Query 009630
Match_columns 530
No_of_seqs 318 out of 1516
Neff 4.3
Searched_HMMs 46136
Date Thu Mar 28 15:26:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009630.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009630hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03133 beta-1,3-galactosyltr 100.0 1.8E-92 4E-97 770.2 33.3 365 139-529 104-482 (636)
2 smart00276 GLECT Galectin. Gal 100.0 2.8E-31 6.1E-36 237.7 16.4 126 193-403 2-127 (128)
3 PF00337 Gal-bind_lectin: Gala 100.0 4.5E-31 9.8E-36 235.6 14.2 133 191-403 1-133 (133)
4 cd00070 GLECT Galectin/galacto 100.0 1.4E-30 3.1E-35 232.3 15.0 126 192-402 2-127 (127)
5 KOG2287 Galactosyltransferases 99.9 6.5E-28 1.4E-32 249.4 12.7 182 344-528 7-193 (349)
6 KOG3587 Galectin, galactose-bi 99.9 4.5E-26 9.7E-31 209.3 15.3 137 190-405 4-140 (143)
7 PLN03193 beta-1,3-galactosyltr 99.9 1.6E-22 3.5E-27 212.4 10.2 129 383-529 105-243 (408)
8 PF01762 Galactosyl_T: Galacto 99.8 8.4E-19 1.8E-23 165.8 7.0 81 449-529 1-87 (195)
9 PTZ00210 UDP-GlcNAc-dependent 99.5 3.2E-14 6.8E-19 148.8 6.0 94 434-527 79-204 (382)
10 KOG2288 Galactosyltransferases 99.3 2E-12 4.3E-17 129.4 8.2 92 432-523 8-106 (274)
11 PF02434 Fringe: Fringe-like; 50.5 24 0.00052 35.7 4.7 27 436-462 7-34 (252)
12 PF07234 DUF1426: Protein of u 36.0 26 0.00056 31.8 2.1 21 28-48 19-39 (117)
13 PF06439 DUF1080: Domain of Un 29.2 1.2E+02 0.0027 27.8 5.5 37 344-380 121-157 (185)
14 PF13385 Laminin_G_3: Concanav 27.0 1.4E+02 0.0031 25.4 5.3 52 344-395 79-130 (157)
15 PF02210 Laminin_G_2: Laminin 24.5 4.1E+02 0.0088 22.2 7.5 59 344-412 48-107 (128)
16 KOG3982 Runt and related trans 20.9 92 0.002 34.2 3.3 29 329-370 185-222 (475)
No 1
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=1.8e-92 Score=770.22 Aligned_cols=365 Identities=35% Similarity=0.593 Sum_probs=330.9
Q ss_pred hhHHHHHHHHHhHHHHHHhhcCCCc-cc-----cccCCCCCCCCCCccc-ccCccccCCCeeeeeCCCCCCCcEEEEEEE
Q 009630 139 LHKAAKTAFEVGTKLWEELESGNIQ-ID-----TKKKENLSESCPHSII-LSGSEFLNNKNLMILPCGLTLGSHITIVGV 211 (530)
Q Consensus 139 l~~~a~~A~~~g~~~w~~~~~~~~~-~~-----~~~~~~~~~~Cp~sv~-~~~~~l~~~~~~~~LPcGL~~Gs~ItVvG~ 211 (530)
....+.+|++++..+|+.|.+.... .. .+......++||++|+ +++.++.+++|.+.|||||.+|++|||+|+
T Consensus 104 ~~~~~~~~~~~~~~aw~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~~~~~~~~~~~~~~~~~~iP~GL~~Gs~ItI~G~ 183 (636)
T PLN03133 104 VLPNGVEAIKEAGVAWESLMASVEEEKLGYTNESSLRKSKEKQCPYFLNKMNATELGDSGYKLKIPCGLTQGSSITIIGI 183 (636)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCchhhhhcccccccCCceEEecCCcCCCCCEEEEEEE
Confidence 3356778999999999998754221 11 1112334579999999 789999899999999999999999999999
Q ss_pred cCCCccccCcccccccCCcccccccEEEEeccCccCCCCCCCeeEEEccccCCCC-CCCCeEEEeCcc-CCcccceeecC
Q 009630 212 PRAAHAEKNPKISVLNDGQETMVSQFMMELRGLKTVEGEEPPRILHFNPRLKGDF-SGQPVIEQNTCY-RMQWGTALRCQ 289 (530)
Q Consensus 212 p~~~~~~~~p~~~~~~~g~~~~v~qF~VeL~g~~~~~~e~~~iiLHfNPR~~gd~-s~~~vIv~NT~~-~gqWG~eeRc~ 289 (530)
|+..+ +||+|||+|+...+++++||||||||||+||| +++|+||||||+ +|+||.||||+
T Consensus 184 p~~~~------------------~~F~InL~g~~~~g~~~~~iaLHfNpRf~gd~~t~~~vIV~NT~~~~~~WG~EERc~ 245 (636)
T PLN03133 184 PDGLL------------------GNFRIDLTGEPLPGEPDPPIILHYNVRLLGDKITEDPVIVQNTWTAAHDWGEEERCP 245 (636)
T ss_pred eCCCC------------------CeEEEEEeecCcCCCCCCCEEEEEcCccCCCccccCCEEEeCCCcCCCcccHhhhcC
Confidence 99877 99999999986655567899999999999996 579999999998 99999999999
Q ss_pred CCCCCCCccccccchhccccccCCCCCchhhhhhhhhhhhcC-CCCcccccCCCCCCCCCCCCeEEEEEEEecccEEEEe
Q 009630 290 GRPSRPDEETVDGKLKCEKWIHDDENHPEQAKNKWWLLKRLG-SDTEKVTTDWSSPFPFEERKLFVLTLRAGLEGYHVSV 368 (530)
Q Consensus 290 g~~S~~d~~~vdg~~~ce~w~~~~~~~~~~~~~~~~l~~r~~-g~~~~~~~~w~~~fPF~eG~~F~ltI~ag~egfhV~V 368 (530)
||+|++| ++||||+|||||+++|+..+++++++||+| |+| |+.+++..+| +|||++|++|++||+|+.|||||+|
T Consensus 246 ~~~~~~~-~~vd~~~~c~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~fPF~~G~~F~lti~~g~egf~v~V 321 (636)
