Query 009632
Match_columns 530
No_of_seqs 220 out of 1967
Neff 11.2
Searched_HMMs 46136
Date Thu Mar 28 15:28:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009632.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009632hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0211 Protein phosphatase 2A 100.0 1.6E-45 3.4E-50 362.0 36.1 524 7-530 80-612 (759)
2 KOG0211 Protein phosphatase 2A 100.0 3.2E-35 6.9E-40 289.6 35.5 489 18-506 168-666 (759)
3 KOG2171 Karyopherin (importin) 100.0 6.9E-29 1.5E-33 246.6 46.8 505 10-523 5-615 (1075)
4 KOG2023 Nuclear transport rece 100.0 1.1E-29 2.4E-34 236.4 31.0 508 5-519 9-746 (885)
5 KOG2171 Karyopherin (importin) 100.0 3.3E-26 7.1E-31 227.7 42.0 470 13-483 83-614 (1075)
6 KOG0213 Splicing factor 3b, su 99.9 2.9E-23 6.3E-28 196.0 38.5 513 10-528 364-1050(1172)
7 KOG1241 Karyopherin (importin) 99.9 5.8E-23 1.3E-27 195.0 37.5 511 11-523 131-732 (859)
8 KOG2023 Nuclear transport rece 99.9 6.6E-24 1.4E-28 198.2 28.2 459 47-520 13-523 (885)
9 COG5181 HSH155 U2 snRNP splice 99.9 1.4E-21 3.1E-26 181.2 35.2 506 11-529 170-898 (975)
10 KOG0213 Splicing factor 3b, su 99.9 2.3E-20 4.9E-25 176.7 37.7 497 18-528 485-1092(1172)
11 KOG1241 Karyopherin (importin) 99.9 4.8E-20 1E-24 175.5 37.1 476 46-523 88-647 (859)
12 PLN03200 cellulose synthase-in 99.9 3.5E-19 7.7E-24 191.8 42.5 494 10-510 190-770 (2102)
13 KOG1242 Protein containing ada 99.9 6.4E-19 1.4E-23 165.9 35.5 503 20-529 28-550 (569)
14 KOG1824 TATA-binding protein-i 99.9 1.7E-18 3.7E-23 168.3 37.5 512 13-526 9-623 (1233)
15 PF01602 Adaptin_N: Adaptin N 99.9 3.7E-19 7.9E-24 180.2 35.0 485 21-528 18-509 (526)
16 KOG1242 Protein containing ada 99.9 3.1E-18 6.7E-23 161.3 37.2 457 50-511 19-490 (569)
17 PLN03200 cellulose synthase-in 99.9 4E-18 8.8E-23 183.8 41.7 515 10-529 100-750 (2102)
18 PF01602 Adaptin_N: Adaptin N 99.9 2.7E-19 5.8E-24 181.2 31.5 472 9-502 42-522 (526)
19 COG5215 KAP95 Karyopherin (imp 99.9 5.6E-17 1.2E-21 149.9 41.8 495 26-522 151-731 (858)
20 KOG0212 Uncharacterized conser 99.9 3.1E-18 6.8E-23 157.8 32.3 426 92-519 6-459 (675)
21 PRK13800 putative oxidoreducta 99.9 2.2E-19 4.8E-24 189.2 27.6 275 164-501 622-896 (897)
22 KOG1824 TATA-binding protein-i 99.8 2.9E-17 6.3E-22 159.9 37.6 506 11-526 176-746 (1233)
23 PRK09687 putative lyase; Provi 99.8 2.2E-18 4.8E-23 155.3 21.8 250 167-500 27-278 (280)
24 PRK09687 putative lyase; Provi 99.8 2.9E-18 6.3E-23 154.5 21.4 241 242-527 24-266 (280)
25 PRK13800 putative oxidoreducta 99.8 2.5E-17 5.4E-22 173.8 25.9 274 127-462 623-896 (897)
26 PTZ00429 beta-adaptin; Provisi 99.8 1.4E-14 2.9E-19 146.2 43.7 469 10-508 33-511 (746)
27 COG5215 KAP95 Karyopherin (imp 99.8 1.1E-14 2.4E-19 135.0 37.1 422 57-508 15-483 (858)
28 COG5181 HSH155 U2 snRNP splice 99.8 5.6E-15 1.2E-19 137.9 35.3 481 16-510 288-918 (975)
29 KOG0915 Uncharacterized conser 99.8 3.2E-16 7E-21 160.0 29.5 463 56-521 827-1363(1702)
30 PTZ00429 beta-adaptin; Provisi 99.8 4.3E-14 9.3E-19 142.6 44.3 472 1-502 60-544 (746)
31 KOG1240 Protein kinase contain 99.8 3E-17 6.4E-22 163.8 19.8 283 242-525 423-746 (1431)
32 KOG0212 Uncharacterized conser 99.8 5.8E-15 1.3E-19 136.6 33.0 441 56-503 9-479 (675)
33 KOG0915 Uncharacterized conser 99.8 8.7E-15 1.9E-19 149.8 36.3 489 13-507 822-1430(1702)
34 KOG1240 Protein kinase contain 99.7 4.4E-16 9.6E-21 155.6 20.3 271 176-446 436-745 (1431)
35 KOG0166 Karyopherin (importin) 99.7 7.7E-14 1.7E-18 131.3 28.2 344 161-504 107-486 (514)
36 KOG0166 Karyopherin (importin) 99.7 1.1E-13 2.4E-18 130.2 26.5 341 165-505 68-437 (514)
37 KOG1060 Vesicle coat complex A 99.6 2.5E-12 5.5E-17 123.9 30.3 459 12-495 38-562 (968)
38 PF10508 Proteasom_PSMB: Prote 99.6 1.3E-10 2.8E-15 114.9 39.1 359 143-504 56-462 (503)
39 KOG4224 Armadillo repeat prote 99.5 1.1E-12 2.4E-17 115.4 17.6 376 48-427 86-494 (550)
40 KOG1943 Beta-tubulin folding c 99.5 5.5E-10 1.2E-14 112.0 37.2 422 84-507 339-840 (1133)
41 COG5240 SEC21 Vesicle coat com 99.5 3.6E-10 7.8E-15 105.6 31.5 466 13-503 69-554 (898)
42 PF10508 Proteasom_PSMB: Prote 99.5 2.7E-10 5.9E-15 112.6 32.4 370 97-467 49-464 (503)
43 KOG4224 Armadillo repeat prote 99.5 4.6E-12 1E-16 111.6 16.5 343 163-506 85-448 (550)
44 KOG1943 Beta-tubulin folding c 99.4 2.1E-09 4.6E-14 107.9 35.1 484 10-505 342-882 (1133)
45 KOG1060 Vesicle coat complex A 99.4 5E-10 1.1E-14 108.4 28.7 330 161-507 69-499 (968)
46 KOG2259 Uncharacterized conser 99.4 2.1E-10 4.6E-15 108.8 25.7 392 56-469 88-515 (823)
47 KOG1061 Vesicle coat complex A 99.4 7.7E-10 1.7E-14 107.7 27.1 474 7-503 11-527 (734)
48 COG5064 SRP1 Karyopherin (impo 99.3 2.4E-10 5.3E-15 100.0 19.4 339 164-503 115-495 (526)
49 KOG1020 Sister chromatid cohes 99.3 1E-07 2.2E-12 99.3 39.6 453 11-467 818-1407(1692)
50 COG1413 FOG: HEAT repeat [Ener 99.3 2.2E-09 4.8E-14 101.9 26.5 277 163-501 43-332 (335)
51 COG5064 SRP1 Karyopherin (impo 99.3 2.5E-10 5.3E-15 100.0 16.2 339 166-504 74-443 (526)
52 KOG1062 Vesicle coat complex A 99.3 5.2E-08 1.1E-12 95.3 32.8 427 56-500 116-577 (866)
53 KOG1991 Nuclear transport rece 99.3 5.3E-07 1.1E-11 90.5 40.0 148 375-523 389-553 (1010)
54 KOG1061 Vesicle coat complex A 99.2 1.7E-08 3.6E-13 98.6 26.4 406 85-508 48-457 (734)
55 PF12348 CLASP_N: CLASP N term 99.2 1.7E-09 3.7E-14 96.4 18.5 196 85-314 6-211 (228)
56 KOG2259 Uncharacterized conser 99.2 2.4E-08 5.3E-13 95.2 26.2 213 280-501 198-472 (823)
57 KOG1248 Uncharacterized conser 99.2 2E-06 4.3E-11 88.3 40.7 473 33-511 374-905 (1176)
58 COG1413 FOG: HEAT repeat [Ener 99.2 2.5E-08 5.5E-13 94.6 25.9 274 128-462 46-332 (335)
59 COG5240 SEC21 Vesicle coat com 99.2 1.8E-07 3.9E-12 88.0 29.7 450 56-529 74-541 (898)
60 KOG1059 Vesicle coat complex A 99.2 1.3E-06 2.8E-11 84.6 36.1 316 143-468 124-493 (877)
61 KOG1078 Vesicle coat complex C 99.2 1.3E-07 2.8E-12 92.3 29.4 457 13-503 68-531 (865)
62 PF12348 CLASP_N: CLASP N term 99.1 4.5E-09 9.7E-14 93.7 18.1 186 282-470 9-211 (228)
63 TIGR02270 conserved hypothetic 99.1 2E-08 4.3E-13 95.4 23.0 241 164-465 55-296 (410)
64 TIGR02270 conserved hypothetic 99.1 4.3E-08 9.4E-13 93.1 23.9 231 135-425 65-295 (410)
65 KOG1243 Protein kinase [Genera 99.1 9.5E-10 2.1E-14 106.1 12.1 255 251-507 264-518 (690)
66 KOG1243 Protein kinase [Genera 99.1 4E-09 8.7E-14 101.9 15.1 254 172-427 263-516 (690)
67 KOG1077 Vesicle coat complex A 99.1 7.7E-06 1.7E-10 79.2 36.5 437 45-501 108-584 (938)
68 KOG1062 Vesicle coat complex A 99.1 5.2E-06 1.1E-10 81.7 35.8 362 138-507 117-547 (866)
69 KOG1059 Vesicle coat complex A 99.0 2.5E-06 5.4E-11 82.8 31.5 394 81-502 139-575 (877)
70 KOG1991 Nuclear transport rece 99.0 2.4E-05 5.3E-10 79.0 37.7 415 19-445 14-553 (1010)
71 KOG1248 Uncharacterized conser 99.0 5.7E-05 1.2E-09 78.0 40.8 443 20-472 402-905 (1176)
72 COG5096 Vesicle coat complex, 99.0 3.5E-06 7.5E-11 84.5 31.2 238 162-409 54-296 (757)
73 COG5096 Vesicle coat complex, 98.9 3.6E-05 7.7E-10 77.4 37.6 460 18-506 28-521 (757)
74 KOG4535 HEAT and armadillo rep 98.9 3.1E-06 6.7E-11 78.3 26.9 461 17-505 4-604 (728)
75 KOG1020 Sister chromatid cohes 98.9 3.4E-05 7.5E-10 81.2 36.5 132 396-527 1120-1277(1692)
76 KOG1820 Microtubule-associated 98.9 5.7E-07 1.2E-11 91.6 23.5 192 316-511 250-450 (815)
77 KOG1078 Vesicle coat complex C 98.9 1.4E-05 2.9E-10 78.7 31.5 471 29-529 40-518 (865)
78 PF12460 MMS19_C: RNAPII trans 98.9 3.7E-05 8.1E-10 74.8 34.3 201 265-467 171-396 (415)
79 KOG1992 Nuclear export recepto 98.8 9.6E-06 2.1E-10 80.1 29.0 437 48-505 6-528 (960)
80 KOG1058 Vesicle coat complex C 98.8 2.3E-05 5E-10 76.7 30.1 434 12-507 23-466 (948)
81 KOG1820 Microtubule-associated 98.8 2.7E-06 5.9E-11 86.8 25.1 336 126-471 64-449 (815)
82 PF12460 MMS19_C: RNAPII trans 98.8 1.7E-05 3.6E-10 77.2 29.9 288 99-388 56-395 (415)
83 KOG0413 Uncharacterized conser 98.8 9.4E-06 2E-10 81.2 27.6 464 50-520 474-1089(1529)
84 KOG2137 Protein kinase [Signal 98.7 1.2E-06 2.7E-11 85.5 19.0 231 254-487 286-520 (700)
85 PF05804 KAP: Kinesin-associat 98.7 0.00023 5E-09 72.3 35.4 356 144-505 268-650 (708)
86 KOG1058 Vesicle coat complex C 98.7 9.9E-05 2.1E-09 72.4 30.1 304 205-528 102-410 (948)
87 KOG1293 Proteins containing ar 98.7 0.00039 8.3E-09 67.6 33.6 136 369-504 388-533 (678)
88 PF12755 Vac14_Fab1_bd: Vacuol 98.7 2.5E-07 5.4E-12 68.3 9.5 70 159-229 23-94 (97)
89 KOG1077 Vesicle coat complex A 98.7 0.00054 1.2E-08 67.0 34.8 435 11-462 113-584 (938)
90 PF12755 Vac14_Fab1_bd: Vacuol 98.6 6.7E-07 1.5E-11 66.0 11.3 90 413-503 2-95 (97)
91 KOG2062 26S proteasome regulat 98.6 3.3E-05 7.2E-10 75.5 25.4 291 176-497 392-689 (929)
92 KOG2274 Predicted importin 9 [ 98.6 0.00084 1.8E-08 67.6 37.3 236 291-528 461-722 (1005)
93 KOG2137 Protein kinase [Signal 98.6 3.5E-06 7.6E-11 82.4 18.9 231 292-525 285-519 (700)
94 KOG4535 HEAT and armadillo rep 98.6 5.7E-05 1.2E-09 70.2 24.2 271 256-526 270-585 (728)
95 KOG4413 26S proteasome regulat 98.5 0.00056 1.2E-08 60.7 27.7 166 106-271 63-244 (524)
96 KOG2025 Chromosome condensatio 98.5 0.00022 4.8E-09 69.6 27.2 224 104-345 60-291 (892)
97 KOG2274 Predicted importin 9 [ 98.5 0.0018 3.9E-08 65.4 39.4 151 368-523 501-668 (1005)
98 KOG0413 Uncharacterized conser 98.5 0.0019 4.1E-08 65.5 33.8 183 126-308 473-684 (1529)
99 PF12717 Cnd1: non-SMC mitotic 98.5 1.6E-05 3.4E-10 67.3 17.4 112 215-329 1-112 (178)
100 cd00020 ARM Armadillo/beta-cat 98.5 1.1E-06 2.4E-11 69.5 9.9 108 396-503 6-119 (120)
101 PF05918 API5: Apoptosis inhib 98.5 0.00011 2.4E-09 71.7 24.4 281 138-427 35-346 (556)
102 KOG2062 26S proteasome regulat 98.5 5.5E-05 1.2E-09 74.0 21.8 282 145-455 399-684 (929)
103 PF13646 HEAT_2: HEAT repeats; 98.5 2E-06 4.3E-11 63.6 9.6 86 399-500 1-88 (88)
104 KOG1992 Nuclear export recepto 98.5 0.0024 5.2E-08 63.8 34.6 417 6-429 2-530 (960)
105 PF04826 Arm_2: Armadillo-like 98.4 2.9E-05 6.4E-10 68.9 18.1 180 252-431 24-210 (254)
106 KOG2025 Chromosome condensatio 98.4 0.00011 2.5E-09 71.6 23.1 166 204-384 87-256 (892)
107 PF13001 Ecm29: Proteasome sta 98.4 0.00013 2.7E-09 72.6 24.4 411 87-505 25-489 (501)
108 KOG0567 HEAT repeat-containing 98.4 7.4E-05 1.6E-09 64.2 19.2 91 397-503 187-279 (289)
109 PF13646 HEAT_2: HEAT repeats; 98.4 2E-06 4.4E-11 63.6 9.0 85 361-461 2-88 (88)
110 PF05804 KAP: Kinesin-associat 98.4 0.0015 3.2E-08 66.6 31.7 370 95-472 259-655 (708)
111 KOG2032 Uncharacterized conser 98.4 0.00032 7E-09 65.8 24.7 258 240-504 257-531 (533)
112 PF12717 Cnd1: non-SMC mitotic 98.4 4E-05 8.7E-10 64.8 17.4 109 333-444 2-110 (178)
113 KOG0168 Putative ubiquitin fus 98.4 0.001 2.2E-08 66.6 27.8 202 89-290 171-390 (1051)
114 PF05918 API5: Apoptosis inhib 98.3 0.00058 1.3E-08 66.8 25.5 266 167-446 27-316 (556)
115 PF04826 Arm_2: Armadillo-like 98.3 0.00011 2.4E-09 65.3 19.1 212 282-493 14-251 (254)
116 KOG4653 Uncharacterized conser 98.3 9.9E-05 2.1E-09 73.6 20.4 214 247-467 733-966 (982)
117 KOG0567 HEAT repeat-containing 98.3 1.5E-05 3.2E-10 68.3 12.6 110 19-152 15-127 (289)
118 cd00020 ARM Armadillo/beta-cat 98.3 3.5E-06 7.6E-11 66.6 8.4 107 163-269 7-119 (120)
119 KOG2032 Uncharacterized conser 98.3 0.0014 3.1E-08 61.6 26.0 167 138-304 230-411 (533)
120 KOG4653 Uncharacterized conser 98.3 0.00011 2.4E-09 73.3 19.3 183 163-351 727-921 (982)
121 PF05004 IFRD: Interferon-rela 98.2 0.0012 2.5E-08 61.1 24.1 184 285-468 48-260 (309)
122 KOG1293 Proteins containing ar 98.2 0.0071 1.5E-07 59.1 29.7 401 128-530 54-520 (678)
123 KOG2956 CLIP-associating prote 98.2 0.00035 7.5E-09 65.1 19.8 189 323-515 291-488 (516)
124 KOG2956 CLIP-associating prote 98.2 0.00014 3.1E-09 67.6 17.3 196 124-327 286-491 (516)
125 COG5218 YCG1 Chromosome conden 98.2 0.0035 7.5E-08 60.3 26.0 192 179-384 63-263 (885)
126 COG5656 SXM1 Importin, protein 98.1 0.011 2.4E-07 58.7 33.8 129 395-523 406-548 (970)
127 KOG1967 DNA repair/transcripti 98.1 0.012 2.6E-07 59.9 30.2 151 353-503 862-1023(1030)
128 KOG0168 Putative ubiquitin fus 98.1 0.0018 3.9E-08 64.9 23.6 186 10-196 168-368 (1051)
129 PF13513 HEAT_EZ: HEAT-like re 98.0 8.2E-06 1.8E-10 53.8 4.5 53 411-463 1-55 (55)
130 PF05004 IFRD: Interferon-rela 98.0 0.0019 4.1E-08 59.7 21.2 199 328-526 52-285 (309)
131 PF14500 MMS19_N: Dos2-interac 98.0 0.0025 5.3E-08 57.2 21.1 226 91-320 4-248 (262)
132 KOG4413 26S proteasome regulat 98.0 0.011 2.3E-07 52.8 27.0 243 66-311 62-335 (524)
133 PF13513 HEAT_EZ: HEAT-like re 98.0 1.1E-05 2.4E-10 53.2 4.2 52 177-228 1-54 (55)
134 KOG0414 Chromosome condensatio 97.9 0.04 8.6E-07 57.9 37.7 132 392-529 914-1050(1251)
135 KOG0414 Chromosome condensatio 97.9 0.012 2.7E-07 61.4 26.7 148 351-504 912-1064(1251)
136 COG5116 RPN2 26S proteasome re 97.9 0.00093 2E-08 63.8 17.4 281 145-451 393-677 (926)
137 KOG1949 Uncharacterized conser 97.9 0.0035 7.6E-08 61.6 21.1 187 160-346 126-329 (1005)
138 KOG1949 Uncharacterized conser 97.9 0.017 3.6E-07 57.0 25.2 143 282-424 176-329 (1005)
139 COG5116 RPN2 26S proteasome re 97.9 0.00064 1.4E-08 64.9 15.4 297 9-332 370-675 (926)
140 KOG1851 Uncharacterized conser 97.9 0.067 1.5E-06 58.0 32.0 133 394-527 1523-1663(1710)
141 PF02985 HEAT: HEAT repeat; I 97.9 2.7E-05 6E-10 43.9 3.9 30 164-193 1-30 (31)
142 PLN03076 ARF guanine nucleotid 97.8 0.032 6.8E-07 63.1 30.2 291 179-470 1108-1494(1780)
143 KOG1525 Sister chromatid cohes 97.8 0.0051 1.1E-07 66.4 22.9 302 83-388 42-406 (1266)
144 PF02985 HEAT: HEAT repeat; I 97.8 3.9E-05 8.4E-10 43.3 4.1 29 437-465 1-29 (31)
145 KOG1822 Uncharacterized conser 97.8 0.089 1.9E-06 58.2 32.7 120 409-528 1254-1412(2067)
146 KOG1525 Sister chromatid cohes 97.8 0.017 3.7E-07 62.6 26.6 322 134-466 59-406 (1266)
147 PF13001 Ecm29: Proteasome sta 97.7 0.0065 1.4E-07 60.6 20.9 221 202-426 237-488 (501)
148 PF14500 MMS19_N: Dos2-interac 97.7 0.017 3.7E-07 51.9 21.4 223 209-436 6-247 (262)
149 KOG1967 DNA repair/transcripti 97.7 0.00075 1.6E-08 68.1 13.7 142 162-303 866-1018(1030)
150 PF12719 Cnd3: Nuclear condens 97.7 0.014 3E-07 54.2 21.3 173 166-368 30-207 (298)
151 PF12719 Cnd3: Nuclear condens 97.7 0.01 2.3E-07 55.0 20.1 156 287-447 34-208 (298)
152 KOG1822 Uncharacterized conser 97.6 0.084 1.8E-06 58.4 27.2 171 144-314 803-993 (2067)
153 COG5218 YCG1 Chromosome conden 97.4 0.13 2.8E-06 50.0 33.0 167 11-190 93-264 (885)
154 PF08506 Cse1: Cse1; InterPro 97.4 0.03 6.5E-07 53.2 19.9 126 371-499 224-370 (370)
155 KOG1517 Guanine nucleotide bin 97.4 0.0057 1.2E-07 62.9 15.3 184 122-311 473-673 (1387)
156 PF01347 Vitellogenin_N: Lipop 97.4 0.018 4E-07 59.8 20.0 219 253-499 376-617 (618)
157 PF12530 DUF3730: Protein of u 97.4 0.033 7.1E-07 49.4 18.4 166 94-267 9-186 (234)
158 smart00638 LPD_N Lipoprotein N 97.4 0.058 1.3E-06 55.5 22.8 151 331-499 409-573 (574)
159 cd00256 VATPase_H VATPase_H, r 97.3 0.19 4E-06 48.4 26.2 195 105-309 53-258 (429)
160 PF01347 Vitellogenin_N: Lipop 97.3 0.056 1.2E-06 56.2 22.0 120 215-345 448-586 (618)
161 KOG2933 Uncharacterized conser 97.3 0.013 2.9E-07 52.0 14.1 163 362-528 92-262 (334)
162 KOG2933 Uncharacterized conser 97.2 0.0086 1.9E-07 53.2 12.4 173 282-459 90-271 (334)
163 COG5656 SXM1 Importin, protein 97.2 0.33 7E-06 48.9 33.7 380 145-525 390-827 (970)
164 KOG1517 Guanine nucleotide bin 97.2 0.14 3E-06 53.3 21.9 224 242-468 473-735 (1387)
165 KOG2021 Nuclear mRNA export fa 97.2 0.34 7.3E-06 48.8 40.5 486 10-528 4-590 (980)
166 PLN03076 ARF guanine nucleotid 97.2 0.088 1.9E-06 59.7 22.5 268 84-351 1135-1492(1780)
167 cd00256 VATPase_H VATPase_H, r 97.1 0.29 6.2E-06 47.2 26.7 68 437-504 354-425 (429)
168 PF10363 DUF2435: Protein of u 97.1 0.0065 1.4E-07 44.4 9.1 82 165-251 5-87 (92)
169 COG5098 Chromosome condensatio 97.1 0.36 7.9E-06 48.1 34.4 129 395-529 890-1023(1128)
170 PF08506 Cse1: Cse1; InterPro 97.1 0.13 2.7E-06 49.0 19.8 140 294-460 225-370 (370)
171 PF10363 DUF2435: Protein of u 97.0 0.011 2.4E-07 43.2 9.7 84 400-488 6-90 (92)
172 smart00638 LPD_N Lipoprotein N 96.9 0.054 1.2E-06 55.7 17.7 134 359-502 394-543 (574)
173 KOG0392 SNF2 family DNA-depend 96.9 0.019 4.2E-07 60.5 13.8 147 87-233 78-239 (1549)
174 KOG0392 SNF2 family DNA-depend 96.8 0.053 1.2E-06 57.3 16.1 225 242-467 78-327 (1549)
175 PF11864 DUF3384: Domain of un 96.8 0.6 1.3E-05 46.4 31.8 260 239-502 174-464 (464)
176 PF11865 DUF3385: Domain of un 96.7 0.056 1.2E-06 44.6 12.7 71 396-466 85-158 (160)
177 PF12530 DUF3730: Protein of u 96.6 0.45 9.8E-06 42.3 21.0 192 171-371 9-216 (234)
178 PF11864 DUF3384: Domain of un 96.6 0.92 2E-05 45.1 29.9 275 23-308 4-329 (464)
179 KOG2021 Nuclear mRNA export fa 96.6 1 2.3E-05 45.5 37.5 455 60-521 206-783 (980)
180 COG5234 CIN1 Beta-tubulin fold 96.5 1 2.2E-05 45.1 28.6 68 392-464 686-757 (993)
181 PF13251 DUF4042: Domain of un 96.5 0.061 1.3E-06 45.0 11.7 127 89-233 43-176 (182)
182 KOG2011 Sister chromatid cohes 96.5 0.52 1.1E-05 50.0 20.7 128 290-422 297-431 (1048)
183 PF13251 DUF4042: Domain of un 96.5 0.084 1.8E-06 44.2 12.3 19 178-196 1-19 (182)
184 PF01603 B56: Protein phosphat 96.4 1.1 2.4E-05 43.6 22.2 251 250-504 99-370 (409)
185 PF03378 CAS_CSE1: CAS/CSE pro 96.3 0.76 1.7E-05 44.9 19.4 193 160-354 68-278 (435)
186 KOG0946 ER-Golgi vesicle-tethe 96.3 1.6 3.4E-05 44.5 36.8 70 5-74 18-90 (970)
187 cd08050 TAF6 TATA Binding Prot 96.1 0.14 3E-06 48.3 13.2 132 365-503 185-339 (343)
188 KOG2213 Apoptosis inhibitor 5/ 96.0 1.3 2.8E-05 41.2 17.6 67 141-212 40-106 (460)
189 PF10274 ParcG: Parkin co-regu 95.9 0.36 7.8E-06 40.2 12.8 114 396-509 37-169 (183)
190 KOG2011 Sister chromatid cohes 95.6 3.2 6.9E-05 44.4 21.3 132 329-463 297-433 (1048)
191 KOG2160 Armadillo/beta-catenin 95.6 1.9 4.1E-05 39.9 19.1 176 330-505 94-283 (342)
192 PF07571 DUF1546: Protein of u 95.6 0.048 1E-06 40.0 6.1 71 446-520 16-90 (92)
193 KOG2160 Armadillo/beta-catenin 95.6 0.62 1.3E-05 42.9 14.3 131 141-271 99-241 (342)
194 KOG1851 Uncharacterized conser 95.6 5.1 0.00011 44.5 32.9 156 316-472 1523-1685(1710)
195 PF11865 DUF3385: Domain of un 95.5 0.22 4.7E-06 41.1 10.4 73 238-310 83-158 (160)
196 PF05536 Neurochondrin: Neuroc 95.5 3.3 7.2E-05 41.9 33.0 153 242-395 99-269 (543)
197 KOG2022 Nuclear transport rece 95.5 3.8 8.2E-05 42.5 33.6 363 141-508 440-871 (982)
198 PF12074 DUF3554: Domain of un 95.5 1.4 3.1E-05 41.8 17.3 56 253-309 35-90 (339)
199 PF10274 ParcG: Parkin co-regu 95.4 0.57 1.2E-05 39.1 12.4 115 356-470 36-169 (183)
200 PF11701 UNC45-central: Myosin 95.3 0.14 3E-06 42.2 8.7 129 97-226 16-154 (157)
201 PF12054 DUF3535: Domain of un 95.2 3.5 7.7E-05 40.5 20.0 74 62-135 102-178 (441)
202 PF08713 DNA_alkylation: DNA a 95.2 1.2 2.5E-05 39.1 14.8 131 126-270 52-184 (213)
203 PF08167 RIX1: rRNA processing 95.0 1.2 2.7E-05 37.0 13.5 124 396-521 24-162 (165)
204 PF12074 DUF3554: Domain of un 94.9 1.3 2.9E-05 42.0 15.5 55 138-192 36-90 (339)
205 PF01603 B56: Protein phosphat 94.9 4.2 9.1E-05 39.7 21.4 251 172-426 99-370 (409)
206 cd08050 TAF6 TATA Binding Prot 94.9 0.4 8.6E-06 45.3 11.4 138 164-308 179-339 (343)
207 PF14868 DUF4487: Domain of un 94.8 5 0.00011 40.4 23.9 88 419-507 463-555 (559)
208 KOG2549 Transcription initiati 94.8 2 4.3E-05 42.0 15.7 128 369-503 218-369 (576)
209 KOG0889 Histone acetyltransfer 94.7 3.9 8.5E-05 49.2 20.3 153 162-314 983-1160(3550)
210 KOG2149 Uncharacterized conser 94.7 0.91 2E-05 42.5 12.8 114 360-473 60-178 (393)
211 PF08713 DNA_alkylation: DNA a 94.7 1.9 4E-05 37.8 14.8 134 201-349 50-185 (213)
212 KOG2005 26S proteasome regulat 94.7 1.2 2.5E-05 44.5 14.0 219 9-234 452-707 (878)
213 KOG0889 Histone acetyltransfer 94.7 14 0.00031 44.9 30.0 152 85-236 983-1160(3550)
214 KOG2081 Nuclear transport regu 94.6 5 0.00011 39.5 33.8 177 324-506 296-497 (559)
215 PF03378 CAS_CSE1: CAS/CSE pro 94.6 5 0.00011 39.3 20.5 217 215-433 43-279 (435)
216 KOG2022 Nuclear transport rece 94.5 7 0.00015 40.8 34.1 344 122-469 459-871 (982)
217 PF08569 Mo25: Mo25-like; Int 94.5 4.2 9.2E-05 38.1 21.3 188 278-467 74-285 (335)
218 KOG2549 Transcription initiati 94.5 0.46 1E-05 46.1 10.8 139 164-309 208-370 (576)
219 PF10521 DUF2454: Protein of u 94.5 3.2 7E-05 38.1 16.1 40 353-392 114-153 (282)
220 PF08167 RIX1: rRNA processing 94.3 1.5 3.3E-05 36.5 12.5 107 126-234 26-146 (165)
221 KOG1993 Nuclear transport rece 94.3 7.3 0.00016 40.1 34.3 157 371-528 500-670 (978)
222 PF10521 DUF2454: Protein of u 94.3 1.4 3.1E-05 40.5 13.5 131 396-526 118-277 (282)
223 PF04118 Dopey_N: Dopey, N-ter 94.2 4.7 0.0001 37.3 21.3 178 281-464 55-253 (307)
224 KOG1848 Uncharacterized conser 94.0 7.6 0.00016 42.7 19.0 213 134-346 851-1130(1610)
225 PF12054 DUF3535: Domain of un 93.9 7.2 0.00016 38.4 22.4 71 333-405 290-362 (441)
226 PF14664 RICTOR_N: Rapamycin-i 93.9 6.3 0.00014 37.7 22.6 225 164-392 26-274 (371)
227 KOG0891 DNA-dependent protein 93.9 19 0.0004 43.1 30.3 246 13-267 485-760 (2341)
228 KOG1993 Nuclear transport rece 93.8 9.3 0.0002 39.4 26.6 207 47-255 487-713 (978)
229 KOG1048 Neural adherens juncti 93.7 7.4 0.00016 40.0 17.8 95 434-528 516-620 (717)
230 PF12830 Nipped-B_C: Sister ch 93.7 2.7 5.9E-05 35.8 13.2 72 395-468 6-77 (187)
231 PF12231 Rif1_N: Rap1-interact 93.6 7.3 0.00016 37.5 29.0 232 99-349 59-304 (372)
232 PF08161 NUC173: NUC173 domain 93.6 1.6 3.5E-05 37.4 11.5 118 91-209 5-124 (198)
233 KOG4524 Uncharacterized conser 93.5 12 0.00025 39.7 20.2 92 318-409 802-901 (1014)
234 KOG2973 Uncharacterized conser 93.5 5.8 0.00013 36.0 20.6 58 447-504 255-315 (353)
235 PF08389 Xpo1: Exportin 1-like 93.4 2.1 4.5E-05 34.8 11.9 47 450-498 100-147 (148)
236 PF12830 Nipped-B_C: Sister ch 93.3 1.7 3.6E-05 37.1 11.3 72 161-234 6-77 (187)
237 PF11698 V-ATPase_H_C: V-ATPas 93.3 0.61 1.3E-05 35.7 7.6 69 397-465 43-115 (119)
238 PF04118 Dopey_N: Dopey, N-ter 93.2 6.9 0.00015 36.2 20.3 165 217-386 70-253 (307)
239 PF03224 V-ATPase_H_N: V-ATPas 93.2 3.4 7.3E-05 38.7 14.2 140 249-388 113-270 (312)
240 KOG0891 DNA-dependent protein 93.2 24 0.00051 42.3 30.4 250 56-308 490-762 (2341)
241 cd03568 VHS_STAM VHS domain fa 92.9 3 6.5E-05 33.7 11.5 106 173-284 14-124 (144)
242 cd03567 VHS_GGA VHS domain fam 92.9 3.2 7E-05 33.2 11.5 98 406-509 14-121 (139)
243 PF08161 NUC173: NUC173 domain 92.9 2.6 5.6E-05 36.1 11.7 73 245-317 4-78 (198)
244 KOG0803 Predicted E3 ubiquitin 92.8 17 0.00037 40.7 20.1 112 373-485 201-330 (1312)
245 cd03568 VHS_STAM VHS domain fa 92.8 2.4 5.2E-05 34.2 10.8 98 406-509 13-115 (144)
246 KOG4500 Rho/Rac GTPase guanine 92.8 9.3 0.0002 36.4 29.2 148 357-504 314-475 (604)
247 PF11698 V-ATPase_H_C: V-ATPas 92.7 0.89 1.9E-05 34.9 7.7 68 437-504 44-115 (119)
248 PF07571 DUF1546: Protein of u 92.6 0.55 1.2E-05 34.5 6.4 69 369-441 17-89 (92)
249 KOG0803 Predicted E3 ubiquitin 92.6 6.2 0.00013 43.9 16.6 200 94-293 49-289 (1312)
250 KOG2149 Uncharacterized conser 92.5 1.5 3.4E-05 41.0 10.4 104 211-314 67-175 (393)
251 PF03224 V-ATPase_H_N: V-ATPas 92.3 9.9 0.00022 35.6 17.7 159 363-523 110-292 (312)
252 cd03569 VHS_Hrs_Vps27p VHS dom 92.2 5.2 0.00011 32.2 12.0 97 407-509 18-119 (142)
253 KOG2122 Beta-catenin-binding p 92.1 23 0.00049 39.7 19.2 135 331-465 450-601 (2195)
254 PF00514 Arm: Armadillo/beta-c 92.1 0.31 6.8E-06 29.3 3.8 30 474-503 11-40 (41)
255 COG5095 TAF6 Transcription ini 91.9 4.7 0.0001 36.2 12.1 130 367-503 207-358 (450)
256 PF11701 UNC45-central: Myosin 91.7 0.76 1.6E-05 37.8 6.9 128 138-265 18-154 (157)
257 PF12765 Cohesin_HEAT: HEAT re 91.7 0.41 8.9E-06 29.0 3.9 25 435-459 17-41 (42)
258 KOG1848 Uncharacterized conser 91.5 20 0.00043 39.7 18.1 216 95-310 851-1133(1610)
259 PF00514 Arm: Armadillo/beta-c 91.4 0.54 1.2E-05 28.3 4.3 29 436-464 12-40 (41)
260 KOG2081 Nuclear transport regu 91.3 16 0.00036 36.1 34.3 335 164-509 154-541 (559)
261 KOG2759 Vacuolar H+-ATPase V1 91.2 14 0.0003 35.2 29.4 69 436-504 366-438 (442)
262 PF00790 VHS: VHS domain; Int 91.1 5.7 0.00012 32.0 11.2 73 162-234 41-121 (140)
263 cd03561 VHS VHS domain family; 91.0 5.2 0.00011 31.8 10.8 96 407-508 14-116 (133)
264 KOG1048 Neural adherens juncti 90.9 21 0.00046 36.9 17.1 106 9-116 233-350 (717)
265 COG5101 CRM1 Importin beta-rel 90.9 19 0.00042 36.2 29.8 155 120-274 476-652 (1053)
266 PF14868 DUF4487: Domain of un 90.9 20 0.00043 36.3 25.8 86 343-429 465-555 (559)
267 PF08389 Xpo1: Exportin 1-like 90.8 7.5 0.00016 31.4 14.0 140 256-421 3-148 (148)
268 COG5537 IRR1 Cohesin [Cell div 90.7 19 0.00042 35.9 17.1 144 358-505 275-423 (740)
269 KOG0946 ER-Golgi vesicle-tethe 90.7 23 0.00049 36.8 31.5 311 174-503 34-398 (970)
270 PF08064 UME: UME (NUC010) dom 90.4 3 6.5E-05 31.7 8.6 62 175-238 27-90 (107)
271 PF12231 Rif1_N: Rap1-interact 90.3 18 0.00038 34.9 26.3 72 433-504 271-352 (372)
272 KOG4500 Rho/Rac GTPase guanine 90.3 17 0.00037 34.7 30.7 408 58-465 53-519 (604)
273 PF12765 Cohesin_HEAT: HEAT re 90.1 0.59 1.3E-05 28.3 3.6 23 202-224 18-40 (42)
274 PF12397 U3snoRNP10: U3 small 90.0 7.7 0.00017 30.2 12.0 71 395-467 4-76 (121)
275 KOG4524 Uncharacterized conser 90.0 29 0.00064 36.9 32.5 89 437-525 804-900 (1014)
276 cd03569 VHS_Hrs_Vps27p VHS dom 89.9 9 0.00019 30.9 11.8 109 173-287 18-131 (142)
277 PF08064 UME: UME (NUC010) dom 89.9 6.2 0.00013 30.0 9.9 61 448-510 27-89 (107)
278 KOG2973 Uncharacterized conser 89.7 16 0.00034 33.3 18.5 101 167-270 7-111 (353)
279 PF05536 Neurochondrin: Neuroc 89.7 26 0.00055 35.7 32.9 226 10-236 6-266 (543)
280 KOG2122 Beta-catenin-binding p 89.6 35 0.00075 38.4 17.9 300 48-347 235-600 (2195)
281 KOG2213 Apoptosis inhibitor 5/ 89.6 18 0.0004 34.0 19.5 68 256-329 39-106 (460)
282 cd03561 VHS VHS domain family; 89.5 9.3 0.0002 30.4 11.5 97 173-275 14-117 (133)
283 COG5095 TAF6 Transcription ini 89.4 3.6 7.7E-05 36.9 9.2 74 353-426 272-359 (450)
284 cd06561 AlkD_like A new struct 88.8 14 0.00031 31.7 15.6 64 205-271 108-171 (197)
285 KOG2038 CAATT-binding transcri 88.8 32 0.00069 35.6 23.3 262 239-506 302-607 (988)
286 PF08623 TIP120: TATA-binding 88.7 4.7 0.0001 33.4 8.9 76 174-250 38-115 (169)
287 smart00802 UME Domain in UVSB 88.4 4.4 9.4E-05 30.7 8.0 71 165-237 13-89 (107)
288 COG5098 Chromosome condensatio 88.4 32 0.0007 35.2 32.4 107 165-271 301-416 (1128)
289 smart00288 VHS Domain present 88.1 12 0.00025 29.8 11.4 71 163-233 37-113 (133)
290 smart00288 VHS Domain present 87.8 7.5 0.00016 30.9 9.5 74 435-508 36-115 (133)
291 PF09324 DUF1981: Domain of un 87.8 5.9 0.00013 28.6 8.1 68 433-500 14-84 (86)
292 PF08767 CRM1_C: CRM1 C termin 87.1 27 0.00058 32.8 19.9 136 334-469 42-198 (319)
293 smart00802 UME Domain in UVSB 86.7 11 0.00024 28.5 9.3 58 451-510 30-89 (107)
294 COG5537 IRR1 Cohesin [Cell div 86.5 26 0.00056 35.1 13.7 142 164-309 276-422 (740)
295 KOG2153 Protein involved in th 86.3 41 0.00088 34.1 21.3 52 337-388 303-354 (704)
296 PF08623 TIP120: TATA-binding 86.0 2.3 5E-05 35.1 5.8 57 410-467 40-96 (169)
297 cd03572 ENTH_epsin_related ENT 86.0 14 0.00031 28.7 10.4 69 435-503 37-118 (122)
298 PF00790 VHS: VHS domain; Int 85.9 17 0.00036 29.3 12.6 76 434-509 40-123 (140)
299 COG5234 CIN1 Beta-tubulin fold 85.7 9.3 0.0002 38.8 10.5 174 214-388 208-417 (993)
300 cd00197 VHS_ENTH_ANTH VHS, ENT 85.4 15 0.00032 28.3 10.2 38 396-433 36-73 (115)
301 PF04078 Rcd1: Cell differenti 85.3 21 0.00045 31.9 11.5 112 238-349 92-219 (262)
302 PF14664 RICTOR_N: Rapamycin-i 84.1 41 0.00089 32.3 26.9 226 199-426 22-269 (371)
303 cd03572 ENTH_epsin_related ENT 83.8 18 0.0004 28.1 10.2 38 158-195 33-70 (122)
304 PF09324 DUF1981: Domain of un 83.7 9.8 0.00021 27.5 7.6 68 160-227 14-84 (86)
305 cd03565 VHS_Tom1 VHS domain fa 83.7 21 0.00046 28.7 11.4 98 406-509 14-120 (141)
306 cd03567 VHS_GGA VHS domain fam 83.3 22 0.00047 28.5 11.7 72 163-234 38-119 (139)
307 PF14911 MMS22L_C: S-phase gen 82.3 47 0.001 31.7 16.0 89 435-525 255-348 (373)
308 PF14225 MOR2-PAG1_C: Cell mor 81.9 40 0.00086 30.5 18.0 137 281-426 112-254 (262)
309 COG5101 CRM1 Importin beta-rel 81.4 66 0.0014 32.7 32.9 145 324-468 486-651 (1053)
310 cd00197 VHS_ENTH_ANTH VHS, ENT 80.9 23 0.0005 27.2 10.7 38 160-197 34-71 (115)
311 PF12397 U3snoRNP10: U3 small 80.4 25 0.00054 27.3 9.7 71 238-311 3-76 (121)
312 PF12726 SEN1_N: SEN1 N termin 80.1 89 0.0019 33.4 35.2 113 354-468 437-556 (727)
313 COG5369 Uncharacterized conser 79.9 26 0.00057 34.6 10.8 169 357-525 430-623 (743)
314 smart00567 EZ_HEAT E-Z type HE 79.9 3.4 7.4E-05 22.6 3.2 29 490-526 2-30 (30)
315 cd07064 AlkD_like_1 A new stru 79.7 40 0.00088 29.3 15.9 134 86-233 46-181 (208)
316 KOG2153 Protein involved in th 79.4 76 0.0017 32.3 26.6 73 356-429 458-532 (704)
317 PF07539 DRIM: Down-regulated 79.0 14 0.0003 29.7 7.6 82 279-367 16-97 (141)
318 PF12726 SEN1_N: SEN1 N termin 78.9 97 0.0021 33.2 27.0 136 141-276 98-249 (727)
319 PF14225 MOR2-PAG1_C: Cell mor 78.6 51 0.0011 29.8 17.7 140 358-507 111-257 (262)
320 smart00185 ARM Armadillo/beta- 78.6 4.3 9.2E-05 24.0 3.7 28 476-503 13-40 (41)
321 COG5110 RPN1 26S proteasome re 77.4 81 0.0018 31.5 18.1 29 10-38 48-76 (881)
322 smart00185 ARM Armadillo/beta- 77.2 4.9 0.00011 23.7 3.7 27 437-463 13-39 (41)
323 KOG1222 Kinesin associated pro 76.3 81 0.0018 30.9 24.3 110 145-254 283-399 (791)
324 cd07064 AlkD_like_1 A new stru 76.1 52 0.0011 28.6 15.3 131 126-270 47-179 (208)
325 COG5369 Uncharacterized conser 74.7 13 0.00028 36.6 7.3 108 397-504 431-545 (743)
326 KOG2199 Signal transducing ada 74.4 35 0.00075 32.2 9.6 34 437-470 46-79 (462)
327 KOG2199 Signal transducing ada 74.2 28 0.00061 32.8 9.0 74 203-276 46-124 (462)
328 KOG1087 Cytosolic sorting prot 73.9 43 0.00093 33.1 10.7 99 404-508 12-116 (470)
329 KOG3678 SARM protein (with ste 73.8 92 0.002 30.3 17.9 142 90-231 184-336 (832)
330 KOG2759 Vacuolar H+-ATPase V1 73.7 88 0.0019 30.1 25.6 69 397-465 366-438 (442)
331 PF14668 RICTOR_V: Rapamycin-i 72.1 9.9 0.00021 26.4 4.4 53 414-466 4-59 (73)
332 KOG2229 Protein required for a 71.3 1.1E+02 0.0024 30.2 25.5 96 429-528 233-328 (616)
333 PF03130 HEAT_PBS: PBS lyase H 71.0 3.2 6.9E-05 22.2 1.5 13 491-503 1-13 (27)
334 KOG1087 Cytosolic sorting prot 70.7 58 0.0012 32.2 10.8 97 134-235 14-116 (470)
335 PF14668 RICTOR_V: Rapamycin-i 69.6 17 0.00036 25.3 5.1 56 453-508 4-62 (73)
336 cd06561 AlkD_like A new struct 69.2 72 0.0016 27.2 15.9 64 283-349 108-171 (197)
337 PF12783 Sec7_N: Guanine nucle 67.4 72 0.0016 26.5 12.6 95 410-504 35-146 (168)
338 PF12612 TFCD_C: Tubulin foldi 67.4 60 0.0013 27.8 9.4 108 84-192 5-116 (193)
339 PF14228 MOR2-PAG1_mid: Cell m 67.2 2.2E+02 0.0047 32.0 27.8 287 160-467 193-574 (1120)
340 KOG2005 26S proteasome regulat 67.0 1.6E+02 0.0035 30.4 18.8 252 160-429 449-707 (878)
341 PF07539 DRIM: Down-regulated 66.6 46 0.00099 26.8 7.8 82 435-523 16-97 (141)
342 PF06371 Drf_GBD: Diaphanous G 64.9 44 0.00095 28.3 8.2 56 448-503 128-186 (187)
343 KOG3961 Uncharacterized conser 63.7 30 0.00065 29.7 6.3 87 201-289 113-201 (262)
344 cd03565 VHS_Tom1 VHS domain fa 63.4 77 0.0017 25.5 12.3 61 174-234 50-118 (141)
345 KOG0929 Guanine nucleotide exc 63.1 2.4E+02 0.0053 32.5 14.6 144 48-196 1037-1207(1514)
346 KOG3961 Uncharacterized conser 62.9 28 0.00061 29.8 6.1 88 435-522 113-207 (262)
347 KOG2229 Protein required for a 62.0 1.7E+02 0.0037 29.0 26.3 328 162-502 19-379 (616)
348 KOG1932 TATA binding protein a 61.1 2.6E+02 0.0057 30.9 16.8 72 135-213 653-726 (1180)
349 PF04388 Hamartin: Hamartin pr 60.1 1.9E+02 0.0041 30.6 12.9 150 10-172 5-161 (668)
350 PF14228 MOR2-PAG1_mid: Cell m 55.8 3.5E+02 0.0075 30.6 26.1 69 242-310 504-573 (1120)
351 KOG3036 Protein involved in ce 54.0 1.6E+02 0.0035 26.2 10.9 53 372-424 139-195 (293)
352 PF11935 DUF3453: Domain of un 52.6 1.7E+02 0.0037 26.1 18.2 86 397-484 43-162 (239)
353 COG4912 Predicted DNA alkylati 52.5 85 0.0018 27.3 7.4 31 240-270 153-183 (222)
354 KOG1222 Kinesin associated pro 52.3 2.5E+02 0.0053 27.8 28.4 56 160-215 342-399 (791)
355 COG5110 RPN1 26S proteasome re 50.7 2.8E+02 0.006 28.0 22.3 97 9-107 450-549 (881)
356 PF12333 Ipi1_N: Rix1 complex 50.2 89 0.0019 23.4 6.6 54 433-486 8-64 (102)
357 KOG3036 Protein involved in ce 49.9 1.9E+02 0.0041 25.8 12.7 66 164-229 125-195 (293)
358 PF12612 TFCD_C: Tubulin foldi 49.7 1.7E+02 0.0036 25.1 11.0 84 421-504 72-158 (193)
359 PF11707 Npa1: Ribosome 60S bi 49.6 2.3E+02 0.0051 26.8 16.0 145 360-504 58-237 (330)
360 PF06371 Drf_GBD: Diaphanous G 49.0 1.3E+02 0.0029 25.3 8.5 55 371-425 129-186 (187)
361 PF08569 Mo25: Mo25-like; Int 48.6 2.4E+02 0.0053 26.7 27.4 187 239-427 74-284 (335)
362 PF04388 Hamartin: Hamartin pr 48.6 3.6E+02 0.0077 28.6 14.9 85 437-523 71-161 (668)
363 PF11841 DUF3361: Domain of un 47.5 1.6E+02 0.0035 24.3 11.3 111 359-469 12-135 (160)
364 PF14631 FancD2: Fanconi anaem 45.9 5.6E+02 0.012 30.1 16.5 149 83-234 432-586 (1426)
365 PF12333 Ipi1_N: Rix1 complex 44.9 96 0.0021 23.2 6.1 53 162-214 10-65 (102)
366 PF08767 CRM1_C: CRM1 C termin 44.4 2.8E+02 0.006 26.1 30.0 169 295-465 42-244 (319)
367 KOG4646 Uncharacterized conser 43.4 1.7E+02 0.0037 23.4 10.0 96 369-464 28-127 (173)
368 KOG1877 Putative transmembrane 43.4 4.5E+02 0.0097 28.2 18.9 109 201-309 55-174 (819)
369 COG5231 VMA13 Vacuolar H+-ATPa 41.5 3E+02 0.0065 25.7 16.1 68 437-504 357-428 (432)
370 PF08620 RPAP1_C: RPAP1-like, 41.2 66 0.0014 22.4 4.2 38 3-40 33-70 (73)
371 COG2733 Predicted membrane pro 40.4 3.4E+02 0.0074 26.1 21.3 22 484-505 310-331 (415)
372 KOG4199 Uncharacterized conser 39.5 3.3E+02 0.0072 25.6 24.7 143 361-503 286-443 (461)
373 KOG1837 Uncharacterized conser 37.0 7.4E+02 0.016 28.9 25.4 63 446-508 1551-1615(1621)
374 PF14663 RasGEF_N_2: Rapamycin 35.5 94 0.002 23.9 4.8 33 433-465 5-37 (115)
375 PF11935 DUF3453: Domain of un 34.9 3.3E+02 0.0072 24.3 20.0 51 396-448 113-165 (239)
376 smart00139 MyTH4 Domain in Myo 34.9 2.4E+02 0.0053 22.7 8.4 35 474-508 63-98 (144)
377 PF11919 DUF3437: Domain of un 34.3 1.3E+02 0.0027 22.0 5.0 54 178-232 4-59 (90)
378 PF11841 DUF3361: Domain of un 34.1 2.7E+02 0.0058 23.0 10.8 62 254-315 73-137 (160)
379 KOG1932 TATA binding protein a 33.6 7.2E+02 0.016 27.8 15.3 49 294-345 882-930 (1180)
380 COG2733 Predicted membrane pro 32.1 4.7E+02 0.01 25.2 22.8 26 325-350 307-332 (415)
381 COG5330 Uncharacterized protei 32.0 3.4E+02 0.0073 25.9 8.5 64 399-462 9-73 (364)
382 COG1698 Uncharacterized protei 31.7 2E+02 0.0044 20.8 8.3 57 159-215 13-72 (93)
383 KOG2842 Interferon-related pro 31.6 4.8E+02 0.01 25.1 14.8 277 9-288 60-379 (427)
384 KOG2753 Uncharacterized conser 31.5 4.4E+02 0.0096 24.7 14.0 174 79-270 40-216 (378)
385 PF14222 MOR2-PAG1_N: Cell mor 30.9 6.1E+02 0.013 26.1 31.3 49 473-521 469-518 (552)
386 KOG1789 Endocytosis protein RM 30.7 8.1E+02 0.018 27.5 24.9 87 398-485 2048-2140(2235)
387 KOG4646 Uncharacterized conser 30.7 2.8E+02 0.0061 22.2 9.5 94 293-386 30-127 (173)
388 PF12031 DUF3518: Domain of un 30.7 86 0.0019 27.7 4.2 114 412-525 81-227 (257)
389 PF04078 Rcd1: Cell differenti 30.5 4.1E+02 0.0089 24.0 14.0 68 124-191 94-167 (262)
390 KOG4190 Uncharacterized conser 30.3 4.3E+02 0.0093 26.5 9.1 29 378-406 416-444 (1034)
391 KOG1823 DRIM (Down-regulated i 29.7 9.2E+02 0.02 27.8 32.9 353 160-527 801-1182(1364)
392 PF12243 CTK3: CTD kinase subu 29.7 1.7E+02 0.0037 23.5 5.5 30 475-504 40-69 (139)
393 PF09759 Atx10homo_assoc: Spin 29.7 1.3E+02 0.0029 22.6 4.6 54 414-467 3-61 (102)
394 PF14663 RasGEF_N_2: Rapamycin 29.7 1.1E+02 0.0024 23.6 4.3 34 355-388 5-38 (115)
395 KOG1837 Uncharacterized conser 29.0 9.9E+02 0.022 28.0 32.0 76 452-529 1520-1597(1621)
396 PF04869 Uso1_p115_head: Uso1 28.8 4.9E+02 0.011 24.4 11.2 167 293-467 51-233 (312)
397 PF01465 GRIP: GRIP domain; I 28.3 1E+02 0.0022 19.1 3.2 33 161-193 5-37 (46)
398 KOG1926 Predicted regulator of 28.1 8.9E+02 0.019 27.1 30.5 68 85-153 73-140 (1129)
399 COG4912 Predicted DNA alkylati 27.7 4.2E+02 0.0091 23.2 10.3 67 396-466 117-184 (222)
400 cd07920 Pumilio Pumilio-family 26.7 5.3E+02 0.011 24.0 24.9 12 164-175 44-55 (322)
401 KOG3687 Tuberin - Rap/ran-GTPa 26.3 9.2E+02 0.02 26.7 21.0 89 354-443 425-521 (1697)
402 KOG3678 SARM protein (with ste 25.2 6.8E+02 0.015 24.8 18.5 146 281-426 181-336 (832)
403 PHA02855 anti-apoptotic membra 25.1 3.8E+02 0.0083 22.0 6.5 37 160-196 73-110 (180)
404 PF07531 TAFH: NHR1 homology t 23.9 2.5E+02 0.0054 20.8 4.9 9 513-521 60-68 (96)
405 COG1698 Uncharacterized protei 23.8 2.9E+02 0.0063 20.0 8.6 70 355-424 14-88 (93)
406 KOG0929 Guanine nucleotide exc 23.5 1.3E+03 0.027 27.3 16.1 104 367-470 1183-1303(1514)
407 KOG0905 Phosphoinositide 3-kin 23.1 1E+03 0.022 27.1 10.9 17 331-347 902-918 (1639)
408 PF11919 DUF3437: Domain of un 23.0 2.3E+02 0.005 20.7 4.7 59 412-471 4-64 (90)
409 PF04821 TIMELESS: Timeless pr 22.7 5.9E+02 0.013 23.2 10.8 64 3-74 7-70 (266)
410 COG5330 Uncharacterized protei 22.6 5.2E+02 0.011 24.7 8.0 63 127-189 9-73 (364)
411 KOG1566 Conserved protein Mo25 22.3 6.5E+02 0.014 23.5 17.7 106 363-468 171-289 (342)
No 1
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-45 Score=362.02 Aligned_cols=524 Identities=56% Similarity=0.848 Sum_probs=494.3
Q ss_pred CcCcHHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhccccccccccCCchHHHHHHHHHHhcccccCCCccchhc
Q 009632 7 PLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHV 86 (530)
Q Consensus 7 ~~~~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~ 86 (530)
++|+|..++..++++|...|.++.+.+..++..+|.+.++.+++|++.+..+++.+++..++..+|++...+|++++...
T Consensus 80 ~~~~ia~l~~e~~~~di~~r~~~~~~l~~~a~~~~~~~tr~~lipf~~e~~~~~dev~~~~a~~~~~~~~~v~~~~~~~~ 159 (759)
T KOG0211|consen 80 SLYPIAVLIDELSNTDIQLRLNSGRKLSNLALALGVERTRLELIPFLTEAEDDEDEVLLDLAEQLGTFLPDVGGPEYAHM 159 (759)
T ss_pred ccccHHHHhhccCchhhhhhhhhhccccchhhhcccchhhhhhhhHHHHhccchhHHHHHHHHHhcccchhccchhHHHH
Confidence 79999999999999999999999999999999999999999999999995599999999999999999999999999999
Q ss_pred chhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCC-hHHHHHHH
Q 009632 87 LLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAP-DILKTELR 165 (530)
Q Consensus 87 l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~-~~~~~~l~ 165 (530)
+++.+..++.+.+..||+.+++.+..++...++......+.|++..+..+++...|.++|.+++..+.... +..+.++.
T Consensus 160 ll~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~elr 239 (759)
T KOG0211|consen 160 LLPPLELLATVEETGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKRELR 239 (759)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHHH
Confidence 99999999999999999999999999999999988888899999999999888889999999999999988 45889999
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCch-hhhhccHH
Q 009632 166 SIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ-DCVAHILP 244 (530)
Q Consensus 166 ~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~~ 244 (530)
+.+.++++|.++.||.++++.++.++..++.+...+.+.|.+.++..|+.+.||.+|++.+..+...+... +..+.+.+
T Consensus 240 ~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~ 319 (759)
T KOG0211|consen 240 PIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTE 319 (759)
T ss_pred HHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhH
Confidence 99999999999999999999999999999998889999999999999999999999999999999998877 77888999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC----HHHHHhhh
Q 009632 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN----PELAIQHI 320 (530)
Q Consensus 245 ~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~----~~~~~~~l 320 (530)
.+.+..+|.+|++|...++.+..+...+|++.+.....+.+...++|+.+++|.+.+.-...++.... ++...+.+
T Consensus 320 ~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~i 399 (759)
T KOG0211|consen 320 SLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSI 399 (759)
T ss_pred HHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhh
Confidence 99999999999999999999999999999987778899999999999999999999999999988877 44556778
Q ss_pred hHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHH---hhHHhhhhhchhHHHhh
Q 009632 321 LPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIIS---KLDQVNQVIGIDLLSQS 397 (530)
Q Consensus 321 ~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~---~l~~l~~~~~~~~~~~~ 397 (530)
+|.+..++.|.+..+|.+.+..+..+...+|.+.....+.|.+...++|..+.||..... .+..+....|..+..+.
T Consensus 400 lp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~s 479 (759)
T KOG0211|consen 400 LPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNS 479 (759)
T ss_pred hHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhh
Confidence 899999999999999999999999999999988888899999999999999999999994 44455566777888899
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhH
Q 009632 398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHIT 477 (530)
Q Consensus 398 l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~ 477 (530)
.+|.+..+..+.+|++|.+.++.+..++...|.+++.+.+-+.+...+.|.+..+|++|...+..++..+|.+|....++
T Consensus 480 lLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i 559 (759)
T KOG0211|consen 480 LLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLEEI 559 (759)
T ss_pred hhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCChHHHHHHHHHHHHHhhhcChHHHHhhHHHHHHhhccCCCCCC
Q 009632 478 PQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRYLNL 530 (530)
Q Consensus 478 ~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~p~l~~~l~D~~~~v 530 (530)
|.+..+..+++|.+|.+.+.++..+++.+|.+.+.++++|.+..+..|++|||
T Consensus 560 ~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanV 612 (759)
T KOG0211|consen 560 PKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANV 612 (759)
T ss_pred HHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhh
Confidence 99999999999999999999999999999999999999999999999999997
No 2
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=100.00 E-value=3.2e-35 Score=289.56 Aligned_cols=489 Identities=19% Similarity=0.242 Sum_probs=438.3
Q ss_pred hcChhHHHHHHHhhcHHHHHHhhChHhhhhcccccccc-ccCCchHHHHHHHHHHhcccccCCCccchhcchhHHHhhhc
Q 009632 18 LKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCT 96 (530)
Q Consensus 18 l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~ 96 (530)
........|..++..+..++..+..+..+.++.|.+.. ..++.-.-|..++..++..+..+..+.....+.+...++++
T Consensus 168 ~~~eet~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~elr~~~~~lc~ 247 (759)
T KOG0211|consen 168 ATVEETGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKRELRPIVQSLCQ 247 (759)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHHHHHHHhhcc
Confidence 33666777999999999999888888788899999887 34444445666767777666655544567789999999999
Q ss_pred ccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCCh--HHHHHHHHHHHhhcCC
Q 009632 97 VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD--ILKTELRSIYTQLCQD 174 (530)
Q Consensus 97 d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~--~~~~~l~~~l~~l~~d 174 (530)
|.++.||..+..-++.+++.+..+.....+.|.+..+..|++..||..|...+..+...+.. +..+.+.+.+.+..+|
T Consensus 248 d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d 327 (759)
T KOG0211|consen 248 DDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAVED 327 (759)
T ss_pred ccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcC
Confidence 99999999999999999999999888888999999999999999999998888887776554 5778899999999999
Q ss_pred CChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcC----chhhhhccHHHHHHhc
Q 009632 175 DMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLE----PQDCVAHILPVIVNFS 250 (530)
Q Consensus 175 ~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~----~~~~~~~~~~~l~~~~ 250 (530)
.+|.+|.........+...++++.......+.+..+++|...++|.+...-...+..... ++...+.++|.+..++
T Consensus 328 ~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv 407 (759)
T KOG0211|consen 328 GSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLV 407 (759)
T ss_pred hhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHH
Confidence 999999999999999999999977777889999999999999999999999999998887 3445667889999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHH---HHHHHhhCHHHHHhhhhHhHhHh
Q 009632 251 QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV---TKFCRILNPELAIQHILPCVKEL 327 (530)
Q Consensus 251 ~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l---~~~~~~~~~~~~~~~l~~~l~~~ 327 (530)
.|.+..||.+.+..+..+...+|.+.+...+.|.+...++|..++||.+....+ ...-...|.....+..+|.+..+
T Consensus 408 ~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el 487 (759)
T KOG0211|consen 408 LDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVEL 487 (759)
T ss_pred hcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhh
Confidence 999999999999999999988998888899999999999999999999999544 44444567778889999999999
Q ss_pred ccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhc
Q 009632 328 SSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE 407 (530)
Q Consensus 328 ~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~ 407 (530)
..|.+|++|.++++.++.++...|..++.+.+.+.+...+.|....+|.+|...+..++..+|.+|....++|.+.....
T Consensus 488 ~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~ 567 (759)
T KOG0211|consen 488 AEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDL 567 (759)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhc
Confidence 99999999999999999999999988999999999999999999999999999999999999999999999999999988
Q ss_pred CCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhccCC
Q 009632 408 DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNP 487 (530)
Q Consensus 408 ~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~ 487 (530)
+++|..|.+.+.++..++..+|.+.+.++++|.+..+..|++++||..+++.+..+...+........+.|.+..+..|+
T Consensus 568 q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~d~ 647 (759)
T KOG0211|consen 568 QDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSSDQ 647 (759)
T ss_pred CcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhccCc
Confidence 88999999999999999999999999999999999999999999999999999999999988888899999999999999
Q ss_pred ChHHHHHHHHHHHHHhhhc
Q 009632 488 HYLYRMTILRAISLLAPVM 506 (530)
Q Consensus 488 ~~~vr~~a~~~l~~i~~~~ 506 (530)
+.++|..|..+++.+....
T Consensus 648 ~~dvr~~a~~a~~~i~l~~ 666 (759)
T KOG0211|consen 648 ELDVRYRAILAFGSIELSR 666 (759)
T ss_pred ccchhHHHHHHHHHHHHHH
Confidence 9999999999999887653
No 3
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.9e-29 Score=246.56 Aligned_cols=505 Identities=18% Similarity=0.242 Sum_probs=392.9
Q ss_pred cHHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhcccccccc--ccCCchHHHHHHHHHHhccccc----CCCccc
Q 009632 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE--NNDDDDEVLLAMAEELGVFIPY----VGGVEH 83 (530)
Q Consensus 10 ~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~--~~d~~~~vr~~~~~~l~~~~~~----~~~~~~ 83 (530)
++..|+.++.++|...|..|-+.+..+... . .++|.|.. -...+|++|..++..+.++... +. .+.
T Consensus 5 ~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~---~----~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~-~e~ 76 (1075)
T KOG2171|consen 5 PLEQLLQQLLSPDNEVRRQAEEALETLAKT---E----PLLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLS-AEV 76 (1075)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhhcc---c----chHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCC-HHH
Confidence 578899999999999999999998876432 2 26666665 3567899999999888765442 22 222
Q ss_pred hh-cchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChH---
Q 009632 84 AH-VLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI--- 159 (530)
Q Consensus 84 ~~-~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~--- 159 (530)
.+ ....+|......+.+.||++-++.+..+++..-++ .|+.+++.+.+..+++++..|+.+..++..+...++..
T Consensus 77 ~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~ 155 (1075)
T KOG2171|consen 77 QQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQP 155 (1075)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccch
Confidence 22 33445666778889999999999999999988887 88899999999999999999999999999988887765
Q ss_pred HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc--hh------hHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhh
Q 009632 160 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP--AH------LKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGK 231 (530)
Q Consensus 160 ~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~--~~------~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~ 231 (530)
+...+++.|.+.++|++..||..++++++.++...+. .. ..+.++..+.+.+.++++..-..+.+++..++.
T Consensus 156 ~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e 235 (1075)
T KOG2171|consen 156 HLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLE 235 (1075)
T ss_pred hHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHh
Confidence 6779999999999999888999999999999998862 11 123344455566677777778888899988888
Q ss_pred hcCc--hhhhhccHHHHHHhcCC--CCHHHHHHHHHHHHHHHHHhCC-----cccccchHHHHHHhcCCCc---------
Q 009632 232 LLEP--QDCVAHILPVIVNFSQD--KSWRVRYMVANQLYELCEAVGP-----EPTRMDLVPAYVRLLRDNE--------- 293 (530)
Q Consensus 232 ~~~~--~~~~~~~~~~l~~~~~d--~~~~vr~~~~~~l~~l~~~~~~-----~~~~~~l~~~l~~~l~d~~--------- 293 (530)
..++ ..+...++........+ -+..+|..+.+.+..+++.... ......+++.++.++.|..
T Consensus 236 ~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d 315 (1075)
T KOG2171|consen 236 SEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNED 315 (1075)
T ss_pred hchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhcccc
Confidence 7766 34455666666666655 4578999999999888876211 1134567788877764211
Q ss_pred -------HHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCH--HHHHHhHHHHHH
Q 009632 294 -------AEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK--DATIEQLLPIFL 364 (530)
Q Consensus 294 -------~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~ 364 (530)
..-...|.+++..++-.+|++.+.+.+++.+..++++.+|+-|.+++-+++.+++.+++ ....+++++.++
T Consensus 316 ~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl 395 (1075)
T KOG2171|consen 316 DLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVL 395 (1075)
T ss_pred ccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 11356788999999999999988899999999999999999999999999999988764 335778999999
Q ss_pred HhhcCCChHHHHHHHHhhHHhhhhhchh----------------------------------------------HHHhhH
Q 009632 365 SLLKDEFPDVRLNIISKLDQVNQVIGID----------------------------------------------LLSQSL 398 (530)
Q Consensus 365 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~----------------------------------------------~~~~~l 398 (530)
+.|+|+.+.||.+|+.+++++...++++ .+.+.+
T Consensus 396 ~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~l 475 (1075)
T KOG2171|consen 396 NGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGL 475 (1075)
T ss_pred hhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 9999999999999999999997654321 111223
Q ss_pred HH-HHHHHhcCCChHHHHHHHHHHHHHHhhhChhh--HHHHHHHHHHHHhcC----CcHHHHHHHHHHHHHHHHHhChhH
Q 009632 399 LP-AIVELAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQD----KVYSIRDAAANNLKRLAEEFGPEW 471 (530)
Q Consensus 399 ~~-~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~d----~~~~Vr~~a~~~l~~l~~~~~~~~ 471 (530)
+. .+..+.++++..+|+.++.+++.++...+..+ +.+.++|.+.+.+.. ....+|....+|++.+..+.|++.
T Consensus 476 m~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~ 555 (1075)
T KOG2171|consen 476 MEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEK 555 (1075)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhh
Confidence 33 23335567789999999999999999988777 457899999998864 345789999999999999999664
Q ss_pred Hh---hhhHHHHHhh---ccCCChHHHHHHHHHHHHHhhhcChHH--HHhhHHHHHHhhc
Q 009632 472 AM---QHITPQVLEM---INNPHYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINAS 523 (530)
Q Consensus 472 ~~---~~i~~~l~~~---~~d~~~~vr~~a~~~l~~i~~~~~~~~--~~~~~~p~l~~~l 523 (530)
+. ++++..+... -.+.+...|...+.+++.+++.+|+++ +++.++|.+.+..
T Consensus 556 F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta 615 (1075)
T KOG2171|consen 556 FLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTA 615 (1075)
T ss_pred hhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhh
Confidence 33 5566666555 345677889999999999999999764 6888888777643
No 4
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=1.1e-29 Score=236.38 Aligned_cols=508 Identities=22% Similarity=0.228 Sum_probs=370.9
Q ss_pred CCCcCcHHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhcccccccc-----------------------------
Q 009632 5 DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE----------------------------- 55 (530)
Q Consensus 5 ~~~~~~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~----------------------------- 55 (530)
++-+..+..|+++-.|+|...|..+...+.+.-.. .+..+.|+=.+..
T Consensus 9 e~~l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~~---pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~ 85 (885)
T KOG2023|consen 9 EQGLQQLAQLLKNSQSPNSETRNNVQEKLEQFNLF---PDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPS 85 (885)
T ss_pred HHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcc---cchhceeeEEEecccccchhHHHHhhhhHhccccccccCCCh
Confidence 44567788899999999999999998887766321 1122222222222
Q ss_pred -------------ccCCchHHHHHHHHHHhcccccCCCccchhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChh--
Q 009632 56 -------------NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES-- 120 (530)
Q Consensus 56 -------------~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~-- 120 (530)
+-|.++-+|..+...+.+++.. ++-.+++.++|.|.+++..++....+.|+.+|+++++.....
T Consensus 86 ~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~-~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~ld 164 (885)
T KOG2023|consen 86 EVLDYIKSECLHGLGDASPLIRATVGIVITTIAST-GGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLD 164 (885)
T ss_pred HHHHHHHHHHHhhccCchHHHHhhhhheeeeeecc-cccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHh
Confidence 2234444554444444444443 335678999999999999999999999999999999975541
Q ss_pred -----hhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChH---HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHh
Q 009632 121 -----DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAA 192 (530)
Q Consensus 121 -----~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~---~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~ 192 (530)
.-...++|.+.++.+++++..|..|..++......-+.. .....++.+..+.+|++++||+..|.++..+.+
T Consensus 165 s~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Lle 244 (885)
T KOG2023|consen 165 SDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLE 244 (885)
T ss_pred hhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 223458899999999999999999999998887766654 568888999999999999999999999999998
Q ss_pred hhcc--hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhc-Cc---hhhhhccHHHHHH----------hcC-----
Q 009632 193 TVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLL-EP---QDCVAHILPVIVN----------FSQ----- 251 (530)
Q Consensus 193 ~~~~--~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~-~~---~~~~~~~~~~l~~----------~~~----- 251 (530)
..+. ......++.++.+..+|.+++|-..|.+.+.++++.- .+ ..+.+.++|.+.. +++
T Consensus 245 vr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD 324 (885)
T KOG2023|consen 245 VRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEED 324 (885)
T ss_pred hcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCcccc
Confidence 7665 3456678899999999999999999999999998763 22 2345556666643 111
Q ss_pred -------------------------------C----------CCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcC
Q 009632 252 -------------------------------D----------KSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLR 290 (530)
Q Consensus 252 -------------------------------d----------~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~ 290 (530)
| .+|..|++.+.+|..++..+|++. ...++|.+.+.+.
T Consensus 325 ~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~el-L~~l~PlLk~~L~ 403 (885)
T KOG2023|consen 325 ESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDEL-LPILLPLLKEHLS 403 (885)
T ss_pred ccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHH-HHHHHHHHHHHcC
Confidence 0 139999999999999999999776 6789999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHhhC--HHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccC---HHHHHHhHHHHHHH
Q 009632 291 DNEAEVRIAAAGKVTKFCRILN--PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG---KDATIEQLLPIFLS 365 (530)
Q Consensus 291 d~~~~vr~~a~~~l~~~~~~~~--~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~ 365 (530)
.++|-||++++-+++.+++.+- -...++.++|.+..++.|+.+-||.-.+.+++++++..- .+.+...++.-+++
T Consensus 404 ~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~ 483 (885)
T KOG2023|consen 404 SEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLR 483 (885)
T ss_pred cchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHH
Confidence 9999999999999999998763 335567899999999999999999999999988876543 23444555555666
Q ss_pred hhcCCChHHHHHHHHhhHHhhhhhchhHH---------------------------------------------HhhHHH
Q 009632 366 LLKDEFPDVRLNIISKLDQVNQVIGIDLL---------------------------------------------SQSLLP 400 (530)
Q Consensus 366 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~---------------------------------------------~~~l~~ 400 (530)
.+-|.+..|+++|+++++.+.+..|.+-+ .+.++|
T Consensus 484 ~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmP 563 (885)
T KOG2023|consen 484 RLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMP 563 (885)
T ss_pred HHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhcc
Confidence 67799999999999999998765443210 112233
Q ss_pred HHHH---HhcCCChHHHHHHHHHHHHHHhhhChhh---------------------------------------------
Q 009632 401 AIVE---LAEDRHWRVRLAIIEYIPLLASQLGVGF--------------------------------------------- 432 (530)
Q Consensus 401 ~l~~---~~~~~~~~~R~~~~~~l~~l~~~~~~~~--------------------------------------------- 432 (530)
.|.+ .++|++ .--.-.+++++.+++.+|..|
T Consensus 564 PLi~KW~~lsd~D-KdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL 642 (885)
T KOG2023|consen 564 PLIEKWELLSDSD-KDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDL 642 (885)
T ss_pred HHHHHHHhcCccc-chHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHH
Confidence 3221 122221 111223444444444333221
Q ss_pred ----------------HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHH--hhhhHHHHHhhccCCChHHHHH
Q 009632 433 ----------------FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA--MQHITPQVLEMINNPHYLYRMT 494 (530)
Q Consensus 433 ----------------~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~--~~~i~~~l~~~~~d~~~~vr~~ 494 (530)
+...++.++..++.|+.++||..+...+|.+..++.+... ...++|.+-..++..+..+-.+
T Consensus 643 ~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nN 722 (885)
T KOG2023|consen 643 LSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNN 722 (885)
T ss_pred HhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHH
Confidence 1234777888999999999999999999999998743321 2556777666666778889999
Q ss_pred HHHHHHHHhhhcChHHHHhhHHHHH
Q 009632 495 ILRAISLLAPVMGSEITCSRLLPVV 519 (530)
Q Consensus 495 a~~~l~~i~~~~~~~~~~~~~~p~l 519 (530)
|++++|.++..+|.+. ..++-|.+
T Consensus 723 A~WAiGeia~k~g~~~-~~~v~~vl 746 (885)
T KOG2023|consen 723 AIWAIGEIALKMGLKM-KQYVSPVL 746 (885)
T ss_pred HHHHHHHHHHHhchhh-hhHHHHHH
Confidence 9999999999998653 23444433
No 5
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.3e-26 Score=227.68 Aligned_cols=470 Identities=17% Similarity=0.212 Sum_probs=367.0
Q ss_pred HHHHHhc-ChhHHHHHHHhhcHHHHHHhhChHhhhhcccccccc-ccCCchHHHHHHHHHHhcccccCCCc--cchhcch
Q 009632 13 VLIDELK-NDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGV--EHAHVLL 88 (530)
Q Consensus 13 ~l~~~l~-~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~~--~~~~~l~ 88 (530)
.|++.+. -+.+.+|..-...+..+++...++ .|+++++++.+ ++++++..|..+...|..+...+|+. .|...+.
T Consensus 83 ~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~ 161 (1075)
T KOG2171|consen 83 SLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLL 161 (1075)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHH
Confidence 4555554 556778999999999999998888 99999999999 88999999999999999988888753 3567899
Q ss_pred hHHHhhhcccchHHHHHHHHHHHHHHhhcC--hhhhh--hhHHHHH----HHHhcCCccchhHHHHhHhhhhcCCCCh--
Q 009632 89 PPLETLCTVEETCVRDKAVESLCRIGSQMR--ESDLV--DWYIPLV----KRLAAGEWFTARVSACGLFHIAYPSAPD-- 158 (530)
Q Consensus 89 ~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~--~~~~~--~~l~~~l----~~l~~~~~~~~r~~~~~~l~~l~~~~~~-- 158 (530)
++|.+-.+|++..||..|+++++.++..++ +.... ..++|.+ ....++++...-..+...+..+....++
T Consensus 162 ~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l 241 (1075)
T KOG2171|consen 162 RLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLL 241 (1075)
T ss_pred HHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHH
Confidence 999999999988899999999999999885 22222 2244533 3334445555556677777777666555
Q ss_pred -HHHHHHHHHHHhhcCCC--ChhHHHHHHHHHHHHHhhhcc-----hhhHHHHHHHHHHhhcCC----------------
Q 009632 159 -ILKTELRSIYTQLCQDD--MPMVRRSAASNLGKFAATVEP-----AHLKTDIMSIFEDLTQDD---------------- 214 (530)
Q Consensus 159 -~~~~~l~~~l~~l~~d~--~~~vR~~a~~~l~~l~~~~~~-----~~~~~~l~~~l~~~~~d~---------------- 214 (530)
.+..+++.+.++...+. +..+|..|++.+..++++.+. ..+.+.+++.+...+.|.
T Consensus 242 ~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~ 321 (1075)
T KOG2171|consen 242 RPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDD 321 (1075)
T ss_pred HHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhcccccccccc
Confidence 36677777777777655 688999999999999988553 235566777777765431
Q ss_pred chhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcc--cccchHHHHHHhcCCC
Q 009632 215 QDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRDN 292 (530)
Q Consensus 215 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~ 292 (530)
.+.-...|.+++..++.++|++...+.+++.+..++.+.+|.-|.++..+|+.++++.++.. ..+++++..+++++|+
T Consensus 322 ~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~Dp 401 (1075)
T KOG2171|consen 322 EETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDP 401 (1075)
T ss_pred ccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCC
Confidence 12256778999999999999998899999999999999999999999999999998876543 3568999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhhCHH---HHHhhhhHhHhHhccC-CcHHHHHHHHHHHHhhccccCHHHH---HHhHHH-HHH
Q 009632 293 EAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSD-SSQHVRSALASVIMGMAPLLGKDAT---IEQLLP-IFL 364 (530)
Q Consensus 293 ~~~vr~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~~~~d-~~~~vr~~~~~~l~~l~~~~~~~~~---~~~l~~-~l~ 364 (530)
+|.||.+|+.+++++...+.++ ...+.+.|.+...+.+ .+.+|...++..+..+.+.+.++.+ .+.++. .+.
