BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009630
(530 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WSU|A Chain A, Galectin Domain Of Porcine Adenovirus Type 4 Nadc-1
Isolate Fibre
pdb|2WSU|B Chain B, Galectin Domain Of Porcine Adenovirus Type 4 Nadc-1
Isolate Fibre
pdb|2WSU|C Chain C, Galectin Domain Of Porcine Adenovirus Type 4 Nadc-1
Isolate Fibre
pdb|2WSU|D Chain D, Galectin Domain Of Porcine Adenovirus Type 4 Nadc-1
Isolate Fibre
pdb|2WSV|A Chain A, Galectin Domain Of Porcine Adenovirus Type 4 Nadc-1
Isolate Fibre Complexed With Lactose
pdb|2WT0|A Chain A, Galectin Domain Of Porcine Adenovirus Type 4 Nadc-1
Isolate Fibre Complexed With N-Acetyl-Lactosamine
pdb|2WT1|A Chain A, Galectin Domain Of Porcine Adenovirus Type 4 Nadc-1
Isolate Fibre Complexed With Lacto-N-Neo-Tetraose
pdb|2WT2|A Chain A, Galectin Domain Of Porcine Adenovirus Type 4 Nadc-1
Isolate Fibre Complexed With Tri(N-Acetyl-Lactosamine)
pdb|2WT2|B Chain B, Galectin Domain Of Porcine Adenovirus Type 4 Nadc-1
Isolate Fibre Complexed With Tri(N-Acetyl-Lactosamine)
Length = 343
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 345 FPFEERKLFVLTLRAGLEGYHVSVDGKHVTSFPYRTGFTLEDATGLTVSGDV 396
FPFE K FVL + + Y ++V+GK + FP R L+ T ++SGD+
Sbjct: 108 FPFEREKPFVLVIVIQSDTYQITVNGKPLVDFPQR----LQGITRASLSGDL 155
>pdb|1X50|A Chain A, Solution Structure Of The C-Terminal Gal-Bind Lectin
Domain From Human Galectin-4
Length = 164
Score = 35.4 bits (80), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 13/85 (15%)
Query: 331 GSDTEKVTTDWSSPFPFEERKLFVLTLRAGLEGYHVSVDGKHVTSFPYR-TGFTLEDATG 389
GS+ +K+T + PF + F L++R GL+ + V +G+H+ F +R + F D
Sbjct: 92 GSEEKKITHN-----PFGPGQFFDLSIRCGLDRFKVYANGQHLFDFAHRLSAFQRVDT-- 144
Query: 390 LTVSGDVDVRDIFAASLPTTHPSSG 414
L + GDV + + + + PSSG
Sbjct: 145 LEIQGDVTL-----SYVQISGPSSG 164
>pdb|3ZSK|A Chain A, Crystal Structure Of Human Galectin-3 Crd With Glycerol
Bound At 0.90 Angstrom Resolution
pdb|3ZSL|A Chain A, Crystal Structure Of Apo Human Galectin-3 Crd At 1.08
Angstrom Resolution, At Cryogenic Temperature
pdb|3ZSM|A Chain A, Crystal Structure Of Apo Human Galectin-3 Crd At 1.25
Angstrom Resolution, At Room Temperature
Length = 138
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 328 KRLGSDTEKVTTDWS-----SPFPFEERKLFVLTLRAGLEGYHVSVDGKHVTSFPYRTGF 382
+R+ K+ +W S FPFE K F + + + + V+V+ H+ + +R
Sbjct: 56 RRVIVCNTKLDNNWGREERQSVFPFESGKPFKIQVLVEPDHFKVAVNDAHLLQYNHRVK- 114
Query: 383 TLEDATGLTVSGDVDV 398
L + + L +SGD+D+
Sbjct: 115 KLNEISKLGISGDIDL 130
>pdb|1A3K|A Chain A, X-Ray Crystal Structure Of The Human Galectin-3
Carbohydrate Recognition Domain (Crd) At 2.1 Angstrom
Resolution
Length = 137
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 328 KRLGSDTEKVTTDWS-----SPFPFEERKLFVLTLRAGLEGYHVSVDGKHVTSFPYRTGF 382
+R+ K+ +W S FPFE K F + + + + V+V+ H+ + +R