T PLN03133 246 SPDPDKN-KKVDDLDQCNKMVGRDDKRVLSTSLHSNGS-RRSPMSQEATKARR--YFPFKQGYLSVATLRVGTEGIQMTV 321 (636)
T ss_pred CCCcccc-ccccchhhhhhhhccccccccccccccccc-cccccccccccccc--CCCCCCCCcEEEEEEecCCEEEEEE
Confidence 9999998 789999999999999999999999999999 888 6688999999 9999999999999999999999999
Q ss_pred CCeEeEeecCCCCCCccCceeeeecCCcceeEEEEcccCCCCCCCCCcccccccccccCCCCC-CCCccEEEEEEcCCCC
Q 009630 369 DGKHVTSFPYRTGFTLEDATGLTVSGDVDVRDIFAASLPTTHPSSGPQTHLEMSSRWQAPPLP-EGPVELFIGILSAGNH 447 (530)
Q Consensus 369 nG~hv~sF~yR~g~~le~it~L~V~GDv~v~sV~a~slPts~Psf~~~~~le~~~~wkapp~~-~~~v~LLI~V~Sap~n 447 (530)
||+|+++|+||.++.++.|+.|.|+|||+|+||.|.++|++||+ .|+.+++.|++||++ +.+++|||+|+|+|+|
T Consensus 322 nG~H~tsF~yR~~lep~~V~~l~V~GDv~l~SV~a~~~p~~~~~----~~~~d~e~lkAppL~~~~~~~LlI~V~Sap~n 397 (636)
T PLN03133 322 DGKHITSFAYRETLEPWLVSEVRISGDLKLISVLASGLPTSEDS----EHVIDLEALKSPPLSPKKPLDLFIGVFSTANN 397 (636)
T ss_pred CCeEEEeeeCCCCCCccceeEEEEeCcEEEEEEEeeCCCCCCch----hcccchHHhcCCCCCCCCceEEEEEEeCCccc
Confidence 99999999999987888999999999999999999999999987 688999999999988 4679999999999999
Q ss_pred hHHHHHHHHhhccCceeecCcEEEEEEeeccCChHHHHHHHHHHHHcCCEEEecCcccCCCcHHHHHHHhhhccce---e
Q 009630 448 FAERMAVRKSWMQHKFVQSSNVVARFFVALHARKEVNVELKKEAEFFGDIVLVPYLDNYDLVVLKTVAICEYGVSC---Q 524 (530)
Q Consensus 448 FerR~aIRkTWg~~~~v~~~~V~~~F~VG~s~~~e~n~~LkkEAe~yGDIVq~dF~DsY~NLTLKTla~leWa~~n---q 524 (530)
|++|+|||+|||+....+++.++++|+||.+.+..+|..|++|+++||||||+||+|+|+|||+||+++|.|+.+. +
T Consensus 398 f~rR~AIR~TWg~~~~~~~~~v~~rFvVG~s~n~~l~~~L~~Ea~~ygDIIq~dF~DsY~NLTlKtl~~~~wa~~c~~ak 477 (636)
T PLN03133 398 FKRRMAVRRTWMQYDAVRSGAVAVRFFVGLHKNQMVNEELWNEARTYGDIQLMPFVDYYSLITWKTLAICIFGTEVVSAK 477 (636)
T ss_pred HHHHHHHHHhhccccccCCCceEEEEEEecCCcHHHHHHHHHHHHHcCCeEEEeeechhhhhHHHHHHHHHHHHhCCCce
Confidence 9999999999999766666779999999999999999999999999999999999999999999999999999864 7
Q ss_pred EEEEc
Q 009630 525 IIIIT 529 (530)
Q Consensus 525 ~i~~~ 529 (530)
||+-|
T Consensus 478 FilK~ 482 (636)
T PLN03133 478 YVMKT 482 (636)
T ss_pred EEEEc
Confidence 88754
No 2
>smart00276 GLECT Galectin. Galectin - galactose-binding lectin
Probab=99.97 E-value=2.8e-31 Score=237.73 Aligned_cols=126 Identities=30% Similarity=0.515 Sum_probs=117.8
Q ss_pred eeeeCCCCCCCcEEEEEEEcCCCccccCcccccccCCcccccccEEEEeccCccCCCCCCCeeEEEccccCCCCCCCCeE
Q 009630 193 LMILPCGLTLGSHITIVGVPRAAHAEKNPKISVLNDGQETMVSQFMMELRGLKTVEGEEPPRILHFNPRLKGDFSGQPVI 272 (530)
Q Consensus 193 ~~~LPcGL~~Gs~ItVvG~p~~~~~~~~p~~~~~~~g~~~~v~qF~VeL~g~~~~~~e~~~iiLHfNPR~~gd~s~~~vI 272 (530)
...||+||.+|+.|+|.|+|...+ ++|.|||+++. ++++|||||||.+ ++|
T Consensus 2 ~~~lp~~l~~G~~i~i~G~~~~~~------------------~~F~inl~~~~------~di~lH~n~rf~~-----~~i 52 (128)
T smart00276 2 TLPIPGGLKPGQTLTVRGIVLPDA------------------KRFSINLLTGG------DDIALHFNPRFNE-----NKI 52 (128)
T ss_pred cccCCCCCCCCCEEEEEEEECCCC------------------CEEEEEeecCC------CCEEEEEeccCCC-----CEE
Confidence 467999999999999999999988 89999999853 5899999999987 699
Q ss_pred EEeCccCCcccceeecCCCCCCCCccccccchhccccccCCCCCchhhhhhhhhhhhcCCCCcccccCCCCCCCCCCCCe
Q 009630 273 EQNTCYRMQWGTALRCQGRPSRPDEETVDGKLKCEKWIHDDENHPEQAKNKWWLLKRLGSDTEKVTTDWSSPFPFEERKL 352 (530)
Q Consensus 273 v~NT~~~gqWG~eeRc~g~~S~~d~~~vdg~~~ce~w~~~~~~~~~~~~~~~~l~~r~~g~~~~~~~~w~~~fPF~eG~~ 352 (530)
|+||+.+|.||.||| .+.|||++|++
T Consensus 53 V~Ns~~~g~Wg~Eer------------------------------------------------------~~~~Pf~~g~~ 78 (128)
T smart00276 53 VCNSKLNGSWGSEER------------------------------------------------------EGGFPFQPGQP 78 (128)
T ss_pred EEeCccCCccchheE------------------------------------------------------cCCCCCCCCCE
Confidence 999999999999999 23799999999
Q ss_pred EEEEEEEecccEEEEeCCeEeEeecCCCCCCccCceeeeecCCcceeEEEE
Q 009630 353 FVLTLRAGLEGYHVSVDGKHVTSFPYRTGFTLEDATGLTVSGDVDVRDIFA 403 (530)
Q Consensus 353 F~ltI~ag~egfhV~VnG~hv~sF~yR~g~~le~it~L~V~GDv~v~sV~a 403 (530)
|+|+|.++.++|+|+|||+|+++|+||+ ++++|+.|.|.||++|++|..