T Consensus 402 hprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~ 481 (1075)
T KOG2171|consen 402 HPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLL 481 (1075)
T ss_pred CHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999876 4456777777776665 4679999999999888877776544 444444 444
Q ss_pred HhhcCCChHHHHHHHHhhHHhhhhhchhH--HHhhHHHHHHHHhcCC----ChHHHHHHHHHHHHHHhhhChhhHHH---
Q 009632 365 SLLKDEFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAEDR----HWRVRLAIIEYIPLLASQLGVGFFDD--- 435 (530)
Q Consensus 365 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~~~~~----~~~~R~~~~~~l~~l~~~~~~~~~~~--- 435 (530)
.+++.+.+.||+.++.+++.+....+... +.+.++|.|.+.+++. ....|...+++++.++..+|++.|.+
T Consensus 482 ~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~ 561 (1075)
T KOG2171|consen 482 LLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAE 561 (1075)
T ss_pred HHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHH
Confidence 55677889999999999999998776543 3477888888887654 36788889999999999999887764
Q ss_pred HHHHHHHHH---hcCCcHHHHHHHHHHHHHHHHHhChhHHh--hhhHHHHHhh
Q 009632 436 KLGALCMQW---LQDKVYSIRDAAANNLKRLAEEFGPEWAM--QHITPQVLEM 483 (530)
Q Consensus 436 ~~~~~l~~~---l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~--~~i~~~l~~~ 483 (530)
.++..+..+ -.|.+...|...+..++.+++.+|+++.+ ..++|.+.+.
T Consensus 562 eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~t 614 (1075)
T KOG2171|consen 562 ELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKT 614 (1075)
T ss_pred HHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHh
Confidence 455555555 44566678999999999999999998654 5566666553
No 6
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.94 E-value=2.9e-23 Score=195.98 Aligned_cols=513 Identities=17% Similarity=0.232 Sum_probs=361.3
Q ss_pred cHHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhcccccccc--ccCCchH-HHHHHHHHHhcccccCC-------
Q 009632 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE--NNDDDDE-VLLAMAEELGVFIPYVG------- 79 (530)
Q Consensus 10 ~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~--~~d~~~~-vr~~~~~~l~~~~~~~~------- 79 (530)
.|..++-++|++.+..|..+++.|.+-+..+|.+..++.++|++++ +.|+.-+ +....-+.|..+-..+.
T Consensus 364 ~i~~llLkvKNG~ppmRk~~LR~ltdkar~~ga~~lfnqiLpllMs~tLeDqerhllVkvidriLyklDdlvrpYVhkIL 443 (1172)
T KOG0213|consen 364 KIMRLLLKVKNGTPPMRKSALRILTDKARNFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKIL 443 (1172)
T ss_pred HHHHHHHhhcCCCchhHHHHHHHHHHHHHhhccHHHHHHHHHHHcCccccchhhhhHHHHHHHHHHhhcccchhceeeeE
Confidence 3678889999999999999999999999999999999999999988 4444322 12222222322211111
Q ss_pred --------Cccchhcchh--HHH----------------hhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHH
Q 009632 80 --------GVEHAHVLLP--PLE----------------TLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRL 133 (530)
Q Consensus 80 --------~~~~~~~l~~--~l~----------------~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l 133 (530)
.+++.....+ ++. .-....++-||+....+++.+++.++- ..++|+++..
T Consensus 444 vViepllided~yar~egreIisnLakaaGla~mistmrpDidn~deYVRnttarafavvasalgi----p~llpfLkav 519 (1172)
T KOG0213|consen 444 VVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNKDEYVRNTTARAFAVVASALGI----PALLPFLKAV 519 (1172)
T ss_pred EEeecceecchHHHhhchHHHHHHHHHHhhhHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHhCc----HHHHHHHHHH
Confidence 1111111111 111 112346889999999999999998865 4588999999
Q ss_pred hcCC-ccchhHHHHhHhhhhcCCCChH---HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc---hhhHHHHHH-
Q 009632 134 AAGE-WFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMS- 205 (530)
Q Consensus 134 ~~~~-~~~~r~~~~~~l~~l~~~~~~~---~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~- 205 (530)
+++. +|..|..++.+...++..++.. +...++.++.+.+.|.+..||.-++.+++.+++...+ +.+-+.+-|
T Consensus 520 c~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpL 599 (1172)
T KOG0213|consen 520 CGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPL 599 (1172)
T ss_pred hccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 9998 9999999999888877666654 7788999999999999999999999999999998775 222111111
Q ss_pred ----------------------------------------HHHHhhcCCchhHHHHHHHHHHHHhhhcCch--hhhhccH
Q 009632 206 ----------------------------------------IFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ--DCVAHIL 243 (530)
Q Consensus 206 ----------------------------------------~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~ 243 (530)
.+..=...++++.++..++.+..++..-|-+ -....++
T Consensus 600 wkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dil 679 (1172)
T KOG0213|consen 600 WKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDIL 679 (1172)
T ss_pred HHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhh
Confidence 1111123455666666666666666554431 1112233
Q ss_pred HHHHH---------------------------------------hcCCCCHHHHHHHHHHHHHHHHHhCCccc----ccc
Q 009632 244 PVIVN---------------------------------------FSQDKSWRVRYMVANQLYELCEAVGPEPT----RMD 280 (530)
Q Consensus 244 ~~l~~---------------------------------------~~~d~~~~vr~~~~~~l~~l~~~~~~~~~----~~~ 280 (530)
|.+.. -+.|..+.-|.+.+.++..+...+|.... .+.
T Consensus 680 p~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~ 759 (1172)
T KOG0213|consen 680 PEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEER 759 (1172)
T ss_pred HHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHH
Confidence 32211 12455566667666666666666554322 123
Q ss_pred hHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH--HHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhcc---ccCHHHH
Q 009632 281 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP--ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAP---LLGKDAT 355 (530)
Q Consensus 281 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~---~~~~~~~ 355 (530)
++..++..+.+...++. -.+..++.++..+|. +.+.+.+...+...++++++.+|..++..++.++. .++.+..
T Consensus 760 lidgil~Afqeqtt~d~-vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~ 838 (1172)
T KOG0213|consen 760 LIDGILYAFQEQTTEDS-VMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKL 838 (1172)
T ss_pred HHHHHHHHHHhcccchh-hhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHH
Confidence 34444444433322221 345566666666665 45566677777778899999999999999888764 5566777
Q ss_pred HHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHH---hhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhh
Q 009632 356 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS---QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF 432 (530)
Q Consensus 356 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~---~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~ 432 (530)
..++--++...|..+.++|--..+.++..+++.+|-.... +.++|.+..++++.+..+...++..++.++..- +++
T Consensus 839 m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~Iadrg-pE~ 917 (1172)
T KOG0213|consen 839 MGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRG-PEY 917 (1172)
T ss_pred HHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcC-ccc
Confidence 7888888999999999999999999999999998765432 578999999999999999999999999998743 222
Q ss_pred H-HHHHHHH---HHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHh-------------------------------hhhH
Q 009632 433 F-DDKLGAL---CMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM-------------------------------QHIT 477 (530)
Q Consensus 433 ~-~~~~~~~---l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~-------------------------------~~i~ 477 (530)
. ....+.+ ++.+|+.....+|.+|..++|.|+++.|+..+. -.++
T Consensus 918 v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVL 997 (1172)
T KOG0213|consen 918 VSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVL 997 (1172)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhh
Confidence 1 2223333 344566778899999999999999999986311 2478
Q ss_pred HHHHhhccCCChHHHHHHHHHHHHHhhhcCh--HHHHhhHHHHHHhhccCCCC
Q 009632 478 PQVLEMINNPHYLYRMTILRAISLLAPVMGS--EITCSRLLPVVINASKDRYL 528 (530)
Q Consensus 478 ~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~--~~~~~~~~p~l~~~l~D~~~ 528 (530)
|.+++-...|+..|+.+.+++++.+.+.+|. .++.-.+.|.+...+.|+-+
T Consensus 998 PalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~ 1050 (1172)
T KOG0213|consen 998 PALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDL 1050 (1172)
T ss_pred HHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccH
Confidence 9998888999999999999999999998884 45667789999999998754
No 7
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=5.8e-23 Score=195.04 Aligned_cols=511 Identities=17% Similarity=0.203 Sum_probs=380.1
Q ss_pred HHHHHHHhcChhHH-HHHHHhhcHHHHHHhhChHhhhh---cccc-cccc--ccCCchHHHHHHHHHHhcccccCC----
Q 009632 11 IAVLIDELKNDDIQ-LRLNSIRRLSTIARALGEERTRK---ELIP-FLSE--NNDDDDEVLLAMAEELGVFIPYVG---- 79 (530)
Q Consensus 11 ~~~l~~~l~~~~~~-~R~~a~~~l~~~~~~~~~~~~~~---~l~~-~l~~--~~d~~~~vr~~~~~~l~~~~~~~~---- 79 (530)
|..|+.+...+.+. .+..++.++|-++++..|+.... .++. .++. -..++..||.++-.+|-+-..+.+
T Consensus 131 i~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~ 210 (859)
T KOG1241|consen 131 IVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFN 210 (859)
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhc
Confidence 55677777766666 78999999999999999876533 3333 3333 345677899999999865444333
Q ss_pred CccchhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcCh---hhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcC--
Q 009632 80 GVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE---SDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYP-- 154 (530)
Q Consensus 80 ~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~-- 154 (530)
.+..++.++.+.++..+.+|..+|.+|+.||.+|+...-+ ....+.+.++.....+++++.+...+....+.++.
T Consensus 211 ~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEE 290 (859)
T KOG1241|consen 211 NEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEE 290 (859)
T ss_pred cHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHH
Confidence 3345678888889999999999999999999999886432 11223344455555677888888877777764432
Q ss_pred -------------CCCh-------HHHHHHHHHHHhhcC-------CCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHH
Q 009632 155 -------------SAPD-------ILKTELRSIYTQLCQ-------DDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIF 207 (530)
Q Consensus 155 -------------~~~~-------~~~~~l~~~l~~l~~-------d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l 207 (530)
..++ ...+.++|.+++++. |.+|.+.++|..+|.-++...+++. .+.++|++
T Consensus 291 iD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~I-v~~Vl~Fi 369 (859)
T KOG1241|consen 291 IDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDI-VPHVLPFI 369 (859)
T ss_pred HHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccc-hhhhHHHH
Confidence 1121 123578888887653 4579999999999999999887765 46899999
Q ss_pred HHhhcCCchhHHHHHHHHHHHHhhhcCch---hhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC----cccccc
Q 009632 208 EDLTQDDQDSVRLLAVEGCAALGKLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP----EPTRMD 280 (530)
Q Consensus 208 ~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~----~~~~~~ 280 (530)
.+-+..+++.-|.+|+-+++++...-.+. .+....+|.+..+..|++-.||.+++++|+.+++.+.. ......
T Consensus 370 ee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~ 449 (859)
T KOG1241|consen 370 EENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQS 449 (859)
T ss_pred HHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhH
Confidence 99999999999999999999998865542 35677889999999999999999999999999988653 334456
Q ss_pred hHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH--------HHHhhhhHhHhHhcc-----C-CcHHHHHHHHHHHHhh
Q 009632 281 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--------LAIQHILPCVKELSS-----D-SSQHVRSALASVIMGM 346 (530)
Q Consensus 281 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~--------~~~~~l~~~l~~~~~-----d-~~~~vr~~~~~~l~~l 346 (530)
+++.+.+.++|. |.|-.++.+++..+++.+... ...+.+.+.+..+++ | .+-+.|.++.+++..+
T Consensus 450 ~l~~l~~gL~De-Prva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmEl 528 (859)
T KOG1241|consen 450 KLSALLEGLNDE-PRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMEL 528 (859)
T ss_pred HHHHHHHHhhhC-chHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHH
Confidence 778888888887 889999999998888654211 111222233333332 2 3458999999999999
Q ss_pred ccccCHHHH--HHhHHHHHH----Hhhc-------C--CChHHHHHHHHhhHHhhhhhchh--HHHhhHHHHHHHHhcC-
Q 009632 347 APLLGKDAT--IEQLLPIFL----SLLK-------D--EFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAED- 408 (530)
Q Consensus 347 ~~~~~~~~~--~~~l~~~l~----~~l~-------d--~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~~- 408 (530)
.+....+.+ ...+.+++. +.++ | ...++....+..|+.+...++++ ...+.++..+.++++.
T Consensus 529 Ik~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~ 608 (859)
T KOG1241|consen 529 IKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESK 608 (859)
T ss_pred HHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCC
Confidence 887765432 222223222 2232 1 11346666777888888877764 3456788888888877
Q ss_pred CChHHHHHHHHHHHHHHhhhChhh--HHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHHhChhHH--hhhhHHHHHhh
Q 009632 409 RHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWL-QDKVYSIRDAAANNLKRLAEEFGPEWA--MQHITPQVLEM 483 (530)
Q Consensus 409 ~~~~~R~~~~~~l~~l~~~~~~~~--~~~~~~~~l~~~l-~d~~~~Vr~~a~~~l~~l~~~~~~~~~--~~~i~~~l~~~ 483 (530)
.+..+-..+..+++.++..+|..| +.+.+.|++...| +-.+..|-..|+...|.++++++.++. .+.++..|.+.
T Consensus 609 ~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~ 688 (859)
T KOG1241|consen 609 RSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQC 688 (859)
T ss_pred ccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 456688899999999999999887 4588999999999 667889999999999999999987754 37788889998
Q ss_pred ccCC--ChHHHHHHHHHHHHHhhhcChH--HHHhhHHHHHHhhc
Q 009632 484 INNP--HYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINAS 523 (530)
Q Consensus 484 ~~d~--~~~vr~~a~~~l~~i~~~~~~~--~~~~~~~p~l~~~l 523 (530)
++++ +..|+-..+.++|.|+.++|.+ .+++.++|.+.+..
T Consensus 689 Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as 732 (859)
T KOG1241|consen 689 LSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQAS 732 (859)
T ss_pred ccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 8887 5678999999999999999975 46888899888765
No 8
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=6.6e-24 Score=198.20 Aligned_cols=459 Identities=16% Similarity=0.102 Sum_probs=323.5
Q ss_pred hccccccccccCCchHHHHHHHHHHhcccccCCCccchhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcC---hhhhh
Q 009632 47 KELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMR---ESDLV 123 (530)
Q Consensus 47 ~~l~~~l~~~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~---~~~~~ 123 (530)
.++...+++..++++++|+.+-..+.++-.+ +++-.++.-+|..+- .++..+|..|.-.|++-++.-. +....
T Consensus 13 ~ql~~lLk~s~Spn~~~~~~~~~~leq~~~~---pdfnnYL~~IL~~~~-~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~ 88 (885)
T KOG2023|consen 13 QQLAQLLKNSQSPNSETRNNVQEKLEQFNLF---PDFNNYLIYILIRAK-SEDVPTRSLAGLLLKNNVRGHYNSIPSEVL 88 (885)
T ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHHhcc---cchhceeeEEEeccc-ccchhHHHHhhhhHhccccccccCCChHHH
Confidence 4556666667889999999999888877442 445555555554444 4456678888877777554321 23455
Q ss_pred hhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc-------
Q 009632 124 DWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP------- 196 (530)
Q Consensus 124 ~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~------- 196 (530)
.++-.-+.+.+.|.++-+|......+..++..-+-+.+++++|.+.++++.++....+.|..+|..+++....
T Consensus 89 ~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~ 168 (885)
T KOG2023|consen 89 DYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVL 168 (885)
T ss_pred HHHHHHHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcc
Confidence 6677777777788888889888888888888777788999999999999999999999999999999875443
Q ss_pred hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchh--hhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC
Q 009632 197 AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD--CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP 274 (530)
Q Consensus 197 ~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~ 274 (530)
......++|.+.++.+++++.+|..|+.++..+.-.-+..- ..+.++..+..+.+|.++.||..+|.++.-+.+.-.+
T Consensus 169 ~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d 248 (885)
T KOG2023|consen 169 TRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPD 248 (885)
T ss_pred cCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH
Confidence 23456789999999999999999999999888765544321 2345666667777888888888888888888776544
Q ss_pred cc--cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHh----cc-----CCcHHHHHHHHHHH
Q 009632 275 EP--TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKEL----SS-----DSSQHVRSALASVI 343 (530)
Q Consensus 275 ~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~----~~-----d~~~~vr~~~~~~l 343 (530)
.. ....++.+.++...|.+.+|...|.+-...+++.--... .+.|++.++ ++ |.+.-..
T Consensus 249 kl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~---~L~p~l~kliPvLl~~M~Ysd~D~~LL------- 318 (885)
T KOG2023|consen 249 KLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKE---VLQPYLDKLIPVLLSGMVYSDDDIILL------- 318 (885)
T ss_pred hcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHH---HHHHHHHHHHHHHHccCccccccHHHh-------
Confidence 32 345677777777788888888888888888777543333 233333333 11 1110000
Q ss_pred HhhccccCHHHHHHhHHHHHHHhh------------------cC----CChHHHHHHHHhhHHhhhhhchhHHHhhHHHH
Q 009632 344 MGMAPLLGKDATIEQLLPIFLSLL------------------KD----EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPA 401 (530)
Q Consensus 344 ~~l~~~~~~~~~~~~l~~~l~~~l------------------~d----~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~ 401 (530)
..-.+.-.-..-.+.+-|-+-+-- .| .+|+.|.+.+.++..+...+|.+- .+.++|.
T Consensus 319 ~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~el-L~~l~Pl 397 (885)
T KOG2023|consen 319 KNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDEL-LPILLPL 397 (885)
T ss_pred cCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHH-HHHHHHH
Confidence 000000000000011111111100 00 137899999999999999998554 5789999
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHhhhChhh--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHh---hhh
Q 009632 402 IVELAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM---QHI 476 (530)
Q Consensus 402 l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~---~~i 476 (530)
+.+.+.+..|.+|++++-++|.++..+-..+ ....++|++..++.|+.+-||..+|.+|+......-.+... ..+
T Consensus 398 Lk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pv 477 (885)
T KOG2023|consen 398 LKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPV 477 (885)
T ss_pred HHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHH
Confidence 9999999999999999999999999765444 34669999999999999999999999999988776332222 344
Q ss_pred HHHHHhhccCCChHHHHHHHHHHHHHhhhcChH--HHHhhHHHHHH
Q 009632 477 TPQVLEMINNPHYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVI 520 (530)
Q Consensus 477 ~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~~--~~~~~~~p~l~ 520 (530)
+..+.+.+-|.|.+|+++|+.+++.+.+..|.+ .++++++..+.
T Consensus 478 L~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~ 523 (885)
T KOG2023|consen 478 LEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLV 523 (885)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 555556677999999999999999999888765 34555554443
No 9
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.92 E-value=1.4e-21 Score=181.19 Aligned_cols=506 Identities=15% Similarity=0.160 Sum_probs=332.2
Q ss_pred HHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhcccccccc--ccCCchH-HHHHHHHHHhcccccCC--------
Q 009632 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE--NNDDDDE-VLLAMAEELGVFIPYVG-------- 79 (530)
Q Consensus 11 ~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~--~~d~~~~-vr~~~~~~l~~~~~~~~-------- 79 (530)
+-.++-+.|++++..|..+++.|.+-+..+|++.+.+.++|.+++ +.|+.-+ +....-..|..+.....
T Consensus 170 v~rllLkvKNG~~~mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~r~LeDqerhl~vk~idr~Ly~lddl~~pyvhkILv 249 (975)
T COG5181 170 VYRLLLKVKNGGKRMRMEGLRILTDKAVNFGAAAVFNKVLPMLMSRELEDQERHLVVKLIDRLLYGLDDLKVPYVHKILV 249 (975)
T ss_pred HHHHHhhcccCCchhhHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHhcccccccceeeEEE
Confidence 567888999999999999999999999999999998888888876 3333321 11112222211111000
Q ss_pred -------Cccc------hhcchhH------------HHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHh
Q 009632 80 -------GVEH------AHVLLPP------------LETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLA 134 (530)
Q Consensus 80 -------~~~~------~~~l~~~------------l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~ 134 (530)
.++. ...++.+ +..-..+.++-||+....+.+.+++.++- +.++|++..++
T Consensus 250 Vv~pllided~~~r~~g~eii~nL~~~~Gl~~~vs~mrpDi~~~deYVRnvt~ra~~vva~algv----~~llpfl~a~c 325 (975)
T COG5181 250 VVGPLLIDEDLKRRCMGREIILNLVYRCGLGFSVSSMRPDITSKDEYVRNVTGRAVGVVADALGV----EELLPFLEALC 325 (975)
T ss_pred EeeccccCccHHHhcccHHHHHHHHHHhccceeeeeccCCcccccHHHHHHHHHHHHHHHHhhCc----HHHHHHHHHHh
Confidence 0000 0001111 11112345666777666666666666553 23566666666
Q ss_pred cCC-ccchhHHHHhHhhhhcCCCChH---HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc---hhhH-------
Q 009632 135 AGE-WFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLK------- 200 (530)
Q Consensus 135 ~~~-~~~~r~~~~~~l~~l~~~~~~~---~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~------- 200 (530)
.+. +|..|..++++...++..++.. +...++..+.+++.|.+..||..++.+++.+++..++ +.+.
T Consensus 326 ~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw 405 (975)
T COG5181 326 GSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVLCPLW 405 (975)
T ss_pred cCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 665 6666766666665555444432 5566666666777777666777666666666665442 0000
Q ss_pred --------------------------------------------------------------------------------
Q 009632 201 -------------------------------------------------------------------------------- 200 (530)
Q Consensus 201 -------------------------------------------------------------------------------- 200 (530)
T Consensus 406 ~g~~~hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~~lr~~v~p 485 (975)
T COG5181 406 EGASQHRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRDQVSP 485 (975)
T ss_pred HHHHhcCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHHHHHHHhccCCCCHHHHHHhhcH
Confidence
Q ss_pred ----------------------------------HHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCch----------
Q 009632 201 ----------------------------------TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ---------- 236 (530)
Q Consensus 201 ----------------------------------~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---------- 236 (530)
+.+...+.+...|+.+..|..++.+...+...+|..
T Consensus 486 efF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl 565 (975)
T COG5181 486 EFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDPRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERL 565 (975)
T ss_pred HhhchHHHhhhcccccccceeehhHHHHHHHcCChHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHH
Confidence 111222222334555556666666655555544421
Q ss_pred ----------------------------------hhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh---CCccccc
Q 009632 237 ----------------------------------DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV---GPEPTRM 279 (530)
Q Consensus 237 ----------------------------------~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~---~~~~~~~ 279 (530)
.+...++..+..+++++.+.||..++...+.++..+ |+.....
T Consensus 566 ~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~ 645 (975)
T COG5181 566 YDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELA 645 (975)
T ss_pred HHHHHHHHHhccccccEEEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 112223444455677888888888888877776654 4444455
Q ss_pred chHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHH---HhhhhHhHhHhccCCcHHHHHHHHHHHHhhccc----cCH
Q 009632 280 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA---IQHILPCVKELSSDSSQHVRSALASVIMGMAPL----LGK 352 (530)
Q Consensus 280 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~---~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~----~~~ 352 (530)
++--++.+.+....|+|-...++++..+....+-..+ ...++|.+...+.+++.+|....+..++.++.. .|.
T Consensus 646 klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~ 725 (975)
T COG5181 646 KLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGV 725 (975)
T ss_pred HHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCH
Confidence 6666777788888888888888888877766554311 256677777777888889998888888888754 344
Q ss_pred HHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhh
Q 009632 353 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF 432 (530)
Q Consensus 353 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~ 432 (530)
.+|..... -+...|+.-+.++|..|..+++.+.+.+|+. .++..|.+-++....+.|.+..-+++.+++.+|+-.
T Consensus 726 rEWMRIcf-eLvd~Lks~nKeiRR~A~~tfG~Is~aiGPq----dvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfs 800 (975)
T COG5181 726 REWMRICF-ELVDSLKSWNKEIRRNATETFGCISRAIGPQ----DVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFS 800 (975)
T ss_pred HHHHHHHH-HHHHHHHHhhHHHHHhhhhhhhhHHhhcCHH----HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchh
Confidence 55544332 3556677888999999999999999999985 466677777777788899999999999999888643
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhH--HhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcC---
Q 009632 433 FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG--- 507 (530)
Q Consensus 433 ~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~--- 507 (530)
++|.++.=-..++.+|....+++++.++++.|+.. +.-.+.|.+...+.|.+...|+.|...+.+++-..+
T Consensus 801 ----VlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg 876 (975)
T COG5181 801 ----VLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTG 876 (975)
T ss_pred ----hHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcc
Confidence 67888877788999999999999999999988642 335688999999999999999999999999976643
Q ss_pred hHHHHhhHHHHHHhhccCCCCC
Q 009632 508 SEITCSRLLPVVINASKDRYLN 529 (530)
Q Consensus 508 ~~~~~~~~~p~l~~~l~D~~~~ 529 (530)
.++..=+++..+-.=.-|+.|.
T Consensus 877 ~eda~IHLlNllwpNIle~sPh 898 (975)
T COG5181 877 DEDAAIHLLNLLWPNILEPSPH 898 (975)
T ss_pred cHHHHHHHHHHhhhhccCCCcH
Confidence 3444333344433333444443
No 10
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.91 E-value=2.3e-20 Score=176.68 Aligned_cols=497 Identities=16% Similarity=0.151 Sum_probs=335.7
Q ss_pred hcChhHHHHHHHhhcHHHHHHhhChHhhhhcccccccc-ccCC-chHHHHHHHHHHhcccccCCC--ccchhcchhHHHh
Q 009632 18 LKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDD-DDEVLLAMAEELGVFIPYVGG--VEHAHVLLPPLET 93 (530)
Q Consensus 18 l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~-~~~vr~~~~~~l~~~~~~~~~--~~~~~~l~~~l~~ 93 (530)
+.+.|+-.|....+..+.++.++|.. .++|+|.. +.+. +-+-|....++...++-+.|. -.|...++.++..
T Consensus 485 idn~deYVRnttarafavvasalgip----~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~ 560 (1172)
T KOG0213|consen 485 IDNKDEYVRNTTARAFAVVASALGIP----ALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEH 560 (1172)
T ss_pred cccccHHHHHHHHHHHHHHHHHhCcH----HHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHH
Confidence 34667777777777777777777653 56777766 3332 444555555554444444442 2355666777777
Q ss_pred hhcccchHHHHHHHHHHHHHHhhcChhh---hhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChH----HHHHHHH
Q 009632 94 LCTVEETCVRDKAVESLCRIGSQMRESD---LVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----LKTELRS 166 (530)
Q Consensus 94 l~~d~~~~vR~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~----~~~~l~~ 166 (530)
.+.|++..||..++-+++.+++...+-. +...+-|+.+...+... ..-.+....++.+++.+.++ +-.+++-
T Consensus 561 gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkgir~hrg-k~laafLkAigyliplmd~eya~yyTrevml 639 (1172)
T KOG0213|consen 561 GLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKGIRQHRG-KELAAFLKAIGYLIPLMDAEYASYYTREVML 639 (1172)
T ss_pred hhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHccC-hHHHHHHHHHhhccccccHHHHHHhHHHHHH
Confidence 8888888888888888888888776633 33333344332222211 12223344556666655554 2234445
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHHHhhhcch--hhH---------------------------------------HHHHH
Q 009632 167 IYTQLCQDDMPMVRRSAASNLGKFAATVEPA--HLK---------------------------------------TDIMS 205 (530)
Q Consensus 167 ~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~---------------------------------------~~l~~ 205 (530)
++..=..+++.+.++..++.+...+..-+-+ ... ..++.
T Consensus 640 il~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~ 719 (1172)
T KOG0213|consen 640 ILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVS 719 (1172)
T ss_pred HHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHH
Confidence 5555556677777777777776666544421 111 11233
Q ss_pred HHHHhhcCCchhHHHHHHHHHHHHhhhcCch--------------------------------------------hhhhc
Q 009632 206 IFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ--------------------------------------------DCVAH 241 (530)
Q Consensus 206 ~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--------------------------------------------~~~~~ 241 (530)
..+.-+.|+.+..|...+++...+...+|.. .+.++
T Consensus 720 R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylpq 799 (1172)
T KOG0213|consen 720 RVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLPQ 799 (1172)
T ss_pred HHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccchHH
Confidence 3333356777888888888888887776642 11122
Q ss_pred cHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh---CCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHH--
Q 009632 242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAV---GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA-- 316 (530)
Q Consensus 242 ~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~---~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~-- 316 (530)
+...+...++++++.||..++..++.++..+ +++..+.++--.+.+.+....|+|-...+.++..+...+|....
T Consensus 800 i~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~p 879 (1172)
T KOG0213|consen 800 ICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTP 879 (1172)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCC
Confidence 2333334567888999999999888877664 44445667777788888889999999999999998888765422
Q ss_pred -HhhhhHhHhHhccCCcHHHHHHHHHHHHhhcccc----CHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch
Q 009632 317 -IQHILPCVKELSSDSSQHVRSALASVIMGMAPLL----GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI 391 (530)
Q Consensus 317 -~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~----~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 391 (530)
...++|.+...+++++.+|....+..++.++..- +..+|.... --++.+|+..+.++|.+|..+++.+.+.+|+
T Consensus 880 Pi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIc-feLlelLkahkK~iRRaa~nTfG~IakaIGP 958 (1172)
T KOG0213|consen 880 PIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRIC-FELLELLKAHKKEIRRAAVNTFGYIAKAIGP 958 (1172)
T ss_pred ChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhHHHHhcCH
Confidence 2566777777788999999999999999987543 334444332 2355667778899999999999999999998
Q ss_pred hHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh-
Q 009632 392 DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE- 470 (530)
Q Consensus 392 ~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~- 470 (530)
. .++..|.+-++....+.|.+.--+++.+++.+|+- .++|.+++--.-++.+|....++++..++++.|+-
T Consensus 959 q----dVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pF----tVLPalmneYrtPe~nVQnGVLkalsf~Feyigems 1030 (1172)
T KOG0213|consen 959 Q----DVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPF----TVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMS 1030 (1172)
T ss_pred H----HHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCch----hhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHh
Confidence 5 45666766677778888888888888888888864 36888888888899999999999999999998753
Q ss_pred -HHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhc---ChHHHHhhHHHHHHhhccCCCC
Q 009632 471 -WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVM---GSEITCSRLLPVVINASKDRYL 528 (530)
Q Consensus 471 -~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~---~~~~~~~~~~p~l~~~l~D~~~ 528 (530)
.+.-.+.|-+...+.|.+...|+.|..++.+++-.. |.++..-+++.++-.=.-++.|
T Consensus 1031 kdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN~iWpNIle~sP 1092 (1172)
T KOG0213|consen 1031 KDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTGCEDALIHLLNLIWPNILETSP 1092 (1172)
T ss_pred hhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhhhhhcCCCh
Confidence 233567899999999999999999999999987653 3455444444333332333443
No 11
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=4.8e-20 Score=175.45 Aligned_cols=476 Identities=15% Similarity=0.192 Sum_probs=319.2
Q ss_pred hhcccccccc-ccCCchHHHHHHHHHHhcccccCCCccchhcchhHHHhhhcccchH-HHHHHHHHHHHHHhhcChhhhh
Q 009632 46 RKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETC-VRDKAVESLCRIGSQMRESDLV 123 (530)
Q Consensus 46 ~~~l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~-vR~~a~~~l~~l~~~~~~~~~~ 123 (530)
++.+-..+.. +..+.|.+...|+.+++.++..=-..+.|+.++..+.....++.+. +|+.++++++-+++.+.++...
T Consensus 88 reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~ 167 (859)
T KOG1241|consen 88 REQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLE 167 (859)
T ss_pred HHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHH
Confidence 3444444444 5567888888899998887763223456788888877776666554 9999999999999999997655
Q ss_pred hhHH----HHHHHHhcC-CccchhHHHHhHhhhhcC----CCC-hHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhh
Q 009632 124 DWYI----PLVKRLAAG-EWFTARVSACGLFHIAYP----SAP-DILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAAT 193 (530)
Q Consensus 124 ~~l~----~~l~~l~~~-~~~~~r~~~~~~l~~l~~----~~~-~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~ 193 (530)
...- ..+..+.+. ++..+|.+|..++..-.+ .+. +..++.++....+..+.++.+||.+|..+|..+...
T Consensus 168 ~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~L 247 (859)
T KOG1241|consen 168 QQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSL 247 (859)
T ss_pred HHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHH
Confidence 4422 333333333 377899998888765432 233 336788888888999999999999999999998763
Q ss_pred hcc---hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhh-cC------c--hh------------hhhccHHHHHHh
Q 009632 194 VEP---AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKL-LE------P--QD------------CVAHILPVIVNF 249 (530)
Q Consensus 194 ~~~---~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~-~~------~--~~------------~~~~~~~~l~~~ 249 (530)
.=+ .+..+-++++....+..++++|...+++.|.++++- .. . +. -...++|.+.++
T Consensus 248 yY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~ 327 (859)
T KOG1241|consen 248 YYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLEL 327 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHH
Confidence 211 233445778888888999999999999999987752 11 1 00 123577887776
Q ss_pred cC-------CCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH---HHHhh
Q 009632 250 SQ-------DKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQH 319 (530)
Q Consensus 250 ~~-------d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~ 319 (530)
+. |++|..-.++..||.-+++..|++. .++++|++.+.++.++|.-|.+++-+++.+...-.++ .+...
T Consensus 328 L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~I-v~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~q 406 (859)
T KOG1241|consen 328 LTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDI-VPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQ 406 (859)
T ss_pred HHhCCCCcccccCcHHHHHHHHHHHHHHHhcccc-hhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhh
Confidence 52 3579999999999999999999887 4689999999999999999999999999998865554 33456
Q ss_pred hhHhHhHhccCCcHHHHHHHHHHHHhhccccC----HHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhc---hh
Q 009632 320 ILPCVKELSSDSSQHVRSALASVIMGMAPLLG----KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---ID 392 (530)
Q Consensus 320 l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~----~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~ 392 (530)
.+|.+..+..|++-.+|..+..+++.++..+. .......+++.+...|+|. +.|-..++.++..+.+..- ..
T Consensus 407 alp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~De-Prva~N~CWAf~~Laea~~eA~~s 485 (859)
T KOG1241|consen 407 ALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDE-PRVASNVCWAFISLAEAAYEAAVS 485 (859)
T ss_pred hhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhC-chHHHHHHHHHHHHHHHHHHhccC
Confidence 68888888889999999999999999876554 3445666777777777776 5566666677666664321 11
Q ss_pred H--------HHhhHHHHHHHHhcC---CChHHHHHHHHHHHHHHhhhChhhHH--HHHHHHHHH---------Hhc--C-
Q 009632 393 L--------LSQSLLPAIVELAED---RHWRVRLAIIEYIPLLASQLGVGFFD--DKLGALCMQ---------WLQ--D- 447 (530)
Q Consensus 393 ~--------~~~~l~~~l~~~~~~---~~~~~R~~~~~~l~~l~~~~~~~~~~--~~~~~~l~~---------~l~--d- 447 (530)
+ +.+.++..|.+...- .....|.++.++|+.+.+........ ..+.+.++. .++ |
T Consensus 486 ~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr 565 (859)
T KOG1241|consen 486 NGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADR 565 (859)
T ss_pred CCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhH
Confidence 1 223344444433221 24668888888888887765543321 112222211 111 1
Q ss_pred -CcHHHHHHHHHHHHHHHHHhChhH--HhhhhHHHHHhhccC-CChHHHHHHHHHHHHHhhhcChHH--HHhhHHHHHHh
Q 009632 448 -KVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINN-PHYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVIN 521 (530)
Q Consensus 448 -~~~~Vr~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~~~d-~~~~vr~~a~~~l~~i~~~~~~~~--~~~~~~p~l~~ 521 (530)
...++....|.+|+.+.+.++++. ..+.++..+.++++. .+.-+.+.+..+++.++..+|+.+ +.+.+.|+|..
T Consensus 566 ~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~ 645 (859)
T KOG1241|consen 566 AQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLM 645 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 222455556666666666665432 225566666666555 344556666666666666665432 45556666555
Q ss_pred hc
Q 009632 522 AS 523 (530)
Q Consensus 522 ~l 523 (530)
.+
T Consensus 646 gL 647 (859)
T KOG1241|consen 646 GL 647 (859)
T ss_pred Hh
Confidence 54
No 12
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.89 E-value=3.5e-19 Score=191.80 Aligned_cols=494 Identities=13% Similarity=0.102 Sum_probs=347.6
Q ss_pred cHHHHHHHhcChhHHHHHHHhhcHHHHHHhhCh---Hhhhhcccccccc-ccC-CchHHHHHHHHHHhcccccCCCccch
Q 009632 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGE---ERTRKELIPFLSE-NND-DDDEVLLAMAEELGVFIPYVGGVEHA 84 (530)
Q Consensus 10 ~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~-~~d-~~~~vr~~~~~~l~~~~~~~~~~~~~ 84 (530)
.+..+++.++++++..+..|...+..++.+.+. .......+|.+.. +.+ +++.+|..++.+|++++.. +.++.
T Consensus 190 aVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~--s~e~r 267 (2102)
T PLN03200 190 GVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQ--SKEAK 267 (2102)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcC--CHHHH
Confidence 567888999999999999999888777654321 1123456777777 443 5668999999999998873 33332
Q ss_pred h-----cchhHHHhhhccc---------chHHHHHHHHHHHHHHhhcCh-----------h-hhh---h--hHHHHHHHH
Q 009632 85 H-----VLLPPLETLCTVE---------ETCVRDKAVESLCRIGSQMRE-----------S-DLV---D--WYIPLVKRL 133 (530)
Q Consensus 85 ~-----~l~~~l~~l~~d~---------~~~vR~~a~~~l~~l~~~~~~-----------~-~~~---~--~l~~~l~~l 133 (530)
. .-+|.|..++..+ +...++.|+.+|++++....+ . +.. . ..++.+...
T Consensus 268 ~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l 347 (2102)
T PLN03200 268 QAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMV 347 (2102)
T ss_pred HHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHh
Confidence 2 2345555555433 245688999999999875422 0 000 0 011112122
Q ss_pred hcCCccchhH----HHHhHhhhhcCCCChH-HH----------------------HHHHHHHHhhcCCCChhHHHHHHHH
Q 009632 134 AAGEWFTARV----SACGLFHIAYPSAPDI-LK----------------------TELRSIYTQLCQDDMPMVRRSAASN 186 (530)
Q Consensus 134 ~~~~~~~~r~----~~~~~l~~l~~~~~~~-~~----------------------~~l~~~l~~l~~d~~~~vR~~a~~~ 186 (530)
..+++...+. .++..+..+..+-.+. .+ .+..+.+..++...+.+++..++.+
T Consensus 348 ~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~a 427 (2102)
T PLN03200 348 FDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRA 427 (2102)
T ss_pred cCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHH
Confidence 2222222221 1122333333322111 11 1233455566666778999999999
Q ss_pred HHHHHhhhcc---hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCch---hhhhccHHHHHHhcCCCCHHHHHH
Q 009632 187 LGKFAATVEP---AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ---DCVAHILPVIVNFSQDKSWRVRYM 260 (530)
Q Consensus 187 l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vr~~ 260 (530)
+..++..-.. .......+|.+.+++.+++..+|..|+..++.++..-... ......+|.+.+++.+++..+|..
T Consensus 428 L~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqee 507 (2102)
T PLN03200 428 LSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKED 507 (2102)
T ss_pred HHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHH
Confidence 9998864221 1223346899999999999999999999999998643321 123568999999999999999999
Q ss_pred HHHHHHHHHHHhCC---cccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHH
Q 009632 261 VANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRS 337 (530)
Q Consensus 261 ~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~ 337 (530)
+++++++++..-.. .......+|.+++++++.+++++..++.+|..+......+ .++.+..++...+..++.
T Consensus 508 AawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~-----~I~~Lv~LLlsdd~~~~~ 582 (2102)
T PLN03200 508 SATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAA-----TISQLTALLLGDLPESKV 582 (2102)
T ss_pred HHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchh-----HHHHHHHHhcCCChhHHH
Confidence 99999999863110 1113467889999999999999999999999998754333 235566667777788888
Q ss_pred HHHHHHHhhccccCHHHH------HHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch---hHHHhhHHHHHHHHhcC
Q 009632 338 ALASVIMGMAPLLGKDAT------IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAED 408 (530)
Q Consensus 338 ~~~~~l~~l~~~~~~~~~------~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~~ 408 (530)
.+++.++.+......+.. ....+|.+..+++.++..++..|+.++.+++..-.. ..+....+|.+..++++
T Consensus 583 ~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss 662 (2102)
T PLN03200 583 HVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTN 662 (2102)
T ss_pred HHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhc
Confidence 888888887665443322 235789999999999999999999999999863221 12345778889999999
Q ss_pred CChHHHHHHHHHHHHHHhhhChhh----HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh--HHhhhhHHHHHh
Q 009632 409 RHWRVRLAIIEYIPLLASQLGVGF----FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE--WAMQHITPQVLE 482 (530)
Q Consensus 409 ~~~~~R~~~~~~l~~l~~~~~~~~----~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~ 482 (530)
.+..+|..+.++++.+......+. .....+|.+.+++++++..++..++.+|..++...... ......++.+.+
T Consensus 663 ~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~ 742 (2102)
T PLN03200 663 NTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTR 742 (2102)
T ss_pred CChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHH
Confidence 999999999999999986443332 22447888999999999999999999999998765322 234678999999
Q ss_pred hccCCChHHHHHHHHHHHHHhhhcChHH
Q 009632 483 MINNPHYLYRMTILRAISLLAPVMGSEI 510 (530)
Q Consensus 483 ~~~d~~~~vr~~a~~~l~~i~~~~~~~~ 510 (530)
++++.+..+|..|++++..++...+.++
T Consensus 743 lLr~G~~~~k~~Aa~AL~~L~~~~~~~~ 770 (2102)
T PLN03200 743 VLREGTLEGKRNAARALAQLLKHFPVDD 770 (2102)
T ss_pred HHHhCChHHHHHHHHHHHHHHhCCChhH
Confidence 9999999999999999999998877544
No 13
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=6.4e-19 Score=165.87 Aligned_cols=503 Identities=17% Similarity=0.171 Sum_probs=361.4
Q ss_pred ChhHHHHHHHhhcHHHHHHhhChHhhhhcccccccc-ccC-CchHHHHHHHHHHhcccccCCCcc-chhcchhHHHhhhc
Q 009632 20 NDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NND-DDDEVLLAMAEELGVFIPYVGGVE-HAHVLLPPLETLCT 96 (530)
Q Consensus 20 ~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d-~~~~vr~~~~~~l~~~~~~~~~~~-~~~~l~~~l~~l~~ 96 (530)
++.+..|.+-+......-...| .+....+.|..-+ ++. .+.-+|.......|.++.++...+ ....++..+..-+.
T Consensus 28 d~~~~v~~~ml~a~~~~~~~~~-~~~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~d~~~~~~~~~~~~~~~ 106 (569)
T KOG1242|consen 28 DRRIDVRGNMLEAGEAAINQHG-DQNVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIVDPRPISIIEILLEELD 106 (569)
T ss_pred CcchhhHHhHHHHHHHHHHhhh-HHHHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhccccCcchhHHHHHHHHhcC
Confidence 4444455444443333322222 2233456666655 332 366778888878888877665433 23445555555566
Q ss_pred ccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChH--HHHHHHHHHHhhcCC
Q 009632 97 VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI--LKTELRSIYTQLCQD 174 (530)
Q Consensus 97 d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~--~~~~l~~~l~~l~~d 174 (530)
.+...+|.....|+..+....... ....+.+.+.++.......-|..+...+..+....+-+ ....++..+.....|
T Consensus 107 tps~~~q~~~~~~l~~~~~~~~~~-~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~d 185 (569)
T KOG1242|consen 107 TPSKSVQRAVSTCLPPLVVLSKGL-SGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIID 185 (569)
T ss_pred CCcHHHHHHHHHHhhhHHHHhhcc-CHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcc
Confidence 778999999999998887765443 23446777777777666677777777777777666544 456677888888888
Q ss_pred CChh-HHHHHHHHHHHHHhhhcc--hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcC
Q 009632 175 DMPM-VRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQ 251 (530)
Q Consensus 175 ~~~~-vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~ 251 (530)
..+. .|+.+..+.......+++ +.+.-.++|.+..-..|....||.+|..+...+...++.... ..++|.+...+.
T Consensus 186 k~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV-K~llpsll~~l~ 264 (569)
T KOG1242|consen 186 KKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV-KLLLPSLLGSLL 264 (569)
T ss_pred cchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh-hHhhhhhHHHHH
Confidence 7655 455677778888888875 344455666677777899999999999999999999887543 335555555444
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCc--ccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhcc
Q 009632 252 DKSWRVRYMVANQLYELCEAVGPE--PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS 329 (530)
Q Consensus 252 d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 329 (530)
+..|+.+..+++.++.++...... .....++|.+.+.+.|++++||+++.+++..++..+.+..+ +.++|.+.+.+.
T Consensus 265 ~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI-~~~ip~Lld~l~ 343 (569)
T KOG1242|consen 265 EAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDI-QKIIPTLLDALA 343 (569)
T ss_pred HHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHH-HHHHHHHHHHhc
Confidence 459999999999999888776543 34678999999999999999999999999999999888774 778899999999
Q ss_pred CCcHHHHHHHHHHHH-hhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhc-hhH---HHhhHHHHHHH
Q 009632 330 DSSQHVRSALASVIM-GMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG-IDL---LSQSLLPAIVE 404 (530)
Q Consensus 330 d~~~~vr~~~~~~l~-~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-~~~---~~~~l~~~l~~ 404 (530)
|++.++....-.... .+..... ......++|++.+-+.+.+...+..++..+++++.... +.+ +.+.++|.+..
T Consensus 344 dp~~~~~e~~~~L~~ttFV~~V~-~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~ 422 (569)
T KOG1242|consen 344 DPSCYTPECLDSLGATTFVAEVD-APSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKE 422 (569)
T ss_pred CcccchHHHHHhhcceeeeeeec-chhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHH
Confidence 988655544322211 1222222 24567899999999999999999999999999998873 332 34678888888
Q ss_pred HhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHH-HHHHHHHHHHHHHHHhChhHHhhhhHHHHHhh
Q 009632 405 LAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYS-IRDAAANNLKRLAEEFGPEWAMQHITPQVLEM 483 (530)
Q Consensus 405 ~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~-Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~ 483 (530)
.+.++.+.+|..+..+++.+.+..|...| ....|-+.+.+.+.... =|..+++.++.+...+|.+.. ..++|.+...
T Consensus 423 ~~~d~~PEvR~vaarAL~~l~e~~g~~~f-~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~~~-~~~~~~~~a~ 500 (569)
T KOG1242|consen 423 NLDDAVPEVRAVAARALGALLERLGEVSF-DDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVEKV-EDILPEILAN 500 (569)
T ss_pred HhcCCChhHHHHHHHHHHHHHHHHHhhcc-cccccHHHHhhccchhhhhhHHHhhhHHHHHhcccchHH-HHHHHHHHHH
Confidence 88899999999999999999999998887 77899998888765443 478888999999988886644 5567766654
Q ss_pred cc--CCChHHHHHHHHHHHHHhhhcCh--HHHHhhHHHHHHhhccCCCCC
Q 009632 484 IN--NPHYLYRMTILRAISLLAPVMGS--EITCSRLLPVVINASKDRYLN 529 (530)
Q Consensus 484 ~~--d~~~~vr~~a~~~l~~i~~~~~~--~~~~~~~~p~l~~~l~D~~~~ 529 (530)
.. ..++++|....+.+.-+-...+. +.+...+++.+.+.+.|..+.
T Consensus 501 ~~~~~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad~de~ 550 (569)
T KOG1242|consen 501 ASSVLIDERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLADNDEK 550 (569)
T ss_pred HhhccchhhhccCeeehhhccchhhhHHhHHHHHHHHHHHHHHhhhcCCc
Confidence 33 34667888888777765544442 345666677777766677664
No 14
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.87 E-value=1.7e-18 Score=168.32 Aligned_cols=512 Identities=13% Similarity=0.154 Sum_probs=351.5
Q ss_pred HHHHHhcChhHHHHHHHhhcHHHHH----HhhChHhhhhcccccccc-ccCCchHHHHHHHHHHhcccccCCCccchhcc
Q 009632 13 VLIDELKNDDIQLRLNSIRRLSTIA----RALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVL 87 (530)
Q Consensus 13 ~l~~~l~~~~~~~R~~a~~~l~~~~----~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l 87 (530)
.|+++|.+.|...|.+|..-|..-. ..+..+.. ..++..+.+ +.|.++||+..|.+|+|.++..++ +.+...+
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe-~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvk-e~~le~~ 86 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSE-RKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVK-EDQLETI 86 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccch-hHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhch-HHHHHHH
Confidence 7899999999999999988776532 11222222 234444444 789999999999999999998777 4555555
Q ss_pred hhHHHhhhcccchHHHHHHHHHHHHHHhhcChh-------hhhhhHHHHHHHHh-c-CCccchhHHHHhHhhhhcCCCCh
Q 009632 88 LPPLETLCTVEETCVRDKAVESLCRIGSQMRES-------DLVDWYIPLVKRLA-A-GEWFTARVSACGLFHIAYPSAPD 158 (530)
Q Consensus 88 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~-------~~~~~l~~~l~~l~-~-~~~~~~r~~~~~~l~~l~~~~~~ 158 (530)
..-|+.-.-.....-|..+.-+|......++|. .....+.|.+.... . .+...++..++..++....+.+.
T Consensus 87 ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ 166 (1233)
T KOG1824|consen 87 VENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGT 166 (1233)
T ss_pred HHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcc
Confidence 555555444556677888888888888777751 11222444443333 2 34566899999998887666554
Q ss_pred ---HHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc
Q 009632 159 ---ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP 235 (530)
Q Consensus 159 ---~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~ 235 (530)
+....++..++.-+..+-..||+.++.+++.++...+...+..-+-..+..+-...+...-...+++++.++...|.
T Consensus 167 ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~ 246 (1233)
T KOG1824|consen 167 LLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGH 246 (1233)
T ss_pred cCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcc
Confidence 34555666666666777788999999999999998887665443333344444444444444568899999988776
Q ss_pred --hhhhhccHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHhCCccc--ccchHHHHHHhcC------------------
Q 009632 236 --QDCVAHILPVIVNFS---QDKSWRVRYMVANQLYELCEAVGPEPT--RMDLVPAYVRLLR------------------ 290 (530)
Q Consensus 236 --~~~~~~~~~~l~~~~---~d~~~~vr~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~------------------ 290 (530)
....+.+.|.+...+ +..+...|+...++++.+....+.+.. ...++..+++.+.
T Consensus 247 r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ 326 (1233)
T KOG1824|consen 247 RFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFL 326 (1233)
T ss_pred hhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhh
Confidence 345677899998888 556678999999999999887665542 2233344333321
Q ss_pred ----------------CCcHHHHHHHHHHHHHHHHhhCH--HHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccC-
Q 009632 291 ----------------DNEAEVRIAAAGKVTKFCRILNP--ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG- 351 (530)
Q Consensus 291 ----------------d~~~~vr~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~- 351 (530)
|-+|.||.+|++++..++..-.. ..+.+.+-|.+..-.++++..||.-++..+-.+....+
T Consensus 327 ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~ 406 (1233)
T KOG1824|consen 327 EDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRP 406 (1233)
T ss_pred hccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCC
Confidence 11388999999999887653211 14456677777777788888899887777655432211
Q ss_pred ---------------HH---HH----HHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch--hHHHhhHHHHHHHHhc
Q 009632 352 ---------------KD---AT----IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVELAE 407 (530)
Q Consensus 352 ---------------~~---~~----~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~ 407 (530)
.. .. ...++..+...+++.+-..|..++..|..++..+.. ......++|.+...+.
T Consensus 407 ~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~ 486 (1233)
T KOG1824|consen 407 VIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLN 486 (1233)
T ss_pred CcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcC
Confidence 11 11 234455555556666666788888888888776542 2234678888888888
Q ss_pred CCC--hHHHHHHHHHHHHHHhhhChhhHHH---HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh---------HHh
Q 009632 408 DRH--WRVRLAIIEYIPLLASQLGVGFFDD---KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE---------WAM 473 (530)
Q Consensus 408 ~~~--~~~R~~~~~~l~~l~~~~~~~~~~~---~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---------~~~ 473 (530)
|.+ ...+..++.++..+....+++.|.+ .+.|.+.....|+-+.|-..|+.+.+++++..-+. ...
T Consensus 487 DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v 566 (1233)
T KOG1824|consen 487 DKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYV 566 (1233)
T ss_pred CccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhH
Confidence 864 5688889999988888888887764 47888888999999999999999999999876321 112
Q ss_pred hhhHHHHHhh--ccCCChHHHHHHHHHHHHHhhhcCh--HHHHhhHHHHHHhhccCC
Q 009632 474 QHITPQVLEM--INNPHYLYRMTILRAISLLAPVMGS--EITCSRLLPVVINASKDR 526 (530)
Q Consensus 474 ~~i~~~l~~~--~~d~~~~vr~~a~~~l~~i~~~~~~--~~~~~~~~p~l~~~l~D~ 526 (530)
..++.+..+. .+|.+-+||+.|+.++|.++..+|. ....+..+|.+.+-+..+
T Consensus 567 ~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nE 623 (1233)
T KOG1824|consen 567 KTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNE 623 (1233)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhch
Confidence 3344444443 3578999999999999999998882 223566667666655543
No 15
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.87 E-value=3.7e-19 Score=180.21 Aligned_cols=485 Identities=18% Similarity=0.168 Sum_probs=351.3
Q ss_pred hhHHHHHHHhhcHHHHHHhhChHhhhhcccccccc-ccCCchHHHHHHHHHHhcccccCCCccchhcchhHHHhhhcccc
Q 009632 21 DDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEE 99 (530)
Q Consensus 21 ~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~ 99 (530)
.+...|..+++.+-.+ ...|. +.. .+.+.+.. +.+++.+.++.+...+..+.. ..++........+..-+++++
T Consensus 18 ~~~~~~~~~l~kli~~-~~~G~-~~~-~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~--~~~~~~~l~~n~l~kdl~~~n 92 (526)
T PF01602_consen 18 IDISKKKEALKKLIYL-MMLGY-DIS-FLFMEVIKLISSKDLELKRLGYLYLSLYLH--EDPELLILIINSLQKDLNSPN 92 (526)
T ss_dssp THHHHHHHHHHHHHHH-HHTT----G-STHHHHHCTCSSSSHHHHHHHHHHHHHHTT--TSHHHHHHHHHHHHHHHCSSS
T ss_pred CCHHHHHHHHHHHHHH-HHcCC-CCc-hHHHHHHHHhCCCCHHHHHHHHHHHHHHhh--cchhHHHHHHHHHHHhhcCCC
Confidence 3777888787766654 33443 232 33444334 567888999988888888766 233444455666767778899
Q ss_pred hHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcCCCChhH
Q 009632 100 TCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMV 179 (530)
Q Consensus 100 ~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~d~~~~v 179 (530)
+.+|..|+.+++.+. .....+.+.+.+..+..++++.+|..|+.++..+....++.....+.+.+..++.|+++.|
T Consensus 93 ~~~~~lAL~~l~~i~----~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~~~V 168 (526)
T PF01602_consen 93 PYIRGLALRTLSNIR----TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDKDPSV 168 (526)
T ss_dssp HHHHHHHHHHHHHH-----SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSSHHH
T ss_pred HHHHHHHHhhhhhhc----ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCCcchh
Confidence 999999999999986 3345566888889999999999999999999888876443322227899999999999999
Q ss_pred HHHHHHHHHHHHhhhcch--hhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcCCCCHHH
Q 009632 180 RRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRV 257 (530)
Q Consensus 180 R~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~v 257 (530)
+.+|+.++..+ +.-++. ...+.++..+.+.+.+.++-.+...++.+..++..-........+++.+...+++.++.|
T Consensus 169 ~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V 247 (526)
T PF01602_consen 169 VSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSV 247 (526)
T ss_dssp HHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHH
Confidence 99999999998 222222 345666777777778889989988888888766543222111457888888888888889
Q ss_pred HHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHH
Q 009632 258 RYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRS 337 (530)
Q Consensus 258 r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~ 337 (530)
+..++.++..+.. .......+++.+..++.++++++|..++.++..++... +..+. .....+..+..+.+..+|.
T Consensus 248 ~~e~~~~i~~l~~---~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~-~~~v~-~~~~~~~~l~~~~d~~Ir~ 322 (526)
T PF01602_consen 248 VYEAIRLIIKLSP---SPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN-PPAVF-NQSLILFFLLYDDDPSIRK 322 (526)
T ss_dssp HHHHHHHHHHHSS---SHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC-HHHHG-THHHHHHHHHCSSSHHHHH
T ss_pred HHHHHHHHHHhhc---chHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc-chhhh-hhhhhhheecCCCChhHHH
Confidence 8888887775442 22235678899999999999999999999999998765 22221 2222222334488899999
Q ss_pred HHHHHHHhhccccCHHHHHHhHHHHHHHhhcCC-ChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHH
Q 009632 338 ALASVIMGMAPLLGKDATIEQLLPIFLSLLKDE-FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLA 416 (530)
Q Consensus 338 ~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~ 416 (530)
.+++.+..++.. .-...+++.+...+.+. +.++|..++..++.++..+... .+.+++.+.+++...+..++..
T Consensus 323 ~~l~lL~~l~~~----~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~--~~~~v~~l~~ll~~~~~~~~~~ 396 (526)
T PF01602_consen 323 KALDLLYKLANE----SNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPD--AEWYVDTLLKLLEISGDYVSNE 396 (526)
T ss_dssp HHHHHHHHH--H----HHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSS--HHHHHHHHHHHHHCTGGGCHCH
T ss_pred HHHHHHhhcccc----cchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCch--HHHHHHHHHHhhhhccccccch
Confidence 999999888753 33445777777778554 7889999999999999887543 2567788888888887888888
Q ss_pred HHHHHHHHHhhhChhhHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhccCCChHHHHHH
Q 009632 417 IIEYIPLLASQLGVGFFDDKLGALCMQWLQD-KVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTI 495 (530)
Q Consensus 417 ~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d-~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a 495 (530)
++..+..+....... ....+..+...+.+ ..+.++..++.++|+.............++..+.+.+.+.+..+|..+
T Consensus 397 ~~~~i~~ll~~~~~~--~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~~~~~vk~~i 474 (526)
T PF01602_consen 397 IINVIRDLLSNNPEL--REKILKKLIELLEDISSPEALAAAIWILGEYGELIENTESAPDILRSLIENFIEESPEVKLQI 474 (526)
T ss_dssp HHHHHHHHHHHSTTT--HHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHhhcChhh--hHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhccccHHHHHHH
Confidence 888888887653322 34456666776665 667899999999999988876511345677788888888889999999
Q ss_pred HHHHHHHhhhcChHHHHhhHHHHHHhhcc--CCCC
Q 009632 496 LRAISLLAPVMGSEITCSRLLPVVINASK--DRYL 528 (530)
Q Consensus 496 ~~~l~~i~~~~~~~~~~~~~~p~l~~~l~--D~~~ 528 (530)
+.++.++....+.....+.+...+..+.. +..+
T Consensus 475 lt~~~Kl~~~~~~~~~~~~i~~~~~~~~~~~s~~~ 509 (526)
T PF01602_consen 475 LTALAKLFKRNPENEVQNEILQFLLSLATEDSSDP 509 (526)
T ss_dssp HHHHHHHHHHSCSTTHHHHHHHHHHCHHHHS-SSH
T ss_pred HHHHHHHHhhCCchhhHHHHHHHHHHHhccCCCCH
Confidence 99999999887765556788888888877 5444
No 16
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=3.1e-18 Score=161.31 Aligned_cols=457 Identities=16% Similarity=0.139 Sum_probs=343.8
Q ss_pred cccccc-ccCCchHHHHHHHHHHhcccccCCCccchhcchhHHHhhhcc-cchHHHHHHHHHHHHHHhhcChhhhhhh-H
Q 009632 50 IPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTV-EETCVRDKAVESLCRIGSQMRESDLVDW-Y 126 (530)
Q Consensus 50 ~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d-~~~~vR~~a~~~l~~l~~~~~~~~~~~~-l 126 (530)
++++.. -.|..+.+|.....+.......- +.+....+.|.+.+.++. .++.+|+.-+--.+.++..+...+...+ +
T Consensus 19 ~~~~~~~g~d~~~~v~~~ml~a~~~~~~~~-~~~~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~d~~~~~~ 97 (569)
T KOG1242|consen 19 LLFLVSAGEDRRIDVRGNMLEAGEAAINQH-GDQNVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIVDPRPISI 97 (569)
T ss_pred ceeecccCCCcchhhHHhHHHHHHHHHHhh-hHHHHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhccccCcchhHH
Confidence 455544 55667778877777765444432 356677888888877654 4888999988888888887765443322 4
Q ss_pred HHHHHHHhcCCccchhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhH-HHHHH
Q 009632 127 IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLK-TDIMS 205 (530)
Q Consensus 127 ~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~-~~l~~ 205 (530)
+..+..-...++..+|.+...++..+...........+.+.+.++++..+..-|..+...+..+....+-+.+. ..++.
T Consensus 98 ~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~ 177 (569)
T KOG1242|consen 98 IEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLD 177 (569)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHH
Confidence 45555555667788999888888877666555556677777888888778888899988888888766654443 35788
Q ss_pred HHHHhhcCCchh-HHHHHHHHHHHHhhhcCc--hhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchH
Q 009632 206 IFEDLTQDDQDS-VRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLV 282 (530)
Q Consensus 206 ~l~~~~~d~~~~-vr~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~ 282 (530)
.+.+.+.|.+.. .|+.+.-+.......+|+ +.+.-.++|.+.....|....||.++..+...+...+.... ...++
T Consensus 178 ~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~a-VK~ll 256 (569)
T KOG1242|consen 178 NLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYA-VKLLL 256 (569)
T ss_pred HHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcch-hhHhh
Confidence 888888888654 555677777777788875 44555566666777789999999999999998888876554 35567
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH--HHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHH
Q 009632 283 PAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360 (530)
Q Consensus 283 ~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~ 360 (530)
|.++..+.+..|.-+.++++.++.+....+.. ...+.++|.+.+.+.|..+.+|.++.+++..++....... ...+.
T Consensus 257 psll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d-I~~~i 335 (569)
T KOG1242|consen 257 PSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD-IQKII 335 (569)
T ss_pred hhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-HHHHH
Confidence 77777666668999999999999776654433 4568899999999999999999999999999988776544 67788
Q ss_pred HHHHHhhcCCChHHHHHHHHhhHH-hhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhh-Chh---hHHH
Q 009632 361 PIFLSLLKDEFPDVRLNIISKLDQ-VNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-GVG---FFDD 435 (530)
Q Consensus 361 ~~l~~~l~d~~~~vr~~a~~~l~~-l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~-~~~---~~~~ 435 (530)
|.+..++.|+...+..+.-..... ++..+.+. ...-++|.+.+-+.+.+...+..++..+++++... ++. .|..
T Consensus 336 p~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~p-sLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~ 414 (569)
T KOG1242|consen 336 PTLLDALADPSCYTPECLDSLGATTFVAEVDAP-SLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLP 414 (569)
T ss_pred HHHHHHhcCcccchHHHHHhhcceeeeeeecch-hHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHH
Confidence 999999999986665544332221 22222222 23568888888888889999999999999999988 332 3567
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhccCC-ChHHHHHHHHHHHHHhhhcChHHH
Q 009632 436 KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNP-HYLYRMTILRAISLLAPVMGSEIT 511 (530)
Q Consensus 436 ~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~-~~~vr~~a~~~l~~i~~~~~~~~~ 511 (530)
.++|.+.+.+.|+.++||..+.++++.+.+..|.... ...+|.+.....+. ...-|..+.+.++.++...+-+.+
T Consensus 415 ~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f-~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~~~ 490 (569)
T KOG1242|consen 415 SLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF-DDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVEKV 490 (569)
T ss_pred HHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc-cccccHHHHhhccchhhhhhHHHhhhHHHHHhcccchHH
Confidence 7899999999999999999999999999999997755 78899999988765 445588999999999888775543
No 17
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.87 E-value=4e-18 Score=183.79 Aligned_cols=515 Identities=12% Similarity=0.115 Sum_probs=352.7
Q ss_pred cHHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHh------hhhcccccccc-ccCC---chHHHHHHHHHHhcccccCC
Q 009632 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEER------TRKELIPFLSE-NNDD---DDEVLLAMAEELGVFIPYVG 79 (530)
Q Consensus 10 ~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~------~~~~l~~~l~~-~~d~---~~~vr~~~~~~l~~~~~~~~ 79 (530)
.+..|++-|++.++..|..|...|..++..-..+. .....+|.|.. +.+. +..++..++.+|.++...-+
T Consensus 100 aIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~e 179 (2102)
T PLN03200 100 CIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTD 179 (2102)
T ss_pred ChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCcc
Confidence 46678888899999999999999999876421011 12445666655 3333 33466667778888876433
Q ss_pred Cc--c-chhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcCh---hhhhhhHHHHHHHHhcC-CccchhHHHHhHhhhh
Q 009632 80 GV--E-HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE---SDLVDWYIPLVKRLAAG-EWFTARVSACGLFHIA 152 (530)
Q Consensus 80 ~~--~-~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~l~~~-~~~~~r~~~~~~l~~l 152 (530)
+. . .....+|.+..+++++++.++..|+.++..++...++ .......+|.+..++.+ ++..+|..|+.++..+
T Consensus 180 n~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nL 259 (2102)
T PLN03200 180 GFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEAL 259 (2102)
T ss_pred chHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHH
Confidence 21 0 1234778888888889999999999999888766442 22334467778788865 4568899999999888
Q ss_pred cCCCChH----HHHHHHHHHHhhcCCCC---------hhHHHHHHHHHHHHHhhhcc-----------h-h-h-------
Q 009632 153 YPSAPDI----LKTELRSIYTQLCQDDM---------PMVRRSAASNLGKFAATVEP-----------A-H-L------- 199 (530)
Q Consensus 153 ~~~~~~~----~~~~l~~~l~~l~~d~~---------~~vR~~a~~~l~~l~~~~~~-----------~-~-~------- 199 (530)
+....+. .....+|.|.+++..++ ...++.+..+|++++....+ . . .
T Consensus 260 As~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~g 339 (2102)
T PLN03200 260 SSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLG 339 (2102)
T ss_pred hcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHh
Confidence 8753322 12334566666665444 33478888888887763111 0 0 0
Q ss_pred -H-------------------HHHHHHHHHhhcCCc------------------------------------------hh
Q 009632 200 -K-------------------TDIMSIFEDLTQDDQ------------------------------------------DS 217 (530)
Q Consensus 200 -~-------------------~~l~~~l~~~~~d~~------------------------------------------~~ 217 (530)
. ..+.+.+.+++.+.+ .+
T Consensus 340 ALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~e 419 (2102)
T PLN03200 340 ALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATAD 419 (2102)
T ss_pred hHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHH
Confidence 0 001233444444333 33
Q ss_pred HHHHHHHHHHHHhhhcCc---hhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC---cccccchHHHHHHhcCC
Q 009632 218 VRLLAVEGCAALGKLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRD 291 (530)
Q Consensus 218 vr~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d 291 (530)
++..++.++.+++..-.. .......+|.+.+++.+.+..++..++..++.++..... .......+|.+.+++..
T Consensus 420 vQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s 499 (2102)
T PLN03200 420 VQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLET 499 (2102)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC
Confidence 444444444444432111 011233788888888888889999999999888753211 11234678999999999
Q ss_pred CcHHHHHHHHHHHHHHHHhhCH-HH-H-HhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhc
Q 009632 292 NEAEVRIAAAGKVTKFCRILNP-EL-A-IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK 368 (530)
Q Consensus 292 ~~~~vr~~a~~~l~~~~~~~~~-~~-~-~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~ 368 (530)
+++.+|+.|+.++..++..-.. .. + ....+|.+.+++++.+++++..++.++..+...-..+ .++.+..++.
T Consensus 500 ~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~-----~I~~Lv~LLl 574 (2102)
T PLN03200 500 GSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAA-----TISQLTALLL 574 (2102)
T ss_pred CCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchh-----HHHHHHHHhc
Confidence 9999999999999999863211 11 2 2356788888888889999999999998886543322 2255667777
Q ss_pred CCChHHHHHHHHhhHHhhhhhchhHH------HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCh---hhHHHHHHH
Q 009632 369 DEFPDVRLNIISKLDQVNQVIGIDLL------SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGA 439 (530)
Q Consensus 369 d~~~~vr~~a~~~l~~l~~~~~~~~~------~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~---~~~~~~~~~ 439 (530)
.+++.++..++..++.+......+.. ...-+|.+.+++++++..++..|+.++..++..-.. .......+|
T Consensus 575 sdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIp 654 (2102)
T PLN03200 575 GDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIIN 654 (2102)
T ss_pred CCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHH
Confidence 77888999999988888664443321 135789999999999999999999999999863221 123345788
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHHhChh----HHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcCh--HHHHh
Q 009632 440 LCMQWLQDKVYSIRDAAANNLKRLAEEFGPE----WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS--EITCS 513 (530)
Q Consensus 440 ~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~----~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~--~~~~~ 513 (530)
.+..++.+....++..++.+|+.+....... ......+|.|.+++++++.+++..++.++.+++..-.. +....
T Consensus 655 PLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~ 734 (2102)
T PLN03200 655 PCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAE 734 (2102)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhc
Confidence 9999999999999999999999999743322 12356899999999999999999999999999886542 33456
Q ss_pred hHHHHHHhhccCCCCC
Q 009632 514 RLLPVVINASKDRYLN 529 (530)
Q Consensus 514 ~~~p~l~~~l~D~~~~ 529 (530)
..+|.|.+++....+.
T Consensus 735 ~~I~~Lv~lLr~G~~~ 750 (2102)
T PLN03200 735 DIILPLTRVLREGTLE 750 (2102)
T ss_pred CcHHHHHHHHHhCChH
Confidence 6688888888776653
No 18
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.87 E-value=2.7e-19 Score=181.21 Aligned_cols=472 Identities=19% Similarity=0.144 Sum_probs=350.0
Q ss_pred CcHHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhcccccccc-ccCCchHHHHHHHHHHhcccccCCCccchhcc
Q 009632 9 YPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVL 87 (530)
Q Consensus 9 ~~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l 87 (530)
+-+...++.+.++|...|..+.-.+..+... .++ ..-..++.+.. +.++++.+|..|-.+++++. .++..+.+
T Consensus 42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~-~~~-~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~----~~~~~~~l 115 (526)
T PF01602_consen 42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHE-DPE-LLILIINSLQKDLNSPNPYIRGLALRTLSNIR----TPEMAEPL 115 (526)
T ss_dssp STHHHHHCTCSSSSHHHHHHHHHHHHHHTTT-SHH-HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-----SHHHHHHH
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhc-chh-HHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc----ccchhhHH
Confidence 4567778888899999998888777766432 222 22334555555 88999999999999999875 47788889
Q ss_pred hhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCCh---HHHHHH
Q 009632 88 LPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD---ILKTEL 164 (530)
Q Consensus 88 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~---~~~~~l 164 (530)
.+.+..++.|+++.||+.|+.++.++.+..++..... +.+.+..++.|+++.++..|+.++..+ +.-++ ...+.+
T Consensus 116 ~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~ 193 (526)
T PF01602_consen 116 IPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKL 193 (526)
T ss_dssp HHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHH
Confidence 9999999999999999999999999998854432223 788888888988999999999999888 22222 235566
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHH
Q 009632 165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244 (530)
Q Consensus 165 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 244 (530)
.+.+..++.+.+|..+..+++.+..++..-........+++.+..++.+.++.|.-.++.++..+... ......+.+
T Consensus 194 ~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~---~~~~~~~~~ 270 (526)
T PF01602_consen 194 IRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPS---PELLQKAIN 270 (526)
T ss_dssp HHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS---HHHHHHHHH
T ss_pred HHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcc---hHHHHhhHH
Confidence 66667777899999999988888876543222221146888888888888888998888888765542 235667888
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhH
Q 009632 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCV 324 (530)
Q Consensus 245 ~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l 324 (530)
.+..++.++++.+|..++.++..++....+... .....+..+..++++.+|..++..+..++..-.. ..+++.+
T Consensus 271 ~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~----~~Il~eL 344 (526)
T PF01602_consen 271 PLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF--NQSLILFFLLYDDDPSIRKKALDLLYKLANESNV----KEILDEL 344 (526)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG--THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHH----HHHHHHH
T ss_pred HHHHHhhcccchhehhHHHHHHHhhcccchhhh--hhhhhhheecCCCChhHHHHHHHHHhhcccccch----hhHHHHH
Confidence 899999999999999999999988765421111 2223333444588899999999999888864433 3445555
Q ss_pred hHhccC-CcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHH
Q 009632 325 KELSSD-SSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV 403 (530)
Q Consensus 325 ~~~~~d-~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~ 403 (530)
.+.+.+ .+..+|..++..++.++..... .....++.+.+++......+...++..+..+..... .....++..+.
T Consensus 345 ~~~l~~~~d~~~~~~~i~~I~~la~~~~~--~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~--~~~~~~l~~L~ 420 (526)
T PF01602_consen 345 LKYLSELSDPDFRRELIKAIGDLAEKFPP--DAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNP--ELREKILKKLI 420 (526)
T ss_dssp HHHHHHC--HHHHHHHHHHHHHHHHHHGS--SHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHST--TTHHHHHHHHH
T ss_pred HHHHHhccchhhhhhHHHHHHHHHhccCc--hHHHHHHHHHHhhhhccccccchHHHHHHHHhhcCh--hhhHHHHHHHH
Confidence 555533 3677999999999999876642 234566888888888888888888888888775532 22345677777
Q ss_pred HHhcC-CChHHHHHHHHHHHHHHhhhCh-hhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHH
Q 009632 404 ELAED-RHWRVRLAIIEYIPLLASQLGV-GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVL 481 (530)
Q Consensus 404 ~~~~~-~~~~~R~~~~~~l~~l~~~~~~-~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~ 481 (530)
+.+.+ .+...+..+++.+|..+..... + ....++..+.+...+....||..++.++..+....+.....+.+...+.
T Consensus 421 ~~l~~~~~~~~~~~~~wilGEy~~~~~~~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~~~i~~~~~ 499 (526)
T PF01602_consen 421 ELLEDISSPEALAAAIWILGEYGELIENTE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEVQNEILQFLL 499 (526)
T ss_dssp HHHTSSSSHHHHHHHHHHHHHHCHHHTTTT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHhhhcccCCcccccc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhhHHHHHHHHH
Confidence 77666 5678999999999999888775 3 5566778888888888899999999999999988765434457888888
Q ss_pred hhcc--CCChHHHHHHHHHHHHH
Q 009632 482 EMIN--NPHYLYRMTILRAISLL 502 (530)
Q Consensus 482 ~~~~--d~~~~vr~~a~~~l~~i 502 (530)
+..+ +.+.+||+.|.+.+.-+
T Consensus 500 ~~~~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 500 SLATEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp CHHHHS-SSHHHHHHHHHHHHHH
T ss_pred HHhccCCCCHHHHHHHHHHHHHH
Confidence 8888 88999999999877644
No 19
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.86 E-value=5.6e-17 Score=149.86 Aligned_cols=495 Identities=14% Similarity=0.099 Sum_probs=337.3
Q ss_pred HHHHhhcHHHHHHhhChHhhhh----cccccccc--ccCCchHHHHHHHHHHhc---ccc-cCCCccchhcchhHHHhhh
Q 009632 26 RLNSIRRLSTIARALGEERTRK----ELIPFLSE--NNDDDDEVLLAMAEELGV---FIP-YVGGVEHAHVLLPPLETLC 95 (530)
Q Consensus 26 R~~a~~~l~~~~~~~~~~~~~~----~l~~~l~~--~~d~~~~vr~~~~~~l~~---~~~-~~~~~~~~~~l~~~l~~l~ 95 (530)
...++..++-..+...|+.... -+...... -+..+..+|.++-.+|-+ +++ ....+...+.++...++..
T Consensus 151 k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceat 230 (858)
T COG5215 151 KCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEAT 230 (858)
T ss_pred HHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhc
Confidence 4444555555555544533321 12222222 234567889888888854 222 1122445677888888888
Q ss_pred cccchHHHHHHHHHHHHHHhhcCh---hhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCC----------CC---hH
Q 009632 96 TVEETCVRDKAVESLCRIGSQMRE---SDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPS----------AP---DI 159 (530)
Q Consensus 96 ~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~----------~~---~~ 159 (530)
+.++.++..+|..|+.+|+...-+ ...++.+..+..+..+++++.+...+....+.+++. ++ .+
T Consensus 231 q~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~q 310 (858)
T COG5215 231 QGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQ 310 (858)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchh
Confidence 999999999999999999875322 233445566666777888888888887777554431 11 11
Q ss_pred -------HHHHHHHHHHhhcC-------CCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHH
Q 009632 160 -------LKTELRSIYTQLCQ-------DDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEG 225 (530)
Q Consensus 160 -------~~~~l~~~l~~l~~-------d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~ 225 (530)
...+++|.++.++. +.+|.+-.+|..+|.-+++..++....+ ++.+..+-+..+++.-|.+|+-+
T Consensus 311 n~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~p-Vl~FvEqni~~~~w~nreaavmA 389 (858)
T COG5215 311 NHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRP-VLGFVEQNIRSESWANREAAVMA 389 (858)
T ss_pred hcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHH-HHHHHHHhccCchhhhHHHHHHH
Confidence 24668888888764 4589999999999999999887755444 77788888999999999999999
Q ss_pred HHHHhhhcCc---hhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC----cccccchHHHHHHhcCCCcHHHHH
Q 009632 226 CAALGKLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP----EPTRMDLVPAYVRLLRDNEAEVRI 298 (530)
Q Consensus 226 l~~l~~~~~~---~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~d~~~~vr~ 298 (530)
++++...-.+ ..+.++.+|.+.....|+.-.|+...+++++.++..+.. +......+...+..+.|. |.+-.
T Consensus 390 fGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~-p~~~~ 468 (858)
T COG5215 390 FGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMDC-PFRSI 468 (858)
T ss_pred hhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhcc-chHHh
Confidence 9999875433 245777899999999999988999999999999987543 322233344444555555 55666
Q ss_pred HHHHHHHHHHHhhCHH---------HHHhhhhHhHhHh--ccCCcHHHHHHHHHHHHhhccccCHH------HHHHhHHH
Q 009632 299 AAAGKVTKFCRILNPE---------LAIQHILPCVKEL--SSDSSQHVRSALASVIMGMAPLLGKD------ATIEQLLP 361 (530)
Q Consensus 299 ~a~~~l~~~~~~~~~~---------~~~~~l~~~l~~~--~~d~~~~vr~~~~~~l~~l~~~~~~~------~~~~~l~~ 361 (530)
++.+....+...+.+. .+...++..+.+. ..+.+...|.+..++++.+...+... .+......
T Consensus 469 ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~ 548 (858)
T COG5215 469 NCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSK 548 (858)
T ss_pred hhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Confidence 6666666666555432 1122222222221 12455678888999998887665432 12222222
Q ss_pred HHHHhhc---------CC--ChHHHHHHHHhhHHhhhhhch--hHHHhhHHHHHHHHhcCCC-hHHHHHHHHHHHHHHhh
Q 009632 362 IFLSLLK---------DE--FPDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVELAEDRH-WRVRLAIIEYIPLLASQ 427 (530)
Q Consensus 362 ~l~~~l~---------d~--~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~~~~-~~~R~~~~~~l~~l~~~ 427 (530)
-+-.+++ |. ..++....+..+..++...++ +...+.++..+.+.+++.+ ..+-.....+++.++..
T Consensus 549 kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~s 628 (858)
T COG5215 549 KLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTS 628 (858)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHH
Confidence 2222221 11 235666666777777777666 4555678888888877763 44556677788888888
Q ss_pred hChhh--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHH--hhhhHHHHHhhccCC--ChHHHHHHHHHHHH
Q 009632 428 LGVGF--FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA--MQHITPQVLEMINNP--HYLYRMTILRAISL 501 (530)
Q Consensus 428 ~~~~~--~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~--~~~i~~~l~~~~~d~--~~~vr~~a~~~l~~ 501 (530)
++..| +.+.++|++.+.++..+..|-..|+..+|.++..+|.++. .+.++..|.++++.+ +.+++-..+..+|.