Sbjct: 55 RRVIVCNTKLDNNWGREERQSVFPFESGKPFKIQVLVEPDHFKVAVNDAHLLQYNHRVK- 113
Query: 383 TLEDATGLTVSGDVDV 398
L + + L +SGD+D+
Sbjct: 114 KLNEISKLGISGDIDL 129
>pdb|2XG3|A Chain A, Human Galectin-3 In Complex With A Benzamido-N-
Acetyllactoseamine Inhibitor
Length = 138
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 328 KRLGSDTEKVTTDWS-----SPFPFEERKLFVLTLRAGLEGYHVSVDGKHVTSFPYRTGF 382
+R+ K+ +W S FPFE K F + + + + V+V+ H+ + +R
Sbjct: 56 RRVIVCNTKLDNNWGREERQSVFPFESGKPFKIQVLVEPDHFKVAVNDAHLLQYNHRVK- 114
Query: 383 TLEDATGLTVSGDVDV 398
L + + L +SGD+D+
Sbjct: 115 KLNEISKLGISGDIDL 130
>pdb|2NMN|A Chain A, Crystal Structure Of Human Galectin-3 Carbohydrate-
Recognising Domain At 2.45 Angstrom Resolution
pdb|2NMO|A Chain A, Crystal Structure Of Human Galectin-3
Carbohydrate-Recognition Domain At 1.35 Angstrom
Resolution
pdb|2NN8|A Chain A, Crystal Structure Of Human Galectin-3
Carbohydrate-Recognition Domain With Lactose Bound, At
1.35 Angstrom Resolution
pdb|3ZSJ|A Chain A, Crystal Structure Of Human Galectin-3 Crd In Complex With
Lactose At 0.86 Angstrom Resolution
Length = 138
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 328 KRLGSDTEKVTTDWS-----SPFPFEERKLFVLTLRAGLEGYHVSVDGKHVTSFPYRTGF 382
+R+ K+ +W S FPFE K F + + + + V+V+ H+ + +R
Sbjct: 56 RRVIVCNTKLDNNWGREERQSVFPFESGKPFKIQVLVEPDHFKVAVNDAHLLQYNHRVK- 114
Query: 383 TLEDATGLTVSGDVDV 398
L + + L +SGD+D+
Sbjct: 115 KLNEISKLGISGDIDL 130
>pdb|3AYA|A Chain A, Crystal Structure Of Galectin-3 Crd Domian Complexed With
Thomsen- Friedenreich Antigen
pdb|3AYA|B Chain B, Crystal Structure Of Galectin-3 Crd Domian Complexed With
Thomsen- Friedenreich Antigen
pdb|3AYC|A Chain A, Crystal Structure Of Galectin-3 Crd Domian Complexed With
Gm1 Pentasaccharide
pdb|3AYC|B Chain B, Crystal Structure Of Galectin-3 Crd Domian Complexed With
Gm1 Pentasaccharide
pdb|3AYD|A Chain A, Crystal Structure Of Galectin-3 Crd Domian Complexed With
Tfn
pdb|3AYE|A Chain A, Crystal Structure Of Galectin-3 Crd Domian Complexed With
Lactose
pdb|3AYE|B Chain B, Crystal Structure Of Galectin-3 Crd Domian Complexed With
Lactose
Length = 135
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 336 KVTTDWS-----SPFPFEERKLFVLTLRAGLEGYHVSVDGKHVTSFPYRTGFTLEDATGL 390
K+ +W S FPFE K F + + + + V+V+ H+ + +R L + + L
Sbjct: 61 KLDNNWGREERQSVFPFESGKPFKIQVLVEPDHFKVAVNDAHLLQYNHRVK-KLNEISKL 119
Query: 391 TVSGDVDV 398
+SGD+D+
Sbjct: 120 GISGDIDL 127
>pdb|3T1L|A Chain A, Crystal Structure Of Human Galectin-3 In Complex With
Methyl 2-O- Acetyl-3-O-Toluoyl-Beta-D-Talopyranoside
pdb|3T1M|A Chain A, Crystal Structure Of Human Galectin-3 Carbohydrate
Recognition Domain In Complex With Methyl
3-Deoxy-2-O-Toluoyl-3-N-Toluoyl-Beta-D- Talopyranoside
Length = 143
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 336 KVTTDWS-----SPFPFEERKLFVLTLRAGLEGYHVSVDGKHVTSFPYRTGFTLEDATGL 390