T Consensus 79 F~l~i~~~~~~f~i~vng~~~~~f~~R~--~~~~i~~l~v~Gdv~l~~v~~ 127 (128)
T smart00276 79 FDLTIIVQPDHFQIFVNGVHITTFPHRL--PLESIDYLSINGDVQLTSVSF 127 (128)
T ss_pred EEEEEEEcCCEEEEEECCEeEEEecCCC--CcccEeEEEEeCCEEEEEEEE
Confidence 9999999999999999999999999999 799999999999999999975
No 3
>PF00337 Gal-bind_lectin: Galactoside-binding lectin; InterPro: IPR001079 Galectins (also known as galaptins or S-lectin) are a family of proteins defined by having at least one characteristic carbohydrate recognition domain (CRD) with an affinity for beta-galactosides and sharing certain sequence elements. Members of the galectins family are found in mammals, birds, amphibians, fish, nematodes, sponges, and some fungi. Galectins are known to carry out intra- and extracellular functions through glycoconjugate-mediated recogntion. From the cytosol they may be secreted by non-classical pathways, but they may also be targeted to the nucleus or specific sub-cytosolic sites. Within the same peptide chain some galectins have a CRD with only a few additional amino acids, whereas others have two CRDs joined by a link peptide, and one (galectin-3) has one CRD joined to a different type of domain [, ]. The galectin carbohydrate recognition domain (CRD) is a beta-sandwich of about 135 amino acid. The two sheets are slightly bent with 6 strands forming the concave side and 5 strands forming the convex side. The concave side forms a groove in which carbohydrate is bound, and which is long enough to hold about a linear tetrasaccharide [, ].; GO: 0005529 sugar binding; PDB: 2WSU_B 2WT0_A 2WT1_A 2WT2_B 2WSV_A 1HLC_A 2ZGQ_A 3M3Q_B 1WW5_C 3M3E_A ....
Probab=99.97 E-value=4.5e-31 Score=235.64 Aligned_cols=133 Identities=33% Similarity=0.549 Sum_probs=120.9
Q ss_pred CeeeeeCCCCCCCcEEEEEEEcCCCccccCcccccccCCcccccccEEEEeccCccCCCCCCCeeEEEccccCCCCCCCC
Q 009630 191 KNLMILPCGLTLGSHITIVGVPRAAHAEKNPKISVLNDGQETMVSQFMMELRGLKTVEGEEPPRILHFNPRLKGDFSGQP 270 (530)
Q Consensus 191 ~~~~~LPcGL~~Gs~ItVvG~p~~~~~~~~p~~~~~~~g~~~~v~qF~VeL~g~~~~~~e~~~iiLHfNPR~~gd~s~~~ 270 (530)
||++.||+||.+|+.|+|.|++...+ ++|.|||+++. ..+.++++|||||||.+ ++
T Consensus 1 pf~~~l~~~l~~G~~i~i~G~~~~~~------------------~~f~inl~~~~--~~~~~~i~lH~~~rf~~----~~ 56 (133)
T PF00337_consen 1 PFTARLPGGLSPGDSIIIRGTVPPDA------------------KRFSINLQTGP--NDPDDDIALHFNPRFDE----QN 56 (133)
T ss_dssp SEEEEETTEEETTEEEEEEEEEBTTS------------------SBEEEEEEES---STTTTEEEEEEEEECTT----EE
T ss_pred CceEEcCCCCCCCcEEEEEEEECCCC------------------CEEEEEecCCC--cCCCCCEEEEEEEEeCC----Cc
Confidence 58899999999999999999999888 99999999975 23678999999999987 26
Q ss_pred eEEEeCccCCcccceeecCCCCCCCCccccccchhccccccCCCCCchhhhhhhhhhhhcCCCCcccccCCCCCCCCCCC
Q 009630 271 VIEQNTCYRMQWGTALRCQGRPSRPDEETVDGKLKCEKWIHDDENHPEQAKNKWWLLKRLGSDTEKVTTDWSSPFPFEER 350 (530)
Q Consensus 271 vIv~NT~~~gqWG~eeRc~g~~S~~d~~~vdg~~~ce~w~~~~~~~~~~~~~~~~l~~r~~g~~~~~~~~w~~~fPF~eG 350 (530)
+||+||+.+|.||.|||+ ..|||.+|
T Consensus 57 ~iv~Ns~~~g~Wg~Ee~~------------------------------------------------------~~~pf~~g 82 (133)
T PF00337_consen 57 VIVRNSRINGKWGQEERE------------------------------------------------------SPFPFQPG 82 (133)
T ss_dssp EEEEEEEETTEE-SEEEE------------------------------------------------------SSTSSTTT
T ss_pred eEEEeceECCEeccceee------------------------------------------------------eeeeecCC
Confidence 999999999999999992 27999999
Q ss_pred CeEEEEEEEecccEEEEeCCeEeEeecCCCCCCccCceeeeecCCcceeEEEE
Q 009630 351 KLFVLTLRAGLEGYHVSVDGKHVTSFPYRTGFTLEDATGLTVSGDVDVRDIFA 403 (530)
Q Consensus 351 ~~F~ltI~ag~egfhV~VnG~hv~sF~yR~g~~le~it~L~V~GDv~v~sV~a 403 (530)
++|+|+|.+..++|+|+|||+|+++|+||+ ++++|+.|.|.|||+|++|.+
T Consensus 83 ~~F~i~I~~~~~~f~I~vng~~~~~F~~R~--~~~~i~~l~i~Gdv~i~~v~~ 133 (133)
T PF00337_consen 83 QPFEIRIRVEEDGFKIYVNGKHFCSFPHRL--PLSSIDYLQIQGDVQIYSVEF 133 (133)
T ss_dssp SEEEEEEEEESSEEEEEETTEEEEEEE-SS--CGGGEEEEEEEESEEEEEEEE
T ss_pred ceEEEEEEEecCeeEEEECCeEEEEeeCcC--CHHHcCEEEEECCEEEEEEEC
Confidence 999999999999999999999999999998 789999999999999999974
No 4
>cd00070 GLECT Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may be involved in differentiation, cell-cell interaction and cellular regulation.