T Consensus 629 l~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgD 708 (858)
T COG5215 629 LEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGD 708 (858)
T ss_pred HHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHH
Confidence 87765 5688999999999999999999999999999999987754 366788888888776 66789999999999
Q ss_pred HhhhcChHH--HHhhHHHHHHhh
Q 009632 502 LAPVMGSEI--TCSRLLPVVINA 522 (530)
Q Consensus 502 i~~~~~~~~--~~~~~~p~l~~~ 522 (530)
++.++|..+ +++-++-.+.+.
T Consensus 709 IAlaiga~F~~YL~~im~L~qqa 731 (858)
T COG5215 709 IALAIGANFESYLDMIMMLFQQA 731 (858)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHH
Confidence 999998653 456566555553
No 20
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.86 E-value=3.1e-18 Score=157.84 Aligned_cols=426 Identities=15% Similarity=0.103 Sum_probs=316.3
Q ss_pred HhhhcccchHHHHHHHHHHHHHHhhcChh----hhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCCh---HHHHHH
Q 009632 92 ETLCTVEETCVRDKAVESLCRIGSQMRES----DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD---ILKTEL 164 (530)
Q Consensus 92 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~---~~~~~l 164 (530)
...++|+-.+-|++|+--+.++++.+... .+.+.+..+.......++...|..+...++..+-.++. .+.+.+
T Consensus 6 ~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~i 85 (675)
T KOG0212|consen 6 ARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKI 85 (675)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHh
Confidence 34457788888888888888888866432 23333333555666666555555433333333222332 278999
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHHHhhhcch--hhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCch----hh
Q 009632 165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ----DC 238 (530)
Q Consensus 165 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~----~~ 238 (530)
++.++.+++|++..||..||+++.++++....+ .+.+.++..+.++..|.+..||.. .+.+..+.+-...+ -.
T Consensus 86 v~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~-aeLLdRLikdIVte~~~tFs 164 (675)
T KOG0212|consen 86 VPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGG-AELLDRLIKDIVTESASTFS 164 (675)
T ss_pred hHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccH-HHHHHHHHHHhccccccccC
Confidence 999999999999999999999999999988774 456789999999999999999874 55666666554322 12
Q ss_pred hhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcc--cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHH-
Q 009632 239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL- 315 (530)
Q Consensus 239 ~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~- 315 (530)
.+.++|.+.+-+.+.++.+|......+..+-..-+-+. +...+++.+.+++.|++++||.-+-.+++.+...+..+.
T Consensus 165 L~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~ 244 (675)
T KOG0212|consen 165 LPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPS 244 (675)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCcc
Confidence 56689999999999999999999999887765433222 356789999999999999999999999998888764331
Q ss_pred --HHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHH--HHHhHHHHHHHhhcCCCh-HHHHHHHHhhHHhhhhhc
Q 009632 316 --AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQLLPIFLSLLKDEFP-DVRLNIISKLDQVNQVIG 390 (530)
Q Consensus 316 --~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~ 390 (530)
-.+.+.+.+..-+..+++.++..++.++..+.+..|.+. +...++..++.++.|... .++..+...-+.+...++
T Consensus 245 s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s 324 (675)
T KOG0212|consen 245 SMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVS 324 (675)
T ss_pred ccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHh
Confidence 124566777777788999999999999999998888654 355667777788888776 577777666655665555
Q ss_pred hhHH-----HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhH--HHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Q 009632 391 IDLL-----SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF--DDKLGALCMQWLQDKVYSIRDAAANNLKRL 463 (530)
Q Consensus 391 ~~~~-----~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~--~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l 463 (530)
.+.. ...++..+.+.+++.....|.+++.|+..+-...+.+.+ .+.+++.+++-+.|+...|-..++..++.+
T Consensus 325 ~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i 404 (675)
T KOG0212|consen 325 SERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASI 404 (675)
T ss_pred hhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHH
Confidence 4322 247888999999999999999999999999988877664 467999999999999999999999999999
Q ss_pred HHHhChhHHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcChHHHHhhHHHHH
Q 009632 464 AEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVV 519 (530)
Q Consensus 464 ~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~p~l 519 (530)
+......-. ..++..+.+++.....-++..+.-.+.+++..+.++.+...+-.++
T Consensus 405 ~~s~~~~~~-~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~IYr~~a~IL 459 (675)
T KOG0212|consen 405 CSSSNSPNL-RKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAERIYRSIADIL 459 (675)
T ss_pred hcCcccccH-HHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHHHHHHHHHHHH
Confidence 987543211 3455666667766666677777777777777777665544443333
No 21
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.85 E-value=2.2e-19 Score=189.24 Aligned_cols=275 Identities=21% Similarity=0.186 Sum_probs=219.2
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccH
Q 009632 164 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHIL 243 (530)
Q Consensus 164 l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 243 (530)
-++.|...++|+++.||+.|+..|+.+.. +..++.|.+.+.|+++.||..|+.+|..+....+. .
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~--------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~-------~ 686 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP--------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP-------A 686 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc--------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc-------h
Confidence 44677788899999999999999998742 45778888999999999999999999888654432 2
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHh
Q 009632 244 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPC 323 (530)
Q Consensus 244 ~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~ 323 (530)
+.+...++++++.||..++..|+.+.. .. ...+...+.|+++.||..|+.+|+.+.. .+.
T Consensus 687 ~~L~~~L~~~d~~VR~~A~~aL~~~~~--------~~-~~~l~~~L~D~d~~VR~~Av~aL~~~~~-----------~~~ 746 (897)
T PRK13800 687 PALRDHLGSPDPVVRAAALDVLRALRA--------GD-AALFAAALGDPDHRVRIEAVRALVSVDD-----------VES 746 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhcc--------CC-HHHHHHHhcCCCHHHHHHHHHHHhcccC-----------cHH
Confidence 456677888999999999999988641 11 2456788999999999999999997621 133
Q ss_pred HhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHH
Q 009632 324 VKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV 403 (530)
Q Consensus 324 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~ 403 (530)
+...+.|+++.||..++..++.+...-. ...+.+..+++|+++.||..|+.+|+.+... +.+.+.+.
T Consensus 747 l~~~l~D~~~~VR~~aa~aL~~~~~~~~------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~-------~~~~~~l~ 813 (897)
T PRK13800 747 VAGAATDENREVRIAVAKGLATLGAGGA------PAGDAVRALTGDPDPLVRAAALAALAELGCP-------PDDVAAAT 813 (897)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhccccc------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc-------chhHHHHH
Confidence 4567899999999999999998864321 1256788999999999999999999887432 23445577
Q ss_pred HHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhh
Q 009632 404 ELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEM 483 (530)
Q Consensus 404 ~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~ 483 (530)
..++|++|.+|..|+.+|+.+.. +.-++.+..+++|+++.||..|+.+|+.+. + .....+.|...
T Consensus 814 ~aL~d~d~~VR~~Aa~aL~~l~~--------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~---~----~~~a~~~L~~a 878 (897)
T PRK13800 814 AALRASAWQVRQGAARALAGAAA--------DVAVPALVEALTDPHLDVRKAAVLALTRWP---G----DPAARDALTTA 878 (897)
T ss_pred HHhcCCChHHHHHHHHHHHhccc--------cchHHHHHHHhcCCCHHHHHHHHHHHhccC---C----CHHHHHHHHHH
Confidence 77899999999999999987641 234588889999999999999999999851 1 23467788889
Q ss_pred ccCCChHHHHHHHHHHHH
Q 009632 484 INNPHYLYRMTILRAISL 501 (530)
Q Consensus 484 ~~d~~~~vr~~a~~~l~~ 501 (530)
++|++..||..|.++|..
T Consensus 879 l~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 879 LTDSDADVRAYARRALAH 896 (897)
T ss_pred HhCCCHHHHHHHHHHHhh
Confidence 999999999999999864
No 22
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.85 E-value=2.9e-17 Score=159.90 Aligned_cols=506 Identities=17% Similarity=0.171 Sum_probs=353.7
Q ss_pred HHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhcccccccc--ccCCchHHHHHHHHHHhcccccCCC--ccchhc
Q 009632 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE--NNDDDDEVLLAMAEELGVFIPYVGG--VEHAHV 86 (530)
Q Consensus 11 ~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~--~~d~~~~vr~~~~~~l~~~~~~~~~--~~~~~~ 86 (530)
+..++..+.++-...|+.|+.+|+.++... +.....+++..+.. .+...+..-+...++++.+....|. ..+...
T Consensus 176 l~~l~~ql~s~R~aVrKkai~~l~~la~~~-~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ 254 (1233)
T KOG1824|consen 176 LKCLLPQLQSPRLAVRKKAITALGHLASSC-NRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDK 254 (1233)
T ss_pred HHHHhhcccChHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccch
Confidence 567888999999999999999999998765 45566677766655 3445666667778888877766554 246778
Q ss_pred chhHHHhhh---cccchHHHHHHHHHHHHHHhhcChhhh--hhhHHHHH-HHHhcCCccchhHHHHhHhhhhcCCCChHH
Q 009632 87 LLPPLETLC---TVEETCVRDKAVESLCRIGSQMRESDL--VDWYIPLV-KRLAAGEWFTARVSACGLFHIAYPSAPDIL 160 (530)
Q Consensus 87 l~~~l~~l~---~d~~~~vR~~a~~~l~~l~~~~~~~~~--~~~l~~~l-~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~ 160 (530)
+.|++...+ +.++++.|+.++++++.+....+.+.. ++.+..++ ..+..|++...-.. -.-.........++.
T Consensus 255 ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~-eDed~~~~ed~eDde 333 (1233)
T KOG1824|consen 255 IVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTE-EDEDAMFLEDEEDDE 333 (1233)
T ss_pred hhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCc-cchhhhhhhccccch
Confidence 899998888 778999999999999999998877532 33344333 44445665322110 000000111111110
Q ss_pred HHHHHHHHHhhc--CCCChhHHHHHHHHHHHHHhhhcc--hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCch
Q 009632 161 KTELRSIYTQLC--QDDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ 236 (530)
Q Consensus 161 ~~~l~~~l~~l~--~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~ 236 (530)
.. -+.. +|-+|.||++|++++..++..-.. +.+.+.+-|.++..+++.++.|+...+.+...+..+.++-
T Consensus 334 ~~------deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~ 407 (1233)
T KOG1824|consen 334 QD------DEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPV 407 (1233)
T ss_pred hc------cccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCC
Confidence 00 0122 245899999999999998875444 4556677788888899999999999888888887766430
Q ss_pred -----------------------hhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCc--ccccchHHHHHHhcCC
Q 009632 237 -----------------------DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE--PTRMDLVPAYVRLLRD 291 (530)
Q Consensus 237 -----------------------~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d 291 (530)
.....++..+...+++++-..|..+...+..+...++.. .....++|.+...+.|
T Consensus 408 ~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~D 487 (1233)
T KOG1824|consen 408 IEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLND 487 (1233)
T ss_pred cccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCC
Confidence 012235555555666666667888888888777766543 2356789999999988
Q ss_pred Cc--HHHHHHHHHHHHHHHHhhCHHHH---HhhhhHhHhHhccCCcHHHHHHHHHHHHhhccc---------cCHHHHHH
Q 009632 292 NE--AEVRIAAAGKVTKFCRILNPELA---IQHILPCVKELSSDSSQHVRSALASVIMGMAPL---------LGKDATIE 357 (530)
Q Consensus 292 ~~--~~vr~~a~~~l~~~~~~~~~~~~---~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~---------~~~~~~~~ 357 (530)
.+ ...+..++..+.......+++.+ .+.+.|.+...+.|+.+++-..++.....+++. ++...+..
T Consensus 488 kSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~ 567 (1233)
T KOG1824|consen 488 KSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVK 567 (1233)
T ss_pred ccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHH
Confidence 65 56777788877777777777644 355666677778899998888777766666542 33345566
Q ss_pred hHHHHHHHhhc--CCChHHHHHHHHhhHHhhhhhchhH--HHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhh---Ch
Q 009632 358 QLLPIFLSLLK--DEFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL---GV 430 (530)
Q Consensus 358 ~l~~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~---~~ 430 (530)
.+....++.|. |.+.+||+.|+.+++.++..+|... ..+..+|.+.+.+++ .-.|..|+.++..++... +.
T Consensus 568 ~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~n--EiTRl~AvkAlt~Ia~S~l~i~l 645 (1233)
T KOG1824|consen 568 TMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGN--EITRLTAVKALTLIAMSPLDIDL 645 (1233)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc--hhHHHHHHHHHHHHHhccceeeh
Confidence 66666666664 7789999999999999999998321 124566666666554 558999999999887642 23
Q ss_pred hhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHH---hhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcC
Q 009632 431 GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA---MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG 507 (530)
Q Consensus 431 ~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~---~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~ 507 (530)
.....+++|.+...+.-.....|.....++..+.+.++.... .+.++..+..+..+.+.++-+.|+.++..+....+
T Consensus 646 ~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~p 725 (1233)
T KOG1824|consen 646 SPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQP 725 (1233)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccc
Confidence 345577888888888877888999999999999988754422 25566667777889999999999999998877655
Q ss_pred hH--HHHhhHHHHHHhhccCC
Q 009632 508 SE--ITCSRLLPVVINASKDR 526 (530)
Q Consensus 508 ~~--~~~~~~~p~l~~~l~D~ 526 (530)
.. ...+.+++.+..++.-|
T Consensus 726 s~l~~~~~~iL~~ii~ll~Sp 746 (1233)
T KOG1824|consen 726 SSLLKISNPILDEIIRLLRSP 746 (1233)
T ss_pred HHHHHHhhhhHHHHHHHhhCc
Confidence 32 34566777777666554
No 23
>PRK09687 putative lyase; Provisional
Probab=99.82 E-value=2.2e-18 Score=155.26 Aligned_cols=250 Identities=19% Similarity=0.203 Sum_probs=120.0
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHH
Q 009632 167 IYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI 246 (530)
Q Consensus 167 ~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l 246 (530)
.+...+.|++..||..++.+|+.+.. +.+++.+..++.|+++.+|..|+.+|+.+...-.. ....+|.+
T Consensus 27 ~L~~~L~d~d~~vR~~A~~aL~~~~~--------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---~~~a~~~L 95 (280)
T PRK09687 27 ELFRLLDDHNSLKRISSIRVLQLRGG--------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---QDNVFNIL 95 (280)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCc--------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc---hHHHHHHH
Confidence 33444455666666666655554432 33445555555555556666666555554431100 11233444
Q ss_pred HHh-cCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHh
Q 009632 247 VNF-SQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVK 325 (530)
Q Consensus 247 ~~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~ 325 (530)
..+ .+|+++.||..++.+||.+ +.... ......++.+.
T Consensus 96 ~~l~~~D~d~~VR~~A~~aLG~~---------------------------------------~~~~~--~~~~~a~~~l~ 134 (280)
T PRK09687 96 NNLALEDKSACVRASAINATGHR---------------------------------------CKKNP--LYSPKIVEQSQ 134 (280)
T ss_pred HHHHhcCCCHHHHHHHHHHHhcc---------------------------------------ccccc--ccchHHHHHHH
Confidence 433 3444455555555544444 22100 00112223333
Q ss_pred HhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHH
Q 009632 326 ELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL 405 (530)
Q Consensus 326 ~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~ 405 (530)
....|++|+||..++..++.+.. +..++.+..+++|+++.||..|+.+|+.+.. + .+...+.|...
T Consensus 135 ~~~~D~~~~VR~~a~~aLg~~~~--------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~--~----~~~~~~~L~~~ 200 (280)
T PRK09687 135 ITAFDKSTNVRFAVAFALSVIND--------EAAIPLLINLLKDPNGDVRNWAAFALNSNKY--D----NPDIREAFVAM 200 (280)
T ss_pred HHhhCCCHHHHHHHHHHHhccCC--------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCC--C----CHHHHHHHHHH
Confidence 33445555555555555543321 1234555555555555555555555555411 0 12344555555
Q ss_pred hcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhcc
Q 009632 406 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN 485 (530)
Q Consensus 406 ~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~ 485 (530)
+.|+++.+|..|+.+++.+. ....+|.+.+.+.|+. +|..++.++|.+.. ...+|.|.++++
T Consensus 201 L~D~~~~VR~~A~~aLg~~~--------~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~--------~~a~p~L~~l~~ 262 (280)
T PRK09687 201 LQDKNEEIRIEAIIGLALRK--------DKRVLSVLIKELKKGT--VGDLIIEAAGELGD--------KTLLPVLDTLLY 262 (280)
T ss_pred hcCCChHHHHHHHHHHHccC--------ChhHHHHHHHHHcCCc--hHHHHHHHHHhcCC--------HhHHHHHHHHHh
Confidence 55556666666655555532 1234555555555544 45556666666553 135555555554
Q ss_pred -CCChHHHHHHHHHHH
Q 009632 486 -NPHYLYRMTILRAIS 500 (530)
Q Consensus 486 -d~~~~vr~~a~~~l~ 500 (530)
++|..++..+.+++.
T Consensus 263 ~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 263 KFDDNEIITKAIDKLK 278 (280)
T ss_pred hCCChhHHHHHHHHHh
Confidence 555566666655554
No 24
>PRK09687 putative lyase; Provisional
Probab=99.82 E-value=2.9e-18 Score=154.50 Aligned_cols=241 Identities=15% Similarity=0.078 Sum_probs=186.2
Q ss_pred cHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhh
Q 009632 242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHIL 321 (530)
Q Consensus 242 ~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~ 321 (530)
-.+.+...+.|.+..||..++..|+.+. ....++.+.++++|+++.+|..++.+|+.+...-.. ....+
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~--------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---~~~a~ 92 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRG--------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---QDNVF 92 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcC--------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc---hHHHH
Confidence 4455666778888888888888887664 245677788888888889999999999887542111 23456
Q ss_pred HhHhHh-ccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHH
Q 009632 322 PCVKEL-SSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP 400 (530)
Q Consensus 322 ~~l~~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~ 400 (530)
|.+..+ .+|+++.||..++..++.++... ......+++.+...+.|+++.||..++.+|+.+.. +..++
T Consensus 93 ~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~--~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--------~~ai~ 162 (280)
T PRK09687 93 NILNNLALEDKSACVRASAINATGHRCKKN--PLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND--------EAAIP 162 (280)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcccccc--cccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--------HHHHH
Confidence 667655 68999999999999999985422 11234566677788999999999999999987532 45778
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHH
Q 009632 401 AIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480 (530)
Q Consensus 401 ~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l 480 (530)
.|...++|++|.+|..++.+|+.+. .+ .+...+.+...+.|+++.||..|+..||.+. ....+|.|
T Consensus 163 ~L~~~L~d~~~~VR~~A~~aLg~~~--~~----~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~--------~~~av~~L 228 (280)
T PRK09687 163 LLINLLKDPNGDVRNWAAFALNSNK--YD----NPDIREAFVAMLQDKNEEIRIEAIIGLALRK--------DKRVLSVL 228 (280)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhcCC--CC----CHHHHHHHHHHhcCCChHHHHHHHHHHHccC--------ChhHHHHH
Confidence 8889999999999999999999882 11 2346788999999999999999999998852 24689999
Q ss_pred HhhccCCChHHHHHHHHHHHHHhhhcChHHHHhhHHHHHHhhcc-CCC
Q 009632 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASK-DRY 527 (530)
Q Consensus 481 ~~~~~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~p~l~~~l~-D~~ 527 (530)
.+.+++++ +|..++.++|.+.. +..+|.|..+++ ++.
T Consensus 229 i~~L~~~~--~~~~a~~ALg~ig~--------~~a~p~L~~l~~~~~d 266 (280)
T PRK09687 229 IKELKKGT--VGDLIIEAAGELGD--------KTLLPVLDTLLYKFDD 266 (280)
T ss_pred HHHHcCCc--hHHHHHHHHHhcCC--------HhHHHHHHHHHhhCCC
Confidence 99999877 67789999999997 356777777775 443
No 25
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.79 E-value=2.5e-17 Score=173.81 Aligned_cols=274 Identities=20% Similarity=0.165 Sum_probs=210.6
Q ss_pred HHHHHHHhcCCccchhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHH
Q 009632 127 IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSI 206 (530)
Q Consensus 127 ~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~ 206 (530)
++.+...++|+++.+|..|+..++.+.. +..++.|..+++|+++.||..++.+|..+....+. .+.
T Consensus 623 ~~~L~~~L~D~d~~VR~~Av~~L~~~~~-------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~-------~~~ 688 (897)
T PRK13800 623 VAELAPYLADPDPGVRRTAVAVLTETTP-------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP-------APA 688 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhhcc-------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc-------hHH
Confidence 4455666789999999999999887652 34667777888999999999999999888654332 245
Q ss_pred HHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHH
Q 009632 207 FEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYV 286 (530)
Q Consensus 207 l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~ 286 (530)
+...+.|+++.||..++..|+.+... -.+.+...+.|+++.||..++.+|+.+.. .+.+.
T Consensus 689 L~~~L~~~d~~VR~~A~~aL~~~~~~---------~~~~l~~~L~D~d~~VR~~Av~aL~~~~~-----------~~~l~ 748 (897)
T PRK13800 689 LRDHLGSPDPVVRAAALDVLRALRAG---------DAALFAAALGDPDHRVRIEAVRALVSVDD-----------VESVA 748 (897)
T ss_pred HHHHhcCCCHHHHHHHHHHHHhhccC---------CHHHHHHHhcCCCHHHHHHHHHHHhcccC-----------cHHHH
Confidence 66677888999999999999886421 12345668899999999999999887521 13466
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHh
Q 009632 287 RLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSL 366 (530)
Q Consensus 287 ~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~ 366 (530)
.++.|++++||.+++.+|+.+...- ....+.+..+++|+++.||..++..++.+... ..+.+.+...
T Consensus 749 ~~l~D~~~~VR~~aa~aL~~~~~~~------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~-------~~~~~~l~~a 815 (897)
T PRK13800 749 GAATDENREVRIAVAKGLATLGAGG------APAGDAVRALTGDPDPLVRAAALAALAELGCP-------PDDVAAATAA 815 (897)
T ss_pred HHhcCCCHHHHHHHHHHHHHhcccc------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc-------chhHHHHHHH
Confidence 7899999999999999999886421 12256677888999999999999999887532 1223457788
Q ss_pred hcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhc
Q 009632 367 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ 446 (530)
Q Consensus 367 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~ 446 (530)
|+|+++.||..|+.+|+.+.. +..++.|...++|+++.+|..++.+|+.+... . ...+.+...++
T Consensus 816 L~d~d~~VR~~Aa~aL~~l~~--------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~-~------~a~~~L~~al~ 880 (897)
T PRK13800 816 LRASAWQVRQGAARALAGAAA--------DVAVPALVEALTDPHLDVRKAAVLALTRWPGD-P------AARDALTTALT 880 (897)
T ss_pred hcCCChHHHHHHHHHHHhccc--------cchHHHHHHHhcCCCHHHHHHHHHHHhccCCC-H------HHHHHHHHHHh
Confidence 999999999999999987532 34568888888999999999999999987311 1 13566778899
Q ss_pred CCcHHHHHHHHHHHHH
Q 009632 447 DKVYSIRDAAANNLKR 462 (530)
Q Consensus 447 d~~~~Vr~~a~~~l~~ 462 (530)
|++..||..|.++|..
T Consensus 881 D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 881 DSDADVRAYARRALAH 896 (897)
T ss_pred CCCHHHHHHHHHHHhh
Confidence 9999999999998863
No 26
>PTZ00429 beta-adaptin; Provisional
Probab=99.79 E-value=1.4e-14 Score=146.18 Aligned_cols=469 Identities=12% Similarity=0.072 Sum_probs=303.7
Q ss_pred cHHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhcccccccc-ccCCchHHHHHHHHHHhcccccCCCccchhcch
Q 009632 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLL 88 (530)
Q Consensus 10 ~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~ 88 (530)
.+..+.+.|.+.+...|..+++.+-... .+|. +.. .+.+.+.. +..++.++|+.+...+.++++. .++..-..+
T Consensus 33 e~~ELr~~L~s~~~~~kk~alKkvIa~m-t~G~-DvS-~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~--~pelalLaI 107 (746)
T PTZ00429 33 EGAELQNDLNGTDSYRKKAAVKRIIANM-TMGR-DVS-YLFVDVVKLAPSTDLELKKLVYLYVLSTARL--QPEKALLAV 107 (746)
T ss_pred hHHHHHHHHHCCCHHHHHHHHHHHHHHH-HCCC-Cch-HHHHHHHHHhCCCCHHHHHHHHHHHHHHccc--ChHHHHHHH
Confidence 4567888899999988888887665542 2342 222 33333333 5677899999999888888662 233344456
Q ss_pred hHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChH-HHHHHHHH
Q 009632 89 PPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-LKTELRSI 167 (530)
Q Consensus 89 ~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~-~~~~l~~~ 167 (530)
+.|..-++|+++.+|-.|+++++.+ ....+.+.+.+.+.+.+.|+++.||..|+.++..++...++. ....+.+.
T Consensus 108 Ntl~KDl~d~Np~IRaLALRtLs~I----r~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~ 183 (746)
T PTZ00429 108 NTFLQDTTNSSPVVRALAVRTMMCI----RVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKD 183 (746)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHcC----CcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHH
Confidence 6777778899999999999888876 334556677888888889999999999999999887765543 23457778
Q ss_pred HHhhcCCCChhHHHHHHHHHHHHHhhhcchh-hHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc-hhhhhccHHH
Q 009632 168 YTQLCQDDMPMVRRSAASNLGKFAATVEPAH-LKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP-QDCVAHILPV 245 (530)
Q Consensus 168 l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~-~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~~~~ 245 (530)
+.+++.|+++.|...|+.+|..+....+... .....+..+...+.+-++--+...++.+.. ..+. +.....++..
T Consensus 184 L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~---y~P~~~~e~~~il~~ 260 (746)
T PTZ00429 184 LVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAA---QRPSDKESAETLLTR 260 (746)
T ss_pred HHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHh---cCCCCcHHHHHHHHH
Confidence 8888999999999999999999976544311 112233334444444444445555555533 2221 1223457777
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHhCCccc---ccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhH
Q 009632 246 IVNFSQDKSWRVRYMVANQLYELCEAVGPEPT---RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILP 322 (530)
Q Consensus 246 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~ 322 (530)
+...+++.++.|..++++++-.+.....++.. ...+.+.++.+ ..+++++|..++..+..+.... +..+... +.
T Consensus 261 l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~-P~lf~~~-~~ 337 (746)
T PTZ00429 261 VLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVIF-PNLLRTN-LD 337 (746)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHC-HHHHHHH-HH
Confidence 77778888899999999988877654322211 11233455555 4566899999999998887644 3333222 33
Q ss_pred hHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHH
Q 009632 323 CVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAI 402 (530)
Q Consensus 323 ~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l 402 (530)
.+.-..+|+. .+|...++.+..++..-.- ..++.-+.....|.+.+++..++.+++.++..+.. ..+.++..|
T Consensus 338 ~Ff~~~~Dp~-yIK~~KLeIL~~Lane~Nv----~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~--~a~~cV~~L 410 (746)
T PTZ00429 338 SFYVRYSDPP-FVKLEKLRLLLKLVTPSVA----PEILKELAEYASGVDMVFVVEVVRAIASLAIKVDS--VAPDCANLL 410 (746)
T ss_pred hhhcccCCcH-HHHHHHHHHHHHHcCcccH----HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChH--HHHHHHHHH
Confidence 3333345655 4888888888888754332 33445556666788888999999999988866532 345677777
Q ss_pred HHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHH
Q 009632 403 VELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL---QDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQ 479 (530)
Q Consensus 403 ~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l---~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~ 479 (530)
.+++.+...-+ ..++..+..+........ +++.+...+ .=.++..|.+.+..+|+.+..... ...++..
T Consensus 411 l~ll~~~~~~v-~e~i~vik~IlrkyP~~~----il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~---a~~~L~~ 482 (746)
T PTZ00429 411 LQIVDRRPELL-PQVVTAAKDIVRKYPELL----MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN---GKDIIQR 482 (746)
T ss_pred HHHhcCCchhH-HHHHHHHHHHHHHCccHH----HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh---HHHHHHH
Confidence 77776543322 345666666655444332 333333221 124566788888888887765532 2345555
Q ss_pred HHhhccCCChHHHHHHHHHHHHHhhhcCh
Q 009632 480 VLEMINNPHYLYRMTILRAISLLAPVMGS 508 (530)
Q Consensus 480 l~~~~~d~~~~vr~~a~~~l~~i~~~~~~ 508 (530)
+.+.+.+.+..||...+.+..++.-..+.
T Consensus 483 ~i~~f~~E~~~VqlqlLta~vKlfl~~p~ 511 (746)
T PTZ00429 483 FIDTIMEHEQRVQLAILSAAVKMFLRDPQ 511 (746)
T ss_pred HHhhhccCCHHHHHHHHHHHHHHHhcCcH
Confidence 55556667778888888888877665543
No 27
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.78 E-value=1.1e-14 Score=134.97 Aligned_cols=422 Identities=14% Similarity=0.083 Sum_probs=289.8
Q ss_pred cCCchHHHHHHHHHHhcccccCCCccchhcchhHHHhhhcc-cchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhc
Q 009632 57 NDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTV-EETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAA 135 (530)
Q Consensus 57 ~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d-~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~ 135 (530)
.++++.+|..+...|.++.. .++..++.-+...++.+ ..+..|..|.-+|++-...-.++..
T Consensus 15 LspD~n~rl~aE~ql~~l~~----~dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~------------- 77 (858)
T COG5215 15 LSPDPNARLRAEAQLLELQS----GDFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQ------------- 77 (858)
T ss_pred CCCCCCccccHHHHHHHhcc----ccHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHH-------------
Confidence 45667777777777766644 23333333333334443 3677888777666554332222111
Q ss_pred CCccchhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCc
Q 009632 136 GEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQ 215 (530)
Q Consensus 136 ~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~ 215 (530)
+.. ...+-.+..+.++++....+..+..+.|+.-..|++.++.++..--+...++.++..+.....|+.
T Consensus 78 ------~~~-----~qrW~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eq 146 (858)
T COG5215 78 ------KGC-----SQRWLGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQ 146 (858)
T ss_pred ------HHH-----HHhhccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccC
Confidence 111 222334667788888899999999999999999999999999887777778889999999899887
Q ss_pred h-hHHHHHHHHHHHHhhhcCchhhhhc---c-HHHHHHhc-CCCCHHHHHHHHHHHHHHHHH----hCCcccccchHHHH
Q 009632 216 D-SVRLLAVEGCAALGKLLEPQDCVAH---I-LPVIVNFS-QDKSWRVRYMVANQLYELCEA----VGPEPTRMDLVPAY 285 (530)
Q Consensus 216 ~-~vr~~a~~~l~~l~~~~~~~~~~~~---~-~~~l~~~~-~d~~~~vr~~~~~~l~~l~~~----~~~~~~~~~l~~~l 285 (530)
+ .++..++.++++.++...++..... + +..+.-.. +..+..||.++.++|..-... +..+...+.++...
T Consensus 147 p~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvv 226 (858)
T COG5215 147 PVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVV 226 (858)
T ss_pred chHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheee
Confidence 6 4888899999999988877543322 2 22222223 346788999999999873332 33344456677777
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHhhC---HHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHH---------
Q 009632 286 VRLLRDNEAEVRIAAAGKVTKFCRILN---PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD--------- 353 (530)
Q Consensus 286 ~~~l~d~~~~vr~~a~~~l~~~~~~~~---~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--------- 353 (530)
....+.++.+++.++..++..+....- +..+.+.+........++++..|...+++.++.+++.--.-
T Consensus 227 ceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe 306 (858)
T COG5215 227 CEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPE 306 (858)
T ss_pred ehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhccc
Confidence 777788899999999999988765321 11222333444456778999999999999998887421100
Q ss_pred ----------HHHHhHHHHHHHhhc-------CCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHH
Q 009632 354 ----------ATIEQLLPIFLSLLK-------DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLA 416 (530)
Q Consensus 354 ----------~~~~~l~~~l~~~l~-------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~ 416 (530)
.....++|.++++|. +++|++-.+|..+|.-+.+..|. .+.+.++..+..-+.+++|+.|.+
T Consensus 307 ~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd-~i~~pVl~FvEqni~~~~w~nrea 385 (858)
T COG5215 307 VPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD-KIMRPVLGFVEQNIRSESWANREA 385 (858)
T ss_pred CchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh-HhHHHHHHHHHHhccCchhhhHHH
Confidence 013458899999885 35688999999999888887774 344557777778889999999999
Q ss_pred HHHHHHHHHhhhChhh---HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHh-hhhHHHHHhh---ccCCCh
Q 009632 417 IIEYIPLLASQLGVGF---FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM-QHITPQVLEM---INNPHY 489 (530)
Q Consensus 417 ~~~~l~~l~~~~~~~~---~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~-~~i~~~l~~~---~~d~~~ 489 (530)
++.+++.+.+.-.... +.++.+|.+...+.|+.-.|+..++.|+|.|+......... .++.+.+... +.| ++
T Consensus 386 avmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D-~p 464 (858)
T COG5215 386 AVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMD-CP 464 (858)
T ss_pred HHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhc-cc
Confidence 9999999976544333 34678899999999999999999999999999876433211 2233322222 222 44
Q ss_pred HHHHHHHHHHHHHhhhcCh
Q 009632 490 LYRMTILRAISLLAPVMGS 508 (530)
Q Consensus 490 ~vr~~a~~~l~~i~~~~~~ 508 (530)
.+-.++.+.+.+++.++.+
T Consensus 465 ~~~~ncsw~~~nlv~h~a~ 483 (858)
T COG5215 465 FRSINCSWRKENLVDHIAK 483 (858)
T ss_pred hHHhhhHHHHHhHHHhhhh
Confidence 5566777777777776654
No 28
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.78 E-value=5.6e-15 Score=137.94 Aligned_cols=481 Identities=17% Similarity=0.183 Sum_probs=305.6
Q ss_pred HHhcChhHHHHHHHhhcHHHHHHhhChHhhhhcccccccc-ccC-CchHHHHHHHHHHhcccccCCC--ccchhcchhHH
Q 009632 16 DELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NND-DDDEVLLAMAEELGVFIPYVGG--VEHAHVLLPPL 91 (530)
Q Consensus 16 ~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d-~~~~vr~~~~~~l~~~~~~~~~--~~~~~~l~~~l 91 (530)
.-+.+.|+-.|....+..+.++.++|-+ +++|++.. +.+ .+-+-|....++...+...+|. -.|..-++..+
T Consensus 288 pDi~~~deYVRnvt~ra~~vva~algv~----~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci 363 (975)
T COG5181 288 PDITSKDEYVRNVTGRAVGVVADALGVE----ELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCI 363 (975)
T ss_pred CCcccccHHHHHHHHHHHHHHHHhhCcH----HHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHH
Confidence 3456788888888888888888888754 66777766 322 2444555555554444444442 23455667777
Q ss_pred HhhhcccchHHHHHHHHHHHHHHhhcChhh---hhhhHHHHHHHHhcCCccchhHHHHhHhhhhcC--------------
Q 009632 92 ETLCTVEETCVRDKAVESLCRIGSQMRESD---LVDWYIPLVKRLAAGEWFTARVSACGLFHIAYP-------------- 154 (530)
Q Consensus 92 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~-------------- 154 (530)
..++.|+...||..++.+++.+++...+-. +...+-|+.....+... ..-.+.....+.+.+
T Consensus 364 ~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw~g~~~hrg-k~l~sfLkA~g~iiplm~peYa~h~tre~ 442 (975)
T COG5181 364 SKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEGASQHRG-KELVSFLKAMGFIIPLMSPEYACHDTREH 442 (975)
T ss_pred HHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHHHHHHHHHHHhcCC-chHHHHHHHhccccccCChHhhhhhHHHH
Confidence 888889999999999999999988776622 22222232222211110 000011111111111
Q ss_pred ---------------------------CC---ChH-HHHHHHHHH-----------------------------------
Q 009632 155 ---------------------------SA---PDI-LKTELRSIY----------------------------------- 168 (530)
Q Consensus 155 ---------------------------~~---~~~-~~~~l~~~l----------------------------------- 168 (530)
.. ++. ..+++.|.|
T Consensus 443 m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~~v 522 (975)
T COG5181 443 MEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDPRV 522 (975)
T ss_pred HHHHHHHhCCchhhcchhHHHHHHHHhccCCCCHHHHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCChHH
Confidence 11 111 122222222
Q ss_pred ----HhhcCCCChhHHHHHHHHHHHHHhhhcc--------------------------------------------hhhH
Q 009632 169 ----TQLCQDDMPMVRRSAASNLGKFAATVEP--------------------------------------------AHLK 200 (530)
Q Consensus 169 ----~~l~~d~~~~vR~~a~~~l~~l~~~~~~--------------------------------------------~~~~ 200 (530)
+....|+...-|+..+.....+...+|. ..+.
T Consensus 523 ~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp~l 602 (975)
T COG5181 523 SRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHL 602 (975)
T ss_pred HHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhccCcch
Confidence 2222344444566666666655554441 1223
Q ss_pred HHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhc---CchhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCc--
Q 009632 201 TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLL---EPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE-- 275 (530)
Q Consensus 201 ~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~---~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~-- 275 (530)
+.++..+.+++.+..+.||..|+..++.++..+ ++......+--.+.+.+....+.|-....+++..+....+-.
T Consensus 603 ~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~m 682 (975)
T COG5181 603 SMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSM 682 (975)
T ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhccccc
Confidence 456677777888899999999999999888765 444455666667777788888889888888888887765432
Q ss_pred -ccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHh----hCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhcccc
Q 009632 276 -PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI----LNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL 350 (530)
Q Consensus 276 -~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~----~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~ 350 (530)
.-...++|.+...++..+..|..+.+..++.++.. +|...|....+..+ +.++.-+..+|..+.++++.++...
T Consensus 683 qpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLv-d~Lks~nKeiRR~A~~tfG~Is~ai 761 (975)
T COG5181 683 QPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELV-DSLKSWNKEIRRNATETFGCISRAI 761 (975)
T ss_pred CCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHH-HHHHHhhHHHHHhhhhhhhhHHhhc
Confidence 12456888888888888888888888888888864 34556654444433 3445566689999999999999999
Q ss_pred CHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCh
Q 009632 351 GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV 430 (530)
Q Consensus 351 ~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~ 430 (530)
|+.. ++..+++-|+-.+...|.+..-+++.+++..|+- .++|.+..-...++..+....+.+++.+.+..|.
T Consensus 762 GPqd----vL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpf----sVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~ 833 (975)
T COG5181 762 GPQD----VLDILLNNLKVQERQQRVCTSVAISIVAEYCGPF----SVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQ 833 (975)
T ss_pred CHHH----HHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCch----hhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHH
Confidence 8754 4455666666666667777766777776666643 4677776666667777777777777777776664
Q ss_pred hh--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh---ChhHHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhh
Q 009632 431 GF--FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF---GPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPV 505 (530)
Q Consensus 431 ~~--~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~---~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~ 505 (530)
.. +.-.+.|.+...+.|.++.=|..|...+..++-.. |.+...-.++..+....-++.+.+.+...+.+..+...
T Consensus 834 ~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~ 913 (975)
T COG5181 834 ASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATV 913 (975)
T ss_pred HHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHH
Confidence 33 33457788888888888888888888777776543 22222344555555666677888888888888888777
Q ss_pred cChHH
Q 009632 506 MGSEI 510 (530)
Q Consensus 506 ~~~~~ 510 (530)
+|.-.
T Consensus 914 lg~g~ 918 (975)
T COG5181 914 LGSGA 918 (975)
T ss_pred hccHH
Confidence 77543
No 29
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=3.2e-16 Score=159.99 Aligned_cols=463 Identities=19% Similarity=0.211 Sum_probs=323.3
Q ss_pred ccCCchHHHHHHHHHHhcccccCCC-cc---chhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHH
Q 009632 56 NNDDDDEVLLAMAEELGVFIPYVGG-VE---HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVK 131 (530)
Q Consensus 56 ~~d~~~~vr~~~~~~l~~~~~~~~~-~~---~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~ 131 (530)
+.+++|..|++.+..|-.+++++|. ++ +-+.|...|..+++|.|.-+++.|.++++-+-+.-+.......+-.++.
T Consensus 827 ~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k~~LV~sL~~ 906 (1702)
T KOG0915|consen 827 LTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLKKSLVDSLVN 906 (1702)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhHHHHHHHHHH
Confidence 5678999999999999888888873 22 2356777889999999999999999999887766555555556667777
Q ss_pred HHhcCCccchhHHHH-hHh--hhhcCCC-----C----------hHHHHHHHHHHHhhcC-CCChhHHHHHHHHHHHHHh
Q 009632 132 RLAAGEWFTARVSAC-GLF--HIAYPSA-----P----------DILKTELRSIYTQLCQ-DDMPMVRRSAASNLGKFAA 192 (530)
Q Consensus 132 ~l~~~~~~~~r~~~~-~~l--~~l~~~~-----~----------~~~~~~l~~~l~~l~~-d~~~~vR~~a~~~l~~l~~ 192 (530)
.+...+....+...- .++ |.+.+.- + +-.+++++-.|+++.+ +..|.-|+.|+-.++.+++
T Consensus 907 tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~ 986 (1702)
T KOG0915|consen 907 TLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKKGAAFGFGAIAK 986 (1702)
T ss_pred HHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhcccchhhchHHHHH
Confidence 777654322222111 111 1122111 0 1124667777887765 4589999999999999999
Q ss_pred hhcc--hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc--hhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 009632 193 TVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYEL 268 (530)
Q Consensus 193 ~~~~--~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l 268 (530)
..+. +.+...++|.+...-.|++..|+.+....|..+..--.. +.|.+.++.-+...+.++.|+||.++|-++..+
T Consensus 987 ~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dL 1066 (1702)
T KOG0915|consen 987 QAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADL 1066 (1702)
T ss_pred HHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence 8876 567788999999999999999999988888887754222 456677777777788999999999999999999
Q ss_pred HHHhCCccc---ccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhh----------CHHHHHhhhhHhHhH-hccCCcHH
Q 009632 269 CEAVGPEPT---RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL----------NPELAIQHILPCVKE-LSSDSSQH 334 (530)
Q Consensus 269 ~~~~~~~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~----------~~~~~~~~l~~~l~~-~~~d~~~~ 334 (530)
.+.-..+.. ..+++..+++.+.|=...||++|-++...+.+.+ ........++|.+.. ..-++-..
T Consensus 1067 l~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~e 1146 (1702)
T KOG0915|consen 1067 LQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNE 1146 (1702)
T ss_pred HcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHH
Confidence 886443333 2356677777788888899999887776665543 123556788888853 22366778
Q ss_pred HHHHHHHHHHhhccccCHH--HHHHhHHHHHHHhhcCCChHHH-------------------HHHHH------hhHHhhh
Q 009632 335 VRSALASVIMGMAPLLGKD--ATIEQLLPIFLSLLKDEFPDVR-------------------LNIIS------KLDQVNQ 387 (530)
Q Consensus 335 vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr-------------------~~a~~------~l~~l~~ 387 (530)
+|...+..+..+++..|.. .+.+.+.|.+.+....-.+.|- ..++. ++..++.
T Consensus 1147 vr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~ 1226 (1702)
T KOG0915|consen 1147 VRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCIN 1226 (1702)
T ss_pred HHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHH
Confidence 9999999999999887763 4567778888877765444332 22211 1111122
Q ss_pred hhchhHHHhhHHHHHHHHhcCC-ChHHHHHHHHHHHHHHhhhChhh--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Q 009632 388 VIGIDLLSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKVYSIRDAAANNLKRLA 464 (530)
Q Consensus 388 ~~~~~~~~~~l~~~l~~~~~~~-~~~~R~~~~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~ 464 (530)
.+. ....+++.|.+.+++..+ .-..|..+..++..++..+|.+. +..+++..++..++|++..||.+-+.++|.++
T Consensus 1227 ~iD-~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~ 1305 (1702)
T KOG0915|consen 1227 YID-ISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLA 1305 (1702)
T ss_pred hhh-HHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHH
Confidence 221 234578899998887665 56789999999999999998665 66789999999999999999999999999999
Q ss_pred HHhChhHHhhhhHHHHHh-hccCCChHHHHHHHHHHHHHhhhcCh--HHHHhhHHHHHHh
Q 009632 465 EEFGPEWAMQHITPQVLE-MINNPHYLYRMTILRAISLLAPVMGS--EITCSRLLPVVIN 521 (530)
Q Consensus 465 ~~~~~~~~~~~i~~~l~~-~~~d~~~~vr~~a~~~l~~i~~~~~~--~~~~~~~~p~l~~ 521 (530)
..-.++.. +.++..+.. ++.+.+ ..+..++..+.++...... +.....++|...-
T Consensus 1306 k~Ss~dq~-qKLie~~l~~~l~k~e-s~~siscatis~Ian~s~e~Lkn~asaILPLiFL 1363 (1702)
T KOG0915|consen 1306 KFSSPDQM-QKLIETLLADLLGKDE-SLKSISCATISNIANYSQEMLKNYASAILPLIFL 1363 (1702)
T ss_pred hcCChHHH-HHHHHHHHHHHhccCC-CccchhHHHHHHHHHhhHHHHHhhHHHHHHHHHH
Confidence 88776543 445554443 333322 2225555555554443321 2235566775443
No 30
>PTZ00429 beta-adaptin; Provisional
Probab=99.77 E-value=4.3e-14 Score=142.62 Aligned_cols=472 Identities=10% Similarity=0.036 Sum_probs=317.2
Q ss_pred CCCCCCCcCcHHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhcccccccc-ccCCchHHHHHHHHHHhcccccCC
Q 009632 1 MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVG 79 (530)
Q Consensus 1 ~~~~~~~~~~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~ 79 (530)
|.+|.+--.-+...+..+.++|...|+...-.+...++.. |+.. -..++.++. +.|+||.+|..+.+.|+.+ .
T Consensus 60 mt~G~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~-pela-lLaINtl~KDl~d~Np~IRaLALRtLs~I----r 133 (746)
T PTZ00429 60 MTMGRDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQ-PEKA-LLAVNTFLQDTTNSSPVVRALAVRTMMCI----R 133 (746)
T ss_pred HHCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC-hHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHcC----C
Confidence 3455554455778889999999999999988888776532 2211 133555555 8899999999999999887 3
Q ss_pred CccchhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChH
Q 009632 80 GVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI 159 (530)
Q Consensus 80 ~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~ 159 (530)
.++....+.+.+...+.|.++.||+.|+.++.++....+.-.....+.+.+..++.|.++.|...|...+..+....+..
T Consensus 134 ~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~ 213 (746)
T PTZ00429 134 VSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK 213 (746)
T ss_pred cHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh
Confidence 36777888888999999999999999999999998765532223346677778889999999999999888887554432
Q ss_pred --HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc-hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCch
Q 009632 160 --LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP-AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ 236 (530)
Q Consensus 160 --~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~ 236 (530)
.....+..+...+.+-++.-+-..++.|.. ..+. +.....++..+...+.+.++.|.-.|++++-.+.....++
T Consensus 214 l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~---y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~ 290 (746)
T PTZ00429 214 IESSNEWVNRLVYHLPECNEWGQLYILELLAA---QRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQE 290 (746)
T ss_pred hHHHHHHHHHHHHHhhcCChHHHHHHHHHHHh---cCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHH
Confidence 122223333444444445555555555533 3232 2233567778888888899999999999998887654332
Q ss_pred hhhhc----cHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC
Q 009632 237 DCVAH----ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN 312 (530)
Q Consensus 237 ~~~~~----~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~ 312 (530)
.... +.+.+..+ .++++.+|..++..+..+..... ..... -+..|.-..+|+. .||...+..|..++..-.
T Consensus 291 -~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P-~lf~~-~~~~Ff~~~~Dp~-yIK~~KLeIL~~Lane~N 365 (746)
T PTZ00429 291 -LIERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVIFP-NLLRT-NLDSFYVRYSDPP-FVKLEKLRLLLKLVTPSV 365 (746)
T ss_pred -HHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCH-HHHHH-HHHhhhcccCCcH-HHHHHHHHHHHHHcCccc
Confidence 2222 32444444 34567899999999888776532 22112 1344444556765 488888888888775433
Q ss_pred HHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh
Q 009632 313 PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 392 (530)
Q Consensus 313 ~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 392 (530)
. ..++.-+.+.+.+.+...+..++.+++.++..+. .....++..+..++.+... +...++..+..+.......
T Consensus 366 v----~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~--~~a~~cV~~Ll~ll~~~~~-~v~e~i~vik~IlrkyP~~ 438 (746)
T PTZ00429 366 A----PEILKELAEYASGVDMVFVVEVVRAIASLAIKVD--SVAPDCANLLLQIVDRRPE-LLPQVVTAAKDIVRKYPEL 438 (746)
T ss_pred H----HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCh--HHHHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHCccH
Confidence 3 3455556666678888999999999999986654 3466778888888877654 3445677788877665432
Q ss_pred HHHhhHHHHHHHHh---cCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCh
Q 009632 393 LLSQSLLPAIVELA---EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP 469 (530)
Q Consensus 393 ~~~~~l~~~l~~~~---~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~ 469 (530)
.+++.+.... .-.+...|.+.++.+|..+..... ...++..+..-+.+....||...+.+...++-....
T Consensus 439 ----~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~---a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~ 511 (746)
T PTZ00429 439 ----LMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN---GKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQ 511 (746)
T ss_pred ----HHHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh---HHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcH
Confidence 2445554432 123577999999999998876543 233443344445567789999999998888766543
Q ss_pred hHHhhhhHHHHH-hhcc-CCChHHHHHHHHHHHHH
Q 009632 470 EWAMQHITPQVL-EMIN-NPHYLYRMTILRAISLL 502 (530)
Q Consensus 470 ~~~~~~i~~~l~-~~~~-d~~~~vr~~a~~~l~~i 502 (530)
+. +..+..+. .+.+ +.|+++|..|.....-+
T Consensus 512 ~~--~~~l~~vL~~~t~~~~d~DVRDRA~~Y~rLL 544 (746)
T PTZ00429 512 GM--EPQLNRVLETVTTHSDDPDVRDRAFAYWRLL 544 (746)
T ss_pred HH--HHHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Confidence 32 23344444 3334 46889998888766444
No 31
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.77 E-value=3e-17 Score=163.79 Aligned_cols=283 Identities=22% Similarity=0.294 Sum_probs=228.4
Q ss_pred cHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC------HH
Q 009632 242 ILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN------PE 314 (530)
Q Consensus 242 ~~~~l~~~~~d-~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~------~~ 314 (530)
+++.+...+.. .....|..+...+..++..+..+...+.++|+++-++.|+..+||..|+.++..+...+. ..
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~dan 502 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDAN 502 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccch
Confidence 45555554443 345567788888888888888777778889999999999999999999988888776542 23
Q ss_pred HHHhhhhHhHhHhccC-CcHHHHHHHHHHHHhhccccC------------------------H-------HHHHHhHHHH
Q 009632 315 LAIQHILPCVKELSSD-SSQHVRSALASVIMGMAPLLG------------------------K-------DATIEQLLPI 362 (530)
Q Consensus 315 ~~~~~l~~~l~~~~~d-~~~~vr~~~~~~l~~l~~~~~------------------------~-------~~~~~~l~~~ 362 (530)
.+.+.++|.+..++.| ....||.+.+..++.++.... . ......+-..
T Consensus 503 iF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~ 582 (1431)
T KOG1240|consen 503 IFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQM 582 (1431)
T ss_pred hhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHH
Confidence 5667888888888888 666888888888877653110 0 0122344556
Q ss_pred HHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHH
Q 009632 363 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCM 442 (530)
Q Consensus 363 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~ 442 (530)
+..++.|+.+.||.+.++.+..+|..+|.+...+-+++.|..+++|++|+.|.+..+.+..++-.+|.....+.++|.+.
T Consensus 583 v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~ 662 (1431)
T KOG1240|consen 583 VSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQ 662 (1431)
T ss_pred HHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHH
Confidence 67788999999999999999999999999888889999999999999999999999999999999999888999999999
Q ss_pred HHhcCCcHHHHHHHHHHHHHHHHHh--ChhHHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcChHHHHhhHHHHHH
Q 009632 443 QWLQDKVYSIRDAAANNLKRLAEEF--GPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVI 520 (530)
Q Consensus 443 ~~l~d~~~~Vr~~a~~~l~~l~~~~--~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~p~l~ 520 (530)
+.+.|....|-..|++++..+++.. .+. ...+++..+..++-+||..+|.+++..+..+...++..++...++|.+.
T Consensus 663 Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~-~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~ir 741 (1431)
T KOG1240|consen 663 QGLTDGEEAVIVSALGSLSILIKLGLLRKP-AVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIR 741 (1431)
T ss_pred HhccCcchhhHHHHHHHHHHHHHhcccchH-HHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhH
Confidence 9999999999999999999988763 222 2356777888889999999999999999999999998877777777665
Q ss_pred hhccC
Q 009632 521 NASKD 525 (530)
Q Consensus 521 ~~l~D 525 (530)
.+++-
T Consensus 742 pfl~~ 746 (1431)
T KOG1240|consen 742 PFLER 746 (1431)
T ss_pred Hhhhc
Confidence 55543
No 32
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=5.8e-15 Score=136.61 Aligned_cols=441 Identities=15% Similarity=0.173 Sum_probs=308.9
Q ss_pred ccCCchHHHHHHHHHHhcccccCCCcc---chhcchh-HHHhhhcccchHHHHHHHHHHHHHHhhcChhh---hhhhHHH
Q 009632 56 NNDDDDEVLLAMAEELGVFIPYVGGVE---HAHVLLP-PLETLCTVEETCVRDKAVESLCRIGSQMRESD---LVDWYIP 128 (530)
Q Consensus 56 ~~d~~~~vr~~~~~~l~~~~~~~~~~~---~~~~l~~-~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~---~~~~l~~ 128 (530)
+.|+-.|.|+++|..+.++++.+-.+. ....++. +...+....+...|++++.++...+-.++.+. ....+.|
T Consensus 9 ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~P 88 (675)
T KOG0212|consen 9 LTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPP 88 (675)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHH
Confidence 457778899999999988887443222 2333333 55666677788888888888888777676654 3333444
Q ss_pred HHHHHhcCCccchhHHHHhHhhhhcCCCChH---HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc----hhhHH
Q 009632 129 LVKRLAAGEWFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP----AHLKT 201 (530)
Q Consensus 129 ~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~---~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~----~~~~~ 201 (530)
.+ ...+|.+..+|+.||..+..+++....+ +.+++...+.++..|++..||.++ +.+..+.+...- ....+
T Consensus 89 v~-~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~a-eLLdRLikdIVte~~~tFsL~ 166 (675)
T KOG0212|consen 89 VL-NCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGA-ELLDRLIKDIVTESASTFSLP 166 (675)
T ss_pred HH-HhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHH-HHHHHHHHHhccccccccCHH
Confidence 44 4556777799999999998887766554 678999999999999999999765 556666554433 23468
Q ss_pred HHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCch--hhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcc---
Q 009632 202 DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ--DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--- 276 (530)
Q Consensus 202 ~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--- 276 (530)
.++|.+.+.+.+.++..|...+..+..+-..-+-+ .+.+.+++-+...++|++..||...-.+++++...+....
T Consensus 167 ~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~ 246 (675)
T KOG0212|consen 167 EFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSM 246 (675)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 89999999999999999999888776654432222 3566788889999999999999988888888877664332
Q ss_pred cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHH--HHhhhhHhHhHhccCCcH-HHHHHHHHHHHhhccccC--
Q 009632 277 TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL--AIQHILPCVKELSSDSSQ-HVRSALASVIMGMAPLLG-- 351 (530)
Q Consensus 277 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~--~~~~l~~~l~~~~~d~~~-~vr~~~~~~l~~l~~~~~-- 351 (530)
.....++.+...+..++++++..|+.++..|....|.+. +.+.++..+..++.|... ..+..+...-+.+.+.++
T Consensus 247 d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~ 326 (675)
T KOG0212|consen 247 DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSE 326 (675)
T ss_pred CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhh
Confidence 346788999999999999999999999999999888762 234444444455555554 344444333323332222
Q ss_pred ---HHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHH--HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 009632 352 ---KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL--SQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 426 (530)
Q Consensus 352 ---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~ 426 (530)
.+.-...++..+...+.++..+.|.++++=+..+....+.+-+ ...+++.+.+.++|++..+-..++..+..++.
T Consensus 327 ~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~ 406 (675)
T KOG0212|consen 327 RLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICS 406 (675)
T ss_pred hhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhc
Confidence 2233457889999999999999999999998888887776543 47899999999999999999999999999887
Q ss_pred hhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhc-cCCChHHHHHHHHHHHHHh
Q 009632 427 QLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI-NNPHYLYRMTILRAISLLA 503 (530)
Q Consensus 427 ~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~-~d~~~~vr~~a~~~l~~i~ 503 (530)
.-..... .+++.-++++......-++..+.-.+.+++-.+..+.+ ...+...+ +.+|...-..-++++..+.
T Consensus 407 s~~~~~~-~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~I----Yr~~a~ILe~e~nl~FAstMV~~Ln~iL 479 (675)
T KOG0212|consen 407 SSNSPNL-RKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAERI----YRSIADILEREENLKFASTMVQALNTIL 479 (675)
T ss_pred CcccccH-HHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHHHH----HHHHHHHHhccccchHHHHHHHHHHhhh
Confidence 5544322 23333444444555555677777777888877765432 22222211 2344444445555555443
No 33
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=8.7e-15 Score=149.80 Aligned_cols=489 Identities=17% Similarity=0.171 Sum_probs=325.1
Q ss_pred HHHHHhcChhHHHHHHHhhcHHHHHHhhCh--Hhh--hhcccccccc-ccCCchHHHHHHHHHHhcccccCCCc------
Q 009632 13 VLIDELKNDDIQLRLNSIRRLSTIARALGE--ERT--RKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGV------ 81 (530)
Q Consensus 13 ~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~--~~~--~~~l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~~------ 81 (530)
.+...+.|++++.|+.++-=|=.+...+|. +.. .+++...+.. +.|+++-++..+++-||-+...-++.
T Consensus 822 ~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k~~LV 901 (1702)
T KOG0915|consen 822 LLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLKKSLV 901 (1702)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhHHHHH
Confidence 444566799999999875544455566662 111 2244444444 55666666666665554322211000
Q ss_pred ------------------------------------c--------------chhcchhHHHhhhccc-chHHHHHHHHHH
Q 009632 82 ------------------------------------E--------------HAHVLLPPLETLCTVE-ETCVRDKAVESL 110 (530)
Q Consensus 82 ------------------------------------~--------------~~~~l~~~l~~l~~d~-~~~vR~~a~~~l 110 (530)
. ..+.++--|+++.++. .+.-|..|+-++
T Consensus 902 ~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~GaAfGf 981 (1702)
T KOG0915|consen 902 DSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKKGAAFGF 981 (1702)
T ss_pred HHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhcccchhhch
Confidence 0 0022223355666553 688899999999
Q ss_pred HHHHhhcChh--hhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCC---hHHHHHHHHHHHhhcCCCChhHHHHHHH
Q 009632 111 CRIGSQMRES--DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAP---DILKTELRSIYTQLCQDDMPMVRRSAAS 185 (530)
Q Consensus 111 ~~l~~~~~~~--~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~---~~~~~~l~~~l~~l~~d~~~~vR~~a~~ 185 (530)
+.|++....+ .....++|.+-+.--|++..++.+...+...+..... +++.++|+.-++.-+.+..|+||.++|.
T Consensus 982 ~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReascl 1061 (1702)
T KOG0915|consen 982 GAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCL 1061 (1702)
T ss_pred HHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 9999876442 2234467777777789999999988888888876533 4588999999999999999999999999
Q ss_pred HHHHHHhhhcchhhHH---HHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc----------hhhhhccHHHHHH-hcC
Q 009632 186 NLGKFAATVEPAHLKT---DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP----------QDCVAHILPVIVN-FSQ 251 (530)
Q Consensus 186 ~l~~l~~~~~~~~~~~---~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~----------~~~~~~~~~~l~~-~~~ 251 (530)
++..+...-+.+.+.+ ++...+...+.|-.+.||.+|-.+...+++.+-. ......++|++.. ..-
T Consensus 1062 AL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gim 1141 (1702)
T KOG0915|consen 1062 ALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIM 1141 (1702)
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcc
Confidence 9999998866655544 4455555667777889999988887777765421 3456668888754 344
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCcc--cccchHHHHHHhcCCCcHHH-------------------HHHHHHH------H
Q 009632 252 DKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRDNEAEV-------------------RIAAAGK------V 304 (530)
Q Consensus 252 d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~v-------------------r~~a~~~------l 304 (530)
++...||+.+..++..+++..|... +..+++|.+.+....-+|.| |..++++ +
T Consensus 1142 s~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi 1221 (1702)
T KOG0915|consen 1142 SKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETI 1221 (1702)
T ss_pred cchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHH
Confidence 7778999999999999999988753 45678898888877666555 3333322 2
Q ss_pred HHHHHhhCHHHHHhhhhHhHhHhccC-CcHHHHHHHHHHHHhhccccCHH--HHHHhHHHHHHHhhcCCChHHHHHHHHh
Q 009632 305 TKFCRILNPELAIQHILPCVKELSSD-SSQHVRSALASVIMGMAPLLGKD--ATIEQLLPIFLSLLKDEFPDVRLNIISK 381 (530)
Q Consensus 305 ~~~~~~~~~~~~~~~l~~~l~~~~~d-~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~ 381 (530)
+.+...++. ..++.++|.+.+++.. -.-..|.+++..+..+...+|.+ .+..+++..++..++|.++.+|.+...+
T Consensus 1222 ~~ci~~iD~-~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsA 1300 (1702)
T KOG0915|consen 1222 NKCINYIDI-SVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASA 1300 (1702)
T ss_pred HHHHHhhhH-HHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHH
Confidence 222222222 3457788888877654 34567888889998888888764 5678899999999999999999999999
Q ss_pred hHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCh--hhHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 009632 382 LDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV--GFFDDKLGALCMQWLQDKVYSIRDAAANN 459 (530)
Q Consensus 382 l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~--~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~ 459 (530)
++.+.+.-.++...+.+-..+..++.+.+. .+..++..+..++..... +.+...++|.++-...+.. ++-...
T Consensus 1301 mG~L~k~Ss~dq~qKLie~~l~~~l~k~es-~~siscatis~Ian~s~e~Lkn~asaILPLiFLa~~ee~----Ka~q~L 1375 (1702)
T KOG0915|consen 1301 MGYLAKFSSPDQMQKLIETLLADLLGKDES-LKSISCATISNIANYSQEMLKNYASAILPLIFLAMHEEE----KANQEL 1375 (1702)
T ss_pred HHHHHhcCChHHHHHHHHHHHHHHhccCCC-ccchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHhHHH----HHHHHH
Confidence 999999888777655555555555554433 225555555555443321 1234668998877666542 222222
Q ss_pred HHHHHHHh--Chh-----HHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcC
Q 009632 460 LKRLAEEF--GPE-----WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG 507 (530)
Q Consensus 460 l~~l~~~~--~~~-----~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~ 507 (530)
...+...+ |.. ...+.+.+...+..++..|.+|..+..++..++....
T Consensus 1376 w~dvW~e~vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~~s 1430 (1702)
T KOG0915|consen 1376 WNDVWAELVSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAEGLS 1430 (1702)
T ss_pred HHHHHHHhCCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHccccc
Confidence 33333322 111 1224455666667788889999999999888876543
No 34
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.72 E-value=4.4e-16 Score=155.60 Aligned_cols=271 Identities=20% Similarity=0.217 Sum_probs=160.6
Q ss_pred ChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc------hhhhhccHHHHHHh
Q 009632 176 MPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP------QDCVAHILPVIVNF 249 (530)
Q Consensus 176 ~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~------~~~~~~~~~~l~~~ 249 (530)
...-|..|++.|..++.+...+...+.++|+++.++.|++..||..|++++..+...+.+ ..|.++++|.+..+
T Consensus 436 ~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l 515 (1431)
T KOG1240|consen 436 TIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHL 515 (1431)
T ss_pred cchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhh
Confidence 456788999999999999999999999999999999999999999999999988776543 45778999999999
Q ss_pred cCC-CCHHHHHHHHHHHHHHHHHhCCcc------------------c---------c----cchHHHHHHhcCCCcHHHH
Q 009632 250 SQD-KSWRVRYMVANQLYELCEAVGPEP------------------T---------R----MDLVPAYVRLLRDNEAEVR 297 (530)
Q Consensus 250 ~~d-~~~~vr~~~~~~l~~l~~~~~~~~------------------~---------~----~~l~~~l~~~l~d~~~~vr 297 (530)
..| ....||.+.+.+|+.++.....-. + . ..+-..+..++.|+.+.||
T Consensus 516 ~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vk 595 (1431)
T KOG1240|consen 516 LNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVK 595 (1431)
T ss_pred hccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHH
Confidence 999 677899999999999886521100 0 0 0112222334444444555
Q ss_pred HHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHH
Q 009632 298 IAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLN 377 (530)
Q Consensus 298 ~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~ 377 (530)
.+.++++..+|..+|.+.--..+++.+..+++|++|+.|.+..+.+..++-.+|.....+.++|++.+.|.|..+.|-..
T Consensus 596 r~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~Viv~ 675 (1431)
T KOG1240|consen 596 RALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEAVIVS 675 (1431)
T ss_pred HHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchhhHHH
Confidence 55555555555555544443444444555555555555555555554444444444444455555555555555555555
Q ss_pred HHHhhHHhhhhhchh-HHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhc
Q 009632 378 IISKLDQVNQVIGID-LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ 446 (530)
Q Consensus 378 a~~~l~~l~~~~~~~-~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~ 446 (530)
|+.++..+++.---+ ....+++.....++-.+|-.+|.+++..+..++..++.....-.++|++-.++.
T Consensus 676 aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~irpfl~ 745 (1431)
T KOG1240|consen 676 ALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRPFLE 745 (1431)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHHhhh
Confidence 544444444421111 111223333333344444445555555555554444444444444444444443
No 35
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=7.7e-14 Score=131.27 Aligned_cols=344 Identities=15% Similarity=0.131 Sum_probs=252.1
Q ss_pred HHHHHHHHHhhcC-CCChhHHHHHHHHHHHHHhhhcc---hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc-
Q 009632 161 KTELRSIYTQLCQ-DDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP- 235 (530)
Q Consensus 161 ~~~l~~~l~~l~~-d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~- 235 (530)
...++|.+.+.+. +.++.++..|+.+|.+++..-.. .......+|.|.+++.+++..|++.|+.+|+.++..-+.
T Consensus 107 ~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~ 186 (514)
T KOG0166|consen 107 QSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDC 186 (514)
T ss_pred HcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHH
Confidence 4457777777664 77899999999999999874332 233456889999999999999999999999998865432
Q ss_pred --hhhhhccHHHHHHhcCCCC-HHHHHHHHHHHHHHHHHhCCcc---cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 009632 236 --QDCVAHILPVIVNFSQDKS-WRVRYMVANQLYELCEAVGPEP---TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCR 309 (530)
Q Consensus 236 --~~~~~~~~~~l~~~~~d~~-~~vr~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~ 309 (530)
-.....+++.+..++.... -...+.+.+++.+++..-.+.. ....++|.+..++.+.+++|...|+.++..+..
T Consensus 187 Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsd 266 (514)
T KOG0166|consen 187 RDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTD 266 (514)
T ss_pred HHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 1122335666666665544 3677889999999998753322 245799999999999999999999999999986
Q ss_pred hhCHH---HHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHH---HHHHhHHHHHHHhhc-CCChHHHHHHHHhh
Q 009632 310 ILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSLLK-DEFPDVRLNIISKL 382 (530)
Q Consensus 310 ~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l 382 (530)
.-... .+...++|.+.+++...+..++..+++.++.++..-+.. -.....+|.+..++. .+...+|..|+.++
T Consensus 267 g~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~i 346 (514)
T KOG0166|consen 267 GSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTI 346 (514)
T ss_pred CChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHH
Confidence 43332 234567899999999999999999999999976433211 124467899999998 55667999999999
Q ss_pred HHhhhhhch---hHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhH----HHHHHHHHHHHhcCCcHHHHHH
Q 009632 383 DQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF----DDKLGALCMQWLQDKVYSIRDA 455 (530)
Q Consensus 383 ~~l~~~~~~---~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~----~~~~~~~l~~~l~d~~~~Vr~~ 455 (530)
+++...-.. ..+...++|.+...++..++++|..|+++++++...-.++.. ...+++.+..+|.-++..+-..
T Consensus 347 SNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v 426 (514)
T KOG0166|consen 347 SNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILV 426 (514)
T ss_pred HHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHH
Confidence 998763211 112357899999999999999999999999999876654442 2346777778887667766677
Q ss_pred HHHHHHHHHHHh---Ch---hHHh-----hhhHHHHHhhccCCChHHHHHHHHHHHHHhh
Q 009632 456 AANNLKRLAEEF---GP---EWAM-----QHITPQVLEMINNPHYLYRMTILRAISLLAP 504 (530)
Q Consensus 456 a~~~l~~l~~~~---~~---~~~~-----~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~ 504 (530)
++.++..|.+.. +. .... ..-+..+..+.++.|.++...|...+.+...
T Consensus 427 ~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~ 486 (514)
T KOG0166|consen 427 ALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFS 486 (514)
T ss_pred HHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcC
Confidence 777777666543 21 1111 2335566666777888899888888887654
No 36
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=1.1e-13 Score=130.23 Aligned_cols=341 Identities=15% Similarity=0.181 Sum_probs=256.6
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc----hhhHHHHHHHHHHhhc-CCchhHHHHHHHHHHHHhhhcCch---
Q 009632 165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEP----AHLKTDIMSIFEDLTQ-DDQDSVRLLAVEGCAALGKLLEPQ--- 236 (530)
Q Consensus 165 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~~~~--- 236 (530)
.+.....+.+.++..+..+...+..+...-.. +.....++|.+.+.+. +.++.++..|..+|..++......
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 34444555555666677777777777654433 2334568899999886 667899999999999999876542
Q ss_pred hhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC---CcccccchHHHHHHhcCCCcH-HHHHHHHHHHHHHHHhhC
Q 009632 237 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLLRDNEA-EVRIAAAGKVTKFCRILN 312 (530)
Q Consensus 237 ~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~~~~~~~ 312 (530)
......+|.+..++.+++..|+..+.++|++++.... +-......++.++.++..+.+ .....+.++|..++..-.
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~ 227 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKN 227 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCC
Confidence 2345689999999999999999999999999974321 111233567777777776664 677789999999998763
Q ss_pred HH---HHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHH---HHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhh
Q 009632 313 PE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN 386 (530)
Q Consensus 313 ~~---~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 386 (530)
+. .....++|.+..++.+.+..|..-++.+++.+....... .....+.|.+..+|...+..++..|+.+++++.
T Consensus 228 P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIv 307 (514)
T KOG0166|consen 228 PSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIV 307 (514)
T ss_pred CCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhcccee
Confidence 32 345788999999999999999999999999887644322 224467899999999999999999999999976
Q ss_pred hhhchh---HHHhhHHHHHHHHhc-CCChHHHHHHHHHHHHHHhhhCh---hhHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 009632 387 QVIGID---LLSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQDKVYSIRDAAANN 459 (530)
Q Consensus 387 ~~~~~~---~~~~~l~~~l~~~~~-~~~~~~R~~~~~~l~~l~~~~~~---~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~ 459 (530)
..-+.. -+....+|.|..++. ++...+|..|+++++++...-.. ..+...++|.+.+++...+..+|..|+.+
T Consensus 308 tG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawa 387 (514)
T KOG0166|consen 308 TGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWA 387 (514)
T ss_pred eccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHH
Confidence 432221 123567889988887 56677999999999999862221 11345689999999999999999999999
Q ss_pred HHHHHHHhChhHH----hhhhHHHHHhhccCCChHHHHHHHHHHHHHhhh
Q 009632 460 LKRLAEEFGPEWA----MQHITPQVLEMINNPHYLYRMTILRAISLLAPV 505 (530)
Q Consensus 460 l~~l~~~~~~~~~----~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~ 505 (530)
++.+.....+++. ...+++.+..++.-++.++-..++.++.++.+.
T Consensus 388 IsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~ 437 (514)
T KOG0166|consen 388 ISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKV 437 (514)
T ss_pred HHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHH
Confidence 9998877554432 256788888888777888888888888888664
No 37
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=2.5e-12 Score=123.85 Aligned_cols=459 Identities=17% Similarity=0.126 Sum_probs=283.1
Q ss_pred HHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhccccccc-cccCCchHHHHHHHHHHhcccccCCCccchhcchhH
Q 009632 12 AVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLS-ENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPP 90 (530)
Q Consensus 12 ~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~-~~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~ 90 (530)
..|.+-|.|........|++.|-.+..+ | ++ ...+.|.+- ....+|.+|++.+-..|-.+++. .++..-.=+..
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~-G-~d-vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEe--qpdLALLSInt 112 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAK-G-KD-VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEE--QPDLALLSINT 112 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhc-C-Cc-HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhc--CCCceeeeHHH
Confidence 4677778888888999999887664322 2 22 345555544 47789999999999888888762 22222222466
Q ss_pred HHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChHHHHHHHHHHHh
Q 009632 91 LETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQ 170 (530)
Q Consensus 91 l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~ 170 (530)
+..-+.|+++.+|..|+.++..| .-..+.+.++-.++....|+++.||..|+.++..+... +++...++...+..
T Consensus 113 fQk~L~DpN~LiRasALRvlSsI----Rvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsL-d~e~k~qL~e~I~~ 187 (968)
T KOG1060|consen 113 FQKALKDPNQLIRASALRVLSSI----RVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSL-DPEQKDQLEEVIKK 187 (968)
T ss_pred HHhhhcCCcHHHHHHHHHHHHhc----chhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcC-ChhhHHHHHHHHHH
Confidence 88888999999999999988877 22334556667778888899999999999999888865 44455599999999
Q ss_pred hcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhc-C-c-------------
Q 009632 171 LCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLL-E-P------------- 235 (530)
Q Consensus 171 l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~-~-~------------- 235 (530)
++.|.++.|--+|+.++..++..-- .....-+..+.+++.|-++==+...+..|...+++. . +
T Consensus 188 LLaD~splVvgsAv~AF~evCPerl--dLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~ 265 (968)
T KOG1060|consen 188 LLADRSPLVVGSAVMAFEEVCPERL--DLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRS 265 (968)
T ss_pred HhcCCCCcchhHHHHHHHHhchhHH--HHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCccc
Confidence 9999999999999998888764211 111112223334444433323444455555555432 1 1
Q ss_pred ----------------hhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHH
Q 009632 236 ----------------QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIA 299 (530)
Q Consensus 236 ----------------~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~ 299 (530)
+.-...++.....++.+.++.|-.++++.+..++... ....+...+++++..+ .+++.-
T Consensus 266 ~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~----~~~~i~kaLvrLLrs~-~~vqyv 340 (968)
T KOG1060|consen 266 CNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN----QVTKIAKALVRLLRSN-REVQYV 340 (968)
T ss_pred ccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH----HHHHHHHHHHHHHhcC-Ccchhh
Confidence 0112236666677888888889888888888877542 2345677778877765 478888
Q ss_pred HHHHHHHHHHhhCH--------------------------------HHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhc
Q 009632 300 AAGKVTKFCRILNP--------------------------------ELAIQHILPCVKELSSDSSQHVRSALASVIMGMA 347 (530)
Q Consensus 300 a~~~l~~~~~~~~~--------------------------------~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~ 347 (530)
.++++..++..-.. +.-...+++-+...+++.+.++-..++++++..+
T Consensus 341 vL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA 420 (968)
T KOG1060|consen 341 VLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCA 420 (968)
T ss_pred hHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 88888777653210 0001223333333334444455566666666665
Q ss_pred cccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCC-ChHHHHHHHHHHHHHHh
Q 009632 348 PLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLAS 426 (530)
Q Consensus 348 ~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~-~~~~R~~~~~~l~~l~~ 426 (530)
...+ .+.+..+.-+..+++..+..|-..++..+..+.+.-..+. ..++..|.+++..- -+.-|...++.++..+.
T Consensus 421 ~~~~--sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h--~~ii~~La~lldti~vp~ARA~IiWLige~~e 496 (968)
T KOG1060|consen 421 SRIG--SVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEH--LEILFQLARLLDTILVPAARAGIIWLIGEYCE 496 (968)
T ss_pred HhhC--chhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHH--HHHHHHHHHHhhhhhhhhhhceeeeeehhhhh
Confidence 5544 2334555566666666666666666666666655432222 23444454444332 24455555666655554
Q ss_pred hhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhc-cCCChHHHHHH
Q 009632 427 QLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI-NNPHYLYRMTI 495 (530)
Q Consensus 427 ~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~-~d~~~~vr~~a 495 (530)
... ....+++..+.+-+.|....||...+..-..+.-.-..+ ...+...+..+. .|++|++|..+
T Consensus 497 ~vp--ri~PDVLR~laksFs~E~~evKlQILnL~aKLyl~~~~~--~kll~~Yv~~L~~yD~sYDiRDRa 562 (968)
T KOG1060|consen 497 IVP--RIAPDVLRKLAKSFSDEGDEVKLQILNLSAKLYLTNIDQ--TKLLVQYVFELARYDLSYDIRDRA 562 (968)
T ss_pred hcc--hhchHHHHHHHHhhccccchhhHHHHHhhhhheEechhh--HHHHHHHHHHHhccCCCcchhHHH
Confidence 322 123445555566667888888888887766654332211 233444555544 37888887754
No 38
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.56 E-value=1.3e-10 Score=114.86 Aligned_cols=359 Identities=16% Similarity=0.168 Sum_probs=243.7
Q ss_pred HHHHhHhhhhcCCCChH-HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc---hhhHHHHHHHHHHhhcCCchhH
Q 009632 143 VSACGLFHIAYPSAPDI-LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQDSV 218 (530)
Q Consensus 143 ~~~~~~l~~l~~~~~~~-~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~v 218 (530)
..++.++..+....... ..+++.+.+...+..+++.||..++..++.++..-.. -.....+++.+...+.|++..|
T Consensus 56 ~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~V 135 (503)
T PF10508_consen 56 ELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSV 135 (503)
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHH
Confidence 45667777777666554 5788889999999999999999999999888754322 1123568899999999999999
Q ss_pred HHHHHHHHHHHhhhcCc-h-hhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcc---cccchHHHHHHhcCCCc
Q 009632 219 RLLAVEGCAALGKLLEP-Q-DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP---TRMDLVPAYVRLLRDNE 293 (530)
Q Consensus 219 r~~a~~~l~~l~~~~~~-~-~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~ 293 (530)
...|+.++..++..-.. + -+.+...+.+..++...+..+|..++..+..++....... ....+++.++..+++++
T Consensus 136 a~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dD 215 (503)
T PF10508_consen 136 AKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDD 215 (503)
T ss_pred HHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCcc
Confidence 99999999999875332 1 1233447778888877677888888888888876533211 12358899999999988
Q ss_pred HHHHHHHHHHHHHHHHhhCHHH-H-HhhhhHhHhHhcc----CC-cHHHH-HHHHHHHHhhccccCHH--HHHHhHHHHH
Q 009632 294 AEVRIAAAGKVTKFCRILNPEL-A-IQHILPCVKELSS----DS-SQHVR-SALASVIMGMAPLLGKD--ATIEQLLPIF 363 (530)
Q Consensus 294 ~~vr~~a~~~l~~~~~~~~~~~-~-~~~l~~~l~~~~~----d~-~~~vr-~~~~~~l~~l~~~~~~~--~~~~~l~~~l 363 (530)
.-++.+++..+..++..-..-. + ...+++.+.+++. |+ ...+. .+.+..++.++..-+.. ...+.++..+
T Consensus 216 iLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l 295 (503)
T PF10508_consen 216 ILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERL 295 (503)
T ss_pred HHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 8999999999999987322111 1 2335555555543 33 11111 23335555555542221 1245677777
Q ss_pred HHhhcCCChHHHHHHHHhhHHhhhhhchhH-H-------HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCh---hh
Q 009632 364 LSLLKDEFPDVRLNIISKLDQVNQVIGIDL-L-------SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GF 432 (530)
Q Consensus 364 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-~-------~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~---~~ 432 (530)
..++...+...+..|+++++.++....... + .+.++..+.....+....+|..++++++.+...... +.
