454433 22 2221 1466677789999999999988887
No 292
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=90.80 E-value=2 Score=44.49 Aligned_cols=50 Identities=22% Similarity=0.221 Sum_probs=32.9
Q ss_pred hcCCCCCCeEEeeccCCChHHH---HHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC
Q 009628 256 ALDPQKGERILDMCAAPGGKTT---AIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK 312 (530)
Q Consensus 256 ~LdpqpGe~VLDmCAAPGgKT~---~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~ 312 (530)
....++|++||=.+| |+-.. ++|..++ ...|+++|.+..|... ++++|.+
T Consensus 155 ~~~~~~g~~vlV~G~--g~vG~~~~~~a~~~G-~~~v~~~~~~~~~~~~----~~~~Ga~ 207 (347)
T PRK10309 155 LAQGCEGKNVIIIGA--GTIGLLAIQCAVALG-AKSVTAIDINSEKLAL----AKSLGAM 207 (347)
T ss_pred hcCCCCCCEEEEECC--CHHHHHHHHHHHHcC-CCeEEEECCCHHHHHH----HHHcCCc
Confidence 446678999998854 55544 4445443 2358999999988653 4566764
No 293
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=90.72 E-value=2.9 Score=42.16 Aligned_cols=51 Identities=33% Similarity=0.350 Sum_probs=34.7
Q ss_pred hcCCCCCCeEEeeccCCChHHHHHHHHcCCCc--EEEEEeCCHHHHHHHHHHHHHhCCC
Q 009628 256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEG--EVVAVDRSHNKVMDIQKLAAEMGLK 312 (530)
Q Consensus 256 ~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G--~VvA~D~s~~kv~~i~~~a~~~gl~ 312 (530)
.+.+++|++||=++| |+-...++++.+..| .|+++|++..|.+ .++++|.+
T Consensus 115 ~~~~~~g~~VlV~G~--G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~----~a~~~Ga~ 167 (280)
T TIGR03366 115 AAGDLKGRRVLVVGA--GMLGLTAAAAAAAAGAARVVAADPSPDRRE----LALSFGAT 167 (280)
T ss_pred hccCCCCCEEEEECC--CHHHHHHHHHHHHcCCCEEEEECCCHHHHH----HHHHcCCc
Confidence 345679999998854 666655555444334 4999999998864 45667764
No 294
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=90.11 E-value=0.27 Score=53.23 Aligned_cols=65 Identities=20% Similarity=0.220 Sum_probs=55.9
Q ss_pred CCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC--ceEEEEcchhHHHhh
Q 009628 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK--CITTYKLDALKAVRR 327 (530)
Q Consensus 260 qpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~--~i~~~~~Da~k~v~~ 327 (530)
++|+.|-|+|||-|-.+.-++. + ..+|+|+|.++..++-++.+++...+. .|+.+.+|+-..+++
T Consensus 248 k~gevv~D~FaGvGPfa~Pa~k--K-~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Flr~ 314 (495)
T KOG2078|consen 248 KPGEVVCDVFAGVGPFALPAAK--K-GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFLRQ 314 (495)
T ss_pred CCcchhhhhhcCcCccccchhh--c-CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHhhc
Confidence 6899999999999999877665 2 379999999999999999999887764 499999999887653
No 295
>PRK13699 putative methylase; Provisional
Probab=90.09 E-value=0.6 Score=46.62 Aligned_cols=73 Identities=18% Similarity=0.213 Sum_probs=42.4
Q ss_pred CCCCCCCeEEEcCCCCCCCCcccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCCCHHHHHHHHHh
Q 009628 421 FSPNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEALVRYALDR 500 (530)
Q Consensus 421 f~~~sFDrVLlDaPCSglG~rp~l~~~~~t~~~l~~~~~~Qr~ll~~A~~lLkpGG~LVYSTCSi~~~ENE~vV~~~L~~ 500 (530)
++.+++|.|+.|||.- .|.+-..-. .... ..+.....+.+.++.+.|||||.++ +-|+.+. -..+..++++
T Consensus 16 lpd~SVDLIiTDPPY~-i~~~~~~~~-~~~~---~~~~ew~~~~l~E~~RVLKpgg~l~-if~~~~~---~~~~~~al~~ 86 (227)
T PRK13699 16 FPDNAVDFILTDPPYL-VGFRDRQGR-TIAG---DKTDEWLQPACNEMYRVLKKDALMV-SFYGWNR---VDRFMAAWKN 86 (227)
T ss_pred CCccccceEEeCCCcc-cccccCCCc-cccc---ccHHHHHHHHHHHHHHHcCCCCEEE-EEecccc---HHHHHHHHHH
Confidence 4568999999999994 333211000 0000 1122344588999999999988775 4566542 2334445555
Q ss_pred CC
Q 009628 501 YK 502 (530)
Q Consensus 501 ~~ 502 (530)
.+
T Consensus 87 ~G 88 (227)
T PRK13699 87 AG 88 (227)
T ss_pred CC
Confidence 43
No 296
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=90.03 E-value=2.4 Score=44.97 Aligned_cols=49 Identities=20% Similarity=0.279 Sum_probs=36.1
Q ss_pred HhcCCCCCCeEEeeccCC-ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHH
Q 009628 255 HALDPQKGERILDMCAAP-GGKTTAIASLLRDEGEVVAVDRSHNKVMDIQK 304 (530)
Q Consensus 255 ~~LdpqpGe~VLDmCAAP-GgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~ 304 (530)
....+++|++||..+||+ |-.+.++|+.++ .+.|+++|.+..|+..+++
T Consensus 178 ~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g-~~~vi~~~~~~~~~~~~~~ 227 (386)
T cd08283 178 ELAEVKPGDTVAVWGCGPVGLFAARSAKLLG-AERVIAIDRVPERLEMARS 227 (386)
T ss_pred hhccCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH
Confidence 456678999999997665 556667777653 2469999999988765544
No 297
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=89.67 E-value=3.6 Score=42.11 Aligned_cols=53 Identities=21% Similarity=0.364 Sum_probs=35.1
Q ss_pred hcCCCCCCeEEeeccCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCc
Q 009628 256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKC 313 (530)
Q Consensus 256 ~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~~ 313 (530)
...+++|++||=.+| .|+-...++++.+..| +|++++.+..|...+ +++|.+.
T Consensus 133 ~~~~~~g~~VLI~ga-~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~----~~lGa~~ 186 (325)
T TIGR02825 133 ICGVKGGETVMVNAA-AGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYL----KKLGFDV 186 (325)
T ss_pred HhCCCCCCEEEEeCC-ccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH----HHcCCCE
Confidence 456789999996654 3555555444443334 799999999886544 5577653
No 298
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=89.62 E-value=3 Score=43.47 Aligned_cols=44 Identities=11% Similarity=0.059 Sum_probs=30.3
Q ss_pred CCCCCCeEEeeccCCChHHH---HHHHHcCCCcEEEEEeCCHHHHHHHH
Q 009628 258 DPQKGERILDMCAAPGGKTT---AIASLLRDEGEVVAVDRSHNKVMDIQ 303 (530)
Q Consensus 258 dpqpGe~VLDmCAAPGgKT~---~iA~lm~~~G~VvA~D~s~~kv~~i~ 303 (530)
.+++|++||=.+| |+-.. ++|..+.....|+++|+++.|++.++
T Consensus 160 ~~~~g~~VlV~G~--G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~ 206 (341)
T cd08237 160 AHKDRNVIGVWGD--GNLGYITALLLKQIYPESKLVVFGKHQEKLDLFS 206 (341)
T ss_pred CCCCCCEEEEECC--CHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHh
Confidence 4688999998876 55544 34443222357999999999876553
No 299
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=89.59 E-value=3.4 Score=42.48 Aligned_cols=54 Identities=26% Similarity=0.316 Sum_probs=35.8
Q ss_pred HHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCc-E-EEEEeCCHHHHHHHHHHHHHhCCCc
Q 009628 254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEG-E-VVAVDRSHNKVMDIQKLAAEMGLKC 313 (530)
Q Consensus 254 ~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G-~-VvA~D~s~~kv~~i~~~a~~~gl~~ 313 (530)
.+.+.+++|++||=.++ |+-...++++.+..| . |+++|.+..|.. .++++|.+.
T Consensus 156 l~~~~~~~g~~vlV~G~--G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~----~~~~~ga~~ 211 (339)
T cd08239 156 LRRVGVSGRDTVLVVGA--GPVGLGALMLARALGAEDVIGVDPSPERLE----LAKALGADF 211 (339)
T ss_pred HHhcCCCCCCEEEEECC--CHHHHHHHHHHHHcCCCEEEEECCCHHHHH----HHHHhCCCE
Confidence 34467889999998843 666655544443222 4 999999998864 445677653
No 300
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=89.54 E-value=3.4 Score=41.42 Aligned_cols=44 Identities=18% Similarity=0.205 Sum_probs=32.3
Q ss_pred CCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHH
Q 009628 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKL 305 (530)
Q Consensus 260 qpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~ 305 (530)
..|.|||.++=|-|-..+.|-+. +--+-+-++-++.-++++++.
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~--~p~~H~IiE~hp~V~krmr~~ 143 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEA--PPDEHWIIEAHPDVLKRMRDW 143 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhc--CCcceEEEecCHHHHHHHHhc
Confidence 57899999999999888877552 234556678888777666554
No 301
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=89.14 E-value=0.76 Score=44.01 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=28.0
Q ss_pred CCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHH
Q 009628 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQ 303 (530)
Q Consensus 260 qpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~ 303 (530)
.+|+.|||-+||+|. |.+.|..|+ -+-+++|+++.-+..++
T Consensus 190 ~~gdiVlDpF~GSGT-T~~aa~~l~--R~~ig~E~~~~y~~~a~ 230 (231)
T PF01555_consen 190 NPGDIVLDPFAGSGT-TAVAAEELG--RRYIGIEIDEEYCEIAK 230 (231)
T ss_dssp -TT-EEEETT-TTTH-HHHHHHHTT---EEEEEESSHHHHHHHH
T ss_pred ccceeeehhhhccCh-HHHHHHHcC--CeEEEEeCCHHHHHHhc
Confidence 579999999999995 333444443 46999999998876654
No 302
>PRK12939 short chain dehydrogenase; Provisional
Probab=89.10 E-value=7 Score=37.86 Aligned_cols=61 Identities=21% Similarity=0.243 Sum_probs=43.5
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
.+.+|| +.-|.|+.+.++|..+..+| +|++++++..++..+.+..+..+ ..+.++..|..+
T Consensus 6 ~~~~vl-ItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~ 67 (250)
T PRK12939 6 AGKRAL-VTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG-GRAHAIAADLAD 67 (250)
T ss_pred CCCEEE-EeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCC
Confidence 356777 55567899999988775444 89999999988877665555444 247778888643
No 303
>PLN02740 Alcohol dehydrogenase-like
Probab=89.07 E-value=3.6 Score=43.56 Aligned_cols=51 Identities=25% Similarity=0.333 Sum_probs=36.3
Q ss_pred hcCCCCCCeEEeeccCCChHHHHHHHHcCCCc--EEEEEeCCHHHHHHHHHHHHHhCCC
Q 009628 256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEG--EVVAVDRSHNKVMDIQKLAAEMGLK 312 (530)
Q Consensus 256 ~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G--~VvA~D~s~~kv~~i~~~a~~~gl~ 312 (530)
...+++|++||=.+| |+-..+++++.+..| .|+++|.+..|++.+ +++|.+
T Consensus 193 ~~~~~~g~~VlV~G~--G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a----~~~Ga~ 245 (381)
T PLN02740 193 TANVQAGSSVAIFGL--GAVGLAVAEGARARGASKIIGVDINPEKFEKG----KEMGIT 245 (381)
T ss_pred ccCCCCCCEEEEECC--CHHHHHHHHHHHHCCCCcEEEEcCChHHHHHH----HHcCCc
Confidence 356789999998864 666666555554444 699999999986544 557764
No 304
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=88.29 E-value=1 Score=44.62 Aligned_cols=80 Identities=21% Similarity=0.245 Sum_probs=42.4
Q ss_pred cceEEEeccchHHHHHhc--CCCCCCeEEeeccCCChHHHHHHHHc---CCCcEEEEEeCCHHHHHHHHHHHHHhCC-Cc
Q 009628 240 EGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGKTTAIASLL---RDEGEVVAVDRSHNKVMDIQKLAAEMGL-KC 313 (530)
Q Consensus 240 ~G~i~lQd~~S~v~~~~L--dpqpGe~VLDmCAAPGgKT~~iA~lm---~~~G~VvA~D~s~~kv~~i~~~a~~~gl-~~ 313 (530)
.|.-.+|..--|++-.-| ..|| +.|+.++.+-||-+...|.++ +++|+|+++|++-+....... +...+ +.
T Consensus 10 ~G~pi~q~P~Dm~~~qeli~~~kP-d~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~--e~hp~~~r 86 (206)
T PF04989_consen 10 LGRPIIQYPQDMVAYQELIWELKP-DLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAI--ESHPMSPR 86 (206)
T ss_dssp TTEEESS-HHHHHHHHHHHHHH---SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GG--GG----TT
T ss_pred CCeehhcCHHHHHHHHHHHHHhCC-CeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHH--hhccccCc
Confidence 355566665555544332 3444 599999999999999888655 578999999996433321111 11122 45
Q ss_pred eEEEEcchh
Q 009628 314 ITTYKLDAL 322 (530)
Q Consensus 314 i~~~~~Da~ 322 (530)
|+++++|..
T Consensus 87 I~~i~Gds~ 95 (206)
T PF04989_consen 87 ITFIQGDSI 95 (206)
T ss_dssp EEEEES-SS
T ss_pred eEEEECCCC
Confidence 888888754
No 305
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=88.26 E-value=3 Score=43.45 Aligned_cols=46 Identities=24% Similarity=0.228 Sum_probs=31.0
Q ss_pred CCCCCeEEeeccCCChHHH---HHHHHcCCCcEEEEEeC---CHHHHHHHHHHHHHhCCC
Q 009628 259 PQKGERILDMCAAPGGKTT---AIASLLRDEGEVVAVDR---SHNKVMDIQKLAAEMGLK 312 (530)
Q Consensus 259 pqpGe~VLDmCAAPGgKT~---~iA~lm~~~G~VvA~D~---s~~kv~~i~~~a~~~gl~ 312 (530)
+++|++||=.+| |+-+. ++|..++ ..|+++++ +..|.+ .++++|.+
T Consensus 170 ~~~g~~vlI~G~--G~vG~~a~q~ak~~G--~~vi~~~~~~~~~~~~~----~~~~~Ga~ 221 (355)
T cd08230 170 TWNPRRALVLGA--GPIGLLAALLLRLRG--FEVYVLNRRDPPDPKAD----IVEELGAT 221 (355)
T ss_pred cCCCCEEEEECC--CHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHH----HHHHcCCE
Confidence 578999998875 55444 4455443 37999998 567754 45667764
No 306
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=88.22 E-value=3.4 Score=46.23 Aligned_cols=50 Identities=20% Similarity=0.155 Sum_probs=38.1
Q ss_pred CCCCCCeEEeeccCCChH-HHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 009628 258 DPQKGERILDMCAAPGGK-TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC 313 (530)
Q Consensus 258 dpqpGe~VLDmCAAPGgK-T~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~ 313 (530)
...+|++|+=++||+=|. +...|..|+- .|+++|+++.|++ .++++|.+.
T Consensus 161 G~~pg~kVlViGaG~iGL~Ai~~Ak~lGA--~V~a~D~~~~rle----~aeslGA~~ 211 (509)
T PRK09424 161 GKVPPAKVLVIGAGVAGLAAIGAAGSLGA--IVRAFDTRPEVAE----QVESMGAEF 211 (509)
T ss_pred CCcCCCEEEEECCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHH----HHHHcCCeE
Confidence 356899999999999664 5566776653 7999999999975 556678753
No 307
>PRK07102 short chain dehydrogenase; Provisional
Probab=87.15 E-value=11 Score=36.65 Aligned_cols=59 Identities=20% Similarity=0.228 Sum_probs=41.5
Q ss_pred eEEeeccCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 264 RILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 264 ~VLDmCAAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
+||=.+ |.|+-+.+++..+..+| .|+++|++..+...+.+.....+-.++.++..|..+
T Consensus 3 ~vlItG-as~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~ 62 (243)
T PRK07102 3 KILIIG-ATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILD 62 (243)
T ss_pred EEEEEc-CCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 455344 56888888887775455 899999999888766655544444467788887643
No 308
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=87.02 E-value=6.9 Score=40.31 Aligned_cols=54 Identities=24% Similarity=0.332 Sum_probs=34.2
Q ss_pred hcCCCCCCeEEeeccCCChHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 009628 256 ALDPQKGERILDMCAAPGGKTTAIASLLRDE-GEVVAVDRSHNKVMDIQKLAAEMGLKC 313 (530)
Q Consensus 256 ~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~-G~VvA~D~s~~kv~~i~~~a~~~gl~~ 313 (530)
...+++|++||=.+| .|+-...++++.+.. .+|++.+.+..|...+++ .+|.+.
T Consensus 146 ~~~~~~g~~VlI~Ga-~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~---~lGa~~ 200 (338)
T cd08295 146 VCKPKKGETVFVSAA-SGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKN---KLGFDD 200 (338)
T ss_pred hcCCCCCCEEEEecC-ccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH---hcCCce
Confidence 356899999996554 455555444443322 379999999888654432 167654
No 309
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=86.96 E-value=4.6 Score=40.99 Aligned_cols=53 Identities=21% Similarity=0.356 Sum_probs=33.3
Q ss_pred hcCCCCCCeEEeeccCCChHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 009628 256 ALDPQKGERILDMCAAPGGKTTAIASLLRDE-GEVVAVDRSHNKVMDIQKLAAEMGLKC 313 (530)
Q Consensus 256 ~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~-G~VvA~D~s~~kv~~i~~~a~~~gl~~ 313 (530)
...+++|++||=.+| .|+-...++++.+.. .+|++++.+..+...+ +++|.+.
T Consensus 138 ~~~~~~g~~vlI~ga-~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l----~~~Ga~~ 191 (329)
T cd08294 138 ICKPKAGETVVVNGA-AGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWL----KELGFDA 191 (329)
T ss_pred hcCCCCCCEEEEecC-ccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH----HHcCCCE
Confidence 456889999985543 455544443333222 3799999999886554 4467653
No 310
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=86.94 E-value=2 Score=44.91 Aligned_cols=57 Identities=18% Similarity=0.091 Sum_probs=39.9
Q ss_pred CCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh-CCCc-eEEEEc
Q 009628 262 GERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM-GLKC-ITTYKL 319 (530)
Q Consensus 262 Ge~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~-gl~~-i~~~~~ 319 (530)
.-++||++.|.-..=-.|+..+. .-.++|.|+++.-++-++++.+.+ +|.. |+....
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~ 161 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQ 161 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE-
T ss_pred ceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEc
Confidence 45899999988876555555443 479999999999999999999999 8764 766544
No 311
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=86.87 E-value=13 Score=35.71 Aligned_cols=59 Identities=24% Similarity=0.260 Sum_probs=42.1
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchh
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (530)
+|.+||=.+| .|+.+.++++.+...| +|++++++..+...+.+..... .++..+..|..
T Consensus 4 ~~~~vlItGa-~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dl~ 63 (238)
T PRK05786 4 KGKKVAIIGV-SEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY--GNIHYVVGDVS 63 (238)
T ss_pred CCcEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEECCCC
Confidence 3567877776 4888999988775445 8999999998877665444433 24667777754
No 312
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=86.83 E-value=1.9 Score=42.79 Aligned_cols=61 Identities=11% Similarity=0.176 Sum_probs=43.1
Q ss_pred CCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhC-------CCceEEEEcchhH
Q 009628 262 GERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG-------LKCITTYKLDALK 323 (530)
Q Consensus 262 Ge~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~g-------l~~i~~~~~Da~k 323 (530)
--.+.|++||=||....++-+.. .-.|+++++--+-..-++++++.++ +.+|.+...++.+
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fP-dtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk 128 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFP-DTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMK 128 (249)
T ss_pred cceEEeeccCccchhhhccccCc-cceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchh
Confidence 34689999999999999999765 4689999987655555566555554 4555555555444
No 313
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=86.72 E-value=14 Score=36.69 Aligned_cols=60 Identities=20% Similarity=0.120 Sum_probs=41.8
Q ss_pred CCCeEEeeccCC-ChHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchh
Q 009628 261 KGERILDMCAAP-GGKTTAIASLLRDE-GEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (530)
Q Consensus 261 pGe~VLDmCAAP-GgKT~~iA~lm~~~-G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (530)
.|..+|=.+|+. +|...++|..+... ..|+.+|++......+.+.+++.+ .+.++..|..
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~--~~~~~~~D~~ 70 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELD--APIFLPLDVR 70 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhc--cceEEecCcC
Confidence 477899999998 48888888776444 488888998765555666666554 2345666754
No 314
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=86.58 E-value=0.84 Score=43.48 Aligned_cols=65 Identities=26% Similarity=0.484 Sum_probs=41.3
Q ss_pred CCCCCeEEEcCCCCCCCCcccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCCCHHHHHHHHHhCC
Q 009628 423 PNSFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEALVRYALDRYK 502 (530)
Q Consensus 423 ~~sFDrVLlDaPCSglG~rp~l~~~~~t~~~l~~~~~~Qr~ll~~A~~lLkpGG~LVYSTCSi~~~ENE~vV~~~L~~~~ 502 (530)
..+||+|++|||- . +.+ .+.+....+-.++|+++.|+.+ ++.+||..+...|.-.
T Consensus 84 ~~~~d~vv~DPPF----------l---~~e-------c~~k~a~ti~~L~k~~~kii~~----Tg~~~~~~~~~ll~~~- 138 (162)
T PF10237_consen 84 KGKFDVVVIDPPF----------L---SEE-------CLTKTAETIRLLLKPGGKIILC----TGEEMEELIKKLLGLR- 138 (162)
T ss_pred CCCceEEEECCCC----------C---CHH-------HHHHHHHHHHHHhCccceEEEe----cHHHHHHHHHHHhCee-
Confidence 4689999999996 1 111 1223334444556888999976 5778999998888211
Q ss_pred CceeecCCCC
Q 009628 503 FLSLAPQHPR 512 (530)
Q Consensus 503 ~~~l~~~~p~ 512 (530)
-....|.|++
T Consensus 139 ~~~f~p~h~~ 148 (162)
T PF10237_consen 139 MCDFQPEHPN 148 (162)
T ss_pred EEeEEecccc
Confidence 1234455543
No 315
>PRK07576 short chain dehydrogenase; Provisional
Probab=86.44 E-value=15 Score=36.48 Aligned_cols=60 Identities=20% Similarity=0.197 Sum_probs=42.2
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchh
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (530)
++.+||=.+ |.|+-+.+++..+...| .|+++|++..++..+.+.....+. .+.++..|..