Probab=99.97 E-value=1.4e-30 Score=232.31 Aligned_cols=126 Identities=33% Similarity=0.535 Sum_probs=117.4
Q ss_pred eeeeeCCCCCCCcEEEEEEEcCCCccccCcccccccCCcccccccEEEEeccCccCCCCCCCeeEEEccccCCCCCCCCe
Q 009630 192 NLMILPCGLTLGSHITIVGVPRAAHAEKNPKISVLNDGQETMVSQFMMELRGLKTVEGEEPPRILHFNPRLKGDFSGQPV 271 (530)
Q Consensus 192 ~~~~LPcGL~~Gs~ItVvG~p~~~~~~~~p~~~~~~~g~~~~v~qF~VeL~g~~~~~~e~~~iiLHfNPR~~gd~s~~~v 271 (530)
+...|||+|.+|+.|+|.|+|..++ ++|.|||+++. .+++|||||||.+ ++
T Consensus 2 ~~~~l~~~l~~G~~i~i~G~~~~~~------------------~~f~Inl~~~~------~~i~lH~n~rf~~-----~~ 52 (127)
T cd00070 2 YKLPLPGGLKPGSTLTVKGRVLPNA------------------KRFSINLGTGS------SDIALHFNPRFDE-----NV 52 (127)
T ss_pred cccccCCCCcCCCEEEEEEEECCCC------------------CEEEEEEecCC------CCEEEEEeeeCCC-----CE
Confidence 5577999999999999999999988 99999999853 2799999999987 79
Q ss_pred EEEeCccCCcccceeecCCCCCCCCccccccchhccccccCCCCCchhhhhhhhhhhhcCCCCcccccCCCCCCCCCCCC
Q 009630 272 IEQNTCYRMQWGTALRCQGRPSRPDEETVDGKLKCEKWIHDDENHPEQAKNKWWLLKRLGSDTEKVTTDWSSPFPFEERK 351 (530)
Q Consensus 272 Iv~NT~~~gqWG~eeRc~g~~S~~d~~~vdg~~~ce~w~~~~~~~~~~~~~~~~l~~r~~g~~~~~~~~w~~~fPF~eG~ 351 (530)
||+||+.+|.||.|||| ..|||.+|+
T Consensus 53 IV~Ns~~~g~Wg~Eer~------------------------------------------------------~~~pf~~g~ 78 (127)
T cd00070 53 IVRNSFLNGNWGPEERS------------------------------------------------------GGFPFQPGQ 78 (127)
T ss_pred EEEcCCCCCEecHhhcc------------------------------------------------------CCCCCCCCC
Confidence 99999999999999993 269999999
Q ss_pred eEEEEEEEecccEEEEeCCeEeEeecCCCCCCccCceeeeecCCcceeEEE
Q 009630 352 LFVLTLRAGLEGYHVSVDGKHVTSFPYRTGFTLEDATGLTVSGDVDVRDIF 402 (530)
Q Consensus 352 ~F~ltI~ag~egfhV~VnG~hv~sF~yR~g~~le~it~L~V~GDv~v~sV~ 402 (530)
.|+|+|.++.++|+|+|||+|+++|+||. ++++|+.|.|.||+.+++|.