T Consensus 296 ~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~ 375 (503)
T PF10508_consen 296 FSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDND 375 (503)
T ss_pred HHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHH
Confidence 888889999999999999999985432211 1 133455555556667778999999999999654332 00
Q ss_pred H---HHH--------HHH-HHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHh------hhhHHHHHhhccCCChHHHHH
Q 009632 433 F---DDK--------LGA-LCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM------QHITPQVLEMINNPHYLYRMT 494 (530)
Q Consensus 433 ~---~~~--------~~~-~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~------~~i~~~l~~~~~d~~~~vr~~ 494 (530)
. ... -.. .++.+++.|-+++|.++...+..++.. +|.. ..++..+.+.-.++++..++.
T Consensus 376 i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~---~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~ 452 (503)
T PF10508_consen 376 ILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQ---PWGQREICSSPGFIEYLLDRSTETTKEGKEA 452 (503)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcC---HHHHHHHHhCccHHhhhcCCCCCCCHHHHHH
Confidence 0 000 111 778888999999999999999988854 3433 445666665556667766665
Q ss_pred HHHHHHHHhh
Q 009632 495 ILRAISLLAP 504 (530)
Q Consensus 495 a~~~l~~i~~ 504 (530)
=...+..+..
T Consensus 453 K~~ii~~l~~ 462 (503)
T PF10508_consen 453 KYDIIKALAK 462 (503)
T ss_pred HHHHHHHHHh
Confidence 5555555553
No 39
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=1.1e-12 Score=115.38 Aligned_cols=376 Identities=17% Similarity=0.126 Sum_probs=255.6
Q ss_pred ccccccccccCCchHHHHHHHHHHhcccccCCCccchhcch---hHHHhhhcccchHHHHHHHHHHHHHHhhcChhh-h-
Q 009632 48 ELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLL---PPLETLCTVEETCVRDKAVESLCRIGSQMRESD-L- 122 (530)
Q Consensus 48 ~l~~~l~~~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~---~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~-~- 122 (530)
..-|.+.-+.+.++.++..++.++|+++-..+..-..-.+. +++.+..+| ...||-.|+.|+-+++..-.... +
T Consensus 86 s~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd-~vevqcnaVgCitnLaT~d~nk~kiA 164 (550)
T KOG4224|consen 86 SNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTD-GVEVQCNAVGCITNLATFDSNKVKIA 164 (550)
T ss_pred hhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCC-CcEEEeeehhhhhhhhccccchhhhh
Confidence 33444444667888999999999999887655433333333 355555555 46788889999999887622211 1
Q ss_pred -hhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChHHH-----HHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc
Q 009632 123 -VDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILK-----TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP 196 (530)
Q Consensus 123 -~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~-----~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~ 196 (530)
...+.|+.. +.+.++.++|..+...+..+... .+.+ ..-+|.+..++...++.||+.++.+++.++-.-..
T Consensus 165 ~sGaL~pltr-LakskdirvqrnatgaLlnmThs--~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~ 241 (550)
T KOG4224|consen 165 RSGALEPLTR-LAKSKDIRVQRNATGALLNMTHS--RENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRA 241 (550)
T ss_pred hccchhhhHh-hcccchhhHHHHHHHHHHHhhhh--hhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHH
Confidence 233666666 88888888888887777655432 1222 23458899999999999999999999998753322
Q ss_pred ----hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc--hhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 009632 197 ----AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCE 270 (530)
Q Consensus 197 ----~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~ 270 (530)
....+.++|.+.+++.|+++.++..|.-++..++..... +.....-+|.+.++++++.-..-.+...++.+++-
T Consensus 242 Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisi 321 (550)
T KOG4224|consen 242 RKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISI 321 (550)
T ss_pred HHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhccc
Confidence 122356999999999999999999999999988764332 33345578999999988765555555667766665
Q ss_pred HhCCcc--cccchHHHHHHhcCCCc-HHHHHHHHHHHHHHHHhhCHH---HHHhhhhHhHhHhccCCcHHHHHHHHHHHH
Q 009632 271 AVGPEP--TRMDLVPAYVRLLRDNE-AEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIM 344 (530)
Q Consensus 271 ~~~~~~--~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~ 344 (530)
.-+.+. ....++..+++++.-.+ .+++.+|...|..++...... .+...-+|.+..++-|..-.+|..+-.++.
T Consensus 322 hplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a 401 (550)
T KOG4224|consen 322 HPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIA 401 (550)
T ss_pred ccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHH
Confidence 544332 23356777888887554 459999999998887644322 233455778888888988888887777777
Q ss_pred hhccc--cCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh------H--HHhhHHHHHHHHhcCCChHHH
Q 009632 345 GMAPL--LGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID------L--LSQSLLPAIVELAEDRHWRVR 414 (530)
Q Consensus 345 ~l~~~--~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~------~--~~~~l~~~l~~~~~~~~~~~R 414 (530)
.++-. .........++|.++.+..+.+.+||..++.++.+++...... | -.+.+-..+..++.+....+|
T Consensus 402 ~Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~ 481 (550)
T KOG4224|consen 402 QLALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLARFLASHELTFR 481 (550)
T ss_pred HHHhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHH
Confidence 66532 2223345578999999999999999999999999987643210 0 012334445555555555566
Q ss_pred HHHHHHHHHHHhh
Q 009632 415 LAIIEYIPLLASQ 427 (530)
Q Consensus 415 ~~~~~~l~~l~~~ 427 (530)
..+.+++.++...
T Consensus 482 hia~wTI~qLle~ 494 (550)
T KOG4224|consen 482 HIARWTIQQLLED 494 (550)
T ss_pred HHHHHHHHHHHHh
Confidence 6666666555543
No 40
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=5.5e-10 Score=112.02 Aligned_cols=422 Identities=15% Similarity=0.079 Sum_probs=264.7
Q ss_pred hhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCC--CChHHH
Q 009632 84 AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPS--APDILK 161 (530)
Q Consensus 84 ~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~--~~~~~~ 161 (530)
.+.++..|...++|.+..||..|+++++++...++.+-..+.+...+..+..-+.+..-+.+|.+++.++.. +.+...
T Consensus 339 vE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l 418 (1133)
T KOG1943|consen 339 VEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLL 418 (1133)
T ss_pred HHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHH
Confidence 345666777788999999999999999999999997666666666666444444566777899999998754 456677
Q ss_pred HHHHHHHHhhcC--------CCChhHHHHHHHHHHHHHhhhcchhh---HHHHHH-HHHHhhcCCchhHHHHHHHHHHHH
Q 009632 162 TELRSIYTQLCQ--------DDMPMVRRSAASNLGKFAATVEPAHL---KTDIMS-IFEDLTQDDQDSVRLLAVEGCAAL 229 (530)
Q Consensus 162 ~~l~~~l~~l~~--------d~~~~vR~~a~~~l~~l~~~~~~~~~---~~~l~~-~l~~~~~d~~~~vr~~a~~~l~~l 229 (530)
.+++|.+.+.+. .....||.+|+..+=+++....+... .+.+.+ .+...+-|.+-.+|.+|..++-..
T Consensus 419 ~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~ 498 (1133)
T KOG1943|consen 419 EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQEN 498 (1133)
T ss_pred HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHH
Confidence 889998887664 34567999999999999987766433 333333 445567899889998887766554
Q ss_pred hhhcCc-----h-------------------------hhhhccHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHhCCc
Q 009632 230 GKLLEP-----Q-------------------------DCVAHILPVIVNFS----QDKSWRVRYMVANQLYELCEAVGPE 275 (530)
Q Consensus 230 ~~~~~~-----~-------------------------~~~~~~~~~l~~~~----~d~~~~vr~~~~~~l~~l~~~~~~~ 275 (530)
....|. + .+..+.-|.+..++ .+.+..+|..++.+|.++...-.+.
T Consensus 499 VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~ 578 (1133)
T KOG1943|consen 499 VGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKY 578 (1133)
T ss_pred hccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHh
Confidence 332211 1 11222334444443 4557789999999999977654433
Q ss_pred ccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH----------HH--HhhhhHhHhHhccCC--cHHHHHHHHH
Q 009632 276 PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----------LA--IQHILPCVKELSSDS--SQHVRSALAS 341 (530)
Q Consensus 276 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~----------~~--~~~l~~~l~~~~~d~--~~~vr~~~~~ 341 (530)
. ....+|.++......+...|..+..+.+.+...+-.- .+ ...++|.+...--.+ ..-.|.+...
T Consensus 579 ~-a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~~ 657 (1133)
T KOG1943|consen 579 L-ADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQATLK 657 (1133)
T ss_pred h-cccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHHHHH
Confidence 2 4456677777777777888888888887776543110 00 111222221111111 1234555555
Q ss_pred HHHhhcccc---CHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhh--chhHHHhhHHHHHHHHhcCC-ChHHHH
Q 009632 342 VIMGMAPLL---GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI--GIDLLSQSLLPAIVELAEDR-HWRVRL 415 (530)
Q Consensus 342 ~l~~l~~~~---~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~--~~~~~~~~l~~~l~~~~~~~-~~~~R~ 415 (530)
.+..+...- ..+++......++.+.+.+.+ .+|..+.++++.++..+ +.+.....++......+.+. +.++|.
T Consensus 658 ~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~~~~r~ 736 (1133)
T KOG1943|consen 658 FIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCSEERIRR 736 (1133)
T ss_pred HHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCchHHHHHH
Confidence 554443221 123444445555666665555 89999999999998654 22222223444444444444 778888
Q ss_pred HHHHHHHHHHhhhChhhHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHHhChh-------HHhhhhHHHHHhhccCC
Q 009632 416 AIIEYIPLLASQLGVGFFDDKLGALCMQWL-QDKVYSIRDAAANNLKRLAEEFGPE-------WAMQHITPQVLEMINNP 487 (530)
Q Consensus 416 ~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l-~d~~~~Vr~~a~~~l~~l~~~~~~~-------~~~~~i~~~l~~~~~d~ 487 (530)
....+++.+....=.....+.+-..++... .|..++-|...+.++..++...+.. .+.+.++.++.+...|.
T Consensus 737 g~~lal~~lp~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYttd~ 816 (1133)
T KOG1943|consen 737 GLILALGVLPSELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYTTDS 816 (1133)
T ss_pred HHHHHHccCcHHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhccccc
Confidence 888888776543333333344433343333 3447788999999999998887621 12244455555544443
Q ss_pred ----ChHHHHHHHHHHHHHhhhcC
Q 009632 488 ----HYLYRMTILRAISLLAPVMG 507 (530)
Q Consensus 488 ----~~~vr~~a~~~l~~i~~~~~ 507 (530)
...||+.|+.++..+.....
T Consensus 817 rGDVGswVReaAm~al~~~~~~l~ 840 (1133)
T KOG1943|consen 817 RGDVGSWVREAAMKALSSLLDTLS 840 (1133)
T ss_pred CccHHHHHHHHHHHHHHhhhhhhc
Confidence 44699999999999876554
No 41
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=99.47 E-value=3.6e-10 Score=105.62 Aligned_cols=466 Identities=11% Similarity=0.073 Sum_probs=282.5
Q ss_pred HHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhccccc-cccccCCch-HHHHHHHHHHhcccccCCCccchhcchhH
Q 009632 13 VLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPF-LSENNDDDD-EVLLAMAEELGVFIPYVGGVEHAHVLLPP 90 (530)
Q Consensus 13 ~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~-l~~~~d~~~-~vr~~~~~~l~~~~~~~~~~~~~~~l~~~ 90 (530)
.++...++.|+..|+....++.+++..- .+.. ....- +.+++...+ .+|..|.+.|-.+.. .+....+-.+
T Consensus 69 ~i~KlFQhkd~~Lrq~VY~aIkelS~~t-edvl--m~tssiMkD~~~g~~~~~kp~AiRsL~~Vid----~~tv~~~er~ 141 (898)
T COG5240 69 AILKLFQHKDLYLRQCVYSAIKELSKLT-EDVL--MGTSSIMKDLNGGVPDDVKPMAIRSLFSVID----GETVYDFERY 141 (898)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHhhcc-hhhh--HHHHHHHHhhccCCccccccHHHHHHHHhcC----cchhhhHHHH
Confidence 4556677999999998777777664321 1111 00111 222333333 456666655544433 1223344445
Q ss_pred HHhhhcccchHHHHHHHHHHHHHHhh-------cChhhhhhhHHHHHHHHh---------cCCccchhHHHHhHhhhhcC
Q 009632 91 LETLCTVEETCVRDKAVESLCRIGSQ-------MRESDLVDWYIPLVKRLA---------AGEWFTARVSACGLFHIAYP 154 (530)
Q Consensus 91 l~~l~~d~~~~vR~~a~~~l~~l~~~-------~~~~~~~~~l~~~l~~l~---------~~~~~~~r~~~~~~l~~l~~ 154 (530)
+.+..-++...+|.+|+-.--.+... |..+..+. ++. +.+.. .+.++-.+++|..++..+-+
T Consensus 142 l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~~rw~ne~qea-v~~-l~q~p~~~~n~gy~Pn~~~isqYHalGlLyq~kr 219 (898)
T COG5240 142 LNQAFVSTSMARRSAALVVAYHLLPNNFNQTKRWLNETQEA-VLD-LKQFPNQHGNEGYEPNGNPISQYHALGLLYQSKR 219 (898)
T ss_pred hhhhccccchhhhhhHHHHhhhhccccHHHHHHHHHHHHHH-Hhh-HhhCcCccCCcccCCCCChHHHHHHHHHHHHHhc
Confidence 66666788888888876433333221 11111111 111 11111 11123445566666655433
Q ss_pred CCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhc-chhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhc
Q 009632 155 SAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVE-PAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLL 233 (530)
Q Consensus 155 ~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~-~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~ 233 (530)
.-. -....++..+.. ..+-.-..+-+..+......+. +..+...+.|++...++|.-+.|...+++++..++...
T Consensus 220 ~dk-ma~lklv~hf~~---n~smknq~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~n 295 (898)
T COG5240 220 TDK-MAQLKLVEHFRG---NASMKNQLAGVLLVRATVELLKENSQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEEN 295 (898)
T ss_pred ccH-HHHHHHHHHhhc---ccccccchhheehHHHHHHHHHhChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhc
Confidence 211 011122222221 1111111122222222222222 24456778899999999988889999999999888665
Q ss_pred CchhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH
Q 009632 234 EPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP 313 (530)
Q Consensus 234 ~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~ 313 (530)
-...+....+..+..+++......|-++...|.+++...+.... ..-+-+..++.|.+. ..+..++..+.+. |.
T Consensus 296 v~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~--vcN~evEsLIsd~Nr---~IstyAITtLLKT-Gt 369 (898)
T COG5240 296 VGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVS--VCNKEVESLISDENR---TISTYAITTLLKT-GT 369 (898)
T ss_pred cCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceee--ecChhHHHHhhcccc---cchHHHHHHHHHc-Cc
Confidence 33345677888889999999999999999999999987655432 233556667777764 4455566666554 44
Q ss_pred HHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhc-CCChHHHHHHHHhhHHhhhhhchh
Q 009632 314 ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK-DEFPDVRLNIISKLDQVNQVIGID 392 (530)
Q Consensus 314 ~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~ 392 (530)
+.-...++..+..++.|-+...+.-++.++..++..++.+. ..++.++...|. .+-.+.+..+++++..+.+....
T Consensus 370 ~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~--~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~- 446 (898)
T COG5240 370 EETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKK--LSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPD- 446 (898)
T ss_pred hhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHH--HHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCch-
Confidence 44446777777777777777777777888888887776432 234455555444 45678999999999998877542
Q ss_pred HHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHH
Q 009632 393 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA 472 (530)
Q Consensus 393 ~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~ 472 (530)
..+..+..|+.++.|..+. +.++..++.+++..+...-....+.++.+-+-=.+.-||.+|+.+|..++-.....+.
T Consensus 447 -skEraLe~LC~fIEDcey~--~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~ 523 (898)
T COG5240 447 -SKERALEVLCTFIEDCEYH--QITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVS 523 (898)
T ss_pred -HHHHHHHHHHHHHhhcchh--HHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccccc
Confidence 2467788888888887654 4555666666554332222223344444433335667999999999988877666666
Q ss_pred hhhhHHHHHhhccCCChHHHHHHHHHHHHHh
Q 009632 473 MQHITPQVLEMINNPHYLYRMTILRAISLLA 503 (530)
Q Consensus 473 ~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~ 503 (530)
.+.+...+.++++|.+.+||..|..++..+-
T Consensus 524 ~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 524 PQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 7889999999999999999999998887764
No 42
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.47 E-value=2.7e-10 Score=112.59 Aligned_cols=370 Identities=15% Similarity=0.136 Sum_probs=239.5
Q ss_pred ccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChH----HHHHHHHHHHhhc
Q 009632 97 VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----LKTELRSIYTQLC 172 (530)
Q Consensus 97 d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~----~~~~l~~~l~~l~ 172 (530)
+.+.+.-..++.+|..+.....+......+.+.+...+.++++.+|..++..++.+....... ....+++.+..++
T Consensus 49 ~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L 128 (503)
T PF10508_consen 49 TSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCL 128 (503)
T ss_pred hcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHH
Confidence 334444466777788887777777666667788888888888888888877777766554332 2366888888889
Q ss_pred CCCChhHHHHHHHHHHHHHhhhcch--hhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCch---hhhhccHHHHH
Q 009632 173 QDDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ---DCVAHILPVIV 247 (530)
Q Consensus 173 ~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~ 247 (530)
.|++..|.+.|+.+|..++..-..- .+.+.+.+.+.+++...++.+|..+.+.+..++..-... .....+++.+.
T Consensus 129 ~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll 208 (503)
T PF10508_consen 129 RDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLL 208 (503)
T ss_pred cCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHH
Confidence 9999999999999999988753221 222334677778887777888988888888887654331 11234777777
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHHHhC-Ccc-cccchHHHHHHhcCCCcHHHH------HHHHHHHHHHHHhhCHHHH---
Q 009632 248 NFSQDKSWRVRYMVANQLYELCEAVG-PEP-TRMDLVPAYVRLLRDNEAEVR------IAAAGKVTKFCRILNPELA--- 316 (530)
Q Consensus 248 ~~~~d~~~~vr~~~~~~l~~l~~~~~-~~~-~~~~l~~~l~~~l~d~~~~vr------~~a~~~l~~~~~~~~~~~~--- 316 (530)
..+++++.-+|..+++.+..++..-. -+. ....+++.+.+.+.+.+.+-| -..++.++.++.. .+..+
T Consensus 209 ~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~-~~~~v~~~ 287 (503)
T PF10508_consen 209 KELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV-SPQEVLEL 287 (503)
T ss_pred HHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc-ChHHHHHH
Confidence 77888888899999999998887211 111 133466767776654322111 1222444444443 33322
Q ss_pred HhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHH--------HHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhh
Q 009632 317 IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDAT--------IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 388 (530)
Q Consensus 317 ~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~--------~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 388 (530)
.+.++..+..+.++.+...+..++.+++.++........ ...++..+.........++|..++.+++.+...
T Consensus 288 ~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~ 367 (503)
T PF10508_consen 288 YPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTS 367 (503)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhc
Confidence 244455555666778888999999999998865432222 234455555566677788999999999999643
Q ss_pred hch-----------hHHH---hhHHH-HHHHHhcCCChHHHHHHHHHHHHHHhh-hChhhHH--HHHHHHHHHHhcCCcH
Q 009632 389 IGI-----------DLLS---QSLLP-AIVELAEDRHWRVRLAIIEYIPLLASQ-LGVGFFD--DKLGALCMQWLQDKVY 450 (530)
Q Consensus 389 ~~~-----------~~~~---~~l~~-~l~~~~~~~~~~~R~~~~~~l~~l~~~-~~~~~~~--~~~~~~l~~~l~d~~~ 450 (530)
.+. .|+. +.-.. .+..+++.|.+.+|.++...+..++.. .|...+. ..++.+++.--.+.+.
T Consensus 368 ~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K 447 (503)
T PF10508_consen 368 GTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTK 447 (503)
T ss_pred CCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCH
Confidence 322 1111 11122 667778889999999999999998764 2333222 2244444444445666
Q ss_pred HHHHHHHHHHHHHHHHh
Q 009632 451 SIRDAAANNLKRLAEEF 467 (530)
Q Consensus 451 ~Vr~~a~~~l~~l~~~~ 467 (530)
..++.=..++..+....
T Consensus 448 ~~ke~K~~ii~~l~~~~ 464 (503)
T PF10508_consen 448 EGKEAKYDIIKALAKSS 464 (503)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 77777777777776443
No 43
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=4.6e-12 Score=111.57 Aligned_cols=343 Identities=15% Similarity=0.143 Sum_probs=246.6
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhH---HHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchh--
Q 009632 163 ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLK---TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD-- 237 (530)
Q Consensus 163 ~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~---~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~-- 237 (530)
+....+..++.+.++.+..++..++++++-.+++.... -.+-+.+.+.++|.. +||..++.++.+++..-+...
T Consensus 85 es~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~v-evqcnaVgCitnLaT~d~nk~ki 163 (550)
T KOG4224|consen 85 ESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGV-EVQCNAVGCITNLATFDSNKVKI 163 (550)
T ss_pred hhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCc-EEEeeehhhhhhhhccccchhhh
Confidence 34455566778889999999999999999888774332 235567778888764 688889999999887733211
Q ss_pred hhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC--cccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH-
Q 009632 238 CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE- 314 (530)
Q Consensus 238 ~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~- 314 (530)
-...-+..+..+-+.++.++|..+..++.++...-.. ......-+|.++.+++..+++||..+..+++.++-.-...
T Consensus 164 A~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk 243 (550)
T KOG4224|consen 164 ARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARK 243 (550)
T ss_pred hhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHH
Confidence 1122444556688888999999999998887754322 1223346899999999999999999999999886532221
Q ss_pred ---HHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCH--HHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhh
Q 009632 315 ---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI 389 (530)
Q Consensus 315 ---~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 389 (530)
...+.++|.+.++..|.+.+++..+.-++..++..-.. +.....-+|.+..+++++.-..-.+.+.++.++.-.-
T Consensus 244 ~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihp 323 (550)
T KOG4224|consen 244 ILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHP 323 (550)
T ss_pred HHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhccccc
Confidence 11256899999999999999999999999988764321 2233445899999999887666555555665554332
Q ss_pred chhH--HHhhHHHHHHHHhcCC-ChHHHHHHHHHHHHHHhhhC---hhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Q 009632 390 GIDL--LSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRL 463 (530)
Q Consensus 390 ~~~~--~~~~l~~~l~~~~~~~-~~~~R~~~~~~l~~l~~~~~---~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l 463 (530)
+.+. ....++..++.++.-. +..+...|+..+..++.... ..++...-+|.+..++.|..-.||...-.|+..+
T Consensus 324 lNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~L 403 (550)
T KOG4224|consen 324 LNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQL 403 (550)
T ss_pred CcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHH
Confidence 2221 1134555666776554 45699999999999886433 2234455788899999999999999988888887
Q ss_pred HHHh--ChhHHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhc
Q 009632 464 AEEF--GPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVM 506 (530)
Q Consensus 464 ~~~~--~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~ 506 (530)
.-.- ...+....++|.++.+..+.+.+||-++..++.++....
T Consensus 404 al~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v 448 (550)
T KOG4224|consen 404 ALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDV 448 (550)
T ss_pred HhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhh
Confidence 6432 222334668999999999999999999999999987654
No 44
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=2.1e-09 Score=107.92 Aligned_cols=484 Identities=15% Similarity=0.095 Sum_probs=256.9
Q ss_pred cHHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhcccccccc-cc-CCchHHHHHHHHHHhccccc-CCCccchhc
Q 009632 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NN-DDDDEVLLAMAEELGVFIPY-VGGVEHAHV 86 (530)
Q Consensus 10 ~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~-d~~~~vr~~~~~~l~~~~~~-~~~~~~~~~ 86 (530)
.+..|++.+++.|...|+.|.++++.+...++++ ...+.+.-+.+ .+ -+++...-.++-+|+.++.- +--+.....
T Consensus 342 vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~-Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l~d 420 (1133)
T KOG1943|consen 342 VIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPE-LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLLED 420 (1133)
T ss_pred HHHHHHHhccCCcchhhHHHHHHHHHHHccCcHH-HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 4678889999999999999999999988776532 22232222222 11 12344555666666666541 001222345
Q ss_pred chhHHHhhhc--------ccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHH----hcCCccchhHHHHhHhhhhcC
Q 009632 87 LLPPLETLCT--------VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRL----AAGEWFTARVSACGLFHIAYP 154 (530)
Q Consensus 87 l~~~l~~l~~--------d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l----~~~~~~~~r~~~~~~l~~l~~ 154 (530)
++|++...+. .....||++|+..+=.++....+.++.+++-.+...+ .=|.....|.+|..++-+...
T Consensus 421 VvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VG 500 (1133)
T KOG1943|consen 421 VVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVG 500 (1133)
T ss_pred HHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhc
Confidence 5555554332 2234577777777777766666655555322222222 234444455544444433332
Q ss_pred CCChH-HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHh----hcCCchhHHHHHHHHHHHH
Q 009632 155 SAPDI-LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDL----TQDDQDSVRLLAVEGCAAL 229 (530)
Q Consensus 155 ~~~~~-~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~----~~d~~~~vr~~a~~~l~~l 229 (530)
..+.- .--+ +....+.-+-.-|..+...+......++ .+.-|.+..+ +.+-+..+|..+..+|..+
T Consensus 501 R~~n~p~Gi~----Lis~~dy~sV~~rsNcy~~l~~~ia~~~-----~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~L 571 (1133)
T KOG1943|consen 501 RQGNFPHGIS----LISTIDYFSVTNRSNCYLDLCVSIAEFS-----GYREPVFNHLLTKKVCHWDVKIRELAAYALHKL 571 (1133)
T ss_pred cCCCCCCchh----hhhhcchhhhhhhhhHHHHHhHHHHhhh-----hHHHHHHHHHHhcccccccHHHHHHHHHHHHHH
Confidence 21110 0000 0011111122223333333333222211 1222333333 5567889999999999998
Q ss_pred hhhcCchhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcc--c----------cc-chHHHHHHhcCCC-cHH
Q 009632 230 GKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--T----------RM-DLVPAYVRLLRDN-EAE 295 (530)
Q Consensus 230 ~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~----------~~-~l~~~l~~~l~d~-~~~ 295 (530)
+...++. ..++.+|.+.......+...|.....+.+.+...+..-. + .. .+.|.+...+.-. ..-
T Consensus 572 s~~~pk~-~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~l 650 (1133)
T KOG1943|consen 572 SLTEPKY-LADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTL 650 (1133)
T ss_pred HHhhHHh-hcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHH
Confidence 7765543 455666666666666677788777777666654432111 0 00 1122222222111 123
Q ss_pred HHHHHHHHHHHHHHhhC---HHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccC--HHHHHHhHHHHHHHhhc-C
Q 009632 296 VRIAAAGKVTKFCRILN---PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG--KDATIEQLLPIFLSLLK-D 369 (530)
Q Consensus 296 vr~~a~~~l~~~~~~~~---~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~-d 369 (530)
.|.+..+.+..+...-. .+.+.+..-..+.+...+++ .+|.++...++.++...- .+.....+....+..+. .
T Consensus 651 mr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~ 729 (1133)
T KOG1943|consen 651 MRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKC 729 (1133)
T ss_pred HHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCc
Confidence 34444444444332211 12233333344444455666 899999999988875431 12122233333344444 4
Q ss_pred CChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCC-ChHHHHHHHHHHHHHHhhhChhhH---HHHHHHHHHHHh
Q 009632 370 EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGVGFF---DDKLGALCMQWL 445 (530)
Q Consensus 370 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~-~~~~R~~~~~~l~~l~~~~~~~~~---~~~~~~~l~~~l 445 (530)
.+..+|.....+++.+...+-.-...+.+...+....... ...-|+..+.++..+.+..+...+ .+++...+++.+
T Consensus 730 ~~~~~r~g~~lal~~lp~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~l 809 (1133)
T KOG1943|consen 730 SEERIRRGLILALGVLPSELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNAL 809 (1133)
T ss_pred hHHHHHHHHHHHHccCcHHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 4677888888888777643322233344555444443333 567899999999998888773222 244555666665
Q ss_pred cC--------CcHHHHHHHHHHHHHHHHHhC-hhHHhhhh----HHHHHhhccCCChHHHHHHHHHHHHHhhh
Q 009632 446 QD--------KVYSIRDAAANNLKRLAEEFG-PEWAMQHI----TPQVLEMINNPHYLYRMTILRAISLLAPV 505 (530)
Q Consensus 446 ~d--------~~~~Vr~~a~~~l~~l~~~~~-~~~~~~~i----~~~l~~~~~d~~~~vr~~a~~~l~~i~~~ 505 (530)
.| --..||++|.+++..+..... ++...++. +-.+.+-.-++-...|+.|+.++.++...
T Consensus 810 ddYttd~rGDVGswVReaAm~al~~~~~~l~~p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~qi~~~ 882 (1133)
T KOG1943|consen 810 DDYTTDSRGDVGSWVREAAMKALSSLLDTLSSPKLLDEDSINRIIRYFVQQAVEKIDRLRELAASALNQIVVH 882 (1133)
T ss_pred hhcccccCccHHHHHHHHHHHHHHhhhhhhcCcccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhceeec
Confidence 43 224799999999999887764 33333333 33333434466667799999999988765
No 45
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=5e-10 Score=108.45 Aligned_cols=330 Identities=17% Similarity=0.137 Sum_probs=203.2
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhh
Q 009632 161 KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240 (530)
Q Consensus 161 ~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 240 (530)
...++|.+.+.....+.+||+-+.-.|-.+++.-++....+ +..+.+.++|+|+.+|..|+..+..+--. .+.+
T Consensus 69 vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLS--IntfQk~L~DpN~LiRasALRvlSsIRvp----~IaP 142 (968)
T KOG1060|consen 69 VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLS--INTFQKALKDPNQLIRASALRVLSSIRVP----MIAP 142 (968)
T ss_pred HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeee--HHHHHhhhcCCcHHHHHHHHHHHHhcchh----hHHH
Confidence 34556666666667788888888777777777554433222 46677778888888888888877765311 1223
Q ss_pred ccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHh----hC----
Q 009632 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI----LN---- 312 (530)
Q Consensus 241 ~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~----~~---- 312 (530)
.++-.+.+...|.++.||+.++.+|.++...-. +. ...+...+..++.|.+|-|-.+|+-++..+|.. ++
T Consensus 143 I~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~-e~-k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHknyr 220 (968)
T KOG1060|consen 143 IMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDP-EQ-KDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKNYR 220 (968)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCCh-hh-HHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHHHH
Confidence 344445566778888888888888877765422 22 236777777788888888877777777666531 00
Q ss_pred --------HHHH-----H-----------------------------------------------hhhhHhHhHhccCCc
Q 009632 313 --------PELA-----I-----------------------------------------------QHILPCVKELSSDSS 332 (530)
Q Consensus 313 --------~~~~-----~-----------------------------------------------~~l~~~l~~~~~d~~ 332 (530)
-+.| . ..++....-++.+.+
T Consensus 221 klC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n 300 (968)
T KOG1060|consen 221 KLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRN 300 (968)
T ss_pred HHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCC
Confidence 0011 0 111222222333445
Q ss_pred HHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhc----------------------
Q 009632 333 QHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---------------------- 390 (530)
Q Consensus 333 ~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---------------------- 390 (530)
+.|-.++++.+..++... -...+...+.++|.. +..++...+.++..++..-.
T Consensus 301 ~sVVmA~aql~y~lAP~~----~~~~i~kaLvrLLrs-~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~ 375 (968)
T KOG1060|consen 301 PSVVMAVAQLFYHLAPKN----QVTKIAKALVRLLRS-NREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKI 375 (968)
T ss_pred cHHHHHHHhHHHhhCCHH----HHHHHHHHHHHHHhc-CCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHH
Confidence 556666666666655432 233445555555543 34566666666655543210
Q ss_pred ----------hhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q 009632 391 ----------IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNL 460 (530)
Q Consensus 391 ----------~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l 460 (530)
.+.-...|++-+..+.++.+.++-.++++++|.+++..+. +.+..+..+..++...+.-|-..++..+
T Consensus 376 lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~s--v~~tCL~gLv~Llsshde~Vv~eaV~vI 453 (968)
T KOG1060|consen 376 LKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGS--VTDTCLNGLVQLLSSHDELVVAEAVVVI 453 (968)
T ss_pred HHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCc--hhhHHHHHHHHHHhcccchhHHHHHHHH
Confidence 0111245677777778888777888888999888876653 3556777788888888888888888888
Q ss_pred HHHHHHhChhHHhhhhHHHHHhhccCC-ChHHHHHHHHHHHHHhhhcC
Q 009632 461 KRLAEEFGPEWAMQHITPQVLEMINNP-HYLYRMTILRAISLLAPVMG 507 (530)
Q Consensus 461 ~~l~~~~~~~~~~~~i~~~l~~~~~d~-~~~vr~~a~~~l~~i~~~~~ 507 (530)
..+.+.-..+ ..+++..|.+++..- -..-|...+|.+|..++.++
T Consensus 454 k~Llq~~p~~--h~~ii~~La~lldti~vp~ARA~IiWLige~~e~vp 499 (968)
T KOG1060|consen 454 KRLLQKDPAE--HLEILFQLARLLDTILVPAARAGIIWLIGEYCEIVP 499 (968)
T ss_pred HHHHhhChHH--HHHHHHHHHHHhhhhhhhhhhceeeeeehhhhhhcc
Confidence 8887764322 234666666666432 33457777787777776543
No 46
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.41 E-value=2.1e-10 Score=108.85 Aligned_cols=392 Identities=19% Similarity=0.151 Sum_probs=235.3
Q ss_pred ccCCchHHHHHHHHHHhcc-cccCCCccchhcchhHHHhhh-cccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHH
Q 009632 56 NNDDDDEVLLAMAEELGVF-IPYVGGVEHAHVLLPPLETLC-TVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRL 133 (530)
Q Consensus 56 ~~d~~~~vr~~~~~~l~~~-~~~~~~~~~~~~l~~~l~~l~-~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l 133 (530)
..|.++++|...+..++.+ +..-+ .....+.......+ ...+..|-....+.+-.++....+......+.--....
T Consensus 88 ~fDs~~s~~~K~~~l~~~l~~~~~~--~s~d~I~~~~~~~lr~e~~~~vLa~~~~~l~~~g~~~~~~~~~i~l~~~~a~~ 165 (823)
T KOG2259|consen 88 IFDSDESSRKKLAILLGILEADFEN--GSTDAISDYASLELRAECSDHVLAQYLDNLLAIGCPVCEEDIYILLLHGVAKV 165 (823)
T ss_pred hccccchhhhHHHHHhhHhhhhhcc--CchhHHHHHHHHhhcccchhHHHHHHHHHHHHhccCCCchhhHHHHHhhhHHH
Confidence 5677778887777777766 33222 12223332222222 22244444444445544444433322222111111111
Q ss_pred -hcCCccchhHHHHhHhhhhcCCCC--hHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHh
Q 009632 134 -AAGEWFTARVSACGLFHIAYPSAP--DILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDL 210 (530)
Q Consensus 134 -~~~~~~~~r~~~~~~l~~l~~~~~--~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~ 210 (530)
..+.+...|..+......+....+ +...+.+...+..+++|.+++||..|+++|-.+.+.+ .....++....+.
T Consensus 166 ~~~~~s~~~~~~~~~~~~~lg~~~ss~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~---kL~~~~Y~~A~~~ 242 (823)
T KOG2259|consen 166 RSSISSTGNRLLLYCFHLPLGVSPSSLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEGF---KLSKACYSRAVKH 242 (823)
T ss_pred hhhcccccchHHHHHHhhhcccCCCcccccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcccc---cccHHHHHHHHHH
Confidence 112233444444333333322211 1234555566888999999999999999998888733 2234577888899
Q ss_pred hcCCchhHHHHHHHHHHHHhhhcC-c-------hhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchH
Q 009632 211 TQDDQDSVRLLAVEGCAALGKLLE-P-------QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLV 282 (530)
Q Consensus 211 ~~d~~~~vr~~a~~~l~~l~~~~~-~-------~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~ 282 (530)
+.|+++.||.+|++.+..+++..+ + ....+..+..++..+.|.+|.||..+++.||.+-.... .++
T Consensus 243 lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSe------e~i 316 (823)
T KOG2259|consen 243 LSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSE------EII 316 (823)
T ss_pred hcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHH------HHH
Confidence 999999999999999999998772 1 12345577888889999999999999999998875422 121
Q ss_pred HH-HHH-hcC-CCcHHH---HHHHHHHHHHHHH------hhCHHH---HHhhhh-----HhHhHhccCCcHHHHHHHHHH
Q 009632 283 PA-YVR-LLR-DNEAEV---RIAAAGKVTKFCR------ILNPEL---AIQHIL-----PCVKELSSDSSQHVRSALASV 342 (530)
Q Consensus 283 ~~-l~~-~l~-d~~~~v---r~~a~~~l~~~~~------~~~~~~---~~~~l~-----~~l~~~~~d~~~~vr~~~~~~ 342 (530)
.. +-+ ++. +..+.. |-....+-+.+.. ..+.+. -...++ ..+...++|.-..||.++..+
T Consensus 317 ~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~S 396 (823)
T KOG2259|consen 317 QQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVAS 396 (823)
T ss_pred HHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHH
Confidence 11 111 111 000000 0011111111110 001110 011222 234555678889999999999
Q ss_pred HHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHH
Q 009632 343 IMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP 422 (530)
Q Consensus 343 l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~ 422 (530)
++.++..-+ .|....+.++..+++|+...||..|+.+|..+...+. +.+..++.+...+.|.+..+|++.-..+.
T Consensus 397 l~~La~ssP--~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~---i~eeql~~il~~L~D~s~dvRe~l~elL~ 471 (823)
T KOG2259|consen 397 LCSLATSSP--GFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLA---IREEQLRQILESLEDRSVDVREALRELLK 471 (823)
T ss_pred HHHHHcCCC--CcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe---ecHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999986443 3556677889999999999999999999999987744 34678888889999999999999887776
Q ss_pred HHHhhhChhhHH---HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCh
Q 009632 423 LLASQLGVGFFD---DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP 469 (530)
Q Consensus 423 ~l~~~~~~~~~~---~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~ 469 (530)
. ++..+.+.+. ..++..+..+=+| |.....|++.|.++.+.
T Consensus 472 ~-~~~~d~~~i~m~v~~lL~~L~kyPqD-----rd~i~~cm~~iGqnH~~ 515 (823)
T KOG2259|consen 472 N-ARVSDLECIDMCVAHLLKNLGKYPQD-----RDEILRCMGRIGQNHRR 515 (823)
T ss_pred h-cCCCcHHHHHHHHHHHHHHhhhCCCC-----cHHHHHHHHHHhccChh
Confidence 5 3333333322 2233333333334 67788999999888763
No 47
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=7.7e-10 Score=107.70 Aligned_cols=474 Identities=14% Similarity=0.138 Sum_probs=288.9
Q ss_pred CcCcHHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhccccc-cccccCCchHHHHHHHHHHhcccccCCCccchh
Q 009632 7 PLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPF-LSENNDDDDEVLLAMAEELGVFIPYVGGVEHAH 85 (530)
Q Consensus 7 ~~~~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~-l~~~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~ 85 (530)
..-.+..+...+.+.-+..|..|++..-.- ..+| .+.. .+.|- +......+-+..+..-..+.+.++ +.++..-
T Consensus 11 ~k~ei~elks~l~s~~~~kr~~a~kkvIa~-Mt~G-~DvS-slF~dvvk~~~T~dlelKKlvyLYl~nYa~--~~P~~a~ 85 (734)
T KOG1061|consen 11 KKGEIPELKSQLNSQSKEKRKDAVKKVIAY-MTVG-KDVS-SLFPDVVKCMQTRDLELKKLVYLYLMNYAK--GKPDLAI 85 (734)
T ss_pred hhhhchHHHHHhhhhhhhhHHHHHHHHHhc-CccC-cchH-hhhHHHHhhcccCCchHHHHHHHHHHHhhc--cCchHHH
Confidence 334566777778777777888887654322 2234 2232 33333 333444557777777777888777 3334444
Q ss_pred cchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChH-HHHHH
Q 009632 86 VLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-LKTEL 164 (530)
Q Consensus 86 ~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~-~~~~l 164 (530)
..++.+..-+.|+++.+|..|+..++.+ +-+.+..++..-+....+|+++.+|..+..+...+...-.+. ....+
T Consensus 86 ~avnt~~kD~~d~np~iR~lAlrtm~~l----~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl 161 (734)
T KOG1061|consen 86 LAVNTFLKDCEDPNPLIRALALRTMGCL----RVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGL 161 (734)
T ss_pred hhhhhhhccCCCCCHHHHHHHhhceeeE----eehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccch
Confidence 5566777778899999999998877765 344555666666677888899999999988888777654443 44668
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHHHhhhcch---hhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchh-hhh
Q 009632 165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA---HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD-CVA 240 (530)
Q Consensus 165 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~ 240 (530)
.+.+..++.|++|.|=..|+.++..+.+.-+.. .....++..+.+.+..-++=-+ +..+..+....++.. -..
T Consensus 162 ~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~q---i~IL~~l~~y~p~d~~ea~ 238 (734)
T KOG1061|consen 162 VDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQ---IFILDCLAEYVPKDSREAE 238 (734)
T ss_pred hHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhH---HHHHHHHHhcCCCCchhHH
Confidence 888889999999999999999999998865431 1122333333333332221112 223344444444322 122
Q ss_pred ccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC--cccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH-----
Q 009632 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP----- 313 (530)
Q Consensus 241 ~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~----- 313 (530)
.++..+...+.+.+..|--.+.+.+......+.. +....++-|.+..++.... ++...++..+..+....+.
T Consensus 239 ~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~ 317 (734)
T KOG1061|consen 239 DICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVE 317 (734)
T ss_pred HHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhH
Confidence 3555555556666666666666666655554433 1122344455555555444 7777777776665543221
Q ss_pred ---------------------------HHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHh
Q 009632 314 ---------------------------ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSL 366 (530)
Q Consensus 314 ---------------------------~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~ 366 (530)
+...+.+++-+.....+.+...-..++++++.++-..... ...+..++.+
T Consensus 318 ~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~---~~cv~~lLel 394 (734)
T KOG1061|consen 318 IKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS---NDCVSILLEL 394 (734)
T ss_pred hHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh---hhhHHHHHHH
Confidence 0112334444555555666666667778888776554432 5677888888
Q ss_pred hcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcC-CChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHh
Q 009632 367 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL 445 (530)
Q Consensus 367 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~-~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l 445 (530)
++-....|-+.++..+..+...+.... +.+.+.+.....+ .++..|.+.++.++.-+..+.. ...++..+.+..
T Consensus 395 l~~~~~yvvqE~~vvi~dilRkyP~~~--~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~---a~elL~~f~en~ 469 (734)
T KOG1061|consen 395 LETKVDYVVQEAIVVIRDILRKYPNKY--ESVVAILCENLDSLQEPEAKAALIWILGEYAERIEN---ALELLESFLENF 469 (734)
T ss_pred HhhcccceeeehhHHHHhhhhcCCCch--hhhhhhhcccccccCChHHHHHHHHHHhhhhhccCc---HHHHHHHHHhhc
Confidence 886666666666666666665554321 4566665444333 3577999999999998877665 345777788888
Q ss_pred cCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhc-cC-CChHHHHHHHHHHHHHh
Q 009632 446 QDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI-NN-PHYLYRMTILRAISLLA 503 (530)
Q Consensus 446 ~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~-~d-~~~~vr~~a~~~l~~i~ 503 (530)
.|...+|+...+-+.-.++-..+.+ .++.+..+.... .| .+.++|..++....-+.
T Consensus 470 ~dE~~~Vql~LLta~ik~Fl~~p~~--tq~~l~~vL~~~~~d~~~~dlrDr~l~Y~RlLs 527 (734)
T KOG1061|consen 470 KDETAEVQLELLTAAIKLFLKKPTE--TQELLQGVLPLATADTDNPDLRDRGLIYWRLLS 527 (734)
T ss_pred ccchHHHHHHHHHHHHHHHhcCCcc--HHHHHHHHHhhhhccccChhhhhhHHHHHHHhh
Confidence 8999998887777655544433322 244555554443 33 35577776665544443
No 48
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.33 E-value=2.4e-10 Score=99.99 Aligned_cols=339 Identities=14% Similarity=0.113 Sum_probs=216.5
Q ss_pred HHHHHHhhcCC-CChhHHHHHHHHHHHHHhhhcc---hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc---h
Q 009632 164 LRSIYTQLCQD-DMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP---Q 236 (530)
Q Consensus 164 l~~~l~~l~~d-~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~ 236 (530)
++|.|.+++.. ...-..-.|+.+|.+++..-.. -.+....+|.|.+++.+.+..||..++.+|+.++.--+. -
T Consensus 115 vVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~ 194 (526)
T COG5064 115 VVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDY 194 (526)
T ss_pred ccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHH
Confidence 44555555532 2333455777788887764333 123345789999999999999999999999888743221 1
Q ss_pred hhhhccHHHHHHhcCCC--CHHHHHHHHHHHHHHHHHhCCcc---cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhh
Q 009632 237 DCVAHILPVIVNFSQDK--SWRVRYMVANQLYELCEAVGPEP---TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL 311 (530)
Q Consensus 237 ~~~~~~~~~l~~~~~d~--~~~vr~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~ 311 (530)
......+..+..++.+. +...-+.+-++|.+++..-.+.. ...+.+|.+.+++...+++|-..|..++..+...-
T Consensus 195 vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~ 274 (526)
T COG5064 195 VLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGP 274 (526)
T ss_pred HHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCc
Confidence 11222344444444433 23556667888999987654332 35678999999999999999999999999887532
Q ss_pred CHH---HHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHH---HHHHhHHHHHHHhhcCCChHHHHHHHHhhHHh
Q 009632 312 NPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQV 385 (530)
Q Consensus 312 ~~~---~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l 385 (530)
... .+-..+.+.+.+++.+++..+...+++.++.+...-... ...-..++.+..+|..+...+|..++.++.++
T Consensus 275 ~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNI 354 (526)
T COG5064 275 NEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNI 354 (526)
T ss_pred HHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeeccc
Confidence 211 122345667788888999899999999998876432211 11234567788889999899999999999988
Q ss_pred hhhhchh---HHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhC--hhh----HHHHHHHHHHHHhcCCcHHHHHHH
Q 009632 386 NQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--VGF----FDDKLGALCMQWLQDKVYSIRDAA 456 (530)
Q Consensus 386 ~~~~~~~---~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~--~~~----~~~~~~~~l~~~l~d~~~~Vr~~a 456 (530)
...-... .+...++|.|..+++..++.+|..||++++......- ++. +.+-++..+-.+|.-.+..+-+.+
T Consensus 355 TAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~ 434 (526)
T COG5064 355 TAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVA 434 (526)
T ss_pred ccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhh
Confidence 6432211 1235789999999999999999999999998765432 111 112233344445543222244444
Q ss_pred HHHHHHHHHHhChhH--------------H-hhhhHHHHHhhccCCChHHHHHHHHHHHHHh
Q 009632 457 ANNLKRLAEEFGPEW--------------A-MQHITPQVLEMINNPHYLYRMTILRAISLLA 503 (530)
Q Consensus 457 ~~~l~~l~~~~~~~~--------------~-~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~ 503 (530)
+.++..+.+. |+.+ + ....+..+..+.+..|..+-..|...+..+.
T Consensus 435 LD~~eniLk~-Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fF 495 (526)
T COG5064 435 LDAIENILKV-GEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFF 495 (526)
T ss_pred HHHHHHHHhh-hhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHHc
Confidence 5555555443 2211 0 1234556666666667777777776666543
No 49
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.31 E-value=1e-07 Score=99.31 Aligned_cols=453 Identities=16% Similarity=0.128 Sum_probs=258.3
Q ss_pred HHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhcccccccc-ccCCchHHHHHHHHHHhcccccCCCccchhcchh
Q 009632 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLP 89 (530)
Q Consensus 11 ~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~ 89 (530)
+..++-.+..+-...|..|+++|..+++.-+.--..++....+.. .+|....||.+|...+|+++-. .++.......
T Consensus 818 Lk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~--~~e~~~qyY~ 895 (1692)
T KOG1020|consen 818 LKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLS--IPELIFQYYD 895 (1692)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhc--cHHHHHHHHH
Confidence 345667788899999999999999997753322234444455555 7899999999999999988763 3456666667
Q ss_pred HHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChH----------
Q 009632 90 PLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI---------- 159 (530)
Q Consensus 90 ~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~---------- 159 (530)
.+.+-..|+...||+.+++.+..++...+.=.....+...+..-.+|+...++..++..+..+|..-.+.
T Consensus 896 ~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~~~d~~~~~~k 975 (1692)
T KOG1020|consen 896 QIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPEVNDQPAKARK 975 (1692)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCCcccccHHHHHh
Confidence 7777788999999999999999999876641111112222222234444445555555555544211000
Q ss_pred -----------------HHHHHH----------------------------HHHHhh------------cCCCChhHHHH
Q 009632 160 -----------------LKTELR----------------------------SIYTQL------------CQDDMPMVRRS 182 (530)
Q Consensus 160 -----------------~~~~l~----------------------------~~l~~l------------~~d~~~~vR~~ 182 (530)
..++++ .++.++ ..+.+.++|..
T Consensus 976 I~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~~~~~~~~v~~~~v~~~~~L~~~cl~~~i~ev~~~~~~~~~~~~~~~ 1055 (1692)
T KOG1020|consen 976 ISLEVDVVMSQVDLMNDWLEQLLDHILKFYLLKTMKESVKPVALAKVTHVLNLLTHCLVEKISEVESDDMNEEESEVRLL 1055 (1692)
T ss_pred hHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhhhhhhhhHHHHhhcchHHHHHHHHHHHHHHhhhhHhhhcccchhHHH
Confidence 000111 111000 00122233332
Q ss_pred HH-HHHHHHHhhhcc---hhhHHHHHHHHHHhhcC-CchhHHHHHHHHHHHHhhhcCc--hhhhhccHHHHHHhcCCCCH
Q 009632 183 AA-SNLGKFAATVEP---AHLKTDIMSIFEDLTQD-DQDSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSW 255 (530)
Q Consensus 183 a~-~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d-~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~~~d~~~ 255 (530)
++ ..|..|++..+. ..+..-+.|++..-... ++..+-...+..+..+...... +.+...+-.-+...+-..+.
T Consensus 1056 ~~lstL~~FskirP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~i~k~g~ 1135 (1692)
T KOG1020|consen 1056 AYLSTLFVFSKIRPQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSESFLASLEEDLLKRIVKMGM 1135 (1692)
T ss_pred HHHHHHHHHHhcCchhccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhcch
Confidence 22 222222222221 12222334444333111 1222333333333333333221 22222222233333333333
Q ss_pred HHHHHHHHHHHHHHHHhCCcc-cccchHHHHHHhcC-------CC----cHHHHHHHHHHHHHHHHhhC--------H--
Q 009632 256 RVRYMVANQLYELCEAVGPEP-TRMDLVPAYVRLLR-------DN----EAEVRIAAAGKVTKFCRILN--------P-- 313 (530)
Q Consensus 256 ~vr~~~~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~-------d~----~~~vr~~a~~~l~~~~~~~~--------~-- 313 (530)
..-..+..|++.++....... ....++..+...+. ++ ....-.-.+.++|.++..+. +
T Consensus 1136 a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~ 1215 (1692)
T KOG1020|consen 1136 ATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSNDGKTF 1215 (1692)
T ss_pred HHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHhccCCCccCCCccc
Confidence 344445556666665433222 12233333333331 22 11122334566777777542 1
Q ss_pred ----HHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHH--HHHHHHhhHHhhh
Q 009632 314 ----ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDV--RLNIISKLDQVNQ 387 (530)
Q Consensus 314 ----~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~v--r~~a~~~l~~l~~ 387 (530)
....+.++-.+.-+.++.+..+|..++..++.++-.-+.-.+...+...+...|.|.+... +..++.++..+..
T Consensus 1216 ~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp~l~~~~~v~nly~~ila~~n~~~~~ki~~l~n~~~yL~ 1295 (1692)
T KOG1020|consen 1216 LQEGETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQHPSLFTSREVLNLYDEILADDNSDIKSKIQLLQNLELYLL 1295 (1692)
T ss_pred hhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH
Confidence 1345666777777778888999999999999998777666667778888888887764432 4555555544432
Q ss_pred h------------------------------hch----hHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhH
Q 009632 388 V------------------------------IGI----DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF 433 (530)
Q Consensus 388 ~------------------------------~~~----~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~ 433 (530)
. .|. ..+.+.+++.+.+.+-+.+-++|..|+..+..+...-=..
T Consensus 1296 eee~~l~~~~~~w~~~~k~edlkem~~v~sg~~s~~~~~~i~Qlfl~~ILe~cl~~d~~~r~~aikvl~liL~QGLVh-- 1373 (1692)
T KOG1020|consen 1296 EEEKKLRNKGKNWTKSNKSEDLKEMLDVSSGMGSSDGVSAIMQLFLDNILESCLDRDLQVRLVAIKVLKLILNQGLVH-- 1373 (1692)
T ss_pred HHHHHHHhcccchhhhhhHHHHHhhcccccccccccchHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHccCCC--
Confidence 1 011 1245778888888889999999999999998776531111
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh
Q 009632 434 DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF 467 (530)
Q Consensus 434 ~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~ 467 (530)
..+.+|++..+-.|+....|..|-..+..|-+.+
T Consensus 1374 P~~cvPtLIAL~Tdp~~~~r~~Ad~LL~eid~kY 1407 (1692)
T KOG1020|consen 1374 PVHCVPTLIALETDPSQAIRHVADELLKEIDEKY 1407 (1692)
T ss_pred ccchhhhheeecCChHHHHHHHHHHHHHHHHHhh
Confidence 1347899999999999999999999999887665
No 50
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=99.31 E-value=2.2e-09 Score=101.87 Aligned_cols=277 Identities=22% Similarity=0.273 Sum_probs=195.4
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhcc
Q 009632 163 ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHI 242 (530)
Q Consensus 163 ~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 242 (530)
...+.+.+.+.|+++.+|..+...++.+.. ...+|.+.+++.|.++.||..|+.+++.+.. +..
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~--------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--------~~a 106 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS--------EEAVPLLRELLSDEDPRVRDAAADALGELGD--------PEA 106 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch--------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC--------hhH
Confidence 345667778888899999999988776553 5678899999999999999999997776542 224
Q ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCc------------HHHHHHHHHHHHHHHH
Q 009632 243 LPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNE------------AEVRIAAAGKVTKFCR 309 (530)
Q Consensus 243 ~~~l~~~~~-d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~------------~~vr~~a~~~l~~~~~ 309 (530)
.|.+...++ |.++.||..++.+|+.+... .-+..++..+.|+. ..+|..+..+++.+..
T Consensus 107 ~~~li~~l~~d~~~~vR~~aa~aL~~~~~~--------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~ 178 (335)
T COG1413 107 VPPLVELLENDENEGVRAAAARALGKLGDE--------RALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGD 178 (335)
T ss_pred HHHHHHHHHcCCcHhHHHHHHHHHHhcCch--------hhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC
Confidence 455555555 78999999999999887642 22444555565544 3578888877777754
Q ss_pred hhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhh
Q 009632 310 ILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI 389 (530)
Q Consensus 310 ~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 389 (530)
+...+.+...+.+....+|..++..++.+.... ..+.+.+...+.|+++.+|..++..++.+..
T Consensus 179 --------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~-- 242 (335)
T COG1413 179 --------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN------VEAADLLVKALSDESLEVRKAALLALGEIGD-- 242 (335)
T ss_pred --------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCc--
Confidence 345666777778888899999998888875432 3566778888899999999999988887643
Q ss_pred chhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCh
Q 009632 390 GIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP 469 (530)
Q Consensus 390 ~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~ 469 (530)
+...+.+...+.+.++.++..+....+.. + ...-.+.+...+.|....+|..+...++.+....
T Consensus 243 ------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~----~----~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~-- 306 (335)
T COG1413 243 ------EEAVDALAKALEDEDVILALLAAAALGAL----D----LAEAALPLLLLLIDEANAVRLEAALALGQIGQEK-- 306 (335)
T ss_pred ------chhHHHHHHHHhccchHHHHHHHHHhccc----C----chhhHHHHHHHhhcchhhHHHHHHHHHHhhcccc--
Confidence 34556666777888887777766665511 1 1123455666777888889999998888765432
Q ss_pred hHHhhhhHHHHHhhccCCChHHHHHHHHHHHH
Q 009632 470 EWAMQHITPQVLEMINNPHYLYRMTILRAISL 501 (530)
Q Consensus 470 ~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~ 501 (530)
..........+.+..+|..+......
T Consensus 307 ------~~~a~~~~~~~~~~~~~~~~~~~~~~ 332 (335)
T COG1413 307 ------AVAALLLALEDGDADVRKAALILLEG 332 (335)
T ss_pred ------hHHHHHHHhcCCchhhHHHHHHHHHh
Confidence 23344445667777777776665543
No 51
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.27 E-value=2.5e-10 Score=99.98 Aligned_cols=339 Identities=13% Similarity=0.086 Sum_probs=224.0
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHHHHhhhcc----hhhHHHHHHHHHHhhc-CCchhHHHHHHHHHHHHhhhcCchh---
Q 009632 166 SIYTQLCQDDMPMVRRSAASNLGKFAATVEP----AHLKTDIMSIFEDLTQ-DDQDSVRLLAVEGCAALGKLLEPQD--- 237 (530)
Q Consensus 166 ~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~~~~~--- 237 (530)
|.+.+-+.+.+-+-...+..-+..+...-.. ......++|.|.+++. ...+-.+-.|..++..++...+...
T Consensus 74 p~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvV 153 (526)
T COG5064 74 PQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVV 153 (526)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEE
Confidence 3333333334444444444444444432221 1223457899999994 4445567788899999987765532
Q ss_pred hhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC---CcccccchHHHHHHhcCCCcH--HHHHHHHHHHHHHHHhhC
Q 009632 238 CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLLRDNEA--EVRIAAAGKVTKFCRILN 312 (530)
Q Consensus 238 ~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~--~vr~~a~~~l~~~~~~~~ 312 (530)
.....+|.+.+++.+.+..||..+.++||+++--.. +-......+..++.++..+.+ ..-..+-..|..++..-.
T Consensus 154 vd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGkn 233 (526)
T COG5064 154 VDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKN 233 (526)
T ss_pred EeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCC
Confidence 234578999999999999999999999999873211 111122345556666665544 455678888999987554
Q ss_pred HH---HHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHH---HHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhh
Q 009632 313 PE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN 386 (530)
Q Consensus 313 ~~---~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 386 (530)
+. ......+|.+.+++...++.+-.-++.+++.+...-... .....+.+-+..+|..++..+..-++...+++.
T Consensus 234 P~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIV 313 (526)
T COG5064 234 PPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIV 313 (526)
T ss_pred CCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCee
Confidence 32 334677899999999999999999999988886532211 122344566888899999999988988888876
Q ss_pred hhhchh---HHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChh---hHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q 009632 387 QVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLQDKVYSIRDAAANNL 460 (530)
Q Consensus 387 ~~~~~~---~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~---~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l 460 (530)
..-... .+.-..++.+..+++++...+|..+|+.++.+...-... .....++|.+.+++...+..+|+.||.++
T Consensus 314 TG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAi 393 (526)
T COG5064 314 TGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAI 393 (526)
T ss_pred ecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 432211 112346777888889998899999999999885432211 13356899999999999999999999998
Q ss_pred HHHHHHh-ChhH-----HhhhhHHHHHhhccCCChHHHHHHHHHHHHHhh
Q 009632 461 KRLAEEF-GPEW-----AMQHITPQVLEMINNPHYLYRMTILRAISLLAP 504 (530)
Q Consensus 461 ~~l~~~~-~~~~-----~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~ 504 (530)
....... +.+. ..+-++..|.+++.-.+..+-+.++.++.++.+
T Consensus 394 sNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk 443 (526)
T COG5064 394 SNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILK 443 (526)
T ss_pred HhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHh
Confidence 8765432 1111 113445556666655555555666777776654
No 52
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=5.2e-08 Score=95.26 Aligned_cols=427 Identities=14% Similarity=0.119 Sum_probs=238.2
Q ss_pred ccCCchHHHHHHHHHHhcccccCCCccchhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhc
Q 009632 56 NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAA 135 (530)
Q Consensus 56 ~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~ 135 (530)
++.++.-+...|--++|++ ++++....+.|-+.++++..++.||+.|+.|.-++....+. ..+.+.+....++.
T Consensus 116 L~s~nq~vVglAL~alg~i----~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~--l~e~f~~~~~~lL~ 189 (866)
T KOG1062|consen 116 LNSSNQYVVGLALCALGNI----CSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPD--LVEHFVIAFRKLLC 189 (866)
T ss_pred ccCCCeeehHHHHHHhhcc----CCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCch--HHHHhhHHHHHHHh
Confidence 5556655555555555655 33778888999999999999999999999999999887653 44556667777777
Q ss_pred CCccchhHHHHhHhhhhcCCCChH--HH----HHHHHHHHhhcCC-----------CChhHHHHHHHHHHHHHhhhcchh
Q 009632 136 GEWFTARVSACGLFHIAYPSAPDI--LK----TELRSIYTQLCQD-----------DMPMVRRSAASNLGKFAATVEPAH 198 (530)
Q Consensus 136 ~~~~~~r~~~~~~l~~l~~~~~~~--~~----~~l~~~l~~l~~d-----------~~~~vR~~a~~~l~~l~~~~~~~~ 198 (530)
+.+..|-..+..++..+++..++. +. ..++..+.++... ++|-.+-..+..|.-+...-.+
T Consensus 190 ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~d-- 267 (866)
T KOG1062|consen 190 EKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDAD-- 267 (866)
T ss_pred hcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCcc--
Confidence 888888888888887777765442 22 3334444444331 2455566666666555543221
Q ss_pred hHHHHHHHHHHhhcCC--chhHH-HHHHHHHHHHhhhcCchhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCc
Q 009632 199 LKTDIMSIFEDLTQDD--QDSVR-LLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE 275 (530)
Q Consensus 199 ~~~~l~~~l~~~~~d~--~~~vr-~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~ 275 (530)
..+.+-+.+-+..... +..+- ..-.++...+....+.......-+.++-+++.+++-..|..+...|......-...
T Consensus 268 aSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~a 347 (866)
T KOG1062|consen 268 ASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTA 347 (866)
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHH
Confidence 1122222233332211 11111 11122233333333333333333444444444444555555555555544321110
Q ss_pred ccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHH
Q 009632 276 PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDAT 355 (530)
Q Consensus 276 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~ 355 (530)
.+.=-..++.+++|+++.+|..|++.+-.+...-.-..+.+.++.++ ...+...|..++..+..+++.+.++..
T Consensus 348 --vqrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~mv~eLl~fL----~~~d~~~k~~~as~I~~laEkfaP~k~ 421 (866)
T KOG1062|consen 348 --VQRHRSTILECLKDPDVSIKRRALELSYALVNESNVRVMVKELLEFL----ESSDEDFKADIASKIAELAEKFAPDKR 421 (866)
T ss_pred --HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHHHHHHHHHHH----HhccHHHHHHHHHHHHHHHHhcCCcch
Confidence 11123456788999999999999998888876544444444444444 445677888888888888887765321
Q ss_pred HHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhh-chhH--HHhhHHHHHHHH--hcCCChHHHHHHHHHHHHHHhhhCh
Q 009632 356 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI-GIDL--LSQSLLPAIVEL--AEDRHWRVRLAIIEYIPLLASQLGV 430 (530)
Q Consensus 356 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-~~~~--~~~~l~~~l~~~--~~~~~~~~R~~~~~~l~~l~~~~~~ 430 (530)
=.+..+...+...-.-|+..+..++-.++..- +... ....+...+... ..-+....-+.+.+++|.-+..+-.
T Consensus 422 --W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~ 499 (866)
T KOG1062|consen 422 --WHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLD 499 (866)
T ss_pred --hHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhc
Confidence 11233444444444455655555555554432 2111 011122222111 1112344567788888887754311
Q ss_pred --------hhHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhccCCChHHHHHHHHHHH
Q 009632 431 --------GFFDDKLGALCMQWLQD--KVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAIS 500 (530)
Q Consensus 431 --------~~~~~~~~~~l~~~l~d--~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~ 500 (530)
..-...++..+.+.+.. ....++..|+-++-.+...+... .+++-..+......-+.++|+.+.+.=.
T Consensus 500 ~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~--~~ri~~lI~~~~~s~~~elQQRa~E~~~ 577 (866)
T KOG1062|consen 500 GANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSS--SERIKQLISSYKSSLDTELQQRAVEYNA 577 (866)
T ss_pred CccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcccc--HHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 11234555555555432 33678999999998888777543 2344444445555667777877776433
No 53
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=5.3e-07 Score=90.52 Aligned_cols=148 Identities=14% Similarity=0.099 Sum_probs=107.1
Q ss_pred HHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhc--------CCChHHHHHHHHHHHHHHhhhChhh-----HHHHHHHHH
Q 009632 375 RLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE--------DRHWRVRLAIIEYIPLLASQLGVGF-----FDDKLGALC 441 (530)
Q Consensus 375 r~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~--------~~~~~~R~~~~~~l~~l~~~~~~~~-----~~~~~~~~l 441 (530)
+.+|...+-.++..-|.+.+ +.+++.+.+.+. ..+++-...|+..++.++..+.+.. +...+.+++
T Consensus 389 ~~Aa~~~l~~~~~KR~ke~l-~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hV 467 (1010)
T KOG1991|consen 389 DTAALDFLTTLVSKRGKETL-PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHV 467 (1010)
T ss_pred cHHHHHHHHHHHHhcchhhh-hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHh
Confidence 45666677777766665554 456666655544 2367888899999999998775432 334567777
Q ss_pred HHHhcCCcHHHHHHHHHHHHHHH-HHhChhHHhhhhHHHHHhhcc-CCChHHHHHHHHHHHHHhhhcCh--HHHHhhHHH
Q 009632 442 MQWLQDKVYSIRDAAANNLKRLA-EEFGPEWAMQHITPQVLEMIN-NPHYLYRMTILRAISLLAPVMGS--EITCSRLLP 517 (530)
Q Consensus 442 ~~~l~d~~~~Vr~~a~~~l~~l~-~~~~~~~~~~~i~~~l~~~~~-d~~~~vr~~a~~~l~~i~~~~~~--~~~~~~~~p 517 (530)
+..+.++.--.|..||..++.++ ..+.......+++....+++. |++..||..|+-|+..++.+... +.+.+++-|
T Consensus 468 fP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~ 547 (1010)
T KOG1991|consen 468 FPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPP 547 (1010)
T ss_pred hHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhH
Confidence 77889999999999999999998 555555445667777777666 89999999999999999887653 335666666
Q ss_pred HHHhhc
Q 009632 518 VVINAS 523 (530)
Q Consensus 518 ~l~~~l 523 (530)
.+.+++
T Consensus 548 ~mq~lL 553 (1010)
T KOG1991|consen 548 IMQELL 553 (1010)
T ss_pred HHHHHH
Confidence 666554
No 54
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=1.7e-08 Score=98.62 Aligned_cols=406 Identities=14% Similarity=0.104 Sum_probs=246.6
Q ss_pred hcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChHHHHHH
Q 009632 85 HVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTEL 164 (530)
Q Consensus 85 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l 164 (530)
..++|-+....+..+-..++..---+..-++..+... ...++.+..=++|++|..|..|.+..+.+-- +...+.+
T Consensus 48 SslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a--~~avnt~~kD~~d~np~iR~lAlrtm~~l~v---~~i~ey~ 122 (734)
T KOG1061|consen 48 SSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLA--ILAVNTFLKDCEDPNPLIRALALRTMGCLRV---DKITEYL 122 (734)
T ss_pred HhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHH--HhhhhhhhccCCCCCHHHHHHHhhceeeEee---hHHHHHH
Confidence 3333333333333446777766666666666554432 2244555555677889999988887765431 2466778
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHH
Q 009632 165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244 (530)
Q Consensus 165 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 244 (530)
...+...++|.++.||+.++-+...+...-+.-.....+++.+..++.|+++.|-..|+.++..+.+.-.........-+
T Consensus 123 ~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~ 202 (734)
T KOG1061|consen 123 CDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQ 202 (734)
T ss_pred HHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHH
Confidence 88889999999999999999999888765444445567889999999999999999999999999876543222222223
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcc-cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH--HHHHhhhh
Q 009632 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEP-TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP--ELAIQHIL 321 (530)
Q Consensus 245 ~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~--~~~~~~l~ 321 (530)
.+..++..-+...-..-+..+..++....++. -...++..+...+.+.++.|..++.+.+-........ +.+...+-
T Consensus 203 ~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~ 282 (734)
T KOG1061|consen 203 LINKLLEALNECTEWGQIFILDCLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVA 282 (734)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33333332222222223334455555555443 2235666677777888888888888888777766544 22334444
Q ss_pred HhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHH
Q 009632 322 PCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPA 401 (530)
Q Consensus 322 ~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~ 401 (530)
|-+..++.... .+...++..+..+....+. .+...+.- ++--.+|+ -.|+..=++.+..+.. +...++++.-
T Consensus 283 ~pl~tlls~~~-e~qyvaLrNi~lil~~~p~-~~~~~~~~-Ff~kynDP-iYvK~eKleil~~la~----~~nl~qvl~E 354 (734)
T KOG1061|consen 283 PPLVTLLSSES-EIQYVALRNINLILQKRPE-ILKVEIKV-FFCKYNDP-IYVKLEKLEILIELAN----DANLAQVLAE 354 (734)
T ss_pred ccceeeecccc-hhhHHHHhhHHHHHHhChH-HHHhHhHe-eeeecCCc-hhhHHHHHHHHHHHhh----HhHHHHHHHH
Confidence 44444444333 6777777776666554442 22222211 11112232 2344443343333322 1222457777
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHH
Q 009632 402 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVL 481 (530)
Q Consensus 402 l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~ 481 (530)
+..+..+-+...-..++.+++.++-..... +..++.++.++.-+..-|...++..+..+.+.+.+.. +.+++.+-
T Consensus 355 l~eYatevD~~fvrkaIraig~~aik~e~~---~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~--~~vv~~l~ 429 (734)
T KOG1061|consen 355 LKEYATEVDVDFVRKAVRAIGRLAIKAEQS---NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKY--ESVVAILC 429 (734)
T ss_pred HHHhhhhhCHHHHHHHHHHhhhhhhhhhhh---hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCch--hhhhhhhc
Confidence 777777777777778888888887665544 5677778888777777777777777777777765432 34444444
Q ss_pred hhccC-CChHHHHHHHHHHHHHhhhcCh
Q 009632 482 EMINN-PHYLYRMTILRAISLLAPVMGS 508 (530)
Q Consensus 482 ~~~~d-~~~~vr~~a~~~l~~i~~~~~~ 508 (530)
..... .+++-|.+.+|.+|..++.++.
T Consensus 430 ~~~~sl~epeak~amiWilg~y~~~i~~ 457 (734)
T KOG1061|consen 430 ENLDSLQEPEAKAALIWILGEYAERIEN 457 (734)
T ss_pred ccccccCChHHHHHHHHHHhhhhhccCc
Confidence 43332 3455666666777766666553
No 55
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.20 E-value=1.7e-09 Score=96.38 Aligned_cols=196 Identities=19% Similarity=0.135 Sum_probs=134.8
Q ss_pred hcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChHHHHHH
Q 009632 85 HVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTEL 164 (530)
Q Consensus 85 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l 164 (530)
..+...|...-++.+|..|..|+..+..++....+......+.+.+ ..+
T Consensus 6 ~~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l-------------------------------~~~ 54 (228)
T PF12348_consen 6 EEILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECL-------------------------------RQL 54 (228)
T ss_dssp GGS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHH-------------------------------H--
T ss_pred HHHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHH-------------------------------HHh
Confidence 3444555555567889999999999999887652211111122222 224
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHHHhhhcch--hhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhcc
Q 009632 165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHI 242 (530)
Q Consensus 165 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 242 (530)
+..+...+.|....|-+.|+..+..++..++.. .+.+.++|.+.+.+.|....+|..|..++..+.+.++. ...+
T Consensus 55 ~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~---~~~~ 131 (228)
T PF12348_consen 55 LDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSY---SPKI 131 (228)
T ss_dssp -HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H-----HH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCc---HHHH
Confidence 456667777888889999999999999998874 45677999999999999999999999999999998871 1224
Q ss_pred -HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC---Cccc----ccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH
Q 009632 243 -LPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPT----RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE 314 (530)
Q Consensus 243 -~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~---~~~~----~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~ 314 (530)
.+.+....+++++.+|..++..+..+....+ .... .+.+.+.+..++.|.+++||.+|-.++..+...+|..
T Consensus 132 ~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 132 LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence 7888889999999999999999999988877 1111 2568899999999999999999999999998887765
No 56
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.19 E-value=2.4e-08 Score=95.22 Aligned_cols=213 Identities=16% Similarity=0.179 Sum_probs=147.2
Q ss_pred chHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccC-H------
Q 009632 280 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG-K------ 352 (530)
Q Consensus 280 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~-~------ 352 (530)
.++..+..+..|.++.||.+|++++-.+.+.+.- .+.+.....+.+.|.+..||.++++.+..+++.++ +
T Consensus 198 ~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL---~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~ 274 (823)
T KOG2259|consen 198 HAARGLIYLEHDQDFRVRTHAVEGLLALSEGFKL---SKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESE 274 (823)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHhhcccccc---cHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhh
Confidence 4555566777788888888888887777763322 24455566667778888888888877777766551 1
Q ss_pred -HHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHH----hh------------------------------
Q 009632 353 -DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS----QS------------------------------ 397 (530)
Q Consensus 353 -~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~----~~------------------------------ 397 (530)
....+..+.-+...+.|.+..||..|.+++|.+...-. +.+. ++
T Consensus 275 e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSe-e~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~ 353 (823)
T KOG2259|consen 275 EEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSE-EIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEW 353 (823)
T ss_pred hhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHH-HHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccc
Confidence 12344455556677788888888888888877754321 1111 11
Q ss_pred ---------------HHH-----HHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHH
Q 009632 398 ---------------LLP-----AIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAA 457 (530)
Q Consensus 398 ---------------l~~-----~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~ 457 (530)
++| .++.-+.|..+.||.+|+..+..++.. ...|...-+.++...++|....||..|+
T Consensus 354 ~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~s--sP~FA~~aldfLvDMfNDE~~~VRL~ai 431 (823)
T KOG2259|consen 354 NADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATS--SPGFAVRALDFLVDMFNDEIEVVRLKAI 431 (823)
T ss_pred cccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcC--CCCcHHHHHHHHHHHhccHHHHHHHHHH
Confidence 111 122234555678999999999998753 3345666788888999999999999999
Q ss_pred HHHHHHHHHhChhHHhhhhHHHHHhhccCCChHHHHHHHHHHHH
Q 009632 458 NNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISL 501 (530)
Q Consensus 458 ~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~ 501 (530)
.+|..|..... ..++.++.+...+.|.+.++|++.-..++.
T Consensus 432 ~aL~~Is~~l~---i~eeql~~il~~L~D~s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 432 FALTMISVHLA---IREEQLRQILESLEDRSVDVREALRELLKN 472 (823)
T ss_pred HHHHHHHHHhe---ecHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99998887743 446788888888999999999987777664
No 57
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.18 E-value=2e-06 Score=88.29 Aligned_cols=473 Identities=17% Similarity=0.125 Sum_probs=276.3
Q ss_pred HHHHHHhhChHhhhhcccccccc---cc-CCchHHHHHHHHHHhcccccCCCccchhcchhHHHhhhcccchHHHHHHHH
Q 009632 33 LSTIARALGEERTRKELIPFLSE---NN-DDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVE 108 (530)
Q Consensus 33 l~~~~~~~~~~~~~~~l~~~l~~---~~-d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~ 108 (530)
+..+-+.+|+ .-..++.|.|.. +. +++..-+...-.++|..+..+| ++..-.++|+= +..+.....|..-+.
T Consensus 374 ~s~~fek~G~-~s~~~l~~~L~~l~~lr~~~d~~~~~~ld~~IGSAV~AmG-Pe~vL~~lpLn--l~~~s~~~~RsWLLP 449 (1176)
T KOG1248|consen 374 LSALFEKCGE-LSGPELTKTLEGLCDLRASPDFFHKLQLDQCIGSAVRAMG-PERVLTILPLN--LHAESLSFTRSWLLP 449 (1176)
T ss_pred HHHHHHHhhh-hcCHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhhC-HHHHHHHcchh--ccccccccchhHhHH
Confidence 3333344443 233455555544 11 1222334455555665555556 33333333331 133344556666566
Q ss_pred HHHHHHhhcChhhhhhhHHHHHHHHh------cCCcc---chhHHHHhHhhhhcCC--CChH---HHHHHHHHHHhhcCC
Q 009632 109 SLCRIGSQMRESDLVDWYIPLVKRLA------AGEWF---TARVSACGLFHIAYPS--APDI---LKTELRSIYTQLCQD 174 (530)
Q Consensus 109 ~l~~l~~~~~~~~~~~~l~~~l~~l~------~~~~~---~~r~~~~~~l~~l~~~--~~~~---~~~~l~~~l~~l~~d 174 (530)
.|..-...-+=..+..++.|+...+. ++... .++....++.+.+-.. .+-+ ....+-+.+...+.-
T Consensus 450 vLR~~i~~A~La~F~~~ivpla~sl~~K~~~l~~~~~~~~~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al~~ 529 (1176)
T KOG1248|consen 450 VLRDYIIGASLAFFTEYIVPLAMSLQLKAKKLKEAGSQVSLYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAALLK 529 (1176)
T ss_pred HHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHHhc
Confidence 66555444444445556666665553 12222 2233344444333221 1222 356777777766653
Q ss_pred CChhHHHHHHHHHHHHHhhhcc-----------hhhHHHHHHHHHHhhc----CC--chhHHHHHHHHHHHHhhhcCchh
Q 009632 175 DMPMVRRSAASNLGKFAATVEP-----------AHLKTDIMSIFEDLTQ----DD--QDSVRLLAVEGCAALGKLLEPQD 237 (530)
Q Consensus 175 ~~~~vR~~a~~~l~~l~~~~~~-----------~~~~~~l~~~l~~~~~----d~--~~~vr~~a~~~l~~l~~~~~~~~ 237 (530)
.++.|...|.+|..+.....+ ......++|.+.+..+ +. ....|...++.+....-...+.+
T Consensus 530 -~~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~t~~d 608 (1176)
T KOG1248|consen 530 -RPELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTVTPTD 608 (1176)
T ss_pred -chHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhcccHH
Confidence 349999999999999886421 1122335555555443 22 22344444444442222222333
Q ss_pred hhhccHHHHHHhcCCCCHHHH----HHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH
Q 009632 238 CVAHILPVIVNFSQDKSWRVR----YMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP 313 (530)
Q Consensus 238 ~~~~~~~~l~~~~~d~~~~vr----~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~ 313 (530)
....+...+..+..+.+..++ .+....+..++....... ...+..+.-..-+...+-+++.+...|..++.....
T Consensus 609 v~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~-vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~ 687 (1176)
T KOG1248|consen 609 VVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQ-VSKLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSG 687 (1176)
T ss_pred HHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchh-HHHHHHhhHHhhccccHHHHHHHHHHHHHHhcCCch
Confidence 445566666666666544333 333333333433322222 222222222222344678999999999998876222
Q ss_pred H----HHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHH--HHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhh
Q 009632 314 E----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD--ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 387 (530)
Q Consensus 314 ~----~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 387 (530)
+ .....+...+.+-.++.....|...+.++..+.+.++.+ .+....+|-++-.+++.+..-|..+...|..++.