T Consensus 8 ~~k~ilItG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~ 68 (264)
T PRK07576 8 AGKNVVVVG-GTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGP-EGLGVSADVR 68 (264)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC-ceEEEECCCC
Confidence 567888776 47888888887765555 899999998887766555544442 3566777754
No 316
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=86.42 E-value=7 Score=40.28 Aligned_cols=79 Identities=28% Similarity=0.386 Sum_probs=54.5
Q ss_pred EEEeccchH-HHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCc-eEEEEc
Q 009628 243 IFLQNLPSI-VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKL 319 (530)
Q Consensus 243 i~lQd~~S~-v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~~-i~~~~~ 319 (530)
+.+|-+-.. +.-.+..+|||+.||= -||-||-...+.++++-.| .+||.-.+..|. +.|++.|.+. |.....
T Consensus 127 ~llq~lTAy~ll~e~y~vkpGhtVlv-haAAGGVGlll~Ql~ra~~a~tI~~asTaeK~----~~akenG~~h~I~y~~e 201 (336)
T KOG1197|consen 127 LLLQGLTAYMLLFEAYNVKPGHTVLV-HAAAGGVGLLLCQLLRAVGAHTIATASTAEKH----EIAKENGAEHPIDYSTE 201 (336)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEE-EeccccHHHHHHHHHHhcCcEEEEEeccHHHH----HHHHhcCCcceeeccch
Confidence 344544333 3334567899999995 5666888888888876544 788888888885 4567788765 666677
Q ss_pred chhHHHh
Q 009628 320 DALKAVR 326 (530)
Q Consensus 320 Da~k~v~ 326 (530)
|..+.+.
T Consensus 202 D~v~~V~ 208 (336)
T KOG1197|consen 202 DYVDEVK 208 (336)
T ss_pred hHHHHHH
Confidence 7776654
No 317
>PLN02827 Alcohol dehydrogenase-like
Probab=86.41 E-value=6.9 Score=41.49 Aligned_cols=50 Identities=22% Similarity=0.305 Sum_probs=34.7
Q ss_pred cCCCCCCeEEeeccCCChHHHHHHHHcCCCc--EEEEEeCCHHHHHHHHHHHHHhCCC
Q 009628 257 LDPQKGERILDMCAAPGGKTTAIASLLRDEG--EVVAVDRSHNKVMDIQKLAAEMGLK 312 (530)
Q Consensus 257 LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G--~VvA~D~s~~kv~~i~~~a~~~gl~ 312 (530)
.++++|++||=.++ |+-...++++.+..| .|+++|.+..|.. .++++|++
T Consensus 189 ~~~~~g~~VlV~G~--G~vG~~~iqlak~~G~~~vi~~~~~~~~~~----~a~~lGa~ 240 (378)
T PLN02827 189 ADVSKGSSVVIFGL--GTVGLSVAQGAKLRGASQIIGVDINPEKAE----KAKTFGVT 240 (378)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEECCCHHHHH----HHHHcCCc
Confidence 56789999998854 666655544443333 5899999998864 55667875
No 318
>PRK06914 short chain dehydrogenase; Provisional
Probab=86.35 E-value=12 Score=37.27 Aligned_cols=61 Identities=21% Similarity=0.220 Sum_probs=43.1
Q ss_pred CCeEEeeccCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCC-CceEEEEcchhH
Q 009628 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALK 323 (530)
Q Consensus 262 Ge~VLDmCAAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl-~~i~~~~~Da~k 323 (530)
+.+||=. -|.|+-+.+++..+..+| .|++++++..++..+.+..+..+. ..+.++..|..+
T Consensus 3 ~k~~lIt-Gasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d 65 (280)
T PRK06914 3 KKIAIVT-GASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTD 65 (280)
T ss_pred CCEEEEE-CCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCC
Confidence 3445544 466788888887665555 899999999988887776665554 357788888654
No 319
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=86.24 E-value=1.6 Score=46.81 Aligned_cols=56 Identities=23% Similarity=0.302 Sum_probs=45.0
Q ss_pred HhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC
Q 009628 255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK 312 (530)
Q Consensus 255 ~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~ 312 (530)
.....+||..++|+.|+-|+-+..|+..- +..++++|.+...+.+....+...+++
T Consensus 104 l~~~~~~~~~~~~~~~g~~~~~~~i~~f~--~~~~~Gl~~n~~e~~~~~~~~~~~~l~ 159 (364)
T KOG1269|consen 104 LRESCFPGSKVLDVGTGVGGPSRYIAVFK--KAGVVGLDNNAYEAFRANELAKKAYLD 159 (364)
T ss_pred HhhcCcccccccccCcCcCchhHHHHHhc--cCCccCCCcCHHHHHHHHHHHHHHHhh
Confidence 33456888999999999999999999863 457999999998888777776666554
No 320
>PRK07326 short chain dehydrogenase; Provisional
Probab=86.20 E-value=12 Score=36.10 Aligned_cols=59 Identities=22% Similarity=0.191 Sum_probs=40.5
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchh
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (530)
++.+||=.+ |.|+.+.+++..+..+| +|+++++++.+...+.+..+.. ..+.++..|..
T Consensus 5 ~~~~ilItG-atg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~D~~ 64 (237)
T PRK07326 5 KGKVALITG-GSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK--GNVLGLAADVR 64 (237)
T ss_pred CCCEEEEEC-CCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc--CcEEEEEccCC
Confidence 356777666 57888898887765444 8999999998776655443322 34677777754
No 321
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=85.91 E-value=14 Score=36.02 Aligned_cols=63 Identities=22% Similarity=0.164 Sum_probs=45.0
Q ss_pred CCCCCCeEEeeccCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcch
Q 009628 258 DPQKGERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321 (530)
Q Consensus 258 dpqpGe~VLDmCAAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da 321 (530)
++.+|.+||=.+ |.|+.+.+++..+...| +|+++|++..++..+.+.++..+...+.++..|.
T Consensus 8 ~~~~~k~vlItG-~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~ 71 (247)
T PRK08945 8 DLLKDRIILVTG-AGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDL 71 (247)
T ss_pred cccCCCEEEEeC-CCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecc
Confidence 345677777666 46788888887765445 9999999998888777666665555555665554
No 322
>PHA01634 hypothetical protein
Probab=85.78 E-value=2 Score=39.73 Aligned_cols=47 Identities=17% Similarity=0.113 Sum_probs=39.5
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM 309 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~ 309 (530)
.|.+|+|++|+-|.-++..+ +++.-+|+|++.+++....++++++.+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~--l~GAK~Vva~E~~~kl~k~~een~k~n 74 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFL--LRGASFVVQYEKEEKLRKKWEEVCAYF 74 (156)
T ss_pred cCCEEEEecCCccchhhHHh--hcCccEEEEeccCHHHHHHHHHHhhhh
Confidence 47899999999998887665 356679999999999988888877755
No 323
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=85.58 E-value=16 Score=36.77 Aligned_cols=63 Identities=16% Similarity=0.090 Sum_probs=50.6
Q ss_pred CCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-eEEEEcchhH
Q 009628 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALK 323 (530)
Q Consensus 260 qpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~-i~~~~~Da~k 323 (530)
+.|.+|.|+||=-+--.+.+..- +....++|.|+++.-+....++.+..++.. |++..+|.+.
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~-~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~ 78 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKN-NPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLA 78 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhc-CCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcc
Confidence 46778999999999888777653 334589999999999999999999998865 7777777543
No 324
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=85.41 E-value=7.1 Score=40.10 Aligned_cols=51 Identities=24% Similarity=0.298 Sum_probs=31.5
Q ss_pred CCCCC--CeEEeeccCCChHH---HHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 009628 258 DPQKG--ERILDMCAAPGGKT---TAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC 313 (530)
Q Consensus 258 dpqpG--e~VLDmCAAPGgKT---~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~ 313 (530)
..++| ++||=.+| .|+-. .++|..++ ..+|++++.+..|...+++ ++|.+.
T Consensus 149 ~~~~g~~~~VlI~ga-~g~vG~~aiqlAk~~G-~~~Vi~~~~s~~~~~~~~~---~lGa~~ 204 (345)
T cd08293 149 HITPGANQTMVVSGA-AGACGSLAGQIGRLLG-CSRVVGICGSDEKCQLLKS---ELGFDA 204 (345)
T ss_pred cCCCCCCCEEEEECC-CcHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH---hcCCcE
Confidence 46666 88887665 34444 44555442 1279999999988654433 367654
No 325
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=84.76 E-value=7.7 Score=39.34 Aligned_cols=50 Identities=26% Similarity=0.314 Sum_probs=31.8
Q ss_pred cCCCCCCeEEeeccCC-ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC
Q 009628 257 LDPQKGERILDMCAAP-GGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK 312 (530)
Q Consensus 257 LdpqpGe~VLDmCAAP-GgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~ 312 (530)
..+++|++||..++|. |..+.++|..++ ..|++++.+..+...+ +++|++
T Consensus 161 ~~~~~~~~vli~g~g~vG~~~~~la~~~G--~~V~~~~~s~~~~~~~----~~~g~~ 211 (338)
T cd08254 161 GEVKPGETVLVIGLGGLGLNAVQIAKAMG--AAVIAVDIKEEKLELA----KELGAD 211 (338)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHH----HHhCCC
Confidence 3478899999954321 334445555443 4699999999886554 345654
No 326
>PRK07677 short chain dehydrogenase; Provisional
Probab=84.58 E-value=14 Score=36.30 Aligned_cols=59 Identities=19% Similarity=0.265 Sum_probs=40.9
Q ss_pred CCeEEeeccCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchh
Q 009628 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (530)
Q Consensus 262 Ge~VLDmCAAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (530)
|.++|=.+| .||-+.+++..+...| .|+.++++..++..+.+.++..+ ..+.++..|..
T Consensus 1 ~k~~lItG~-s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~ 60 (252)
T PRK07677 1 EKVVIITGG-SSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFP-GQVLTVQMDVR 60 (252)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEecCC
Confidence 345665554 6777888887764444 89999999988877776665544 34777777754
No 327
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=84.33 E-value=17 Score=35.23 Aligned_cols=59 Identities=24% Similarity=0.266 Sum_probs=41.8
Q ss_pred CCeEEeeccCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchh
Q 009628 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (530)
Q Consensus 262 Ge~VLDmCAAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (530)
+.+|| +.-|.|+.+.+++..+..+| +|+.++++..+...+....+..+ .++..+..|..
T Consensus 4 ~~~vl-ItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~ 63 (258)
T PRK12429 4 GKVAL-VTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAG-GKAIGVAMDVT 63 (258)
T ss_pred CCEEE-EECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEcCCC
Confidence 44566 44557899999998775555 89999999988776665555444 34677777764
No 328
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=83.90 E-value=14 Score=38.74 Aligned_cols=51 Identities=16% Similarity=0.241 Sum_probs=34.6
Q ss_pred hcCCCCCCeEEeeccCCChHHHHHHHHcCCCc--EEEEEeCCHHHHHHHHHHHHHhCCC
Q 009628 256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEG--EVVAVDRSHNKVMDIQKLAAEMGLK 312 (530)
Q Consensus 256 ~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G--~VvA~D~s~~kv~~i~~~a~~~gl~ 312 (530)
...+++|++||=.++ |+-...++++.+..| .|+++|.+..|+.. ++++|.+
T Consensus 181 ~~~~~~g~~VlV~G~--G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~----~~~lGa~ 233 (368)
T cd08300 181 TAKVEPGSTVAVFGL--GAVGLAVIQGAKAAGASRIIGIDINPDKFEL----AKKFGAT 233 (368)
T ss_pred hcCCCCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHH----HHHcCCC
Confidence 356789999998854 666555444443333 69999999998754 4557764
No 329
>PRK07831 short chain dehydrogenase; Provisional
Probab=83.74 E-value=23 Score=34.92 Aligned_cols=63 Identities=25% Similarity=0.270 Sum_probs=43.4
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHH-hCCCceEEEEcchhH
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAE-MGLKCITTYKLDALK 323 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~-~gl~~i~~~~~Da~k 323 (530)
.|.+||=.+++-.|...+++..+...| .|+.+|++..++....+..++ +|-..+..+..|..+
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~ 80 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTS 80 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCC
Confidence 467777777653367777777664444 899999999888777665544 454557777887643
No 330
>PRK05867 short chain dehydrogenase; Provisional
Probab=83.59 E-value=14 Score=36.19 Aligned_cols=61 Identities=18% Similarity=0.199 Sum_probs=42.8
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
.|.+||=.+| .||.+.++|..+...| +|+.++++..+++.+.+..+..+ ..+.++..|..+
T Consensus 8 ~~k~vlVtGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~ 69 (253)
T PRK05867 8 HGKRALITGA-STGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG-GKVVPVCCDVSQ 69 (253)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC-CeEEEEEccCCC
Confidence 4667776665 5677888887765444 89999999988877766655554 346677777543
No 331
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=83.56 E-value=11 Score=39.77 Aligned_cols=51 Identities=20% Similarity=0.299 Sum_probs=34.2
Q ss_pred hcCCCCCCeEEeeccCCChHHHHHHHHcCCCc--EEEEEeCCHHHHHHHHHHHHHhCCC
Q 009628 256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEG--EVVAVDRSHNKVMDIQKLAAEMGLK 312 (530)
Q Consensus 256 ~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G--~VvA~D~s~~kv~~i~~~a~~~gl~ 312 (530)
...+++|++||=.+| |+-...++++.+..| .|+++|.+..|.+ .++++|.+
T Consensus 180 ~~~~~~g~~VlV~G~--G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~----~a~~~Ga~ 232 (368)
T TIGR02818 180 TAKVEEGDTVAVFGL--GGIGLSVIQGARMAKASRIIAIDINPAKFE----LAKKLGAT 232 (368)
T ss_pred hcCCCCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEcCCHHHHH----HHHHhCCC
Confidence 346789999998864 555544443333223 7999999999865 44567764
No 332
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=83.26 E-value=11 Score=39.45 Aligned_cols=52 Identities=25% Similarity=0.314 Sum_probs=35.3
Q ss_pred cCCCCCCeEEeeccC--CChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 009628 257 LDPQKGERILDMCAA--PGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC 313 (530)
Q Consensus 257 LdpqpGe~VLDmCAA--PGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~ 313 (530)
..+++|++||=.+|+ -|..+.++|..++ .+|++++.+..|...++ +++|.+.
T Consensus 154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G--~~Vi~~~~~~~k~~~~~---~~lGa~~ 207 (348)
T PLN03154 154 CSPKKGDSVFVSAASGAVGQLVGQLAKLHG--CYVVGSAGSSQKVDLLK---NKLGFDE 207 (348)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHH---HhcCCCE
Confidence 467899999877662 3445556666653 47999999998865442 2567653
No 333
>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]
Probab=82.98 E-value=1.4 Score=46.89 Aligned_cols=40 Identities=30% Similarity=0.530 Sum_probs=38.4
Q ss_pred CeEEEcchhHHHHH-hccccccCceeeccCCccCCCEEEEE
Q 009628 124 KEVIVSRKCAEAVL-RGAQVYVPGVMACSSHVEKGDVVAVS 163 (530)
Q Consensus 124 k~ViVd~~~~eAVL-rGA~v~aPGil~~~~~i~~Gd~VaV~ 163 (530)
-.|+||..|.+|++ .|..+..-||...+.+|+.||.|.|.
T Consensus 280 G~i~iD~GA~~Al~~~gkSLLpaGV~~V~G~F~rGdvV~i~ 320 (369)
T COG0263 280 GEITVDAGAVEALLEQGKSLLPAGVTSVEGNFSRGDVVRIR 320 (369)
T ss_pred ceEEECccHHHHHHhcCCccccccceEeeeeecCCCEEEEe
Confidence 68999999999999 79999999999999999999999988
No 334
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=82.64 E-value=33 Score=33.08 Aligned_cols=60 Identities=18% Similarity=0.188 Sum_probs=40.9
Q ss_pred CCeEEeeccCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 262 GERILDMCAAPGGKTTAIASLL-RDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 262 Ge~VLDmCAAPGgKT~~iA~lm-~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
+.+||=.++ .|+.+.+++..+ .....|++++++..+...+.+..+..+ ..+.++..|..+
T Consensus 7 ~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~ 67 (239)
T PRK07666 7 GKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYG-VKVVIATADVSD 67 (239)
T ss_pred CCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC-CeEEEEECCCCC
Confidence 456777764 788888888765 334499999999988776655444443 246677777543
No 335
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=82.62 E-value=26 Score=34.80 Aligned_cols=63 Identities=17% Similarity=0.147 Sum_probs=41.7
Q ss_pred CCCeEEeeccCC-ChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 261 KGERILDMCAAP-GGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 261 pGe~VLDmCAAP-GgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
.|.++|=.+|+. +|...++|..+...| +|+.++++......+++.+++..-..+..+..|...
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d 70 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTS 70 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCC
Confidence 467888888884 899999988775444 888887764333445555555432346677777643
No 336
>PRK07063 short chain dehydrogenase; Provisional
Probab=82.56 E-value=30 Score=33.99 Aligned_cols=60 Identities=22% Similarity=0.114 Sum_probs=41.5
Q ss_pred CCeEEeeccCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCC-CceEEEEcchh
Q 009628 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDAL 322 (530)
Q Consensus 262 Ge~VLDmCAAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl-~~i~~~~~Da~ 322 (530)
|.+||=.+| .||...+++..+..+| .|+.+|++..++..+.+..+..+. ..+.++..|..
T Consensus 7 ~k~vlVtGa-s~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 68 (260)
T PRK07063 7 GKVALVTGA-AQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVT 68 (260)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCC
Confidence 567776665 5788888887764444 899999999888777666554221 23667777754
No 337
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=82.49 E-value=3.3 Score=41.51 Aligned_cols=66 Identities=23% Similarity=0.204 Sum_probs=46.5
Q ss_pred EEeccchHHHHHhcCCCC---CCeEEeeccCCChHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHh
Q 009628 244 FLQNLPSIVTAHALDPQK---GERILDMCAAPGGKTTAIASLLRDE-GEVVAVDRSHNKVMDIQKLAAEM 309 (530)
Q Consensus 244 ~lQd~~S~v~~~~Ldpqp---Ge~VLDmCAAPGgKT~~iA~lm~~~-G~VvA~D~s~~kv~~i~~~a~~~ 309 (530)
|.=.++|-+.-+.|...+ .-+++|-|||.|...|-++-|-++. ..|+|-|++...++..++|...+
T Consensus 31 FPVRLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LL 100 (246)
T PF11599_consen 31 FPVRLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLL 100 (246)
T ss_dssp --HHHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCC
T ss_pred ccHHHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhc
Confidence 455667777776665433 3479999999999999888764432 48999999999998888876544
No 338
>PRK06139 short chain dehydrogenase; Provisional
Probab=82.48 E-value=20 Score=37.47 Aligned_cols=60 Identities=15% Similarity=0.269 Sum_probs=43.5
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchh
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRDE-GEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~~-G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (530)
.+..|| +.-|.||...++|..+..+ .+|+.++++..++..+.+.++..|.. +.++..|..
T Consensus 6 ~~k~vl-ITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~-~~~~~~Dv~ 66 (330)
T PRK06139 6 HGAVVV-ITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAE-VLVVPTDVT 66 (330)
T ss_pred CCCEEE-EcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCc-EEEEEeeCC
Confidence 355666 4555788888888876544 48999999999998888877776643 556667754
No 339
>PRK11524 putative methyltransferase; Provisional
Probab=82.33 E-value=2.8 Score=43.03 Aligned_cols=45 Identities=13% Similarity=0.105 Sum_probs=34.9
Q ss_pred CCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHH
Q 009628 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAA 307 (530)
Q Consensus 260 qpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~ 307 (530)
.+|+.|||-++|+|.-+ ..|..+ +-.-+++|+++.-++.++++.+
T Consensus 207 ~~GD~VLDPF~GSGTT~-~AA~~l--gR~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTG-AVAKAS--GRKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred CCCCEEEECCCCCcHHH-HHHHHc--CCCEEEEeCCHHHHHHHHHHHH
Confidence 68999999999999532 334444 3479999999999988887764
No 340
>PRK06949 short chain dehydrogenase; Provisional
Probab=81.99 E-value=26 Score=34.15 Aligned_cols=61 Identities=21% Similarity=0.269 Sum_probs=43.7
Q ss_pred CCCCeEEeeccCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchh
Q 009628 260 QKGERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (530)
Q Consensus 260 qpGe~VLDmCAAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (530)
..|.+||=.+ |.|+...+++..+...| +|++++++..++..+....+..+. .+.++..|..
T Consensus 7 ~~~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~ 68 (258)
T PRK06949 7 LEGKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGG-AAHVVSLDVT 68 (258)
T ss_pred CCCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEecCC
Confidence 3466777666 67888999988876555 799999999988777665544332 3667777764
No 341
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=81.82 E-value=33 Score=33.56 Aligned_cols=61 Identities=25% Similarity=0.280 Sum_probs=43.1
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
.|.+||=.+ |.|+....+|..+..+| +|+.++++..++..+.+..+..|. .+..+..|...
T Consensus 9 ~~k~vlItG-a~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~-~~~~~~~D~~~ 70 (255)
T PRK07523 9 TGRRALVTG-SSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGL-SAHALAFDVTD 70 (255)
T ss_pred CCCEEEEEC-CcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCc-eEEEEEccCCC
Confidence 466777655 57888998888664444 899999999888777666655543 25667777543
No 342
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=81.81 E-value=32 Score=33.37 Aligned_cols=61 Identities=21% Similarity=0.224 Sum_probs=40.8
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCCCc-EEEE-EeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRDEG-EVVA-VDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~~G-~VvA-~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
+|.+||=.+ |.|+-+.+++..+..+| +|+. .+++..+...+.+..+..+. .+..+..|...
T Consensus 3 ~~~~vlItG-a~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~ 65 (250)
T PRK08063 3 SGKVALVTG-SSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGR-KALAVKANVGD 65 (250)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCC-eEEEEEcCCCC
Confidence 355666444 56888999988876666 6665 57888877766665555553 46677777643
No 343
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=81.79 E-value=10 Score=40.34 Aligned_cols=51 Identities=14% Similarity=0.159 Sum_probs=34.2
Q ss_pred HHHHHhcCCCCC----CeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHH
Q 009628 251 IVTAHALDPQKG----ERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQK 304 (530)
Q Consensus 251 ~v~~~~LdpqpG----e~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~ 304 (530)
++...++..-.| ...+|+++|-|.-+-++.... + .|-+++.+..-+.....
T Consensus 163 ~~~~~il~~~~Gf~~v~~avDvGgGiG~v~k~ll~~f-p--~ik~infdlp~v~~~a~ 217 (342)
T KOG3178|consen 163 LVMKKILEVYTGFKGVNVAVDVGGGIGRVLKNLLSKY-P--HIKGINFDLPFVLAAAP 217 (342)
T ss_pred HHHHhhhhhhcccccCceEEEcCCcHhHHHHHHHHhC-C--CCceeecCHHHHHhhhh
Confidence 344455555555 789999999999999998843 3 26666666655544433
No 344
>PRK08324 short chain dehydrogenase; Validated
Probab=81.71 E-value=20 Score=41.33 Aligned_cols=59 Identities=22% Similarity=0.099 Sum_probs=39.0
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchh
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRDE-GEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~~-G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (530)
+|.+||=.+| .|+.+.++|..+... ..|+++|++..++..+.+..... ..+.++..|..