T Consensus 79 ~F~l~i~~~~~~f~i~vng~~~~~F~~R~--~~~~i~~l~v~Gdv~i~~v~ 127 (127)
T cd00070 79 PFELTILVEEDKFQIFVNGQHFFSFPHRL--PLESIDYLSINGDVSLTSVE 127 (127)
T ss_pred eEEEEEEEcCCEEEEEECCEeEEEecCcC--ChhhEEEEEEeCCEEEEEeC
Confidence 99999999999999999999999999999 78999999999999999873
No 5
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=99.95 E-value=6.5e-28 Score=249.37 Aligned_cols=182 Identities=33% Similarity=0.416 Sum_probs=160.3
Q ss_pred CCCCCCCCeEEEEEEEecccEEEEeCCeEeEeecCCCCCCccCceeeeecCCcceeEEEEcccCCCCCCCCCcccccccc
Q 009630 344 PFPFEERKLFVLTLRAGLEGYHVSVDGKHVTSFPYRTGFTLEDATGLTVSGDVDVRDIFAASLPTTHPSSGPQTHLEMSS 423 (530)
Q Consensus 344 ~fPF~eG~~F~ltI~ag~egfhV~VnG~hv~sF~yR~g~~le~it~L~V~GDv~v~sV~a~slPts~Psf~~~~~le~~~ 423 (530)
.+|+..+..|+.++.+..+++++.+++++..+|.++..+..+..++...++.+..+..+..+++.+++.+....++...+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p 86 (349)
T KOG2287|consen 7 LFPLLPGKRFVSTLRLVLEGLQISEPLRLLTSFLLLPTIKNCLATGWAFSTPLLLTGDFGSSFPLSFADFQKFFYLLYLP 86 (349)
T ss_pred cccccccchhhhhhhhhheeeeeccccccCCcccccCCCcccccccccccCCccccCcccccccccchhhccChhhhcCC
Confidence 79999999999999999999999999999999999998888999999999999888888888888887765554443333
Q ss_pred cccCCCCCCCCccEEEEEEcCCCChHHHHHHHHhhccCceeecCcEEEEEEeeccCCh-HHHHHHHHHHHHcCCEEEecC
Q 009630 424 RWQAPPLPEGPVELFIGILSAGNHFAERMAVRKSWMQHKFVQSSNVVARFFVALHARK-EVNVELKKEAEFFGDIVLVPY 502 (530)
Q Consensus 424 ~wkapp~~~~~v~LLI~V~Sap~nFerR~aIRkTWg~~~~v~~~~V~~~F~VG~s~~~-e~n~~LkkEAe~yGDIVq~dF 502 (530)
.++.+. .+++|+++|+|+++||++|+|||+|||+...+.+++++++|++|.+.+. +++.+|.+|++.||||||+||
T Consensus 87 ~~~~~~---~~~~lLl~V~S~~~~farR~aiR~TW~~~~~v~~~~v~~~FLvG~~~~~~~~~~~l~~Ea~~ygDIi~~df 163 (349)
T KOG2287|consen 87 EICDPD---RPPELLLLVKSAPDNFARRNAIRKTWGNENNVRGGRVRVLFLVGLPSNEDKLNKLLADEARLYGDIIQVDF 163 (349)
T ss_pred hhhcCC---CCceEEEEEecCCCCHHHHHHHHHHhcCccccCCCcEEEEEEecCCCcHHHHHHHHHHHHHHhCCEEEEec
Confidence 333321 2489999999999999999999999999988888999999999999876 578899999999999999999
Q ss_pred cccCCCcHHHHHHHhhhccc----eeEEEE
Q 009630 503 LDNYDLVVLKTVAICEYGVS----CQIIII 528 (530)
Q Consensus 503 ~DsY~NLTLKTla~leWa~~----nq~i~~ 528 (530)
+|+|+|||+||+++|+|++. -++|+=
T Consensus 164 ~Dty~nltlKtl~~l~w~~~~cp~akfi~K 193 (349)
T KOG2287|consen 164 EDTYFNLTLKTLAILLWGVSKCPDAKFILK 193 (349)
T ss_pred ccchhchHHHHHHHHHHHHhcCCcceEEEe
Confidence 99999999999999999995 577764
No 6
>KOG3587 consensus Galectin, galactose-binding lectin [Extracellular structures]
Probab=99.94 E-value=4.5e-26 Score=209.29 Aligned_cols=137 Identities=26% Similarity=0.443 Sum_probs=123.0
Q ss_pred CCeeeeeCCCCCCCcEEEEEEEcCCCccccCcccccccCCcccccccEEEEeccCccCCCCCCCeeEEEccccCCCCCCC
Q 009630 190 NKNLMILPCGLTLGSHITIVGVPRAAHAEKNPKISVLNDGQETMVSQFMMELRGLKTVEGEEPPRILHFNPRLKGDFSGQ 269 (530)
Q Consensus 190 ~~~~~~LPcGL~~Gs~ItVvG~p~~~~~~~~p~~~~~~~g~~~~v~qF~VeL~g~~~~~~e~~~iiLHfNPR~~gd~s~~ 269 (530)
.++...++++|.+|+.+++.|.+..+.+ .+|.++++.+-..+. +.+++|||||||.+
T Consensus 4 ~p~~~~~~~~l~~g~~~~~~g~~~~~~~-----------------~~~~~~~~~~~~~~~-~~dia~Hfnprf~~----- 60 (143)
T KOG3587|consen 4 VPFPVPIPSGLPPGSQVTIKGLVLYGIP-----------------KRFAVNLRFGTNLDS-DSDIALHFNPRFDE----- 60 (143)
T ss_pred cccccccccCcCCCcEEEEEEEEcccCC-----------------CcceeeeEeecccCC-CCcEEEEEeccCCC-----
Confidence 3566778999999999999999998763 678888887766654 67799999999998
Q ss_pred CeEEEeCccCCcccceeecCCCCCCCCccccccchhccccccCCCCCchhhhhhhhhhhhcCCCCcccccCCCCCCCCCC
Q 009630 270 PVIEQNTCYRMQWGTALRCQGRPSRPDEETVDGKLKCEKWIHDDENHPEQAKNKWWLLKRLGSDTEKVTTDWSSPFPFEE 349 (530)
Q Consensus 270 ~vIv~NT~~~gqWG~eeRc~g~~S~~d~~~vdg~~~ce~w~~~~~~~~~~~~~~~~l~~r~~g~~~~~~~~w~~~fPF~e 349 (530)
..|||||+.+|.||.||| +..+||+.