T Consensus 688 ~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~ 767 (1176)
T KOG1248|consen 688 EGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGA 767 (1176)
T ss_pred hhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHH
Confidence 2 223444555555556666778888888888888877743 3456667777767799999999999999988883
Q ss_pred --h---hchhH---HHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhC---hhhHHHHHHHHHHHHhcCCcHHHHHHH
Q 009632 388 --V---IGIDL---LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLQDKVYSIRDAA 456 (530)
Q Consensus 388 --~---~~~~~---~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~---~~~~~~~~~~~l~~~l~d~~~~Vr~~a 456 (530)
. .|.+. ..+.+++.+...+-....+++..-+-++..+....+ ...+...++..+.-++....++++.+|
T Consensus 768 i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaA 847 (1176)
T KOG1248|consen 768 IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAA 847 (1176)
T ss_pred HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 2 23222 334555555444444455555554666666655443 344566788888889999999999999
Q ss_pred HHHHHHHHHHhChhHH---hhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcChHHH
Q 009632 457 ANNLKRLAEEFGPEWA---MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT 511 (530)
Q Consensus 457 ~~~l~~l~~~~~~~~~---~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~~~~ 511 (530)
+..+..++..+..... .+.++|.+..+..|.+..+|...-..+..++..+|.+.+
T Consensus 848 I~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eL 905 (1176)
T KOG1248|consen 848 IGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEEL 905 (1176)
T ss_pred HHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHH
Confidence 9999999988876533 367899999999998999999999999999999997654
No 58
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=99.17 E-value=2.5e-08 Score=94.62 Aligned_cols=274 Identities=23% Similarity=0.214 Sum_probs=181.5
Q ss_pred HHHHHHhcCCccchhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHH
Q 009632 128 PLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIF 207 (530)
Q Consensus 128 ~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l 207 (530)
+.+.....++++.+|..+...++.+. ....++.+..++.|.++.||..++.+++.+.. +..++.+
T Consensus 46 ~~~~~~l~~~~~~vr~~aa~~l~~~~-------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--------~~a~~~l 110 (335)
T COG1413 46 DELLKLLEDEDLLVRLSAAVALGELG-------SEEAVPLLRELLSDEDPRVRDAAADALGELGD--------PEAVPPL 110 (335)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhhhc-------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC--------hhHHHHH
Confidence 33344444445555555554433222 24456677777778888888888886666532 3344555
Q ss_pred HHhhc-CCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcCC------------CCHHHHHHHHHHHHHHHHHhCC
Q 009632 208 EDLTQ-DDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQD------------KSWRVRYMVANQLYELCEAVGP 274 (530)
Q Consensus 208 ~~~~~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d------------~~~~vr~~~~~~l~~l~~~~~~ 274 (530)
.+++. |++..||..+..+++.+...- .+..+...++| ..+.+|..+...++.+.
T Consensus 111 i~~l~~d~~~~vR~~aa~aL~~~~~~~--------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~----- 177 (335)
T COG1413 111 VELLENDENEGVRAAAARALGKLGDER--------ALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELG----- 177 (335)
T ss_pred HHHHHcCCcHhHHHHHHHHHHhcCchh--------hhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcC-----
Confidence 55555 677788888888887765432 12223333333 22468888888887775
Q ss_pred cccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHH
Q 009632 275 EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA 354 (530)
Q Consensus 275 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~ 354 (530)
.....+.+...+.++...||..+..+++.+.... ..+.+.+.....|.+|.+|..++..++.+...
T Consensus 178 ---~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~~----- 243 (335)
T COG1413 178 ---DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN------VEAADLLVKALSDESLEVRKAALLALGEIGDE----- 243 (335)
T ss_pred ---ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCcc-----
Confidence 3456788899999999999999999999987632 24567778888999999999999988776432
Q ss_pred HHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHH
Q 009632 355 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD 434 (530)
Q Consensus 355 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~ 434 (530)
...+.+...+.+.++.++..+...++..- .....+.+.....+..+.+|..+...+........
T Consensus 244 ---~~~~~l~~~l~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~----- 307 (335)
T COG1413 244 ---EAVDALAKALEDEDVILALLAAAALGALD--------LAEAALPLLLLLIDEANAVRLEAALALGQIGQEKA----- 307 (335)
T ss_pred ---hhHHHHHHHHhccchHHHHHHHHHhcccC--------chhhHHHHHHHhhcchhhHHHHHHHHHHhhcccch-----
Confidence 33456777888888888877766665211 12234445566688899999999988888764322
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 009632 435 DKLGALCMQWLQDKVYSIRDAAANNLKR 462 (530)
Q Consensus 435 ~~~~~~l~~~l~d~~~~Vr~~a~~~l~~ 462 (530)
.........+....+|..+......
T Consensus 308 ---~~a~~~~~~~~~~~~~~~~~~~~~~ 332 (335)
T COG1413 308 ---VAALLLALEDGDADVRKAALILLEG 332 (335)
T ss_pred ---HHHHHHHhcCCchhhHHHHHHHHHh
Confidence 3344555677778888877766543
No 59
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=99.16 E-value=1.8e-07 Score=88.03 Aligned_cols=450 Identities=13% Similarity=0.093 Sum_probs=256.8
Q ss_pred ccCCchHHHHHHHHHHhcccccCCCccchhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhc
Q 009632 56 NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAA 135 (530)
Q Consensus 56 ~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~ 135 (530)
.+..++..|+.+..++..+...- ++..-..-.++..+.+-.+..+|-.|++.|-.+...-.--. +..++....-
T Consensus 74 FQhkd~~Lrq~VY~aIkelS~~t--edvlm~tssiMkD~~~g~~~~~kp~AiRsL~~Vid~~tv~~----~er~l~~a~V 147 (898)
T COG5240 74 FQHKDLYLRQCVYSAIKELSKLT--EDVLMGTSSIMKDLNGGVPDDVKPMAIRSLFSVIDGETVYD----FERYLNQAFV 147 (898)
T ss_pred HhcCChHHHHHHHHHHHHHhhcc--hhhhHHHHHHHHhhccCCccccccHHHHHHHHhcCcchhhh----HHHHhhhhcc
Confidence 56778888888887777765532 22222222233333333455788877777776654322222 2333344444
Q ss_pred CCccchhHHHHhHhhhhcCCCChH---HHHHHHHHHHhhcC------------CCChhHHHHHHHHHHHHHhhhcchhhH
Q 009632 136 GEWFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQ------------DDMPMVRRSAASNLGKFAATVEPAHLK 200 (530)
Q Consensus 136 ~~~~~~r~~~~~~l~~l~~~~~~~---~~~~l~~~l~~l~~------------d~~~~vR~~a~~~l~~l~~~~~~~~~~ 200 (530)
+....+|.++.-.-..+.+..... ..++..+.+..+-+ ..++.-++.|+..|..+-+. +....
T Consensus 148 s~~~a~~saalv~aYhLlp~~~~~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalGlLyq~kr~--dkma~ 225 (898)
T COG5240 148 STSMARRSAALVVAYHLLPNNFNQTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHALGLLYQSKRT--DKMAQ 225 (898)
T ss_pred ccchhhhhhHHHHhhhhccccHHHHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHHHHHHHHhcc--cHHHH
Confidence 455445544332222232222111 22233333333222 22444555554444333221 01111
Q ss_pred HHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc-hhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh-CCcccc
Q 009632 201 TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP-QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV-GPEPTR 278 (530)
Q Consensus 201 ~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~-~~~~~~ 278 (530)
-.++.. +..+..-.-..+.+..+..+...+.. ..+..++.|++...++|+-..|-..+++.+..++..- +++. .
T Consensus 226 lklv~h---f~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~-~ 301 (898)
T COG5240 226 LKLVEH---FRGNASMKNQLAGVLLVRATVELLKENSQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQF-V 301 (898)
T ss_pred HHHHHH---hhcccccccchhheehHHHHHHHHHhChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHH-H
Confidence 112222 22222111222233333333333222 3456778899999999988889888998888877643 4443 3
Q ss_pred cchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHh
Q 009632 279 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQ 358 (530)
Q Consensus 279 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ 358 (530)
...+..+..+++.+....|-+|++.+.+++...+... ...-+.+..++.|.+..+-.-++..+-.. |.+...+.
T Consensus 302 ~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv--~vcN~evEsLIsd~Nr~IstyAITtLLKT----Gt~e~idr 375 (898)
T COG5240 302 DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKV--SVCNKEVESLISDENRTISTYAITTLLKT----GTEETIDR 375 (898)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCcee--eecChhHHHHhhcccccchHHHHHHHHHc----CchhhHHH
Confidence 5567777888888888899999999999987655432 23445566777888876666655554443 44556666
Q ss_pred HHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHh-cCCChHHHHHHHHHHHHHHhhhChhhHHHHH
Q 009632 359 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQLGVGFFDDKL 437 (530)
Q Consensus 359 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~-~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~ 437 (530)
++..+...+.|-+...+..+++++..++..+...+ ..++..|...+ +...+..+..++.+++.+.+..+.. .+..
T Consensus 376 Lv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~--~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~s--kEra 451 (898)
T COG5240 376 LVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKK--LSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDS--KERA 451 (898)
T ss_pred HHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHH--HHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchH--HHHH
Confidence 76777777777666677778888888888777665 35666665544 4456888888888888777654321 2334
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcChHHHHhhHHH
Q 009632 438 GALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLP 517 (530)
Q Consensus 438 ~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~p 517 (530)
+..+-.++.|... -+-++..|+.+.+...........+-.+.+.+-=+|..||.+|+.++..++-........+.+..
T Consensus 452 Le~LC~fIEDcey--~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~sv~~ 529 (898)
T COG5240 452 LEVLCTFIEDCEY--HQITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQSVEN 529 (898)
T ss_pred HHHHHHHHhhcch--hHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccHHHHHH
Confidence 5555556666443 22333344433332211111122333344434445789999999999999988777677788889
Q ss_pred HHHhhccCCCCC
Q 009632 518 VVINASKDRYLN 529 (530)
Q Consensus 518 ~l~~~l~D~~~~ 529 (530)
.|.++++|.-..
T Consensus 530 ~lkRclnD~Dde 541 (898)
T COG5240 530 ALKRCLNDQDDE 541 (898)
T ss_pred HHHHHhhcccHH
Confidence 999999987654
No 60
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=1.3e-06 Score=84.62 Aligned_cols=316 Identities=16% Similarity=0.113 Sum_probs=204.5
Q ss_pred HHHHhHhhhhcCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHH
Q 009632 143 VSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLA 222 (530)
Q Consensus 143 ~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a 222 (530)
+.+..+++.+.+..+++...++-+-++.+++.+-|-||+.|+..+..++...+.. ....+|.+.+-+.|+++.|..+|
T Consensus 124 ye~giAL~GLS~fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA--lr~~FprL~EkLeDpDp~V~SAA 201 (877)
T KOG1059|consen 124 YEVGLALSGLSCIVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA--LRPCFPRLVEKLEDPDPSVVSAA 201 (877)
T ss_pred chhhheecccccccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh--HhhhHHHHHHhccCCCchHHHHH
Confidence 3455566777777788888888888999999999999999999998887655442 34578999999999999999999
Q ss_pred HHHHHHHhhhcCchhhhhccHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHhCCccc-ccchHHHHHHhcCCCcH-HHHH
Q 009632 223 VEGCAALGKLLEPQDCVAHILPVIVNFSQ--DKSWRVRYMVANQLYELCEAVGPEPT-RMDLVPAYVRLLRDNEA-EVRI 298 (530)
Q Consensus 223 ~~~l~~l~~~~~~~~~~~~~~~~l~~~~~--d~~~~vr~~~~~~l~~l~~~~~~~~~-~~~l~~~l~~~l~d~~~-~vr~ 298 (530)
+..+..+++.-++. +. .+-|.+.+++. +.+|-. --..+.++.+... +.- -.+++|.+.++++.+.. .+-.
T Consensus 202 V~VICELArKnPkn-yL-~LAP~ffkllttSsNNWmL-IKiiKLF~aLtpl---EPRLgKKLieplt~li~sT~AmSLlY 275 (877)
T KOG1059|consen 202 VSVICELARKNPQN-YL-QLAPLFYKLLVTSSNNWVL-IKLLKLFAALTPL---EPRLGKKLIEPITELMESTVAMSLLY 275 (877)
T ss_pred HHHHHHHHhhCCcc-cc-cccHHHHHHHhccCCCeeh-HHHHHHHhhcccc---CchhhhhhhhHHHHHHHhhHHHHHHH
Confidence 99999999886653 33 37788877764 456732 2234444444322 221 24688888888887642 2222
Q ss_pred HHHHHHHHHHHhhC---HHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHH
Q 009632 299 AAAGKVTKFCRILN---PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVR 375 (530)
Q Consensus 299 ~a~~~l~~~~~~~~---~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr 375 (530)
.++.++-...-..| .....+-.+.-+..++.|.++..|.-.+-+++.+++.... +...-..+++.+|.|.++.+|
T Consensus 276 ECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~--~Vqa~kdlIlrcL~DkD~SIR 353 (877)
T KOG1059|consen 276 ECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPK--AVQAHKDLILRCLDDKDESIR 353 (877)
T ss_pred HHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHH--HHHHhHHHHHHHhccCCchhH
Confidence 22222211100112 1233455666677788999999999988888888765442 344556789999999999999
Q ss_pred HHHHHhhHHhhhhhc----------------hhHHHhhHHHHHHHHhcCCChHHHHHH---HHHHHHHHhhhChhh----
Q 009632 376 LNIISKLDQVNQVIG----------------IDLLSQSLLPAIVELAEDRHWRVRLAI---IEYIPLLASQLGVGF---- 432 (530)
Q Consensus 376 ~~a~~~l~~l~~~~~----------------~~~~~~~l~~~l~~~~~~~~~~~R~~~---~~~l~~l~~~~~~~~---- 432 (530)
..|+..+-.+...-. ...+...++..+..+++-++|..-... +..+..++...|.+.
T Consensus 354 lrALdLl~gmVskkNl~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~snY~~ItdFEWYlsVlveLa~l~~~~~G~~I 433 (877)
T KOG1059|consen 354 LRALDLLYGMVSKKNLMEIVKTLMKHVEKAEGTNYRDELLTRIISICSQSNYQYITDFEWYLSVLVELARLEGTRHGSLI 433 (877)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccccchhhHH
Confidence 999988877653211 123345566666666666655544333 333333433322111
Q ss_pred -------------HHHHHHHHHHHHhcCC-----------cHHHHHHHHHHHHHHHHHhC
Q 009632 433 -------------FDDKLGALCMQWLQDK-----------VYSIRDAAANNLKRLAEEFG 468 (530)
Q Consensus 433 -------------~~~~~~~~l~~~l~d~-----------~~~Vr~~a~~~l~~l~~~~~ 468 (530)
..+..+..+..++.|+ ...|-.+|+.++|...+...
T Consensus 434 ~eQi~Dv~iRV~~iR~fsV~~m~~Ll~~~~~~~s~q~n~~l~eVL~AaaWi~GEyse~ve 493 (877)
T KOG1059|consen 434 AEQIIDVAIRVPSIRPFSVSQMSALLDDPLLAGSAQINSQLCEVLYAAAWILGEYSEFVE 493 (877)
T ss_pred HHHHHHHheechhhhHhHHHHHHHHHhchhhccchhhccchhHHHHHHHHHHHHHHHHhh
Confidence 1122333444455544 45677788889888887664
No 61
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=1.3e-07 Score=92.34 Aligned_cols=457 Identities=12% Similarity=0.101 Sum_probs=258.7
Q ss_pred HHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhcccccccc----ccCCchHHHHHHHHHHhcccccCCCccchhcch
Q 009632 13 VLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE----NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLL 88 (530)
Q Consensus 13 ~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~----~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~ 88 (530)
.+....++.|...|+....++++++..- ++.+-..+. ....++..|..|.+.|..+.. + .....+-
T Consensus 68 ~~tKlfQskd~~LRr~vYl~Ikels~is------edviivtsslmkD~t~~~d~yr~~AiR~L~~I~d--~--~m~~~ie 137 (865)
T KOG1078|consen 68 AITKLFQSKDVSLRRMVYLAIKELSKIS------EDVIIVTSSLMKDMTGKEDLYRAAAIRALCSIID--G--TMLQAIE 137 (865)
T ss_pred HHHHHHhhcCHHHHHHHHHHHhhccccc------hhhhhhhHHHHhhccCCCcchhHHHHHHHHhhcC--c--chhHHHH
Confidence 3455567888888888777777664321 122222222 233455677777777766654 1 2233444
Q ss_pred hHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChHHHHHHHHHH
Q 009632 89 PPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIY 168 (530)
Q Consensus 89 ~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l 168 (530)
..+.+..-|+.+.++..|+-.=-.+...- .+.... ...-+.....+++.-+++++..++..+-++-.-. ...++..+
T Consensus 138 ry~kqaivd~~~avSsaalvss~hll~~~-~~~vkr-w~neiqea~~s~~~m~QyHalglLyqirk~drla-~sklv~~~ 214 (865)
T KOG1078|consen 138 RYMKQAIVDKNPAVSSAALVSSYHLLPIS-FDVVKR-WANEVQEAVNSDNIMVQYHALGLLYQIRKNDRLA-VSKLVQKF 214 (865)
T ss_pred HHHHhHeeccccccchHHHHHHhhhhccc-HHHHHH-HHHhhhhccCcHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHH
Confidence 55666667777777777643222222211 111111 1122222233333345666666665554321111 11111111
Q ss_pred Hh-hcCCCChhHHHHHHHHHHHHHhhhcc-hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHH
Q 009632 169 TQ-LCQDDMPMVRRSAASNLGKFAATVEP-AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI 246 (530)
Q Consensus 169 ~~-l~~d~~~~vR~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l 246 (530)
.. .+.++ - +-+..+...++.+.+ ......+++.+...+.+..+.|-..|..++..+....+.+ ....+..+
T Consensus 215 ~~~~~~~~--~---A~~~lir~~~~~l~~~~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~--l~pavs~L 287 (865)
T KOG1078|consen 215 TRGSLKSP--L---AVCMLIRIASELLKENQQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRE--LAPAVSVL 287 (865)
T ss_pred ccccccch--h---HHHHHHHHHHHHhhhcccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhh--cchHHHHH
Confidence 11 11111 1 111111111222211 2234567888888888888888888888887776655432 22256667
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhH
Q 009632 247 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKE 326 (530)
Q Consensus 247 ~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~ 326 (530)
..+++.+....|.++...|.+++...+..... .-.-+..++.|.+- ..+..++..+.+. |.+.-...++..+..
T Consensus 288 q~flssp~~~lRfaAvRtLnkvAm~~P~~v~~--cN~elE~lItd~Nr---sIat~AITtLLKT-G~e~sv~rLm~qI~~ 361 (865)
T KOG1078|consen 288 QLFLSSPKVALRFAAVRTLNKVAMKHPQAVTV--CNLDLESLITDSNR---SIATLAITTLLKT-GTESSVDRLMKQISS 361 (865)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHhCCccccc--cchhHHhhhccccc---chhHHHHHHHHHh-cchhHHHHHHHHHHH
Confidence 77889999999999999999999876654321 12334556677663 4444455555443 333223555666666
Q ss_pred hccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcC-CChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHH
Q 009632 327 LSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKD-EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL 405 (530)
Q Consensus 327 ~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~ 405 (530)
++.|-+..-+..+.+.+..++..++.. ...+++++.++|++ +..+-+.+.++++..++..... ..+..+..|+++
T Consensus 362 fv~disDeFKivvvdai~sLc~~fp~k--~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pd--sKe~~L~~LCef 437 (865)
T KOG1078|consen 362 FVSDISDEFKIVVVDAIRSLCLKFPRK--HTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPD--SKERGLEHLCEF 437 (865)
T ss_pred HHHhccccceEEeHHHHHHHHhhccHH--HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcc--hhhHHHHHHHHH
Confidence 666555555666666666666655533 23456667776654 4567777888887777664322 124556667777
Q ss_pred hcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhcc
Q 009632 406 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN 485 (530)
Q Consensus 406 ~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~ 485 (530)
+.|.. .+..+...++.++............+..+.+...=.+.-||.+|..++..+. .+.......+...+.++++
T Consensus 438 IEDce--~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg--~~~~~l~~sI~vllkRc~~ 513 (865)
T KOG1078|consen 438 IEDCE--FTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFG--AQDVVLLPSILVLLKRCLN 513 (865)
T ss_pred HHhcc--chHHHHHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHh--cCCCCccccHHHHHHHHhc
Confidence 66643 3455556666665543332223334444445444456778999999988887 3444445677778888899
Q ss_pred CCChHHHHHHHHHHHHHh
Q 009632 486 NPHYLYRMTILRAISLLA 503 (530)
Q Consensus 486 d~~~~vr~~a~~~l~~i~ 503 (530)
|++..||..|-.++..+-
T Consensus 514 D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 514 DSDDEVRDRATFYLKNLE 531 (865)
T ss_pred CchHHHHHHHHHHHHHhh
Confidence 999999998888888775
No 62
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.14 E-value=4.5e-09 Score=93.72 Aligned_cols=186 Identities=21% Similarity=0.260 Sum_probs=121.8
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH----HH---HhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCH--
Q 009632 282 VPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----LA---IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK-- 352 (530)
Q Consensus 282 ~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~----~~---~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~-- 352 (530)
.+.|...-.+.+|+.|..++..+..++..-... .+ ...+.+.+...+.|....+-..++..+..++..++.
T Consensus 9 ~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~ 88 (228)
T PF12348_consen 9 LAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHF 88 (228)
T ss_dssp -TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhH
Confidence 333333345566777777777666666544111 11 122334455556666667788888888888877765
Q ss_pred HHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhH-HHHHHHHhcCCChHHHHHHHHHHHHHHhhhC--
Q 009632 353 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL-LPAIVELAEDRHWRVRLAIIEYIPLLASQLG-- 429 (530)
Q Consensus 353 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l-~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~-- 429 (530)
+.+.+.++|.++..+.|....+|..|..++..++...+. ...+ .+.+....+++++.+|..++.++..+....+
T Consensus 89 ~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~---~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~ 165 (228)
T PF12348_consen 89 EPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSY---SPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSD 165 (228)
T ss_dssp HHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H-----HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCc---HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccch
Confidence 346788999999999999999999999999999987761 1234 6777778899999999999999999988887
Q ss_pred hhh-----HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh
Q 009632 430 VGF-----FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE 470 (530)
Q Consensus 430 ~~~-----~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~ 470 (530)
... ..+.+.+.+.+++.|++++||..|-.++..+.+.+|..
T Consensus 166 ~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 166 SSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp -GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred HhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence 121 23568899999999999999999999999998888755
No 63
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=99.13 E-value=2e-08 Score=95.36 Aligned_cols=241 Identities=15% Similarity=0.046 Sum_probs=153.0
Q ss_pred HHHHHHhhc-CCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhcc
Q 009632 164 LRSIYTQLC-QDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHI 242 (530)
Q Consensus 164 l~~~l~~l~-~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 242 (530)
.++.+...+ .|+++.++..++.++...-. ...+..+.+.+.|.++.||..++++|+.+. ....
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~~~~--------~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~--------~~~a 118 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLAQED--------ALDLRSVLAVLQAGPEGLCAGIQAALGWLG--------GRQA 118 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhccCC--------hHHHHHHHHHhcCCCHHHHHHHHHHHhcCC--------chHH
Confidence 344455555 46777777766655543211 223667777788888888888888887543 2335
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhH
Q 009632 243 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILP 322 (530)
Q Consensus 243 ~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~ 322 (530)
.+.+..++++.++.||..++..++... ..-.+.+...++|+++.||..|+.+++.+.. ....|
T Consensus 119 ~~~L~~~L~~~~p~vR~aal~al~~r~---------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~--------~~a~~ 181 (410)
T TIGR02270 119 EPWLEPLLAASEPPGRAIGLAALGAHR---------HDPGPALEAALTHEDALVRAAALRALGELPR--------RLSES 181 (410)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhc---------cChHHHHHHHhcCCCHHHHHHHHHHHHhhcc--------ccchH
Confidence 666777778888888887776665521 1124566777788888888888888887754 23445
Q ss_pred hHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHH
Q 009632 323 CVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAI 402 (530)
Q Consensus 323 ~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l 402 (530)
.+.....|.++.||..++..+..+.. . ..++.+.....+....++..+...+... |. +..++.|
T Consensus 182 ~L~~al~d~~~~VR~aA~~al~~lG~----~----~A~~~l~~~~~~~g~~~~~~l~~~lal~----~~----~~a~~~L 245 (410)
T TIGR02270 182 TLRLYLRDSDPEVRFAALEAGLLAGS----R----LAWGVCRRFQVLEGGPHRQRLLVLLAVA----GG----PDAQAWL 245 (410)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCC----H----hHHHHHHHHHhccCccHHHHHHHHHHhC----Cc----hhHHHHH
Confidence 55566778888888888887766532 1 1223344433444444444444444332 22 3567777
Q ss_pred HHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 009632 403 VELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAE 465 (530)
Q Consensus 403 ~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~ 465 (530)
..++++++ +|..++.+++.+.. ...++.++..+.|+. +|..|.+++..|..
T Consensus 246 ~~ll~d~~--vr~~a~~AlG~lg~--------p~av~~L~~~l~d~~--~aR~A~eA~~~ItG 296 (410)
T TIGR02270 246 RELLQAAA--TRREALRAVGLVGD--------VEAAPWCLEAMREPP--WARLAGEAFSLITG 296 (410)
T ss_pred HHHhcChh--hHHHHHHHHHHcCC--------cchHHHHHHHhcCcH--HHHHHHHHHHHhhC
Confidence 77777765 88888888887642 235677777777654 88888888877763
No 64
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=99.10 E-value=4.3e-08 Score=93.07 Aligned_cols=231 Identities=14% Similarity=0.025 Sum_probs=164.3
Q ss_pred cCCccchhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCC
Q 009632 135 AGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDD 214 (530)
Q Consensus 135 ~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~ 214 (530)
.+++..++..+...+..... ...+..+...+.|.++.||..++++|+.+-. +...+.+..++.++
T Consensus 65 ~d~~~ev~~~aa~al~~~~~-------~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~--------~~a~~~L~~~L~~~ 129 (410)
T TIGR02270 65 EADEPGRVACAALALLAQED-------ALDLRSVLAVLQAGPEGLCAGIQAALGWLGG--------RQAEPWLEPLLAAS 129 (410)
T ss_pred hCCChhHHHHHHHHHhccCC-------hHHHHHHHHHhcCCCHHHHHHHHHHHhcCCc--------hHHHHHHHHHhcCC
Confidence 55666666655444432111 1236777888889999999999999987533 45677888889999
Q ss_pred chhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcH
Q 009632 215 QDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEA 294 (530)
Q Consensus 215 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~ 294 (530)
++.||..++.+++... ..-.+.+..+++|.++.||..++.+++.+.. ....|.+...+.|.++
T Consensus 130 ~p~vR~aal~al~~r~---------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~--------~~a~~~L~~al~d~~~ 192 (410)
T TIGR02270 130 EPPGRAIGLAALGAHR---------HDPGPALEAALTHEDALVRAAALRALGELPR--------RLSESTLRLYLRDSDP 192 (410)
T ss_pred ChHHHHHHHHHHHhhc---------cChHHHHHHHhcCCCHHHHHHHHHHHHhhcc--------ccchHHHHHHHcCCCH
Confidence 9999999988777622 1134667778889999999999999998863 3556778888999999
Q ss_pred HHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHH
Q 009632 295 EVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDV 374 (530)
Q Consensus 295 ~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~v 374 (530)
+||.+|+.++..+.. . .-.+.+..+..+..+..+..+...+... |.. ..++.+..+++|+. +
T Consensus 193 ~VR~aA~~al~~lG~----~----~A~~~l~~~~~~~g~~~~~~l~~~lal~----~~~----~a~~~L~~ll~d~~--v 254 (410)
T TIGR02270 193 EVRFAALEAGLLAGS----R----LAWGVCRRFQVLEGGPHRQRLLVLLAVA----GGP----DAQAWLRELLQAAA--T 254 (410)
T ss_pred HHHHHHHHHHHHcCC----H----hHHHHHHHHHhccCccHHHHHHHHHHhC----Cch----hHHHHHHHHhcChh--h
Confidence 999999999977743 2 1123333333445544544444444333 222 56778888888865 9
Q ss_pred HHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 009632 375 RLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 425 (530)
Q Consensus 375 r~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~ 425 (530)
|..++.+++.+.. ...++.+...+.++. +|..|-+++..+.
T Consensus 255 r~~a~~AlG~lg~--------p~av~~L~~~l~d~~--~aR~A~eA~~~It 295 (410)
T TIGR02270 255 RREALRAVGLVGD--------VEAAPWCLEAMREPP--WARLAGEAFSLIT 295 (410)
T ss_pred HHHHHHHHHHcCC--------cchHHHHHHHhcCcH--HHHHHHHHHHHhh
Confidence 9999999988654 457778888877765 7888888888875
No 65
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=99.09 E-value=9.5e-10 Score=106.09 Aligned_cols=255 Identities=18% Similarity=0.166 Sum_probs=209.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccC
Q 009632 251 QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSD 330 (530)
Q Consensus 251 ~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d 330 (530)
.-++..-|......|....+.+.++.....++|.++..+.-.+ --...+..+-.+...+....+...++|.+.++...
T Consensus 264 ~lks~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~~ 341 (690)
T KOG1243|consen 264 RLKSVEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFKS 341 (690)
T ss_pred ccCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccccccchhhhHHHHhcC
Confidence 3345666777777777777777777777788888887765433 12223334444555555556778899999999999
Q ss_pred CcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCC
Q 009632 331 SSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRH 410 (530)
Q Consensus 331 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~ 410 (530)
.+..+|...++.+..++..+.+..+.+++.|.+...+.|.++.+|+.++..+..++..++......+++..+.++..|.+
T Consensus 342 ~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~~ 421 (690)
T KOG1243|consen 342 PDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDEH 421 (690)
T ss_pred cchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999988777889999998888999
Q ss_pred hHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhccCCChH
Q 009632 411 WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYL 490 (530)
Q Consensus 411 ~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~ 490 (530)
..+|....-+++.++..+.+......+.-.+.+.+.|+...-|.++...+....+.+........++|.+..+.-|++..
T Consensus 422 ~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~va~kIlp~l~pl~vd~e~~ 501 (690)
T KOG1243|consen 422 GGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEVANKILPSLVPLTVDPEKT 501 (690)
T ss_pred CcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhhhhhccccccccccCcccc
Confidence 99999999999999887765543333444556678999999999999999988888877777788999999999999999
Q ss_pred HHHHHHHHHHHHhhhcC
Q 009632 491 YRMTILRAISLLAPVMG 507 (530)
Q Consensus 491 vr~~a~~~l~~i~~~~~ 507 (530)
+|..+..++..+.+.+.
T Consensus 502 vr~~a~~~i~~fl~kl~ 518 (690)
T KOG1243|consen 502 VRDTAEKAIRQFLEKLE 518 (690)
T ss_pred hhhHHHHHHHHHHhhhh
Confidence 99999999998876554
No 66
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=99.06 E-value=4e-09 Score=101.88 Aligned_cols=254 Identities=15% Similarity=0.169 Sum_probs=196.5
Q ss_pred cCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcC
Q 009632 172 CQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQ 251 (530)
Q Consensus 172 ~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~ 251 (530)
+.-.+..-|......|......++.+.....++|.+...+.-.+ --...+..+-.++..+..+.|...++|.+.++++
T Consensus 263 l~lks~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~ 340 (690)
T KOG1243|consen 263 LRLKSVEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFK 340 (690)
T ss_pred cccCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccccccchhhhHHHHhc
Confidence 44566777888888888888888888888889998887665443 1122344455566666667788889999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCC
Q 009632 252 DKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDS 331 (530)
Q Consensus 252 d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~ 331 (530)
..+..+|...++.+..++..+.++.....++|.+...+.|+++.+|...++++..++..++...+-..++.++..+..|.
T Consensus 341 ~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~ 420 (690)
T KOG1243|consen 341 SPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDE 420 (690)
T ss_pred CcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCccc
Confidence 99999999999999999999988888889999999999999999999999999999999888866677888887777788
Q ss_pred cHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCCh
Q 009632 332 SQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHW 411 (530)
Q Consensus 332 ~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~ 411 (530)
+..+|....-+++.++.......-...+.-.+...++|+...-|.++...+....+.+....+...|+|.+.-+..|++.
T Consensus 421 ~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~va~kIlp~l~pl~vd~e~ 500 (690)
T KOG1243|consen 421 HGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEVANKILPSLVPLTVDPEK 500 (690)
T ss_pred cCcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhhhhhccccccccccCccc
Confidence 88888777777777776654333222222334446788888888888888888877777777777888888888888888
Q ss_pred HHHHHHHHHHHHHHhh
Q 009632 412 RVRLAIIEYIPLLASQ 427 (530)
Q Consensus 412 ~~R~~~~~~l~~l~~~ 427 (530)
.+|..+...+......
T Consensus 501 ~vr~~a~~~i~~fl~k 516 (690)
T KOG1243|consen 501 TVRDTAEKAIRQFLEK 516 (690)
T ss_pred chhhHHHHHHHHHHhh
Confidence 8888877777665443
No 67
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=7.7e-06 Score=79.23 Aligned_cols=437 Identities=12% Similarity=0.113 Sum_probs=229.8
Q ss_pred hhhcccccccc-ccCCchHHHHHHHHHHhcccccCCCccchhcchhHHHhhh--cccchHHHHHHHHHHHHHHhhcChhh
Q 009632 45 TRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLC--TVEETCVRDKAVESLCRIGSQMRESD 121 (530)
Q Consensus 45 ~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~--~d~~~~vR~~a~~~l~~l~~~~~~~~ 121 (530)
..+.++..++. +.+.|+.....|-.+++++ |+.+....+.+-+..++ .+..+.||+.|+-|+-.+.+..++-.
T Consensus 108 l~klvin~iknDL~srn~~fv~LAL~~I~ni----G~re~~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~ 183 (938)
T KOG1077|consen 108 LMKLVINSIKNDLSSRNPTFVCLALHCIANI----GSREMAEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLV 183 (938)
T ss_pred HHHHHHHHHHhhhhcCCcHHHHHHHHHHHhh----ccHhHHHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCcccc
Confidence 33344444544 5566666666666777776 55565555555555554 34578899999999999999866544
Q ss_pred hhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChHHHHHHHHHHHhh---cC----C---------CChhHHHHHHH
Q 009632 122 LVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQL---CQ----D---------DMPMVRRSAAS 185 (530)
Q Consensus 122 ~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l---~~----d---------~~~~vR~~a~~ 185 (530)
-.+....-+..+++|.+-.+-.++..++..++++-+++++.-+.+.+..+ +. | +.|...-.++.
T Consensus 184 ~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~r 263 (938)
T KOG1077|consen 184 NPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLR 263 (938)
T ss_pred ChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHH
Confidence 34455666777778877777788888888888888777554333333222 11 1 23444444444
Q ss_pred HHHHHHhhhcchhhHHHHHHHHHHhhcCCc----------hhHHHHHHHHHHHHhhhcCc-hhhhhccHHHHHHhcCCCC
Q 009632 186 NLGKFAATVEPAHLKTDIMSIFEDLTQDDQ----------DSVRLLAVEGCAALGKLLEP-QDCVAHILPVIVNFSQDKS 254 (530)
Q Consensus 186 ~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~----------~~vr~~a~~~l~~l~~~~~~-~~~~~~~~~~l~~~~~d~~ 254 (530)
.|..+ ..-.+......+...+..+++-.+ ...+.+.+--..+++-++.+ ..........+..++++++
T Consensus 264 lLq~~-p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE 342 (938)
T KOG1077|consen 264 LLQIY-PTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRE 342 (938)
T ss_pred HHHhC-CCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhccc
Confidence 44433 100011111222222222222111 11222222222333444433 3344445666667788888
Q ss_pred HHHHHHHHHHHHHHHHHhC-CcccccchHHHHHHhcC-CCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCc
Q 009632 255 WRVRYMVANQLYELCEAVG-PEPTRMDLVPAYVRLLR-DNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSS 332 (530)
Q Consensus 255 ~~vr~~~~~~l~~l~~~~~-~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~ 332 (530)
..+|..+.+.+..++..-. .+....+ ...++..++ +.+-.+|..|+..|-.+|..-..+.+...++.++ ...+
T Consensus 343 ~NiRYLaLEsm~~L~ss~~s~davK~h-~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~IV~elLqYL----~tAd 417 (938)
T KOG1077|consen 343 TNIRYLALESMCKLASSEFSIDAVKKH-QDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQIVAELLQYL----ETAD 417 (938)
T ss_pred ccchhhhHHHHHHHHhccchHHHHHHH-HHHHHHHhccccchHHHHHHHHHHHHHhchhhHHHHHHHHHHHH----hhcc
Confidence 8899988888888776511 1111222 455666666 8888999999999999988766655555555555 4467
Q ss_pred HHHHHHHHHHHHhhccccCHH--HHHHhHHHHHHHhhcCC-ChHHHHHHHHhhHHhhhhhc-hhHHHhhHHHHHHHHhcC
Q 009632 333 QHVRSALASVIMGMAPLLGKD--ATIEQLLPIFLSLLKDE-FPDVRLNIISKLDQVNQVIG-IDLLSQSLLPAIVELAED 408 (530)
Q Consensus 333 ~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~-~~~~~~~l~~~l~~~~~~ 408 (530)
+.+|+.++--+.-+++.+..+ .+.+.++. ++..-.|- +.+|-... ++... .+.+...-...+.+.+..
T Consensus 418 ~sireeivlKvAILaEKyAtDy~WyVdviLq-Liriagd~vsdeVW~Rv-------vQiVvNnedlq~yaak~~fe~Lq~ 489 (938)
T KOG1077|consen 418 YSIREEIVLKVAILAEKYATDYSWYVDVILQ-LIRIAGDYVSDEVWYRV-------VQIVVNNEDLQGYAAKRLFEYLQK 489 (938)
T ss_pred hHHHHHHHHHHHHHHHHhcCCcchhHHHHHH-HHHHhcccccHHHHHHh-------heeEecchhhhHHHHHHHHHHHhh
Confidence 788887777777676655432 12222222 11222221 12222222 11111 122222233333333333
Q ss_pred CC--hHHHHHHHHHHHHHHhhhCh--hhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhc
Q 009632 409 RH--WRVRLAIIEYIPLLASQLGV--GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI 484 (530)
Q Consensus 409 ~~--~~~R~~~~~~l~~l~~~~~~--~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~ 484 (530)
+. ..+-..+-..+|..+..... ..-....+..+.+-+.-..+.-|...+.++-.++..+. + ....+...+....
T Consensus 490 ~a~hE~mVKvggyiLGEfg~LIa~~prss~~~qFsllh~K~~~~s~~tr~lLLtTyiKl~nl~P-E-i~~~v~~vFq~~~ 567 (938)
T KOG1077|consen 490 PACHENMVKVGGYILGEFGNLIADDPRSSPAVQFSLLHEKLHLCSPVTRALLLTTYIKLINLFP-E-IKSNVQKVFQLYS 567 (938)
T ss_pred hHHHHHHHHhhhhhhhhhhhhhcCCCCCChHHHHHHHHHHhccCChhHHHHHHHHHHHHHhhCh-h-hhHHHHHHHHhhc
Confidence 21 12222233333433333221 11122334444444444445556666666666555442 2 2234444455555
Q ss_pred cCCChHHHHHHHHHHHH
Q 009632 485 NNPHYLYRMTILRAISL 501 (530)
Q Consensus 485 ~d~~~~vr~~a~~~l~~ 501 (530)
+-.|.++++.|++.+.-
T Consensus 568 n~~D~ElQqRa~EYLql 584 (938)
T KOG1077|consen 568 NLIDVELQQRAVEYLQL 584 (938)
T ss_pred ccCCHHHHHHHHHHHHH
Confidence 56788888888887763
No 68
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=5.2e-06 Score=81.68 Aligned_cols=362 Identities=12% Similarity=0.104 Sum_probs=191.7
Q ss_pred ccchhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchh
Q 009632 138 WFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDS 217 (530)
Q Consensus 138 ~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~ 217 (530)
+...++..+.+++.+..-++++...++.|.+.++++.+++.||+.|+.+...+....+. ..+.+++...+++.+.+.-
T Consensus 117 ~s~nq~vVglAL~alg~i~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~--l~e~f~~~~~~lL~ek~hG 194 (866)
T KOG1062|consen 117 NSSNQYVVGLALCALGNICSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPD--LVEHFVIAFRKLLCEKHHG 194 (866)
T ss_pred cCCCeeehHHHHHHhhccCCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCch--HHHHhhHHHHHHHhhcCCc
Confidence 44455556666666666667777777777777777777777777777777777765544 2345555555555555544
Q ss_pred HHHHHHHHHHHHhhhcCc-----hhhhhccHHHH-----------------------------HHhcCCCCHHHHHHHHH
Q 009632 218 VRLLAVEGCAALGKLLEP-----QDCVAHILPVI-----------------------------VNFSQDKSWRVRYMVAN 263 (530)
Q Consensus 218 vr~~a~~~l~~l~~~~~~-----~~~~~~~~~~l-----------------------------~~~~~d~~~~vr~~~~~ 263 (530)
|-..++..+..+++.-+. ....+.++..+ ..++...+.+.......
T Consensus 195 VL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~D 274 (866)
T KOG1062|consen 195 VLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMND 274 (866)
T ss_pred eeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 444444444444333111 00011111111 11223333444444555
Q ss_pred HHHHHHHHhCC--cccccchHHHHHHhc-CCCcHHHHHHHHHHHHHHHHhhCHH-----------------HHHhhhhHh
Q 009632 264 QLYELCEAVGP--EPTRMDLVPAYVRLL-RDNEAEVRIAAAGKVTKFCRILNPE-----------------LAIQHILPC 323 (530)
Q Consensus 264 ~l~~l~~~~~~--~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~-----------------~~~~~l~~~ 323 (530)
.|++++..... ..+...+...+...+ -++++..|..|+..|+.|...-+.+ ...+.=-..
T Consensus 275 iLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~t 354 (866)
T KOG1062|consen 275 ILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRST 354 (866)
T ss_pred HHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHH
Confidence 55555543211 111111222222221 2445677777777777776532211 111222344
Q ss_pred HhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHH
Q 009632 324 VKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV 403 (530)
Q Consensus 324 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~ 403 (530)
+.+.++|++..+|..+++..-.+...-.-....++++ ..|...+++.|...+..+..+++.+.++. ...+..+.
T Consensus 355 IleCL~DpD~SIkrralELs~~lvn~~Nv~~mv~eLl----~fL~~~d~~~k~~~as~I~~laEkfaP~k--~W~idtml 428 (866)
T KOG1062|consen 355 ILECLKDPDVSIKRRALELSYALVNESNVRVMVKELL----EFLESSDEDFKADIASKIAELAEKFAPDK--RWHIDTML 428 (866)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHhccccHHHHHHHHH----HHHHhccHHHHHHHHHHHHHHHHhcCCcc--hhHHHHHH
Confidence 5667789999999999998888776554444444444 44444578888888888888888887652 22333444
Q ss_pred HHhcCCChHHHHHHHHHHHHHHh-hhChhh---HHHHHHHHHHH-HhcCCcHHHHHHHHHHHHHHHHHhCh--------h
Q 009632 404 ELAEDRHWRVRLAIIEYIPLLAS-QLGVGF---FDDKLGALCMQ-WLQDKVYSIRDAAANNLKRLAEEFGP--------E 470 (530)
Q Consensus 404 ~~~~~~~~~~R~~~~~~l~~l~~-~~~~~~---~~~~~~~~l~~-~l~d~~~~Vr~~a~~~l~~l~~~~~~--------~ 470 (530)
+.++....-+|...+..+-.+.. .++... +.....-.... ++.-.....-..|.+|+|+....+-. .
T Consensus 429 ~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~ 508 (866)
T KOG1062|consen 429 KVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIK 508 (866)
T ss_pred HHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCc
Confidence 44444333344444444443332 223221 11111111111 11123344577788899887644311 1
Q ss_pred HHhhhhHHHHHhhccC--CChHHHHHHHHHHHHHhhhcC
Q 009632 471 WAMQHITPQVLEMINN--PHYLYRMTILRAISLLAPVMG 507 (530)
Q Consensus 471 ~~~~~i~~~l~~~~~d--~~~~vr~~a~~~l~~i~~~~~ 507 (530)
....+++..+.+.+.. .+..++..|+.|+.++...+.
T Consensus 509 vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~ 547 (866)
T KOG1062|consen 509 VTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFH 547 (866)
T ss_pred CCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcc
Confidence 1235667777766543 457788999999888876554
No 69
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=2.5e-06 Score=82.75 Aligned_cols=394 Identities=12% Similarity=0.098 Sum_probs=219.1
Q ss_pred ccchhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChHH
Q 009632 81 VEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDIL 160 (530)
Q Consensus 81 ~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~ 160 (530)
+...-.+.+-+..++++.-+.+|..|+-.+-+++-..++. ..-..|.+.+-+.|+++.|..+|...+++++.+-+..+
T Consensus 139 pdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA--lr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkny 216 (877)
T KOG1059|consen 139 PDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA--LRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNY 216 (877)
T ss_pred chhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh--HhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccc
Confidence 4444556666777888999999999999888887766542 23356777777889999999999999999998877655
Q ss_pred HHHHHHHHHhhcCC--CChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhh---cC-
Q 009632 161 KTELRSIYTQLCQD--DMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKL---LE- 234 (530)
Q Consensus 161 ~~~l~~~l~~l~~d--~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~---~~- 234 (530)
.+ +-|.|.+++.+ .+| +-...++.++++... .+.....+++.+.+++..... ...-.+++..+... .|
T Consensus 217 L~-LAP~ffkllttSsNNW-mLIKiiKLF~aLtpl--EPRLgKKLieplt~li~sT~A--mSLlYECvNTVVa~s~s~g~ 290 (877)
T KOG1059|consen 217 LQ-LAPLFYKLLVTSSNNW-VLIKLLKLFAALTPL--EPRLGKKLIEPITELMESTVA--MSLLYECVNTVVAVSMSSGM 290 (877)
T ss_pred cc-ccHHHHHHHhccCCCe-ehHHHHHHHhhcccc--CchhhhhhhhHHHHHHHhhHH--HHHHHHHHHHheeehhccCC
Confidence 43 55666665543 344 333344444444332 133445677777777765432 11222333333222 12
Q ss_pred -c-hhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC
Q 009632 235 -P-QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN 312 (530)
Q Consensus 235 -~-~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~ 312 (530)
. .......+.-+..++.|.++..|.-.+-+++.++....+.. ..--..+++++.|.++.+|..|+..+..+...-.
T Consensus 291 ~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~V--qa~kdlIlrcL~DkD~SIRlrALdLl~gmVskkN 368 (877)
T KOG1059|consen 291 SDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAV--QAHKDLILRCLDDKDESIRLRALDLLYGMVSKKN 368 (877)
T ss_pred CCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHH--HHhHHHHHHHhccCCchhHHHHHHHHHHHhhhhh
Confidence 1 11233456667778999999999999999999987654332 3345678899999999999999988887765322
Q ss_pred HHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHH---HHHHhHHHHHHHhhc---------------C---CC
Q 009632 313 PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSLLK---------------D---EF 371 (530)
Q Consensus 313 ~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~---------------d---~~ 371 (530)
...+...++..+. .......|...+..+-.+|+.-... .|. -.+.++..+.+ | ..
T Consensus 369 l~eIVk~LM~~~~---~ae~t~yrdell~~II~iCS~snY~~ItdFE-WYlsVlveLa~l~~~~~G~~I~eQi~Dv~iRV 444 (877)
T KOG1059|consen 369 LMEIVKTLMKHVE---KAEGTNYRDELLTRIISICSQSNYQYITDFE-WYLSVLVELARLEGTRHGSLIAEQIIDVAIRV 444 (877)
T ss_pred HHHHHHHHHHHHH---hccchhHHHHHHHHHHHHhhhhhhhhhhhHH-HHHHHHHHHHhccccchhhHHHHHHHHHheec
Confidence 2222222222221 1122255666665555555432211 110 01111211111 0 12
Q ss_pred hHHHHHHHHhhHHhhhhhchhHHHhhHHHHHH-HHhcCC-ChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcC--
Q 009632 372 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV-ELAEDR-HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQD-- 447 (530)
Q Consensus 372 ~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~-~~~~~~-~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d-- 447 (530)
+.+|..++..+..+... |.+. ....+. -..+-.+|++++|..+..+... ..++..+.+--.|
T Consensus 445 ~~iR~fsV~~m~~Ll~~-----------~~~~~s~q~n~~l~eVL~AaaWi~GEyse~ven~---~~~leamlrpr~~~l 510 (877)
T KOG1059|consen 445 PSIRPFSVSQMSALLDD-----------PLLAGSAQINSQLCEVLYAAAWILGEYSEFVENP---NDTLEAMLRPRSDLL 510 (877)
T ss_pred hhhhHhHHHHHHHHHhc-----------hhhccchhhccchhHHHHHHHHHHHHHHHHhhCH---HHHHHHHhcCccccC
Confidence 22333333322222110 0000 001111 3567788999999988766532 1233333322221
Q ss_pred --CcHHH-HHHHHHHHHHHHHHhChhHH-------hhhhHHHHHhhccCCChHHHHHHHHHHHHH
Q 009632 448 --KVYSI-RDAAANNLKRLAEEFGPEWA-------MQHITPQVLEMINNPHYLYRMTILRAISLL 502 (530)
Q Consensus 448 --~~~~V-r~~a~~~l~~l~~~~~~~~~-------~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i 502 (530)
....| -.++.+.++.++....+.+. .+.++..+.++....+.+|++.|..++.-+
T Consensus 511 p~~iq~vyvqni~Klfc~~~~~~ee~~~~e~~~sL~~~i~~~l~qf~~s~d~EvQERA~~~~~li 575 (877)
T KOG1059|consen 511 PGHIQAVYVQNIVKLFCSWCSQFEETKDFEGIVSLVNLILSFLEQFSGSSDLEVQERASEVLELI 575 (877)
T ss_pred chHHHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHhhcccCccchhHHHHHHHHHHHH
Confidence 11111 23334444444444433321 244566666667788999999976666544
No 70
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=2.4e-05 Score=79.01 Aligned_cols=415 Identities=14% Similarity=0.063 Sum_probs=232.5
Q ss_pred cChhHHHHHHHhhcHHHHHHhhChHhhhhcccccccc-c-cCCc-hHHHHHHHHHHhcccc-cCCCc-----------cc
Q 009632 19 KNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-N-NDDD-DEVLLAMAEELGVFIP-YVGGV-----------EH 83 (530)
Q Consensus 19 ~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~-~d~~-~~vr~~~~~~l~~~~~-~~~~~-----------~~ 83 (530)
-+.|+..|..|...|.++-.. ..+++.+.+ + .|.. ..||++++..+.+... ..... +-
T Consensus 14 ~d~d~~~R~~AE~~L~q~~K~-------pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~I~e~d 86 (1010)
T KOG1991|consen 14 IDSDAKERKAAEQQLNQLEKQ-------PGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPFGIPEED 86 (1010)
T ss_pred cCCChHHHHHHHHHHHHhhcC-------CcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcCCCChHH
Confidence 355699999999988765322 233444444 3 3333 3579999999976543 22211 11
Q ss_pred hhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCC-----Ch
Q 009632 84 AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSA-----PD 158 (530)
Q Consensus 84 ~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~-----~~ 158 (530)
...+-.-+..........+|-.-..++..|.+.--+ ..+..+.+.+..++++.+...-+.+..++..+++.- .+
T Consensus 87 k~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p-~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~ee 165 (1010)
T KOG1991|consen 87 KAVIRENILETIVQVPELIRVQLTACLNTIIKADYP-EQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEE 165 (1010)
T ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCc-ccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccc
Confidence 122222222222233677888888888888776444 445668899999999888777778888887775421 11
Q ss_pred ---------HHHHHHHHHHHhhcCCCChh---HHHHHHHHHHHHHhhh-cchhhH----HHHHHHHHHhhc---------
Q 009632 159 ---------ILKTELRSIYTQLCQDDMPM---VRRSAASNLGKFAATV-EPAHLK----TDIMSIFEDLTQ--------- 212 (530)
Q Consensus 159 ---------~~~~~l~~~l~~l~~d~~~~---vR~~a~~~l~~l~~~~-~~~~~~----~~l~~~l~~~~~--------- 212 (530)
...+.++..+..++.+++.. ..+..++.+..++.+- |.+... ...+.++...++
T Consensus 166 R~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~E~l~ 245 (1010)
T KOG1991|consen 166 RQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPVPVEVLS 245 (1010)
T ss_pred cccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCChhccc
Confidence 12344555555666666543 4445555554544432 222222 222333333332
Q ss_pred -CC-------chhHHHHHHHHHHHHhhhcCchhh----------------hhccHHHHHHhcC---CC---CHHHHHHHH
Q 009632 213 -DD-------QDSVRLLAVEGCAALGKLLEPQDC----------------VAHILPVIVNFSQ---DK---SWRVRYMVA 262 (530)
Q Consensus 213 -d~-------~~~vr~~a~~~l~~l~~~~~~~~~----------------~~~~~~~l~~~~~---d~---~~~vr~~~~ 262 (530)
|+ -...++-|+..+.++.+.+|+... ...++..+.+.+. .. +++|-..+.
T Consensus 246 ~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~rvl~~~l 325 (1010)
T KOG1991|consen 246 LDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLSDRVLYYLL 325 (1010)
T ss_pred CChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH
Confidence 11 124678899999999888775211 1112222222111 11 223333333
Q ss_pred HHHHHHHHHhCCcccccchHHHH--------HHhc--CC---------CcHHH-------------HHHHHHHHHHHHHh
Q 009632 263 NQLYELCEAVGPEPTRMDLVPAY--------VRLL--RD---------NEAEV-------------RIAAAGKVTKFCRI 310 (530)
Q Consensus 263 ~~l~~l~~~~~~~~~~~~l~~~l--------~~~l--~d---------~~~~v-------------r~~a~~~l~~~~~~ 310 (530)
..+.+... ...+-..+-|.+ ..++ +| +..-+ +.+|...+..++..
T Consensus 326 ~fl~~~Vs---~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~K 402 (1010)
T KOG1991|consen 326 NFLEQCVS---HASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSK 402 (1010)
T ss_pred HHHHHhcc---HHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHh
Confidence 33322211 111111111111 1111 22 22223 34666677777776
Q ss_pred hCHHHHHhhhhHhHhHhcc--------CCcHHHHHHHHHHHHhhccccCH-----HHHHHhHHHHHHHhhcCCChHHHHH
Q 009632 311 LNPELAIQHILPCVKELSS--------DSSQHVRSALASVIMGMAPLLGK-----DATIEQLLPIFLSLLKDEFPDVRLN 377 (530)
Q Consensus 311 ~~~~~~~~~l~~~l~~~~~--------d~~~~vr~~~~~~l~~l~~~~~~-----~~~~~~l~~~l~~~l~d~~~~vr~~ 377 (530)
-|++.+ +.+++.+.+.++ ..+++-+.+++..++.++..+.+ ......+.++++..++++.--.|..
T Consensus 403 R~ke~l-~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrar 481 (1010)
T KOG1991|consen 403 RGKETL-PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRAR 481 (1010)
T ss_pred cchhhh-hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHH
Confidence 666544 455555554433 35678889999999999865543 2334566788888889999999999
Q ss_pred HHHhhHHhh-hhhchhHHHhhHHHHHHHHhc-CCChHHHHHHHHHHHHHHhhhCh--hhHHHHHHHHHHHHh
Q 009632 378 IISKLDQVN-QVIGIDLLSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGV--GFFDDKLGALCMQWL 445 (530)
Q Consensus 378 a~~~l~~l~-~~~~~~~~~~~l~~~l~~~~~-~~~~~~R~~~~~~l~~l~~~~~~--~~~~~~~~~~l~~~l 445 (530)
|+..++.++ ..+........++....+.+. |.+-.+|..|+-++..+...... +.+..++-|.+.+++
T Consensus 482 ac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL 553 (1010)
T KOG1991|consen 482 ACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELL 553 (1010)
T ss_pred HHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHH
Confidence 999999988 344444444455555555555 77889999999999988765442 224444444444443
No 71
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.97 E-value=5.7e-05 Score=77.99 Aligned_cols=443 Identities=15% Similarity=0.163 Sum_probs=258.2
Q ss_pred ChhHHHHHHHhhcHHHHHHhhChHhhhhccccccccccCCchHHHHHHHHHHhcccccCCC---ccchhcchhHHHhhhc
Q 009632 20 NDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGG---VEHAHVLLPPLETLCT 96 (530)
Q Consensus 20 ~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~~~~~l~~~~~~~~~---~~~~~~l~~~l~~l~~ 96 (530)
++|...+..--..++....++||+.... ++|+-. ..++....|. ..|+-+..+..+ ..|.+.++|+...+..
T Consensus 402 ~~d~~~~~~ld~~IGSAV~AmGPe~vL~-~lpLnl-~~~s~~~~Rs---WLLPvLR~~i~~A~La~F~~~ivpla~sl~~ 476 (1176)
T KOG1248|consen 402 SPDFFHKLQLDQCIGSAVRAMGPERVLT-ILPLNL-HAESLSFTRS---WLLPVLRDYIIGASLAFFTEYIVPLAMSLQL 476 (1176)
T ss_pred CCCCccHHHHHHHHHHHHHhhCHHHHHH-Hcchhc-cccccccchh---HhHHHHHHhhccCcHHHHHHHHHHHHHHHHH
Confidence 5666666666777788888899986643 223211 1222223332 223333332221 2356677777655431
Q ss_pred ------ccchHHHHHHHHHHHH-HHhhcC-----hhhh---hhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCC---Ch
Q 009632 97 ------VEETCVRDKAVESLCR-IGSQMR-----ESDL---VDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSA---PD 158 (530)
Q Consensus 97 ------d~~~~vR~~a~~~l~~-l~~~~~-----~~~~---~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~---~~ 158 (530)
+....++ ..++|.. +...++ |-+. ...+-|.+...+.... ..|...|..+..+.... .+
T Consensus 477 K~~~l~~~~~~~~--~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al~~~~-elr~~Ic~sL~~Lv~~n~~~~~ 553 (1176)
T KOG1248|consen 477 KAKKLKEAGSQVS--LYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAALLKRP-ELRETICNSLRMLVEQNKPSSD 553 (1176)
T ss_pred HHHhhhhccCcHH--HHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHHhcch-HhHHHHHHHHHHHHHcCCCcch
Confidence 1111221 2222221 222222 1111 1224444444443333 77887777777766553 11
Q ss_pred ---------HHHHHHHHHHHhhcCCC------ChhHHHHHHHHHH-HHHhhhcchhhHHHHHHHHHHhhcCCchhHHHH-
Q 009632 159 ---------ILKTELRSIYTQLCQDD------MPMVRRSAASNLG-KFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLL- 221 (530)
Q Consensus 159 ---------~~~~~l~~~l~~l~~d~------~~~vR~~a~~~l~-~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~- 221 (530)
.+....+|.+...-..+ ....|...+..+. .+....+ ......+...+.++..+.++.++..
T Consensus 554 a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~t~-~dv~~~l~~s~~e~as~~~~s~~~~~ 632 (1176)
T KOG1248|consen 554 AAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTVTP-TDVVGSLKDSAGELASDLDESVASFK 632 (1176)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHhHhccchhhhhhHH
Confidence 13456777777765543 3344555555544 2333222 2334556667777777776555443
Q ss_pred ---HHHHHHHHhhhcCchhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCccc----ccchHHHHHHhcCCCcH
Q 009632 222 ---AVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT----RMDLVPAYVRLLRDNEA 294 (530)
Q Consensus 222 ---a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~----~~~l~~~l~~~l~d~~~ 294 (530)
-+..+..++.....+. ...+..+.....+..+..++.-+...|..+...-.-+.. ...+...+...+++...
T Consensus 633 ~~slLdl~~~~a~~~~e~~-vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~ 711 (1176)
T KOG1248|consen 633 TLSLLDLLIALAPVQTESQ-VSKLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSS 711 (1176)
T ss_pred HHHHHHHHHhhhccccchh-HHHHHHhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccch
Confidence 3333333344333332 233334444455566788999999999988876211112 22344445555566667
Q ss_pred HHHHHHHHHHHHHHHhhCHH--HHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhc--c---ccCHH---HHHHhHHHHHH
Q 009632 295 EVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMA--P---LLGKD---ATIEQLLPIFL 364 (530)
Q Consensus 295 ~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~--~---~~~~~---~~~~~l~~~l~ 364 (530)
.+|...++++..+.+..+.+ .+....+|-+.=..++.+...|..+..++..++ . ..|.+ ...+.+++.+.
T Consensus 712 ~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Is 791 (1176)
T KOG1248|consen 712 PAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIIS 791 (1176)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHH
Confidence 78999999999999988844 333444444433347777777777777766665 2 22422 24555666666
Q ss_pred HhhcCCChHHHHHHHHhhHHhhhhh---chhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhH---HHHHH
Q 009632 365 SLLKDEFPDVRLNIISKLDQVNQVI---GIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF---DDKLG 438 (530)
Q Consensus 365 ~~l~d~~~~vr~~a~~~l~~l~~~~---~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~---~~~~~ 438 (530)
..+-.+...++...+-++..+...+ ..+.....++..+.-++...+..+|.+|+.++..++..++.... .+.++
T Consensus 792 agl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL 871 (1176)
T KOG1248|consen 792 AGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELL 871 (1176)
T ss_pred hhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHH
Confidence 5554444444444344444444333 23444567788888888999999999999999999998886654 46689
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHH
Q 009632 439 ALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA 472 (530)
Q Consensus 439 ~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~ 472 (530)
|.++.+.+|....+|..+-..+..+++.+|.+..
T Consensus 872 ~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eL 905 (1176)
T KOG1248|consen 872 PSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEEL 905 (1176)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHH
Confidence 9999999999999999999999999999997643
No 72
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=98.96 E-value=3.5e-06 Score=84.46 Aligned_cols=238 Identities=13% Similarity=0.080 Sum_probs=151.3
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhc
Q 009632 162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAH 241 (530)
Q Consensus 162 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 241 (530)
..+.+-+.+.....+.++++-.-..+..+++.-|.+. -..++.+.+-++|+|+.+|..|+++++.+ +...+...
T Consensus 54 ssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~--lLavNti~kDl~d~N~~iR~~AlR~ls~l----~~~el~~~ 127 (757)
T COG5096 54 SSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELA--LLAVNTIQKDLQDPNEEIRGFALRTLSLL----RVKELLGN 127 (757)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHH--HHHHHHHHhhccCCCHHHHHHHHHHHHhc----ChHHHHHH
Confidence 3444555555557889999999999999988766432 34678899999999999999999999875 34467788
Q ss_pred cHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccc-hHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhh
Q 009632 242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMD-LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI 320 (530)
Q Consensus 242 ~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~-l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l 320 (530)
+++.+.++++|+++.||+.|+-++..+-+. +++.+.+. ....+..++.|++|.|..+|+.++..+... ....+...+
T Consensus 128 ~~~~ik~~l~d~~ayVRk~Aalav~kly~l-d~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e-~a~~~~~~~ 205 (757)
T COG5096 128 IIDPIKKLLTDPHAYVRKTAALAVAKLYRL-DKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE-LAHGYSLEV 205 (757)
T ss_pred HHHHHHHHccCCcHHHHHHHHHHHHHHHhc-CHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh-hhhhHHHHH
Confidence 999999999999999999999999998765 22333343 677788889999999999999999988765 111121222
Q ss_pred hHhHhHhc---cCC-cHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHh
Q 009632 321 LPCVKELS---SDS-SQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQ 396 (530)
Q Consensus 321 ~~~l~~~~---~d~-~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 396 (530)
...+.++. .+. ...++....+.+.........+ ...+...+...++-.++.+-..++..+-.+...+....+..
T Consensus 206 ~~~i~~l~~~~~~~~~~~~~~~~le~L~~~~~~~~~s--~~~~~~~~~~~~~~~n~~vl~~av~~i~~l~~~~~~~~~~~ 283 (757)
T COG5096 206 ILRIPQLDLLSLSVSTEWLLLIILEVLTERVPTTPDS--AEDFEERLSPPLQHNNAEVLLIAVKVILRLLVFLPSNNLFL 283 (757)
T ss_pred HHHhhhccchhhhhhHHHHHHHHHHHHHccCCCCCCc--HHHHHHhccchhhhCcHHHHHHHHHHHHHHhhhhccccHHH
Confidence 22222211 111 1334444444444333222211 11111112222334556666666666666655555444444
Q ss_pred hHHHHHHHHhcCC
Q 009632 397 SLLPAIVELAEDR 409 (530)
Q Consensus 397 ~l~~~l~~~~~~~ 409 (530)
...|.+..++..+
T Consensus 284 ~~~~~l~~Ll~~~ 296 (757)
T COG5096 284 ISSPPLVTLLAKP 296 (757)
T ss_pred hhccHHHHHHcCC
Confidence 5555555554444
No 73
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=98.94 E-value=3.6e-05 Score=77.41 Aligned_cols=460 Identities=14% Similarity=0.112 Sum_probs=238.5
Q ss_pred hcChhHHHHHHHhhcHHHHHHhhChHhhhhcccccccc-ccCCchHHHHHHHHHHhcccccCCCccchhcchhHHHhhhc
Q 009632 18 LKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCT 96 (530)
Q Consensus 18 l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~ 96 (530)
+.+.+...|..|++.+-..+. .|.+ ...+.|-+.. +...|.|+++..-..+..+++.-+ +..-..++.+..-++
T Consensus 28 l~s~n~~~kidAmK~iIa~M~-~G~d--mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P--~~~lLavNti~kDl~ 102 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMS-LGED--MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKP--ELALLAVNTIQKDLQ 102 (757)
T ss_pred ccccChHHHHHHHHHHHHHHh-cCCC--hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCH--HHHHHHHHHHHhhcc
Confidence 677888889888887655432 2432 4455555444 557789999999888888877422 322334456666778
Q ss_pred ccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChHHHHH-HHHHHHhhcCCC
Q 009632 97 VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTE-LRSIYTQLCQDD 175 (530)
Q Consensus 97 d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~-l~~~l~~l~~d~ 175 (530)
|+++.+|..|++.++.+ ....+.+.+++.+.++.+++++.||..|+.++..+...-...+... ....+..++.|+
T Consensus 103 d~N~~iR~~AlR~ls~l----~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l~~D~ 178 (757)
T COG5096 103 DPNEEIRGFALRTLSLL----RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDILKELVADS 178 (757)
T ss_pred CCCHHHHHHHHHHHHhc----ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHHhhCC
Confidence 99999999999888776 5567778889999999999999999999999998887655555555 677777889999
Q ss_pred ChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhh-cCCc---hhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcC
Q 009632 176 MPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLT-QDDQ---DSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQ 251 (530)
Q Consensus 176 ~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~-~d~~---~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~ 251 (530)
+|.|-..|+.++..+-.-.. ..+...+...+.++. ...+ +-++..-.+.+.......+.+ ...+...+.....
T Consensus 179 dP~Vi~nAl~sl~~i~~e~a-~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~le~L~~~~~~~~~s--~~~~~~~~~~~~~ 255 (757)
T COG5096 179 DPIVIANALASLAEIDPELA-HGYSLEVILRIPQLDLLSLSVSTEWLLLIILEVLTERVPTTPDS--AEDFEERLSPPLQ 255 (757)
T ss_pred CchHHHHHHHHHHHhchhhh-hhHHHHHHHHhhhccchhhhhhHHHHHHHHHHHHHccCCCCCCc--HHHHHHhccchhh
Confidence 99999999888887755311 111111111111111 0111 223333233332222211111 0111111112233
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhc---
Q 009632 252 DKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELS--- 328 (530)
Q Consensus 252 d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~--- 328 (530)
..+..+-..+...+..+..............|.+..++..+ ++.....+.-...+.-..-+ .++.....+.
T Consensus 256 ~~n~~vl~~av~~i~~l~~~~~~~~~~~~~~~~l~~Ll~~~-~~~~~~vl~~~~~~~l~~~~-----k~~~~~~~~f~~~ 329 (757)
T COG5096 256 HNNAEVLLIAVKVILRLLVFLPSNNLFLISSPPLVTLLAKP-ESLIQYVLRRNIQIDLEVCS-----KLLDKVKKLFLIE 329 (757)
T ss_pred hCcHHHHHHHHHHHHHHhhhhccccHHHhhccHHHHHHcCC-HHHHHHHHHHhhHHHHHhhH-----HHHHHHhhhhhhh
Confidence 44555666666666665555544433344455555555544 33333333322222111111 1111111110
Q ss_pred cCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcC--CChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHh
Q 009632 329 SDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKD--EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA 406 (530)
Q Consensus 329 ~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~ 406 (530)
.+..-.+..........++.. ... .++++-+.....+ .++++-..++++++.+...... ....++..+.+++
T Consensus 330 ~~~~i~~~lek~~~~t~l~~~---~n~-~~~L~e~~~y~~~~~~~~e~v~~~ik~lgd~~sk~~s--~~~~~I~~~lel~ 403 (757)
T COG5096 330 YNDDIYIKLEKLDQLTRLADD---QNL-SQILLELIYYIAENHIDAEMVSEAIKALGDLASKAES--SVNDCISELLELL 403 (757)
T ss_pred ccchHHHHHHHHHHHhhcCCc---hhh-HHHHHHHHHHHhhccccHHHHHHHHHHHHhhhhhhhh--hHHHHHHHHHHhc
Confidence 011112222222222222211 111 1244555555555 5667777777888777655421 1234555555555
Q ss_pred cCCChHHHHHHHHHHH-------------HHHhhhChhhHHHHHHHHHH---HHhc--CCcHHHHHHH-----HHHHHHH
Q 009632 407 EDRHWRVRLAIIEYIP-------------LLASQLGVGFFDDKLGALCM---QWLQ--DKVYSIRDAA-----ANNLKRL 463 (530)
Q Consensus 407 ~~~~~~~R~~~~~~l~-------------~l~~~~~~~~~~~~~~~~l~---~~l~--d~~~~Vr~~a-----~~~l~~l 463 (530)
.. -| .|...+.... .....+..+ ..+.+.+.+. ..+. +..+.++..+ +..+|++
T Consensus 404 ~g-~~-~~~~Yi~~e~~~~~~i~v~r~~~~~lr~l~~~-~~~~~~~~l~~~~e~l~~~~~~P~~k~~~~~~~~~wl~ge~ 480 (757)
T COG5096 404 EG-VW-IRGSYIVQEVRIVDCISVIRISVLVLRILPNE-YPKILLRGLYALEETLELQSREPRAKSVTDKYLGAWLLGEF 480 (757)
T ss_pred cc-hh-hccchhhhhhcccceeeeeehhcchhhhcCCc-chhhhHHHHHHHHHHhhccccCcHHHHHHhhhhHHHhHHHH
Confidence 51 11 2222222221 111111111 1112223322 2232 3356777777 6677776
Q ss_pred HHHhChhHHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhc
Q 009632 464 AEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVM 506 (530)
Q Consensus 464 ~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~ 506 (530)
....... .+.++.......-++...++......-.++.-..
T Consensus 481 ~~~i~r~--~~~~l~~~~~~~~~E~levq~~Il~~svkl~~~~ 521 (757)
T COG5096 481 SDIIPRL--EPELLRIAISNFVDETLEVQYTILMSSVKLIANS 521 (757)
T ss_pred HHHHhhh--hHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhC
Confidence 6544211 1234444444556777777777766666654433
No 74
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.92 E-value=3.1e-06 Score=78.28 Aligned_cols=461 Identities=13% Similarity=0.077 Sum_probs=250.7
Q ss_pred HhcChhHHHHHHHhhcHHHHHHhhChHhh---hhcc--------cccccc--ccCCchHHHHHHHHHHhcccc-------
Q 009632 17 ELKNDDIQLRLNSIRRLSTIARALGEERT---RKEL--------IPFLSE--NNDDDDEVLLAMAEELGVFIP------- 76 (530)
Q Consensus 17 ~l~~~~~~~R~~a~~~l~~~~~~~~~~~~---~~~l--------~~~l~~--~~d~~~~vr~~~~~~l~~~~~------- 76 (530)
++++.....|..|+..+......+..... |..+ -|.++. +.|+++..|.-+-+.+..+..
T Consensus 4 ~~r~~~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls 83 (728)
T KOG4535|consen 4 KMRSYQAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLS 83 (728)
T ss_pred chhhHHHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHH
Confidence 46778888999998888777655432221 2222 344444 778888888766555443322
Q ss_pred ---cCCCccchhc-------chh----HHHhhhcccchHHHHHHHHHHHHHHhhcChhhhh----hhHHHHHHHHhcCCc
Q 009632 77 ---YVGGVEHAHV-------LLP----PLETLCTVEETCVRDKAVESLCRIGSQMRESDLV----DWYIPLVKRLAAGEW 138 (530)
Q Consensus 77 ---~~~~~~~~~~-------l~~----~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~----~~l~~~l~~l~~~~~ 138 (530)
..|..++.+. +.. ++..+..+..+.+--..++|+..++..-+-+.++ ..+..-++.+++..+
T Consensus 84 ~a~~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d 163 (728)
T KOG4535|consen 84 VAEDTSDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKD 163 (728)
T ss_pred HHhccCCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCC
Confidence 2232222211 111 1233445556777778889999998876654432 335566677778888
Q ss_pred cchhHHHHhHhhhhcCCC-------------------------ChHHHHHHH--HHHHhh--------------------
Q 009632 139 FTARVSACGLFHIAYPSA-------------------------PDILKTELR--SIYTQL-------------------- 171 (530)
Q Consensus 139 ~~~r~~~~~~l~~l~~~~-------------------------~~~~~~~l~--~~l~~l-------------------- 171 (530)
+.+|.++...++.+.... +++.++++- +...++
T Consensus 164 ~~v~vs~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~ 243 (728)
T KOG4535|consen 164 VNVRVSSLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCIS 243 (728)
T ss_pred CChhhHHHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeee
Confidence 899998888877654311 011111110 001110
Q ss_pred ------------------cCC--CChhHHHHHHHHHHHHHhhhcc-hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHh
Q 009632 172 ------------------CQD--DMPMVRRSAASNLGKFAATVEP-AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALG 230 (530)
Q Consensus 172 ------------------~~d--~~~~vR~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~ 230 (530)
... .-..+|-.+.+.+..++.+++- ..+.-++...+...+.+..+.++..+...+..++
T Consensus 244 i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg 323 (728)
T KOG4535|consen 244 IVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELG 323 (728)
T ss_pred eeecCCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHH
Confidence 000 1135788888888888877664 2233345555566678888999999999998888
Q ss_pred hhcCc----hhhhhccH-HHHHH-hc--------CC-CCHHHHHHHHHHHHHHHHHh--CCcccccchHHHHHHhcCCCc
Q 009632 231 KLLEP----QDCVAHIL-PVIVN-FS--------QD-KSWRVRYMVANQLYELCEAV--GPEPTRMDLVPAYVRLLRDNE 293 (530)
Q Consensus 231 ~~~~~----~~~~~~~~-~~l~~-~~--------~d-~~~~vr~~~~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~d~~ 293 (530)
..++. +.....+. ..+.. +. -| .......+.|..+..+.... +-........+.|+..+.|.+
T Consensus 324 ~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~ 403 (728)
T KOG4535|consen 324 TGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSK 403 (728)
T ss_pred HHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchH
Confidence 77652 11111111 10111 11 11 22334556666666665432 112223467788888888655
Q ss_pred H-HHHHHHHHHHHHHHHhhCHH---HHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcC
Q 009632 294 A-EVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKD 369 (530)
Q Consensus 294 ~-~vr~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d 369 (530)
. -|+.+|+++++...-.-+.. .+.......+...+.|+...+|..++..++.+. ..|-+
T Consensus 404 ~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnIT-----------------dAL~~ 466 (728)
T KOG4535|consen 404 NRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNIT-----------------DALIV 466 (728)
T ss_pred HHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhH-----------------HHHHc
Confidence 3 46667776665443222211 111222223333344555555555444443332 23334
Q ss_pred CChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChh--h-HH----HHHHHHHH
Q 009632 370 EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--F-FD----DKLGALCM 442 (530)
Q Consensus 370 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~--~-~~----~~~~~~l~ 442 (530)
+.+.+|..+....+.+.... +. ......-.++++|..++++++++.+.+.+- . +. ..+...+.
T Consensus 467 ~~Ps~~s~~eR~sg~ll~~~---------~~-~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~ 536 (728)
T KOG4535|consen 467 NMPTPDSFQERFSGLLLLKM---------LR-SAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALIS 536 (728)
T ss_pred CCCCchHHHHHHHHHHHHHH---------HH-HHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhccc
Confidence 44555555555444432210 10 111123346788999999998888766521 1 11 11222222
Q ss_pred HHhcCCcHHHHHHHHHHHHHHHHHhCh-----hHHhhhhHHHHHhhccC-CChHHHHHHHHHHHHHhhh
Q 009632 443 QWLQDKVYSIRDAAANNLKRLAEEFGP-----EWAMQHITPQVLEMINN-PHYLYRMTILRAISLLAPV 505 (530)
Q Consensus 443 ~~l~d~~~~Vr~~a~~~l~~l~~~~~~-----~~~~~~i~~~l~~~~~d-~~~~vr~~a~~~l~~i~~~ 505 (530)
.........||-++|.++|.+++.-.- +|. ..+.+.+..++.+ .|..||..|..++....+-
T Consensus 537 ~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA-~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~r 604 (728)
T KOG4535|consen 537 TVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWA-SQAFNALTSLVTSCKNFKVRIRAAAALSVPGKR 604 (728)
T ss_pred ceecccccccchHHHHHHHHhhcCccccccCCCch-HHHHHHHHHHHHHhccceEeehhhhhhcCCCCc
Confidence 222334567999999999999875322 222 4567777777654 7899999988888765543
No 75
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.89 E-value=3.4e-05 Score=81.24 Aligned_cols=132 Identities=11% Similarity=0.030 Sum_probs=80.6
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhh-HHHHHHHHHHHH-------hcCC----cHHHHHHHHHHHHHH
Q 009632 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF-FDDKLGALCMQW-------LQDK----VYSIRDAAANNLKRL 463 (530)
Q Consensus 396 ~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~-~~~~~~~~l~~~-------l~d~----~~~Vr~~a~~~l~~l 463 (530)
..+-..|...+-.-+...-..++.|++.++......+ +...++..+.+. ..+. ....-...+-++|.+
T Consensus 1120 ~sLEe~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l 1199 (1692)
T KOG1020|consen 1120 ASLEEDLLKRIVKMGMATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLL 1199 (1692)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHH
Confidence 3344444444445566677778888888887643222 122222222222 2223 224455677788888
Q ss_pred HHHhC--------hh------HHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcChHHHHhhHHHHHHhhccCCC
Q 009632 464 AEEFG--------PE------WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRY 527 (530)
Q Consensus 464 ~~~~~--------~~------~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~p~l~~~l~D~~ 527 (530)
++++. +. ...+.++.+|.-+.++.+-.+|..|+.++|.++..-+.-+..+++...+...+.|..
T Consensus 1200 ~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp~l~~~~~v~nly~~ila~~n 1277 (1692)
T KOG1020|consen 1200 SRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQHPSLFTSREVLNLYDEILADDN 1277 (1692)
T ss_pred HHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCchhhhhHHHHHHHHHHHhhhc
Confidence 88652 11 223566667777778888999999999999999877766666666666666555543
No 76
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=98.89 E-value=5.7e-07 Score=91.55 Aligned_cols=192 Identities=15% Similarity=0.182 Sum_probs=155.7
Q ss_pred HHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccC---HHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh
Q 009632 316 AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG---KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 392 (530)
Q Consensus 316 ~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 392 (530)
..+.+-+.+...+.+++|.-|..+++.+....+.-+ ...+...+...+-..+.|.+..|-..++..+..++..++..