T Consensus 421 ~gk~vLVTGa-sggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~--~~v~~v~~Dvt 480 (681)
T PRK08324 421 AGKVALVTGA-AGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP--DRALGVACDVT 480 (681)
T ss_pred CCCEEEEecC-CCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc--CcEEEEEecCC
Confidence 5677775554 578888888776444 48999999998876554332211 34667777754
No 345
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=81.38 E-value=44 Score=32.63 Aligned_cols=60 Identities=17% Similarity=0.114 Sum_probs=42.3
Q ss_pred CCCeEEeeccCCChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchh
Q 009628 261 KGERILDMCAAPGGKTTAIASLLR-DEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~-~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (530)
.|.+||=.+ |.|+.+.+++..+. ....|+.++++..++..+.+..++.|.. +.++..|..
T Consensus 10 ~~k~ilItG-as~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~Dl~ 70 (256)
T PRK06124 10 AGQVALVTG-SARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGA-AEALAFDIA 70 (256)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCc-eEEEEccCC
Confidence 467788666 46777888887664 3459999999998877776666655532 667777754
No 346
>PRK12829 short chain dehydrogenase; Provisional
Probab=81.32 E-value=22 Score=34.67 Aligned_cols=61 Identities=23% Similarity=0.216 Sum_probs=41.4
Q ss_pred CCCCCeEEeeccCCChHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 259 PQKGERILDMCAAPGGKTTAIASLLRDE-GEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 259 pqpGe~VLDmCAAPGgKT~~iA~lm~~~-G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
..++.+||=.+|. |+.+.+++..+..+ ..|+.++++......+.+...+ . .+..+..|...
T Consensus 8 ~~~~~~vlItGa~-g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~--~-~~~~~~~D~~~ 69 (264)
T PRK12829 8 PLDGLRVLVTGGA-SGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPG--A-KVTATVADVAD 69 (264)
T ss_pred ccCCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc--C-ceEEEEccCCC
Confidence 3467899977775 88888888876444 4899999998776655433221 1 35666777543
No 347
>PRK06101 short chain dehydrogenase; Provisional
Probab=81.31 E-value=36 Score=33.11 Aligned_cols=51 Identities=20% Similarity=0.294 Sum_probs=35.5
Q ss_pred eccCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 268 MCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 268 mCAAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
+.-|.||.+.++|..+..+| +|++++++..+++.+.+. + ..+.++..|..+
T Consensus 6 ItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~----~-~~~~~~~~D~~~ 57 (240)
T PRK06101 6 ITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQ----S-ANIFTLAFDVTD 57 (240)
T ss_pred EEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHh----c-CCCeEEEeeCCC
Confidence 45668999999988875554 899999998876554331 1 245667777543
No 348
>PRK12937 short chain dehydrogenase; Provisional
Probab=81.23 E-value=33 Score=33.08 Aligned_cols=60 Identities=17% Similarity=0.126 Sum_probs=36.3
Q ss_pred CCeEEeeccCCChHHHHHHHHcCCCc-EEEEEeCC-HHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRS-HNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 262 Ge~VLDmCAAPGgKT~~iA~lm~~~G-~VvA~D~s-~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
+.+||=. -|.|+-+.++|..+..+| +|+.+.++ ..+...+.+..+..+ ..+.++..|..+
T Consensus 5 ~~~vlIt-G~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~ 66 (245)
T PRK12937 5 NKVAIVT-GASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAG-GRAIAVQADVAD 66 (245)
T ss_pred CCEEEEe-CCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcC-CeEEEEECCCCC
Confidence 4455544 446899999998876555 67666654 444444544444444 246677777543
No 349
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=81.06 E-value=9.9 Score=40.76 Aligned_cols=47 Identities=15% Similarity=0.110 Sum_probs=31.1
Q ss_pred cCCCCCCeEEeeccCCChHH---HHHHHHcC-CCcEEEEEeCCHHHHHHHHH
Q 009628 257 LDPQKGERILDMCAAPGGKT---TAIASLLR-DEGEVVAVDRSHNKVMDIQK 304 (530)
Q Consensus 257 LdpqpGe~VLDmCAAPGgKT---~~iA~lm~-~~G~VvA~D~s~~kv~~i~~ 304 (530)
..+++|++||=.+++ |+-. .++|..++ +...|+++|.+..|++.+++
T Consensus 171 ~~~~~g~~VlV~G~~-G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~ 221 (410)
T cd08238 171 MGIKPGGNTAILGGA-GPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQR 221 (410)
T ss_pred cCCCCCCEEEEEeCC-CHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHH
Confidence 467899998876532 4444 44455442 22379999999999876655
No 350
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=80.99 E-value=21 Score=37.35 Aligned_cols=51 Identities=24% Similarity=0.315 Sum_probs=34.7
Q ss_pred hcCCCCCCeEEeeccCCChHHHHHHHHcCCCc--EEEEEeCCHHHHHHHHHHHHHhCCC
Q 009628 256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEG--EVVAVDRSHNKVMDIQKLAAEMGLK 312 (530)
Q Consensus 256 ~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G--~VvA~D~s~~kv~~i~~~a~~~gl~ 312 (530)
...+++|++||=.++ |+-...++++.+..| .|+++|++..|.+. ++++|.+
T Consensus 182 ~~~~~~g~~VlV~G~--g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~----~~~~Ga~ 234 (369)
T cd08301 182 VAKVKKGSTVAIFGL--GAVGLAVAEGARIRGASRIIGVDLNPSKFEQ----AKKFGVT 234 (369)
T ss_pred hcCCCCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHH----HHHcCCc
Confidence 356789999988753 666655444443333 79999999988654 4567764
No 351
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=80.48 E-value=49 Score=33.40 Aligned_cols=60 Identities=23% Similarity=0.261 Sum_probs=39.1
Q ss_pred CCeEEeeccCC-ChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 262 GERILDMCAAP-GGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 262 Ge~VLDmCAAP-GgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
|..||=.+|+. +|....+|..+...| .|+.++++......+.+.+++++-. .++..|...
T Consensus 5 ~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~--~~~~~Dv~d 66 (274)
T PRK08415 5 GKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGSD--YVYELDVSK 66 (274)
T ss_pred CcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCc--eEEEecCCC
Confidence 66778777764 688888887764444 8888899864334455555555533 456677543
No 352
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=80.42 E-value=5.9 Score=38.26 Aligned_cols=40 Identities=25% Similarity=0.452 Sum_probs=31.7
Q ss_pred HHHHHHHhcCCCCCEEEEEecCCCCCCCHHHHHHHHHhCCC
Q 009628 463 RMFDQAVQLVRPGGIIVYSTCTINPGENEALVRYALDRYKF 503 (530)
Q Consensus 463 ~ll~~A~~lLkpGG~LVYSTCSi~~~ENE~vV~~~L~~~~~ 503 (530)
..++...+.+++ |.+|.--+|+.|+-.++++..+|+++..
T Consensus 101 ~a~~~i~~~l~~-~~lvV~~STvppGtt~~~~~~ile~~~~ 140 (185)
T PF03721_consen 101 SAIESIAPVLRP-GDLVVIESTVPPGTTEELLKPILEKRSG 140 (185)
T ss_dssp HHHHHHHHHHCS-CEEEEESSSSSTTHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhh-cceEEEccEEEEeeehHhhhhhhhhhcc
Confidence 566666777888 5555556899999999999999998764
No 353
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=80.10 E-value=29 Score=33.92 Aligned_cols=59 Identities=17% Similarity=0.168 Sum_probs=40.3
Q ss_pred CCeEEeeccCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchh
Q 009628 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (530)
Q Consensus 262 Ge~VLDmCAAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (530)
|.++|=.+ |.|+...++|..+..+| +|+.+|++..++..+.+..+..+. .+..+..|..
T Consensus 9 ~k~~lItG-as~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~ 68 (254)
T PRK08085 9 GKNILITG-SAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGI-KAHAAPFNVT 68 (254)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCC-eEEEEecCCC
Confidence 55666555 55888888888775555 999999999887776655554442 3556666654
No 354
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=80.04 E-value=5.5 Score=41.34 Aligned_cols=41 Identities=17% Similarity=0.149 Sum_probs=26.8
Q ss_pred HHHhcCC-CCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHH
Q 009628 253 TAHALDP-QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNK 298 (530)
Q Consensus 253 ~~~~Ldp-qpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~k 298 (530)
+..+++- ..|..+||.+||-|--+. ..+.-.++++|++..-
T Consensus 36 v~qfl~~~~~gsv~~d~gCGngky~~-----~~p~~~~ig~D~c~~l 77 (293)
T KOG1331|consen 36 VRQFLDSQPTGSVGLDVGCGNGKYLG-----VNPLCLIIGCDLCTGL 77 (293)
T ss_pred HHHHHhccCCcceeeecccCCcccCc-----CCCcceeeecchhhhh
Confidence 3344443 358899999999884331 1233478999998753
No 355
>PRK13699 putative methylase; Provisional
Probab=79.87 E-value=4.3 Score=40.53 Aligned_cols=48 Identities=19% Similarity=0.191 Sum_probs=35.9
Q ss_pred CCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh
Q 009628 259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM 309 (530)
Q Consensus 259 pqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~ 309 (530)
-++|+.|||-++|+|. |.+|...- .-..+++|+++.-+..+.++.++.
T Consensus 161 s~~g~~vlDpf~Gsgt--t~~aa~~~-~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 161 THPNAIVLDPFAGSGS--TCVAALQS-GRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCCCEEEeCCCCCCH--HHHHHHHc-CCCEEEEecCHHHHHHHHHHHHHH
Confidence 3689999999999995 33443322 347899999999988887776653
No 356
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=79.68 E-value=1.4 Score=42.26 Aligned_cols=75 Identities=16% Similarity=0.231 Sum_probs=40.6
Q ss_pred CCeEEEcCCCCCCCCc---ccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCCCHHHHHHHHHhCC
Q 009628 426 FDRVLLDAPCSALGLR---PRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEALVRYALDRYK 502 (530)
Q Consensus 426 FDrVLlDaPCSglG~r---p~l~~~~~t~~~l~~~~~~Qr~ll~~A~~lLkpGG~LVYSTCSi~~~ENE~vV~~~L~~~~ 502 (530)
.|.|+.|||.-. |.. ....... .....+......++.++.++|||||.++.. |.-..... ..+..+++.+.
T Consensus 1 VdliitDPPY~~-~~~~~~~~~~~~~---~~~~~y~~~~~~~~~~~~rvLk~~g~~~i~-~~~~~~~~-~~~~~~~~~~g 74 (231)
T PF01555_consen 1 VDLIITDPPYNI-GKDYNNYFDYGDN---KNHEEYLEWMEEWLKECYRVLKPGGSIFIF-IDDREIAG-FLFELALEIFG 74 (231)
T ss_dssp EEEEEE---TSS-SCS-----CSCHC---CHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-E-CCEECT-HHHHHHHHHHT
T ss_pred CCEEEECCCCCC-CCCcchhhhccCC---CCHHHHHHHHHHHHHHHHhhcCCCeeEEEE-ecchhhhH-HHHHHHHHHhh
Confidence 389999999833 322 1111111 224444555678999999999999998654 44433322 35666666554
Q ss_pred Ccee
Q 009628 503 FLSL 506 (530)
Q Consensus 503 ~~~l 506 (530)
.+.+
T Consensus 75 ~~~~ 78 (231)
T PF01555_consen 75 GFFL 78 (231)
T ss_dssp T-EE
T ss_pred hhhe
Confidence 3443
No 357
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=79.48 E-value=18 Score=37.99 Aligned_cols=52 Identities=37% Similarity=0.410 Sum_probs=33.9
Q ss_pred cCCCCCCeEEeeccCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCc
Q 009628 257 LDPQKGERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKC 313 (530)
Q Consensus 257 LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~~ 313 (530)
...++|++||=-+|+ ||-.+.+.+|.+..| .+++.-.+..|.+ .++++|.+-
T Consensus 138 ~~l~~g~~VLV~gaa-GgVG~~aiQlAk~~G~~~v~~~~s~~k~~----~~~~lGAd~ 190 (326)
T COG0604 138 AGLKPGETVLVHGAA-GGVGSAAIQLAKALGATVVAVVSSSEKLE----LLKELGADH 190 (326)
T ss_pred cCCCCCCEEEEecCC-chHHHHHHHHHHHcCCcEEEEecCHHHHH----HHHhcCCCE
Confidence 457889999966554 555554445544445 7788877777654 566777764
No 358
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=79.26 E-value=37 Score=33.11 Aligned_cols=61 Identities=18% Similarity=0.206 Sum_probs=43.3
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
.|.+|| +.-|.|+-+.+++..+...| +|+++++++.+...+.+..+..+. .+.++..|...
T Consensus 6 ~~~~vl-ItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~ 67 (262)
T PRK13394 6 NGKTAV-VTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGG-KAIGVAMDVTN 67 (262)
T ss_pred CCCEEE-EECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCc-eEEEEECCCCC
Confidence 356677 55667888988887765444 899999999888777766665543 36667777543
No 359
>PRK07109 short chain dehydrogenase; Provisional
Probab=78.98 E-value=35 Score=35.62 Aligned_cols=61 Identities=16% Similarity=0.146 Sum_probs=43.2
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
.+..||=.+ |.||...++|..+..+| +|+.++++..++..+.+.+++.|.. +.++..|...
T Consensus 7 ~~k~vlITG-as~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~-~~~v~~Dv~d 68 (334)
T PRK07109 7 GRQVVVITG-ASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGE-ALAVVADVAD 68 (334)
T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEEecCCC
Confidence 345565554 56788888887764444 8999999999988887777766643 5667777643
No 360
>PRK08643 acetoin reductase; Validated
Probab=78.94 E-value=42 Score=32.74 Aligned_cols=59 Identities=24% Similarity=0.219 Sum_probs=40.8
Q ss_pred CeEEeeccCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 263 ERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 263 e~VLDmCAAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
..|| +.-|.|+...+++..+..+| +|+.+|++..+...+.+.....+ ..+.++..|...
T Consensus 3 k~~l-ItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~ 62 (256)
T PRK08643 3 KVAL-VTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDG-GKAIAVKADVSD 62 (256)
T ss_pred CEEE-EECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CeEEEEECCCCC
Confidence 3445 45567888888888775445 89999999988877766655444 236667777543
No 361
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=78.80 E-value=42 Score=33.69 Aligned_cols=61 Identities=23% Similarity=0.177 Sum_probs=40.6
Q ss_pred CCCeEEeeccCC-ChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 261 KGERILDMCAAP-GGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 261 pGe~VLDmCAAP-GgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
.|.++|=.+|+. +|....+|..+...| .|+.++++....+.+.+..+++|. ...+..|...
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~--~~~~~~Dv~d 68 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGS--DFVLPCDVED 68 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCC--ceEEeCCCCC
Confidence 367788888876 478888887775455 888889886555555555555553 2356677543
No 362
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.65 E-value=32 Score=33.20 Aligned_cols=59 Identities=22% Similarity=0.237 Sum_probs=38.9
Q ss_pred CCeEEeeccCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 262 Ge~VLDmCAAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
+.+||=.+ |.|+...+++..+...| +|++++++..++..+...... + ..+.++..|...
T Consensus 5 ~~~vlItG-asg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~-~~~~~~~~D~~~ 64 (251)
T PRK07231 5 GKVAIVTG-ASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA-G-GRAIAVAADVSD 64 (251)
T ss_pred CcEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-C-CeEEEEECCCCC
Confidence 44566554 45788888887665444 899999999887766554433 2 236677777643
No 363
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=78.24 E-value=52 Score=31.65 Aligned_cols=59 Identities=25% Similarity=0.262 Sum_probs=40.3
Q ss_pred CCeEEeeccCCChHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchh
Q 009628 262 GERILDMCAAPGGKTTAIASLLRDE-GEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (530)
Q Consensus 262 Ge~VLDmCAAPGgKT~~iA~lm~~~-G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (530)
+.+||=.+ |.|+-..+++..+..+ .+|++++++..++..+.+..+..+ ..+.++..|..
T Consensus 6 ~~~ilItG-asg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~ 65 (251)
T PRK12826 6 GRVALVTG-AARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAG-GKARARQVDVR 65 (251)
T ss_pred CCEEEEcC-CCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CeEEEEECCCC
Confidence 56788555 4688888888766444 489999999887766655554443 23677777754
No 364
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=78.24 E-value=5.5 Score=41.10 Aligned_cols=55 Identities=27% Similarity=0.285 Sum_probs=40.5
Q ss_pred CCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhHH
Q 009628 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (530)
Q Consensus 260 qpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k~ 324 (530)
.||+.-.|++|+|||.|-++.. ..-.|+|+|.-+.+-. .|.-.-|+-...|.++.
T Consensus 210 ~~~M~avDLGAcPGGWTyqLVk---r~m~V~aVDng~ma~s-------L~dtg~v~h~r~DGfk~ 264 (358)
T COG2933 210 APGMWAVDLGACPGGWTYQLVK---RNMRVYAVDNGPMAQS-------LMDTGQVTHLREDGFKF 264 (358)
T ss_pred cCCceeeecccCCCccchhhhh---cceEEEEeccchhhhh-------hhcccceeeeeccCccc
Confidence 5899999999999999987654 3569999998764321 12223477788888774
No 365
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=78.23 E-value=26 Score=36.73 Aligned_cols=50 Identities=16% Similarity=0.210 Sum_probs=33.7
Q ss_pred cCCCCCCeEEeeccCCChHHHHHHHHcCCCc--EEEEEeCCHHHHHHHHHHHHHhCCC
Q 009628 257 LDPQKGERILDMCAAPGGKTTAIASLLRDEG--EVVAVDRSHNKVMDIQKLAAEMGLK 312 (530)
Q Consensus 257 LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G--~VvA~D~s~~kv~~i~~~a~~~gl~ 312 (530)
..+++|++||=.++ |+-...++++.+..| .|+++|.+..|.+.+ +++|.+
T Consensus 180 ~~~~~g~~vlV~G~--g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~----~~~ga~ 231 (365)
T cd08277 180 AKVEPGSTVAVFGL--GAVGLSAIMGAKIAGASRIIGVDINEDKFEKA----KEFGAT 231 (365)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH----HHcCCC
Confidence 46789999998743 666555444433333 699999999886544 556764
No 366
>PRK07890 short chain dehydrogenase; Provisional
Probab=78.17 E-value=51 Score=32.04 Aligned_cols=60 Identities=17% Similarity=0.234 Sum_probs=41.7
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchh
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (530)
.+.+||= .-|.|+.+.++|..+..+| +|+.+++++.+...+.+..+..+. .+..+..|..
T Consensus 4 ~~k~vlI-tGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~ 64 (258)
T PRK07890 4 KGKVVVV-SGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGR-RALAVPTDIT 64 (258)
T ss_pred CCCEEEE-ECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCC-ceEEEecCCC
Confidence 3566774 4457888999988775445 899999999887776655554442 3666777754
No 367
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=77.87 E-value=4 Score=42.66 Aligned_cols=40 Identities=15% Similarity=0.085 Sum_probs=30.9
Q ss_pred EEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHH
Q 009628 265 ILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLA 306 (530)
Q Consensus 265 VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a 306 (530)
|+|++||-||.+..+-+. +---|.|+|+++..++..+.|.
T Consensus 1 vidLF~G~GG~~~Gl~~a--G~~~~~a~e~~~~a~~ty~~N~ 40 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA--GFKCVFASEIDKYAQKTYEANF 40 (315)
T ss_pred CEEEecCccHHHHHHHHc--CCeEEEEEeCCHHHHHHHHHhC
Confidence 689999999999877653 1224668999999988777664
No 368
>PRK08278 short chain dehydrogenase; Provisional
Probab=77.85 E-value=27 Score=34.96 Aligned_cols=61 Identities=16% Similarity=0.183 Sum_probs=37.6
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCCCc-EEEEEeCCHHH-------HHHHHHHHHHhCCCceEEEEcchhH
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNK-------VMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~~G-~VvA~D~s~~k-------v~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
.|.+|| +.-|.||...++|..+..+| +|++++++..+ +..+.+..+..+. .+.++..|...
T Consensus 5 ~~k~vl-ItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~D~~~ 73 (273)
T PRK08278 5 SGKTLF-ITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGG-QALPLVGDVRD 73 (273)
T ss_pred CCCEEE-EECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCC-ceEEEEecCCC
Confidence 355666 45557889999988764444 89999998653 3333333333332 36677777643
No 369
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=77.82 E-value=24 Score=35.17 Aligned_cols=48 Identities=25% Similarity=0.305 Sum_probs=30.7
Q ss_pred CCCCCCeEEeeccCCChH---HHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC
Q 009628 258 DPQKGERILDMCAAPGGK---TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK 312 (530)
Q Consensus 258 dpqpGe~VLDmCAAPGgK---T~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~ 312 (530)
..++|++||=.+| +|+- +.++|..++ ..|+++..+..+.. .++++|.+
T Consensus 139 ~~~~g~~vlV~ga-~g~~g~~~~~~a~~~g--~~v~~~~~~~~~~~----~~~~~g~~ 189 (320)
T cd08243 139 GLQPGDTLLIRGG-TSSVGLAALKLAKALG--ATVTATTRSPERAA----LLKELGAD 189 (320)
T ss_pred CCCCCCEEEEEcC-CChHHHHHHHHHHHcC--CEEEEEeCCHHHHH----HHHhcCCc
Confidence 4678999886554 4444 445555543 46999999987754 34456764
No 370
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=77.76 E-value=68 Score=32.20 Aligned_cols=60 Identities=25% Similarity=0.234 Sum_probs=39.4
Q ss_pred CCCeEEeeccC-CChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchh
Q 009628 261 KGERILDMCAA-PGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (530)
Q Consensus 261 pGe~VLDmCAA-PGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (530)
.|..+|=.+|+ .+|...++|..+...| .|+.++++....+.+.++++++|- ..++..|..
T Consensus 9 ~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~~--~~~~~~Dl~ 70 (272)
T PRK08159 9 AGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELGA--FVAGHCDVT 70 (272)
T ss_pred cCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcCC--ceEEecCCC
Confidence 35677777776 5899999998885555 777777764334455555565542 345677754
No 371
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=77.68 E-value=61 Score=33.37 Aligned_cols=72 Identities=21% Similarity=0.331 Sum_probs=50.8
Q ss_pred eccchHHHH-----HhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcc
Q 009628 246 QNLPSIVTA-----HALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320 (530)
Q Consensus 246 Qd~~S~v~~-----~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~D 320 (530)
|++|..+.. ..+++ |.+ +--.||+-- ..+.+++.+-++.+++..++-...++++.+ +-.++.+.+.|
T Consensus 71 ~~lpa~l~~yl~~i~~lN~--~~~---l~~YpGSP~-lA~~llR~qDRl~l~ELHp~D~~~L~~~f~--~d~~vrv~~~D 142 (279)
T COG2961 71 ADLPAELEPYLDAVRQLNP--GGG---LRYYPGSPL-LARQLLREQDRLVLTELHPSDAPLLRNNFA--GDRRVRVLRGD 142 (279)
T ss_pred CCchHHHHHHHHHHHHhCC--CCC---cccCCCCHH-HHHHHcchhceeeeeecCccHHHHHHHHhC--CCcceEEEecC
Confidence 667766643 33444 443 455677644 345666888899999999998888888776 55678999999
Q ss_pred hhHHH
Q 009628 321 ALKAV 325 (530)
Q Consensus 321 a~k~v 325 (530)
....+
T Consensus 143 G~~~l 147 (279)
T COG2961 143 GFLAL 147 (279)
T ss_pred cHHHH
Confidence 87754
No 372
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=77.63 E-value=46 Score=32.62 Aligned_cols=60 Identities=20% Similarity=0.215 Sum_probs=42.5
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchh
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (530)
.|.+||=.+ |.|+-..++|..+...| .|+.++++..++..+.+..+..+. .+..+..|..