T Consensus 61 ~~VVrNs~~~g~Wg~eE~------------------------------------------------------~~~~PF~~ 86 (143)
T KOG3587|consen 61 KGVVRNSLINGEWGLEER------------------------------------------------------EGGNPFQP 86 (143)
T ss_pred CeEEEecccCCccCchhh------------------------------------------------------cCCCCCCC
Confidence 469999999999999998 34799999
Q ss_pred CCeEEEEEEEecccEEEEeCCeEeEeecCCCCCCccCceeeeecCCcceeEEEEcc
Q 009630 350 RKLFVLTLRAGLEGYHVSVDGKHVTSFPYRTGFTLEDATGLTVSGDVDVRDIFAAS 405 (530)
Q Consensus 350 G~~F~ltI~ag~egfhV~VnG~hv~sF~yR~g~~le~it~L~V~GDv~v~sV~a~s 405 (530)
|+.|.|+|.++.+.|+|.|||.|+++|+||+ +++.+..|.|.|||+|.+|....
T Consensus 87 g~~F~l~I~~~~~~~~I~VNg~~f~~y~HR~--p~~~v~~l~i~Gdv~i~~i~~~~ 140 (143)
T KOG3587|consen 87 GQPFDLTILVEEDKFQIFVNGVHFADYPHRI--PPSSVQTLQINGDVQITSIEFSN 140 (143)
T ss_pred CCeEEEEEEEccCeEEEEECCEEEEeecCCC--CChheeEEEEeeeEEEEEEEEEc
Confidence 9999999999999999999999999999999 89999999999999999998764
No 7
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=99.87 E-value=1.6e-22 Score=212.44 Aligned_cols=129 Identities=16% Similarity=0.221 Sum_probs=105.2
Q ss_pred CccCceeeeecCCcceeEEEEcccCCCCCCCCCcccccccccccCCCCCCCCccEEEEEEcCCCChHHHHHHHHhhccCc
Q 009630 383 TLEDATGLTVSGDVDVRDIFAASLPTTHPSSGPQTHLEMSSRWQAPPLPEGPVELFIGILSAGNHFAERMAVRKSWMQHK 462 (530)
Q Consensus 383 ~le~it~L~V~GDv~v~sV~a~slPts~Psf~~~~~le~~~~wkapp~~~~~v~LLI~V~Sap~nFerR~aIRkTWg~~~ 462 (530)
.+|.++..+ +.++.++++|.++++- .| +...+.+++|+|+|+|+++||+||++||+|||+..
T Consensus 105 e~el~~~~~------~~~~~~~~~~~~~~~~----------~~--~~~~~~~~~LvIgI~Sap~~~~RR~AIR~TWg~~~ 166 (408)
T PLN03193 105 EMELAAARA------AQESILNGSPISEDLK----------KT--QSSGKRRYLMVVGINTAFSSRKRRDSVRATWMPQG 166 (408)
T ss_pred hHHHHHHHh------hhhhhccCCCcccccc----------cc--CCCCcceEEEEEEEeCCCCCHHHHHHHHHHHcCCc
Confidence 455555554 6677788888887652 12 22234569999999999999999999999999864
Q ss_pred ee-----ecCcEEEEEEeeccC--ChHHHHHHHHHHHHcCCEEEecCcccCCCcHHHHHHHhhhccce---eEEEEc
Q 009630 463 FV-----QSSNVVARFFVALHA--RKEVNVELKKEAEFFGDIVLVPYLDNYDLVVLKTVAICEYGVSC---QIIIIT 529 (530)
Q Consensus 463 ~v-----~~~~V~~~F~VG~s~--~~e~n~~LkkEAe~yGDIVq~dF~DsY~NLTLKTla~leWa~~n---q~i~~~ 529 (530)
.. ....|+++|+||.+. ++.++.+|++|+++||||||+||+|+|+|||+||+++|+|+.++ +|++=|
T Consensus 167 ~~~~kle~~~gv~vrFVIG~s~~~~~~ldr~Le~Ea~~ygDIL~lDfvDsY~NLT~KTl~~f~wA~~~~dAkF~mK~ 243 (408)
T PLN03193 167 EKRKKLEEEKGIIIRFVIGHSATSGGILDRAIEAEDRKHGDFLRLDHVEGYLELSAKTKTYFATAVAMWDADFYVKV 243 (408)
T ss_pred ccccccccCCcEEEEEEeecCCCcchHHHHHHHHHHHHhCCEEEEecccccccchHHHHHHHHHHHHcCCCeEEEEc
Confidence 22 235689999999987 56899999999999999999999999999999999999999997 777643
No 8
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=99.76 E-value=8.4e-19 Score=165.78 Aligned_cols=81 Identities=25% Similarity=0.438 Sum_probs=73.2
Q ss_pred HHHHHHHHhhccCceeecCcEEEEEEeeccC--ChHHHHHHHHHHHHcCCEEEecCcccCCCcHHHHHHHhhhccce---
Q 009630 449 AERMAVRKSWMQHKFVQSSNVVARFFVALHA--RKEVNVELKKEAEFFGDIVLVPYLDNYDLVVLKTVAICEYGVSC--- 523 (530)
Q Consensus 449 erR~aIRkTWg~~~~v~~~~V~~~F~VG~s~--~~e~n~~LkkEAe~yGDIVq~dF~DsY~NLTLKTla~leWa~~n--- 523 (530)
++|++||+|||+.......+++++|+||.+. +.+++..|++|+++||||||+||.|+|+|+|+||+++|+|+.++
T Consensus 1 ~rR~~IR~TW~~~~~~~~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~~D~y~nlt~K~~~~~~w~~~~c~~ 80 (195)
T PF01762_consen 1 ERRQAIRETWGNQRNFKGVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDFVDSYRNLTLKTLAGLKWASKHCPN 80 (195)
T ss_pred ChHHHHHHHHhcccccCCCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeecccccchhhHHHHHHHHHHHhhCCc
Confidence 5899999999998766678999999999998 67788999999999999999999999999999999999999874
Q ss_pred -eEEEEc
Q 009630 524 -QIIIIT 529 (530)
Q Consensus 524 -q~i~~~ 529 (530)