T Consensus 250 i~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~ 329 (815)
T KOG1820|consen 250 ILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPL 329 (815)
T ss_pred hhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchh
Confidence 345566666666778999999999988877765544 22344556666667788999999999999999999887754
Q ss_pred --HHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh
Q 009632 393 --LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE 470 (530)
Q Consensus 393 --~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~ 470 (530)
.+...++|.+.+.+.+....+|..+..++..++...+ ...+.+.+..+++++.+++|......+....+..++.
T Consensus 330 ~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~----l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~ 405 (815)
T KOG1820|consen 330 FRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP----LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPK 405 (815)
T ss_pred hHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc----HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCc
Confidence 3456788999999999999999999999988877333 4568889999999999999999999999988888732
Q ss_pred ----HHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcChHHH
Q 009632 471 ----WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT 511 (530)
Q Consensus 471 ----~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~~~~ 511 (530)
.....++|.+....+|.+.+||.++..+++.+...+|.+.+
T Consensus 406 ~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~ 450 (815)
T KOG1820|consen 406 TVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVF 450 (815)
T ss_pred CcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHH
Confidence 22367899999999999999999999999999999997654
No 77
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=1.4e-05 Score=78.66 Aligned_cols=471 Identities=12% Similarity=0.095 Sum_probs=258.7
Q ss_pred HhhcHHHHH------HhhChHhhhhccccccccccCCchHHHHHHHHHHhcccccCCCccchhcchhHHHhhhcccchHH
Q 009632 29 SIRRLSTIA------RALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCV 102 (530)
Q Consensus 29 a~~~l~~~~------~~~~~~~~~~~l~~~l~~~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~v 102 (530)
+...|.++. ++++.....+.+.....-.+..++..|+.....++.+...- .+ ...+..-+..-.+-.++.+
T Consensus 40 c~~~lskllyll~qge~~~~~eate~ff~~tKlfQskd~~LRr~vYl~Ikels~is--ed-viivtsslmkD~t~~~d~y 116 (865)
T KOG1078|consen 40 CRHILSKLLYLLNQGEHFGETEATELFFAITKLFQSKDVSLRRMVYLAIKELSKIS--ED-VIIVTSSLMKDMTGKEDLY 116 (865)
T ss_pred HHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHhhcCHHHHHHHHHHHhhccccc--hh-hhhhhHHHHhhccCCCcch
Confidence 344455543 44444333344444433355677788888888877775521 12 2222233333345567788
Q ss_pred HHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcCCCChhHHHH
Q 009632 103 RDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRS 182 (530)
Q Consensus 103 R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~ 182 (530)
|-.|+.+|..+... .....+...+.+..-+....++..+.----.+.+ ..++......+...+...+.+--+++.
T Consensus 117 r~~AiR~L~~I~d~----~m~~~iery~kqaivd~~~avSsaalvss~hll~-~~~~~vkrw~neiqea~~s~~~m~QyH 191 (865)
T KOG1078|consen 117 RAAAIRALCSIIDG----TMLQAIERYMKQAIVDKNPAVSSAALVSSYHLLP-ISFDVVKRWANEVQEAVNSDNIMVQYH 191 (865)
T ss_pred hHHHHHHHHhhcCc----chhHHHHHHHHhHeeccccccchHHHHHHhhhhc-ccHHHHHHHHHhhhhccCcHHHHHHHH
Confidence 88888877777432 2223355666666667766665543221111121 222333333334444444444456666
Q ss_pred HHHHHHHHHhhhcchhhHHHHHHHHHH-hhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcCCCCHHHHHHH
Q 009632 183 AASNLGKFAATVEPAHLKTDIMSIFED-LTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMV 261 (530)
Q Consensus 183 a~~~l~~l~~~~~~~~~~~~l~~~l~~-~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~ 261 (530)
+...+..+-+.- ......++..+.+ .+.++- -+..-+.......... ......+.|.+...+.++...|-..+
T Consensus 192 alglLyqirk~d--rla~sklv~~~~~~~~~~~~--A~~~lir~~~~~l~~~--~~~~s~~~~fl~s~l~~K~emV~~Ea 265 (865)
T KOG1078|consen 192 ALGLLYQIRKND--RLAVSKLVQKFTRGSLKSPL--AVCMLIRIASELLKEN--QQADSPLFPFLESCLRHKSEMVIYEA 265 (865)
T ss_pred HHHHHHHHHhhh--HHHHHHHHHHHccccccchh--HHHHHHHHHHHHhhhc--ccchhhHHHHHHHHHhchhHHHHHHH
Confidence 655555543310 1111222222211 111111 1111111111111111 22345688888999999999898888
Q ss_pred HHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHH
Q 009632 262 ANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALAS 341 (530)
Q Consensus 262 ~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~ 341 (530)
+.++..+....+.+.. .-+..+.-++..+.+-.|-+|...|..++-..+... ...-.-+..++.|.+..+-.-++.
T Consensus 266 Arai~~l~~~~~r~l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v--~~cN~elE~lItd~NrsIat~AIT 341 (865)
T KOG1078|consen 266 ARAIVSLPNTNSRELA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAV--TVCNLDLESLITDSNRSIATLAIT 341 (865)
T ss_pred HHHHhhccccCHhhcc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccc--cccchhHHhhhcccccchhHHHHH
Confidence 8888777655444332 245666777889999999999999999987654331 122333455667777666555554
Q ss_pred HHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcC-CChHHHHHHHHH
Q 009632 342 VIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED-RHWRVRLAIIEY 420 (530)
Q Consensus 342 ~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~-~~~~~R~~~~~~ 420 (530)
.+-.- |.+.....++..+-....|-+.+.+..+++++..++..+...+ ..+++.|.+++.+ ..+..+.+.+.+
T Consensus 342 tLLKT----G~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~--~~~m~FL~~~Lr~eGg~e~K~aivd~ 415 (865)
T KOG1078|consen 342 TLLKT----GTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKH--TVMMNFLSNMLREEGGFEFKRAIVDA 415 (865)
T ss_pred HHHHh----cchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHH--HHHHHHHHHHHHhccCchHHHHHHHH
Confidence 44433 3344444454445555544444445555555666666665443 3566666666544 467888888888
Q ss_pred HHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhccCCChHHHHHHHHHHH
Q 009632 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAIS 500 (530)
Q Consensus 421 l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~ 500 (530)
+..+....... ....+..+...+.|.. .+.-+...++.+.+-..........+..+.+..-=.|..||.+|..++.
T Consensus 416 Ii~iie~~pds--Ke~~L~~LCefIEDce--~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~ala 491 (865)
T KOG1078|consen 416 IIDIIEENPDS--KERGLEHLCEFIEDCE--FTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALA 491 (865)
T ss_pred HHHHHHhCcch--hhHHHHHHHHHHHhcc--chHHHHHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHH
Confidence 88877643311 1223334444444533 2445555555554433222222344555555555568899999999999
Q ss_pred HHhhhcChHHHHhhHHHHHHhhccCCCCC
Q 009632 501 LLAPVMGSEITCSRLLPVVINASKDRYLN 529 (530)
Q Consensus 501 ~i~~~~~~~~~~~~~~p~l~~~l~D~~~~ 529 (530)
++. .+.+...+.+.-.+++++.|+...
T Consensus 492 Kfg--~~~~~l~~sI~vllkRc~~D~Dde 518 (865)
T KOG1078|consen 492 KFG--AQDVVLLPSILVLLKRCLNDSDDE 518 (865)
T ss_pred HHh--cCCCCccccHHHHHHHHhcCchHH
Confidence 998 445556677888899999987653
No 78
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.86 E-value=3.7e-05 Score=74.79 Aligned_cols=201 Identities=13% Similarity=0.148 Sum_probs=130.0
Q ss_pred HHHHHHHhCCcccc---cchHHHHHHhc-CCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhc-cCCcHHHHHHH
Q 009632 265 LYELCEAVGPEPTR---MDLVPAYVRLL-RDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELS-SDSSQHVRSAL 339 (530)
Q Consensus 265 l~~l~~~~~~~~~~---~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~-~d~~~~vr~~~ 339 (530)
+..+...+.++... ..++..+.... ..+++..|..+++.+..+...+..+...+.++..+.... .......|..+
T Consensus 171 ~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 250 (415)
T PF12460_consen 171 FSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQA 250 (415)
T ss_pred HHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHH
Confidence 34444444444332 23455555543 344588999999999999998765544445555554433 34445566666
Q ss_pred HHHHHhhcccc--CHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhc---------------hhHHHhhHHHHH
Q 009632 340 ASVIMGMAPLL--GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---------------IDLLSQSLLPAI 402 (530)
Q Consensus 340 ~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---------------~~~~~~~l~~~l 402 (530)
++.+..+.+.+ ........++..+..++.| +.+...++++++.+..... ...+...++|.+
T Consensus 251 ~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L 328 (415)
T PF12460_consen 251 LEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKL 328 (415)
T ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHH
Confidence 66666665433 1123345666777788887 7788888888888765421 123335667777
Q ss_pred HHHhcCCChHHHHHHHHHHHHHHhhhChhhHH---HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh
Q 009632 403 VELAEDRHWRVRLAIIEYIPLLASQLGVGFFD---DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF 467 (530)
Q Consensus 403 ~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~---~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~ 467 (530)
.+..++.+...|..++.+++.+.+..+...+. +.++|.+++.+.-++..|+.+++.++..+...-
T Consensus 329 ~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 329 LEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 77777666667888888888888877766543 457888888887777778888888887777654
No 79
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=9.6e-06 Score=80.07 Aligned_cols=437 Identities=11% Similarity=0.061 Sum_probs=245.9
Q ss_pred ccccccccccCCchHHHHHHHHHHhcccccCCCccchhcchhHHHhhhccc-chHHHHHHHHHHHHHHh-hcChh-----
Q 009632 48 ELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVE-ETCVRDKAVESLCRIGS-QMRES----- 120 (530)
Q Consensus 48 ~l~~~l~~~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~-~~~vR~~a~~~l~~l~~-~~~~~----- 120 (530)
.+..++.+.-+++|.+|+.+.++|..+... ..+...++.++ .++. +..+|.+|.-.+++-++ .|.+.
T Consensus 6 ~l~~~l~qTl~pdps~rk~aEr~L~~~e~q---~~y~l~lL~Lv---~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~ 79 (960)
T KOG1992|consen 6 TLANYLLQTLSPDPSVRKPAERALRSLEGQ---QNYPLLLLNLV---ANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPI 79 (960)
T ss_pred HHHHHHHhcCCCCCccCchHHHHHHHhccC---CCchHHHHHHH---hccCcChhHHHHHHHHHHHHHHhccCcCCCCcc
Confidence 344455566678899999999988776431 23333443333 3443 78999999999999888 45431
Q ss_pred ----hhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc
Q 009632 121 ----DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP 196 (530)
Q Consensus 121 ----~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~ 196 (530)
.....+-..+..++-+....++......++.+...--++.++.++|-+..-++..+-.+-.++...--.+.+....
T Consensus 80 ~i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~ 159 (960)
T KOG1992|consen 80 KIIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRP 159 (960)
T ss_pred ccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCc
Confidence 1223345555555555555677777777777777777788999999999888877777766666666667766654
Q ss_pred hhhHH-------H--------HHHHHHH---hh--cCCchhHHHHHHHHHHHHhhhc--------Cc--hhhhhccHHHH
Q 009632 197 AHLKT-------D--------IMSIFED---LT--QDDQDSVRLLAVEGCAALGKLL--------EP--QDCVAHILPVI 246 (530)
Q Consensus 197 ~~~~~-------~--------l~~~l~~---~~--~d~~~~vr~~a~~~l~~l~~~~--------~~--~~~~~~~~~~l 246 (530)
+...+ . +..++.+ ++ .+++...-..-...+--+++.+ ++ ++..+..++.+
T Consensus 160 efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F 239 (960)
T KOG1992|consen 160 EFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAF 239 (960)
T ss_pred ccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHH
Confidence 32111 1 1112221 12 1122111111111111112211 11 22233345555
Q ss_pred HHhcC-------C-C-C----HHHHHHHHHHHHHHHHHhCCccc--ccchHHHHHHhcCCCcH-----HHHHHHHHHHHH
Q 009632 247 VNFSQ-------D-K-S----WRVRYMVANQLYELCEAVGPEPT--RMDLVPAYVRLLRDNEA-----EVRIAAAGKVTK 306 (530)
Q Consensus 247 ~~~~~-------d-~-~----~~vr~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~-----~vr~~a~~~l~~ 306 (530)
.+++. + . + ..+|...|+.+.-.+....+++. ...++...-.++.+..+ .....|++-|..
T Consensus 240 ~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~ 319 (960)
T KOG1992|consen 240 HKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFLTS 319 (960)
T ss_pred HHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 55443 1 1 1 25677888877776665544431 22333333344443332 334455555555
Q ss_pred HHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHH--hhcccc-CHHHHHHhHHHHHHHhhcCCCh-HHHHHHHHhh
Q 009632 307 FCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIM--GMAPLL-GKDATIEQLLPIFLSLLKDEFP-DVRLNIISKL 382 (530)
Q Consensus 307 ~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~--~l~~~~-~~~~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l 382 (530)
+++.-... ..+ .+..+-..+++.+. .+.-.- ..+-|.+.-+.++-+-++-.+. .-|..|++.+
T Consensus 320 V~~r~~y~-------~~F------~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlv 386 (960)
T KOG1992|consen 320 VSRRPHYA-------ELF------EGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLV 386 (960)
T ss_pred HHhhhhhH-------hhh------cchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHH
Confidence 54421111 000 01122222222211 111111 1233444456666666664443 4577888999
Q ss_pred HHhhhhhchhHHH----hhHHHHHHHHhcCC--ChHHHHHHHHHHHHHHhhhC---------------hhhHHHHHHHHH
Q 009632 383 DQVNQVIGIDLLS----QSLLPAIVELAEDR--HWRVRLAIIEYIPLLASQLG---------------VGFFDDKLGALC 441 (530)
Q Consensus 383 ~~l~~~~~~~~~~----~~l~~~l~~~~~~~--~~~~R~~~~~~l~~l~~~~~---------------~~~~~~~~~~~l 441 (530)
+.+++.+.. ++. ..+-..+.++.+++ +|.-...++..+..++...+ .++|...+.|.+
T Consensus 387 rgL~~~fe~-~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L 465 (960)
T KOG1992|consen 387 RGLCKNFEG-QVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDL 465 (960)
T ss_pred HHHHHHhcc-hhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHh
Confidence 999988742 221 12222233344554 79999999999988876521 355667777777
Q ss_pred HHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhh
Q 009632 442 MQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPV 505 (530)
Q Consensus 442 ~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~ 505 (530)
..-=....+-+|..+++-+-.+-...|+. ....++|.+.+.+..+...|...|+.++.++...
T Consensus 466 ~s~~vn~~pilka~aIKy~~~FR~ql~~~-~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~v 528 (960)
T KOG1992|consen 466 LSPNVNEFPILKADAIKYIYTFRNQLGKE-HLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTV 528 (960)
T ss_pred ccCccccccchhhcccceeeeecccCChH-HHHHHHHHHHHhccCcchHHHHHHHHHHHhcccc
Confidence 65333566778888887765555556655 3467899999999999999999999999987543
No 80
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=2.3e-05 Score=76.69 Aligned_cols=434 Identities=15% Similarity=0.144 Sum_probs=219.7
Q ss_pred HHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhcccccccc-ccCCchHHHHHHHHHHhcccccCCCccch-hcc--
Q 009632 12 AVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHA-HVL-- 87 (530)
Q Consensus 12 ~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~~~~~-~~l-- 87 (530)
..+.+.|.+++...+..|++.+-.+ .+..++....++-.++- +-..+-+..+.....+.-+-+.-++.... +.+
T Consensus 23 ~~ik~~Lek~~~~~KIeamK~ii~~--mlnGe~~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EMILv 100 (948)
T KOG1058|consen 23 DEIKEKLEKGDDEVKIEAMKKIIAL--MLNGEDLPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEMILV 100 (948)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHH--HHcCCCchHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCcccHHHHHHH
Confidence 4678889999999998888765443 23334443333333333 44556666666665554443333312222 222
Q ss_pred hhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChH--HHHHHH
Q 009632 88 LPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI--LKTELR 165 (530)
Q Consensus 88 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~--~~~~l~ 165 (530)
...+..-+++++..+|-..++-+.++ .+..+.+-++|.+....+.....||..|..++..++.....- -.++++
T Consensus 101 cna~RkDLQHPNEyiRG~TLRFLckL----kE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pDapeLi 176 (948)
T KOG1058|consen 101 CNAYRKDLQHPNEYIRGSTLRFLCKL----KEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAPELI 176 (948)
T ss_pred HHHHhhhccCchHhhcchhhhhhhhc----CcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCChHHHH
Confidence 23345556788888888766444433 444455556777777777777777777777776666552211 112222
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHH
Q 009632 166 SIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPV 245 (530)
Q Consensus 166 ~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ 245 (530)
.-+ +..+.++..++.|.-.|-.. .++....++..-+.+. .+-++..+..-++.+...+..-+. .....+.+
T Consensus 177 ~~f--L~~e~DpsCkRNAFi~L~~~----D~ErAl~Yl~~~idqi-~~~~~~LqlViVE~Irkv~~~~p~--~~~~~i~~ 247 (948)
T KOG1058|consen 177 ESF--LLTEQDPSCKRNAFLMLFTT----DPERALNYLLSNIDQI-PSFNDSLQLVIVELIRKVCLANPA--EKARYIRC 247 (948)
T ss_pred HHH--HHhccCchhHHHHHHHHHhc----CHHHHHHHHHhhHhhc-cCccHHHHHHHHHHHHHHHhcCHH--HhhHHHHH
Confidence 222 23355566666554433221 2222222221111111 111223333333333333321111 12234444
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHh
Q 009632 246 IVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVK 325 (530)
Q Consensus 246 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~ 325 (530)
+..+++..++.|+..++.++..+ .++|..-++|+.++-.+....
T Consensus 248 i~~lL~stssaV~fEaa~tlv~l----------------------S~~p~alk~Aa~~~i~l~~ke-------------- 291 (948)
T KOG1058|consen 248 IYNLLSSTSSAVIFEAAGTLVTL----------------------SNDPTALKAAASTYIDLLVKE-------------- 291 (948)
T ss_pred HHHHHhcCCchhhhhhcceEEEc----------------------cCCHHHHHHHHHHHHHHHHhc--------------
Confidence 44444444444544443322222 122333334433333333221
Q ss_pred HhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHH
Q 009632 326 ELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL 405 (530)
Q Consensus 326 ~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~ 405 (530)
++-+++.-...-+..+. .+.+.....+.--++.+|..++-+||..+++..-.+...-..+.+.+.+-..+.+-
T Consensus 292 -----sdnnvklIvldrl~~l~--~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT 364 (948)
T KOG1058|consen 292 -----SDNNVKLIVLDRLSELK--ALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKT 364 (948)
T ss_pred -----cCcchhhhhHHHHHHHh--hhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhc
Confidence 11123322222233332 11233344444556778888899999998887666554433333322222222222
Q ss_pred ---hcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHh
Q 009632 406 ---AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLE 482 (530)
Q Consensus 406 ---~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~ 482 (530)
-++.+...|+..++++...+-.+.. +...++|.++..+.|.+..--...+..+....+.+.. ....++..+..
T Consensus 365 ~~~e~d~~~~yRqlLiktih~cav~Fp~--~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~--Lr~~ii~~l~~ 440 (948)
T KOG1058|consen 365 HNEESDDNGKYRQLLIKTIHACAVKFPE--VAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPN--LRASIIEKLLE 440 (948)
T ss_pred cccccccchHHHHHHHHHHHHHhhcChH--HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCch--HHHHHHHHHHH
Confidence 1334567899999999888765553 4567899999999998876555555555555555432 22344444444
Q ss_pred hcc-CCChHHHHHHHHHHHHHhhhcC
Q 009632 483 MIN-NPHYLYRMTILRAISLLAPVMG 507 (530)
Q Consensus 483 ~~~-d~~~~vr~~a~~~l~~i~~~~~ 507 (530)
.+. =.+...-.+++|.+|..++..+
T Consensus 441 ~~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 441 TFPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred hhhhhcccccchhHHHHHHHHHhhhH
Confidence 332 2344555678888888776544
No 81
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=98.81 E-value=2.7e-06 Score=86.75 Aligned_cols=336 Identities=11% Similarity=0.042 Sum_probs=216.2
Q ss_pred HHHHHHHHhcCCccchhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhH-HHHH
Q 009632 126 YIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLK-TDIM 204 (530)
Q Consensus 126 l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~-~~l~ 204 (530)
+.+.....+..+....|.........+. ..+..++....+..+..-..+..-..++..+..+....+.+... ..++
T Consensus 64 l~~~~~~~l~~~~~~~~~~~~~~~~~i~---~~~~~~~~~e~~~~~~~~k~pk~~~~~~~~~~~lv~~~g~p~~~~~~~~ 140 (815)
T KOG1820|consen 64 LLSFGLKCLDSKRVNIRDTKTQSLLRIG---KLEDIKEVVEAAKALLSFKSPKKIAAAVAAVLSLVEEFGKPKVPSKAFI 140 (815)
T ss_pred eccchhhhcccccccccCcchhHHHHHH---HhhhhHHHHHHHHhhccccCchhHHHHHHHHHHHHHHhcCCCCcccccc
Confidence 4444444444443344443333333330 11234455566666666677777777777777777665553222 2223
Q ss_pred HHHHHhhcCCchhHHHHHHHHHHHHhhhcCchh--------------------------hhhccHHHHHHh---cCCCCH
Q 009632 205 SIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD--------------------------CVAHILPVIVNF---SQDKSW 255 (530)
Q Consensus 205 ~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--------------------------~~~~~~~~l~~~---~~d~~~ 255 (530)
+.+-++. +..||..+...+..+.+..|... +...--+..... ..+++|
T Consensus 141 ~~~~~l~---D~nvr~~~~~l~v~i~r~~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 217 (815)
T KOG1820|consen 141 KHVGSLA---DKNVRSEASKLLVEIYRWTGDASKPLLFKASAPGLMGKLGSYQGKSMMSFFNEKRPLLKSQPQDESDPNV 217 (815)
T ss_pred ccCcccc---ccccchhhcccchhhhhhcCCCcCcccchhhhHHHHHHHHhhccccccccccccccccccccccccCCCh
Confidence 3223333 34567777666666665554321 000001111111 112222
Q ss_pred HHHHHHHHHHHHHHH-----------HhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC--HH-HHHhhhh
Q 009632 256 RVRYMVANQLYELCE-----------AVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN--PE-LAIQHIL 321 (530)
Q Consensus 256 ~vr~~~~~~l~~l~~-----------~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~--~~-~~~~~l~ 321 (530)
.-+...-....+... .+.+......+.+.+...+.+++|--|..|+..+...++.-+ .. .....+.
T Consensus 218 ~e~~~~~~~~~~~~~~~~~s~~d~~d~l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~ 297 (815)
T KOG1820|consen 218 KEQLEKPERGLQRSKSGFTSPIDNFDLLPRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLG 297 (815)
T ss_pred hhcccccccccccccCCCCCCccccccCchhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHH
Confidence 222111111111100 011112245677888888899999999999999998887655 11 2234445
Q ss_pred HhHhHhccCCcHHHHHHHHHHHHhhccccCHH--HHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHH
Q 009632 322 PCVKELSSDSSQHVRSALASVIMGMAPLLGKD--ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL 399 (530)
Q Consensus 322 ~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~ 399 (530)
..+.....|.|-.+...++..+..++..++.. .+...+.|.++..++|....+|..+..++..+++.... ..+.
T Consensus 298 ~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l----~~~~ 373 (815)
T KOG1820|consen 298 ILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL----SKMS 373 (815)
T ss_pred HHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH----HHHH
Confidence 55556678999999999999999999988764 35677899999999999999999999999998874442 4677
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHhhhChh----hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhH
Q 009632 400 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVG----FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW 471 (530)
Q Consensus 400 ~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~----~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~ 471 (530)
+.+...+++.+++.|.....++.......++. .....+.|.+....+|...+||.+|.++++.+.+.+|...
T Consensus 374 ~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~ 449 (815)
T KOG1820|consen 374 EAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEV 449 (815)
T ss_pred HHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHH
Confidence 78888899999999999999999888887732 2346789999999999999999999999999999999663
No 82
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.80 E-value=1.7e-05 Score=77.20 Aligned_cols=288 Identities=14% Similarity=0.125 Sum_probs=171.6
Q ss_pred chHHHHHHHHHHHHHHhhcChhh--------hhhhHHHHHHHHhcCC-----c--cchhHHHHhHhhhhcCCCChHHHHH
Q 009632 99 ETCVRDKAVESLCRIGSQMRESD--------LVDWYIPLVKRLAAGE-----W--FTARVSACGLFHIAYPSAPDILKTE 163 (530)
Q Consensus 99 ~~~vR~~a~~~l~~l~~~~~~~~--------~~~~l~~~l~~l~~~~-----~--~~~r~~~~~~l~~l~~~~~~~~~~~ 163 (530)
+.......+.++..+.+...... ....++|.+..+.... + +.+-..+..++..+...++.+.++.
T Consensus 56 ~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~ 135 (415)
T PF12460_consen 56 SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE 135 (415)
T ss_pred ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 56667777888888776543322 1122555555554221 1 2344456777888888888876666
Q ss_pred HHHHHHhhcC----------CCC--hhHHHHHHHHHHHHHhhhcchhh---HHHHHHHHHHhhcC-CchhHHHHHHHHHH
Q 009632 164 LRSIYTQLCQ----------DDM--PMVRRSAASNLGKFAATVEPAHL---KTDIMSIFEDLTQD-DQDSVRLLAVEGCA 227 (530)
Q Consensus 164 l~~~l~~l~~----------d~~--~~vR~~a~~~l~~l~~~~~~~~~---~~~l~~~l~~~~~d-~~~~vr~~a~~~l~ 227 (530)
+...+..+.. +.+ +.........+..+...++++.. ...++..+.++... +++..|..+.+.++
T Consensus 136 ~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la 215 (415)
T PF12460_consen 136 ILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLA 215 (415)
T ss_pred HHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 6655554332 111 12334444455555556666433 23455666665444 35789999999999
Q ss_pred HHhhhcCchhhhhccHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHh--CCcccccchHHHHHHhcCCCcHHHHHHHHHHH
Q 009632 228 ALGKLLEPQDCVAHILPVIVNFS-QDKSWRVRYMVANQLYELCEAV--GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 304 (530)
Q Consensus 228 ~l~~~~~~~~~~~~~~~~l~~~~-~d~~~~vr~~~~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l 304 (530)
.+...+++......++..+.... .......|..+...+.-+.+++ ........++..+.+++.| +++...+++++
T Consensus 216 ~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f 293 (415)
T PF12460_consen 216 SLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAF 293 (415)
T ss_pred HHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHH
Confidence 99999876554455555554444 3444556666666666666654 2222345678888888888 67889999999
Q ss_pred HHHHHhhCH---------------HHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHH---HHhHHHHHHHh
Q 009632 305 TKFCRILNP---------------ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDAT---IEQLLPIFLSL 366 (530)
Q Consensus 305 ~~~~~~~~~---------------~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~---~~~l~~~l~~~ 366 (530)
+.+....+. +.+-..++|.+.+..++.+...|.....++..+.+..+...+ .+.++|.+++.
T Consensus 294 ~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqs 373 (415)
T PF12460_consen 294 GILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQS 373 (415)
T ss_pred hhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Confidence 988765211 122244455555444444444566666666666665554332 34566666666
Q ss_pred hcCCChHHHHHHHHhhHHhhhh
Q 009632 367 LKDEFPDVRLNIISKLDQVNQV 388 (530)
Q Consensus 367 l~d~~~~vr~~a~~~l~~l~~~ 388 (530)
|.-++..++..++.++..+...
T Consensus 374 L~~~~~~v~~s~L~tL~~~l~~ 395 (415)
T PF12460_consen 374 LSLPDADVLLSSLETLKMILEE 395 (415)
T ss_pred hCCCCHHHHHHHHHHHHHHHHc
Confidence 6666666666666666666544
No 83
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=98.80 E-value=9.4e-06 Score=81.22 Aligned_cols=464 Identities=14% Similarity=0.098 Sum_probs=253.6
Q ss_pred cccccc-ccCCchHHHHHHHHHHhcccccCCCccchhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcCh---------
Q 009632 50 IPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE--------- 119 (530)
Q Consensus 50 ~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~--------- 119 (530)
...+.. +.|.-+.||..+...+..+.+..++. ....++..+-.-..|+--.+++++...+..-....++
T Consensus 474 ~~~~~~rClDkaaavR~~al~s~tk~l~l~~~~-~~~sIl~~~inS~~d~~fs~ves~~~~~~~~~~~~s~~~~tt~~l~ 552 (1529)
T KOG0413|consen 474 YNIVYMRCLDKAAAVRLHALNSLTKILQLQSHR-EAFSILCATINSEMDEKFSAVESLEDLNVSGKAPSSKTKKTTDLLL 552 (1529)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccc-chHHHHHHhcCCccccchhHHHhchhhhhcccCcccccccchhhcC
Confidence 333444 77889999999998887776655532 2344444444445566667776665554433221111
Q ss_pred ------------------hhhhhhHHHHHHHHhc-CCccchhHHHHhHhhhhcCCCChH-HHHHHHHHHHhhcCCCChhH
Q 009632 120 ------------------SDLVDWYIPLVKRLAA-GEWFTARVSACGLFHIAYPSAPDI-LKTELRSIYTQLCQDDMPMV 179 (530)
Q Consensus 120 ------------------~~~~~~l~~~l~~l~~-~~~~~~r~~~~~~l~~l~~~~~~~-~~~~l~~~l~~l~~d~~~~v 179 (530)
..++..++..+.+-.. ++...+|..+++.+.......... ..+..+-++..+|.|+-..|
T Consensus 553 ~~~~ii~d~~~~~~~~ge~~~e~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~fe~~L~iLq~lCrd~~vsv 632 (1529)
T KOG0413|consen 553 DEQQIIQDFKLKLMNKGETRVEKDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASKFEVVLSILQMLCRDRMVSV 632 (1529)
T ss_pred cchhhhhhcchhhhhccccHHHHHHHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhcchhHHHHHHHHhcCcchHH
Confidence 1123334545544444 666778999999988877777665 45666888999999999999
Q ss_pred HHHHHHHHHHHHhhhcch-hhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhh-cCc------------------hhhh
Q 009632 180 RRSAASNLGKFAATVEPA-HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKL-LEP------------------QDCV 239 (530)
Q Consensus 180 R~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~-~~~------------------~~~~ 239 (530)
|+.++.+|+.+...-+.- ......+..+...+.|.+..|.+.|.+.+..+..- +.. ..++
T Consensus 633 rk~~~~Sltel~~~~pr~~~~~~~wl~~li~~~~d~es~v~e~a~~~i~k~l~p~~~~~~dlaW~LL~~i~~~~~~s~yl 712 (1529)
T KOG0413|consen 633 RKTGADSLTELMLRDPRLFSLSSKWLHTLISMLNDTESDVTEHARKLIMKVLTPLLENSSDLAWTLLDTIESVTNHSQYL 712 (1529)
T ss_pred HHHHHHHHHHHHhhCchhhhhhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHH
Confidence 999999999987643331 12334445566667777777777777644443322 110 0010
Q ss_pred hc--------------cHHHHHHh----cCCCCHHHHHHHHH-------------------------HHHHHHHHhCC--
Q 009632 240 AH--------------ILPVIVNF----SQDKSWRVRYMVAN-------------------------QLYELCEAVGP-- 274 (530)
Q Consensus 240 ~~--------------~~~~l~~~----~~d~~~~vr~~~~~-------------------------~l~~l~~~~~~-- 274 (530)
.. ++...... ..|..|.+-..++- .+..+...++.
T Consensus 713 ~~~~h~w~~~~k~~~t~~d~~~~hsG~E~~~~aWm~~s~~~~q~~~~d~S~~~~s~~~~s~~~N~~~~L~hI~~~i~~i~ 792 (1529)
T KOG0413|consen 713 MSTLHDWVREKKVKRTVMDSMKQHSGSEKLDGAWMVFSQLCVQFEQVDFSIETFSRVDLSRESNLVQYLIHIIENIKKID 792 (1529)
T ss_pred HHHHHHHHHHHhcchhhhhhhhcccCcccCcchHHHHHHHHhcccccceeeecccccccchhhhHHHHHHHHHHHHHhhh
Confidence 00 00000000 11223433222211 11222221111
Q ss_pred -c---ccccchHHHHHHhcCCCc----HHHHHHHHHHHHHHHHhh------CHHHHHh----hhhHhHhHhccCCcHH--
Q 009632 275 -E---PTRMDLVPAYVRLLRDNE----AEVRIAAAGKVTKFCRIL------NPELAIQ----HILPCVKELSSDSSQH-- 334 (530)
Q Consensus 275 -~---~~~~~l~~~l~~~l~d~~----~~vr~~a~~~l~~~~~~~------~~~~~~~----~l~~~l~~~~~d~~~~-- 334 (530)
+ ...+.+...+..+++.+. .++-..+..+++..+..- +.+.+.. .+.|....+-....|.
T Consensus 793 ~~l~s~~vd~~~~a~K~~Ck~~~~~~s~e~~~~~~d~i~~~sl~~~e~~~~~iE~l~~~c~d~i~~~~~~~~~~~~~~~~ 872 (1529)
T KOG0413|consen 793 DDLKSDLVDTLQGAFKDYCKHPSSRSSYECLGKLMDGIGDRSLHGKEFSDFGIETLLIKCFDTIVQSFEMFKDKDEWKRN 872 (1529)
T ss_pred hcccHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHHhhcccCchHHHhhHHHhccceehhHHhhhhhhHHHhhc
Confidence 0 012234444444454432 334444444444443321 1111111 1222222111111111
Q ss_pred ---HHHHHH----HHHHhhccccCHHHHHHhHHHHHHHhhc----CC-------------------------ChHHHHHH
Q 009632 335 ---VRSALA----SVIMGMAPLLGKDATIEQLLPIFLSLLK----DE-------------------------FPDVRLNI 378 (530)
Q Consensus 335 ---vr~~~~----~~l~~l~~~~~~~~~~~~l~~~l~~~l~----d~-------------------------~~~vr~~a 378 (530)
.-..++ -.++.....++. .-..+.++++.+... |. .+.+|..+
T Consensus 873 s~~~~~~l~~~y~v~~~~~~ql~P~-ar~~K~~~lLv~s~~~gssDa~htp~tq~se~p~sqp~~~v~g~~~~~~vra~~ 951 (1529)
T KOG0413|consen 873 SESQERLLCTAYNVAFSYSPQLVPH-ARLGKTLSLLVNSTENGSSDAPHTPPTQLSEVPSSQPSSKVEGAMFSDKVRAVG 951 (1529)
T ss_pred chhHHHHHHHHhhccccccceeccc-hhccceeeeeeeeeccCCCCCCCCCccchhhCcccCCCccccccccchHHHHHH
Confidence 101111 111122222221 112233333333321 11 14578888
Q ss_pred HHhhHHhhhhhchhHHHhhHHHHHHHHhcC-CChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHH
Q 009632 379 ISKLDQVNQVIGIDLLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAA 457 (530)
Q Consensus 379 ~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~-~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~ 457 (530)
.-+++.+|-.- +.+.+.++|.+.+-++- ....+|-..+-+.+-++..... ..+..+|.+-..|.|+..-||..++
T Consensus 952 vvTlakmcLah--~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTa--m~d~YiP~I~~~L~Dp~~iVRrqt~ 1027 (1529)
T KOG0413|consen 952 VVTLAKMCLAH--DRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTA--MTDRYIPMIAASLCDPSVIVRRQTI 1027 (1529)
T ss_pred HHHHHHHHhhh--hHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHH--HHHHhhHHHHHHhcCchHHHHHHHH
Confidence 89999988654 34567889998776654 4467888877777777654432 2466899999999999999999999
Q ss_pred HHHHHHHHHhChhHHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcChHHHHhhHHHHHH
Q 009632 458 NNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVI 520 (530)
Q Consensus 458 ~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~p~l~ 520 (530)
..|..+.+.-=-.|...-++ .+.-.+-|.+.++|..|-..++.+.+.-.+.+|...++..+.
T Consensus 1028 ilL~rLLq~~~vKw~G~Lf~-Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P~~f~~~FVe~i~ 1089 (1529)
T KOG0413|consen 1028 ILLARLLQFGIVKWNGELFI-RFMLALLDANEDIRNDAKFYISEVLQSEEPNFFPLNFVEYII 1089 (1529)
T ss_pred HHHHHHHhhhhhhcchhhHH-HHHHHHcccCHHHHHHHHHHHHHHHhhcCccchHHHHHHHHH
Confidence 99998876432223223333 333446689999999999999999987776666565555443
No 84
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=98.73 E-value=1.2e-06 Score=85.46 Aligned_cols=231 Identities=16% Similarity=0.157 Sum_probs=167.8
Q ss_pred CHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhcc-CCc
Q 009632 254 SWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS-DSS 332 (530)
Q Consensus 254 ~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-d~~ 332 (530)
+..-+....+.|.++...+.......+++|.+...+.+.. ..-..+-.+-.|.+......+...++|.+....+ ...
T Consensus 286 dn~qKs~Flk~Ls~~ip~fp~rv~~~kiLP~L~~el~n~~--~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~~ 363 (700)
T KOG2137|consen 286 DNSQKSSFLKGLSKLIPTFPARVLFQKILPTLVAELVNTK--MVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSASDP 363 (700)
T ss_pred CcHHHHHHHHHHHHhhccCCHHHHHHhhhhHHHHHhcccc--ccccccchhhhhhhccchhhhhhhhhHHHHHHhccCCc
Confidence 3445666777777777777766666788888888775542 1112222333344444444556677777776655 445
Q ss_pred HHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHh-cCCCh
Q 009632 333 QHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA-EDRHW 411 (530)
Q Consensus 333 ~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~-~~~~~ 411 (530)
.+++.-+++-...+.+....+++.+.++|.+...++|.+..++..++..+..+.+.+....+.+.++|.+..+. +..+-
T Consensus 364 ~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~~ 443 (700)
T KOG2137|consen 364 KQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTNL 443 (700)
T ss_pred ccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccch
Confidence 57777888888889999999999999999999999999999999999999999999988888899999998774 45678
Q ss_pred HHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH--HhChhHHhhhhHHHHHhhccCC
Q 009632 412 RVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAE--EFGPEWAMQHITPQVLEMINNP 487 (530)
Q Consensus 412 ~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~--~~~~~~~~~~i~~~l~~~~~d~ 487 (530)
.++..++-+++.+++.++.....+.+.|++... +-+++.+.-....+...+.- ..|.+...+.++|.+..+...+
T Consensus 444 ~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~~-~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~ 520 (700)
T KOG2137|consen 444 YVKVNVLPCLAGLIQRLDKAAVLDELLPILKCI-KTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAP 520 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcc
Confidence 999999999999999888887778777766555 33445554444444433322 2234555678899888876555
No 85
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.72 E-value=0.00023 Score=72.26 Aligned_cols=356 Identities=14% Similarity=0.097 Sum_probs=211.9
Q ss_pred HHHhHhhhhcCCCChH---HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc--hhhHHHHHHHHHHhhcCCchhH
Q 009632 144 SACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSV 218 (530)
Q Consensus 144 ~~~~~l~~l~~~~~~~---~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~v 218 (530)
.+..++..++....-+ ....+++.+.++++..+.++...++..|..++-.-.+ ......+++.+.+++..++...
T Consensus 268 v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l 347 (708)
T PF05804_consen 268 VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDL 347 (708)
T ss_pred HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHH
Confidence 5666677777665433 4567888899999988999999888888888754333 2334568899999999888899
Q ss_pred HHHHHHHHHHHhhhcCc--hhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh--CCcccccchHHHHHHhcC-CCc
Q 009632 219 RLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV--GPEPTRMDLVPAYVRLLR-DNE 293 (530)
Q Consensus 219 r~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~-d~~ 293 (530)
+..++..|.+++..-.- .-....++|.+..++.+++ .|..+...|..++..- ...+.....+|.+.+++. .++
T Consensus 348 ~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~ 425 (708)
T PF05804_consen 348 VNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSE 425 (708)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCC
Confidence 99999999988754322 2334558899999998765 4455666666665321 111223356788777654 345
Q ss_pred HHHHHHHHHHHHHHHHhhCHH-HH-HhhhhHhHhHhc-cCCcHHHHHHHHHHHHhhccccCH--HHHHHhHHHHHHHhhc
Q 009632 294 AEVRIAAAGKVTKFCRILNPE-LA-IQHILPCVKELS-SDSSQHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLK 368 (530)
Q Consensus 294 ~~vr~~a~~~l~~~~~~~~~~-~~-~~~l~~~l~~~~-~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~ 368 (530)
+.+...++..+..++..-... .+ ....++.+.+.. +.+++ .++..+-.++..-|+ ..+.+.+.+++-.+-.
T Consensus 426 ~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~----lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~ 501 (708)
T PF05804_consen 426 EEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDP----LLLKLIRNISQHDGPLKELFVDFIGDLAKIVSS 501 (708)
T ss_pred ccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccH----HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhc
Confidence 556555544444443322111 01 112233333222 22221 222334444433322 2233444443333223
Q ss_pred CCChHHHHHHHHhhHHhhh-hhchhHHH--hhHHHHHHHHhcCC--ChHHHHHHHHHHHHHHhhhChhh--HHHHHHHHH
Q 009632 369 DEFPDVRLNIISKLDQVNQ-VIGIDLLS--QSLLPAIVELAEDR--HWRVRLAIIEYIPLLASQLGVGF--FDDKLGALC 441 (530)
Q Consensus 369 d~~~~vr~~a~~~l~~l~~-~~~~~~~~--~~l~~~l~~~~~~~--~~~~R~~~~~~l~~l~~~~~~~~--~~~~~~~~l 441 (530)
.++++....++.+++++.. .++...+. ..++|.+.+.+... ...+...++.++|.++..-.... ....+++.+
T Consensus 502 ~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~L 581 (708)
T PF05804_consen 502 GDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTL 581 (708)
T ss_pred CCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHH
Confidence 3455555555555555431 11112222 37889998887654 34677778888888775322222 224567777
Q ss_pred HHHhcCC--cHHHHHHHHHHHHHHHHHhChhH---HhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhh
Q 009632 442 MQWLQDK--VYSIRDAAANNLKRLAEEFGPEW---AMQHITPQVLEMINNPHYLYRMTILRAISLLAPV 505 (530)
Q Consensus 442 ~~~l~d~--~~~Vr~~a~~~l~~l~~~~~~~~---~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~ 505 (530)
..+++.+ +.+.-...+.++.++...-.... ....+...+..++.|+|..+|..+-.++.-+++.
T Consensus 582 i~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~ 650 (708)
T PF05804_consen 582 IELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEY 650 (708)
T ss_pred HHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 7777653 35566666777766664421111 1256788899999999999999999999887765
No 86
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=9.9e-05 Score=72.44 Aligned_cols=304 Identities=13% Similarity=0.157 Sum_probs=180.6
Q ss_pred HHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcc-cccchHH
Q 009632 205 SIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP-TRMDLVP 283 (530)
Q Consensus 205 ~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~-~~~~l~~ 283 (530)
+.+.+-++++|+.||-..++.+..+ .+......++|.+...+++++..||+.+.-++..+...+..-. ....++.
T Consensus 102 na~RkDLQHPNEyiRG~TLRFLckL----kE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pDapeLi~ 177 (948)
T KOG1058|consen 102 NAYRKDLQHPNEYIRGSTLRFLCKL----KEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAPELIE 177 (948)
T ss_pred HHHhhhccCchHhhcchhhhhhhhc----CcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCChHHHHH
Confidence 4566778899999999887776554 4445677899999999999999999999988888776522110 0112222
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHH
Q 009632 284 AYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIF 363 (530)
Q Consensus 284 ~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l 363 (530)
-+ +..+.+|..+.+|.-.|... +++.....+...+.+ +.+-+......+++.+-..+..-+ ......+..+
T Consensus 178 ~f--L~~e~DpsCkRNAFi~L~~~----D~ErAl~Yl~~~idq-i~~~~~~LqlViVE~Irkv~~~~p--~~~~~~i~~i 248 (948)
T KOG1058|consen 178 SF--LLTEQDPSCKRNAFLMLFTT----DPERALNYLLSNIDQ-IPSFNDSLQLVIVELIRKVCLANP--AEKARYIRCI 248 (948)
T ss_pred HH--HHhccCchhHHHHHHHHHhc----CHHHHHHHHHhhHhh-ccCccHHHHHHHHHHHHHHHhcCH--HHhhHHHHHH
Confidence 22 33677778877776555433 222222222222222 122233455666666666554222 2234566778
Q ss_pred HHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHh-cCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHH
Q 009632 364 LSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCM 442 (530)
Q Consensus 364 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~-~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~ 442 (530)
+.+|...++.|+..|+.++..+... +...+.-...+.+++ +.++..++.-.+.-+..+. ....+ ..+.++--++
T Consensus 249 ~~lL~stssaV~fEaa~tlv~lS~~---p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~-~~~~~-il~~l~mDvL 323 (948)
T KOG1058|consen 249 YNLLSSTSSAVIFEAAGTLVTLSND---PTALKAAASTYIDLLVKESDNNVKLIVLDRLSELK-ALHEK-ILQGLIMDVL 323 (948)
T ss_pred HHHHhcCCchhhhhhcceEEEccCC---HHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHh-hhhHH-HHHHHHHHHH
Confidence 8888888888888887777666433 111122222233332 2334445555555555554 12222 2333444456
Q ss_pred HHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhc---cCCChHHHHHHHHHHHHHhhhcChHHHHhhHHHHH
Q 009632 443 QWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI---NNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVV 519 (530)
Q Consensus 443 ~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~---~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~p~l 519 (530)
..++.++-+||..++...-.++....-+...+.+-..+.+.- +|.+...|+..++++..++..++. +...++|.+
T Consensus 324 rvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~--~aatvV~~l 401 (948)
T KOG1058|consen 324 RVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPE--VAATVVSLL 401 (948)
T ss_pred HHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChH--HHHHHHHHH
Confidence 778888888999888877666655432222222222222221 345667788888888888776653 467788888
Q ss_pred HhhccCCCC
Q 009632 520 INASKDRYL 528 (530)
Q Consensus 520 ~~~l~D~~~ 528 (530)
+.++.|..+
T Consensus 402 l~fisD~N~ 410 (948)
T KOG1058|consen 402 LDFISDSNE 410 (948)
T ss_pred HHHhccCCH
Confidence 888888654
No 87
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.68 E-value=0.00039 Score=67.56 Aligned_cols=136 Identities=15% Similarity=0.137 Sum_probs=98.8
Q ss_pred CCChHHHHHHHHhhHHhhhhhc---hhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhC---hhhHHHHHHHHHH
Q 009632 369 DEFPDVRLNIISKLDQVNQVIG---IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCM 442 (530)
Q Consensus 369 d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~---~~~~~~~~~~~l~ 442 (530)
-.+..++.+++..+..+..-+. ...-...+...+++++.++...+...++.++.+++-.++ ..+.....+..+.
T Consensus 388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~ 467 (678)
T KOG1293|consen 388 IKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILE 467 (678)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHH
Confidence 4567788888887777654332 111123556667777799999999999999999887766 3445566888999
Q ss_pred HHhcCCcHHHHHHHHHHHHHHHHHhChhHHh----hhhHHHHHhhccCCChHHHHHHHHHHHHHhh
Q 009632 443 QWLQDKVYSIRDAAANNLKRLAEEFGPEWAM----QHITPQVLEMINNPHYLYRMTILRAISLLAP 504 (530)
Q Consensus 443 ~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~----~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~ 504 (530)
+++.|+.+++|..+..+|..+.-...+.... ..-...+..+.+||++.|++.+...+.++.-
T Consensus 468 s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c 533 (678)
T KOG1293|consen 468 SMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTC 533 (678)
T ss_pred HHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhc
Confidence 9999999999999999998876544333221 1123334556799999999999999998753
No 88
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.66 E-value=2.5e-07 Score=68.28 Aligned_cols=70 Identities=20% Similarity=0.143 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchh--hHHHHHHHHHHhhcCCchhHHHHHHHHHHHH
Q 009632 159 ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH--LKTDIMSIFEDLTQDDQDSVRLLAVEGCAAL 229 (530)
Q Consensus 159 ~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l 229 (530)
++.+.+++.++..++|++++||..|+++|.++++..+.+. +.+++++.+.+++.|.++.||..| +.+..+
T Consensus 23 ~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 23 KYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDRL 94 (97)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHH
Confidence 3667888999999999999999999999999999887743 356788999999999999999976 444443
No 89
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=0.00054 Score=66.97 Aligned_cols=435 Identities=13% Similarity=0.089 Sum_probs=226.1
Q ss_pred HHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhccccccccccCCchHHHHHHHHHHhcccccCCCccchhcchhH
Q 009632 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPP 90 (530)
Q Consensus 11 ~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~ 90 (530)
+..+..-|.|.|+..-.-|+..++.++..---+....+ +|.+....+..+-||+.+|.|+-.+-+.-.+-.....-..-
T Consensus 113 in~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~D-I~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~r 191 (938)
T KOG1077|consen 113 INSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADD-IPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQR 191 (938)
T ss_pred HHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhh-hHHHHhCCcchHHHHHHHHHHHHHHHhcCccccChhhHHHH
Confidence 34455566677777767777777766422111222222 33333345567789999999986665532211111122223
Q ss_pred HHhhhcccchHHHHHHHHHHHHHHhhcChhhhhh--hHHHHHHHHhcCCc-------------cchhHHHHhHhhhhcCC
Q 009632 91 LETLCTVEETCVRDKAVESLCRIGSQMRESDLVD--WYIPLVKRLAAGEW-------------FTARVSACGLFHIAYPS 155 (530)
Q Consensus 91 l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~--~l~~~l~~l~~~~~-------------~~~r~~~~~~l~~l~~~ 155 (530)
+..++.|.+-.|--++..-+..+++..+++.... ..+..+.++..... +=...-.++++...-.-
T Consensus 192 iv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~ 271 (938)
T KOG1077|consen 192 IVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTP 271 (938)
T ss_pred HHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCC
Confidence 4445667777777777777777888777643221 12222222221110 10111233333332111
Q ss_pred CChHHHHHHHHHHHhhc---CCC--C-----hhHHHHHHHHHHHHHhhhcc-hhhHHHHHHHHHHhhcCCchhHHHHHHH
Q 009632 156 APDILKTELRSIYTQLC---QDD--M-----PMVRRSAASNLGKFAATVEP-AHLKTDIMSIFEDLTQDDQDSVRLLAVE 224 (530)
Q Consensus 156 ~~~~~~~~l~~~l~~l~---~d~--~-----~~vR~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~~~d~~~~vr~~a~~ 224 (530)
-.+..+..+.+.+..++ +++ + ..++.+.+-..-.++..++. +.........+-+++++.+..+|-.|++
T Consensus 272 ~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLE 351 (938)
T KOG1077|consen 272 EDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALE 351 (938)
T ss_pred CCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHH
Confidence 11123333333333332 211 1 12223333333344444444 3445667788888999999999999999
Q ss_pred HHHHHhhhcCchhhhhccHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHH
Q 009632 225 GCAALGKLLEPQDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGK 303 (530)
Q Consensus 225 ~l~~l~~~~~~~~~~~~~~~~l~~~~~-d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~ 303 (530)
.+..++..-...+...+-...+...++ +++..+|+.++..|..++..-. ...++.-+++.+...++.+|+..+--
T Consensus 352 sm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~N----ak~IV~elLqYL~tAd~sireeivlK 427 (938)
T KOG1077|consen 352 SMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSN----AKQIVAELLQYLETADYSIREEIVLK 427 (938)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchhh----HHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 999888763322222223445555555 7888999999999999886432 34677788888888889999988877
Q ss_pred HHHHHHhhCHH--HHHhhhhHhHhHh---ccCCcHHHHHHHHHHHHhhcccc-CHHHHHHhHHHHHHHhhcCC--ChHHH
Q 009632 304 VTKFCRILNPE--LAIQHILPCVKEL---SSDSSQHVRSALASVIMGMAPLL-GKDATIEQLLPIFLSLLKDE--FPDVR 375 (530)
Q Consensus 304 l~~~~~~~~~~--~~~~~l~~~l~~~---~~d~~~~vr~~~~~~l~~l~~~~-~~~~~~~~l~~~l~~~l~d~--~~~vr 375 (530)
..-+++.+..+ ++...++..+.-. ..|.-| ..+++.. ..+......-.-+...|+.+ .+.+-
T Consensus 428 vAILaEKyAtDy~WyVdviLqLiriagd~vsdeVW----------~RvvQiVvNnedlq~yaak~~fe~Lq~~a~hE~mV 497 (938)
T KOG1077|consen 428 VAILAEKYATDYSWYVDVILQLIRIAGDYVSDEVW----------YRVVQIVVNNEDLQGYAAKRLFEYLQKPACHENMV 497 (938)
T ss_pred HHHHHHHhcCCcchhHHHHHHHHHHhcccccHHHH----------HHhheeEecchhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 77777765443 3333333333211 112112 1112111 12222233333334444322 12233
Q ss_pred HHHHHhhHHhhhhhchhH--HHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHH
Q 009632 376 LNIISKLDQVNQVIGIDL--LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIR 453 (530)
Q Consensus 376 ~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr 453 (530)
..+.-.||++++.+..+. -....+..+-+-+...+...|...+.+.-.+..... .....+...+....+-.+.++.
T Consensus 498 KvggyiLGEfg~LIa~~prss~~~qFsllh~K~~~~s~~tr~lLLtTyiKl~nl~P--Ei~~~v~~vFq~~~n~~D~ElQ 575 (938)
T KOG1077|consen 498 KVGGYILGEFGNLIADDPRSSPAVQFSLLHEKLHLCSPVTRALLLTTYIKLINLFP--EIKSNVQKVFQLYSNLIDVELQ 575 (938)
T ss_pred HhhhhhhhhhhhhhcCCCCCChHHHHHHHHHHhccCChhHHHHHHHHHHHHHhhCh--hhhHHHHHHHHhhcccCCHHHH
Confidence 333344444444443211 112233344444444456677766666666655442 2234455666666666778888
Q ss_pred HHHHHHHHH
Q 009632 454 DAAANNLKR 462 (530)
Q Consensus 454 ~~a~~~l~~ 462 (530)
..|++-+.-
T Consensus 576 qRa~EYLql 584 (938)
T KOG1077|consen 576 QRAVEYLQL 584 (938)
T ss_pred HHHHHHHHH
Confidence 888886643
No 90
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.64 E-value=6.7e-07 Score=66.02 Aligned_cols=90 Identities=16% Similarity=0.155 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHhhhChhh--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHH--hhhhHHHHHhhccCCC
Q 009632 413 VRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA--MQHITPQVLEMINNPH 488 (530)
Q Consensus 413 ~R~~~~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~--~~~i~~~l~~~~~d~~ 488 (530)
.|..++.++..++..++... +.+.++|.++.++.|+++.||..|++++..+.+..+.... ..++.+.+.++..|++
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 47778888888887777543 4577888899999999999999999999999888765543 3678888888899999
Q ss_pred hHHHHHHHHHHHHHh
Q 009632 489 YLYRMTILRAISLLA 503 (530)
Q Consensus 489 ~~vr~~a~~~l~~i~ 503 (530)
..||.+| +.+.++.
T Consensus 82 ~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 82 ENVRSAA-ELLDRLL 95 (97)
T ss_pred hhHHHHH-HHHHHHh
Confidence 9998866 5555543
No 91
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=3.3e-05 Score=75.45 Aligned_cols=291 Identities=16% Similarity=0.093 Sum_probs=164.1
Q ss_pred ChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCC-chhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcCCCC
Q 009632 176 MPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDD-QDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKS 254 (530)
Q Consensus 176 ~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~ 254 (530)
+.-.--.++.++|-+-...+.. +..++.+.+.+. ++.||..+.-.++-.+-... ...+...+.+.+..++
T Consensus 392 s~y~EGGalyAlGLIhA~hG~~-----~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa----~~eiYe~lKevLy~D~ 462 (929)
T KOG2062|consen 392 SGYKEGGALYALGLIHANHGRG-----ITDYLLQQLKTAENEVVRHGACLGLGLAGMGSA----NEEIYEKLKEVLYNDS 462 (929)
T ss_pred CCccccchhhhhhccccCcCcc-----HHHHHHHHHHhccchhhhhhhhhhccchhcccc----cHHHHHHHHHHHhccc
Confidence 3334446777777766655543 344445455443 55677766655554433222 2235566666666555
Q ss_pred HHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCc-HHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcH
Q 009632 255 WRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNE-AEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQ 333 (530)
Q Consensus 255 ~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~ 333 (530)
...-.++.-.+|-+.-.... ...+.-+++.-.++. ..+.....-.+. +..+|.+ +..-|++.+++.|+++
T Consensus 463 AvsGEAAgi~MGl~mlGt~~----~eaiedm~~Ya~ETQHeki~RGl~vGia--L~~ygrq---e~Ad~lI~el~~dkdp 533 (929)
T KOG2062|consen 463 AVSGEAAGIAMGLLMLGTAN----QEAIEDMLTYAQETQHEKIIRGLAVGIA--LVVYGRQ---EDADPLIKELLRDKDP 533 (929)
T ss_pred hhhhhHHHHhhhhHhhCcCc----HHHHHHHHHHhhhhhHHHHHHHHHHhHH--HHHhhhh---hhhHHHHHHHhcCCch
Confidence 44445555555554433222 223333333333332 223332222222 1223332 3446677888889999
Q ss_pred HHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcC-CChH
Q 009632 334 HVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED-RHWR 412 (530)
Q Consensus 334 ~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~-~~~~ 412 (530)
-.|..-+-.+..--..-|.......+++ -..+|.+.+||.+|+-+++-++-. .+..+|..+.++++ -|+.
T Consensus 534 ilR~~Gm~t~alAy~GTgnnkair~lLh---~aVsD~nDDVrRaAVialGFVl~~------dp~~~~s~V~lLses~N~H 604 (929)
T KOG2062|consen 534 ILRYGGMYTLALAYVGTGNNKAIRRLLH---VAVSDVNDDVRRAAVIALGFVLFR------DPEQLPSTVSLLSESYNPH 604 (929)
T ss_pred hhhhhhHHHHHHHHhccCchhhHHHhhc---ccccccchHHHHHHHHHheeeEec------ChhhchHHHHHHhhhcChh
Confidence 8887665444332222222222222222 236899999999999998876543 13455555555554 4799
Q ss_pred HHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHH--hhhhHHHHHhhccCCChH
Q 009632 413 VRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA--MQHITPQVLEMINNPHYL 490 (530)
Q Consensus 413 ~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~--~~~i~~~l~~~~~d~~~~ 490 (530)
||..+..+++..+..-|... -+..+..+..|++.-||..|+.+++-|.-...+... ...+...+.+..+|++.+
T Consensus 605 VRyGaA~ALGIaCAGtG~~e----Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dKhEd 680 (929)
T KOG2062|consen 605 VRYGAAMALGIACAGTGLKE----AINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDKHED 680 (929)
T ss_pred hhhhHHHHHhhhhcCCCcHH----HHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhhhhH
Confidence 99999999998887777544 344555667899999999999999888766543321 134556666666666444
Q ss_pred --HHHHHHH
Q 009632 491 --YRMTILR 497 (530)
Q Consensus 491 --vr~~a~~ 497 (530)
++..|+-
T Consensus 681 ~~aK~GAil 689 (929)
T KOG2062|consen 681 GMAKFGAIL 689 (929)
T ss_pred HHHHHHHHH
Confidence 4444443
No 92
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=98.63 E-value=0.00084 Score=67.64 Aligned_cols=236 Identities=14% Similarity=0.103 Sum_probs=148.3
Q ss_pred CCcHHHHHHHHHHHHHHHHh--hCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhc
Q 009632 291 DNEAEVRIAAAGKVTKFCRI--LNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK 368 (530)
Q Consensus 291 d~~~~vr~~a~~~l~~~~~~--~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~ 368 (530)
...|..-..++.+++.+... ..+......+-..+..+..|..+.+|..+++.+...++.---..+.+.++..+.++..
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~~~p~ild~L~qlas 540 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLSLQPMILDGLLQLAS 540 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhccCceeccccchHHHHHHHHHcc
Confidence 34455555777777776665 2232222222223334455777788999988888877433334567788889999999
Q ss_pred CCChHHHHHHHHhhHHhhhhhchh--HHHhhHHHHHHHH----hcCCChHHHHHHHHHHHHHHhhhC-hhhHHHHHHHHH
Q 009632 369 DEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVEL----AEDRHWRVRLAIIEYIPLLASQLG-VGFFDDKLGALC 441 (530)
Q Consensus 369 d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~----~~~~~~~~R~~~~~~l~~l~~~~~-~~~~~~~~~~~l 441 (530)
+.+.++-....+++..+++.=... .....+.|.+..+ .+| +.+-..+-.++..+.+... -+.....++|-+
T Consensus 541 ~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~D--P~V~~~~qd~f~el~q~~~~~g~m~e~~iPsl 618 (1005)
T KOG2274|consen 541 KSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSED--PQVASLAQDLFEELLQIAANYGPMQERLIPSL 618 (1005)
T ss_pred cccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 999999999999999888753221 1224556655443 344 3555555555555554221 122456789999
Q ss_pred HHHhcCCc----HHHHHHHHHHHHHHHHHhChhH---HhhhhHHHHHhhc-cCCChHHHHHHHHHHHHHhhhcC------
Q 009632 442 MQWLQDKV----YSIRDAAANNLKRLAEEFGPEW---AMQHITPQVLEMI-NNPHYLYRMTILRAISLLAPVMG------ 507 (530)
Q Consensus 442 ~~~l~d~~----~~Vr~~a~~~l~~l~~~~~~~~---~~~~i~~~l~~~~-~d~~~~vr~~a~~~l~~i~~~~~------ 507 (530)
.+.+.-+. +.....++..|..+.++-.++. ......|.+.++. ...+...-+++-+++..++..-.
T Consensus 619 isil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~ 698 (1005)
T KOG2274|consen 619 ISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTW 698 (1005)
T ss_pred HHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhh
Confidence 99887655 5677788888888888765542 2256677777764 44566777888888888766521
Q ss_pred ---hHHHHhhHHHHHHhhccCCCC
Q 009632 508 ---SEITCSRLLPVVINASKDRYL 528 (530)
Q Consensus 508 ---~~~~~~~~~p~l~~~l~D~~~ 528 (530)
+.....+++-.+-++|+-++.
T Consensus 699 ~~e~g~~~~yImqV~sqLLdp~~s 722 (1005)
T KOG2274|consen 699 HDEPGHNLWYIMQVLSQLLDPETS 722 (1005)
T ss_pred ccCCCccHHHHHHHHHHHcCCccc
Confidence 111133677777766665543
No 93
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=98.63 E-value=3.5e-06 Score=82.40 Aligned_cols=231 Identities=15% Similarity=0.244 Sum_probs=178.0
Q ss_pred CcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhc-CC
Q 009632 292 NEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK-DE 370 (530)
Q Consensus 292 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~ 370 (530)
.++.-+...++.|..+...++...+...++|.+.+.+.+. ..--...-.+..+++......|..+++|.+...++ ..
T Consensus 285 kdn~qKs~Flk~Ls~~ip~fp~rv~~~kiLP~L~~el~n~--~~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~ 362 (700)
T KOG2137|consen 285 KDNSQKSSFLKGLSKLIPTFPARVLFQKILPTLVAELVNT--KMVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSASD 362 (700)
T ss_pred cCcHHHHHHHHHHHHhhccCCHHHHHHhhhhHHHHHhccc--cccccccchhhhhhhccchhhhhhhhhHHHHHHhccCC
Confidence 4556788889999999999998888899999998765432 22222333445556666667788899999998888 55
Q ss_pred ChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHH-hcCCc
Q 009632 371 FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW-LQDKV 449 (530)
Q Consensus 371 ~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~-l~d~~ 449 (530)
...++...++.+..+.+....+.+.+.++|.|....++.+..+...++..+..+++.++-.+..+.++|-+.++ ++...
T Consensus 363 ~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~ 442 (700)
T KOG2137|consen 363 PKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTN 442 (700)
T ss_pred cccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccc
Confidence 67788999999999999999999999999999999999999999999999999999999888889999998886 45677
Q ss_pred HHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcC--hHHHHhhHHHHHHhhccC
Q 009632 450 YSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG--SEITCSRLLPVVINASKD 525 (530)
Q Consensus 450 ~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~--~~~~~~~~~p~l~~~l~D 525 (530)
..|+..++-|++.+.+.+......+.+.| +.+..+-++..+..+...+...+.-... .+...++++|.+.-+..-
T Consensus 443 ~~vkvn~L~c~~~l~q~lD~~~v~d~~lp-i~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~ 519 (700)
T KOG2137|consen 443 LYVKVNVLPCLAGLIQRLDKAAVLDELLP-ILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVA 519 (700)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhc
Confidence 88999999999999988765444444444 4445556666777777777776654332 366677788877665543
No 94
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.58 E-value=5.7e-05 Score=70.21 Aligned_cols=271 Identities=12% Similarity=0.057 Sum_probs=151.4
Q ss_pred HHHHHHHHHHHHHHHHhCCcc-cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH----HHHhh-hhHhHh-H--
Q 009632 256 RVRYMVANQLYELCEAVGPEP-TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----LAIQH-ILPCVK-E-- 326 (530)
Q Consensus 256 ~vr~~~~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~----~~~~~-l~~~l~-~-- 326 (530)
.+|..+.+.+..++.++|-.. +.-.+...+-..+.+..|.++..+...+..+....+.+ .+... ....+- .
T Consensus 270 ~~rle~~qvl~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l 349 (728)
T KOG4535|consen 270 PMRLEALQVLTLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMML 349 (728)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHc
Confidence 477778888888887766321 12234445555677889999999999998887765522 11111 111010 0
Q ss_pred ------hccC-CcHHHHHHHHHHHHhhcccc--CHHHHHHhHHHHHHHhhcCC-ChHHHHHHHHhhHHhhhhhchhH---
Q 009632 327 ------LSSD-SSQHVRSALASVIMGMAPLL--GKDATIEQLLPIFLSLLKDE-FPDVRLNIISKLDQVNQVIGIDL--- 393 (530)
Q Consensus 327 ------~~~d-~~~~vr~~~~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~--- 393 (530)
...| .....+.+.+..+..+...- +-+.-.....+.+..-..|. +.-+|.+|..+++.+.-.-+...
T Consensus 350 ~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~ 429 (728)
T KOG4535|consen 350 NGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVI 429 (728)
T ss_pred cCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHH
Confidence 1111 12234455555555543221 00111123444555444443 44588888888877654433322
Q ss_pred HHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhC-----hhhHHHHHHHHHH----HHh---cCCcHHHHHHHHHHHH
Q 009632 394 LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG-----VGFFDDKLGALCM----QWL---QDKVYSIRDAAANNLK 461 (530)
Q Consensus 394 ~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~-----~~~~~~~~~~~l~----~~l---~d~~~~Vr~~a~~~l~ 461 (530)
+.......+...+.|+....|..+..+++.+...+- .+.+...+...++ ... .-....||..+.+.||
T Consensus 430 fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLg 509 (728)
T KOG4535|consen 430 FVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALG 509 (728)
T ss_pred HHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHh
Confidence 122333445556678888899999999999887652 2223333322222 211 1234578999999999
Q ss_pred HHHHHhChhH--HhhhhHH-HHHh----hccCCChHHHHHHHHHHHHHhhhcC----hHHHHhhHHHHHHhhccCC
Q 009632 462 RLAEEFGPEW--AMQHITP-QVLE----MINNPHYLYRMTILRAISLLAPVMG----SEITCSRLLPVVINASKDR 526 (530)
Q Consensus 462 ~l~~~~~~~~--~~~~i~~-~l~~----~~~d~~~~vr~~a~~~l~~i~~~~~----~~~~~~~~~p~l~~~l~D~ 526 (530)
.+.+.+.+-. ...+++. .+.+ .....+..||=+++++++++.++-. ..+..+.++|.|..++.|.
T Consensus 510 nllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~ 585 (728)
T KOG4535|consen 510 NLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSC 585 (728)
T ss_pred hHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHh
Confidence 8887654210 0011111 1222 2334588899999999999987522 2345677888887776653
No 95
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=0.00056 Score=60.68 Aligned_cols=166 Identities=13% Similarity=0.122 Sum_probs=104.4
Q ss_pred HHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChH--------HHHHHHHHHHhhcCCCCh
Q 009632 106 AVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI--------LKTELRSIYTQLCQDDMP 177 (530)
Q Consensus 106 a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~--------~~~~l~~~l~~l~~d~~~ 177 (530)
++.+|.++.+...+..+...++|.+..-+..++..++..+|..++.+.+.+... .-.++++.+..+...++.
T Consensus 63 cVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggedd 142 (524)
T KOG4413|consen 63 CVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDD 142 (524)
T ss_pred HHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcH
Confidence 778888888888777777888999998888888899999999999988877642 125688888888889999
Q ss_pred hHHHHHHHHHHHHHhhhcc--hhhHHHHHH--HHHHhhcCCchhHHHHHHHHHHHHhhhcCc---hhhhhccHHHHHHhc
Q 009632 178 MVRRSAASNLGKFAATVEP--AHLKTDIMS--IFEDLTQDDQDSVRLLAVEGCAALGKLLEP---QDCVAHILPVIVNFS 250 (530)
Q Consensus 178 ~vR~~a~~~l~~l~~~~~~--~~~~~~l~~--~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~~ 250 (530)
+|.+++.+.+..++..-.. ..|.+.+.+ .+.++..--++-+|-...+.+..+...-+. +...+.++..+..-+
T Consensus 143 eVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaEl 222 (524)
T KOG4413|consen 143 EVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAEL 222 (524)
T ss_pred HHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHh
Confidence 9999999999888753211 111111111 111222223445566556655555443222 111223444443333
Q ss_pred C-CCCHHHHHHHHHHHHHHHHH
Q 009632 251 Q-DKSWRVRYMVANQLYELCEA 271 (530)
Q Consensus 251 ~-d~~~~vr~~~~~~l~~l~~~ 271 (530)
+ .++.-|+..+.+....++..
T Consensus 223 kGteDtLVianciElvteLaet 244 (524)
T KOG4413|consen 223 KGTEDTLVIANCIELVTELAET 244 (524)
T ss_pred cCCcceeehhhHHHHHHHHHHH
Confidence 3 24555666666666666543
No 96
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.52 E-value=0.00022 Score=69.63 Aligned_cols=224 Identities=19% Similarity=0.155 Sum_probs=147.9
Q ss_pred HHHHHHHHHHHhhcChh----hhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCC---CChHHHHHHHHHHHhhcCCCC
Q 009632 104 DKAVESLCRIGSQMRES----DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPS---APDILKTELRSIYTQLCQDDM 176 (530)
Q Consensus 104 ~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~---~~~~~~~~l~~~l~~l~~d~~ 176 (530)
...++-+.+++..+++. ++...+...+.+....++..||.-++++++.+... .++...+.+...+..-+.|..
T Consensus 60 dRIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Dre 139 (892)
T KOG2025|consen 60 DRILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDRE 139 (892)
T ss_pred HHHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccC
Confidence 34444555666655542 23333444445555667888999999999988763 345577888888888889999
Q ss_pred hhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhh-cCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcCCCCH
Q 009632 177 PMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLT-QDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSW 255 (530)
Q Consensus 177 ~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~ 255 (530)
|.||..|+.+|..+-..-.++. -.+...+..++ +|++++||.+|+..+.. .+.-+|++.+-..|-+.
T Consensus 140 p~VRiqAv~aLsrlQ~d~~dee--~~v~n~l~~liqnDpS~EVRRaaLsnI~v----------dnsTlp~IveRarDV~~ 207 (892)
T KOG2025|consen 140 PNVRIQAVLALSRLQGDPKDEE--CPVVNLLKDLIQNDPSDEVRRAALSNISV----------DNSTLPCIVERARDVSG 207 (892)
T ss_pred chHHHHHHHHHHHHhcCCCCCc--ccHHHHHHHHHhcCCcHHHHHHHHHhhcc----------CcccchhHHHHhhhhhH
Confidence 9999999999999875322221 23445555444 68899999998877643 34467888888999888
Q ss_pred HHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHH
Q 009632 256 RVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHV 335 (530)
Q Consensus 256 ~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~v 335 (530)
.+|+.+...+..=...-. ....+-+-.+...+.|.+..|+.++..++..=.-.... ..++..+..+--+.+.+|
T Consensus 208 anRrlvY~r~lpkid~r~--lsi~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~~d----gni~ElL~~ldvsnss~v 281 (892)
T KOG2025|consen 208 ANRRLVYERCLPKIDLRS--LSIDKRVLLLEWGLNDREFSVKGALVDAILSGWLRFSD----GNILELLERLDVSNSSEV 281 (892)
T ss_pred HHHHHHHHHhhhhhhhhh--hhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhcc----ccHHHHHHHhccccchHH
Confidence 899888765433222111 11235566778889999999999998887653221111 234444555444455577
Q ss_pred HHHHHHHHHh
Q 009632 336 RSALASVIMG 345 (530)
Q Consensus 336 r~~~~~~l~~ 345 (530)
+..+++++-.
T Consensus 282 avk~lealf~ 291 (892)
T KOG2025|consen 282 AVKALEALFS 291 (892)
T ss_pred HHHHHHHHHH
Confidence 7777766654
No 97
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=98.51 E-value=0.0018 Score=65.40 Aligned_cols=151 Identities=15% Similarity=0.219 Sum_probs=105.1
Q ss_pred cCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhH---HHHHHHHHHH-
Q 009632 368 KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF---DDKLGALCMQ- 443 (530)
Q Consensus 368 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~---~~~~~~~l~~- 443 (530)
.|..+.+|..|+.++...++.---....+.++..+..+..+.+..+-...+++++.+++. ++++. ...+.|.++.
T Consensus 501 ~~~~~~~ki~a~~~~~~~~~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~-dpef~as~~skI~P~~i~l 579 (1005)
T KOG2274|consen 501 MDVPPPVKISAVRAFCGYCKVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKL-DPEFAASMESKICPLTINL 579 (1005)
T ss_pred cCCCCchhHHHHHHHHhccCceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhcc-ChhhhhhhhcchhHHHHHH
Confidence 366677888888887777643222234467888888888888888999999999988763 44432 2445555544
Q ss_pred ---HhcCCcHHHHHHHHHHHHHHHHHh---ChhHHhhhhHHHHHhhccCCC----hHHHHHHHHHHHHHhhhcCh---HH
Q 009632 444 ---WLQDKVYSIRDAAANNLKRLAEEF---GPEWAMQHITPQVLEMINNPH----YLYRMTILRAISLLAPVMGS---EI 510 (530)
Q Consensus 444 ---~l~d~~~~Vr~~a~~~l~~l~~~~---~~~~~~~~i~~~l~~~~~d~~----~~vr~~a~~~l~~i~~~~~~---~~ 510 (530)
..+|+ .|-..+-.++..+.+.. |+. ++..+|.+.+.++-++ ......++..+..+.+.-++ ..
T Consensus 580 F~k~s~DP--~V~~~~qd~f~el~q~~~~~g~m--~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~ 655 (1005)
T KOG2274|consen 580 FLKYSEDP--QVASLAQDLFEELLQIAANYGPM--QERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNL 655 (1005)
T ss_pred HHHhcCCc--hHHHHHHHHHHHHHHHHHhhcch--HHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHH
Confidence 44454 78888888887777643 332 4778999998877654 56677888888888887653 44
Q ss_pred HHhhHHHHHHhhc
Q 009632 511 TCSRLLPVVINAS 523 (530)
Q Consensus 511 ~~~~~~p~l~~~l 523 (530)
+..+.+|.+.++.
T Consensus 656 l~~~~FpaVak~t 668 (1005)
T KOG2274|consen 656 LICYAFPAVAKIT 668 (1005)
T ss_pred HHHHHhHHhHhhe
Confidence 6788888877643
No 98
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=98.50 E-value=0.0019 Score=65.51 Aligned_cols=183 Identities=14% Similarity=0.041 Sum_probs=123.5
Q ss_pred HHHHHHHHhcCCccchhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc---------
Q 009632 126 YIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP--------- 196 (530)
Q Consensus 126 l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~--------- 196 (530)
+..++..-+-|+...+|..|...++.+....+...-..++..+...+.|+-..+++++..++..-...+..
T Consensus 473 ~~~~~~~rClDkaaavR~~al~s~tk~l~l~~~~~~~sIl~~~inS~~d~~fs~ves~~~~~~~~~~~~s~~~~tt~~l~ 552 (1529)
T KOG0413|consen 473 LYNIVYMRCLDKAAAVRLHALNSLTKILQLQSHREAFSILCATINSEMDEKFSAVESLEDLNVSGKAPSSKTKKTTDLLL 552 (1529)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccchHHHHHHhcCCccccchhHHHhchhhhhcccCcccccccchhhcC
Confidence 44455555667778888888877776655444444455666666666666666666655444332211110
Q ss_pred ------------------hhhHHHHHHHHHHhhc-CCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcCCCCHHH
Q 009632 197 ------------------AHLKTDIMSIFEDLTQ-DDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRV 257 (530)
Q Consensus 197 ------------------~~~~~~l~~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~v 257 (530)
..+...++..+...+. |+...||..|...+.+...++..+...+.++-++..+|.|+-..|
T Consensus 553 ~~~~ii~d~~~~~~~~ge~~~e~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~fe~~L~iLq~lCrd~~vsv 632 (1529)
T KOG0413|consen 553 DEQQIIQDFKLKLMNKGETRVEKDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASKFEVVLSILQMLCRDRMVSV 632 (1529)
T ss_pred cchhhhhhcchhhhhccccHHHHHHHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhcchhHHHHHHHHhcCcchHH
Confidence 1223446666666666 888889999999999999988887777778999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcc-cccchHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 009632 258 RYMVANQLYELCEAVGPEP-TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFC 308 (530)
Q Consensus 258 r~~~~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~ 308 (530)
|..++..|+.+...-+.-. ....-+..+..+++|.+..|...|.+.+..+.
T Consensus 633 rk~~~~Sltel~~~~pr~~~~~~~wl~~li~~~~d~es~v~e~a~~~i~k~l 684 (1529)
T KOG0413|consen 633 RKTGADSLTELMLRDPRLFSLSSKWLHTLISMLNDTESDVTEHARKLIMKVL 684 (1529)
T ss_pred HHHHHHHHHHHHhhCchhhhhhHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 9999999998765422211 12233455667778888888888888655544
No 99
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.50 E-value=1.6e-05 Score=67.31 Aligned_cols=112 Identities=21% Similarity=0.191 Sum_probs=84.3
Q ss_pred chhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcH
Q 009632 215 QDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEA 294 (530)
Q Consensus 215 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~ 294 (530)
++.||..++.+++.++..++ ...+..+|.+...+.|+++.||..++.++..+... +.-.....++..+..++.|+++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~--~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d~ik~k~~l~~~~l~~l~D~~~ 77 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP--NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE-DMIKVKGQLFSRILKLLVDENP 77 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc--HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-CceeehhhhhHHHHHHHcCCCH
Confidence 36788888888888887776 34566788888888999999999988888887753 1112244566778888899999
Q ss_pred HHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhcc
Q 009632 295 EVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS 329 (530)
Q Consensus 295 ~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 329 (530)
+||..|...+..+....+++.+.+.+.+.+..+..
T Consensus 78 ~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~ 112 (178)
T PF12717_consen 78 EIRSLARSFFSELLKKRNPNIIYNNFPELISSLNN 112 (178)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhC
Confidence 99999999999998876666665666666655543
No 100
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.50 E-value=1.1e-06 Score=69.47 Aligned_cols=108 Identities=18% Similarity=0.081 Sum_probs=86.2
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhh---ChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh--
Q 009632 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL---GVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE-- 470 (530)
Q Consensus 396 ~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~---~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~-- 470 (530)
..+++.+.+++.+++|.+|..++.++..++... ........++|.+.+++.|+++.||..++.+++.++...+..