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~-~~~~~~~Dl~ 71 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGI-DALWIAADVA 71 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEccCC
Confidence 466777666 56889999998875445 899999999888777665554432 3556777754
No 373
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=77.41 E-value=12 Score=41.59 Aligned_cols=55 Identities=18% Similarity=0.243 Sum_probs=34.4
Q ss_pred eEEeeccCCChHHHHHHHHcCCCc--EEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 264 RILDMCAAPGGKTTAIASLLRDEG--EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 264 ~VLDmCAAPGgKT~~iA~lm~~~G--~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
++|=++||-=- |...+.+.| .|+.+|.|+-.++.++..-+ ..-.-++...+|++.
T Consensus 51 ~~l~lGCGNS~----l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~-~~~~~~~~~~~d~~~ 107 (482)
T KOG2352|consen 51 KILQLGCGNSE----LSEHLYKNGFEDITNIDSSSVVVAAMQVRNA-KERPEMQMVEMDMDQ 107 (482)
T ss_pred eeEeecCCCCH----HHHHHHhcCCCCceeccccHHHHHHHHhccc-cCCcceEEEEecchh
Confidence 78888887653 334444445 79999999999988764322 222335555665543
No 374
>PRK06197 short chain dehydrogenase; Provisional
Probab=77.09 E-value=40 Score=34.24 Aligned_cols=62 Identities=21% Similarity=0.139 Sum_probs=41.3
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHh-CCCceEEEEcchhH
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEM-GLKCITTYKLDALK 323 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~-gl~~i~~~~~Da~k 323 (530)
.|.+|| +.-|.||...++|..+...| +|+.++++..+...+.+...+. +-..+.++..|...
T Consensus 15 ~~k~vl-ItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d 78 (306)
T PRK06197 15 SGRVAV-VTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTS 78 (306)
T ss_pred CCCEEE-EcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCC
Confidence 466777 45557889999988765445 8999999988876654444322 22346677777543
No 375
>PRK05599 hypothetical protein; Provisional
Probab=76.86 E-value=48 Score=32.55 Aligned_cols=55 Identities=18% Similarity=0.212 Sum_probs=41.1
Q ss_pred ccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 269 CAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 269 CAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
.-|.+|.+.++|..+.....|+.++++..+++.+.+.+++.|-..+.++..|...
T Consensus 6 tGas~GIG~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d 60 (246)
T PRK05599 6 LGGTSDIAGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQD 60 (246)
T ss_pred EeCccHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCC
Confidence 3446788888888776556899999999998887777766664456777888644
No 376
>PRK08251 short chain dehydrogenase; Provisional
Probab=76.76 E-value=72 Score=30.87 Aligned_cols=60 Identities=15% Similarity=0.170 Sum_probs=41.1
Q ss_pred CeEEeeccCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhC-CCceEEEEcchhH
Q 009628 263 ERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMG-LKCITTYKLDALK 323 (530)
Q Consensus 263 e~VLDmCAAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~g-l~~i~~~~~Da~k 323 (530)
.+||=.+ |.||.+.++|..+..+| .|+.++++..++..+........ -..+.+++.|...
T Consensus 3 k~vlItG-as~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 64 (248)
T PRK08251 3 QKILITG-ASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVND 64 (248)
T ss_pred CEEEEEC-CCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCC
Confidence 4566444 57888988887775444 89999999998887765554432 2246777777643
No 377
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=76.69 E-value=27 Score=31.59 Aligned_cols=53 Identities=23% Similarity=0.203 Sum_probs=38.5
Q ss_pred cCCChHHHHHHHHcCCC--cEEEEEeCC--HHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 270 AAPGGKTTAIASLLRDE--GEVVAVDRS--HNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 270 AAPGgKT~~iA~lm~~~--G~VvA~D~s--~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
-|.||....+|..+-.+ ..|+.+.++ ..+...+.+..+..+ ..+.++..|...
T Consensus 7 Ga~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~-~~~~~~~~D~~~ 63 (167)
T PF00106_consen 7 GASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG-AKITFIECDLSD 63 (167)
T ss_dssp TTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT-SEEEEEESETTS
T ss_pred CCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc-cccccccccccc
Confidence 45578888887766333 478888998 777777766666667 678889888653
No 378
>PRK09242 tropinone reductase; Provisional
Probab=76.57 E-value=62 Score=31.62 Aligned_cols=61 Identities=21% Similarity=0.168 Sum_probs=40.1
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHh-CCCceEEEEcchh
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRDE-GEVVAVDRSHNKVMDIQKLAAEM-GLKCITTYKLDAL 322 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~~-G~VvA~D~s~~kv~~i~~~a~~~-gl~~i~~~~~Da~ 322 (530)
.|.++|=.+| .|+.+.+++..+... -+|++++++..++..+.+..+.. +-..+..+..|..
T Consensus 8 ~~k~~lItGa-~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~ 70 (257)
T PRK09242 8 DGQTALITGA-SKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVS 70 (257)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCC
Confidence 3566776665 577778887766443 48999999998877666555443 1123666677754
No 379
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=76.53 E-value=64 Score=32.03 Aligned_cols=60 Identities=27% Similarity=0.230 Sum_probs=35.8
Q ss_pred CCeEEeeccCCC-hHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 262 GERILDMCAAPG-GKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 262 Ge~VLDmCAAPG-gKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
|..+|=-+|+.| |...++|..+...| .|+..+++....+.++++.++.|. ...+..|..+
T Consensus 8 ~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g~--~~~~~~Dv~~ 69 (260)
T PRK06603 8 GKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIGC--NFVSELDVTN 69 (260)
T ss_pred CcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcCC--ceEEEccCCC
Confidence 566776777665 67777877665444 788888875333344555554442 2245666543
No 380
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=76.40 E-value=53 Score=32.90 Aligned_cols=58 Identities=26% Similarity=0.319 Sum_probs=35.3
Q ss_pred CCeEEeeccCC-ChHHHHHHHHcCCCc-EEEEEeCCHHHH-HHHHHHHHHhCCCceEEEEcchh
Q 009628 262 GERILDMCAAP-GGKTTAIASLLRDEG-EVVAVDRSHNKV-MDIQKLAAEMGLKCITTYKLDAL 322 (530)
Q Consensus 262 Ge~VLDmCAAP-GgKT~~iA~lm~~~G-~VvA~D~s~~kv-~~i~~~a~~~gl~~i~~~~~Da~ 322 (530)
|..+|=.+|+. +|...++|..+...| .|+.++++. ++ ..+.+...+.+ .+.++..|..
T Consensus 6 ~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~-~~~~~~~~~~~~~~--~~~~~~~Dl~ 66 (262)
T PRK07984 6 GKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND-KLKGRVEEFAAQLG--SDIVLPCDVA 66 (262)
T ss_pred CCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecch-hHHHHHHHHHhccC--CceEeecCCC
Confidence 56788888887 488888887775444 788888873 33 22333333322 2345666654
No 381
>PRK07832 short chain dehydrogenase; Provisional
Probab=76.40 E-value=43 Score=33.28 Aligned_cols=53 Identities=23% Similarity=0.187 Sum_probs=35.2
Q ss_pred cCCChHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchh
Q 009628 270 AAPGGKTTAIASLLRDE-GEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (530)
Q Consensus 270 AAPGgKT~~iA~lm~~~-G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (530)
-|.||.+.+++..+... ..|+.++++..+++.+.+.++..+-..+..+..|..
T Consensus 7 Gas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 60 (272)
T PRK07832 7 GAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTVPEHRALDIS 60 (272)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCC
Confidence 35678888887766443 489999999888776655555444433455566653
No 382
>PRK08339 short chain dehydrogenase; Provisional
Probab=76.39 E-value=69 Score=31.81 Aligned_cols=61 Identities=13% Similarity=0.178 Sum_probs=40.9
Q ss_pred CCeEEeeccCCChHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 262 GERILDMCAAPGGKTTAIASLLRDE-GEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 262 Ge~VLDmCAAPGgKT~~iA~lm~~~-G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
|.++|=.+ |.||...++|..+... .+|+.+|++..++..+.+..+...-..+.++..|...
T Consensus 8 ~k~~lItG-as~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~ 69 (263)
T PRK08339 8 GKLAFTTA-SSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTK 69 (263)
T ss_pred CCEEEEeC-CCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCC
Confidence 55666554 4577888888776444 4899999999888776655443321246777777643
No 383
>PRK07062 short chain dehydrogenase; Provisional
Probab=76.17 E-value=82 Score=30.91 Aligned_cols=62 Identities=16% Similarity=0.142 Sum_probs=41.0
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHhC-CCceEEEEcchhH
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRD-EGEVVAVDRSHNKVMDIQKLAAEMG-LKCITTYKLDALK 323 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~-~G~VvA~D~s~~kv~~i~~~a~~~g-l~~i~~~~~Da~k 323 (530)
.|..+|=.+| .||.+.++|..+.. ...|++++++..++..+.+...+.. -..+..+..|...
T Consensus 7 ~~k~~lItGa-s~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 70 (265)
T PRK07062 7 EGRVAVVTGG-SSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLD 70 (265)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCC
Confidence 3566776664 56777788777643 4489999999988877665554432 1246667777543
No 384
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=76.09 E-value=19 Score=39.19 Aligned_cols=43 Identities=19% Similarity=0.360 Sum_probs=32.4
Q ss_pred HHHHHHHhcCCCCCEEEEEecCCCCCCCHHHHHHHHHhCCCcee
Q 009628 463 RMFDQAVQLVRPGGIIVYSTCTINPGENEALVRYALDRYKFLSL 506 (530)
Q Consensus 463 ~ll~~A~~lLkpGG~LVYSTCSi~~~ENE~vV~~~L~~~~~~~l 506 (530)
+-.+...+.||+|-.+|+ .-|..|+-.|+++.+.|+..+++..
T Consensus 109 ~aa~sIa~~L~kG~LVIl-EST~~PGTTe~v~~plle~~sgL~~ 151 (436)
T COG0677 109 SAARSIAPVLKKGDLVIL-ESTTPPGTTEEVVKPLLEERSGLKF 151 (436)
T ss_pred HHHHHHHHhcCCCCEEEE-ecCCCCCcHHHHHHHHHhhcCCCcc
Confidence 344555677999655554 5789999999999999998776654
No 385
>PRK06181 short chain dehydrogenase; Provisional
Probab=75.95 E-value=68 Score=31.41 Aligned_cols=57 Identities=19% Similarity=0.261 Sum_probs=39.4
Q ss_pred eEEeeccCCChHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchh
Q 009628 264 RILDMCAAPGGKTTAIASLL-RDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (530)
Q Consensus 264 ~VLDmCAAPGgKT~~iA~lm-~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (530)
+|| +.-|.|+.+.+++..+ ....+|+++++++.+...+.+..+..+ .++.++..|..
T Consensus 3 ~vl-VtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~ 60 (263)
T PRK06181 3 VVI-ITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHG-GEALVVPTDVS 60 (263)
T ss_pred EEE-EecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCC
Confidence 455 3446788888888655 334599999999988777666555544 34667777754
No 386
>PRK06172 short chain dehydrogenase; Provisional
Probab=74.71 E-value=78 Score=30.78 Aligned_cols=60 Identities=23% Similarity=0.160 Sum_probs=43.1
Q ss_pred CCeEEeeccCCChHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 262 GERILDMCAAPGGKTTAIASLLRDE-GEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 262 Ge~VLDmCAAPGgKT~~iA~lm~~~-G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
|.+||=.+| .|+.+.++|..+... .+|+.++++..++..+.+..++.+- .+..++.|...
T Consensus 7 ~k~ilItGa-s~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~ 67 (253)
T PRK06172 7 GKVALVTGG-AAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGG-EALFVACDVTR 67 (253)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEcCCCC
Confidence 567777665 677888887766444 4899999999888777766665552 37778888654
No 387
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=74.69 E-value=62 Score=34.92 Aligned_cols=35 Identities=29% Similarity=0.543 Sum_probs=26.1
Q ss_pred HHHHhcCCCCCEEEEEecCCCCCCCHHHHHHHHHhC
Q 009628 466 DQAVQLVRPGGIIVYSTCTINPGENEALVRYALDRY 501 (530)
Q Consensus 466 ~~A~~lLkpGG~LVYSTCSi~~~ENE~vV~~~L~~~ 501 (530)
+...+.+++|-+++.. .|+.|+..+.+...++++.
T Consensus 104 ~~i~~~l~~g~lvi~~-STv~pgt~~~l~~~~~~~~ 138 (411)
T TIGR03026 104 ETIAKHLRKGATVVLE-STVPPGTTEEVVKPILERA 138 (411)
T ss_pred HHHHHhcCCCCEEEEe-CcCCCCchHHHHHHHHHhh
Confidence 4445567887666654 5999999999998888774
No 388
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=74.54 E-value=61 Score=31.95 Aligned_cols=59 Identities=15% Similarity=0.130 Sum_probs=37.6
Q ss_pred CCCeEEeeccCC-ChHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 261 KGERILDMCAAP-GGKTTAIASLLRDE-GEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 261 pGe~VLDmCAAP-GgKT~~iA~lm~~~-G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
.|.++|=.+|+. +|....+|..+... .+|+.++++. +.. +.++++.-..+.++..|..+
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~-~~~---~~~~~~~~~~~~~~~~Dl~~ 66 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQND-RMK---KSLQKLVDEEDLLVECDVAS 66 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCch-HHH---HHHHhhccCceeEEeCCCCC
Confidence 467888888875 78888888777444 4899999874 322 22233222346677777643
No 389
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=74.53 E-value=22 Score=36.33 Aligned_cols=51 Identities=27% Similarity=0.341 Sum_probs=30.6
Q ss_pred hcCCCCCCeEEeeccCCChHHHHHHHHcCCCc--EEEEEeCCHHHHHHHHHHHHHhCCC
Q 009628 256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEG--EVVAVDRSHNKVMDIQKLAAEMGLK 312 (530)
Q Consensus 256 ~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G--~VvA~D~s~~kv~~i~~~a~~~gl~ 312 (530)
.+...+|++||-..+ |+-...++++.+..| .|++++.++.+... ++.+|.+
T Consensus 160 ~~~~~~~~~VLI~g~--g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~----~~~~g~~ 212 (339)
T cd08232 160 RAGDLAGKRVLVTGA--GPIGALVVAAARRAGAAEIVATDLADAPLAV----ARAMGAD 212 (339)
T ss_pred hcCCCCCCEEEEECC--CHHHHHHHHHHHHcCCcEEEEECCCHHHHHH----HHHcCCC
Confidence 345458999998543 554444433333223 68999999887653 3445543
No 390
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=74.15 E-value=36 Score=36.51 Aligned_cols=49 Identities=22% Similarity=0.194 Sum_probs=31.4
Q ss_pred cCCCCCCeEEeeccCCChHHHH---HHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC
Q 009628 257 LDPQKGERILDMCAAPGGKTTA---IASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK 312 (530)
Q Consensus 257 LdpqpGe~VLDmCAAPGgKT~~---iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~ 312 (530)
..+++|++||=.++ |+-... +|..++ ...|++.|++..|+. .++++|.+
T Consensus 181 ~~~~~g~~VlV~G~--G~iG~~aiqlAk~~G-a~~vi~~d~~~~r~~----~a~~~Ga~ 232 (393)
T TIGR02819 181 AGVGPGSTVYIAGA--GPVGLAAAASAQLLG-AAVVIVGDLNPARLA----QARSFGCE 232 (393)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHcC-CceEEEeCCCHHHHH----HHHHcCCe
Confidence 46789999887544 555444 444443 235677899888864 45667864
No 391
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=74.02 E-value=66 Score=30.69 Aligned_cols=59 Identities=24% Similarity=0.202 Sum_probs=41.4
Q ss_pred CCeEEeeccCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchh
Q 009628 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (530)
Q Consensus 262 Ge~VLDmCAAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (530)
+.+||=.+| .|+...+++..+..+| +|+.+++++.+...+....+..+. .+.++..|..
T Consensus 5 ~~~ilItGa-sg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~ 64 (246)
T PRK05653 5 GKTALVTGA-SRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGG-EARVLVFDVS 64 (246)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCC-ceEEEEccCC
Confidence 457775554 7999999987764444 799999999888766655554442 2666667754
No 392
>PRK05875 short chain dehydrogenase; Provisional
Probab=74.00 E-value=76 Score=31.37 Aligned_cols=61 Identities=16% Similarity=0.157 Sum_probs=41.9
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhC-CCceEEEEcchh
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMG-LKCITTYKLDAL 322 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~g-l~~i~~~~~Da~ 322 (530)
.+.+||=.+| .|+.+.+++..+..+| +|++++++..+...+.+..+..+ ...+.++..|..
T Consensus 6 ~~k~vlItGa-sg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~ 68 (276)
T PRK05875 6 QDRTYLVTGG-GSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVT 68 (276)
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCC
Confidence 3667886664 5888999988775455 89999999888776655444332 234677777754
No 393
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=73.88 E-value=47 Score=36.05 Aligned_cols=44 Identities=9% Similarity=0.083 Sum_probs=31.1
Q ss_pred CCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHH
Q 009628 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQK 304 (530)
Q Consensus 260 qpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~ 304 (530)
+.-++||=++-|-|-..-.|... ..-++|+-+|.++++++..++
T Consensus 288 ~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~ 331 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASH 331 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhh
Confidence 45678999987777544444331 235799999999999876653
No 394
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=73.53 E-value=3.8 Score=41.45 Aligned_cols=51 Identities=10% Similarity=0.160 Sum_probs=37.0
Q ss_pred hHHHHHhcCCC-CCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHH
Q 009628 250 SIVTAHALDPQ-KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDI 302 (530)
Q Consensus 250 S~v~~~~Ldpq-pGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i 302 (530)
-.++-++.|.+ .-..++|++|+-|...-||.. .+-+.++-+|-|-.+++..
T Consensus 60 ~rlaDrvfD~kk~fp~a~diGcs~G~v~rhl~~--e~vekli~~DtS~~M~~s~ 111 (325)
T KOG2940|consen 60 DRLADRVFDCKKSFPTAFDIGCSLGAVKRHLRG--EGVEKLIMMDTSYDMIKSC 111 (325)
T ss_pred HHHHHHHHHHhhhCcceeecccchhhhhHHHHh--cchhheeeeecchHHHHHh
Confidence 33455555654 456799999999988888755 3457899999998876543
No 395
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=73.48 E-value=29 Score=36.40 Aligned_cols=51 Identities=18% Similarity=0.276 Sum_probs=34.0
Q ss_pred hcCCCCCCeEEeeccCCChHHHHHHHHcCCCc--EEEEEeCCHHHHHHHHHHHHHhCCC
Q 009628 256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEG--EVVAVDRSHNKVMDIQKLAAEMGLK 312 (530)
Q Consensus 256 ~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G--~VvA~D~s~~kv~~i~~~a~~~gl~ 312 (530)
...+++|++||=. |.|+-...++++.+..| .|++++++..|...+ +++|.+
T Consensus 178 ~~~~~~g~~vlI~--g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~----~~~g~~ 230 (365)
T cd05279 178 TAKVTPGSTCAVF--GLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKA----KQLGAT 230 (365)
T ss_pred ccCCCCCCEEEEE--CCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH----HHhCCC
Confidence 4567899999886 34666655554444334 588999999886544 456764
No 396
>PRK07478 short chain dehydrogenase; Provisional
Probab=73.43 E-value=89 Score=30.45 Aligned_cols=59 Identities=20% Similarity=0.149 Sum_probs=40.7
Q ss_pred CCeEEeeccCCChHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchh
Q 009628 262 GERILDMCAAPGGKTTAIASLLRDE-GEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (530)
Q Consensus 262 Ge~VLDmCAAPGgKT~~iA~lm~~~-G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (530)
|.++|= .-|.||...++|..+... .+|+.++++..++..+.+..+..+. .+.++..|..
T Consensus 6 ~k~~lI-tGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~ 65 (254)
T PRK07478 6 GKVAII-TGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGG-EAVALAGDVR 65 (254)
T ss_pred CCEEEE-eCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEcCCC
Confidence 456664 445588888888766444 4899999999988877766665553 3566677753
No 397
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=73.37 E-value=37 Score=35.08 Aligned_cols=52 Identities=15% Similarity=0.192 Sum_probs=34.5
Q ss_pred HhcCCCCCCeEEeeccCCChHHHHHHHHcCCCc--EEEEEeCCHHHHHHHHHHHHHhCCC
Q 009628 255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEG--EVVAVDRSHNKVMDIQKLAAEMGLK 312 (530)
Q Consensus 255 ~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G--~VvA~D~s~~kv~~i~~~a~~~gl~ 312 (530)
...+.++|++||=.+ .|+-...++++.+..| .|++++.+..+...+ +++|.+
T Consensus 166 ~~~~~~~g~~vlI~g--~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~----~~~ga~ 219 (351)
T cd08233 166 RRSGFKPGDTALVLG--AGPIGLLTILALKAAGASKIIVSEPSEARRELA----EELGAT 219 (351)
T ss_pred HhcCCCCCCEEEEEC--CCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH----HHhCCC
Confidence 345678899988774 3666655555544444 799999999887544 445654
No 398
>PRK05717 oxidoreductase; Validated
Probab=73.27 E-value=58 Score=31.84 Aligned_cols=58 Identities=26% Similarity=0.287 Sum_probs=39.7
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
.|.+||=.++ .|+.+.++|..+..+| +|+.+|++..+...+ ++..+ ..+.++..|...