K+ +W S FPFE K F + + + + V+V+ H+ + +R L + + L
Sbjct: 69 KLDNNWGREERQSVFPFESGKPFKIQVLVEPDHFKVAVNDAHLLQYNHRVK-KLNEISKL 127
Query: 391 TVSGDVDV 398
+SGD+D+
Sbjct: 128 GISGDIDL 135
>pdb|1KJL|A Chain A, High Resolution X-Ray Structure Of Human Galectin-3 In
Complex With Lacnac
pdb|1KJR|A Chain A, Crystal Structure Of The Human Galectin-3 Crd In Complex
With A 3'- Derivative Of N-Acetyllactosamine
Length = 146
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 336 KVTTDWS-----SPFPFEERKLFVLTLRAGLEGYHVSVDGKHVTSFPYRTGFTLEDATGL 390
K+ +W S FPFE K F + + + + V+V+ H+ + +R L + + L
Sbjct: 72 KLDNNWGREERQSVFPFESGKPFKIQVLVEPDHFKVAVNDAHLLQYNHRVK-KLNEISKL 130
Query: 391 TVSGDVDV 398
+SGD+D+
Sbjct: 131 GISGDIDL 138
>pdb|2YV8|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Galectin-8
pdb|2YXS|A Chain A, Crystal Sturcture Of N-Terminal Domain Of Human Galectin-8
With D- Lactose
Length = 164
Score = 31.2 bits (69), Expect = 1.5, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 11/80 (13%)
Query: 335 EKVTTDWSSPFPFEERKLFVLTLRAGLEGYHVSVDGKHVTSFPYRTGFTLEDATGLTVSG 394
E++T D PF+ K F + + + + V+V+GKH + +R G D G + G
Sbjct: 96 EEITYD----TPFKREKSFEIVIXVLKDKFQVAVNGKHTLLYGHRIGPEKIDTLG--IYG 149
Query: 395 DVDVRDIFAASLPTTHPSSG 414
V++ S+ + PSSG
Sbjct: 150 KVNIH-----SIGFSGPSSG 164
>pdb|2DYC|A Chain A, Crystal Structure Of The N-Terminal Domain Of Mouse
Galectin-4
Length = 158
Score = 30.8 bits (68), Expect = 1.7, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 346 PFEERKLFVLTLRAGLEGYHVSVDGKHVTSFPYRTGFTLEDATGLTVSGDVDVRDI-FAA 404
PF++ K F L E Y V V+G + +R ++ T L V GD++++ I F
Sbjct: 93 PFQKGKHFELVFXVXPEHYKVVVNGNSFYEYGHR--LPVQXVTHLQVDGDLELQSINFLG 150
Query: 405 SLPTTHP 411
P P
Sbjct: 151 GQPAAAP 157
>pdb|4FQZ|A Chain A, Crystal Structure Of A Protease-Resistant Mutant Form Of
Human Galectin-8
pdb|3VKL|A Chain A, Protease-Resistant Mutant Form Of Human Galectin-8 In
Complex With Two Lactose Molecules
pdb|3VKL|B Chain B, Protease-Resistant Mutant Form Of Human Galectin-8 In
Complex With Two Lactose Molecules
pdb|3VKM|A Chain A, Protease-Resistant Mutant Form Of Human Galectin-8 In
Complex With Sialyllactose And Lactose
pdb|3VKM|B Chain B, Protease-Resistant Mutant Form Of Human Galectin-8 In
Complex With Sialyllactose And Lactose
Length = 291
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 335 EKVTTDWSSPFPFEERKLFVLTLRAGLEGYHVSVDGKHVTSFPYRTGFTLEDATGLTVSG 394
E++T D PF+ K F + + + + V+V+GKH + +R G E L + G
Sbjct: 89 EEITYDT----PFKREKSFEIVIMVLKDKFQVAVNGKHTLLYGHRIG--PEKIDTLGIYG 142
Query: 395 DVDVRDI 401
V++ I
Sbjct: 143 KVNIHSI 149
>pdb|3VKN|A Chain A, Galectin-8 N-Terminal Domain In Free Form
pdb|3VKN|B Chain B, Galectin-8 N-Terminal Domain In Free Form
pdb|3VKO|A Chain A, Galectin-8 N-Terminal Domain In Complex With
Sialyllactosamine
pdb|3VKO|B Chain B, Galectin-8 N-Terminal Domain In Complex With