T Consensus 6 ~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~ 85 (120)
T cd00020 6 AGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKL 85 (120)
T ss_pred cCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHH
Confidence 357788888888889999999999999988642 222233478899999999999999999999999998754321
Q ss_pred -HHhhhhHHHHHhhccCCChHHHHHHHHHHHHHh
Q 009632 471 -WAMQHITPQVLEMINNPHYLYRMTILRAISLLA 503 (530)
Q Consensus 471 -~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~ 503 (530)
.....+++.+.+.+++++..+|..+++++.+++
T Consensus 86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 122457999999999999999999999999875
No 101
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=98.47 E-value=0.00011 Score=71.75 Aligned_cols=281 Identities=16% Similarity=0.172 Sum_probs=154.9
Q ss_pred ccchhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchh
Q 009632 138 WFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDS 217 (530)
Q Consensus 138 ~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~ 217 (530)
+...+..++++|...++.++ +..++-+..++.+|+|.+..||..|+..|..+++. ...+.+.+.+.|.+++..+++.
T Consensus 35 ~~k~K~Laaq~I~kffk~FP-~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~--~~~~v~kvaDvL~QlL~tdd~~ 111 (556)
T PF05918_consen 35 SPKEKRLAAQFIPKFFKHFP-DLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKD--NPEHVSKVADVLVQLLQTDDPV 111 (556)
T ss_dssp -HHHHHHHHHHHHHHHCC-G-GGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T----T-HHHHHHHHHHHTT---HH
T ss_pred CHHHHHHHHHHHHHHHhhCh-hhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHh--HHHHHhHHHHHHHHHHhcccHH
Confidence 45678888899988888765 46677889999999999999999999999999985 3456788999999999988887
Q ss_pred HHHHHHHHHHHHhhhcCchhhhhccHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHhCCccc------ccchHHHHHHhc
Q 009632 218 VRLLAVEGCAALGKLLEPQDCVAHILPVIVNFS--QDKSWRVRYMVANQLYELCEAVGPEPT------RMDLVPAYVRLL 289 (530)
Q Consensus 218 vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~--~d~~~~vr~~~~~~l~~l~~~~~~~~~------~~~l~~~l~~~l 289 (530)
.+..+-.+|..+...-++.. +-..+.... ...+..+|.-+.+.|..-...++.+.. .+.++..+...+
T Consensus 112 E~~~v~~sL~~ll~~d~k~t----L~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL 187 (556)
T PF05918_consen 112 ELDAVKNSLMSLLKQDPKGT----LTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVL 187 (556)
T ss_dssp HHHHHHHHHHHHHHH-HHHH----HHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCcHHH----HHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHH
Confidence 77777888887776654432 222222222 234567999988888655544444332 235667777788
Q ss_pred CCCcH-HH--HHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhcc-C-----CcH----HHHHHHHHHHHhhccccCHHHHH
Q 009632 290 RDNEA-EV--RIAAAGKVTKFCRILNPELAIQHILPCVKELSS-D-----SSQ----HVRSALASVIMGMAPLLGKDATI 356 (530)
Q Consensus 290 ~d~~~-~v--r~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-d-----~~~----~vr~~~~~~l~~l~~~~~~~~~~ 356 (530)
.|-.. +. -...+.++..+.. ..+....+.+++.+.+.+. | .+. +....+-.++..+........|.
T Consensus 188 ~DVTaeEF~l~m~lL~~lk~~~~-~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v~Sskfv 266 (556)
T PF05918_consen 188 QDVTAEEFELFMSLLKSLKIYGG-KQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGVSSSKFV 266 (556)
T ss_dssp TT--HHHHHHHHHHHHTSGG----GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB--HHHH
T ss_pred HhccHHHHHHHHHHHHhCccccc-cCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCCChHHHH
Confidence 77332 21 1112222222111 1112233556666654432 1 112 22233333444444444445555
Q ss_pred HhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcC------C----ChHHHHHHHHHHHHHHh
Q 009632 357 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED------R----HWRVRLAIIEYIPLLAS 426 (530)
Q Consensus 357 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~------~----~~~~R~~~~~~l~~l~~ 426 (530)
..+..-++..+.+-.+..|...+..++.++...|... ...++|.+...+.. . ++..-++.+.++..++.
T Consensus 267 ~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d-~~~~L~~i~~~L~~ymP~~~~~~~l~fs~vEcLL~afh~La~ 345 (556)
T PF05918_consen 267 NYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQD-ARQLLPSIFQLLKKYMPSKKTEPKLQFSYVECLLYAFHQLAR 345 (556)
T ss_dssp HHHHHHTCCCTT-----HHHHHHHHHHHHHTT----T-HHHHHHHHHHHHHTTS----------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCccc-HHHHHHHHHHHHHHhCCCCCCCCcccchHhhHHHHHHHHHhh
Confidence 5555555556666677889999999999998888654 34555555554421 1 34455555555555555
Q ss_pred h
Q 009632 427 Q 427 (530)
Q Consensus 427 ~ 427 (530)
.
T Consensus 346 k 346 (556)
T PF05918_consen 346 K 346 (556)
T ss_dssp T
T ss_pred h
Confidence 4
No 102
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=5.5e-05 Score=73.99 Aligned_cols=282 Identities=17% Similarity=0.098 Sum_probs=179.0
Q ss_pred HHhHhhhhcCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHH
Q 009632 145 ACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVE 224 (530)
Q Consensus 145 ~~~~l~~l~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~ 224 (530)
+...++.+...-+....+.++..+. +.+++.||+.+|..+|-..-.-.+ ..++..+.+.+..++.---++|..
T Consensus 399 alyAlGLIhA~hG~~~~~yL~~~Lk---~~~~e~v~hG~cLGlGLa~mGSa~----~eiYe~lKevLy~D~AvsGEAAgi 471 (929)
T KOG2062|consen 399 ALYALGLIHANHGRGITDYLLQQLK---TAENEVVRHGACLGLGLAGMGSAN----EEIYEKLKEVLYNDSAVSGEAAGI 471 (929)
T ss_pred hhhhhhccccCcCccHHHHHHHHHH---hccchhhhhhhhhhccchhccccc----HHHHHHHHHHHhccchhhhhHHHH
Confidence 3444444444444433333333333 234788999999988876543322 456677777777666656666666
Q ss_pred HHHHHhhhcCchhhhhccHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHH
Q 009632 225 GCAALGKLLEPQDCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGK 303 (530)
Q Consensus 225 ~l~~l~~~~~~~~~~~~~~~~l~~~~~d-~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~ 303 (530)
+++-+.-...... .+.-+.....+ .+.++.+..+-.|+-+.- |.+ +..-|++.+++.|.+|-.|...+.+
T Consensus 472 ~MGl~mlGt~~~e----aiedm~~Ya~ETQHeki~RGl~vGiaL~~y--grq---e~Ad~lI~el~~dkdpilR~~Gm~t 542 (929)
T KOG2062|consen 472 AMGLLMLGTANQE----AIEDMLTYAQETQHEKIIRGLAVGIALVVY--GRQ---EDADPLIKELLRDKDPILRYGGMYT 542 (929)
T ss_pred hhhhHhhCcCcHH----HHHHHHHHhhhhhHHHHHHHHHHhHHHHHh--hhh---hhhHHHHHHHhcCCchhhhhhhHHH
Confidence 7766654332221 23323333333 345566655554444332 221 3455778889999999999999888
Q ss_pred HHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcC-CChHHHHHHHHhh
Q 009632 304 VTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKD-EFPDVRLNIISKL 382 (530)
Q Consensus 304 l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l 382 (530)
+.--.-..|.......+++.- +.|.+..||+++...++-++-. .+..+|-...+|.+ -++.||..++-+|
T Consensus 543 ~alAy~GTgnnkair~lLh~a---VsD~nDDVrRaAVialGFVl~~------dp~~~~s~V~lLses~N~HVRyGaA~AL 613 (929)
T KOG2062|consen 543 LALAYVGTGNNKAIRRLLHVA---VSDVNDDVRRAAVIALGFVLFR------DPEQLPSTVSLLSESYNPHVRYGAAMAL 613 (929)
T ss_pred HHHHHhccCchhhHHHhhccc---ccccchHHHHHHHHHheeeEec------ChhhchHHHHHHhhhcChhhhhhHHHHH
Confidence 876555555554444444443 5789999999999998877532 12334556666654 4899999999999
Q ss_pred HHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhh--HHHHHHHHHHHHhcCCcHHHHHH
Q 009632 383 DQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKVYSIRDA 455 (530)
Q Consensus 383 ~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~d~~~~Vr~~ 455 (530)
+-.|..-|. +..+..|..+.+|+..-||+.|+-+++.+.-...... -...+...+.+.+.|+...+-..
T Consensus 614 GIaCAGtG~----~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dKhEd~~aK 684 (929)
T KOG2062|consen 614 GIACAGTGL----KEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDKHEDGMAK 684 (929)
T ss_pred hhhhcCCCc----HHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhhhhHHHHH
Confidence 999887774 3456667777889999999999999987765544322 12446666777778877654433
No 103
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.45 E-value=2e-06 Score=63.58 Aligned_cols=86 Identities=23% Similarity=0.345 Sum_probs=68.5
Q ss_pred HHHHHHHh-cCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhH
Q 009632 399 LPAIVELA-EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHIT 477 (530)
Q Consensus 399 ~~~l~~~~-~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~ 477 (530)
+|.|.+.+ +++++.+|..++.+++.+ + ....+|.+..+++|+++.||..|+.+++.+. ....+
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~----~----~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--------~~~~~ 64 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL----G----DPEAIPALIELLKDEDPMVRRAAARALGRIG--------DPEAI 64 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC----T----HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH--------HHHTH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc----C----CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC--------CHHHH
Confidence 35666766 888999999999999843 2 3367888999999999999999999999873 24578
Q ss_pred HHHHhhccC-CChHHHHHHHHHHH
Q 009632 478 PQVLEMINN-PHYLYRMTILRAIS 500 (530)
Q Consensus 478 ~~l~~~~~d-~~~~vr~~a~~~l~ 500 (530)
+.+.+++.+ ++..+|..|+++|+
T Consensus 65 ~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 65 PALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcHHHHHHHHhhcC
Confidence 888887766 56677999998875
No 104
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=0.0024 Score=63.83 Aligned_cols=417 Identities=16% Similarity=0.125 Sum_probs=217.0
Q ss_pred CCcCcHHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhccccccccccCCchHHHHHHHHHHhcccc-cCCC---c
Q 009632 6 EPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIP-YVGG---V 81 (530)
Q Consensus 6 ~~~~~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~~~~~l~~~~~-~~~~---~ 81 (530)
..++.+...+.+--++|+..|+.|.+.|.+.... ....-.++..+.+- ..++.+|.+++..+.+..+ .... .
T Consensus 2 ~~le~l~~~l~qTl~pdps~rk~aEr~L~~~e~q---~~y~l~lL~Lv~~~-~~d~~~r~aaav~fKN~iKr~W~~~~~~ 77 (960)
T KOG1992|consen 2 ANLETLANYLLQTLSPDPSVRKPAERALRSLEGQ---QNYPLLLLNLVANG-QQDPQIRVAAAVYFKNYIKRNWIPAEDS 77 (960)
T ss_pred ccHHHHHHHHHhcCCCCCccCchHHHHHHHhccC---CCchHHHHHHHhcc-CcChhHHHHHHHHHHHHHHhccCcCCCC
Confidence 3456677777777789999999999988765322 11111233333321 1267899999999987766 2221 1
Q ss_pred ------cchhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCc----cchhHHHHhHhhh
Q 009632 82 ------EHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEW----FTARVSACGLFHI 151 (530)
Q Consensus 82 ------~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~----~~~r~~~~~~l~~ 151 (530)
.....+-..+..+.-.....++..-.+++.-+++.--++. ++.++|.+..-....+ ..++..+..++..
T Consensus 78 ~~~i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~k-WptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr 156 (960)
T KOG1992|consen 78 PIKIIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDK-WPTLLPDLVARLSSGDFNVINGVLVTAHSIFKR 156 (960)
T ss_pred ccccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchh-hHHHHHHHHhhccccchHHHHHHHHHHHHHHHh
Confidence 1123333344444445557788888889999987544443 3445554444333332 2344445555544
Q ss_pred hcCCCChH-HH---HHHH--------HHHH---hhc--CCCChhHHHHHHHHHHHHHhhhc-------c---hhhHHHHH
Q 009632 152 AYPSAPDI-LK---TELR--------SIYT---QLC--QDDMPMVRRSAASNLGKFAATVE-------P---AHLKTDIM 204 (530)
Q Consensus 152 l~~~~~~~-~~---~~l~--------~~l~---~l~--~d~~~~vR~~a~~~l~~l~~~~~-------~---~~~~~~l~ 204 (530)
.-.....+ .+ +.++ .++. +++ .+.+...-......+--+++.+- + |...+..+
T Consensus 157 ~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM 236 (960)
T KOG1992|consen 157 YRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWM 236 (960)
T ss_pred cCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHH
Confidence 33322221 11 1111 1222 222 12222211111122222222111 1 22334455
Q ss_pred HHHHHhhc--------CCc-----hhHHHHHHHHHHHHhhhcCch--hhhhccHHHHHHhcCCCCHHHH-----HHHHHH
Q 009632 205 SIFEDLTQ--------DDQ-----DSVRLLAVEGCAALGKLLEPQ--DCVAHILPVIVNFSQDKSWRVR-----YMVANQ 264 (530)
Q Consensus 205 ~~l~~~~~--------d~~-----~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr-----~~~~~~ 264 (530)
+.+.+++. |++ ..+|....+.+.-.+..+.++ .+.+.++...-.++.+.++..| ..+.+.
T Consensus 237 ~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~F 316 (960)
T KOG1992|consen 237 GAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQF 316 (960)
T ss_pred HHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence 66666554 221 234555555555555444432 2334444444445444332222 222333
Q ss_pred HHHHHHH------hCC-----------------------cccccchHHHHHHhcCCCcH-HHHHHHHHHHHHHHHhhCHH
Q 009632 265 LYELCEA------VGP-----------------------EPTRMDLVPAYVRLLRDNEA-EVRIAAAGKVTKFCRILNPE 314 (530)
Q Consensus 265 l~~l~~~------~~~-----------------------~~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~~~~~~~~~ 314 (530)
|..+++. +.. +.+.+.-+.++.+-++-.+- .=|.+|+.-+..+++.+...
T Consensus 317 Lt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~ 396 (960)
T KOG1992|consen 317 LTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQ 396 (960)
T ss_pred HHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcch
Confidence 3333221 000 11112233444444443332 34778888888998887432
Q ss_pred HHHhhhhHhHhH----hcc--CCcHHHHHHHHHHHHhhcccc--------------C-HHHHHHhHHHHHHHhhcCCChH
Q 009632 315 LAIQHILPCVKE----LSS--DSSQHVRSALASVIMGMAPLL--------------G-KDATIEQLLPIFLSLLKDEFPD 373 (530)
Q Consensus 315 ~~~~~l~~~l~~----~~~--d~~~~vr~~~~~~l~~l~~~~--------------~-~~~~~~~l~~~l~~~l~d~~~~ 373 (530)
..+.+-..+.. ..+ +.+|+-+..++..+..++... + .+++...++|.+..-=..+.+-
T Consensus 397 -vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pi 475 (960)
T KOG1992|consen 397 -VTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPI 475 (960)
T ss_pred -hHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccc
Confidence 11222222333 333 457888888887777665321 1 2456677777666533345677
Q ss_pred HHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhC
Q 009632 374 VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG 429 (530)
Q Consensus 374 vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~ 429 (530)
++..+++.+-.+-+.+|.+.. -.++|.+.+.++.+.+-+-.-|..++..+....+
T Consensus 476 lka~aIKy~~~FR~ql~~~~l-m~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre 530 (960)
T KOG1992|consen 476 LKADAIKYIYTFRNQLGKEHL-MALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRE 530 (960)
T ss_pred hhhcccceeeeecccCChHHH-HHHHHHHHHhccCcchHHHHHHHHHHHhcccccc
Confidence 888888877777777777765 4689999999999888888888888887765433
No 105
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.44 E-value=2.9e-05 Score=68.87 Aligned_cols=180 Identities=14% Similarity=0.122 Sum_probs=123.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCC-cc-cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhcc
Q 009632 252 DKSWRVRYMVANQLYELCEAVGP-EP-TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS 329 (530)
Q Consensus 252 d~~~~vr~~~~~~l~~l~~~~~~-~~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 329 (530)
..++.+++.+..+++..+..-.. +. ..-..++.+..++.++++.+|..|+.++..++.........+..++.+.+...
T Consensus 24 t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~ 103 (254)
T PF04826_consen 24 TEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETV 103 (254)
T ss_pred CCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHh
Confidence 34566666666666654432111 11 11246788899999999999999999999887766555444555666654332
Q ss_pred C--CcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhh--chhHHHhhHHHHHHHH
Q 009632 330 D--SSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI--GIDLLSQSLLPAIVEL 405 (530)
Q Consensus 330 d--~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~--~~~~~~~~l~~~l~~~ 405 (530)
. .+..++.+.++.+..+.-.-.........+|.++.+|..++..+|..+++.+..+...- ..+.+..+.++.+..+
T Consensus 104 s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~L 183 (254)
T PF04826_consen 104 SSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSAQVLSSFLSL 183 (254)
T ss_pred cCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhccchhHHHHH
Confidence 2 35578888888888886443333445566788899999999999999999999887542 2333445566777777
Q ss_pred hcCC-ChHHHHHHHHHHHHHHhhhChh
Q 009632 406 AEDR-HWRVRLAIIEYIPLLASQLGVG 431 (530)
Q Consensus 406 ~~~~-~~~~R~~~~~~l~~l~~~~~~~ 431 (530)
+... +..+...++.++..+...++++
T Consensus 184 f~~~~~~~~l~~~l~~~~ni~~~~~~~ 210 (254)
T PF04826_consen 184 FNSSESKENLLRVLTFFENINENIKKE 210 (254)
T ss_pred HccCCccHHHHHHHHHHHHHHHhhCcc
Confidence 7665 5677888888888888777654
No 106
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.44 E-value=0.00011 Score=71.59 Aligned_cols=166 Identities=19% Similarity=0.166 Sum_probs=70.7
Q ss_pred HHHHHHhhcCCchhHHHHHHHHHHHHhhhcC--chhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccch
Q 009632 204 MSIFEDLTQDDQDSVRLLAVEGCAALGKLLE--PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDL 281 (530)
Q Consensus 204 ~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l 281 (530)
+..+.+....++..||-.+...+..+....+ ++...+.+...+..-+.|..+.||..|..+|..+..--+++ ...+
T Consensus 87 f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de--e~~v 164 (892)
T KOG2025|consen 87 FYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE--ECPV 164 (892)
T ss_pred HHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC--cccH
Confidence 3333333444444455555555554444222 12333444444444445555555555555554443211111 1122
Q ss_pred HHHHHHhc-CCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHH-hhccccCHHHHHHhH
Q 009632 282 VPAYVRLL-RDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIM-GMAPLLGKDATIEQL 359 (530)
Q Consensus 282 ~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~-~l~~~~~~~~~~~~l 359 (530)
...+..++ +|++++||.+++.++..- +.-.|.+.+-..|-+.-+|..+.+.+. .+ ... ....++-
T Consensus 165 ~n~l~~liqnDpS~EVRRaaLsnI~vd----------nsTlp~IveRarDV~~anRrlvY~r~lpki-d~r--~lsi~kr 231 (892)
T KOG2025|consen 165 VNLLKDLIQNDPSDEVRRAALSNISVD----------NSTLPCIVERARDVSGANRRLVYERCLPKI-DLR--SLSIDKR 231 (892)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHhhccC----------cccchhHHHHhhhhhHHHHHHHHHHhhhhh-hhh--hhhHHHH
Confidence 33333333 455666666555543321 233455555555555555544433221 11 100 0011233
Q ss_pred HHHHHHhhcCCChHHHHHHHHhhHH
Q 009632 360 LPIFLSLLKDEFPDVRLNIISKLDQ 384 (530)
Q Consensus 360 ~~~l~~~l~d~~~~vr~~a~~~l~~ 384 (530)
.-++...|.|.+..||.++.+.+..
T Consensus 232 v~LlewgLnDRe~sVk~A~~d~il~ 256 (892)
T KOG2025|consen 232 VLLLEWGLNDREFSVKGALVDAILS 256 (892)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHH
Confidence 3444455556666666655555433
No 107
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=98.43 E-value=0.00013 Score=72.56 Aligned_cols=411 Identities=14% Similarity=0.075 Sum_probs=219.9
Q ss_pred chhHHHhhhcccchHHHHHHHHHHHHHHhhcCh-hhhhhhHHHHHHHHhcCC-ccchhHHHHhHhhhhcCCCChHHHHHH
Q 009632 87 LLPPLETLCTVEETCVRDKAVESLCRIGSQMRE-SDLVDWYIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPDILKTEL 164 (530)
Q Consensus 87 l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~l~~~~-~~~~r~~~~~~l~~l~~~~~~~~~~~l 164 (530)
+-|+|..+ .+++..||.+.++.+..+-+.+.. ..+.=-+..++...-+.+ +..+|..+...+....+.++.+.+.++
T Consensus 25 L~plLlkl-~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~Rl~~~e~~~l 103 (501)
T PF13001_consen 25 LPPLLLKL-ASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFDRLDDEERREL 103 (501)
T ss_pred HHHHHHHh-cCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhhcCCHHHHHHH
Confidence 33444444 456778999988888888877665 222222445555555555 567888888888888888888888888
Q ss_pred HHHHHhhcCCCChh---HHHHHHHHHHHHHhhhcch-----hhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHh------
Q 009632 165 RSIYTQLCQDDMPM---VRRSAASNLGKFAATVEPA-----HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALG------ 230 (530)
Q Consensus 165 ~~~l~~l~~d~~~~---vR~~a~~~l~~l~~~~~~~-----~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~------ 230 (530)
+|.+++.++..... .....+..+..+++..... ......-+.-...+.|. ............+.
T Consensus 104 lP~ll~~is~~~~~~~~~~~~~~~~f~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~l~~~~~~~~~l~~~~ 181 (501)
T PF13001_consen 104 LPSLLKGISKKPKQHQDSFLRLARLFNILLKLLPDWKEPPRGSKEDEKFRDSLGLSDF--CDDVFLAPWFSKFLLLQPNR 181 (501)
T ss_pred HHHHHHhhccCchhhhHHHHHHHHHHHHHhhcCCccccccccchhhhcHHHHHhhcch--HHHHHcchhhcccccccccc
Confidence 88888877632211 1111222222222222110 00000000000011110 00000000000000
Q ss_pred ----hhcCchhhhhccHHH--HHHhcCCCC-HHHHHHHHHHHHHHHHHhCCccc-ccchHHHHHHhcCCCcHHHHHHHHH
Q 009632 231 ----KLLEPQDCVAHILPV--IVNFSQDKS-WRVRYMVANQLYELCEAVGPEPT-RMDLVPAYVRLLRDNEAEVRIAAAG 302 (530)
Q Consensus 231 ----~~~~~~~~~~~~~~~--l~~~~~d~~-~~vr~~~~~~l~~l~~~~~~~~~-~~~l~~~l~~~l~d~~~~vr~~a~~ 302 (530)
..+... ....+.. ......... ..-+....+.=-.+.+.+..... .+..++.++-.-.|+..+|...|-.
T Consensus 182 ~~~~pgl~~~--~~~~ls~~~~~r~~~~~~~~~~~~~L~~~K~~il~fL~sg~f~d~~~~~~~liAsad~~~~V~~~ae~ 259 (501)
T PF13001_consen 182 AYACPGLSPA--DPPGLSLSSAKRIEGKGPTFPSRENLTERKLAILKFLASGFFPDEERFPPLLIASADSNSSVSDRAED 259 (501)
T ss_pred ccCCCCCCCC--CCCCCCHHhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhcCCCcHhHHhheeeEEeCCcchHHHHHHH
Confidence 000000 0001111 111111110 00111121111222222222222 2245556666667888899999988
Q ss_pred HHHHHHHhhCHHHHHhhhhHhHh--Hhcc-----CCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCC--ChH
Q 009632 303 KVTKFCRILNPELAIQHILPCVK--ELSS-----DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDE--FPD 373 (530)
Q Consensus 303 ~l~~~~~~~~~~~~~~~l~~~l~--~~~~-----d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~--~~~ 373 (530)
.|..+...+....+...++..+. .... --++.+|..++..+..= .......+.++.++...+..+ +..
T Consensus 260 ~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS---~~Aa~~~~~~~~i~~~~l~~~~~~~k 336 (501)
T PF13001_consen 260 LLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKS---VIAATSFPNILQIVFDGLYSDNTNSK 336 (501)
T ss_pred HHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHh---HHHHhCCccHHHHHhccccCCccccc
Confidence 88888877777666677777766 2111 13457777766665542 111223355667777777776 667
Q ss_pred HHHHHHHhh---HHhhhhhchhHH---HhhHHHHHHHHhc--------CCChHHHHHHHHHHHHHHhhhChhhHH-HHHH
Q 009632 374 VRLNIISKL---DQVNQVIGIDLL---SQSLLPAIVELAE--------DRHWRVRLAIIEYIPLLASQLGVGFFD-DKLG 438 (530)
Q Consensus 374 vr~~a~~~l---~~l~~~~~~~~~---~~~l~~~l~~~~~--------~~~~~~R~~~~~~l~~l~~~~~~~~~~-~~~~ 438 (530)
+|..++..+ ......++...+ .+.+...+..... ..+...|..+.+++|.+++....-+.. -.++
T Consensus 337 lk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li 416 (501)
T PF13001_consen 337 LKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKDLSLI 416 (501)
T ss_pred cchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCcccccccHHHH
Confidence 888888888 777666665432 2233333333332 235789999999999999876654322 3466
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHH-----hhhhHHHHH-hhccCCChHHHHHHHHHHHHHhhh
Q 009632 439 ALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA-----MQHITPQVL-EMINNPHYLYRMTILRAISLLAPV 505 (530)
Q Consensus 439 ~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~-----~~~i~~~l~-~~~~d~~~~vr~~a~~~l~~i~~~ 505 (530)
..++.-+.++..++|.+.-++|+.+...+..... ....+..+. ....+....+|-.|+++...+.+.
T Consensus 417 ~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~R~~avk~an~~fpf 489 (501)
T PF13001_consen 417 EFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVRSCRYAAVKYANACFPF 489 (501)
T ss_pred HHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhCCc
Confidence 6677777899999999999999999988854321 111222222 233455667888888888877653
No 108
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=98.43 E-value=7.4e-05 Score=64.18 Aligned_cols=91 Identities=18% Similarity=0.158 Sum_probs=68.6
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHHHHhChhHHhh
Q 009632 397 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQD--KVYSIRDAAANNLKRLAEEFGPEWAMQ 474 (530)
Q Consensus 397 ~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d--~~~~Vr~~a~~~l~~l~~~~~~~~~~~ 474 (530)
.-+..+.+.+.+++...|..+..++|++-. +.-+|.+.+.|.| .++.||-.|+++||.|+. +
T Consensus 187 eaI~al~~~l~~~SalfrhEvAfVfGQl~s--------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--------e 250 (289)
T KOG0567|consen 187 EAINALIDGLADDSALFRHEVAFVFGQLQS--------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD--------E 250 (289)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHhhccc--------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--------H
Confidence 344556666777788899998888888743 2345666666655 557899999999998762 4
Q ss_pred hhHHHHHhhccCCChHHHHHHHHHHHHHh
Q 009632 475 HITPQVLEMINNPHYLYRMTILRAISLLA 503 (530)
Q Consensus 475 ~i~~~l~~~~~d~~~~vr~~a~~~l~~i~ 503 (530)
..++.|.+.++|+..-||+.+.-++....
T Consensus 251 ~~~~vL~e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 251 DCVEVLKEYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 56888888999999999999888887654
No 109
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.42 E-value=2e-06 Score=63.55 Aligned_cols=85 Identities=31% Similarity=0.403 Sum_probs=58.3
Q ss_pred HHHHHhh-cCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHH
Q 009632 361 PIFLSLL-KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGA 439 (530)
Q Consensus 361 ~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~ 439 (530)
|.+.+.+ +|+++.+|..++..++.+.. +..+|.+..+++|+++.+|..++.+++.+. .+..++
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--------~~~~~~ 65 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELGD--------PEAIPALIELLKDEDPMVRRAAARALGRIG--------DPEAIP 65 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCTH--------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH--------HHHTHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCC--------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC--------CHHHHH
Confidence 5566666 77778888888777775422 356777777778888888888888887763 234566
Q ss_pred HHHHHhcC-CcHHHHHHHHHHHH
Q 009632 440 LCMQWLQD-KVYSIRDAAANNLK 461 (530)
Q Consensus 440 ~l~~~l~d-~~~~Vr~~a~~~l~ 461 (530)
.+.+.+.| +...||..|+.+||
T Consensus 66 ~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 66 ALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcHHHHHHHHhhcC
Confidence 67676655 44556887777765
No 110
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.42 E-value=0.0015 Score=66.60 Aligned_cols=370 Identities=16% Similarity=0.146 Sum_probs=207.0
Q ss_pred hcccchHHHHHHHHHHHHHHhhcChh--hhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCC-hH--HHHHHHHHHH
Q 009632 95 CTVEETCVRDKAVESLCRIGSQMRES--DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAP-DI--LKTELRSIYT 169 (530)
Q Consensus 95 ~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~-~~--~~~~l~~~l~ 169 (530)
+...+.-.| .++..|.+++....-+ .....+++.+..+++.++......+..++..+.-... +. ....+++.+.
T Consensus 259 ~~kQeqLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~ 337 (708)
T PF05804_consen 259 IRKQEQLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLL 337 (708)
T ss_pred HHHHHHHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHH
Confidence 333333333 5566677777654332 2344467777777777777777777788777664422 11 3456888999
Q ss_pred hhcCCCChhHHHHHHHHHHHHHhhhc--chhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc-h-hhhhccHHH
Q 009632 170 QLCQDDMPMVRRSAASNLGKFAATVE--PAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP-Q-DCVAHILPV 245 (530)
Q Consensus 170 ~l~~d~~~~vR~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-~-~~~~~~~~~ 245 (530)
+++..++..++..++..|.+++..-. .......++|.+..++.|++ .|..++..+-.++..-.. . -.....+|.
T Consensus 338 kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~ 415 (708)
T PF05804_consen 338 KLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQ 415 (708)
T ss_pred HHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHH
Confidence 99998999999999999999875322 23334458889999998764 556667666666542111 1 112346777
Q ss_pred HHHhc-CCCCHHHHHHHHHHHHHHHHHhCC--cccccchHHHHHH-hcCCCcHHHHHHHHHHHHHHHHhhCHH--HHHhh
Q 009632 246 IVNFS-QDKSWRVRYMVANQLYELCEAVGP--EPTRMDLVPAYVR-LLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQH 319 (530)
Q Consensus 246 l~~~~-~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~ 319 (530)
+.+++ ..++.++...++..+.+++..-.. ......-++.++. .++..++- .++.+..++..-|+. .+.+.
T Consensus 416 L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~l----LlKlIRNiS~h~~~~k~~f~~~ 491 (708)
T PF05804_consen 416 LMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPL----LLKLIRNISQHDGPLKELFVDF 491 (708)
T ss_pred HHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHH----HHHHHHHHHhcCchHHHHHHHH
Confidence 76653 334555555444444443321100 0001122333333 33333322 234444444443322 12222
Q ss_pred hhHhHhHhccCCcHHHHHHHHHHHHhhc-cccCHHHHH--HhHHHHHHHhhcCC--ChHHHHHHHHhhHHhhhhhchhH-
Q 009632 320 ILPCVKELSSDSSQHVRSALASVIMGMA-PLLGKDATI--EQLLPIFLSLLKDE--FPDVRLNIISKLDQVNQVIGIDL- 393 (530)
Q Consensus 320 l~~~l~~~~~d~~~~vr~~~~~~l~~l~-~~~~~~~~~--~~l~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~~~- 393 (530)
+.+.+..+....++.....++.++..+. ...+...+. ..++|.+...|..+ ..++...++-.++.++..-....
T Consensus 492 i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~l 571 (708)
T PF05804_consen 492 IGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPL 571 (708)
T ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHH
Confidence 2222222222334444444444444332 112223333 26899999999765 34677777777777764322111
Q ss_pred H-HhhHHHHHHHHhcCC--ChHHHHHHHHHHHHHHhhh-ChhhH--HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh
Q 009632 394 L-SQSLLPAIVELAEDR--HWRVRLAIIEYIPLLASQL-GVGFF--DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF 467 (530)
Q Consensus 394 ~-~~~l~~~l~~~~~~~--~~~~R~~~~~~l~~l~~~~-~~~~~--~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~ 467 (530)
+ ...+++.+..+++.. +..+-...+.++..+...- +.+.+ ...+..++..+++|++..||..+-.+|..++..
T Consensus 572 L~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~- 650 (708)
T PF05804_consen 572 LAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEY- 650 (708)
T ss_pred HHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHh-
Confidence 1 246778888877654 3555555556665554431 12222 134778899999999999999999999877654
Q ss_pred ChhHH
Q 009632 468 GPEWA 472 (530)
Q Consensus 468 ~~~~~ 472 (530)
.++|.
T Consensus 651 d~~w~ 655 (708)
T PF05804_consen 651 DEEWA 655 (708)
T ss_pred CHHHH
Confidence 44443
No 111
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=0.00032 Score=65.76 Aligned_cols=258 Identities=17% Similarity=0.095 Sum_probs=157.7
Q ss_pred hccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcc--cccc-hHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHH
Q 009632 240 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRMD-LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA 316 (530)
Q Consensus 240 ~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~-l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~ 316 (530)
..++..+.+-..|++..+|..++..|++.+...+.+. .... +..++..+..+.+.+|...++++|..+.+......+
T Consensus 257 ~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l 336 (533)
T KOG2032|consen 257 GSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDL 336 (533)
T ss_pred HHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcch
Confidence 3455556666778888999999999999998754432 1233 444445555666789999999999998887666554
Q ss_pred HhhhhHhH---hHhccCCcHHHHHHHHHHHHhhccccC---HHHHHHhHHHHHH---HhhcCCChHHHHHHHHhhHHhhh
Q 009632 317 IQHILPCV---KELSSDSSQHVRSALASVIMGMAPLLG---KDATIEQLLPIFL---SLLKDEFPDVRLNIISKLDQVNQ 387 (530)
Q Consensus 317 ~~~l~~~l---~~~~~d~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~---~~l~d~~~~vr~~a~~~l~~l~~ 387 (530)
...+++.- ..+..+.+..+|.++...++.++...| +++|.+++..-+. --++|+++.|-.+.-..+.....
T Consensus 337 ~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~p 416 (533)
T KOG2032|consen 337 ESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCYP 416 (533)
T ss_pred hhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcCc
Confidence 44444443 455678889999999999998887765 3455555443333 33678888776655444444333
Q ss_pred hhchhHHHhhHHHHHHHHhcCCCh-HHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Q 009632 388 VIGIDLLSQSLLPAIVELAEDRHW-RVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE 466 (530)
Q Consensus 388 ~~~~~~~~~~l~~~l~~~~~~~~~-~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 466 (530)
.++.+ .+-..+.+.+ +..- +.+.-.-.++-.+..... + ..-.+......+++...++||.++...-+.....
T Consensus 417 ~l~rk----e~~~~~q~~l-d~~~~~~q~Fyn~~c~~L~~i~~-d-~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~ 489 (533)
T KOG2032|consen 417 NLVRK----ELYHLFQESL-DTDMARFQAFYNQWCIQLNHIHP-D-ILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDS 489 (533)
T ss_pred hhHHH----HHHHHHhhhh-HHhHHHHHHHHHHHHHHHhhhCH-H-HHHHHHHhchhheecchHHHHHHHHHHHHHHHHH
Confidence 33322 2222222222 2111 122212122112211110 0 0111223334456666678999998887777766
Q ss_pred hChhH----HhhhhHHHHHhhccCCChHHHHHHHHHHHHHhh
Q 009632 467 FGPEW----AMQHITPQVLEMINNPHYLYRMTILRAISLLAP 504 (530)
Q Consensus 467 ~~~~~----~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~ 504 (530)
..+.. ....+...+..+..||-.+++..+..+++.+..
T Consensus 490 l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 490 LVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred hHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 54432 235677788888899999999999999987653
No 112
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.40 E-value=4e-05 Score=64.84 Aligned_cols=109 Identities=17% Similarity=0.180 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChH
Q 009632 333 QHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWR 412 (530)
Q Consensus 333 ~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~ 412 (530)
+.+|..++.+++.++...+ ...+...|.+..+|+|+++.||..|+..+..+... +.-.+...++..+...+.|+++.
T Consensus 2 ~~vR~n~i~~l~DL~~r~~--~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d~ik~k~~l~~~~l~~l~D~~~~ 78 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYP--NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE-DMIKVKGQLFSRILKLLVDENPE 78 (178)
T ss_pred HHHHHHHHHHHHHHHHhCc--HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-CceeehhhhhHHHHHHHcCCCHH
Confidence 4566666666666655443 33455566677777777777777777777666542 11222344555566666777777
Q ss_pred HHHHHHHHHHHHHhhhChhhHHHHHHHHHHHH
Q 009632 413 VRLAIIEYIPLLASQLGVGFFDDKLGALCMQW 444 (530)
Q Consensus 413 ~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~ 444 (530)
+|..|..++..+....++..+.+.+.+.+..+
T Consensus 79 Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l 110 (178)
T PF12717_consen 79 IRSLARSFFSELLKKRNPNIIYNNFPELISSL 110 (178)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 77777777777776655555555555544443
No 113
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=0.001 Score=66.57 Aligned_cols=202 Identities=18% Similarity=0.175 Sum_probs=137.2
Q ss_pred hHHHhhhcccchHHHHHHHHHHHHHHhhcChhhh----hhhHHHHHHHHhcCC-ccchhHHHHhHhhhhcCCCChH----
Q 009632 89 PPLETLCTVEETCVRDKAVESLCRIGSQMRESDL----VDWYIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPDI---- 159 (530)
Q Consensus 89 ~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~----~~~l~~~l~~l~~~~-~~~~r~~~~~~l~~l~~~~~~~---- 159 (530)
.+|..+-...|+..+-.|+.-+.+.......+.+ .+.+.|.+..+++++ ++.+...||+++..+++.++..
T Consensus 171 kLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~v 250 (1051)
T KOG0168|consen 171 KLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIV 250 (1051)
T ss_pred HHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhhee
Confidence 3455555555677666666655555544444333 234788888888877 7888889999999999888775
Q ss_pred HHHHHHHHHHh-hcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchh-
Q 009632 160 LKTELRSIYTQ-LCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD- 237 (530)
Q Consensus 160 ~~~~l~~~l~~-l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~- 237 (530)
+....+|.|.+ ++.=+--.|.+.++++|..+...-+.......-+...+.++.-=.-.++..|+.+..+.++.+.++.
T Consensus 251 V~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f 330 (1051)
T KOG0168|consen 251 VDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEF 330 (1051)
T ss_pred ecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 33456776664 4444556799999999999998777654433323333333222223567788888899998887753
Q ss_pred -hhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcc------cccchHHHHHHhcC
Q 009632 238 -CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP------TRMDLVPAYVRLLR 290 (530)
Q Consensus 238 -~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~------~~~~l~~~l~~~l~ 290 (530)
+.-..+|.+..+++..+.+.-..++-++..++..+.... ....++....+++.
T Consensus 331 ~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLls 390 (1051)
T KOG0168|consen 331 HFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLS 390 (1051)
T ss_pred hHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHh
Confidence 456689999999998888888899999999988775432 12345555555553
No 114
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=98.33 E-value=0.00058 Score=66.83 Aligned_cols=266 Identities=17% Similarity=0.175 Sum_probs=149.2
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHH
Q 009632 167 IYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI 246 (530)
Q Consensus 167 ~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l 246 (530)
.++...+ .+..+++.|++.++.+.+.++.- .+..++.+..++.|++..||..|++.|..+++.-+ .+...+...|
T Consensus 27 ~il~~~k-g~~k~K~Laaq~I~kffk~FP~l--~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~--~~v~kvaDvL 101 (556)
T PF05918_consen 27 EILDGVK-GSPKEKRLAAQFIPKFFKHFPDL--QEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNP--EHVSKVADVL 101 (556)
T ss_dssp HHHHGGG-S-HHHHHHHHHHHHHHHCC-GGG--HHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T----T-HHHHHHHH
T ss_pred HHHHHcc-CCHHHHHHHHHHHHHHHhhChhh--HHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHH--HHHhHHHHHH
Confidence 3344444 46889999999999999988763 45788899999999999999999999999998643 4567788999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhc--CCCcHHHHHHHHHHHHHHHHhhCH------HHHHh
Q 009632 247 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLL--RDNEAEVRIAAAGKVTKFCRILNP------ELAIQ 318 (530)
Q Consensus 247 ~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l--~d~~~~vr~~a~~~l~~~~~~~~~------~~~~~ 318 (530)
.++++.+++..+..+-++|..+...-. ...+-..|.+.. ...+..+|..+++.+..-...++. ++...
T Consensus 102 ~QlL~tdd~~E~~~v~~sL~~ll~~d~----k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~ 177 (556)
T PF05918_consen 102 VQLLQTDDPVELDAVKNSLMSLLKQDP----KGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEE 177 (556)
T ss_dssp HHHTT---HHHHHHHHHHHHHHHHH-H----HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHH
T ss_pred HHHHhcccHHHHHHHHHHHHHHHhcCc----HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHH
Confidence 999998888777777777777765411 123444444444 244567999998888654444332 34445
Q ss_pred hhhHhHhHhccCCcHHHHHHHHHHHHhhccc--cCHHHHHHhHHHHHHHhhc-C-----CChHH----HHHHHHhhHHhh
Q 009632 319 HILPCVKELSSDSSQHVRSALASVIMGMAPL--LGKDATIEQLLPIFLSLLK-D-----EFPDV----RLNIISKLDQVN 386 (530)
Q Consensus 319 ~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~--~~~~~~~~~l~~~l~~~l~-d-----~~~~v----r~~a~~~l~~l~ 386 (530)
.++..+.+.++|-...-=..+...+..+-.. .....-.+.+++++..... | .+.+. ..++-.++.-+.
T Consensus 178 ~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs 257 (556)
T PF05918_consen 178 FIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFS 257 (556)
T ss_dssp HHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-B
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhc
Confidence 6677777777774432222233333333221 1123334567777765442 1 12222 222222333333
Q ss_pred hhhchhH----HHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhc
Q 009632 387 QVIGIDL----LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ 446 (530)
Q Consensus 387 ~~~~~~~----~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~ 446 (530)
....... +.+.++|.+..+ ....|...+..+..++...+... ...++|.+...+.
T Consensus 258 ~~v~Sskfv~y~~~kvlP~l~~l----~e~~kl~lLk~lAE~s~~~~~~d-~~~~L~~i~~~L~ 316 (556)
T PF05918_consen 258 RGVSSSKFVNYMCEKVLPKLSDL----PEDRKLDLLKLLAELSPFCGAQD-ARQLLPSIFQLLK 316 (556)
T ss_dssp TTB--HHHHHHHHHHTCCCTT---------HHHHHHHHHHHHHTT----T-HHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHhcCChhhC----ChHHHHHHHHHHHHHcCCCCccc-HHHHHHHHHHHHH
Confidence 3222222 234455544433 45678888999999999888655 5556677766664
No 115
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.33 E-value=0.00011 Score=65.32 Aligned_cols=212 Identities=9% Similarity=0.098 Sum_probs=143.3
Q ss_pred HHHHHHhcC-CCcHHHHHHHHHHHHHHHHhhCHHHHH--hhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHh
Q 009632 282 VPAYVRLLR-DNEAEVRIAAAGKVTKFCRILNPELAI--QHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQ 358 (530)
Q Consensus 282 ~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~~~~--~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ 358 (530)
+..++.+++ ..+|.+++.+.-+++..+..-...... -..++.+..++.++++.+|..++.++..++.........+.
T Consensus 14 l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~ 93 (254)
T PF04826_consen 14 LQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKM 93 (254)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHH
Confidence 455666666 456899999999999876543333222 35688888999999999999999999988765443333333
Q ss_pred HHHHHHHh-hcC-CChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhC--hhhHH
Q 009632 359 LLPIFLSL-LKD-EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--VGFFD 434 (530)
Q Consensus 359 l~~~l~~~-l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~--~~~~~ 434 (530)
.++.+... ..+ -+..++.+++..|.++.-.-....+....+|.+..++...+..+|..++..+..++..-. .+.+.
T Consensus 94 ~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~ 173 (254)
T PF04826_consen 94 YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLS 173 (254)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHh
Confidence 34444433 333 367889999999988864433333445578888888999999999999999999986432 23344
Q ss_pred HHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhChhHH------------------hhhhHHHHHhhccCCChHHHH
Q 009632 435 DKLGALCMQWLQDK-VYSIRDAAANNLKRLAEEFGPEWA------------------MQHITPQVLEMINNPHYLYRM 493 (530)
Q Consensus 435 ~~~~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~~~------------------~~~i~~~l~~~~~d~~~~vr~ 493 (530)
.+..+.++.+++.+ ..++-..++..+..|...++++.. ...+-..+..+..+++.+||.
T Consensus 174 ~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h~d~ev~~ 251 (254)
T PF04826_consen 174 AQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQALANHPDPEVKE 251 (254)
T ss_pred ccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHHHHcCCCHHHhh
Confidence 45666777777765 567888888888888776654310 023444555556666776665
No 116
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=9.9e-05 Score=73.60 Aligned_cols=214 Identities=17% Similarity=0.212 Sum_probs=144.5
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHhCC--cccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhH
Q 009632 247 VNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCV 324 (530)
Q Consensus 247 ~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l 324 (530)
...+.|+...+|..+...+..+.+.-.+ -...+.++..++..++|.++-|-.+|++.+..+++.++.+. .+.+....
T Consensus 733 i~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~i-l~dL~e~Y 811 (982)
T KOG4653|consen 733 ISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDI-LPDLSEEY 811 (982)
T ss_pred HHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhh-HHHHHHHH
Confidence 3345677778999999988888874322 22346789999999999999999999999999998755432 23333333
Q ss_pred hHhccCCcHHHHHHHHHHHHhhccccCH--HHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhc---hhHHHhhHH
Q 009632 325 KELSSDSSQHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---IDLLSQSLL 399 (530)
Q Consensus 325 ~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~ 399 (530)
.+.-+......|..+-+++..++...|. ..+...+...++..++|++..-|..++.+++.++.... .+++.+ ++
T Consensus 812 ~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~e-v~ 890 (982)
T KOG4653|consen 812 LSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHE-VL 890 (982)
T ss_pred HhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHH-HH
Confidence 2222222234444455778887777775 23456778888888899988999999999999997653 454433 33
Q ss_pred HHHHH-HhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHH-----------HHHh-cCCcHHHHHHHHHHHHHHHHH
Q 009632 400 PAIVE-LAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALC-----------MQWL-QDKVYSIRDAAANNLKRLAEE 466 (530)
Q Consensus 400 ~~l~~-~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l-----------~~~l-~d~~~~Vr~~a~~~l~~l~~~ 466 (530)
..+.. ...|....+|++|++.+..+....|.+ ++|++ .+.. .+++..+|..|+.|+..+-..
T Consensus 891 ~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~d-----lLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a~ 965 (982)
T KOG4653|consen 891 QLILSLETTDGSVLVRRAAVHLLAELLNGTGED-----LLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQAA 965 (982)
T ss_pred HHHHHHHccCCchhhHHHHHHHHHHHHhccchh-----hHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Confidence 33333 345778899999999999998877743 33333 2222 245556777777777665544
Q ss_pred h
Q 009632 467 F 467 (530)
Q Consensus 467 ~ 467 (530)
+
T Consensus 966 l 966 (982)
T KOG4653|consen 966 L 966 (982)
T ss_pred H
Confidence 3
No 117
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=98.32 E-value=1.5e-05 Score=68.35 Aligned_cols=110 Identities=20% Similarity=0.226 Sum_probs=62.5
Q ss_pred cChhHHHHHHHhhcHHHHHHhhChHhhhhcccccccc-ccCCchHHHHHHHHHHhcccccCCCccchhcchhHHHhhh--
Q 009632 19 KNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLC-- 95 (530)
Q Consensus 19 ~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~-- 95 (530)
+++.-..|..|+-.|..+. ++.. +..+.. ..|++..-.-.++.+||.+ ++.+.. |++...+
T Consensus 15 ~s~~l~~r~rALf~Lr~l~---~~~~-----i~~i~ka~~d~s~llkhe~ay~LgQ~----~~~~Av----~~l~~vl~d 78 (289)
T KOG0567|consen 15 KSQPLQNRFRALFNLRNLL---GPAA-----IKAITKAFIDDSALLKHELAYVLGQM----QDEDAV----PVLVEVLLD 78 (289)
T ss_pred ccHHHHHHHHHHHhhhccC---ChHH-----HHHHHHhcccchhhhccchhhhhhhh----ccchhh----HHHHHHhcc
Confidence 4566667777776665442 2221 222222 2233334444566666655 222222 3333333
Q ss_pred cccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhh
Q 009632 96 TVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIA 152 (530)
Q Consensus 96 ~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l 152 (530)
.+..+-||+.|.++|+.+.. ..+.+.+.+..+|+-..+|.++...+..+
T Consensus 79 esq~pmvRhEAaealga~~~--------~~~~~~l~k~~~dp~~~v~ETc~lAi~rl 127 (289)
T KOG0567|consen 79 ESQEPMVRHEAAEALGAIGD--------PESLEILTKYIKDPCKEVRETCELAIKRL 127 (289)
T ss_pred cccchHHHHHHHHHHHhhcc--------hhhHHHHHHHhcCCccccchHHHHHHHHH
Confidence 34578899999999999962 23566777777777777887755555443
No 118
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.30 E-value=3.5e-06 Score=66.56 Aligned_cols=107 Identities=18% Similarity=0.100 Sum_probs=76.9
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc---hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc--hh
Q 009632 163 ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP--QD 237 (530)
Q Consensus 163 ~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~~ 237 (530)
.+++.+.+++.+.++.+|..++.+++.++...+. ......++|.+.+++.|+++.++..++.++..++...+. ..
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 86 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLI 86 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHH
Confidence 3667777888888899999999999998875332 222336788888888888888898888888888775432 11
Q ss_pred -hhhccHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 009632 238 -CVAHILPVIVNFSQDKSWRVRYMVANQLYELC 269 (530)
Q Consensus 238 -~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~ 269 (530)
....+++.+.+.+++.+..+|..++.++.+++
T Consensus 87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 12346777777777777777777777776654
No 119
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=0.0014 Score=61.62 Aligned_cols=167 Identities=16% Similarity=0.083 Sum_probs=106.7
Q ss_pred ccchhHHHHhHhhhhcCC-CCh--HHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchh--hHHHHHHHHH-Hhh
Q 009632 138 WFTARVSACGLFHIAYPS-APD--ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH--LKTDIMSIFE-DLT 211 (530)
Q Consensus 138 ~~~~r~~~~~~l~~l~~~-~~~--~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~~~l~-~~~ 211 (530)
.+..|......+..+... .-+ .....++..+..-..|++..+|..|+..|++.+..++.+. ..+.++..++ .+.
T Consensus 230 ~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~ 309 (533)
T KOG2032|consen 230 KENGRITDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLY 309 (533)
T ss_pred cccchHHHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHh
Confidence 345566555555544322 111 1345555556666779999999999999999998866643 3344555544 445
Q ss_pred cCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHH---HHhcCCCCHHHHHHHHHHHHHHHHHhCCc---ccccchHH--
Q 009632 212 QDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI---VNFSQDKSWRVRYMVANQLYELCEAVGPE---PTRMDLVP-- 283 (530)
Q Consensus 212 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l---~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~-- 283 (530)
.+.+.+|...++.+|..+...........++++.- ..+..|.+..+|.++...++.++...|.. .+.+.+..
T Consensus 310 D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~ 389 (533)
T KOG2032|consen 310 DDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRL 389 (533)
T ss_pred cCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhcc
Confidence 55577899999999998888776655555555554 44677888889999999999998887643 22222221
Q ss_pred -HHHHhcCCCcHHHHHHHHHHH
Q 009632 284 -AYVRLLRDNEAEVRIAAAGKV 304 (530)
Q Consensus 284 -~l~~~l~d~~~~vr~~a~~~l 304 (530)
.++-.+.|+.|.|-.++-..+
T Consensus 390 ~~lllhl~d~~p~va~ACr~~~ 411 (533)
T KOG2032|consen 390 APLLLHLQDPNPYVARACRSEL 411 (533)
T ss_pred ccceeeeCCCChHHHHHHHHHH
Confidence 123345778777755443333
No 120
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=0.00011 Score=73.27 Aligned_cols=183 Identities=18% Similarity=0.283 Sum_probs=138.1
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc--hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhh
Q 009632 163 ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240 (530)
Q Consensus 163 ~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 240 (530)
+-+......+.|+.+.+|..++..+..+++.-.+ -.....++..+...+.|+++-|-..|+..+..+++.+++.
T Consensus 727 e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~---- 802 (982)
T KOG4653|consen 727 EPLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPED---- 802 (982)
T ss_pred HHHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchh----
Confidence 4456666778899999999999999999985433 2345678999999999999999999999999999886644
Q ss_pred ccHHHHHH-h---cCCCCHHHHHHHHHHHHHHHHHhCCcc--cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC--
Q 009632 241 HILPVIVN-F---SQDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN-- 312 (530)
Q Consensus 241 ~~~~~l~~-~---~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~-- 312 (530)
++|-+.+ . -+......|--+.++|.+++...|+-. +...++..++...+|++..-|.+++.+++.++....
T Consensus 803 -il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~ 881 (982)
T KOG4653|consen 803 -ILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQ 881 (982)
T ss_pred -hHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhh
Confidence 5565554 2 222224566666788999888888743 345788899999999988899999999999988653
Q ss_pred -HHHHHhhhhHhHhHh-ccCCcHHHHHHHHHHHHhhccccC
Q 009632 313 -PELAIQHILPCVKEL-SSDSSQHVRSALASVIMGMAPLLG 351 (530)
Q Consensus 313 -~~~~~~~l~~~l~~~-~~d~~~~vr~~~~~~l~~l~~~~~ 351 (530)
.+.+ ..++..+..+ ..|.+.-+|++|+..+..+-...|
T Consensus 882 vsd~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg 921 (982)
T KOG4653|consen 882 VSDFF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTG 921 (982)
T ss_pred hhHHH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccc
Confidence 3333 3444444433 347888999999999888877666
No 121
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=98.22 E-value=0.0012 Score=61.10 Aligned_cols=184 Identities=18% Similarity=0.192 Sum_probs=125.0
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHh-hCHHHH---HhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccC----HHHHH
Q 009632 285 YVRLLRDNEAEVRIAAAGKVTKFCRI-LNPELA---IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG----KDATI 356 (530)
Q Consensus 285 l~~~l~d~~~~vr~~a~~~l~~~~~~-~~~~~~---~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~----~~~~~ 356 (530)
.+..+.+.....|.+++..+..+... +-.+.+ ...+++.+.+.++....+-+..+++.++.++-.+| .+.+.
T Consensus 48 ~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~ 127 (309)
T PF05004_consen 48 AIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIF 127 (309)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHH
Confidence 34445666678888888888776643 222221 24556666666655554566677788888877755 35678
Q ss_pred HhHHHHHHHhhcCCC--hHHHHHHHHhhHHhhhhhchhH-HHhhHHHHHH---H--Hhc----------CCChHHHHHHH
Q 009632 357 EQLLPIFLSLLKDEF--PDVRLNIISKLDQVNQVIGIDL-LSQSLLPAIV---E--LAE----------DRHWRVRLAII 418 (530)
Q Consensus 357 ~~l~~~l~~~l~d~~--~~vr~~a~~~l~~l~~~~~~~~-~~~~l~~~l~---~--~~~----------~~~~~~R~~~~ 418 (530)
..+.|.+.+.+.|.. ..+|..++.+|+-++-..+.+. -....+..+. . ..+ .++..+..+|+
T Consensus 128 ~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL 207 (309)
T PF05004_consen 128 EELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAAL 207 (309)
T ss_pred HHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHH
Confidence 889999999999875 4678888888887665443321 1122223332 1 111 12357999999
Q ss_pred HHHHHHHhhhChhhH---HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC
Q 009632 419 EYIPLLASQLGVGFF---DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG 468 (530)
Q Consensus 419 ~~l~~l~~~~~~~~~---~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~ 468 (530)
.+.+.+...++...+ ....+|.+..+|..++.+||.+|.++|+.+++...
T Consensus 208 ~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 208 SAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 999999988886433 35578999999999999999999999999887653
No 122
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.21 E-value=0.0071 Score=59.13 Aligned_cols=401 Identities=16% Similarity=0.088 Sum_probs=211.2
Q ss_pred HHHHHHhcCC--ccchhHHHHhHhhhhcCCCCh---H-HHHHHHHHHHhhcCCCC-hhHHHHHHHHHHHHHhhhcc----
Q 009632 128 PLVKRLAAGE--WFTARVSACGLFHIAYPSAPD---I-LKTELRSIYTQLCQDDM-PMVRRSAASNLGKFAATVEP---- 196 (530)
Q Consensus 128 ~~l~~l~~~~--~~~~r~~~~~~l~~l~~~~~~---~-~~~~l~~~l~~l~~d~~-~~vR~~a~~~l~~l~~~~~~---- 196 (530)
+.+..+...+ ..........+++.++..-.. + .....++.++.++.+++ ..++.....++..+.+..+.
T Consensus 54 ~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~ 133 (678)
T KOG1293|consen 54 ELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKK 133 (678)
T ss_pred HHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccc
Confidence 4444444333 333443444455444432211 2 34556788888888888 88999999999999886543
Q ss_pred -hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchh---hhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh
Q 009632 197 -AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD---CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 272 (530)
Q Consensus 197 -~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~ 272 (530)
......+++.+..+...+.+.+...-+ .+...+.....+. +-..+.+.+.-+....+..+|.++..++..-...+
T Consensus 134 ~s~~~~sIi~~~s~l~s~~lk~~~~l~~-~~~a~~s~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL 212 (678)
T KOG1293|consen 134 MSLHLKSIIVKFSLLYSIELKYISRLDV-SRAAHLSSTKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRIL 212 (678)
T ss_pred hhhhHHHHHHHHHHHHhhhhhhhhhhhh-hhhccccccchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceee
Confidence 122344666665555522221111111 1111111111110 11224444454555556778988888887322211
Q ss_pred CCcc----------cccchHH--HHHHhcCCCcHHHHHHHHHHHHHHHHhhCH-H--HHHh--------hhhHhH-hHhc
Q 009632 273 GPEP----------TRMDLVP--AYVRLLRDNEAEVRIAAAGKVTKFCRILNP-E--LAIQ--------HILPCV-KELS 328 (530)
Q Consensus 273 ~~~~----------~~~~l~~--~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~-~--~~~~--------~l~~~l-~~~~ 328 (530)
..+. ....+.+ ...++.+|+++.-|..++.++..+...-.. + .+.. .+..+. ..+.
T Consensus 213 ~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~ 292 (678)
T KOG1293|consen 213 RNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLM 292 (678)
T ss_pred ecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheee
Confidence 1110 0122333 455677888888887777777766653211 1 0000 111111 1223
Q ss_pred cCCcHHHHHHHHHHHHhhc---cccCHHHHHHhHHHHHHHhh------cCCChHHHHHHHHhh---HHhhhhhchhHHHh
Q 009632 329 SDSSQHVRSALASVIMGMA---PLLGKDATIEQLLPIFLSLL------KDEFPDVRLNIISKL---DQVNQVIGIDLLSQ 396 (530)
Q Consensus 329 ~d~~~~vr~~~~~~l~~l~---~~~~~~~~~~~l~~~l~~~l------~d~~~~vr~~a~~~l---~~l~~~~~~~~~~~ 396 (530)
.|+-|..-...+......+ +.....++.....+....++ +...+..|.-++.-. ...+...|.. ..+
T Consensus 293 ~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~-~~k 371 (678)
T KOG1293|consen 293 NDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEIS-LKK 371 (678)
T ss_pred cCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchh-HHH
Confidence 4555543333333333222 21111122222222222222 233334443333221 1111111110 112
Q ss_pred hHHHH-----HHHHhcCCChHHHHHHHHHHHHHHhhh---ChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC
Q 009632 397 SLLPA-----IVELAEDRHWRVRLAIIEYIPLLASQL---GVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG 468 (530)
Q Consensus 397 ~l~~~-----l~~~~~~~~~~~R~~~~~~l~~l~~~~---~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~ 468 (530)
+++.. +....-.++...+.+++.++..++..+ ..+.-..++...+.+++.|+...|...+..++..++-.++
T Consensus 372 ~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs 451 (678)
T KOG1293|consen 372 EILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFS 451 (678)
T ss_pred HHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcc
Confidence 22222 222223346778899998887776644 3333345677778888899999999999999999998876
Q ss_pred hh---HHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcChHH---HH-hhHHHHHHhhccCCCCCC
Q 009632 469 PE---WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI---TC-SRLLPVVINASKDRYLNL 530 (530)
Q Consensus 469 ~~---~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~~~---~~-~~~~p~l~~~l~D~~~~v 530 (530)
+. +.....+..+..+..+++..+|..+.+++.+++-....++ +. ..-...+..+.+||.+.|
T Consensus 452 ~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~V 520 (678)
T KOG1293|consen 452 NLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAV 520 (678)
T ss_pred cHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHH
Confidence 53 4457789999999999999999999999999876655332 22 222446666777776543
No 123
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.20 E-value=0.00035 Score=65.12 Aligned_cols=189 Identities=17% Similarity=0.113 Sum_probs=123.6
Q ss_pred hHhHhccCCcHHHHHHHHHHHHhh-ccc-cC-HHHHHHhHHHHHHHhhcC-CChHHHHHHHHhhHHhhhhhchhHH--Hh
Q 009632 323 CVKELSSDSSQHVRSALASVIMGM-APL-LG-KDATIEQLLPIFLSLLKD-EFPDVRLNIISKLDQVNQVIGIDLL--SQ 396 (530)
Q Consensus 323 ~l~~~~~d~~~~vr~~~~~~l~~l-~~~-~~-~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~--~~ 396 (530)
.+.++..+....-|..++..+..+ +.. ++ .+.+..+++..++..|.| .+...|.-|++.+..++..=....+ .+
T Consensus 291 ~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE 370 (516)
T KOG2956|consen 291 LLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTE 370 (516)
T ss_pred HHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHH
Confidence 344444443444555555544443 321 22 144567788888899999 7888999999999999865322111 12
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhH---Hh
Q 009632 397 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW---AM 473 (530)
Q Consensus 397 ~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~---~~ 473 (530)
..+..+.+...|++..+-..|.+.+..++....+..-...+.|.++. .+...-..+++++..+++.+..+. ..
T Consensus 371 ~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll 446 (516)
T KOG2956|consen 371 IAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILT----ADEPRAVAVIKMLTKLFERLSAEELLNLL 446 (516)
T ss_pred HHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhc----CcchHHHHHHHHHHHHHhhcCHHHHHHhh
Confidence 33444555567777665555566555554444444333445665554 334445677778899998887653 23
Q ss_pred hhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcChHHHHhhH
Q 009632 474 QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRL 515 (530)
Q Consensus 474 ~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~ 515 (530)
.++.|++.+.++..+..||..++.++..+...+|.+.+.+|+
T Consensus 447 ~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL 488 (516)
T KOG2956|consen 447 PDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHL 488 (516)
T ss_pred hhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHh
Confidence 788999999999999999999999999999999976554443
No 124
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.20 E-value=0.00014 Score=67.60 Aligned_cols=196 Identities=18% Similarity=0.213 Sum_probs=129.6
Q ss_pred hhHHHHHHHHhcCCccchhHHHHh-HhhhhcCCC-C--hHHHHHHHHHHHhhcCC-CChhHHHHHHHHHHHHHhhhcch-
Q 009632 124 DWYIPLVKRLAAGEWFTARVSACG-LFHIAYPSA-P--DILKTELRSIYTQLCQD-DMPMVRRSAASNLGKFAATVEPA- 197 (530)
Q Consensus 124 ~~l~~~l~~l~~~~~~~~r~~~~~-~l~~l~~~~-~--~~~~~~l~~~l~~l~~d-~~~~vR~~a~~~l~~l~~~~~~~- 197 (530)
.++...+..+..++...-|..|.. +...++... + +++..+++..+.+.+.| .+...|+.|+..|..++..-+..
T Consensus 286 ~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l 365 (516)
T KOG2956|consen 286 ALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARL 365 (516)
T ss_pred HHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhh
Confidence 345566666666655556666655 334333331 1 34677888888888888 78889999999999999875542
Q ss_pred -hhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcc
Q 009632 198 -HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP 276 (530)
Q Consensus 198 -~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~ 276 (530)
...+..+-.+++...|..+.|-..|.+.+..+.....+......+.|.+.. .+...-.++.+.+..+.+.+..+.
T Consensus 366 ~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~Ee 441 (516)
T KOG2956|consen 366 FDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILT----ADEPRAVAVIKMLTKLFERLSAEE 441 (516)
T ss_pred hchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhc----CcchHHHHHHHHHHHHHhhcCHHH
Confidence 223445566777778888877666666655554443332222334444433 333344556667777776665543
Q ss_pred ---cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHh
Q 009632 277 ---TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKEL 327 (530)
Q Consensus 277 ---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~ 327 (530)
....+.|.+++.....+..||+.++.+|-.+...+|.+.+ .|.+.++
T Consensus 442 L~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~m----ePhL~~L 491 (516)
T KOG2956|consen 442 LLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEM----EPHLEQL 491 (516)
T ss_pred HHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhh----hhHhhhc
Confidence 2467899999999999999999999999999999997543 4555444
No 125
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=98.17 E-value=0.0035 Score=60.30 Aligned_cols=192 Identities=18% Similarity=0.128 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHHhhhcc-----hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc--hhhhhccHHHHHHhcC
Q 009632 179 VRRSAASNLGKFAATVEP-----AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQ 251 (530)
Q Consensus 179 vR~~a~~~l~~l~~~~~~-----~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~~~ 251 (530)
+-...+..+..+..+..+ +.+...++..+......++..||..+++.+..+...+++ +...+.++..+.+-+-
T Consensus 63 i~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~ 142 (885)
T COG5218 63 IPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLF 142 (885)
T ss_pred cHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHh
Confidence 334445555555553222 123334444555555666677787777777777777776 5566666777777777
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhc-CCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccC
Q 009632 252 DKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLL-RDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSD 330 (530)
Q Consensus 252 d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d 330 (530)
|..+.||..+..++..+..--+.+. ..+...+...+ +|++.+||..|+-.+..= +.-.|++.+-..|
T Consensus 143 DRE~~VR~eAv~~L~~~Qe~~~nee--n~~~n~l~~~vqnDPS~EVRr~allni~vd----------nsT~p~IlERarD 210 (885)
T COG5218 143 DREKAVRREAVKVLCYYQEMELNEE--NRIVNLLKDIVQNDPSDEVRRLALLNISVD----------NSTYPCILERARD 210 (885)
T ss_pred cchHHHHHHHHHHHHHHHhccCChH--HHHHHHHHHHHhcCcHHHHHHHHHHHeeeC----------CCcchhHHHHhhh
Confidence 7777788888777777765444332 12233333333 688889998877654321 3456777777777
Q ss_pred CcHHHHHHHH-HHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHH
Q 009632 331 SSQHVRSALA-SVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQ 384 (530)
Q Consensus 331 ~~~~vr~~~~-~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~ 384 (530)
-+.-.|..+. ++++.++.... ....+.+. ++.-.+.|.+..||.++...+..
T Consensus 211 v~~anRr~vY~r~Lp~iGd~~~-lsi~kri~-l~ewgl~dRe~sv~~a~~d~ia~ 263 (885)
T COG5218 211 VSGANRRMVYERCLPRIGDLKS-LSIDKRIL-LMEWGLLDREFSVKGALVDAIAS 263 (885)
T ss_pred hhHHHHHHHHHHHhhhhcchhh-ccccceeh-hhhhcchhhhhhHHHHHHHHHHH
Confidence 7766665443 34444432211 11122333 45556788888999988887765
No 126
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=0.011 Score=58.70 Aligned_cols=129 Identities=9% Similarity=0.061 Sum_probs=91.0
Q ss_pred HhhHHHHHHHHhc-----C---CChHHHHHHHHHHHHHHhhhCh-----hhHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 009632 395 SQSLLPAIVELAE-----D---RHWRVRLAIIEYIPLLASQLGV-----GFFDDKLGALCMQWLQDKVYSIRDAAANNLK 461 (530)
Q Consensus 395 ~~~l~~~l~~~~~-----~---~~~~~R~~~~~~l~~l~~~~~~-----~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~ 461 (530)
.+.+++.+...+. + .+.+-.+.++..++.+...... ..+...++++++..++++.--.|..||..+.
T Consensus 406 fqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is 485 (970)
T COG5656 406 FQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIS 485 (970)
T ss_pred hhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHH
Confidence 3567777766652 1 2455667788888887774432 1233456777777889999999999999999
Q ss_pred HHHHHhChhHHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcC-hHHHHhhHHHHHHhhc
Q 009632 462 RLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG-SEITCSRLLPVVINAS 523 (530)
Q Consensus 462 ~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~-~~~~~~~~~p~l~~~l 523 (530)
.+-..++......++.....+++++.+..|+..|.-|+.-++.... .+.+..++-+.+.+++
T Consensus 486 ~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLL 548 (970)
T COG5656 486 TIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLL 548 (970)
T ss_pred HHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHH
Confidence 9876666554556677778888888999999999999998876543 3445556655665554
No 127
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=98.14 E-value=0.012 Score=59.87 Aligned_cols=151 Identities=15% Similarity=0.184 Sum_probs=98.7
Q ss_pred HHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHH---HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhC
Q 009632 353 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG 429 (530)
Q Consensus 353 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~---~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~ 429 (530)
..+...+.|.+.+.+....-.+|..-+.+|..+......+.+ .+.++|.+.+-++=++..+|.....++..+....+
T Consensus 862 QRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~ 941 (1030)
T KOG1967|consen 862 QRFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESE 941 (1030)
T ss_pred HHHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcc
Confidence 344555667777666655556666666666666665443321 36677777777777777777777777776655443
Q ss_pred --hhhHHHHHHHHHHHHhcCCc---HHHHHHHHHHHHHHHHHhChh---HHhhhhHHHHHhhccCCChHHHHHHHHHHHH
Q 009632 430 --VGFFDDKLGALCMQWLQDKV---YSIRDAAANNLKRLAEEFGPE---WAMQHITPQVLEMINNPHYLYRMTILRAISL 501 (530)
Q Consensus 430 --~~~~~~~~~~~l~~~l~d~~---~~Vr~~a~~~l~~l~~~~~~~---~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~ 501 (530)
.......++|.++.+-.|++ ..||+.|++|++.+.+..... .+++.++..+.+.+.|+...||+.|.++=+.
T Consensus 942 tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen 942 TLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQN 1021 (1030)
T ss_pred ccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhh
Confidence 23335567777777776655 577777888877777754332 2356677777777777777777777777665
Q ss_pred Hh
Q 009632 502 LA 503 (530)
Q Consensus 502 i~ 503 (530)
+.
T Consensus 1022 W~ 1023 (1030)
T KOG1967|consen 1022 WY 1023 (1030)
T ss_pred hh
Confidence 54
No 128
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=0.0018 Score=64.90 Aligned_cols=186 Identities=18% Similarity=0.162 Sum_probs=129.1
Q ss_pred cHHHHHHHhcCh-hHHHHHHHhhcHHHHHHhhChHhh-----hhcccccccc-ccC-CchHHHHHHHHHHhcccccCCCc
Q 009632 10 PIAVLIDELKND-DIQLRLNSIRRLSTIARALGEERT-----RKELIPFLSE-NND-DDDEVLLAMAEELGVFIPYVGGV 81 (530)
Q Consensus 10 ~~~~l~~~l~~~-~~~~R~~a~~~l~~~~~~~~~~~~-----~~~l~~~l~~-~~d-~~~~vr~~~~~~l~~~~~~~~~~ 81 (530)
-+..|++++++. |+..-..|++.+.++.. +|.+.. .+.++|.|.. +++ .+.++...|+++|..+-+.+...
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~-mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S 246 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLS-MGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRS 246 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHh-hcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccch
Confidence 478899999977 99888888887777643 344443 3467777766 443 57899999999997766544311
Q ss_pred ---cchhcchhHH-HhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCC
Q 009632 82 ---EHAHVLLPPL-ETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAP 157 (530)
Q Consensus 82 ---~~~~~l~~~l-~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~ 157 (530)
-.....+|+| ..++.-+.-+|.+.++.++..|...-+...+..--+..+...+.=-+-.++..|....+.++..+.
T Consensus 247 ~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~ 326 (1051)
T KOG0168|consen 247 SAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIR 326 (1051)
T ss_pred hheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 1122355655 556677888999999999999998877655433212222111111122455667777777777776
Q ss_pred hH---HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc
Q 009632 158 DI---LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP 196 (530)
Q Consensus 158 ~~---~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~ 196 (530)
.+ +.-+.+|.|..+++..+..+-..++-++..++..+..
T Consensus 327 sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h 368 (1051)
T KOG0168|consen 327 SDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQH 368 (1051)
T ss_pred CccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhccc
Confidence 65 6788899999999988888889999999999887755
No 129
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.04 E-value=8.2e-06 Score=53.78 Aligned_cols=53 Identities=32% Similarity=0.137 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHHHhhhCh--hhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Q 009632 411 WRVRLAIIEYIPLLASQLGV--GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRL 463 (530)
Q Consensus 411 ~~~R~~~~~~l~~l~~~~~~--~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l 463 (530)
|++|..++.+|+.++...+. ..+...++|.+..++.|+...||..|+.+||.|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 67778888887776544332 224566777777777777778888888777754
No 130
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=98.03 E-value=0.0019 Score=59.71 Aligned_cols=199 Identities=17% Similarity=0.161 Sum_probs=137.7
Q ss_pred ccCCcHHHHHHHHHHHHhhcc-ccCHHHH---HHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhc----hhHHHhhHH
Q 009632 328 SSDSSQHVRSALASVIMGMAP-LLGKDAT---IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG----IDLLSQSLL 399 (530)
Q Consensus 328 ~~d~~~~vr~~~~~~l~~l~~-~~~~~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~----~~~~~~~l~ 399 (530)
+.+++...|..++..+..+.. ..-.++. ...+++.+...++-+...-+..|+.+++-++-.+| .+.+.+.+.
T Consensus 52 l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~ 131 (309)
T PF05004_consen 52 LTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELK 131 (309)
T ss_pred HHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHH
Confidence 356778899999988877653 2333333 44677888888887776667778888888887766 345567889
Q ss_pred HHHHHHhcCCC--hHHHHHHHHHHHHHHhhhChhh--HHH--HHHHHHHHH--hc-C---------CcHHHHHHHHHHHH
Q 009632 400 PAIVELAEDRH--WRVRLAIIEYIPLLASQLGVGF--FDD--KLGALCMQW--LQ-D---------KVYSIRDAAANNLK 461 (530)
Q Consensus 400 ~~l~~~~~~~~--~~~R~~~~~~l~~l~~~~~~~~--~~~--~~~~~l~~~--l~-d---------~~~~Vr~~a~~~l~ 461 (530)
|.|...+.|.. ...|..++.+++.++-..+.+. ... ..+..++.. .+ | +.+.|..+|+.+++
T Consensus 132 ~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~ 211 (309)
T PF05004_consen 132 PVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWA 211 (309)
T ss_pred HHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHH
Confidence 99999888764 5688888888887765444322 211 233322221 11 2 23679999999999
Q ss_pred HHHHHhChhHH---hhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcCh---H---HHHhhHHHHHHhhccCC
Q 009632 462 RLAEEFGPEWA---MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS---E---ITCSRLLPVVINASKDR 526 (530)
Q Consensus 462 ~l~~~~~~~~~---~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~---~---~~~~~~~p~l~~~l~D~ 526 (530)
-+...++.... .+..+|.+..++..++..||.+|-++++-+.+.... + .-.+.+...|..+..|.
T Consensus 212 lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l~~~l~~La~dS 285 (309)
T PF05004_consen 212 LLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARDHEEDFLYEDMEELLEQLRELATDS 285 (309)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHHHHhc
Confidence 99988876322 256789999999999999999999999988775432 1 12455666667666665
No 131
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=98.01 E-value=0.0025 Score=57.23 Aligned_cols=226 Identities=12% Similarity=0.052 Sum_probs=138.3
Q ss_pred HHhhhcccchHHHHHHHHHHHHHHhhcChhhhhh----hHHHHHHHHhcCCccchhHHHHhHhhhhc--CCCChHHHHHH
Q 009632 91 LETLCTVEETCVRDKAVESLCRIGSQMRESDLVD----WYIPLVKRLAAGEWFTARVSACGLFHIAY--PSAPDILKTEL 164 (530)
Q Consensus 91 l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~----~l~~~l~~l~~~~~~~~r~~~~~~l~~l~--~~~~~~~~~~l 164 (530)
|...++++++.+|..|+..|+.+...++++.+.. .+...+..-.. +...+... ...+..+. +..+++....+
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~-D~~~~~~~-l~gl~~L~~~~~~~~~~~~~i 81 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLD-DHACVQPA-LKGLLALVKMKNFSPESAVKI 81 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhc-cHhhHHHH-HHHHHHHHhCcCCChhhHHHH
Confidence 4455678999999999999999999998754433 23344433332 23334433 44444443 34455556666
Q ss_pred HHHHHhhcC--CCChhHHHHHHHHHHHHHhhhcch--hhHHHHHHHHHHhhcCC-chhHHHHHHHHHHHHhhhcCchhhh
Q 009632 165 RSIYTQLCQ--DDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQDD-QDSVRLLAVEGCAALGKLLEPQDCV 239 (530)
Q Consensus 165 ~~~l~~l~~--d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~-~~~vr~~a~~~l~~l~~~~~~~~~~ 239 (530)
+..+.+-.+ .-....|..+.+.+..+....... ...+.++..+.+.+..+ +|+--..+.+.+..+...+....+.
T Consensus 82 ~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~~ 161 (262)
T PF14500_consen 82 LRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISEFA 161 (262)
T ss_pred HHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccchhH
Confidence 666665433 335678999999999988765432 22345666666666654 5666667777777777776654444
Q ss_pred hccHHHHHHh--------cCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhh
Q 009632 240 AHILPVIVNF--------SQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL 311 (530)
Q Consensus 240 ~~~~~~l~~~--------~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~ 311 (530)
+.+...+.-. -+|+..-.|......|..... ....+.+..+|.+++-+.++.+.++..+++++...+..+
T Consensus 162 e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~--s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y 239 (262)
T PF14500_consen 162 EDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS--STPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENY 239 (262)
T ss_pred HHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc--CcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHC
Confidence 4444443322 123322233333333322221 112224567899999999999999999999999999998
Q ss_pred CHHHHHhhh
Q 009632 312 NPELAIQHI 320 (530)
Q Consensus 312 ~~~~~~~~l 320 (530)
|.+.+.+.+
T Consensus 240 ~~~~~~~~~ 248 (262)
T PF14500_consen 240 GADSLSPHW 248 (262)
T ss_pred CHHHHHHHH
Confidence 876554433
No 132
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=0.011 Score=52.85 Aligned_cols=243 Identities=13% Similarity=0.081 Sum_probs=148.1
Q ss_pred HHHHHHhcccccCCCccchhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhh-------hhhHHHHHHHHhcCCc
Q 009632 66 AMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDL-------VDWYIPLVKRLAAGEW 138 (530)
Q Consensus 66 ~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~-------~~~l~~~l~~l~~~~~ 138 (530)
....||.++-+...+......+.|.|...+..++..|+..+++.++.+.+....... ...+++.+...+.+++
T Consensus 62 lcVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged 141 (524)
T KOG4413|consen 62 LCVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED 141 (524)
T ss_pred hHHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc
Confidence 355666666554444445567788888888889999999999999999998875433 3447788888888888
Q ss_pred cchhHHHHhHhhhhcCCCCh-H--HHHHHHHH--HHhhcCCCChhHHHHHHHHHHHHHhhhcc---hhhHHHHHHHHHHh
Q 009632 139 FTARVSACGLFHIAYPSAPD-I--LKTELRSI--YTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDL 210 (530)
Q Consensus 139 ~~~r~~~~~~l~~l~~~~~~-~--~~~~l~~~--l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~ 210 (530)
..+-..+...+..++..-.. + ...++..- +..+..-.+..+|..+.+.+..+....+. +.-.+.++..+..-
T Consensus 142 deVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaE 221 (524)
T KOG4413|consen 142 DEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAE 221 (524)
T ss_pred HHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHH
Confidence 88888888777665432110 0 00001100 00111123456788887877777665433 33345677777665
Q ss_pred hcC-CchhHHHHHHHHHHHHhhhcCchhhh--hccHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHhCCccccc----c-
Q 009632 211 TQD-DQDSVRLLAVEGCAALGKLLEPQDCV--AHILPVIVNFSQ--DKSWRVRYMVANQLYELCEAVGPEPTRM----D- 280 (530)
Q Consensus 211 ~~d-~~~~vr~~a~~~l~~l~~~~~~~~~~--~~~~~~l~~~~~--d~~~~vr~~~~~~l~~l~~~~~~~~~~~----~- 280 (530)
++. ++.-|+..+++....++..-....|. ..++..++..+. |.++--+. ..+..+++.+|++..+. .