T Consensus 9 ~~k~vlItG~-sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~---~~~~~-~~~~~~~~Dl~~ 67 (255)
T PRK05717 9 NGRVALVTGA-ARGIGLGIAAWLIAEGWQVVLADLDRERGSKV---AKALG-ENAWFIAMDVAD 67 (255)
T ss_pred CCCEEEEeCC-cchHHHHHHHHHHHcCCEEEEEcCCHHHHHHH---HHHcC-CceEEEEccCCC
Confidence 3567885555 5888999988875444 999999998776543 33333 346677888654
No 399
>PRK08557 hypothetical protein; Provisional
Probab=72.91 E-value=10 Score=41.41 Aligned_cols=155 Identities=17% Similarity=0.214 Sum_probs=85.1
Q ss_pred CCeEEEcchhHHHHHhccccccCceeeccC--CccCCCEEEEEEcccCCcCCCCCcccccccccccCCCCCCCcccCCce
Q 009628 123 PKEVIVSRKCAEAVLRGAQVYVPGVMACSS--HVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGL 200 (530)
Q Consensus 123 ~k~ViVd~~~~eAVLrGA~v~aPGil~~~~--~i~~Gd~VaV~~~~~~~~~~~~w~~~~~rg~~~~~~~~~~~~~~~~gv 200 (530)
.+.|+|+. +.-.|.|+.|..++|..+.+ .++.||.|.|. .+-
T Consensus 77 ~~~~~~~~--~~~~~~g~~v~~~~~~~~~~~~~~~~~~~v~~~----------------------------------~~~ 120 (417)
T PRK08557 77 EPKIKLKP--TKRRLKGKYIKEELIENPEELNEILENDYVGVE----------------------------------IGN 120 (417)
T ss_pred Cceeeecc--cccccCCccccccccccccccccCCCCCEEEEe----------------------------------cCC
Confidence 45667764 44567999999999998887 89999977766 145
Q ss_pred EEeecccccCcccccccCCceeeecCCccccCCCcccccc-ceEEEeccch---HHHHHhcCCCCCCeEEeeccCCChHH
Q 009628 201 YIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLE-GEIFLQNLPS---IVTAHALDPQKGERILDMCAAPGGKT 276 (530)
Q Consensus 201 ~Vg~Gia~mSreelf~~p~GlaV~~~~~v~~lP~~~~~~~-G~i~lQd~~S---~v~~~~LdpqpGe~VLDmCAAPGgKT 276 (530)
++|+|++.++...+.....|-.+ ..+...++.+ ..-.++.+-. .+.-.++.--+.....=+.|-+|||-
T Consensus 121 ~~gvg~~~~~~~k~~~~~~~~~~-------~~~~~~~~i~~n~~~l~~~e~~ai~~i~~~~~~~~~~~~~i~vsfSGGKD 193 (417)
T PRK08557 121 FLGVGVKKEDRIKIKDLSLKKEL-------DFEKIEDYLEKNKERIEKLEENSLSILKDYIEKYKNKGYAINASFSGGKD 193 (417)
T ss_pred EEEEEEeecceEEEEecccCCCC-------CcccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCCCcEEEEEcCCcHH
Confidence 88999988876666554333211 1111111110 0001111111 11112222112212222367788885
Q ss_pred HHH----HHHcCCCcEEEEEeCC---HHHHHHHHHHHHHhCCCceEEEEcch
Q 009628 277 TAI----ASLLRDEGEVVAVDRS---HNKVMDIQKLAAEMGLKCITTYKLDA 321 (530)
Q Consensus 277 ~~i----A~lm~~~G~VvA~D~s---~~kv~~i~~~a~~~gl~~i~~~~~Da 321 (530)
+.. +..+...-.|+-+|.- +.-.+-+++.++++|++. .++..+.
T Consensus 194 S~vlL~L~~~~~~~i~vvfvDTG~efpET~e~ve~v~~~ygl~i-~v~~~~~ 244 (417)
T PRK08557 194 SSVSTLLAKEVIPDLEVIFIDTGLEYPETINYVKDFAKKYDLNL-DTLDGDN 244 (417)
T ss_pred HHHHHHHHHHhCCCCEEEEEECCCCCHHHHHHHHHHHHHhCCCE-EEEechH
Confidence 533 2222334578888843 555666888888899864 4444543
No 400
>PRK09072 short chain dehydrogenase; Provisional
Probab=72.78 E-value=80 Score=31.04 Aligned_cols=58 Identities=22% Similarity=0.222 Sum_probs=38.1
Q ss_pred CCeEEeeccCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchh
Q 009628 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (530)
Q Consensus 262 Ge~VLDmCAAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (530)
+.+||=. -|.|+.+.+++..+..+| +|++++++..++..+.+.. +.+ ..+.++..|..
T Consensus 5 ~~~vlIt-G~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~-~~~~~~~~D~~ 63 (263)
T PRK09072 5 DKRVLLT-GASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARL-PYP-GRHRWVVADLT 63 (263)
T ss_pred CCEEEEE-CCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-hcC-CceEEEEccCC
Confidence 4455544 455888888887764444 8999999998877665443 222 24667777754
No 401
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=72.77 E-value=91 Score=30.05 Aligned_cols=59 Identities=15% Similarity=0.186 Sum_probs=41.6
Q ss_pred CCeEEeeccCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchh
Q 009628 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (530)
Q Consensus 262 Ge~VLDmCAAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (530)
+.+||=.+| .|+.+.+++..+..+| +|+.++++..+...+.+..++.+ ..+..+..|..
T Consensus 3 ~~~ilItGa-s~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~d~~ 62 (250)
T TIGR03206 3 DKTAIVTGG-GGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKG-GNAQAFACDIT 62 (250)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcC-CcEEEEEcCCC
Confidence 556776665 5788888887765555 89999999988777766555543 23667777754
No 402
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=72.50 E-value=30 Score=39.76 Aligned_cols=46 Identities=9% Similarity=-0.002 Sum_probs=32.4
Q ss_pred CCCeEEeeccCCChHHHHHHHHcC------C-----CcEEEEEeCCHHHHHHHHHHH
Q 009628 261 KGERILDMCAAPGGKTTAIASLLR------D-----EGEVVAVDRSHNKVMDIQKLA 306 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~------~-----~G~VvA~D~s~~kv~~i~~~a 306 (530)
+--+|||+|=|.|--+....++.. + .-+++++|..+-..+.+.+..
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~ 113 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAH 113 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHH
Confidence 346899999999998887776651 1 238999998765555554443
No 403
>PRK10083 putative oxidoreductase; Provisional
Probab=72.33 E-value=39 Score=34.49 Aligned_cols=51 Identities=25% Similarity=0.350 Sum_probs=34.4
Q ss_pred hcCCCCCCeEEeeccCCChHHHHHHHHcC---CCcEEEEEeCCHHHHHHHHHHHHHhCCC
Q 009628 256 ALDPQKGERILDMCAAPGGKTTAIASLLR---DEGEVVAVDRSHNKVMDIQKLAAEMGLK 312 (530)
Q Consensus 256 ~LdpqpGe~VLDmCAAPGgKT~~iA~lm~---~~G~VvA~D~s~~kv~~i~~~a~~~gl~ 312 (530)
...+++|++||=.++ |+-...++++.+ +...|+++|.++.|.. .++++|.+
T Consensus 155 ~~~~~~g~~vlI~g~--g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~----~~~~~Ga~ 208 (339)
T PRK10083 155 RTGPTEQDVALIYGA--GPVGLTIVQVLKGVYNVKAVIVADRIDERLA----LAKESGAD 208 (339)
T ss_pred hcCCCCCCEEEEECC--CHHHHHHHHHHHHhCCCCEEEEEcCCHHHHH----HHHHhCCc
Confidence 456889999988763 666555544433 2346999999998864 44566764
No 404
>PRK06196 oxidoreductase; Provisional
Probab=72.07 E-value=64 Score=33.00 Aligned_cols=56 Identities=14% Similarity=0.121 Sum_probs=38.3
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchh
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (530)
.|.+||=.+ |.||...++|..+...| +|++++++..+...+.+... .+.++.+|..
T Consensus 25 ~~k~vlITG-asggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~-----~v~~~~~Dl~ 81 (315)
T PRK06196 25 SGKTAIVTG-GYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGID-----GVEVVMLDLA 81 (315)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh-----hCeEEEccCC
Confidence 456777555 56888999888775444 89999999887765543322 2566777754
No 405
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=72.05 E-value=36 Score=34.96 Aligned_cols=51 Identities=16% Similarity=0.164 Sum_probs=33.2
Q ss_pred hcCCCCCCeEEeeccCCChHHHHHHHHcCCCc--EEEEEeCCHHHHHHHHHHHHHhCCC
Q 009628 256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEG--EVVAVDRSHNKVMDIQKLAAEMGLK 312 (530)
Q Consensus 256 ~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G--~VvA~D~s~~kv~~i~~~a~~~gl~ 312 (530)
....++|++||=. |.|+-...++++.+..| .|+++|.+..|... ++++|++
T Consensus 161 ~~~~~~g~~vlI~--g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~----~~~~g~~ 213 (345)
T cd08286 161 NGKVKPGDTVAIV--GAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEV----AKKLGAT 213 (345)
T ss_pred hcCCCCCCEEEEE--CCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHH----HHHhCCC
Confidence 3456789998874 33666655555544444 78999999988553 3456764
No 406
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=71.88 E-value=37 Score=35.21 Aligned_cols=48 Identities=19% Similarity=0.254 Sum_probs=32.3
Q ss_pred CCCCeEEeeccCCChHHHHHHHHcCCCc--EEEEEeCCHHHHHHHHHHHHHhCCCc
Q 009628 260 QKGERILDMCAAPGGKTTAIASLLRDEG--EVVAVDRSHNKVMDIQKLAAEMGLKC 313 (530)
Q Consensus 260 qpGe~VLDmCAAPGgKT~~iA~lm~~~G--~VvA~D~s~~kv~~i~~~a~~~gl~~ 313 (530)
++|++||=.+ .|+-...++++.+..| .|++++.+..+... ++++|++.
T Consensus 176 ~~g~~vlI~g--~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~----~~~~g~~~ 225 (361)
T cd08231 176 GAGDTVVVQG--AGPLGLYAVAAAKLAGARRVIVIDGSPERLEL----AREFGADA 225 (361)
T ss_pred CCCCEEEEEC--CCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHH----HHHcCCCe
Confidence 4899988874 4777665555543333 79999999888643 34567653
No 407
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=71.69 E-value=11 Score=40.67 Aligned_cols=61 Identities=23% Similarity=0.277 Sum_probs=44.0
Q ss_pred cceEEEe-ccchHHHHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHH
Q 009628 240 EGEIFLQ-NLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQ 303 (530)
Q Consensus 240 ~G~i~lQ-d~~S~v~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~ 303 (530)
.+.+|-| ..-+.+=-.+|+++|+++||=+++| |.-...+ ++.+-.+|+|||.|+..+..++
T Consensus 13 ~~lvY~~~WEDp~vD~~aL~i~~~d~vl~ItSa-G~N~L~y--L~~~P~~I~aVDlNp~Q~aLle 74 (380)
T PF11899_consen 13 RGLVYAQCWEDPRVDMEALNIGPDDRVLTITSA-GCNALDY--LLAGPKRIHAVDLNPAQNALLE 74 (380)
T ss_pred cceeeccccCCcHHHHHHhCCCCCCeEEEEccC-CchHHHH--HhcCCceEEEEeCCHHHHHHHH
Confidence 3444444 2445566778999999999999887 4444444 4456689999999998877654
No 408
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=71.65 E-value=40 Score=34.58 Aligned_cols=52 Identities=21% Similarity=0.286 Sum_probs=34.0
Q ss_pred HhcCCCCCCeEEeeccCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCC
Q 009628 255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLK 312 (530)
Q Consensus 255 ~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~ 312 (530)
..+.+++|++||=.+ +|+-...++++.+..| +|++++.+..+.. .++++|.+
T Consensus 157 ~~~~~~~~~~vlV~g--~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~----~~~~~g~~ 209 (333)
T cd08296 157 RNSGAKPGDLVAVQG--IGGLGHLAVQYAAKMGFRTVAISRGSDKAD----LARKLGAH 209 (333)
T ss_pred HhcCCCCCCEEEEEC--CcHHHHHHHHHHHHCCCeEEEEeCChHHHH----HHHHcCCc
Confidence 335678899998876 3555555544443333 7999999988754 34556753
No 409
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=71.30 E-value=33 Score=36.48 Aligned_cols=52 Identities=13% Similarity=0.100 Sum_probs=37.9
Q ss_pred CCCCCCeEEeeccC-CChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCce
Q 009628 258 DPQKGERILDMCAA-PGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCI 314 (530)
Q Consensus 258 dpqpGe~VLDmCAA-PGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i 314 (530)
+..||.+|-=.++| -|..+..+|..|+ -+|+++|.+.+|-+ +.++.+|.+..
T Consensus 178 g~~pG~~vgI~GlGGLGh~aVq~AKAMG--~rV~vis~~~~kke---ea~~~LGAd~f 230 (360)
T KOG0023|consen 178 GLGPGKWVGIVGLGGLGHMAVQYAKAMG--MRVTVISTSSKKKE---EAIKSLGADVF 230 (360)
T ss_pred CCCCCcEEEEecCcccchHHHHHHHHhC--cEEEEEeCCchhHH---HHHHhcCccee
Confidence 45689886555543 6888999999995 58999999985543 34566787753
No 410
>PRK05855 short chain dehydrogenase; Validated
Probab=71.24 E-value=40 Score=37.02 Aligned_cols=60 Identities=25% Similarity=0.315 Sum_probs=43.7
Q ss_pred CCeEEeeccCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 262 Ge~VLDmCAAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
+.++|=. -|.||...++|..+...| +|+.++++..+...+.+..++.|. .+.++..|...
T Consensus 315 ~~~~lv~-G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~ 375 (582)
T PRK05855 315 GKLVVVT-GAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGA-VAHAYRVDVSD 375 (582)
T ss_pred CCEEEEE-CCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEcCCCC
Confidence 4566644 457888888888775444 899999999988877776666664 46777788654
No 411
>PRK05872 short chain dehydrogenase; Provisional
Probab=71.07 E-value=75 Score=32.24 Aligned_cols=58 Identities=21% Similarity=0.275 Sum_probs=37.9
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEEcchh
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDAL 322 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~-~i~~~~~Da~ 322 (530)
.|.+||=.+ |.||...++|..+...| +|+.++++..++..+.+ +++-. .+..+..|..
T Consensus 8 ~gk~vlItG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~---~l~~~~~~~~~~~Dv~ 67 (296)
T PRK05872 8 AGKVVVVTG-AARGIGAELARRLHARGAKLALVDLEEAELAALAA---ELGGDDRVLTVVADVT 67 (296)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---HhcCCCcEEEEEecCC
Confidence 466777555 55788888888775554 89999999987765543 33321 2444556653
No 412
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=70.95 E-value=15 Score=35.95 Aligned_cols=48 Identities=29% Similarity=0.412 Sum_probs=35.0
Q ss_pred CChHHHHHHHHcCC-CcEEEEEeCCHHHH-HHHHHHHHHhCCCceEEEEcchh
Q 009628 272 PGGKTTAIASLLRD-EGEVVAVDRSHNKV-MDIQKLAAEMGLKCITTYKLDAL 322 (530)
Q Consensus 272 PGgKT~~iA~lm~~-~G~VvA~D~s~~kv-~~i~~~a~~~gl~~i~~~~~Da~ 322 (530)
.+|...++|..+.. ..+|+.+|++..++ ..+.+.+++.+.. ++..|..
T Consensus 5 s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~---~~~~D~~ 54 (241)
T PF13561_consen 5 SSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYGAE---VIQCDLS 54 (241)
T ss_dssp TSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTSE---EEESCTT
T ss_pred CCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCCc---eEeecCc
Confidence 57888888887754 45999999999986 4455666677733 4777764
No 413
>PRK06194 hypothetical protein; Provisional
Probab=70.91 E-value=63 Score=32.16 Aligned_cols=60 Identities=17% Similarity=0.159 Sum_probs=41.1
Q ss_pred CCeEEeeccCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 262 Ge~VLDmCAAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
+.+|| +.-|.||...+++..+..+| +|+.+|++..++..+.+.....+. .+.++.+|...
T Consensus 6 ~k~vl-VtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~d 66 (287)
T PRK06194 6 GKVAV-ITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGA-EVLGVRTDVSD 66 (287)
T ss_pred CCEEE-EeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCC-eEEEEECCCCC
Confidence 55677 55566889999988775445 899999998877665544443332 36667777643
No 414
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=70.61 E-value=37 Score=34.76 Aligned_cols=46 Identities=20% Similarity=0.200 Sum_probs=29.2
Q ss_pred HhcCCCCCCeEEeeccCCChHHHHHHHHcCCCc--EEEEEeCCHHHHHHH
Q 009628 255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEG--EVVAVDRSHNKVMDI 302 (530)
Q Consensus 255 ~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G--~VvA~D~s~~kv~~i 302 (530)
....+++|++||-.+ .|+-...++++.+..| .|++++.+..+...+
T Consensus 153 ~~~~~~~~~~vlI~g--~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l 200 (343)
T cd08236 153 RLAGITLGDTVVVIG--AGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVA 200 (343)
T ss_pred HhcCCCCCCEEEEEC--CCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHH
Confidence 355678999999984 3554444433333333 499999988775543
No 415
>PRK09291 short chain dehydrogenase; Provisional
Probab=70.59 E-value=81 Score=30.63 Aligned_cols=58 Identities=29% Similarity=0.275 Sum_probs=41.5
Q ss_pred CeEEeeccCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchh
Q 009628 263 ERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (530)
Q Consensus 263 e~VLDmCAAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (530)
.+||=.+ |.|+...+++..+...| .|++++++..+...+....+..+.. +.++..|..
T Consensus 3 ~~vlVtG-asg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~D~~ 61 (257)
T PRK09291 3 KTILITG-AGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLA-LRVEKLDLT 61 (257)
T ss_pred CEEEEeC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCc-ceEEEeeCC
Confidence 3566444 46888988887775444 9999999998887777766666543 666777754
No 416
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=70.45 E-value=1.1e+02 Score=29.63 Aligned_cols=58 Identities=26% Similarity=0.209 Sum_probs=38.6
Q ss_pred eEEeeccCCChHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 264 RILDMCAAPGGKTTAIASLLRDE-GEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 264 ~VLDmCAAPGgKT~~iA~lm~~~-G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
+||=.+ |.|+...+++..+..+ .+|++++++..+...+.+..+..+ ..+.++..|...
T Consensus 3 ~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~ 61 (255)
T TIGR01963 3 TALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAG-GSVIYLVADVTK 61 (255)
T ss_pred EEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CceEEEECCCCC
Confidence 344344 5688888888765433 489999999888776665554443 246777777643
No 417
>PRK06198 short chain dehydrogenase; Provisional
Probab=70.40 E-value=67 Score=31.31 Aligned_cols=60 Identities=20% Similarity=0.171 Sum_probs=39.4
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCCCc-E-EEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchh
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRDEG-E-VVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~~G-~-VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (530)
.+.+||=.+ |.|+.+.+++..+...| + |++++++..+...+...++..+. .+..+..|..
T Consensus 5 ~~k~vlItG-a~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~ 66 (260)
T PRK06198 5 DGKVALVTG-GTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGA-KAVFVQADLS 66 (260)
T ss_pred CCcEEEEeC-CCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCC-eEEEEEccCC
Confidence 356677444 57888998887774444 6 99999998777655544444332 3556667754
No 418
>PRK05876 short chain dehydrogenase; Provisional
Probab=70.24 E-value=82 Score=31.62 Aligned_cols=60 Identities=15% Similarity=0.100 Sum_probs=41.0
Q ss_pred CCeEEeeccCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 262 Ge~VLDmCAAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
|.+||=.+| .||.+.++|..+..+| .|+.+|++..++..+.+..+..|. .+.++..|..+
T Consensus 6 ~k~vlVTGa-s~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~-~~~~~~~Dv~d 66 (275)
T PRK05876 6 GRGAVITGG-ASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGF-DVHGVMCDVRH 66 (275)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEeCCCCC
Confidence 566775555 5888888888775554 899999999887766554444443 35667777643
No 419
>PRK08267 short chain dehydrogenase; Provisional
Probab=70.09 E-value=55 Score=32.08 Aligned_cols=55 Identities=27% Similarity=0.203 Sum_probs=37.5
Q ss_pred EEeeccCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 265 ILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 265 VLDmCAAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
||=. -|.|+.+.+++..+..+| .|++++++..++..+.+.. +-..+.++..|...
T Consensus 4 vlIt-Gasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~D~~~ 59 (260)
T PRK08267 4 IFIT-GAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAEL---GAGNAWTGALDVTD 59 (260)
T ss_pred EEEe-CCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh---cCCceEEEEecCCC
Confidence 4444 456888888888775555 8999999998876654432 22347778888643
No 420
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=69.42 E-value=12 Score=39.91 Aligned_cols=57 Identities=18% Similarity=0.263 Sum_probs=43.8
Q ss_pred HHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 009628 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC 313 (530)
Q Consensus 253 ~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~ 313 (530)
+.+.+++++|+.|-=.++|-=|.+.-....+...++|+|+|+++.|+ ++|+++|.+.
T Consensus 177 v~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl----~~A~~fGAT~ 233 (366)
T COG1062 177 VVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKL----ELAKKFGATH 233 (366)
T ss_pred hhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHH----HHHHhcCCce
Confidence 45678899999988887765455544455566789999999999997 5778889864
No 421
>PRK06128 oxidoreductase; Provisional
Probab=69.22 E-value=1.2e+02 Score=30.66 Aligned_cols=61 Identities=18% Similarity=0.165 Sum_probs=36.8
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCCCc-EEEEEeCCH--HHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSH--NKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~~G-~VvA~D~s~--~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
.|.+||=.+ |.||...++|..+...| +|+..+++. .....+.+.++..|. .+.++..|...
T Consensus 54 ~~k~vlITG-as~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~ 117 (300)
T PRK06128 54 QGRKALITG-ADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGR-KAVALPGDLKD 117 (300)
T ss_pred CCCEEEEec-CCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCC-eEEEEecCCCC
Confidence 466777666 46888888887775445 677666543 234444444444443 25566777543
No 422
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=69.15 E-value=12 Score=39.19 Aligned_cols=42 Identities=17% Similarity=0.145 Sum_probs=32.6
Q ss_pred CeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHH
Q 009628 263 ERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLA 306 (530)
Q Consensus 263 e~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a 306 (530)
.+++|+|||-||....+... +=--+.|+|+++..+...+.|.
T Consensus 4 ~~~idLFsG~GG~~lGf~~a--gf~~~~a~Eid~~a~~ty~~n~ 45 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEA--GFEIVFANEIDPPAVATYKANF 45 (328)
T ss_pred ceEEeeccCCchHHHHHHhc--CCeEEEEEecCHHHHHHHHHhC
Confidence 47999999999999766552 1236889999999988776654
No 423
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=68.96 E-value=33 Score=35.09 Aligned_cols=44 Identities=23% Similarity=0.209 Sum_probs=28.3
Q ss_pred hcCCCCCCeEEeeccCCChHHH---HHHHHcCCCcEEEEEeCCHHHHHHH
Q 009628 256 ALDPQKGERILDMCAAPGGKTT---AIASLLRDEGEVVAVDRSHNKVMDI 302 (530)
Q Consensus 256 ~LdpqpGe~VLDmCAAPGgKT~---~iA~lm~~~G~VvA~D~s~~kv~~i 302 (530)
....++|++||-.++ |+-.. ++|..++ ...|++++.+..|...+
T Consensus 162 ~~~~~~~~~VlI~g~--g~vg~~~iqlak~~g-~~~v~~~~~~~~~~~~~ 208 (347)
T cd05278 162 LAGIKPGSTVAVIGA--GPVGLCAVAGARLLG-AARIIAVDSNPERLDLA 208 (347)
T ss_pred hcCCCCCCEEEEECC--CHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHH
Confidence 345788999999543 55444 4445442 13789999988776543
No 424
>PRK09135 pteridine reductase; Provisional
Probab=68.79 E-value=1.1e+02 Score=29.32 Aligned_cols=62 Identities=13% Similarity=0.008 Sum_probs=40.4
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCCC-cEEEEEeCC-HHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRDE-GEVVAVDRS-HNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~~-G~VvA~D~s-~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
.+.+||=.+| .|+-+.+++..+..+ -+|++++++ ..+...+.+.....+-..+.++..|...