++|+.+
T Consensus 81 ~~~v~k~ 87 (195)
T PF01762_consen 81 AKYVLKV 87 (195)
T ss_pred hhheeec
Confidence 566543
No 9
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional
Probab=99.48 E-value=3.2e-14 Score=148.78 Aligned_cols=94 Identities=21% Similarity=0.240 Sum_probs=85.5
Q ss_pred CccEEEEEEcCCCC--hHHHHHHHHhhccCceee------cCcEEEEEEeeccCCh--HHHHHHHHHHHHcCCEEEecC-
Q 009630 434 PVELFIGILSAGNH--FAERMAVRKSWMQHKFVQ------SSNVVARFFVALHARK--EVNVELKKEAEFFGDIVLVPY- 502 (530)
Q Consensus 434 ~v~LLI~V~Sap~n--FerR~aIRkTWg~~~~v~------~~~V~~~F~VG~s~~~--e~n~~LkkEAe~yGDIVq~dF- 502 (530)
+-.++++|.|..++ |.||++.|+||++...+. .+.+.++|++|.|++. +++.+|++||++|||||++||
T Consensus 79 ~~lv~~Gi~S~d~~~r~~rR~lqr~t~w~y~~va~~~n~ftg~~lv~y~l~~H~~~~~~~~~~L~eEA~~~~DIVilpf~ 158 (382)
T PTZ00210 79 RFLAVLGIPSVDNSERSRRRDLQRQTCWKYSGVATRSNNFSGSLLPLYLLAPHQSNSYLISHSLKEEAARTHDIITLPTN 158 (382)
T ss_pred CceEEEeccCCCchHHHHHHHHHHhhhhcchhhhhhccCCchhhhhhhhhccCCccchhhhHHHHHHHHHhCCEEEEecc
Confidence 57788999999999 999999999999987665 5677889999999998 899999999999999999999
Q ss_pred -----------------cccCCCcHHHHHHHhhhccce----eEEE
Q 009630 503 -----------------LDNYDLVVLKTVAICEYGVSC----QIII 527 (530)
Q Consensus 503 -----------------~DsY~NLTLKTla~leWa~~n----q~i~ 527 (530)
.|+|.|+|+||+++|+|+.+. +||+
T Consensus 159 d~~~tTnKkiG~~g~WG~e~e~~mT~KT~l~~~wA~~~cP~a~YIm 204 (382)
T PTZ00210 159 DVSPSTRKKIGENGNWGIEAEVAMSRKTYLWLRFALHMFPNVSYIV 204 (382)
T ss_pred cCccccccccccCCcccchhhcchhHHHHHHHHHHHHhCCCCCeEE
Confidence 777789999999999999986 6665
No 10
>KOG2288 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=99.34 E-value=2e-12 Score=129.36 Aligned_cols=92 Identities=26% Similarity=0.388 Sum_probs=82.4
Q ss_pred CCCccEEEEEEcCCCChHHHHHHHHhhccC-----ceeecCcEEEEEEeec-cCChHHHHHHHHHHHHcCCEEEec-Ccc
Q 009630 432 EGPVELFIGILSAGNHFAERMAVRKSWMQH-----KFVQSSNVVARFFVAL-HARKEVNVELKKEAEFFGDIVLVP-YLD 504 (530)
Q Consensus 432 ~~~v~LLI~V~Sap~nFerR~aIRkTWg~~-----~~v~~~~V~~~F~VG~-s~~~e~n~~LkkEAe~yGDIVq~d-F~D 504 (530)
...++++|+|.|++++-.||++||+|||.. +......+.++|+||. +...+...+|++|.++|+|.+++| ..|
T Consensus 8 ~~k~l~vigI~T~f~s~~RR~~vR~TWmp~~~~l~rle~e~gv~~RFvIG~~~~g~~~~r~ie~E~~~~~DfllLd~h~E 87 (274)
T KOG2288|consen 8 RRKVLLVIGINTAFSSRKRRDSVRQTWMPSGEGLKRLEEEKGVIIRFVIGTATLGASLDRALEEENAQHGDFLLLDRHEE 87 (274)
T ss_pred ccceEEEEEeecccchhhhHHHHHHhhcCCccchhhhccccceEEEEEeccCCccHHHHHHHHHHHHhcCCeEeechhHH
Confidence 346899999999999999999999999987 2234567899999999 566778899999999999999999 999
Q ss_pred cCCCcHHHHHHHhhhccce
Q 009630 505 NYDLVVLKTVAICEYGVSC 523 (530)
Q Consensus 505 sY~NLTLKTla~leWa~~n 523 (530)
.|.+|+.||++.|.||+++
T Consensus 88 ~Y~~Ls~Kt~~~f~~A~~~ 106 (274)
T KOG2288|consen 88 AYEELSAKTKAFFSAAVAH 106 (274)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999886
No 11
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=50.49 E-value=24 Score=35.73 Aligned_cols=27 Identities=15% Similarity=0.514 Sum_probs=20.2
Q ss_pred cEEEEEEcCCCCh-HHHHHHHHhhccCc
Q 009630 436 ELFIGILSAGNHF-AERMAVRKSWMQHK 462 (530)
Q Consensus 436 ~LLI~V~Sap~nF-erR~aIRkTWg~~~ 462 (530)
+++|+|+|++.+- .|=.+|++||++..
T Consensus 7 dI~i~V~T~~k~h~tR~~~I~~TW~~~~ 34 (252)
T PF02434_consen 7 DIFIAVKTTKKFHKTRAPAIKQTWAKRC 34 (252)
T ss_dssp GEEEEEE--GGGTTTTHHHHHHTGGGGS
T ss_pred cEEEEEEeCHHHHHHHHHHHHHHHHhhc
Confidence 6899999999665 55578999999864
No 12
>PF07234 DUF1426: Protein of unknown function (DUF1426); InterPro: IPR009871 This family consists of several Banana bunchy top virus proteins of around 120 residues in length. Q9IGU4 from SWISSPROT is annotated a movement protein whereas most other family members are hypothetical. The function of this family is unknown.