Sialyllactosamine
Length = 153
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 335 EKVTTDWSSPFPFEERKLFVLTLRAGLEGYHVSVDGKHVTSFPYRTGFTLEDATGLTVSG 394
E++T D PF+ K F + + + + V+V+GKH + +R G E L + G
Sbjct: 89 EEITYDT----PFKREKSFEIVIMVLKDKFQVAVNGKHTLLYGHRIG--PEKIDTLGIYG 142
Query: 395 DVDVRDI 401
V++ I
Sbjct: 143 KVNIHSI 149
>pdb|3AP4|A Chain A, Crystal Structure Of The Galectin-8 N-Terminal
Carbohydrate Recognition Domain In Complex With Lactose
pdb|3AP4|B Chain B, Crystal Structure Of The Galectin-8 N-Terminal
Carbohydrate Recognition Domain In Complex With Lactose
pdb|3AP4|C Chain C, Crystal Structure Of The Galectin-8 N-Terminal
Carbohydrate Recognition Domain In Complex With Lactose
pdb|3AP4|D Chain D, Crystal Structure Of The Galectin-8 N-Terminal
Carbohydrate Recognition Domain In Complex With Lactose
pdb|3AP5|A Chain A, Crystal Structure Of The Galectin-8 N-Terminal
Carbohydrate Recognition Domain
pdb|3AP6|A Chain A, Crystal Structure Of The Galectin-8 N-Terminal
Carbohydrate Recognition Domain In Complex With Lactose
3'-Sulfate
pdb|3AP6|B Chain B, Crystal Structure Of The Galectin-8 N-Terminal
Carbohydrate Recognition Domain In Complex With Lactose
3'-Sulfate
pdb|3AP6|C Chain C, Crystal Structure Of The Galectin-8 N-Terminal
Carbohydrate Recognition Domain In Complex With Lactose
3'-Sulfate
pdb|3AP6|D Chain D, Crystal Structure Of The Galectin-8 N-Terminal
Carbohydrate Recognition Domain In Complex With Lactose
3'-Sulfate
pdb|3AP7|A Chain A, Crystal Structure Of The Galectin-8 N-Terminal
Carbohydrate Recognition Domain In Complex With Lactose
Sialic Acid
pdb|3APB|A Chain A, Crystal Structure Of The Galectin-8 N-Terminal
Carbohydrate Recognition Domain In Complex With Iodide
pdb|3APB|B Chain B, Crystal Structure Of The Galectin-8 N-Terminal
Carbohydrate Recognition Domain In Complex With Iodide
pdb|3AP9|A Chain A, Crystal Structure Of The Galectin-8 N-Terminal
Carbohydrate Recognition Domain In Complex With
Lacto-N-Fucopentaose Iii
Length = 154
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 335 EKVTTDWSSPFPFEERKLFVLTLRAGLEGYHVSVDGKHVTSFPYRTGFTLEDATGLTVSG 394
E++T D PF+ K F + + + + V+V+GKH + +R G E L + G
Sbjct: 89 EEITYDT----PFKREKSFEIVIMVLKDKFQVAVNGKHTLLYGHRIG--PEKIDTLGIYG 142
Query: 395 DVDVRDI 401
V++ I
Sbjct: 143 KVNIHSI 149
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,757,103
Number of Sequences: 62578
Number of extensions: 660093
Number of successful extensions: 1288
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1279
Number of HSP's gapped (non-prelim): 18
length of query: 530
length of database: 14,973,337
effective HSP length: 103
effective length of query: 427
effective length of database: 8,527,803
effective search space: 3641371881
effective search space used: 3641371881
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)