T Consensus 5 ~~~~vlItGa-~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~ 68 (249)
T PRK09135 5 SAKVALITGG-ARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLD 68 (249)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCC
Confidence 4567888775 588899988777544 489999986 4445544444443333446777777643
No 425
>PRK06182 short chain dehydrogenase; Validated
Probab=68.73 E-value=67 Score=31.83 Aligned_cols=53 Identities=25% Similarity=0.325 Sum_probs=36.5
Q ss_pred CCeEEeeccCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchh
Q 009628 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (530)
Q Consensus 262 Ge~VLDmCAAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (530)
+.+|| +.-|.||...++|..+..+| .|++++++..++..+.. . .+.++..|..
T Consensus 3 ~k~vl-ItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~----~---~~~~~~~Dv~ 56 (273)
T PRK06182 3 KKVAL-VTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLAS----L---GVHPLSLDVT 56 (273)
T ss_pred CCEEE-EECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh----C---CCeEEEeeCC
Confidence 44566 45567889999998775555 89999999887654421 2 3566777754
No 426
>PRK07985 oxidoreductase; Provisional
Probab=68.72 E-value=1.1e+02 Score=31.17 Aligned_cols=61 Identities=21% Similarity=0.177 Sum_probs=38.6
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCCCc-EEEEEeCC--HHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRS--HNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~~G-~VvA~D~s--~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
.|.++|=.+| .||...++|..+...| +|+.++++ ..+...+.+..++.|. .+.++..|...
T Consensus 48 ~~k~vlITGa-s~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~ 111 (294)
T PRK07985 48 KDRKALVTGG-DSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGR-KAVLLPGDLSD 111 (294)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCC-eEEEEEccCCC
Confidence 4667887775 5788888887775444 78887764 3445555555555443 35567777543
No 427
>PRK07454 short chain dehydrogenase; Provisional
Probab=68.52 E-value=87 Score=30.19 Aligned_cols=60 Identities=22% Similarity=0.236 Sum_probs=42.6
Q ss_pred CCeEEeeccCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 262 Ge~VLDmCAAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
+.+||=.+ |.|+.+.+++..+..+| .|+++++++.+...+.+..++.+ ..+.++.+|...
T Consensus 6 ~k~vlItG-~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~ 66 (241)
T PRK07454 6 MPRALITG-ASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTG-VKAAAYSIDLSN 66 (241)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCC-CcEEEEEccCCC
Confidence 34566665 47888898888775444 89999999988877766665544 346677777643
No 428
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=68.35 E-value=93 Score=30.74 Aligned_cols=61 Identities=20% Similarity=0.250 Sum_probs=38.4
Q ss_pred CCCeEEeeccC-CChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 261 KGERILDMCAA-PGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 261 pGe~VLDmCAA-PGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
.|.++|=.+|+ .+|...++|..+..+| .|+.++++.+ ...+.+.+++++- .+.++..|..+
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~-~~~~~~~~~~~~~-~~~~~~~Dv~~ 68 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRA-LRLTERIAKRLPE-PAPVLELDVTN 68 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccc-hhHHHHHHHhcCC-CCcEEeCCCCC
Confidence 46788888885 6899999988765444 8888887641 1222334444432 34566667543
No 429
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=68.23 E-value=43 Score=35.07 Aligned_cols=50 Identities=26% Similarity=0.328 Sum_probs=32.5
Q ss_pred hcCCCCCCeEEeeccCCChHHH---HHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC
Q 009628 256 ALDPQKGERILDMCAAPGGKTT---AIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK 312 (530)
Q Consensus 256 ~LdpqpGe~VLDmCAAPGgKT~---~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~ 312 (530)
..++++|++||=.++ |+-.. ++|+.++ ...|+++|.+..|... ++++|.+
T Consensus 181 ~~~~~~g~~vlI~g~--g~vG~~~~~la~~~G-~~~v~~~~~~~~k~~~----~~~~g~~ 233 (365)
T cd08278 181 VLKPRPGSSIAVFGA--GAVGLAAVMAAKIAG-CTTIIAVDIVDSRLEL----AKELGAT 233 (365)
T ss_pred hcCCCCCCEEEEECC--CHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHH----HHHcCCc
Confidence 346788999998843 55444 4444442 2369999999988653 3456653
No 430
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=67.99 E-value=1.3e+02 Score=34.80 Aligned_cols=85 Identities=19% Similarity=0.180 Sum_probs=51.7
Q ss_pred cccceEEEeccchHHHHHh-cCCC----CCCeEEeeccCCChHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHH-HhC
Q 009628 238 VLEGEIFLQNLPSIVTAHA-LDPQ----KGERILDMCAAPGGKTTAIASLLRDE-GEVVAVDRSHNKVMDIQKLAA-EMG 310 (530)
Q Consensus 238 ~~~G~i~lQd~~S~v~~~~-Ldpq----pGe~VLDmCAAPGgKT~~iA~lm~~~-G~VvA~D~s~~kv~~i~~~a~-~~g 310 (530)
+.+.+.|.....+.--+.+ .-|+ .|.+|| +.-|.||...++|..+... .+|+++|++..++..+.+... ..+
T Consensus 385 ~~~~~~f~~eyw~~e~~kl~~~~~~~~l~gkvvL-VTGasggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~~~~ 463 (676)
T TIGR02632 385 LPEQEAFDIEYWPLEEAKLRRMPKEKTLARRVAF-VTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQFG 463 (676)
T ss_pred CchhhccchhhhhhhHHhhccCCCCcCCCCCEEE-EeCCCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhhcC
Confidence 3455666666665443333 2122 355666 4555688899988776444 489999999988766644333 233
Q ss_pred CCceEEEEcchhH
Q 009628 311 LKCITTYKLDALK 323 (530)
Q Consensus 311 l~~i~~~~~Da~k 323 (530)
-..+..+..|...
T Consensus 464 ~~~~~~v~~Dvtd 476 (676)
T TIGR02632 464 AGRAVALKMDVTD 476 (676)
T ss_pred CCcEEEEECCCCC
Confidence 3346667777643
No 431
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=67.88 E-value=60 Score=33.16 Aligned_cols=49 Identities=20% Similarity=0.220 Sum_probs=34.3
Q ss_pred cCCCCCCeEEeeccCCChHHHHHHHHcCCCc--EEEEEeCCHHHHHHHHHHHHHhCC
Q 009628 257 LDPQKGERILDMCAAPGGKTTAIASLLRDEG--EVVAVDRSHNKVMDIQKLAAEMGL 311 (530)
Q Consensus 257 LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G--~VvA~D~s~~kv~~i~~~a~~~gl 311 (530)
...++|++||=. + .|+....++++.+..| .|++++.+..|... ++++|.
T Consensus 163 ~~~~~~~~vlI~-g-~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~----~~~~g~ 213 (344)
T cd08284 163 AQVRPGDTVAVI-G-CGPVGLCAVLSAQVLGAARVFAVDPVPERLER----AAALGA 213 (344)
T ss_pred cCCccCCEEEEE-C-CcHHHHHHHHHHHHcCCceEEEEcCCHHHHHH----HHHhCC
Confidence 456789998876 3 5777776666665556 69999988877543 445664
No 432
>PRK06940 short chain dehydrogenase; Provisional
Probab=67.67 E-value=1.4e+02 Score=29.91 Aligned_cols=57 Identities=23% Similarity=0.278 Sum_probs=39.1
Q ss_pred eEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 264 RILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 264 ~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
.+|=.+ | ||...++|..+.....|+.+|++..++..+.+..+..|. .+.++..|...
T Consensus 4 ~~lItG-a-~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d 60 (275)
T PRK06940 4 VVVVIG-A-GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAGF-DVSTQEVDVSS 60 (275)
T ss_pred EEEEEC-C-ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEeecCC
Confidence 344344 3 789999998887556899999998887766555554443 35667777643
No 433
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.06 E-value=12 Score=36.21 Aligned_cols=49 Identities=18% Similarity=0.297 Sum_probs=30.9
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM 309 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~ 309 (530)
.|.+||.+++|-=+.+..+.+.-.+..+|.-.|-+..-++.+++..-.+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n 77 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSN 77 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcc
Confidence 4788999986543322222111234568898999998888877665443
No 434
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=67.01 E-value=64 Score=33.26 Aligned_cols=51 Identities=27% Similarity=0.303 Sum_probs=33.0
Q ss_pred HhcCCCCCCeEEeeccCCChHHH---HHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC
Q 009628 255 HALDPQKGERILDMCAAPGGKTT---AIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK 312 (530)
Q Consensus 255 ~~LdpqpGe~VLDmCAAPGgKT~---~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~ 312 (530)
.....++|++||=.++ |+-.. ++|..++ -..|+++|.+..|.. .++++|.+
T Consensus 160 ~~~~~~~g~~vlI~g~--g~iG~~~~~lak~~G-~~~v~~~~~~~~~~~----~~~~~g~~ 213 (351)
T cd08285 160 ELANIKLGDTVAVFGI--GPVGLMAVAGARLRG-AGRIIAVGSRPNRVE----LAKEYGAT 213 (351)
T ss_pred HccCCCCCCEEEEECC--CHHHHHHHHHHHHcC-CCeEEEEeCCHHHHH----HHHHcCCc
Confidence 3445788999998843 54444 4454442 236999999998864 44567754
No 435
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=66.83 E-value=94 Score=30.09 Aligned_cols=52 Identities=25% Similarity=0.311 Sum_probs=36.5
Q ss_pred cCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchh
Q 009628 270 AAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (530)
Q Consensus 270 AAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (530)
-|.|+.+.+++..+...| +|+.++++..++..+.+.....+. .+.++..|..
T Consensus 7 G~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~ 59 (254)
T TIGR02415 7 GGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGG-KAVAYKLDVS 59 (254)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEcCCC
Confidence 356888888887764444 899999998877766655555443 4677777754
No 436
>PRK05993 short chain dehydrogenase; Provisional
Probab=66.55 E-value=79 Score=31.56 Aligned_cols=53 Identities=23% Similarity=0.293 Sum_probs=36.6
Q ss_pred CCeEEeeccCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchh
Q 009628 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (530)
Q Consensus 262 Ge~VLDmCAAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (530)
+.+||=.+ |.||.+.++|..+..+| .|++++++..++..+.. . .+..+..|..
T Consensus 4 ~k~vlItG-asggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~----~---~~~~~~~Dl~ 57 (277)
T PRK05993 4 KRSILITG-CSSGIGAYCARALQSDGWRVFATCRKEEDVAALEA----E---GLEAFQLDYA 57 (277)
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----C---CceEEEccCC
Confidence 45666444 57899999988775444 89999999888765532 2 2556667754
No 437
>PRK07775 short chain dehydrogenase; Provisional
Probab=66.50 E-value=96 Score=30.90 Aligned_cols=58 Identities=22% Similarity=0.163 Sum_probs=39.3
Q ss_pred eEEeeccCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 264 RILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 264 ~VLDmCAAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
.||=. -|.|+...+++..+..+| +|++++++..+...+....+..+- .+.+++.|...
T Consensus 12 ~vlVt-Ga~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~ 70 (274)
T PRK07775 12 PALVA-GASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADGG-EAVAFPLDVTD 70 (274)
T ss_pred EEEEE-CCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEECCCCC
Confidence 45544 457899999987665445 888999988777666555554442 46777777653
No 438
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=66.05 E-value=45 Score=34.03 Aligned_cols=47 Identities=15% Similarity=0.182 Sum_probs=28.6
Q ss_pred CCCeEEeeccCCChHH---HHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 009628 261 KGERILDMCAAPGGKT---TAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC 313 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT---~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~ 313 (530)
+|+.+|=.-.|+|+-. .++|..++ .+|++++.+..|...+ +++|.+.
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~~~G--~~vi~~~~~~~~~~~~----~~~g~~~ 191 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCKADG--IKVINIVRRKEQVDLL----KKIGAEY 191 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHH----HHcCCcE
Confidence 4555554434555554 45555543 3799999999886554 4467653
No 439
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=65.97 E-value=56 Score=31.94 Aligned_cols=57 Identities=26% Similarity=0.324 Sum_probs=38.8
Q ss_pred CCeEEeeccCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 262 Ge~VLDmCAAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
+.+|| +.-|.|+.+.++|..+..+| +|+.+|++..+...+. ++.+ ..+.+++.|...
T Consensus 6 ~~~vl-ItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~---~~~~-~~~~~~~~D~~~ 63 (257)
T PRK07067 6 GKVAL-LTGAASGIGEAVAERYLAEGARVVIADIKPARARLAA---LEIG-PAAIAVSLDVTR 63 (257)
T ss_pred CCEEE-EeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH---HHhC-CceEEEEccCCC
Confidence 44566 44467888999988775555 8999999988766543 3333 346777777643
No 440
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=65.94 E-value=52 Score=33.80 Aligned_cols=49 Identities=20% Similarity=0.309 Sum_probs=31.1
Q ss_pred CCCCCCeEEeeccCCChHHHHHHHHcCCCc-E-EEEEeCCHHHHHHHHHHHHHhCCC
Q 009628 258 DPQKGERILDMCAAPGGKTTAIASLLRDEG-E-VVAVDRSHNKVMDIQKLAAEMGLK 312 (530)
Q Consensus 258 dpqpGe~VLDmCAAPGgKT~~iA~lm~~~G-~-VvA~D~s~~kv~~i~~~a~~~gl~ 312 (530)
..++|++||- .+ .|+-...++++.+..| + |++++.+..+... ++++|++
T Consensus 158 ~~~~g~~vlI-~~-~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~----~~~~g~~ 208 (340)
T TIGR00692 158 GPISGKSVLV-TG-AGPIGLMAIAVAKASGAYPVIVSDPNEYRLEL----AKKMGAT 208 (340)
T ss_pred cCCCCCEEEE-EC-CCHHHHHHHHHHHHcCCcEEEEECCCHHHHHH----HHHhCCc
Confidence 3578999988 43 3666555555544444 4 8888888877643 3455653
No 441
>PRK06701 short chain dehydrogenase; Provisional
Probab=65.83 E-value=1.4e+02 Score=30.32 Aligned_cols=61 Identities=16% Similarity=0.151 Sum_probs=37.9
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCC-CcEEEEEeCCHH-HHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRD-EGEVVAVDRSHN-KVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~-~G~VvA~D~s~~-kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
.|.+||=.+| .|+.+.++|..+.. ..+|+.++++.. ....+....+..|. .+.++..|...
T Consensus 45 ~~k~iLItGa-sggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~ 107 (290)
T PRK06701 45 KGKVALITGG-DSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGV-KCLLIPGDVSD 107 (290)
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCC-eEEEEEccCCC
Confidence 4677877765 67778888876643 348889988753 34444444443342 36677777643
No 442
>PRK05884 short chain dehydrogenase; Provisional
Probab=65.54 E-value=99 Score=29.92 Aligned_cols=48 Identities=17% Similarity=0.215 Sum_probs=31.6
Q ss_pred ccCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchh
Q 009628 269 CAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (530)
Q Consensus 269 CAAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (530)
.-|.||-..++|..+..+| .|+.++++..++..+. ++.+ +.++..|..
T Consensus 6 tGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~---~~~~---~~~~~~D~~ 54 (223)
T PRK05884 6 TGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAA---KELD---VDAIVCDNT 54 (223)
T ss_pred EeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH---Hhcc---CcEEecCCC
Confidence 3456778888888775444 8999999988765543 3332 345666653
No 443
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=65.53 E-value=27 Score=36.69 Aligned_cols=62 Identities=10% Similarity=0.158 Sum_probs=42.5
Q ss_pred CCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhC--C--CceEEEEcchhHH
Q 009628 262 GERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG--L--KCITTYKLDALKA 324 (530)
Q Consensus 262 Ge~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~g--l--~~i~~~~~Da~k~ 324 (530)
-.+||=++-|-||..-..+.. ..-+.|.-+|++.+-++.-++....+- . ..|...-+|....
T Consensus 122 pkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~f 187 (337)
T KOG1562|consen 122 PKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLF 187 (337)
T ss_pred CCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHH
Confidence 358999999999987665554 445789999999888777666666542 2 2255555665554
No 444
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=65.51 E-value=61 Score=31.79 Aligned_cols=60 Identities=17% Similarity=0.258 Sum_probs=40.0
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
.|.+||=.+| .|+.+.++|..+...| .|+.++++ .+...+.+...+.+ ..+.++..|...
T Consensus 14 ~~k~vlItGa-s~gIG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~D~~~ 74 (258)
T PRK06935 14 DGKVAIVTGG-NTGLGQGYAVALAKAGADIIITTHG-TNWDETRRLIEKEG-RKVTFVQVDLTK 74 (258)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHHHhcC-CceEEEEcCCCC
Confidence 4667776666 5677888887775444 88889988 55566655555554 346777777643
No 445
>PRK07774 short chain dehydrogenase; Provisional
Probab=65.39 E-value=1.1e+02 Score=29.63 Aligned_cols=60 Identities=23% Similarity=0.277 Sum_probs=40.0
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchh
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (530)
.|.+|| +.-|.|+-+.+++..+..+| +|+.++++..+...+.+..+..+ ..+..+..|..
T Consensus 5 ~~k~vl-ItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~ 65 (250)
T PRK07774 5 DDKVAI-VTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADG-GTAIAVQVDVS 65 (250)
T ss_pred CCCEEE-EECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEcCCC
Confidence 355666 44467899999988774444 99999999887766655544322 23556666654
No 446
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=65.32 E-value=1.1e+02 Score=33.02 Aligned_cols=59 Identities=29% Similarity=0.338 Sum_probs=36.6
Q ss_pred CCCCCeEEeeccCCChHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchh
Q 009628 259 PQKGERILDMCAAPGGKTTAIASLLRDE-GEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (530)
Q Consensus 259 pqpGe~VLDmCAAPGgKT~~iA~lm~~~-G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (530)
+.+|.++|=.++ .||...++|..+..+ .+|+.+|++... ..+.+.+++++. .++..|..
T Consensus 207 ~~~g~~vlItGa-sggIG~~la~~l~~~Ga~vi~~~~~~~~-~~l~~~~~~~~~---~~~~~Dv~ 266 (450)
T PRK08261 207 PLAGKVALVTGA-ARGIGAAIAEVLARDGAHVVCLDVPAAG-EALAAVANRVGG---TALALDIT 266 (450)
T ss_pred CCCCCEEEEecC-CCHHHHHHHHHHHHCCCEEEEEeCCccH-HHHHHHHHHcCC---eEEEEeCC
Confidence 345777776665 578888888776444 489999985322 334455555543 34555643
No 447
>PRK07024 short chain dehydrogenase; Provisional
Probab=65.22 E-value=86 Score=30.74 Aligned_cols=57 Identities=16% Similarity=0.232 Sum_probs=38.6
Q ss_pred eEEeeccCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 264 RILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 264 ~VLDmCAAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
+||= .-|.||...+++..+..+| .|+.+|+++.++..+.+.....+ .+..+.+|...
T Consensus 4 ~vlI-tGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dl~~ 61 (257)
T PRK07024 4 KVFI-TGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKAA--RVSVYAADVRD 61 (257)
T ss_pred EEEE-EcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCC--eeEEEEcCCCC
Confidence 4443 4457889999988775555 99999999988766544333222 56777777653
No 448
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=64.87 E-value=64 Score=32.71 Aligned_cols=51 Identities=24% Similarity=0.222 Sum_probs=32.1
Q ss_pred HhcCCCCCCeEEeeccCCChHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHhCC
Q 009628 255 HALDPQKGERILDMCAAPGGKTTAIASLLRDE-GEVVAVDRSHNKVMDIQKLAAEMGL 311 (530)
Q Consensus 255 ~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~-G~VvA~D~s~~kv~~i~~~a~~~gl 311 (530)
....+++|++||=. |.|+-...++++.+.. .+|++++.+..+... ++++|.
T Consensus 161 ~~~~~~~~~~vlV~--g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~----~~~~g~ 212 (329)
T cd08298 161 KLAGLKPGQRLGLY--GFGASAHLALQIARYQGAEVFAFTRSGEHQEL----ARELGA 212 (329)
T ss_pred HhhCCCCCCEEEEE--CCcHHHHHHHHHHHHCCCeEEEEcCChHHHHH----HHHhCC
Confidence 34567889998876 3456555544443322 489999998876543 345564
No 449
>PRK05650 short chain dehydrogenase; Provisional
Probab=64.73 E-value=1.3e+02 Score=29.71 Aligned_cols=57 Identities=25% Similarity=0.198 Sum_probs=39.1
Q ss_pred eEEeeccCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchh
Q 009628 264 RILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (530)
Q Consensus 264 ~VLDmCAAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (530)
+|| +..|.|+.+.+++..+...| .|+.++++..+...+.+..+..+- .+..+.+|..
T Consensus 2 ~vl-VtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~ 59 (270)
T PRK05650 2 RVM-ITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGG-DGFYQRCDVR 59 (270)
T ss_pred EEE-EecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEccCC
Confidence 344 34467888888887765445 899999999887776665555443 3566777754
No 450
>PRK07060 short chain dehydrogenase; Provisional
Probab=64.66 E-value=1.2e+02 Score=29.18 Aligned_cols=41 Identities=29% Similarity=0.411 Sum_probs=30.4
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHH
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDI 302 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i 302 (530)
.|.+|| +.-|.|+-+.+++..+..+| +|+.++++..++..+
T Consensus 8 ~~~~~l-ItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~ 49 (245)
T PRK07060 8 SGKSVL-VTGASSGIGRACAVALAQRGARVVAAARNAAALDRL 49 (245)
T ss_pred CCCEEE-EeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 456777 55566888888888775555 899999998876544
No 451
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=64.55 E-value=33 Score=36.08 Aligned_cols=49 Identities=16% Similarity=0.159 Sum_probs=30.1
Q ss_pred CCCCCeEEeeccCCChHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHhCCC
Q 009628 259 PQKGERILDMCAAPGGKTTAIASLLRDE-GEVVAVDRSHNKVMDIQKLAAEMGLK 312 (530)
Q Consensus 259 pqpGe~VLDmCAAPGgKT~~iA~lm~~~-G~VvA~D~s~~kv~~i~~~a~~~gl~ 312 (530)
.++|++||=.+| |+-...++++.+.. .+|++++.+..+.. ..++++|.+
T Consensus 181 ~~~g~~VlV~G~--G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~---~~~~~~Ga~ 230 (360)
T PLN02586 181 TEPGKHLGVAGL--GGLGHVAVKIGKAFGLKVTVISSSSNKED---EAINRLGAD 230 (360)
T ss_pred cCCCCEEEEECC--CHHHHHHHHHHHHCCCEEEEEeCCcchhh---hHHHhCCCc
Confidence 578999998655 55554443333222 36888888876543 344567764
No 452
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=64.55 E-value=6.6 Score=35.18 Aligned_cols=20 Identities=40% Similarity=0.918 Sum_probs=17.9
Q ss_pred HHHHHHHHHhcCCCCCEEEE
Q 009628 461 QRRMFDQAVQLVRPGGIIVY 480 (530)
Q Consensus 461 Qr~ll~~A~~lLkpGG~LVY 480 (530)
-+++|++..++|+|||.|+.