Probab=35.98 E-value=26 Score=31.80 Aligned_cols=21 Identities=33% Similarity=0.640 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHhhcccc
Q 009630 28 IQILIFIGVLYLIFLIGLQVP 48 (530)
Q Consensus 28 ~~~~~~~~~~y~~~~~~~~~p 48 (530)
.-|++|+-.+|.|+.++||+|
T Consensus 19 ~AIFiAItIlYILLalL~EvP 39 (117)
T PF07234_consen 19 GAIFIAITILYILLALLFEVP 39 (117)
T ss_pred HHHHHHHHHHHHHHHHHHhhH
Confidence 357788889999999999999
No 13
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=29.22 E-value=1.2e+02 Score=27.83 Aligned_cols=37 Identities=16% Similarity=0.143 Sum_probs=31.1
Q ss_pred CCCCCCCCeEEEEEEEecccEEEEeCCeEeEeecCCC
Q 009630 344 PFPFEERKLFVLTLRAGLEGYHVSVDGKHVTSFPYRT 380 (530)
Q Consensus 344 ~fPF~eG~~F~ltI~ag~egfhV~VnG~hv~sF~yR~ 380 (530)
...+.+|+=..++|.|..+.+.|.|||+.+.+|.-..
T Consensus 121 ~~~~~~~~W~~~~I~~~g~~i~v~vnG~~v~~~~d~~ 157 (185)
T PF06439_consen 121 NVAIPPGEWNTVRIVVKGNRITVWVNGKPVADFTDPS 157 (185)
T ss_dssp --S--TTSEEEEEEEEETTEEEEEETTEEEEEEETTS
T ss_pred cccCCCCceEEEEEEEECCEEEEEECCEEEEEEEcCC
Confidence 5678899999999999999999999999999988776
No 14
>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A ....
Probab=27.04 E-value=1.4e+02 Score=25.43 Aligned_cols=52 Identities=19% Similarity=0.200 Sum_probs=34.9
Q ss_pred CCCCCCCCeEEEEEEEecccEEEEeCCeEeEeecCCCCCCccCceeeeecCC
Q 009630 344 PFPFEERKLFVLTLRAGLEGYHVSVDGKHVTSFPYRTGFTLEDATGLTVSGD 395 (530)
Q Consensus 344 ~fPF~eG~~F~ltI~ag~egfhV~VnG~hv~sF~yR~g~~le~it~L~V~GD 395 (530)
..++..++-..|++........++|||+.+.+.+.-..........+.|.++
T Consensus 79 ~~~~~~~~W~~l~~~~~~~~~~lyvnG~~~~~~~~~~~~~~~~~~~~~iG~~ 130 (157)
T PF13385_consen 79 DSNLPDNKWHHLALTYDGSTVTLYVNGELVGSSTIPSNISLNSNGPLFIGGS 130 (157)
T ss_dssp BS---TT-EEEEEEEEETTEEEEEETTEEETTCTEESSSSTTSCCEEEESS-
T ss_pred CcccCCCCEEEEEEEEECCeEEEEECCEEEEeEeccCCcCCCCcceEEEeec
Confidence 5677789999999999999999999999997766655323344555555543
No 15
>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012679 from INTERPRO).; PDB: 3POY_A 3QCW_B 3R05_B 3ASI_A 3MW4_B 3MW3_A 1QU0_D 1DYK_A 1OKQ_A 3SH4_A ....
Probab=24.47 E-value=4.1e+02 Score=22.24 Aligned_cols=59 Identities=14% Similarity=0.275 Sum_probs=44.6
Q ss_pred CCCCCCCCeEEEEEEEecccEEEEeCCeEeEeecCCCCCCccCceeeeecCCcce-eEEEEcccCCCCCC
Q 009630 344 PFPFEERKLFVLTLRAGLEGYHVSVDGKHVTSFPYRTGFTLEDATGLTVSGDVDV-RDIFAASLPTTHPS 412 (530)
Q Consensus 344 ~fPF~eG~~F~ltI~ag~egfhV~VnG~hv~sF~yR~g~~le~it~L~V~GDv~v-~sV~a~slPts~Ps 412 (530)
+.++..|+--.+.|........+.||+........-.... ..++. ..+++++.|.....
T Consensus 48 ~~~~~dg~wh~v~i~~~~~~~~l~Vd~~~~~~~~~~~~~~----------~~~~~~~~l~iGg~~~~~~~ 107 (128)
T PF02210_consen 48 NSNLNDGQWHKVSISRDGNRVTLTVDGQSVSSESLPSSSS----------DSLDPDGSLYIGGLPESNQP 107 (128)
T ss_dssp SSSSTSSSEEEEEEEEETTEEEEEETTSEEEEEESSSTTH----------HCBESEEEEEESSTTTTCTC
T ss_pred CccccccceeEEEEEEeeeeEEEEecCccceEEeccccce----------ecccCCCCEEEecccCcccc
Confidence 7889999999999999999999999999998877766321 11222 24677888877543
No 16
>KOG3982 consensus Runt and related transcription factors [Transcription]
Probab=20.86 E-value=92 Score=34.23 Aligned_cols=29 Identities=31% Similarity=0.400 Sum_probs=23.4
Q ss_pred hcCCCCcccccCCCCCCCCCCCCeEEEEEEEec---------ccEEEEeCC
Q 009630 329 RLGSDTEKVTTDWSSPFPFEERKLFVLTLRAGL---------EGYHVSVDG 370 (530)
Q Consensus 329 r~~g~~~~~~~~w~~~fPF~eG~~F~ltI~ag~---------egfhV~VnG 370 (530)
||.||.- .|+.|.|||.+-. .-++|+|||
T Consensus 185 RFVGRSG-------------RGKsFtLTIti~TnP~qvATy~kaIKVTVDG 222 (475)
T KOG3982|consen 185 RFVGRSG-------------RGKSFTLTITIFTNPPQVATYHKAIKVTVDG 222 (475)
T ss_pred eeecccC-------------CCcceEEEEEEecCCcceeeeeceEEEeccC
Confidence 8888874 6999999998754 456789998
Done!