T Consensus 23 l~~~f~~~~~~L~pGG~lil 42 (110)
T PF06859_consen 23 LKRFFRRIYSLLRPGGILIL 42 (110)
T ss_dssp HHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHhhCCCCEEEE
Confidence 35899999999999999995
No 453
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=64.38 E-value=1.1e+02 Score=29.50 Aligned_cols=59 Identities=24% Similarity=0.308 Sum_probs=38.8
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
.|.+||=.+| .|+...++|..+..+| +|+.++++.. ..+.+..++.+ ..+.++..|..+
T Consensus 4 ~~k~vlItGa-s~gIG~~ia~~l~~~G~~vi~~~r~~~--~~~~~~~~~~~-~~~~~~~~D~~~ 63 (248)
T TIGR01832 4 EGKVALVTGA-NTGLGQGIAVGLAEAGADIVGAGRSEP--SETQQQVEALG-RRFLSLTADLSD 63 (248)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEcCchH--HHHHHHHHhcC-CceEEEECCCCC
Confidence 4667776666 4778888888776555 8999998752 33444444444 236777777654
No 454
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=64.33 E-value=80 Score=32.90 Aligned_cols=51 Identities=20% Similarity=0.258 Sum_probs=32.5
Q ss_pred hcCCCCCCeEEeeccCCChHHHHHHHHcCCCc--EEEEEeCCHHHHHHHHHHHHHhCCC
Q 009628 256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEG--EVVAVDRSHNKVMDIQKLAAEMGLK 312 (530)
Q Consensus 256 ~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G--~VvA~D~s~~kv~~i~~~a~~~gl~ 312 (530)
...+++|++||-. ++ |+-...++++.+..| .|++++.+..+...+ +++|++
T Consensus 177 ~~~~~~g~~vLI~-g~-g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~----~~~g~~ 229 (363)
T cd08279 177 TARVRPGDTVAVI-GC-GGVGLNAIQGARIAGASRIIAVDPVPEKLELA----RRFGAT 229 (363)
T ss_pred ccCCCCCCEEEEE-CC-CHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHH----HHhCCe
Confidence 3457889999988 33 655544444443334 499999998886433 456653
No 455
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=64.16 E-value=6.9 Score=41.91 Aligned_cols=53 Identities=25% Similarity=0.260 Sum_probs=32.1
Q ss_pred EEEeccchHHHHH------hcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCH
Q 009628 243 IFLQNLPSIVTAH------ALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296 (530)
Q Consensus 243 i~lQd~~S~v~~~------~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~ 296 (530)
.+.|+.+|+.++. .-|..| .+|||+++|||.-..++-....+--.++-++.|+
T Consensus 90 ~lp~~Yasv~asL~~L~~~~~dfap-qsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp 148 (484)
T COG5459 90 RLPQTYASVRASLDELQKRVPDFAP-QSILDVGAGPGTGLWALNDIWPDLKSAVILEASP 148 (484)
T ss_pred hhhHHHHHHHHHHHHHHHhCCCcCc-chhhccCCCCchhhhhhcccCCCchhhhhhccCH
Confidence 3567777776542 112233 3599999999976655555554434555556554
No 456
>PRK06482 short chain dehydrogenase; Provisional
Probab=64.14 E-value=71 Score=31.64 Aligned_cols=55 Identities=20% Similarity=0.275 Sum_probs=37.6
Q ss_pred eEEeeccCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 264 RILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 264 ~VLDmCAAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
+|| +.-|.|+...+++..+..+| .|++++++..++..+.+. .+ ..+.+++.|...
T Consensus 4 ~vl-VtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~---~~-~~~~~~~~D~~~ 59 (276)
T PRK06482 4 TWF-ITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKAR---YG-DRLWVLQLDVTD 59 (276)
T ss_pred EEE-EecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh---cc-CceEEEEccCCC
Confidence 455 44557999999987765444 899999998877655443 22 246777777643
No 457
>PLN02702 L-idonate 5-dehydrogenase
Probab=64.02 E-value=86 Score=32.64 Aligned_cols=53 Identities=19% Similarity=0.211 Sum_probs=33.3
Q ss_pred HhcCCCCCCeEEeeccCCChHHHHHHHHcCCCc--EEEEEeCCHHHHHHHHHHHHHhCCCc
Q 009628 255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEG--EVVAVDRSHNKVMDIQKLAAEMGLKC 313 (530)
Q Consensus 255 ~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G--~VvA~D~s~~kv~~i~~~a~~~gl~~ 313 (530)
.....++|++||=.+ .|+-...++++.+..| .|+++|.+..|.. +++++|.+-
T Consensus 175 ~~~~~~~g~~vlI~g--~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~----~~~~~g~~~ 229 (364)
T PLN02702 175 RRANIGPETNVLVMG--AGPIGLVTMLAARAFGAPRIVIVDVDDERLS----VAKQLGADE 229 (364)
T ss_pred HhcCCCCCCEEEEEC--CCHHHHHHHHHHHHcCCCEEEEECCCHHHHH----HHHHhCCCE
Confidence 345678899998884 4555443333333233 5899999987764 455567654
No 458
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=63.76 E-value=29 Score=35.30 Aligned_cols=56 Identities=16% Similarity=0.242 Sum_probs=36.4
Q ss_pred eccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhHHHh
Q 009628 268 MCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVR 326 (530)
Q Consensus 268 mCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k~v~ 326 (530)
+-..||+=.+ ++.+|+.+-+.+++|..+.-...++++++. -..+.+++.|..+.+.
T Consensus 62 l~~YPGSP~i-a~~llR~qDrl~l~ELHp~d~~~L~~~~~~--~~~v~v~~~DG~~~l~ 117 (245)
T PF04378_consen 62 LRFYPGSPAI-AARLLREQDRLVLFELHPQDFEALKKNFRR--DRRVRVHHRDGYEGLK 117 (245)
T ss_dssp --EEE-HHHH-HHHHS-TTSEEEEE--SHHHHHHHTTS--T--TS-EEEE-S-HHHHHH
T ss_pred cCcCCCCHHH-HHHhCCccceEEEEecCchHHHHHHHHhcc--CCccEEEeCchhhhhh
Confidence 5678998665 456788899999999999999988877664 3569999999998764
No 459
>PRK06180 short chain dehydrogenase; Provisional
Probab=63.75 E-value=82 Score=31.38 Aligned_cols=56 Identities=23% Similarity=0.153 Sum_probs=36.9
Q ss_pred CCeEEeeccCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchh
Q 009628 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (530)
Q Consensus 262 Ge~VLDmCAAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (530)
+.+||=. -|.|+...+++..+..+| +|++++++..++..+.+. .+ ..+..+..|..
T Consensus 4 ~~~vlVt-GasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~---~~-~~~~~~~~D~~ 60 (277)
T PRK06180 4 MKTWLIT-GVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEAL---HP-DRALARLLDVT 60 (277)
T ss_pred CCEEEEe-cCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhh---cC-CCeeEEEccCC
Confidence 4456644 456888999988775444 899999999877655332 22 34566666654
No 460
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=62.89 E-value=1.6e+02 Score=28.88 Aligned_cols=56 Identities=21% Similarity=0.202 Sum_probs=37.9
Q ss_pred eEEeeccCCChHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchh
Q 009628 264 RILDMCAAPGGKTTAIASLLRDE-GEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (530)
Q Consensus 264 ~VLDmCAAPGgKT~~iA~lm~~~-G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (530)
+||=.+| .||.+.++|..+..+ .+|+.+++++.++..+.+.++..+ .+..+..|..
T Consensus 2 ~vlItGa-s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~Dv~ 58 (259)
T PRK08340 2 NVLVTAS-SRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYG--EVYAVKADLS 58 (259)
T ss_pred eEEEEcC-CcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEcCCC
Confidence 4555554 477888888776444 489999999988877665554433 4666777754
No 461
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=62.87 E-value=14 Score=40.76 Aligned_cols=55 Identities=18% Similarity=0.120 Sum_probs=46.6
Q ss_pred eEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-eEEEEcc
Q 009628 264 RILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLD 320 (530)
Q Consensus 264 ~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~-i~~~~~D 320 (530)
.|||+++|+|-.+.+.+..+.+ .|+|++.=+.++..+++.....|.+. |+++.--
T Consensus 69 ~vLdigtGTGLLSmMAvragaD--~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkr 124 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGAD--SVTACEVFKPMVDLARKIMHKNGMSDKINVINKR 124 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCC--eEEeehhhchHHHHHHHHHhcCCCccceeeeccc
Confidence 5999999999988887777644 59999999999999999999999854 7777543
No 462
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=62.82 E-value=1.6e+02 Score=28.91 Aligned_cols=61 Identities=16% Similarity=0.254 Sum_probs=38.3
Q ss_pred CCCeEEeeccCC-ChHHHHHHHHcCCCc-EEEEEeCC-----------HHHHHHHHHHHHHhCCCceEEEEcchh
Q 009628 261 KGERILDMCAAP-GGKTTAIASLLRDEG-EVVAVDRS-----------HNKVMDIQKLAAEMGLKCITTYKLDAL 322 (530)
Q Consensus 261 pGe~VLDmCAAP-GgKT~~iA~lm~~~G-~VvA~D~s-----------~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (530)
.|.+||=.+|.. +|...++|..+...| +|+..+++ ..+...+.+.+++.|. .+.++..|..
T Consensus 5 ~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~D~~ 78 (256)
T PRK12859 5 KNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGV-KVSSMELDLT 78 (256)
T ss_pred CCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCC-eEEEEEcCCC
Confidence 477888888874 788888887775445 78776542 2333344444555553 3666777753
No 463
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=62.66 E-value=1.1e+02 Score=29.83 Aligned_cols=50 Identities=20% Similarity=0.353 Sum_probs=34.3
Q ss_pred cCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 270 AAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 270 AAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
-|.|+.+.++|..+..+| +|+.++++..++..+... ++. .+.++..|..+
T Consensus 7 Gasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~---~~~-~~~~~~~Dl~~ 57 (248)
T PRK10538 7 GATAGFGECITRRFIQQGHKVIATGRRQERLQELKDE---LGD-NLYIAQLDVRN 57 (248)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH---hcc-ceEEEEecCCC
Confidence 467888888888774444 899999998876655432 332 36667777643
No 464
>PRK06500 short chain dehydrogenase; Provisional
Probab=62.62 E-value=1.5e+02 Score=28.57 Aligned_cols=55 Identities=24% Similarity=0.278 Sum_probs=35.6
Q ss_pred CCeEEeeccCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcch
Q 009628 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321 (530)
Q Consensus 262 Ge~VLDmCAAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da 321 (530)
|.+||= .-|.|+...+++..+..+| +|++++++..++..+. ++++. .+..+..|.
T Consensus 6 ~k~vlI-tGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~---~~~~~-~~~~~~~D~ 61 (249)
T PRK06500 6 GKTALI-TGGTSGIGLETARQFLAEGARVAITGRDPASLEAAR---AELGE-SALVIRADA 61 (249)
T ss_pred CCEEEE-eCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHH---HHhCC-ceEEEEecC
Confidence 445554 4556888898888775455 8999999987665443 34443 255566664
No 465
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=62.57 E-value=70 Score=32.33 Aligned_cols=51 Identities=24% Similarity=0.352 Sum_probs=35.5
Q ss_pred hcCCCCCCeEEeeccCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCC
Q 009628 256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLK 312 (530)
Q Consensus 256 ~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~ 312 (530)
....++|++||=.+ .|+-...++++.+..| +|++++.+..+...++ ++|.+
T Consensus 150 ~~~~~~g~~vlV~g--~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~----~~g~~ 201 (319)
T cd08242 150 QVPITPGDKVAVLG--DGKLGLLIAQVLALTGPDVVLVGRHSEKLALAR----RLGVE 201 (319)
T ss_pred hcCCCCCCEEEEEC--CCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH----HcCCc
Confidence 45678899998873 4777776666654444 7999999988865443 46654
No 466
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=61.94 E-value=18 Score=38.31 Aligned_cols=57 Identities=16% Similarity=0.190 Sum_probs=41.9
Q ss_pred HHHhcCCCCCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 009628 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC 313 (530)
Q Consensus 253 ~~~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~ 313 (530)
+.+..+++||..|-=.+.|.=|.+..........++|+++|+++.|. +.|+++|.+.
T Consensus 184 a~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf----~~ak~fGaTe 240 (375)
T KOG0022|consen 184 AWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKF----EKAKEFGATE 240 (375)
T ss_pred hhhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHH----HHHHhcCcce
Confidence 45677899999987777665454444434445678999999999997 4678889864
No 467
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=61.92 E-value=65 Score=34.03 Aligned_cols=50 Identities=26% Similarity=0.333 Sum_probs=34.6
Q ss_pred cCCCCCCeEEeeccCCChHHHHHHHHcCCCc--EEEEEeCCHHHHHHHHHHHHHhCCC
Q 009628 257 LDPQKGERILDMCAAPGGKTTAIASLLRDEG--EVVAVDRSHNKVMDIQKLAAEMGLK 312 (530)
Q Consensus 257 LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G--~VvA~D~s~~kv~~i~~~a~~~gl~ 312 (530)
...++|++||=. |.|+-...++++.+..| .|++++.+..|. +.++++|++
T Consensus 199 ~~~~~g~~VlV~--g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~----~~~~~~g~~ 250 (384)
T cd08265 199 GGFRPGAYVVVY--GAGPIGLAAIALAKAAGASKVIAFEISEERR----NLAKEMGAD 250 (384)
T ss_pred CCCCCCCEEEEE--CCCHHHHHHHHHHHHcCCCEEEEEcCCHHHH----HHHHHcCCC
Confidence 357899998877 34777666555544444 699999988864 556667764
No 468
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=61.70 E-value=65 Score=33.10 Aligned_cols=49 Identities=22% Similarity=0.293 Sum_probs=29.4
Q ss_pred CCCCCCeEEeeccCCChHHHHHHHHcCCCc--EEEEEeCCHHHHHHHHHHHHHhCCC
Q 009628 258 DPQKGERILDMCAAPGGKTTAIASLLRDEG--EVVAVDRSHNKVMDIQKLAAEMGLK 312 (530)
Q Consensus 258 dpqpGe~VLDmCAAPGgKT~~iA~lm~~~G--~VvA~D~s~~kv~~i~~~a~~~gl~ 312 (530)
..++|++||-.++ |+-..+++++.+..| .|++++.+..|.. .++++|.+
T Consensus 160 ~~~~g~~vlV~g~--g~vg~~~~~la~~~G~~~v~~~~~~~~~~~----~~~~~g~~ 210 (341)
T cd05281 160 GDVSGKSVLITGC--GPIGLMAIAVAKAAGASLVIASDPNPYRLE----LAKKMGAD 210 (341)
T ss_pred cCCCCCEEEEECC--CHHHHHHHHHHHHcCCcEEEEECCCHHHHH----HHHHhCcc
Confidence 4478999888543 554444333333233 6888888888764 34456653
No 469
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=61.43 E-value=21 Score=31.22 Aligned_cols=76 Identities=13% Similarity=0.138 Sum_probs=46.3
Q ss_pred CCCeEEEcCCCCCCCCcccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEecCCCC--CCCHHHHHHHHHhCC
Q 009628 425 SFDRVLLDAPCSALGLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCTINP--GENEALVRYALDRYK 502 (530)
Q Consensus 425 sFDrVLlDaPCSglG~rp~l~~~~~t~~~l~~~~~~Qr~ll~~A~~lLkpGG~LVYSTCSi~~--~ENE~vV~~~L~~~~ 502 (530)
+||.|+-+||.....-...... ...+..++-.-++..|+++| +|.+.|-|-+-.- .+.-...+..|-+..
T Consensus 2 kFD~VIGNPPY~~~~~~~~~~~------~~~~~~dlY~~Fie~~~~ll--~G~~~~I~P~~~l~~~~~~~~lR~~l~~~~ 73 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIKSLSKKKK------KKKKKSDLYILFIEKSLNLL--NGYLSFITPNSFLKSGKYGKKLRKFLLNNT 73 (106)
T ss_pred CcCEEEECCCChhhccccchhh------cccccCcHHHHHHHHHHHHh--CCeEEEEeChHHhCcCchHHHHHHHHhcCC
Confidence 5999999999966542211110 00012334448899999999 8999887765433 555566666664433
Q ss_pred C-ceeec
Q 009628 503 F-LSLAP 508 (530)
Q Consensus 503 ~-~~l~~ 508 (530)
. .+++.
T Consensus 74 ~i~~i~~ 80 (106)
T PF07669_consen 74 NIKKIID 80 (106)
T ss_pred CeeEEEE
Confidence 3 35554
No 470
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=61.34 E-value=1.6e+02 Score=28.73 Aligned_cols=60 Identities=15% Similarity=0.143 Sum_probs=39.6
Q ss_pred CCeEEeeccCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHH-hCCCceEEEEcchh
Q 009628 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAE-MGLKCITTYKLDAL 322 (530)
Q Consensus 262 Ge~VLDmCAAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~-~gl~~i~~~~~Da~ 322 (530)
+.+||=.++ .|+.+.++|..+...| +|+.+|++..+...+.+..+. .+-..+.++..|..
T Consensus 2 ~k~ilItG~-~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 63 (259)
T PRK12384 2 NQVAVVIGG-GQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADAT 63 (259)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCC
Confidence 345666664 5888888887775444 899999999887766544332 22234677777754
No 471
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=61.29 E-value=55 Score=34.79 Aligned_cols=49 Identities=18% Similarity=0.209 Sum_probs=30.1
Q ss_pred CCCCCeEEeeccCCChHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHhCCC
Q 009628 259 PQKGERILDMCAAPGGKTTAIASLLRDE-GEVVAVDRSHNKVMDIQKLAAEMGLK 312 (530)
Q Consensus 259 pqpGe~VLDmCAAPGgKT~~iA~lm~~~-G~VvA~D~s~~kv~~i~~~a~~~gl~ 312 (530)
.++|++||=.++ |+-...++++.+.. .+|+++|.+..+. .+.++++|.+
T Consensus 176 ~~~g~~VlV~G~--G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~---~~~a~~lGa~ 225 (375)
T PLN02178 176 KESGKRLGVNGL--GGLGHIAVKIGKAFGLRVTVISRSSEKE---REAIDRLGAD 225 (375)
T ss_pred CCCCCEEEEEcc--cHHHHHHHHHHHHcCCeEEEEeCChHHh---HHHHHhCCCc
Confidence 368999987654 56555444433322 3699999876542 2445667764
No 472
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=61.17 E-value=23 Score=36.66 Aligned_cols=43 Identities=21% Similarity=0.535 Sum_probs=30.5
Q ss_pred CCCCCCCCeEEEcCCCCCC-CCcccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEecC
Q 009628 420 GFSPNSFDRVLLDAPCSAL-GLRPRLFAAEETIQSLRNHGKYQRRMFDQAVQLVRPGGIIVYSTCT 484 (530)
Q Consensus 420 ~f~~~sFDrVLlDaPCSgl-G~rp~l~~~~~t~~~l~~~~~~Qr~ll~~A~~lLkpGG~LVYSTCS 484 (530)
+.+.++.|+++. |-++ |+ ++ ..++..|.+.||+||.|....-+
T Consensus 223 Pl~d~svDvaV~---CLSLMgt------------------n~-~df~kEa~RiLk~gG~l~IAEv~ 266 (325)
T KOG3045|consen 223 PLEDESVDVAVF---CLSLMGT------------------NL-ADFIKEANRILKPGGLLYIAEVK 266 (325)
T ss_pred cCccCcccEEEe---eHhhhcc------------------cH-HHHHHHHHHHhccCceEEEEehh
Confidence 455688999886 6332 32 11 27899999999999998876544
No 473
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=60.90 E-value=1.5e+02 Score=29.36 Aligned_cols=60 Identities=25% Similarity=0.224 Sum_probs=35.5
Q ss_pred CCCeEEeecc-CCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchh
Q 009628 261 KGERILDMCA-APGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (530)
Q Consensus 261 pGe~VLDmCA-APGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (530)
.|.+||=.+| |.+|...++|..+...| .|+.+++.......+.+..++.+- ...+..|..
T Consensus 5 ~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Dv~ 66 (260)
T PRK06997 5 AGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGS--DLVFPCDVA 66 (260)
T ss_pred CCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHHHHHHHHHHHhcCC--cceeeccCC
Confidence 3667887777 57888888887775444 777776543223334444444442 234566654
No 474
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=60.80 E-value=1.2e+02 Score=29.58 Aligned_cols=51 Identities=29% Similarity=0.391 Sum_probs=32.0
Q ss_pred HhcCCCCCCeEEeeccCCChHHH---HHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC
Q 009628 255 HALDPQKGERILDMCAAPGGKTT---AIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK 312 (530)
Q Consensus 255 ~~LdpqpGe~VLDmCAAPGgKT~---~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~ 312 (530)
+....++|++||=. .|.|+-.. ++|..++ ..|++++.+..+...+ +++|++
T Consensus 114 ~~~~~~~g~~vli~-~~~~~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~----~~~g~~ 167 (303)
T cd08251 114 ARAGLAKGEHILIQ-TATGGTGLMAVQLARLKG--AEIYATASSDDKLEYL----KQLGVP 167 (303)
T ss_pred HhcCCCCCCEEEEe-cCCcHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHH----HHcCCC
Confidence 45567889988744 34455444 4444443 4799999988776544 446664
No 475
>PRK10458 DNA cytosine methylase; Provisional
Probab=60.76 E-value=35 Score=37.92 Aligned_cols=43 Identities=16% Similarity=0.203 Sum_probs=33.4
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHH
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKL 305 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~ 305 (530)
..-+++|++||-||.+..+-.. + --.|.|+|.++..++..+.|
T Consensus 87 ~~~~~iDLFsGiGGl~lGfe~a-G-~~~v~a~Eid~~A~~TY~~N 129 (467)
T PRK10458 87 YAFRFIDLFAGIGGIRRGFEAI-G-GQCVFTSEWNKHAVRTYKAN 129 (467)
T ss_pred CCceEEEeCcCccHHHHHHHHc-C-CEEEEEEechHHHHHHHHHH
Confidence 3568999999999999887542 2 12678899999988877765
No 476
>PRK05693 short chain dehydrogenase; Provisional
Probab=60.73 E-value=1.2e+02 Score=30.09 Aligned_cols=48 Identities=27% Similarity=0.392 Sum_probs=32.9
Q ss_pred eccCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchh
Q 009628 268 MCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (530)
Q Consensus 268 mCAAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (530)
+.-|.||.+.++++.+..+| .|++++++..++..+.. .+ +..+..|..
T Consensus 6 ItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~----~~---~~~~~~Dl~ 54 (274)
T PRK05693 6 ITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAA----AG---FTAVQLDVN 54 (274)
T ss_pred EecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----CC---CeEEEeeCC
Confidence 45567899999988775445 89999999887655432 22 445666643
No 477
>PRK08589 short chain dehydrogenase; Validated
Probab=60.28 E-value=1.7e+02 Score=29.12 Aligned_cols=58 Identities=22% Similarity=0.169 Sum_probs=37.5
Q ss_pred CCeEEeeccCCChHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchh
Q 009628 262 GERILDMCAAPGGKTTAIASLLR-DEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (530)
Q Consensus 262 Ge~VLDmCAAPGgKT~~iA~lm~-~~G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (530)
|.+||= .-|.||...++|..+. ...+|+.++++ .++..+.+..++.+. .+.++..|..
T Consensus 6 ~k~vlI-tGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~~-~~~~~~~Dl~ 64 (272)
T PRK08589 6 NKVAVI-TGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNGG-KAKAYHVDIS 64 (272)
T ss_pred CCEEEE-ECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcCC-eEEEEEeecC
Confidence 556664 4455777888887664 34599999999 666665555554442 3667777754
No 478
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=60.26 E-value=46 Score=33.31 Aligned_cols=62 Identities=19% Similarity=0.247 Sum_probs=45.1
Q ss_pred CCCeEEeeccCCCh--HHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-eEEEEcchh
Q 009628 261 KGERILDMCAAPGG--KTTAIASLL-RDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDAL 322 (530)
Q Consensus 261 pGe~VLDmCAAPGg--KT~~iA~lm-~~~G~VvA~D~s~~kv~~i~~~a~~~gl~~-i~~~~~Da~ 322 (530)
.-..|++.|+.-|. -|+.||... +-.|+++++-.++......++...++|++. ++++..|+.
T Consensus 41 nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~ 106 (218)
T PF07279_consen 41 NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAP 106 (218)
T ss_pred cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCH
Confidence 34579999776443 455665544 345799999999999888888888888854 677777643
No 479
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=60.16 E-value=87 Score=32.02 Aligned_cols=51 Identities=18% Similarity=0.322 Sum_probs=33.2
Q ss_pred hcCCCCCCeEEeeccCCChHHHHHHHHcCCCc--EEEEEeCCHHHHHHHHHHHHHhCCC
Q 009628 256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEG--EVVAVDRSHNKVMDIQKLAAEMGLK 312 (530)
Q Consensus 256 ~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G--~VvA~D~s~~kv~~i~~~a~~~gl~ 312 (530)
....++|+.||=. |.|+-...++++.+..| .|++++.+..+. +.++++|.+
T Consensus 163 ~~~~~~g~~vlI~--g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~----~~~~~~ga~ 215 (345)
T cd08287 163 SAGVRPGSTVVVV--GDGAVGLCAVLAAKRLGAERIIAMSRHEDRQ----ALAREFGAT 215 (345)
T ss_pred hcCCCCCCEEEEE--CCCHHHHHHHHHHHHcCCCEEEEECCCHHHH----HHHHHcCCc
Confidence 4567889888774 35666665555544444 489999998664 345566764
No 480
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=59.97 E-value=1.1e+02 Score=31.14 Aligned_cols=52 Identities=19% Similarity=0.201 Sum_probs=34.0
Q ss_pred HhcCCCCCCeEEeeccCC--ChHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC
Q 009628 255 HALDPQKGERILDMCAAP--GGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK 312 (530)
Q Consensus 255 ~~LdpqpGe~VLDmCAAP--GgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~ 312 (530)
+.+.+++|++||=.++++ |--+.++|..++ -.|+++..+..+...+ +++|.+
T Consensus 159 ~~~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g--~~v~~~~~~~~~~~~~----~~~g~~ 212 (341)
T cd08297 159 KKAGLKPGDWVVISGAGGGLGHLGVQYAKAMG--LRVIAIDVGDEKLELA----KELGAD 212 (341)
T ss_pred HhcCCCCCCEEEEECCCchHHHHHHHHHHHCC--CeEEEEeCCHHHHHHH----HHcCCc
Confidence 345788999999776643 444445555543 3799999998776433 456654
No 481
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=59.96 E-value=1.8e+02 Score=28.44 Aligned_cols=61 Identities=18% Similarity=0.166 Sum_probs=41.0
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
.+.+||=.++ .|+...+++..+...| +|+.++++..++..+.+..+..+- .+.++..|...
T Consensus 10 ~~k~vlVtG~-s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~ 71 (255)
T PRK06113 10 DGKCAIITGA-GAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGG-QAFACRCDITS 71 (255)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccCCC
Confidence 3667887774 5777777877664444 899999999888776555554442 35566777543
No 482
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=59.90 E-value=1e+02 Score=30.72 Aligned_cols=52 Identities=23% Similarity=0.288 Sum_probs=35.2
Q ss_pred HhcCCCCCCeEEeeccCCChHHHHHHHHcCCCc-E-EEEEeCCHHHHHHHHHHHHHhCCC
Q 009628 255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEG-E-VVAVDRSHNKVMDIQKLAAEMGLK 312 (530)
Q Consensus 255 ~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G-~-VvA~D~s~~kv~~i~~~a~~~gl~ 312 (530)
+....++|++||=. + .|+-...++++.+..| . |+++..+..+.. .++++|++
T Consensus 123 ~~~~~~~~~~vlI~-g-~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~----~~~~~g~~ 176 (312)
T cd08269 123 RRGWIRAGKTVAVI-G-AGFIGLLFLQLAAAAGARRVIAIDRRPARLA----LARELGAT 176 (312)
T ss_pred HhcCCCCCCEEEEE-C-CCHHHHHHHHHHHHcCCcEEEEECCCHHHHH----HHHHhCCc
Confidence 34567889998887 3 4777666666554444 5 899988887765 44556753
No 483
>PRK08263 short chain dehydrogenase; Provisional
Probab=59.72 E-value=1.4e+02 Score=29.61 Aligned_cols=56 Identities=21% Similarity=0.232 Sum_probs=37.4
Q ss_pred CeEEeeccCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 263 ERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 263 e~VLDmCAAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
.+||=.+ |.|+.+.+++..+..+| +|+++++++.++..+.+. ++ ..+..++.|...
T Consensus 4 k~vlItG-asg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~---~~-~~~~~~~~D~~~ 60 (275)
T PRK08263 4 KVWFITG-ASRGFGRAWTEAALERGDRVVATARDTATLADLAEK---YG-DRLLPLALDVTD 60 (275)
T ss_pred CEEEEeC-CCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHh---cc-CCeeEEEccCCC
Confidence 4566555 56888889988774444 899999998887655432 22 236667777543
No 484
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=59.55 E-value=85 Score=31.86 Aligned_cols=47 Identities=19% Similarity=0.227 Sum_probs=28.0
Q ss_pred CCeEEeeccCCChHHHHHHHHcCC--CcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 009628 262 GERILDMCAAPGGKTTAIASLLRD--EGEVVAVDRSHNKVMDIQKLAAEMGLKC 313 (530)
Q Consensus 262 Ge~VLDmCAAPGgKT~~iA~lm~~--~G~VvA~D~s~~kv~~i~~~a~~~gl~~ 313 (530)
|++||=..| .|+-...++++.+. ...|+++..+..+...+ +++|.+.
T Consensus 149 g~~vlV~ga-~g~vg~~~~~~ak~~~G~~vi~~~~~~~~~~~l----~~~g~~~ 197 (336)
T TIGR02817 149 KRALLIIGG-AGGVGSILIQLARQLTGLTVIATASRPESQEWV----LELGAHH 197 (336)
T ss_pred CCEEEEEcC-CcHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHH----HHcCCCE
Confidence 889887654 34444443333332 24799998888775433 4567643
No 485
>PRK07074 short chain dehydrogenase; Provisional
Probab=59.49 E-value=1.4e+02 Score=29.07 Aligned_cols=56 Identities=21% Similarity=0.238 Sum_probs=36.3
Q ss_pred eEEeeccCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 264 RILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 264 ~VLDmCAAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
+||= .-|.|+.+.+++..+..+| +|++++++..+...+.+. +.-..+.++..|...
T Consensus 4 ~ilI-tGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~---~~~~~~~~~~~D~~~ 60 (257)
T PRK07074 4 TALV-TGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADA---LGDARFVPVACDLTD 60 (257)
T ss_pred EEEE-ECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---hcCCceEEEEecCCC
Confidence 4443 3456778888887775444 999999998877655432 221246677777643
No 486
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=58.78 E-value=97 Score=31.12 Aligned_cols=46 Identities=17% Similarity=0.236 Sum_probs=28.4
Q ss_pred HhcCCCCCCeEEeeccC--CChHHHHHHHHcCCCcEEEEEeCCHHHHHHH
Q 009628 255 HALDPQKGERILDMCAA--PGGKTTAIASLLRDEGEVVAVDRSHNKVMDI 302 (530)
Q Consensus 255 ~~LdpqpGe~VLDmCAA--PGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i 302 (530)
+...+++|++||=.+++ -|-.+.++|..++ ..|+++..+..+...+
T Consensus 133 ~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G--~~v~~~~~~~~~~~~~ 180 (324)
T cd08292 133 DFLGVKPGQWLIQNAAGGAVGKLVAMLAAARG--INVINLVRRDAGVAEL 180 (324)
T ss_pred HhhCCCCCCEEEEcccccHHHHHHHHHHHHCC--CeEEEEecCHHHHHHH
Confidence 44578899998876542 3444445555543 3677777777665444
No 487
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=58.73 E-value=1e+02 Score=31.51 Aligned_cols=49 Identities=24% Similarity=0.272 Sum_probs=30.0
Q ss_pred hcCCCCCCeEEeeccCCChHHH---HHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhCCC
Q 009628 256 ALDPQKGERILDMCAAPGGKTT---AIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK 312 (530)
Q Consensus 256 ~LdpqpGe~VLDmCAAPGgKT~---~iA~lm~~~G~VvA~D~s~~kv~~i~~~a~~~gl~ 312 (530)
....++|++||=.++ +|+-.. ++|..++ ..|++++.+. +. +.++++|++
T Consensus 172 ~~~~~~g~~vlI~g~-~g~ig~~~~~~a~~~g--~~vi~~~~~~-~~----~~~~~~g~~ 223 (350)
T cd08274 172 RAGVGAGETVLVTGA-SGGVGSALVQLAKRRG--AIVIAVAGAA-KE----EAVRALGAD 223 (350)
T ss_pred hcCCCCCCEEEEEcC-CcHHHHHHHHHHHhcC--CEEEEEeCch-hh----HHHHhcCCe
Confidence 345788999988766 344444 4444442 4688888654 43 344567764
No 488
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=58.42 E-value=1.3e+02 Score=30.62 Aligned_cols=52 Identities=23% Similarity=0.290 Sum_probs=33.9
Q ss_pred HhcCCCCCCeEEeeccCCChHHHHHHHHcCC--CcEEEEEeCCHHHHHHHHHHHHHhCCC
Q 009628 255 HALDPQKGERILDMCAAPGGKTTAIASLLRD--EGEVVAVDRSHNKVMDIQKLAAEMGLK 312 (530)
Q Consensus 255 ~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~--~G~VvA~D~s~~kv~~i~~~a~~~gl~ 312 (530)
.....++|++||=.++ |+-...++++.+. ...|++++.+..+...+ +++|.+
T Consensus 156 ~~~~~~~g~~vlV~g~--g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~----~~~g~~ 209 (338)
T PRK09422 156 KVSGIKPGQWIAIYGA--GGLGNLALQYAKNVFNAKVIAVDINDDKLALA----KEVGAD 209 (338)
T ss_pred HhcCCCCCCEEEEECC--cHHHHHHHHHHHHhCCCeEEEEeCChHHHHHH----HHcCCc
Confidence 4456789999988873 5544444333331 35899999999886655 445654
No 489
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=58.34 E-value=1e+02 Score=31.64 Aligned_cols=52 Identities=19% Similarity=0.240 Sum_probs=33.7
Q ss_pred HhcCCCCCCeEEeeccCCChHHHHHHHHcCCCc-E-EEEEeCCHHHHHHHHHHHHHhCCC
Q 009628 255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEG-E-VVAVDRSHNKVMDIQKLAAEMGLK 312 (530)
Q Consensus 255 ~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G-~-VvA~D~s~~kv~~i~~~a~~~gl~ 312 (530)
.....++|++||=.+ .|+-...++++.+..| . |++++.+..+...+ +++|.+
T Consensus 156 ~~~~~~~g~~vlI~g--~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~----~~~g~~ 209 (343)
T cd05285 156 RRAGVRPGDTVLVFG--AGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFA----KELGAT 209 (343)
T ss_pred HhcCCCCCCEEEEEC--CCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHH----HHcCCc
Confidence 456688999999864 3565555544444334 4 89999998876544 334654
No 490
>PRK06138 short chain dehydrogenase; Provisional
Probab=58.16 E-value=1.5e+02 Score=28.61 Aligned_cols=58 Identities=26% Similarity=0.227 Sum_probs=37.8
Q ss_pred CCeEEeeccCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchh
Q 009628 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (530)
Q Consensus 262 Ge~VLDmCAAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (530)
|.+||=.+| .|+.+.++|..+..+| +|++++++..+.....+..+ .+ ..+..+..|..
T Consensus 5 ~k~~lItG~-sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~~-~~~~~~~~D~~ 63 (252)
T PRK06138 5 GRVAIVTGA-GSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-AG-GRAFARQGDVG 63 (252)
T ss_pred CcEEEEeCC-CchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-cC-CeEEEEEcCCC
Confidence 445555544 6888999988664444 89999999877665544333 22 23667777754
No 491
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=57.24 E-value=91 Score=31.48 Aligned_cols=45 Identities=20% Similarity=0.285 Sum_probs=28.2
Q ss_pred cCCCCCCeEEeeccCCChHHHHHHHHcCCC-cEEEEEeCCHHHHHHH
Q 009628 257 LDPQKGERILDMCAAPGGKTTAIASLLRDE-GEVVAVDRSHNKVMDI 302 (530)
Q Consensus 257 LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~-G~VvA~D~s~~kv~~i 302 (530)
....+|++||=.++ .|+-...++++.+.. ..|++++.+..+...+
T Consensus 141 ~~~~~~~~vlI~g~-~g~ig~~~~~~a~~~G~~vi~~~~~~~~~~~~ 186 (329)
T cd05288 141 GKPKPGETVVVSAA-AGAVGSVVGQIAKLLGARVVGIAGSDEKCRWL 186 (329)
T ss_pred cCCCCCCEEEEecC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 34678888885543 455554444443322 3899999998876544
No 492
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=57.12 E-value=1.1e+02 Score=31.58 Aligned_cols=52 Identities=13% Similarity=0.223 Sum_probs=33.3
Q ss_pred HhcCCCCCCeEEeeccCCChHHHHHHHHcCCCc--EEEEEeCCHHHHHHHHHHHHHhCCC
Q 009628 255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEG--EVVAVDRSHNKVMDIQKLAAEMGLK 312 (530)
Q Consensus 255 ~~LdpqpGe~VLDmCAAPGgKT~~iA~lm~~~G--~VvA~D~s~~kv~~i~~~a~~~gl~ 312 (530)
.....++|++||= .|.|+-...++++.+..| .|+++|.+..|.. .++++|++
T Consensus 168 ~~~~~~~g~~vlI--~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~----~~~~~g~~ 221 (350)
T cd08256 168 DRANIKFDDVVVL--AGAGPLGLGMIGAARLKNPKKLIVLDLKDERLA----LARKFGAD 221 (350)
T ss_pred HhcCCCCCCEEEE--ECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHH----HHHHcCCc
Confidence 4456789998876 444666654444443333 6889999988763 44566764
No 493
>PRK08177 short chain dehydrogenase; Provisional
Probab=56.87 E-value=70 Score=30.69 Aligned_cols=48 Identities=23% Similarity=0.293 Sum_probs=32.4
Q ss_pred eccCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcch
Q 009628 268 MCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321 (530)
Q Consensus 268 mCAAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da 321 (530)
+.-|.|+.+.++|..+...| .|++++++..+...+.+ + ..+..++.|.
T Consensus 6 ItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~----~--~~~~~~~~D~ 54 (225)
T PRK08177 6 IIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQA----L--PGVHIEKLDM 54 (225)
T ss_pred EeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHHHh----c--cccceEEcCC
Confidence 34457889999888775555 89999999887655432 1 2345555664
No 494
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=56.87 E-value=1.6e+02 Score=29.07 Aligned_cols=61 Identities=21% Similarity=0.262 Sum_probs=37.3
Q ss_pred CCCeEEeecc-CCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchhH
Q 009628 261 KGERILDMCA-APGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (530)
Q Consensus 261 pGe~VLDmCA-APGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~k 323 (530)
.|..||=-+| |.+|...++|..+...| .|+..+++......+++..++.|- ...+..|..+
T Consensus 5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Dv~~ 67 (261)
T PRK08690 5 QGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAELDS--ELVFRCDVAS 67 (261)
T ss_pred CCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhccCC--ceEEECCCCC
Confidence 3567776676 57888888888775444 788877764333444454444442 3456677543
No 495
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=56.81 E-value=81 Score=31.77 Aligned_cols=47 Identities=26% Similarity=0.228 Sum_probs=29.1
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHhCCC
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRDE-GEVVAVDRSHNKVMDIQKLAAEMGLK 312 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~~-G~VvA~D~s~~kv~~i~~~a~~~gl~ 312 (530)
.|++||=.++ +|+-...++++.+.. ..|++++.+..+... ++++|.+
T Consensus 146 ~~~~vlI~g~-~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~----~~~~g~~ 193 (326)
T cd08289 146 EQGPVLVTGA-TGGVGSLAVSILAKLGYEVVASTGKADAADY----LKKLGAK 193 (326)
T ss_pred CCCEEEEEcC-CchHHHHHHHHHHHCCCeEEEEecCHHHHHH----HHHcCCC
Confidence 4678877655 355555444444333 379999999888544 3456753
No 496
>PRK08265 short chain dehydrogenase; Provisional
Probab=56.72 E-value=2e+02 Score=28.34 Aligned_cols=56 Identities=20% Similarity=0.168 Sum_probs=37.0
Q ss_pred CCeEEeeccCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchh
Q 009628 262 GERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (530)
Q Consensus 262 Ge~VLDmCAAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (530)
|.+||=.+ |.||...++|..+..+| .|+.+|++..++..+. ++.+ ..+.++..|..
T Consensus 6 ~k~vlItG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~---~~~~-~~~~~~~~Dl~ 62 (261)
T PRK08265 6 GKVAIVTG-GATLIGAAVARALVAAGARVAIVDIDADNGAAVA---ASLG-ERARFIATDIT 62 (261)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH---HHhC-CeeEEEEecCC
Confidence 45666555 55778888887765444 8999999987765543 3433 23666777764
No 497
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=56.64 E-value=1.9e+02 Score=29.63 Aligned_cols=47 Identities=17% Similarity=0.338 Sum_probs=28.6
Q ss_pred HHHHHHhcCCCCCEEEEEecCCCCCCCHHHHHHHHHhCC-CceeecCCCCCCC
Q 009628 464 MFDQAVQLVRPGGIIVYSTCTINPGENEALVRYALDRYK-FLSLAPQHPRIGG 515 (530)
Q Consensus 464 ll~~A~~lLkpGG~LVYSTCSi~~~ENE~vV~~~L~~~~-~~~l~~~~p~~g~ 515 (530)
++......+++|. +|...+|+. ..++..+....+ .+..++.||-.|.
T Consensus 82 v~~~l~~~l~~~~-iv~dvgs~k----~~~~~~~~~~~~~~~~~v~~hPm~g~ 129 (307)
T PRK07502 82 VAAEIAPHLKPGA-IVTDVGSVK----ASVIAAMAPHLPEGVHFIPGHPLAGT 129 (307)
T ss_pred HHHHHHhhCCCCC-EEEeCccch----HHHHHHHHHhCCCCCeEEeCCCCCCC
Confidence 3444445688876 445555553 455655555444 4678888887764
No 498
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=56.12 E-value=1.4e+02 Score=29.19 Aligned_cols=57 Identities=21% Similarity=0.318 Sum_probs=38.2
Q ss_pred CCCeEEeeccCCChHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchh
Q 009628 261 KGERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (530)
Q Consensus 261 pGe~VLDmCAAPGgKT~~iA~lm~~~G-~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (530)
.|.+||=.+| .||.+.++|..+...| .|+.++++..++..+.+ +++ ..+..+..|..
T Consensus 5 ~~k~vlVtGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~---~~~-~~~~~~~~D~~ 62 (263)
T PRK06200 5 HGQVALITGG-GSGIGRALVERFLAEGARVAVLERSAEKLASLRQ---RFG-DHVLVVEGDVT 62 (263)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---HhC-CcceEEEccCC
Confidence 3566776665 5778888887775445 89999999888765433 333 23566667654
No 499
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=56.11 E-value=2.8e+02 Score=30.31 Aligned_cols=33 Identities=15% Similarity=0.293 Sum_probs=26.2
Q ss_pred CCChHHHHHHHHcCCCcEEEEEeCCHHHHHHHH
Q 009628 271 APGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQ 303 (530)
Q Consensus 271 APGgKT~~iA~lm~~~G~VvA~D~s~~kv~~i~ 303 (530)
|-|--...+|..+...-+|+++|+++.|++.+.
T Consensus 13 GlGyvGlpmA~~la~~~~V~g~D~~~~~ve~l~ 45 (425)
T PRK15182 13 GLGYVGLPLAVEFGKSRQVVGFDVNKKRILELK 45 (425)
T ss_pred CcCcchHHHHHHHhcCCEEEEEeCCHHHHHHHH
Confidence 667777777777765569999999999998765
No 500
>PRK07041 short chain dehydrogenase; Provisional
Probab=56.00 E-value=1.9e+02 Score=27.55 Aligned_cols=51 Identities=22% Similarity=0.287 Sum_probs=33.8
Q ss_pred cCCChHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHhCCCceEEEEcchh
Q 009628 270 AAPGGKTTAIASLLRDE-GEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (530)
Q Consensus 270 AAPGgKT~~iA~lm~~~-G~VvA~D~s~~kv~~i~~~a~~~gl~~i~~~~~Da~ 322 (530)
-|.|+...+++..+..+ -+|+++++++.++..+.+..++ + ..+.++..|..
T Consensus 4 Gas~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-~-~~~~~~~~Dl~ 55 (230)
T PRK07041 4 GGSSGIGLALARAFAAEGARVTIASRSRDRLAAAARALGG-G-APVRTAALDIT 55 (230)
T ss_pred cCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-C-CceEEEEccCC
Confidence 46788888888776444 4899999998877665443321 2 23566777754
Done!