T Consensus 222 lkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekf---ralmgfgkffgkeaimdvseeai 298 (524)
T KOG4413|consen 222 LKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKF---RALMGFGKFFGKEAIMDVSEEAI 298 (524)
T ss_pred hcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHH---HHHHHHHHHhcchHHhhcCHHHH
Confidence 555 55679999999888887654333332 235566665543 33332222 22334445555443221 1
Q ss_pred ------hHHHHHHhcCCCcHHHHHHHHHHHHHHHHhh
Q 009632 281 ------LVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL 311 (530)
Q Consensus 281 ------l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~ 311 (530)
.+.-.++.+.-++|+...+|+.+++.++...
T Consensus 299 cealiiaidgsfEmiEmnDpdaieaAiDalGilGSnt 335 (524)
T KOG4413|consen 299 CEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNT 335 (524)
T ss_pred HHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCc
Confidence 2222344556777889999999999987765
No 133
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.97 E-value=1.1e-05 Score=53.15 Aligned_cols=52 Identities=35% Similarity=0.421 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHHHHHhhhcc--hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHH
Q 009632 177 PMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAA 228 (530)
Q Consensus 177 ~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~ 228 (530)
|.||..++.+|+.++...++ ..+.+.++|.+..++.|+++.||..|..+|+.
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 56777777777765544433 33456677777777777777777777776654
No 134
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.94 E-value=0.04 Score=57.91 Aligned_cols=132 Identities=17% Similarity=0.086 Sum_probs=91.8
Q ss_pred hHHHhhHHHHHHHHhcCC----ChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHH
Q 009632 392 DLLSQSLLPAIVELAEDR----HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEE 466 (530)
Q Consensus 392 ~~~~~~l~~~l~~~~~~~----~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~-d~~~~Vr~~a~~~l~~l~~~ 466 (530)
..+...+.|.+.+.++++ ++..+.+|--+++.+.- ++.++ ...-+|.++..+. .+.+-||..+.-++|.++-.
T Consensus 914 k~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~-iSa~f-ces~l~llftimeksp~p~IRsN~VvalgDlav~ 991 (1251)
T KOG0414|consen 914 KSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMC-ISAEF-CESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVR 991 (1251)
T ss_pred HHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhh-hhHHH-HHHHHHHHHHHHhcCCCceeeecchheccchhhh
Confidence 344456788888888654 67899999999988752 34443 4445777777776 78888999999999888877
Q ss_pred hChhHHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcChHHHHhhHHHHHHhhccCCCCC
Q 009632 467 FGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRYLN 529 (530)
Q Consensus 467 ~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~p~l~~~l~D~~~~ 529 (530)
+..- .+..-+.+...+.|++..||.+|+..+.+++-+- .-. ..-.++.+..++.||.+.
T Consensus 992 fpnl--ie~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd-miK-VKGql~eMA~cl~D~~~~ 1050 (1251)
T KOG0414|consen 992 FPNL--IEPWTEHLYRRLRDESPSVRKTALLVLSHLILND-MIK-VKGQLSEMALCLEDPNAE 1050 (1251)
T ss_pred cccc--cchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh-hhH-hcccHHHHHHHhcCCcHH
Confidence 6432 2556677788888999999999998888876431 000 122356667777777654
No 135
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.94 E-value=0.012 Score=61.45 Aligned_cols=148 Identities=15% Similarity=0.156 Sum_probs=90.3
Q ss_pred CHHHHHHhHHHHHHHhhcC----CChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhc-CCChHHHHHHHHHHHHHH
Q 009632 351 GKDATIEQLLPIFLSLLKD----EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLA 425 (530)
Q Consensus 351 ~~~~~~~~l~~~l~~~l~d----~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~-~~~~~~R~~~~~~l~~l~ 425 (530)
|++.....+.|++....+. .+++++.+|.-+++.++..- ..+.+.-+|.|...+. .+++.+|..++-+++-++
T Consensus 912 gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iS--a~fces~l~llftimeksp~p~IRsN~VvalgDla 989 (1251)
T KOG0414|consen 912 GEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCIS--AEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLA 989 (1251)
T ss_pred ChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHhcCCCceeeecchheccchh
Confidence 4455566666777766643 34677777777777765431 2233455666666655 567777777777777766
Q ss_pred hhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhh
Q 009632 426 SQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAP 504 (530)
Q Consensus 426 ~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~ 504 (530)
-.++. +.+-.-+++..-+.|..+.||+.|+.++..+.-+- -....-.++.+..++.||+.++|..|-.++..+..
T Consensus 990 v~fpn--lie~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd--miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen 990 VRFPN--LIEPWTEHLYRRLRDESPSVRKTALLVLSHLILND--MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred hhccc--ccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh--hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence 54432 22334566677777777777777777776655331 01113346666667777777777777766665544
No 136
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=0.00093 Score=63.79 Aligned_cols=281 Identities=14% Similarity=0.027 Sum_probs=169.8
Q ss_pred HHhHhhhhcCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHH
Q 009632 145 ACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVE 224 (530)
Q Consensus 145 ~~~~l~~l~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~ 224 (530)
+...++.+....+.+.-+.+++.+..--+.-.+.+.+.++..++-......+ ..++..+.+++..++...-++|..
T Consensus 393 alyalGLI~Agfgr~~TeYL~e~~~~teDe~~~~l~yG~~LGiGL~~MgSan----~eiye~lKe~l~nD~a~~geAa~~ 468 (926)
T COG5116 393 ALYALGLIKAGFGREDTEYLLEYFLDTEDELTPELAYGVCLGIGLINMGSAN----REIYEKLKELLKNDRALLGEAAVY 468 (926)
T ss_pred eeeeehhhccCcCcccHHHHHHHhCcccccccHHHHHHHHhhhcchhccccc----HHHHHHHHHHHhcchhhhhhhhhh
Confidence 3444455555555555555665554433334578888888887766543333 356677777777776666666666
Q ss_pred HHHHHhhhcCchhhhhccHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHH
Q 009632 225 GCAALGKLLEPQDCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGK 303 (530)
Q Consensus 225 ~l~~l~~~~~~~~~~~~~~~~l~~~~~d-~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~ 303 (530)
.++-+.-..... ..+.-+...... ...++.+...-.++-+.- |.+ +..-.++.+++.|.++..|.+.+-+
T Consensus 469 gMGl~mLgt~s~----eai~dm~tya~ETqhe~i~Rglgig~aLi~y--grq---e~add~I~ell~d~ds~lRy~G~fs 539 (926)
T COG5116 469 GMGLLMLGTWSV----EAIEDMRTYAGETQHERIKRGLGIGFALILY--GRQ---EMADDYINELLYDKDSILRYNGVFS 539 (926)
T ss_pred ccceeeecCCCH----HHHHHHHHHhcchhhhhHHhhhhhhhhHhhh--hhH---HHHHHHHHHHhcCchHHhhhccHHH
Confidence 665554332221 122222222222 234455554433333321 211 1223456678889989999888877
Q ss_pred HHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhc-CCChHHHHHHHHhh
Q 009632 304 VTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK-DEFPDVRLNIISKL 382 (530)
Q Consensus 304 l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l 382 (530)
++.-.-..|.......++++- +.|.+..||+++.-+++-+|-. ....++-..++|. ..++.||...+-+|
T Consensus 540 ~alAy~GTgn~~vv~~lLh~a---vsD~nDDVrRAAViAlGfvc~~------D~~~lv~tvelLs~shN~hVR~g~AvaL 610 (926)
T COG5116 540 LALAYVGTGNLGVVSTLLHYA---VSDGNDDVRRAAVIALGFVCCD------DRDLLVGTVELLSESHNFHVRAGVAVAL 610 (926)
T ss_pred HHHHHhcCCcchhHhhhheee---cccCchHHHHHHHHheeeeEec------CcchhhHHHHHhhhccchhhhhhhHHHh
Confidence 765544445543334444332 5788889999998888776521 1123344445554 45788999999999
Q ss_pred HHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhH--HHHHHHHHHHHhcCCcHH
Q 009632 383 DQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF--DDKLGALCMQWLQDKVYS 451 (530)
Q Consensus 383 ~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~--~~~~~~~l~~~l~d~~~~ 451 (530)
+-.|..-|.. ..+..|..+..|++.-+|+.|+-+++.+.....++.. ...+...+.+.+.|+...
T Consensus 611 Giacag~G~~----~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~Khe~ 677 (926)
T COG5116 611 GIACAGTGDK----VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDKHES 677 (926)
T ss_pred hhhhcCCccH----HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhhhHh
Confidence 9888777643 4455666778899999999999999988777665442 234566666667766543
No 137
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=0.0035 Score=61.57 Aligned_cols=187 Identities=13% Similarity=0.079 Sum_probs=123.9
Q ss_pred HHHHHHHHHH-hhcCCCChhHHHHHHHHHHHHHhhh--cc---hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhc
Q 009632 160 LKTELRSIYT-QLCQDDMPMVRRSAASNLGKFAATV--EP---AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLL 233 (530)
Q Consensus 160 ~~~~l~~~l~-~l~~d~~~~vR~~a~~~l~~l~~~~--~~---~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~ 233 (530)
..+++++.+. ..+.-+...+....-+.++.++..- .+ +....-.-|.+...++-.|..||..|+..+..+....
T Consensus 126 iE~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~ 205 (1005)
T KOG1949|consen 126 IENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIR 205 (1005)
T ss_pred HhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCC
Confidence 3344444333 3344344445555555566665432 11 1122224466777788889999999999988888777
Q ss_pred Cchh-------hhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh----CCcccccchHHHHHHhcCCCcHHHHHHHHH
Q 009632 234 EPQD-------CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV----GPEPTRMDLVPAYVRLLRDNEAEVRIAAAG 302 (530)
Q Consensus 234 ~~~~-------~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~----~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~ 302 (530)
+++. ..+.-...+..++.|+.+.||..+...+..+...+ ++....+.+-.++-.+-.|+..+||.+..+
T Consensus 206 dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~ 285 (1005)
T KOG1949|consen 206 DPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFK 285 (1005)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhc
Confidence 6632 22333455677889999999998887777666543 333222233333444557888899999999
Q ss_pred HHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhh
Q 009632 303 KVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGM 346 (530)
Q Consensus 303 ~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l 346 (530)
.+..+...--.....+.++|.+...+.|++.+||.++...+..+
T Consensus 286 gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 286 GLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKI 329 (1005)
T ss_pred CcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHH
Confidence 99998876554556688899888889999999999999888766
No 138
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.88 E-value=0.017 Score=57.04 Aligned_cols=143 Identities=24% Similarity=0.215 Sum_probs=85.1
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH-------HHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhcccc----
Q 009632 282 VPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE-------LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL---- 350 (530)
Q Consensus 282 ~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~-------~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~---- 350 (530)
-|.+.+.++-.+.+||.+|+..+-.+....|++ ...+.-...+.+++.|+-+.||..++..+..+...+
T Consensus 176 ~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~i 255 (1005)
T KOG1949|consen 176 KPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMI 255 (1005)
T ss_pred hHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 355666666777777777776666665554443 223333445566677777777777776666554322
Q ss_pred CHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 009632 351 GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLL 424 (530)
Q Consensus 351 ~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l 424 (530)
++....+.+-.++-.+-.|...+||....+.+..+...-....+.+.++|.+-..+.|+..++|.++++.+..+
T Consensus 256 P~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 256 PPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKI 329 (1005)
T ss_pred CHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHH
Confidence 22222222222223334466667777777777777655444445567777777777777777777777777665
No 139
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=0.00064 Score=64.87 Aligned_cols=297 Identities=17% Similarity=0.163 Sum_probs=162.7
Q ss_pred CcHHHHHHHhcChhHHHHHH---HhhcHHHHHHhhChHhhhhccccccccccCC-chHHHHHHHHHHhcccccCCCccch
Q 009632 9 YPIAVLIDELKNDDIQLRLN---SIRRLSTIARALGEERTRKELIPFLSENNDD-DDEVLLAMAEELGVFIPYVGGVEHA 84 (530)
Q Consensus 9 ~~~~~l~~~l~~~~~~~R~~---a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~-~~~vr~~~~~~l~~~~~~~~~~~~~ 84 (530)
+..+.|..+|.+.+.+-|+. |..+++-+-..+|.+.+ +.|...+....|. .|++.-.++.-+|-.. .|+. -
T Consensus 370 ~~~~il~pYLP~e~ass~~~eGGalyalGLI~Agfgr~~T-eYL~e~~~~teDe~~~~l~yG~~LGiGL~~--MgSa--n 444 (926)
T COG5116 370 PGYEILKPYLPSEVASSRQKEGGALYALGLIKAGFGREDT-EYLLEYFLDTEDELTPELAYGVCLGIGLIN--MGSA--N 444 (926)
T ss_pred chhHhhhccCCcccchhhhccCceeeeehhhccCcCcccH-HHHHHHhCcccccccHHHHHHHHhhhcchh--cccc--c
Confidence 34556667777777655543 45555555444443333 3344343333332 3444444443333211 1211 1
Q ss_pred hcchhHHHhhhcccchHHHHHHHHHHHHHHh-hcChhhhhhhHHHHHHHHhcCCc-cch-hHHHHhHhhhhcCCCChHHH
Q 009632 85 HVLLPPLETLCTVEETCVRDKAVESLCRIGS-QMRESDLVDWYIPLVKRLAAGEW-FTA-RVSACGLFHIAYPSAPDILK 161 (530)
Q Consensus 85 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~-~~~~~~~~~~l~~~l~~l~~~~~-~~~-r~~~~~~l~~l~~~~~~~~~ 161 (530)
..+..-+.+++-.+....-++|+..++-++- +++.+. +.-+....+..+ .++ |-.++.+ + +.-... +
T Consensus 445 ~eiye~lKe~l~nD~a~~geAa~~gMGl~mLgt~s~ea-----i~dm~tya~ETqhe~i~Rglgig~-a-Li~ygr---q 514 (926)
T COG5116 445 REIYEKLKELLKNDRALLGEAAVYGMGLLMLGTWSVEA-----IEDMRTYAGETQHERIKRGLGIGF-A-LILYGR---Q 514 (926)
T ss_pred HHHHHHHHHHHhcchhhhhhhhhhccceeeecCCCHHH-----HHHHHHHhcchhhhhHHhhhhhhh-h-Hhhhhh---H
Confidence 3455556666655555555666666555433 222222 222222222222 111 1111111 0 111111 1
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhc
Q 009632 162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAH 241 (530)
Q Consensus 162 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 241 (530)
+..-..+.+++.|.++..|...+.+++.--..-++......+++. ..+|.++.||.+|+-+++-++-.- .+.
T Consensus 515 e~add~I~ell~d~ds~lRy~G~fs~alAy~GTgn~~vv~~lLh~---avsD~nDDVrRAAViAlGfvc~~D-----~~~ 586 (926)
T COG5116 515 EMADDYINELLYDKDSILRYNGVFSLALAYVGTGNLGVVSTLLHY---AVSDGNDDVRRAAVIALGFVCCDD-----RDL 586 (926)
T ss_pred HHHHHHHHHHhcCchHHhhhccHHHHHHHHhcCCcchhHhhhhee---ecccCchHHHHHHHHheeeeEecC-----cch
Confidence 222335668888999999998877766533322333333333332 378999999999999988776421 222
Q ss_pred cHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHH--HHhh
Q 009632 242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL--AIQH 319 (530)
Q Consensus 242 ~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~--~~~~ 319 (530)
+...+.-+.++.++.||...+-+|+-.+..-|.. ..+..+..++.|+.+-||.+|+-+.+-+.....++. -...
T Consensus 587 lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~----~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~ 662 (926)
T COG5116 587 LVGTVELLSESHNFHVRAGVAVALGIACAGTGDK----VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKR 662 (926)
T ss_pred hhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH----HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHH
Confidence 4444555556678999999999999888766643 456777888999999999999999998877665441 1233
Q ss_pred hhHhHhHhccCCc
Q 009632 320 ILPCVKELSSDSS 332 (530)
Q Consensus 320 l~~~l~~~~~d~~ 332 (530)
+...+.+.+.|++
T Consensus 663 I~k~f~~vI~~Kh 675 (926)
T COG5116 663 IIKKFNRVIVDKH 675 (926)
T ss_pred HHHHHHHHHhhhh
Confidence 4444444555544
No 140
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.86 E-value=0.067 Score=57.95 Aligned_cols=133 Identities=14% Similarity=0.204 Sum_probs=86.0
Q ss_pred HHhhHHHHHHHHh-cCCChHHHHHHHHHHHHHHhh--hC-hhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCh
Q 009632 394 LSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQ--LG-VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP 469 (530)
Q Consensus 394 ~~~~l~~~l~~~~-~~~~~~~R~~~~~~l~~l~~~--~~-~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~ 469 (530)
..+.++..+..+. .+.+|++|.+.+..+..+.-. ++ .+.-.+++...+.+++.|...+||+.|+.++.-+...-..
T Consensus 1523 l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~ 1602 (1710)
T KOG1851|consen 1523 LQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSKF 1602 (1710)
T ss_pred hHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcccc
Confidence 3456666665443 455799999999999876542 22 2223467888899999999999999999999887765322
Q ss_pred hHHhhhhHHHHHhhc--cCCChHHHHHHHHHHHHHhhhcChH--HHHhhHHHHHHhhccCCC
Q 009632 470 EWAMQHITPQVLEMI--NNPHYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRY 527 (530)
Q Consensus 470 ~~~~~~i~~~l~~~~--~d~~~~vr~~a~~~l~~i~~~~~~~--~~~~~~~p~l~~~l~D~~ 527 (530)
.... .......+.. ...+...+.+|..++|.++-+++-. .+..+.+..+-.+..|+-
T Consensus 1603 ~~~~-~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e~~ 1663 (1710)
T KOG1851|consen 1603 QFVS-DKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARESA 1663 (1710)
T ss_pred ccch-HhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCCch
Confidence 2221 1222222222 2335566778899999998887632 245555666666666653
No 141
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.86 E-value=2.7e-05 Score=43.92 Aligned_cols=30 Identities=43% Similarity=0.514 Sum_probs=21.3
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHHHhh
Q 009632 164 LRSIYTQLCQDDMPMVRRSAASNLGKFAAT 193 (530)
Q Consensus 164 l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~ 193 (530)
++|.+.++++|++|+||.+|+.+++.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 467777777777777777777777777654
No 142
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.85 E-value=0.032 Score=63.10 Aligned_cols=291 Identities=12% Similarity=0.150 Sum_probs=172.3
Q ss_pred HHHHHHHHHHHHHhhhcc------hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcC-ch-----hhhhccHHHH
Q 009632 179 VRRSAASNLGKFAATVEP------AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLE-PQ-----DCVAHILPVI 246 (530)
Q Consensus 179 vR~~a~~~l~~l~~~~~~------~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~-~~-----~~~~~~~~~l 246 (530)
-|.-+++-|..++.+-.. ...+..+-+.+.+.-.+.+..++..|+..|..++..+- .+ .+.+.++..+
T Consensus 1108 pr~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPf 1187 (1780)
T PLN03076 1108 PRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPF 1187 (1780)
T ss_pred CchhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHH
Confidence 355666666666654322 23344566667776667777899999998888876543 22 2344566666
Q ss_pred HHhcC-CCCHHHHHHHHHHHHHHHHHhCCccc--ccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH------HHHH
Q 009632 247 VNFSQ-DKSWRVRYMVANQLYELCEAVGPEPT--RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP------ELAI 317 (530)
Q Consensus 247 ~~~~~-d~~~~vr~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~------~~~~ 317 (530)
...+. ..+..+|..+.+++.++....+.... =..++..+.....++++.+-..|.+.+..++...-. ....
T Consensus 1188 e~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F 1267 (1780)
T PLN03076 1188 VIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTF 1267 (1780)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHH
Confidence 65443 46678999999999999887664331 234666666666788888888888888877654211 1122
Q ss_pred hhhhHhHhHhccCC-cHHHHHHHHHHHHhhccc-----------------------------------cCHHHHHHhHHH
Q 009632 318 QHILPCVKELSSDS-SQHVRSALASVIMGMAPL-----------------------------------LGKDATIEQLLP 361 (530)
Q Consensus 318 ~~l~~~l~~~~~d~-~~~vr~~~~~~l~~l~~~-----------------------------------~~~~~~~~~l~~ 361 (530)
..++.++.++.+.. +.++-..++..+..++.. .+.+.....-+|
T Consensus 1268 ~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~p 1347 (1780)
T PLN03076 1268 TDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFP 1347 (1780)
T ss_pred HHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHH
Confidence 44555565555432 222333333333321000 011111122233
Q ss_pred HHH---HhhcCCChHHHHHHHHhhHHhhhhhchh----HH----HhhHHHHHHHHhc-----------------C-----
Q 009632 362 IFL---SLLKDEFPDVRLNIISKLDQVNQVIGID----LL----SQSLLPAIVELAE-----------------D----- 408 (530)
Q Consensus 362 ~l~---~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~----~~~l~~~l~~~~~-----------------~----- 408 (530)
++. .+..|+..+||..|+..|=++....|.. .+ ..-++|.+..+-. +
T Consensus 1348 LL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e 1427 (1780)
T PLN03076 1348 LLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELD 1427 (1780)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchh
Confidence 333 3456899999999999998887777642 22 2234454433210 0
Q ss_pred -CChHHHHHHHHHHHHHHhhhChhh-----HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh
Q 009632 409 -RHWRVRLAIIEYIPLLASQLGVGF-----FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE 470 (530)
Q Consensus 409 -~~~~~R~~~~~~l~~l~~~~~~~~-----~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~ 470 (530)
..| ...+...++..++..+..-+ ..+.++..+..+...++..+-.....|+..+....|..
T Consensus 1428 ~~~W-l~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~ 1494 (1780)
T PLN03076 1428 QDAW-LYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHL 1494 (1780)
T ss_pred hhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhcc
Confidence 013 36667777777666554322 23445555555667788889999999999998887765
No 143
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.83 E-value=0.0051 Score=66.35 Aligned_cols=302 Identities=15% Similarity=0.122 Sum_probs=165.3
Q ss_pred chhcchhHHHh-----hhcccchHHHHHHHHHHHHHHhhcChh------h---hhhhHHHHHHHHhc--CCccchhHHHH
Q 009632 83 HAHVLLPPLET-----LCTVEETCVRDKAVESLCRIGSQMRES------D---LVDWYIPLVKRLAA--GEWFTARVSAC 146 (530)
Q Consensus 83 ~~~~l~~~l~~-----l~~d~~~~vR~~a~~~l~~l~~~~~~~------~---~~~~l~~~l~~l~~--~~~~~~r~~~~ 146 (530)
....+.|+... ++.++|..||-..+-|+..|.....|+ + +..+++..+..+.. ++.+..+....
T Consensus 42 ~~~~~~pl~~~l~~~~~L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~ll 121 (1266)
T KOG1525|consen 42 DLASLLPLADHLIKDFLLKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLL 121 (1266)
T ss_pred hHHHHHHHHHHHhhHHHhcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHH
Confidence 34555665544 456788999999988999988876552 1 22233444443333 23333444433
Q ss_pred hHhhhhc-----CCCC-hHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHH-hh---cCCch
Q 009632 147 GLFHIAY-----PSAP-DILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFED-LT---QDDQD 216 (530)
Q Consensus 147 ~~l~~l~-----~~~~-~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~-~~---~d~~~ 216 (530)
.-+..+. ..-. .+...++...+..+..+..+.-=......+..+.... +....+++..+.. ++ .|...
T Consensus 122 etl~~~k~~l~~~l~d~~e~~~~~f~~f~d~~~~~~~~~v~~~~~i~~~li~e~--d~v~~e~L~~ll~~lv~~~~~~~~ 199 (1266)
T KOG1525|consen 122 ETLAKVKFCLLMLLEDCQELVHELFRTFFDLARKGHPKKVFNMLDIAIMLITEE--DTVQSELLDVLLENLVKPGRDTIK 199 (1266)
T ss_pred HHHHHhHHHheeeccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHhccCCCCccH
Confidence 3333222 1111 2356777777777776665543333333333333222 2222333333332 22 22233
Q ss_pred hHHHHHHHHHHHHhhhcCch-----------------------------------hhhhccHHHHHHhcCCCCHHHHHHH
Q 009632 217 SVRLLAVEGCAALGKLLEPQ-----------------------------------DCVAHILPVIVNFSQDKSWRVRYMV 261 (530)
Q Consensus 217 ~vr~~a~~~l~~l~~~~~~~-----------------------------------~~~~~~~~~l~~~~~d~~~~vr~~~ 261 (530)
.-+..|-..+...+..+.+. .....++|.+..-+...+..+|..+
T Consensus 200 ~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~ll~~vip~l~~eL~se~~~~Rl~a 279 (1266)
T KOG1525|consen 200 EADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQLLLAVIPQLEFELLSEQEEVRLKA 279 (1266)
T ss_pred HHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 33333333333333332210 1122367777776777778899999
Q ss_pred HHHHHHHHHHhCCccc--ccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHH
Q 009632 262 ANQLYELCEAVGPEPT--RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSAL 339 (530)
Q Consensus 262 ~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~ 339 (530)
...+|.+...-+.... ...++..|+.-+.|.+++||..+++....+...-+.-.-...+.-.+....-|.+.++|..+
T Consensus 280 ~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~~~~~~~l~~~~~D~~~rir~~v 359 (1266)
T KOG1525|consen 280 VKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKASTILLALRERDLDEDVRVRTQV 359 (1266)
T ss_pred HHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhHHHHHHHHHhhcCChhhhheeeE
Confidence 8888887654332222 35677888888899999999999999888776522211112233334434445555555433
Q ss_pred HHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhh
Q 009632 340 ASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 388 (530)
Q Consensus 340 ~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 388 (530)
+-....... +.-..... ++..+...+.|..+.||..|+..|.++.+.
T Consensus 360 ~i~~~~v~~-~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 360 VIVACDVMK-FKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred EEEEeehhH-hhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 221111110 00111223 777777888999999999999999999874
No 144
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.83 E-value=3.9e-05 Score=43.31 Aligned_cols=29 Identities=38% Similarity=0.426 Sum_probs=17.7
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 009632 437 LGALCMQWLQDKVYSIRDAAANNLKRLAE 465 (530)
Q Consensus 437 ~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~ 465 (530)
++|.+.++++|+++.||.+|+.+++.+++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 35666666666666666666666666654
No 145
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.82 E-value=0.089 Score=58.16 Aligned_cols=120 Identities=10% Similarity=0.125 Sum_probs=72.3
Q ss_pred CChHHHHHHHHHHHHHHhhhCh--------------------h-hH---HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Q 009632 409 RHWRVRLAIIEYIPLLASQLGV--------------------G-FF---DDKLGALCMQWLQDKVYSIRDAAANNLKRLA 464 (530)
Q Consensus 409 ~~~~~R~~~~~~l~~l~~~~~~--------------------~-~~---~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~ 464 (530)
+.|..|.-+..++-.+...+.. . +. ..+++.+-+..-.+++...|...++.+..+.
T Consensus 1254 prW~Trvfaa~cv~r~i~~c~a~~~h~d~~la~e~k~~n~e~~d~LvlhlsDLirmsFmaaT~~n~~Lrl~Gl~~L~~vi 1333 (2067)
T KOG1822|consen 1254 PRWPTRVFAAECVLRIINVCEAVSAHFDMALASEHKLENLERNDYLVLHLSDLIRMSFMAATSDNSQLRLAGLESLEEVI 1333 (2067)
T ss_pred cccchHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHhcCchhhhhhccHHHHHHHH
Confidence 4699999988888744332211 1 11 1224445555567889999999999999998
Q ss_pred HHhCh----hH--------HhhhhHHHHHhh-ccCCChHHHHHHHHHHHHHhhh-cChH-HHHhhHHHHHHhhccCCCC
Q 009632 465 EEFGP----EW--------AMQHITPQVLEM-INNPHYLYRMTILRAISLLAPV-MGSE-ITCSRLLPVVINASKDRYL 528 (530)
Q Consensus 465 ~~~~~----~~--------~~~~i~~~l~~~-~~d~~~~vr~~a~~~l~~i~~~-~~~~-~~~~~~~p~l~~~l~D~~~ 528 (530)
..+.. ++ ++..+=..+... ..|...+|-..|++..+.++.. +-.+ --...+...|..-+++..+
T Consensus 1334 ~~fSsvpEPeFpGh~iLEQ~qAqvgsAlrpAF~~dts~dv~a~acqVcS~wigsgv~~dl~dl~rVhqLLvssl~k~~~ 1412 (2067)
T KOG1822|consen 1334 KRFSSVPEPEFPGHSILEQFQAQVGSALRPAFSDDTSPDVTAKACQVCSTWIGSGVARDLSDLSRVHQLLVSSLDKSQS 1412 (2067)
T ss_pred hccCCCCCCCCCchhHHHHHHHHHHHHhchhccCCCChHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhcccCc
Confidence 87732 21 112222333333 3466888999999988876542 2121 1245566666666665544
No 146
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.82 E-value=0.017 Score=62.55 Aligned_cols=322 Identities=15% Similarity=0.125 Sum_probs=165.7
Q ss_pred hcCCccchhHHHHhHhhhhcC----CCCh--HHHHHHHHHHHh---hcCCC-Ch--hHHHHHHHHHHHHHhhh--c---c
Q 009632 134 AAGEWFTARVSACGLFHIAYP----SAPD--ILKTELRSIYTQ---LCQDD-MP--MVRRSAASNLGKFAATV--E---P 196 (530)
Q Consensus 134 ~~~~~~~~r~~~~~~l~~l~~----~~~~--~~~~~l~~~l~~---l~~d~-~~--~vR~~a~~~l~~l~~~~--~---~ 196 (530)
+++++..+|...+-|++.+.. ..+- ....++...+.. .+.|. +| .-+...++.+..+...+ . .
T Consensus 59 L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d~ 138 (1266)
T KOG1525|consen 59 LKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLEDC 138 (1266)
T ss_pred hcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccch
Confidence 456677889877666666543 3321 244555544443 23333 33 33444445554443111 1 1
Q ss_pred hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHH-hc---CCCCHHHHHHHHHHHHHHHHHh
Q 009632 197 AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVN-FS---QDKSWRVRYMVANQLYELCEAV 272 (530)
Q Consensus 197 ~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~-~~---~d~~~~vr~~~~~~l~~l~~~~ 272 (530)
+.....++..+..+..++-+.--..-...+..+.... +.....++..+.. +. .|....-+..+-..+...+..+
T Consensus 139 ~e~~~~~f~~f~d~~~~~~~~~v~~~~~i~~~li~e~--d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~ 216 (1266)
T KOG1525|consen 139 QELVHELFRTFFDLARKGHPKKVFNMLDIAIMLITEE--DTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADNL 216 (1266)
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhh
Confidence 3344556666666665554332222222222222111 1222333333332 22 2333344444444444444332
Q ss_pred CCcccccchHHHHHHhcC-CC--cHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccc
Q 009632 273 GPEPTRMDLVPAYVRLLR-DN--EAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL 349 (530)
Q Consensus 273 ~~~~~~~~l~~~l~~~l~-d~--~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~ 349 (530)
.. .+-..+.+.+. +. -..++.....-+-.+... .+ ..+..++|.+..-+...+..+|..+...++.+...
T Consensus 217 ~~-----~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~-~p-~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~ 289 (1266)
T KOG1525|consen 217 ED-----TIANFLNSCLTEYKSRQSSLKIKYHELILELWRI-AP-QLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSD 289 (1266)
T ss_pred ch-----hHHHHHHHHHhhccccccchhhHHHHHHHHHHHh-hH-HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhc
Confidence 22 12222222221 11 112222222223333221 11 22356778887777778889999999999988665
Q ss_pred cCHHHH--HHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 009632 350 LGKDAT--IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 427 (530)
Q Consensus 350 ~~~~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~ 427 (530)
-+...+ .+.++..++..+.|.+.+||..+++...++...-..-.-...+.-.+.....|.+.++|...+-....+.+
T Consensus 290 ~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~- 368 (1266)
T KOG1525|consen 290 KDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKASTILLALRERDLDEDVRVRTQVVIVACDVMK- 368 (1266)
T ss_pred chhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhHHHHHHHHHhhcCChhhhheeeEEEEEeehhH-
Confidence 544333 56777888888999999999999998888765422111112233334334444444444443222222221
Q ss_pred hChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Q 009632 428 LGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE 466 (530)
Q Consensus 428 ~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 466 (530)
+....... ++..+.+.+.|+.+.||..|...|.++++.
T Consensus 369 ~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 369 FKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred hhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 11222223 666777778999999999999999999984
No 147
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=97.73 E-value=0.0065 Score=60.57 Aligned_cols=221 Identities=16% Similarity=0.144 Sum_probs=140.2
Q ss_pred HHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHH--HhcC-----CCCHHHHHHHHHHHHHHHHHhCC
Q 009632 202 DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIV--NFSQ-----DKSWRVRYMVANQLYELCEAVGP 274 (530)
Q Consensus 202 ~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~--~~~~-----d~~~~vr~~~~~~l~~l~~~~~~ 274 (530)
+.++.++-...|++.+|-..|-..+..+...+.+..+...++..+. ..-. --++.+|..+...|..-....
T Consensus 237 ~~~~~~liAsad~~~~V~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa-- 314 (501)
T PF13001_consen 237 ERFPPLLIASADSNSSVSDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIAA-- 314 (501)
T ss_pred hHHhheeeEEeCCcchHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHHH--
Confidence 4555555566888889999999999888877776666666665555 2111 135667776665555432221
Q ss_pred cccccchHHHHHHhcCCC--cHHHHHHHHHHH---HHHHHhhCHHHHHhhhhHhHh----Hhcc--------CCcHHHHH
Q 009632 275 EPTRMDLVPAYVRLLRDN--EAEVRIAAAGKV---TKFCRILNPELAIQHILPCVK----ELSS--------DSSQHVRS 337 (530)
Q Consensus 275 ~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l---~~~~~~~~~~~~~~~l~~~l~----~~~~--------d~~~~vr~ 337 (530)
.....++..+...+..+ +..+|..+++.+ ......+++... +.+-|.+. ...+ ..+...|.
T Consensus 315 -~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l-~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~ 392 (501)
T PF13001_consen 315 -TSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQIL-KLLRPVILSQGWPLIQDSSSQSNSSEDIELRS 392 (501)
T ss_pred -hCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHH-HHHHHHHHhcCccccccccccCCCcccHHHHH
Confidence 11245666666677666 567888888888 777776666532 23333332 2221 23568999
Q ss_pred HHHHHHHhhccccCHHH-HHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHH-----HhhHHH-HHHHHhcCCC
Q 009632 338 ALASVIMGMAPLLGKDA-TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL-----SQSLLP-AIVELAEDRH 410 (530)
Q Consensus 338 ~~~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-----~~~l~~-~l~~~~~~~~ 410 (530)
.+.++++.++.....-. -.-.++..++..|.++.+++|..+-++|..+...+....- ....+. .+.....+..
T Consensus 393 ~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~ 472 (501)
T PF13001_consen 393 LAYETLGLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEV 472 (501)
T ss_pred HHHHHHHHHHccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchh
Confidence 99999999988765432 1235667777778889999999999999999877653211 111111 2223334556
Q ss_pred hHHHHHHHHHHHHHHh
Q 009632 411 WRVRLAIIEYIPLLAS 426 (530)
Q Consensus 411 ~~~R~~~~~~l~~l~~ 426 (530)
..+|..|+.+...+..
T Consensus 473 ~~~R~~avk~an~~fp 488 (501)
T PF13001_consen 473 RSCRYAAVKYANACFP 488 (501)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 7788888888877654
No 148
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=97.72 E-value=0.017 Score=51.88 Aligned_cols=223 Identities=12% Similarity=0.116 Sum_probs=100.4
Q ss_pred HhhcCCchhHHHHHHHHHHHHhhhcCchhh----hhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh--CCcccccchH
Q 009632 209 DLTQDDQDSVRLLAVEGCAALGKLLEPQDC----VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV--GPEPTRMDLV 282 (530)
Q Consensus 209 ~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~--~~~~~~~~l~ 282 (530)
..++++++.+|..|+..|+.+...+++... .+.++..+..-+.| +..-..++.++..+...- +.+. ...++
T Consensus 6 ~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D--~~~~~~~l~gl~~L~~~~~~~~~~-~~~i~ 82 (262)
T PF14500_consen 6 EYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDD--HACVQPALKGLLALVKMKNFSPES-AVKIL 82 (262)
T ss_pred hhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhcc--HhhHHHHHHHHHHHHhCcCCChhh-HHHHH
Confidence 345556666666666666666666654322 22234444444432 222222244554444211 1111 11222
Q ss_pred HHHHHhcC--CCcHHHHHHHHHHHHHHHHhhCHH--HHHhhhhHhHhHhc-cCCcHHHHHHHHHHHHhhccccCHHHHHH
Q 009632 283 PAYVRLLR--DNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELS-SDSSQHVRSALASVIMGMAPLLGKDATIE 357 (530)
Q Consensus 283 ~~l~~~l~--d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~~-~d~~~~vr~~~~~~l~~l~~~~~~~~~~~ 357 (530)
..+.+... .-....|..+.+.+..+.+..... .+...++..+.+.+ ..++||.-..+.+.+..+...+....+.+
T Consensus 83 ~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~~e 162 (262)
T PF14500_consen 83 RSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISEFAE 162 (262)
T ss_pred HHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccchhHH
Confidence 22222221 112456777777776666543221 11122333333333 35677776666666666665554333444
Q ss_pred hHHHHHHHhh--------cCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhC
Q 009632 358 QLLPIFLSLL--------KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG 429 (530)
Q Consensus 358 ~l~~~l~~~l--------~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~ 429 (530)
.+...+.... +|+..-.|+.-..+|..... ....+.+..+|.+.+-+.++...++..+++++...+..+|
T Consensus 163 ~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~--s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~ 240 (262)
T PF14500_consen 163 DLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS--STPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYG 240 (262)
T ss_pred HHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc--CcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCC
Confidence 4433333332 12211122222222222111 1123345566666666666666666666666666666666
Q ss_pred hhhHHHH
Q 009632 430 VGFFDDK 436 (530)
Q Consensus 430 ~~~~~~~ 436 (530)
.+...++
T Consensus 241 ~~~~~~~ 247 (262)
T PF14500_consen 241 ADSLSPH 247 (262)
T ss_pred HHHHHHH
Confidence 5544433
No 149
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.71 E-value=0.00075 Score=68.13 Aligned_cols=142 Identities=15% Similarity=0.144 Sum_probs=69.1
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcch---hhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc--h
Q 009632 162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA---HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP--Q 236 (530)
Q Consensus 162 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~ 236 (530)
.++.|.+.+......-.+|.....+|+.+..+.|.+ ...+.++|.+.+.++=++..||..+.+++..+....+. .
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t 945 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQT 945 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccch
Confidence 334444444444333344555555555555544442 23455555555555555555555555555544444332 2
Q ss_pred hhhhccHHHHHHhcCCCC---HHHHHHHHHHHHHHHHHhCC---cccccchHHHHHHhcCCCcHHHHHHHHHH
Q 009632 237 DCVAHILPVIVNFSQDKS---WRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGK 303 (530)
Q Consensus 237 ~~~~~~~~~l~~~~~d~~---~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~ 303 (530)
.+.+.++|.+..+..|.+ -.||..+.++++.+.+..+. ..+.+.++..+...+.|+.--||+.|+.+
T Consensus 946 ~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 946 EHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred HHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 334445555555544433 44555555555555553322 23344455555555555555555555544
No 150
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=97.69 E-value=0.014 Score=54.15 Aligned_cols=173 Identities=17% Similarity=0.186 Sum_probs=102.0
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHH
Q 009632 166 SIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPV 245 (530)
Q Consensus 166 ~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ 245 (530)
.++...+..+++.||..++.++|-++-. .+ ......++.+.+.++.+++.||..|++++..+....|...+...-.
T Consensus 30 ~lI~P~v~~~~~~vR~~al~cLGl~~Ll-d~-~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~-- 105 (298)
T PF12719_consen 30 SLILPAVQSSDPAVRELALKCLGLCCLL-DK-ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESD-- 105 (298)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHh-Ch-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhc--
Confidence 3444677788889999999999888753 22 2234456666666666678899999988888887776532211000
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHh--hCH-HHHHhhhhH
Q 009632 246 IVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI--LNP-ELAIQHILP 322 (530)
Q Consensus 246 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~--~~~-~~~~~~l~~ 322 (530)
.+ .......++..+...+.+.+++++..+++++..+.-. +.. ..+...++-
T Consensus 106 -------~~-------------------~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll 159 (298)
T PF12719_consen 106 -------ND-------------------ESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLL 159 (298)
T ss_pred -------cC-------------------ccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 00 1222345667777777777788888888888776532 222 222233322
Q ss_pred hHhHhccCCcHHHHHHHHHHHHhhccccC--HHHHHHhHHHHHHHhhc
Q 009632 323 CVKELSSDSSQHVRSALASVIMGMAPLLG--KDATIEQLLPIFLSLLK 368 (530)
Q Consensus 323 ~l~~~~~d~~~~vr~~~~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~ 368 (530)
..-.-....+.++|+...-.+..++..-. ...+...++|.+..+.+
T Consensus 160 ~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~ 207 (298)
T PF12719_consen 160 LYFNPSTEDNQRLRQCLSVFFPVYASSSPENQERLAEAFLPTLRTLSN 207 (298)
T ss_pred HHcCcccCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh
Confidence 22222233456788777777777765432 12334445555555444
No 151
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=97.67 E-value=0.01 Score=54.99 Aligned_cols=156 Identities=16% Similarity=0.192 Sum_probs=94.2
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHH-----------HH
Q 009632 287 RLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD-----------AT 355 (530)
Q Consensus 287 ~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~-----------~~ 355 (530)
..+...++.||..+++++|-++-.-. + .....++.+...++..+..+|..+++++..+....|.+ ..
T Consensus 34 P~v~~~~~~vR~~al~cLGl~~Lld~-~-~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~ 111 (298)
T PF12719_consen 34 PAVQSSDPAVRELALKCLGLCCLLDK-E-LAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVD 111 (298)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhCh-H-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccch
Confidence 45566666777777777766654322 1 12333444444444446667777776666665544432 22
Q ss_pred HHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhh--hchhHHHhhHHHHHHHHhc----CCChHHHHHHHHHHHHHHhhhC
Q 009632 356 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV--IGIDLLSQSLLPAIVELAE----DRHWRVRLAIIEYIPLLASQLG 429 (530)
Q Consensus 356 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~--~~~~~~~~~l~~~l~~~~~----~~~~~~R~~~~~~l~~l~~~~~ 429 (530)
...+...+...+.+.++++|..+++.+..+.-. +.. .+.++..|.-..- ..+.+.|+..-.++...+..-.
T Consensus 112 ~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~ 188 (298)
T PF12719_consen 112 SKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSSP 188 (298)
T ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCCH
Confidence 356778888899989999999999999987532 222 1244444433322 3356888888888887775433
Q ss_pred --hhhHHHHHHHHHHHHhcC
Q 009632 430 --VGFFDDKLGALCMQWLQD 447 (530)
Q Consensus 430 --~~~~~~~~~~~l~~~l~d 447 (530)
.+.+.+-++|.+..+...
T Consensus 189 ~~Q~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 189 ENQERLAEAFLPTLRTLSNA 208 (298)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 233456677777776543
No 152
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.58 E-value=0.084 Score=58.35 Aligned_cols=171 Identities=15% Similarity=0.147 Sum_probs=114.2
Q ss_pred HHHhHhhhhcCCCChHHHHHHHHHHHhhcCCC----ChhHHHHHHH--HHHHHHhh---------hcchhhHHHHHHHHH
Q 009632 144 SACGLFHIAYPSAPDILKTELRSIYTQLCQDD----MPMVRRSAAS--NLGKFAAT---------VEPAHLKTDIMSIFE 208 (530)
Q Consensus 144 ~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~d~----~~~vR~~a~~--~l~~l~~~---------~~~~~~~~~l~~~l~ 208 (530)
.+..+++.++++++..+.-.++..+.+..... ...|+..+.. ++..+.++ .+++.+...-+.++.
T Consensus 803 ta~~lfg~vfp~v~~k~~~~ile~~~esi~~sk~~r~qsV~~~a~t~~al~s~lk~l~e~~~~~~lg~e~v~~~~~~l~~ 882 (2067)
T KOG1822|consen 803 TAVSLFGSVFPHVNNKIRLSILEHFPESIKQSKSARQQSVQVNAVTWQALLSALKYLAEFKGATSLGPEEVRSSALTLIV 882 (2067)
T ss_pred HHHHHHHHhccCccHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHh
Confidence 45667777888888877777777777655432 2234444333 33333322 233444444556667
Q ss_pred HhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHhCC---cccccchHHH
Q 009632 209 DLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGP---EPTRMDLVPA 284 (530)
Q Consensus 209 ~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d-~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~ 284 (530)
..+..+++..|..+.++++.++...+...+...+.+.+..-+.+ .++..|..-.-++|.+-+..|. ......-+..
T Consensus 883 ~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~i 962 (2067)
T KOG1822|consen 883 NSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTSVSI 962 (2067)
T ss_pred hhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccHHHH
Confidence 77788899999999999999999999877777666666555554 5565666666667777666543 3333344557
Q ss_pred HHHhcCCCcH-HHHHHHHHHHHHHHHhhCHH
Q 009632 285 YVRLLRDNEA-EVRIAAAGKVTKFCRILNPE 314 (530)
Q Consensus 285 l~~~l~d~~~-~vr~~a~~~l~~~~~~~~~~ 314 (530)
++.+..|+.+ .|+..++.++..+....++-
T Consensus 963 llal~~Ds~~p~VqtwSL~al~~i~~s~~p~ 993 (2067)
T KOG1822|consen 963 LLALATDSTSPVVQTWSLHALALILDSSGPM 993 (2067)
T ss_pred HHHHhhcCCCchhhhhHHHHHHHHHcCCCce
Confidence 7777788774 99999999999998776654
No 153
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=97.44 E-value=0.13 Score=50.02 Aligned_cols=167 Identities=14% Similarity=0.033 Sum_probs=107.8
Q ss_pred HHHHHHHhcChhHHHHHHHhhcHHHHHHhhCh--Hhhhhcccccccc-ccCCchHHHHHHHHHHhcccccCCCccchhcc
Q 009632 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGE--ERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVL 87 (530)
Q Consensus 11 ~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l 87 (530)
+..++..+.+.|...|..+++.|.-++...++ +...+.|+..+.. +.|-++.||+.|..+|..+-..-++++ ..+
T Consensus 93 ~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee--n~~ 170 (885)
T COG5218 93 FYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE--NRI 170 (885)
T ss_pred HHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH--HHH
Confidence 56788889999999999999999999888876 6666677776666 788999999999999988765434332 333
Q ss_pred hhHHHh-hhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhH-HHHhHhhhhcCCCChHHHHHHH
Q 009632 88 LPPLET-LCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARV-SACGLFHIAYPSAPDILKTELR 165 (530)
Q Consensus 88 ~~~l~~-l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~-~~~~~l~~l~~~~~~~~~~~l~ 165 (530)
..+|.. +.+|++.+||..|+--+..=- --.|.+.+-+.|-+-..|. .=.+++..+......+..+.++
T Consensus 171 ~n~l~~~vqnDPS~EVRr~allni~vdn----------sT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~lsi~kri~ 240 (885)
T COG5218 171 VNLLKDIVQNDPSDEVRRLALLNISVDN----------STYPCILERARDVSGANRRMVYERCLPRIGDLKSLSIDKRIL 240 (885)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHeeeCC----------CcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhccccceeh
Confidence 344444 457899999998864332211 1234444434443323333 2344444443332222333333
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHHH
Q 009632 166 SIYTQLCQDDMPMVRRSAASNLGKF 190 (530)
Q Consensus 166 ~~l~~l~~d~~~~vR~~a~~~l~~l 190 (530)
++...+.|.+..||.++...+..-
T Consensus 241 -l~ewgl~dRe~sv~~a~~d~ia~~ 264 (885)
T COG5218 241 -LMEWGLLDREFSVKGALVDAIASA 264 (885)
T ss_pred -hhhhcchhhhhhHHHHHHHHHHHH
Confidence 445567788888998888877653
No 154
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=97.44 E-value=0.03 Score=53.17 Aligned_cols=126 Identities=17% Similarity=0.180 Sum_probs=86.7
Q ss_pred ChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHh----c--CCChHHHHHHHHHHHHHHhhhC---------------
Q 009632 371 FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA----E--DRHWRVRLAIIEYIPLLASQLG--------------- 429 (530)
Q Consensus 371 ~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~----~--~~~~~~R~~~~~~l~~l~~~~~--------------- 429 (530)
....|.+|.+.+..+++..+.... +.+...+..++ + ..+|+-+.+|+..++.++....
T Consensus 224 ~~TrR~AA~dfl~~L~~~~~~~v~-~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v 302 (370)
T PF08506_consen 224 SDTRRRAACDFLRSLCKKFEKQVT-SILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDV 302 (370)
T ss_dssp --SHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-H
T ss_pred cCCcHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccH
Confidence 456889999999999988764321 22222222222 2 3479999999999999987542
Q ss_pred hhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhccCCChHHHHHHHHHH
Q 009632 430 VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAI 499 (530)
Q Consensus 430 ~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l 499 (530)
.++|..+++|-+. .-.+..+-+|..|++.+..+...+.++ ....++|.+.+++++++.-|+..|+.++
T Consensus 303 ~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~-~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 303 VDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKE-QLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HH-HHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHH-HHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 2345667777776 333567889999999998887777655 3467999999999999999999998765
No 155
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.41 E-value=0.0057 Score=62.90 Aligned_cols=184 Identities=16% Similarity=0.061 Sum_probs=123.3
Q ss_pred hhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChH----HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc-
Q 009632 122 LVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP- 196 (530)
Q Consensus 122 ~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~----~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~- 196 (530)
+...+++.+.. ..-|.-|..+++.+...-+-. .-=.|+|.++++++++..+.|-..+-.-+.+...=+.
T Consensus 473 QLPiVLQVLLS------QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SC 546 (1387)
T KOG1517|consen 473 QLPIVLQVLLS------QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSC 546 (1387)
T ss_pred hcchHHHHHHH------HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchh
Confidence 34445555542 123556777777665433222 1234889999999999999999888877777653211
Q ss_pred --hhhHHHHHHHHHHhhcC-C--chhHHHHHHHHHHHHhhhcCc---hhhhhccHHHHHHhcCCC-CHHHHHHHHHHHHH
Q 009632 197 --AHLKTDIMSIFEDLTQD-D--QDSVRLLAVEGCAALGKLLEP---QDCVAHILPVIVNFSQDK-SWRVRYMVANQLYE 267 (530)
Q Consensus 197 --~~~~~~l~~~l~~~~~d-~--~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~~~d~-~~~vr~~~~~~l~~ 267 (530)
+.+.+....++.+.+.+ . +++-|..|+-.|+.+...+.- +.+...++..+.+.++|+ .|-.|.-++-+||.
T Consensus 547 Q~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~ 626 (1387)
T KOG1517|consen 547 QADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGR 626 (1387)
T ss_pred HHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 22233233344445555 2 358899999999999887542 334455777777888884 79999999999999
Q ss_pred HHHHhCCccc---ccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhh
Q 009632 268 LCEAVGPEPT---RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL 311 (530)
Q Consensus 268 l~~~~~~~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~ 311 (530)
+=+.+...-. ....-..+..++.|+.|+||.+|+-+|+.+....
T Consensus 627 LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 627 LWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred HhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhccc
Confidence 8765432211 1233455677889999999999999999998763
No 156
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=97.40 E-value=0.018 Score=59.81 Aligned_cols=219 Identities=14% Similarity=0.115 Sum_probs=109.7
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCc-HHHHHHHHHHHHHHHHhh-CH-HHHHhhhhHhHhHhcc
Q 009632 253 KSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNE-AEVRIAAAGKVTKFCRIL-NP-ELAIQHILPCVKELSS 329 (530)
Q Consensus 253 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~-~~-~~~~~~l~~~l~~~~~ 329 (530)
..+..|....++++..+. ..-+..+.+.+.... ... .+...+..+.... .+ ......+.+.+..-..
T Consensus 376 ~~~~~r~~~lDal~~aGT--------~~av~~i~~~I~~~~~~~~--ea~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~ 445 (618)
T PF01347_consen 376 KKEQARKIFLDALPQAGT--------NPAVKFIKDLIKSKKLTDD--EAAQLLASLPFHVRRPTEELLKELFELAKSPKV 445 (618)
T ss_dssp --HHHHHHHHHHHHHH-S--------HHHHHHHHHHHHTT-S-HH--HHHHHHHHHHHT-----HHHHHHHHHHHT-HHH
T ss_pred cHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHcCCCCHH--HHHHHHHHHHhhcCCCCHHHHHHHHHHHhCccc
Confidence 356677777777766552 222333444443322 111 1333343333322 22 2222333333321111
Q ss_pred CCcHHHHHHHHHHHHhhcccc-CH---------------HHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhH
Q 009632 330 DSSQHVRSALASVIMGMAPLL-GK---------------DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL 393 (530)
Q Consensus 330 d~~~~vr~~~~~~l~~l~~~~-~~---------------~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 393 (530)
..+..++.+++-+++.+.... .. +.+.+.+...+.......+...+..++.+|+++..
T Consensus 446 ~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~------ 519 (618)
T PF01347_consen 446 KNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH------ 519 (618)
T ss_dssp HT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-------
T ss_pred cCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC------
Confidence 244567777777776654321 11 12233444444444456778889999999988753
Q ss_pred HHhhHHHHHHHHhcCC---ChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh
Q 009632 394 LSQSLLPAIVELAEDR---HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE 470 (530)
Q Consensus 394 ~~~~l~~~l~~~~~~~---~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~ 470 (530)
...++.+..++.+. +..+|.+|+.++..++... ++...+.++|++.+- ....+||.+|+..|-. .-. .
T Consensus 520 --~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~-~~~v~~~l~~I~~n~--~e~~EvRiaA~~~lm~---~~P-~ 590 (618)
T PF01347_consen 520 --PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC-PEKVREILLPIFMNT--TEDPEVRIAAYLILMR---CNP-S 590 (618)
T ss_dssp --GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT--HHHHHHHHHHHHH-T--TS-HHHHHHHHHHHHH---T----
T ss_pred --chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC-cHHHHHHHHHHhcCC--CCChhHHHHHHHHHHh---cCC-C
Confidence 35677777776665 6789999999998774432 223334444444332 2456799999877533 211 1
Q ss_pred HHhhhhHHHHHhh-ccCCChHHHHHHHHHH
Q 009632 471 WAMQHITPQVLEM-INNPHYLYRMTILRAI 499 (530)
Q Consensus 471 ~~~~~i~~~l~~~-~~d~~~~vr~~a~~~l 499 (530)
..++..+... -.+++..|+......|
T Consensus 591 ---~~~l~~i~~~l~~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 591 ---PSVLQRIAQSLWNEPSNQVASFVYSHL 617 (618)
T ss_dssp ---HHHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHhhCchHHHHHHHHHhc
Confidence 2234444443 3678888887766554
No 157
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=97.38 E-value=0.033 Score=49.45 Aligned_cols=166 Identities=13% Similarity=0.091 Sum_probs=104.6
Q ss_pred hhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChHHHHHHHHHHHh---
Q 009632 94 LCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQ--- 170 (530)
Q Consensus 94 l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~--- 170 (530)
+.+..++......+++|..++..-. .....+...+..+.+.+....+..+.+++..++..-+..+ +.+.+.+..
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~--~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f-~~L~~~L~~~~~ 85 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKN--VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF-PFLQPLLLLLIL 85 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCc--cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH-HHHHHHHHHHHh
Confidence 5556677777777777777776532 3444566666666666665566667777777665433221 333333333
Q ss_pred ------hcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhh-cCCchhHHHHHHHHHHHHhhh--cCchhhhhc
Q 009632 171 ------LCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLT-QDDQDSVRLLAVEGCAALGKL--LEPQDCVAH 241 (530)
Q Consensus 171 ------l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~-~d~~~~vr~~a~~~l~~l~~~--~~~~~~~~~ 241 (530)
.-.+..++...+.+.++..++...+. ...++++.+...+ .+.++.++..+++++..+++. ++-...+..
T Consensus 86 r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~--~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w~v 163 (234)
T PF12530_consen 86 RIPSSFSSKDEFWECLISIAASIRDICCSRPD--HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAWKV 163 (234)
T ss_pred hcccccCCCcchHHHHHHHHHHHHHHHHhChh--hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 12355788888888889999887666 6778999999999 788889999999999999843 221222333
Q ss_pred cHHHHHHhcCCCCHHHHHHHHHHHHH
Q 009632 242 ILPVIVNFSQDKSWRVRYMVANQLYE 267 (530)
Q Consensus 242 ~~~~l~~~~~d~~~~vr~~~~~~l~~ 267 (530)
+.+.+ -.+..+.+-...+..+.-
T Consensus 164 l~~~l---~~~~rp~v~~~l~~l~~l 186 (234)
T PF12530_consen 164 LQKKL---SLDYRPLVLKSLCSLFAL 186 (234)
T ss_pred HHHhc---CCccchHHHHHHHHHHHH
Confidence 33322 334555555555444443
No 158
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=97.36 E-value=0.058 Score=55.48 Aligned_cols=151 Identities=15% Similarity=0.104 Sum_probs=87.6
Q ss_pred CcHHHHHHHHHHHHhhcccc-C---H--HHHHHhHHHHHHH----hhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHH
Q 009632 331 SSQHVRSALASVIMGMAPLL-G---K--DATIEQLLPIFLS----LLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP 400 (530)
Q Consensus 331 ~~~~vr~~~~~~l~~l~~~~-~---~--~~~~~~l~~~l~~----~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~ 400 (530)
++..+|..+.-+++.+.... . . ......+.+.+.. ..++.+...+..++.+||++..- ..++
T Consensus 409 ~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~--------~~i~ 480 (574)
T smart00638 409 KQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHP--------SSIK 480 (574)
T ss_pred ccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCCh--------hHHH
Confidence 45678888877777765421 1 0 1222344444444 44456777788888888886542 2333
Q ss_pred HHHHHhc---CCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhH
Q 009632 401 AIVELAE---DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHIT 477 (530)
Q Consensus 401 ~l~~~~~---~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~ 477 (530)
.+..++. +.+..+|..|+.++..++..... ...+.++|++.+ .+...+||.+|+..+-. . .+. ...+
T Consensus 481 ~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~-~v~~~l~~i~~n--~~e~~EvRiaA~~~lm~---t-~P~---~~~l 550 (574)
T smart00638 481 VLEPYLEGAEPLSTFIRLAAILALRNLAKRDPR-KVQEVLLPIYLN--RAEPPEVRMAAVLVLME---T-KPS---VALL 550 (574)
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCch-HHHHHHHHHHcC--CCCChHHHHHHHHHHHh---c-CCC---HHHH
Confidence 3333333 23578999999999988764433 233444454432 23567899999987643 2 111 2234
Q ss_pred HHHHhh-ccCCChHHHHHHHHHH
Q 009632 478 PQVLEM-INNPHYLYRMTILRAI 499 (530)
Q Consensus 478 ~~l~~~-~~d~~~~vr~~a~~~l 499 (530)
..+... -.+++..|+......|
T Consensus 551 ~~ia~~l~~E~~~QV~sfv~S~l 573 (574)
T smart00638 551 QRIAELLNKEPNLQVASFVYSHI 573 (574)
T ss_pred HHHHHHHhhcCcHHHHHHhHHhh
Confidence 444443 4577888887665543
No 159
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=97.29 E-value=0.19 Score=48.44 Aligned_cols=195 Identities=11% Similarity=0.109 Sum_probs=94.9
Q ss_pred HHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcCCCChhHHHHHH
Q 009632 105 KAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184 (530)
Q Consensus 105 ~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~ 184 (530)
..+..+-.+....+.++..++++-++..++.++...++... .... ..+ .....+..+++.+++-+...++
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~-----~~~~-~~~----~~~~~fl~lL~~~d~~i~~~a~ 122 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFH-----DDAL-LKK----KTWEPFFNLLNRQDQFIVHMSF 122 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHH-----HHhh-ccc----cchHHHHHHHcCCchhHHHHHH
Confidence 44455555666666667777777777777766432222211 1100 011 1223333466677888999999
Q ss_pred HHHHHHHhhhcc---hhhHHHHHHHHHHhhcCC-chhHHHHHHHHHHHHhhhcCc-hhh-hhccHHHHHHhcCCC--CHH
Q 009632 185 SNLGKFAATVEP---AHLKTDIMSIFEDLTQDD-QDSVRLLAVEGCAALGKLLEP-QDC-VAHILPVIVNFSQDK--SWR 256 (530)
Q Consensus 185 ~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~-~~~vr~~a~~~l~~l~~~~~~-~~~-~~~~~~~l~~~~~d~--~~~ 256 (530)
..++.++..-.. ....+.+++.+.+.+... +...+..++.++..+...-.- ..+ ....++.+..+++.. +.+
T Consensus 123 ~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Q 202 (429)
T cd00256 123 SILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQ 202 (429)
T ss_pred HHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHH
Confidence 999888764322 122334555666655543 345566677777777654221 111 122455555555432 223
Q ss_pred HHHHHHHHHHH--HHHHhCCcccccchHHHHHHhcCCCc-HHHHHHHHHHHHHHHH
Q 009632 257 VRYMVANQLYE--LCEAVGPEPTRMDLVPAYVRLLRDNE-AEVRIAAAGKVTKFCR 309 (530)
Q Consensus 257 vr~~~~~~l~~--l~~~~~~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~~~~ 309 (530)
....++-++=. +-...........++|.+.+.+++.. ..|-.-++..+..+..
T Consensus 203 l~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~ 258 (429)
T cd00256 203 LQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLIS 258 (429)
T ss_pred HHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence 33322222211 11110011112457777777776543 2233334444444443
No 160
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=97.29 E-value=0.056 Score=56.24 Aligned_cols=120 Identities=15% Similarity=0.150 Sum_probs=57.9
Q ss_pred chhHHHHHHHHHHHHhhhcCch----------------hhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccc
Q 009632 215 QDSVRLLAVEGCAALGKLLEPQ----------------DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR 278 (530)
Q Consensus 215 ~~~vr~~a~~~l~~l~~~~~~~----------------~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~ 278 (530)
++.++..|+-+++.+....-.. .+.+.+.+.+....+..+...+..++++||+++ .
T Consensus 448 ~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g--------~ 519 (618)
T PF01347_consen 448 SPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLG--------H 519 (618)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---------
T ss_pred ChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccC--------C
Confidence 3456777776666665432111 122222333333333445556666666666664 2
Q ss_pred cchHHHHHHhcCCC---cHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHh
Q 009632 279 MDLVPAYVRLLRDN---EAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMG 345 (530)
Q Consensus 279 ~~l~~~l~~~l~d~---~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~ 345 (530)
...++.+...+.+. ...+|.+|+.+|..+.... ++...+.++|.+.+- ..+..+|.++...+..
T Consensus 520 ~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~-~~~v~~~l~~I~~n~--~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 520 PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC-PEKVREILLPIFMNT--TEDPEVRIAAYLILMR 586 (618)
T ss_dssp GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT--HHHHHHHHHHHHH-T--TS-HHHHHHHHHHHHH
T ss_pred chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC-cHHHHHHHHHHhcCC--CCChhHHHHHHHHHHh
Confidence 34556666655544 4566777777666553322 333334555555432 2234566666544433
No 161
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.26 E-value=0.013 Score=52.02 Aligned_cols=163 Identities=12% Similarity=0.105 Sum_probs=108.2
Q ss_pred HHHHhhcCCChHHHHHHHHhhHHhhhhhch--hHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHH--HHH
Q 009632 362 IFLSLLKDEFPDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD--DKL 437 (530)
Q Consensus 362 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~--~~~ 437 (530)
-.+..|.+++|......+..+..+...... ......++..+.+.++++...+-.+|+.+++.+.+.++..... +.+
T Consensus 92 ~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~l 171 (334)
T KOG2933|consen 92 QALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDL 171 (334)
T ss_pred HHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666676666666666665543321 1112456666777788888889999999999998888765543 223
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcCh----HHHHh
Q 009632 438 GALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS----EITCS 513 (530)
Q Consensus 438 ~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~----~~~~~ 513 (530)
+-.++.--.+...-||+.|-++|..++....+ ..+++.+...+.+.+.++|..++..+.+....+|= +.+..
T Consensus 172 v~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp----~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~~~~~ 247 (334)
T KOG2933|consen 172 VTQLLHKASQDNRFVREDAEKALVAMVNHVTP----QKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVLLQGSC 247 (334)
T ss_pred HHHHHhhhcccchHHHHHHHHHHHHHHhccCh----HHHHHHHHHHHhhhchhhhhhhhccccccceeccccchhhHhHH
Confidence 33333333455667899999999888877653 34667777778888889999888888888777652 22333
Q ss_pred hHHHHHHhhccCCCC
Q 009632 514 RLLPVVINASKDRYL 528 (530)
Q Consensus 514 ~~~p~l~~~l~D~~~ 528 (530)
...+.+..-+.|+.|
T Consensus 248 dl~~a~~~~~~d~Lp 262 (334)
T KOG2933|consen 248 DLSRAAQEQGSDKLP 262 (334)
T ss_pred HHHHHHHhhhccccc
Confidence 444666666666655
No 162
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.21 E-value=0.0086 Score=53.17 Aligned_cols=173 Identities=15% Similarity=0.129 Sum_probs=108.1
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH--HHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhH
Q 009632 282 VPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQL 359 (530)
Q Consensus 282 ~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l 359 (530)
+...+..|.+.+|+....++..+..++..-... ..+..++..+.+-+++....|-.+++.++..+.+.++... .+.+
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i-~~~l 168 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSI-DQEL 168 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 333455566666777766666666665433211 1223333344444556556666777777777666555322 2233
Q ss_pred HHHHHHhh---cCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCh----hh
Q 009632 360 LPIFLSLL---KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV----GF 432 (530)
Q Consensus 360 ~~~l~~~l---~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~----~~ 432 (530)
-..+..++ .+++..||+.|-.+|..+.....+. .+++.+...+++.+.++|..+..++......+|. .+
T Consensus 169 d~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~----~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~~ 244 (334)
T KOG2933|consen 169 DDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ----KLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVLLQ 244 (334)
T ss_pred HHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH----HHHHHHHHHHhhhchhhhhhhhccccccceeccccchhhH
Confidence 33333333 3556789999999999998887764 4555665667888999999999999888777762 23
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 009632 433 FDDKLGALCMQWLQDKVYSIRDAAANN 459 (530)
Q Consensus 433 ~~~~~~~~l~~~l~d~~~~Vr~~a~~~ 459 (530)
+.....+.+.+-+.|+-+.+|++|=..
T Consensus 245 ~~~dl~~a~~~~~~d~Lp~~~~~a~~~ 271 (334)
T KOG2933|consen 245 GSCDLSRAAQEQGSDKLPELREAARFV 271 (334)
T ss_pred hHHHHHHHHHhhhcccccccccchhHH
Confidence 445666777777788777777555433
No 163
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.33 Score=48.85 Aligned_cols=380 Identities=12% Similarity=0.020 Sum_probs=207.1
Q ss_pred HHhHhhhhcCCCChHHHHHHHHHHHhhcC-----C---CChhHHHHHHHHHHHHHhhhcch-----hhHHHHHHHHHHhh
Q 009632 145 ACGLFHIAYPSAPDILKTELRSIYTQLCQ-----D---DMPMVRRSAASNLGKFAATVEPA-----HLKTDIMSIFEDLT 211 (530)
Q Consensus 145 ~~~~l~~l~~~~~~~~~~~l~~~l~~l~~-----d---~~~~vR~~a~~~l~~l~~~~~~~-----~~~~~l~~~l~~~~ 211 (530)
+..++..+..+-++...+.+++.+...+. + .++.-.+.|...++.+...+.+. .....+++...-..
T Consensus 390 al~fl~~~~sKrke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f 469 (970)
T COG5656 390 ALFFLIISKSKRKEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAF 469 (970)
T ss_pred HHHHHHHHhcccchhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhh
Confidence 33444444445555567778888877662 2 23455667777777777644432 12233556666677
Q ss_pred cCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcc-cccchHHHHHH---
Q 009632 212 QDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP-TRMDLVPAYVR--- 287 (530)
Q Consensus 212 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~-~~~~l~~~l~~--- 287 (530)
.++.--.|..|.+.+..+..-++.......+.....+.+++.+-.|+-.++.++..+...-.-.. ...++.+...+
T Consensus 470 ~s~ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLs 549 (970)
T COG5656 470 RSNYGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLS 549 (970)
T ss_pred cCcccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHH
Confidence 88888999999999999987777766666666777777888888899999998887775432211 22333333333
Q ss_pred hcCCCcHHHHHHHHHHH-HHHHHhhCHH--HHHhhhhHhH----hHhccCC---------cHHHHHHHHHHHHhhccccC
Q 009632 288 LLRDNEAEVRIAAAGKV-TKFCRILNPE--LAIQHILPCV----KELSSDS---------SQHVRSALASVIMGMAPLLG 351 (530)
Q Consensus 288 ~l~d~~~~vr~~a~~~l-~~~~~~~~~~--~~~~~l~~~l----~~~~~d~---------~~~vr~~~~~~l~~l~~~~~ 351 (530)
+-++=+-++-...++.+ +.+.+.+.+- .+...+...+ ..++.++ ......++++++.++.-.+.
T Consensus 550 LSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSle 629 (970)
T COG5656 550 LSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLE 629 (970)
T ss_pred hcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcc
Confidence 33444444444444333 2233322221 1222333322 2222222 12233444455555443333
Q ss_pred HH-----HHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhc-hhHHHhhHHHHHHHHhcCCCh-HHHHHHHHHHHHH
Q 009632 352 KD-----ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG-IDLLSQSLLPAIVELAEDRHW-RVRLAIIEYIPLL 424 (530)
Q Consensus 352 ~~-----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-~~~~~~~l~~~l~~~~~~~~~-~~R~~~~~~l~~l 424 (530)
.. .....+.|.+.-.++++-.++-..+++.+....-... ...+...+...+.+...++.. ..-..+.-++.++
T Consensus 630 n~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf~skeI~pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nf 709 (970)
T COG5656 630 NRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDGYTFMSKEIEPIMWGIFELLLNLLIDEITAVYSEEVADALDNF 709 (970)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHHhcccccchhhhHHHHHHHHHHH
Confidence 21 2344566777777777767777777666654321110 012223444445555555442 3345566667776
Q ss_pred HhhhChhh-----HHHHHHHHHHHHhcCCcH--HHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhc------cCCChHH
Q 009632 425 ASQLGVGF-----FDDKLGALCMQWLQDKVY--SIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI------NNPHYLY 491 (530)
Q Consensus 425 ~~~~~~~~-----~~~~~~~~l~~~l~d~~~--~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~------~d~~~~v 491 (530)
...-+.++ +..-+..+....+...+. +=+..+++.+..++-+++.+.. ++.+|.+.+.. .|+....
T Consensus 710 ityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd~Ll-~qy~plfi~vags~l~~~dElg~~ 788 (970)
T COG5656 710 ITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRDELL-SQYLPLFISVAGSGLKMIDELGPA 788 (970)
T ss_pred HHhCccccccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccchhH-HhhhHHHHHHHhhhhhccccccch
Confidence 65443333 334456666666665444 5578888888888888776533 33555554432 3444444
Q ss_pred HHHHHHHHHHHhhhcChH-----HHHhhHHHHHHhhccC
Q 009632 492 RMTILRAISLLAPVMGSE-----ITCSRLLPVVINASKD 525 (530)
Q Consensus 492 r~~a~~~l~~i~~~~~~~-----~~~~~~~p~l~~~l~D 525 (530)
+..+++.+-+-.-.-+.+ .......+++..+.++
T Consensus 789 sv~aleliinnli~~P~eTLqiLe~qg~l~~FF~~wf~~ 827 (970)
T COG5656 789 SVYALELIINNLILRPKETLQILEEQGYLQSFFEKWFSQ 827 (970)
T ss_pred hhhHHHHHHHHHhcChHHHHHHHHHcCcHHHHHHHHHhc
Confidence 555555544332222221 1245667777777666
No 164
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.17 E-value=0.14 Score=53.34 Aligned_cols=224 Identities=16% Similarity=0.120 Sum_probs=148.0
Q ss_pred cHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC-ccc---ccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhh---CHH
Q 009632 242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP-EPT---RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL---NPE 314 (530)
Q Consensus 242 ~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~-~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~---~~~ 314 (530)
=+|++.+.+-+ ...|.-++..|+.+... |+ ... .-.+.|+.+++|..+-.+.|-..+-....+...- ..+
T Consensus 473 QLPiVLQVLLS--QvHRlRAL~LL~RFLDl-GpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~d 549 (1387)
T KOG1517|consen 473 QLPIVLQVLLS--QVHRLRALVLLARFLDL-GPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQAD 549 (1387)
T ss_pred hcchHHHHHHH--HHHHHHHHHHHHHHhcc-chhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHH
Confidence 34444443332 33455566666665542 21 111 1258999999999999999887776666665432 122
Q ss_pred HHHhhhhHhHhHhccC---CcHHHHHHHHHHHHhhccccC--H-HHHHHhHHHHHHHhhcCC-ChHHHHHHHHhhHHhhh
Q 009632 315 LAIQHILPCVKELSSD---SSQHVRSALASVIMGMAPLLG--K-DATIEQLLPIFLSLLKDE-FPDVRLNIISKLDQVNQ 387 (530)
Q Consensus 315 ~~~~~l~~~l~~~~~d---~~~~vr~~~~~~l~~l~~~~~--~-~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~ 387 (530)
.+.+..-.++.+.+.+ -++.-|..++..+..+...+. . ..+...++.+++..|+|+ .+-.|+=++-+|+.+-+
T Consensus 550 LvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~ 629 (1387)
T KOG1517|consen 550 LVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWE 629 (1387)
T ss_pred HHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhh
Confidence 2333333344444443 235788888888888877653 3 345667888999999995 68899999999999988
Q ss_pred hhchhHH---HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhh------------------HHHHHHH----HHH
Q 009632 388 VIGIDLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF------------------FDDKLGA----LCM 442 (530)
Q Consensus 388 ~~~~~~~---~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~------------------~~~~~~~----~l~ 442 (530)
.+....+ .......|..+++|+-.+||.+|+.+++.+......++ ..+++++ .+.
T Consensus 630 d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll 709 (1387)
T KOG1517|consen 630 DYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLL 709 (1387)
T ss_pred hcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHH
Confidence 7654433 23445567777899999999999999999987531100 0123333 466
Q ss_pred HHhcCCcHHHHHHHHHHHHHHHHHhC
Q 009632 443 QWLQDKVYSIRDAAANNLKRLAEEFG 468 (530)
Q Consensus 443 ~~l~d~~~~Vr~~a~~~l~~l~~~~~ 468 (530)
..++|..+-||.+.+..+..++..+.
T Consensus 710 ~~vsdgsplvr~ev~v~ls~~~~g~~ 735 (1387)
T KOG1517|consen 710 ALVSDGSPLVRTEVVVALSHFVVGYV 735 (1387)
T ss_pred HHHhccchHHHHHHHHHHHHHHHhhH
Confidence 77889999999999999988876543
No 165
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=97.16 E-value=0.34 Score=48.79 Aligned_cols=486 Identities=13% Similarity=0.128 Sum_probs=229.4
Q ss_pred cHHHHHHHhc--ChhHHHHHHHhhcHHHHHHhhChHhhhhccccccccccCCchHHHHHHHHHHhcccccCCCc------
Q 009632 10 PIAVLIDELK--NDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGV------ 81 (530)
Q Consensus 10 ~~~~l~~~l~--~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~~~~~l~~~~~~~~~~------ 81 (530)
++...+.... +.|+..|+.|+..+.++-. ....++-....+.+-. .++.+|-..-+.|...++.--++
T Consensus 4 diEqav~a~ndp~vdsa~KqqA~~y~~qiKs---Sp~aw~Icie~l~~~t-s~d~vkf~clqtL~e~vrekyne~nl~el 79 (980)
T KOG2021|consen 4 DIEQAVNAVNDPRVDSATKQQAIEYLNQIKS---SPNAWEICIELLINET-SNDLVKFYCLQTLIELVREKYNEANLNEL 79 (980)
T ss_pred HHHHHHHhhCCCcccHHHHHHHHHHHHhhcC---CccHHHHHHHHHHhhc-ccchhhhhhHHHHHHHHHHhhccCCHHHH
Confidence 3455555555 3588999999999988733 2334444455554422 45555554444444333311110
Q ss_pred -cchhcchhHHHhh-hccc----chHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccc-hhHH--HHhHh-hh
Q 009632 82 -EHAHVLLPPLETL-CTVE----ETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFT-ARVS--ACGLF-HI 151 (530)
Q Consensus 82 -~~~~~l~~~l~~l-~~d~----~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~-~r~~--~~~~l-~~ 151 (530)
-....+...+... +.++ .+-++.++...+..+.-..-+.....+...++..+..+.... +-.. .+..+ .+
T Consensus 80 qlvR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~~WnsfF~dlmsv~~~~s~~~~~dfflkvllaIdsE 159 (980)
T KOG2021|consen 80 QLVRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPDCWNSFFDDLMSVFQVDSAISGLDFFLKVLLAIDSE 159 (980)
T ss_pred HHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHhhhH
Confidence 0123344444332 2233 567888888888877665444333333444444443333211 1110 01111 01
Q ss_pred hcC----CCCh----------HHHHH----HHHHHHhh----cCCCChhHHHHHHHHHHHHHhhhcchh-hHHHHHHHHH
Q 009632 152 AYP----SAPD----------ILKTE----LRSIYTQL----CQDDMPMVRRSAASNLGKFAATVEPAH-LKTDIMSIFE 208 (530)
Q Consensus 152 l~~----~~~~----------~~~~~----l~~~l~~l----~~d~~~~vR~~a~~~l~~l~~~~~~~~-~~~~l~~~l~ 208 (530)
++. +-++ ..+++ +....-++ -+..+|.+--.++++++.+...+.-.. .-+..++.+.
T Consensus 160 iad~dv~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSWIdInLIaNd~f~nLLy 239 (980)
T KOG2021|consen 160 IADQDVIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSWIDINLIANDYFLNLLY 239 (980)
T ss_pred hhhccccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhhhhhhhhhchhHHHHHH
Confidence 111 1111 11222 22222222 122378888888999998887665422 2345667777
Q ss_pred HhhcCCchhHHHHHHHHHHHHhhh-cCchhhhhccHHHHHHh-------cCC--CCHHHHHHHHHHHHHHHHHhCCcccc
Q 009632 209 DLTQDDQDSVRLLAVEGCAALGKL-LEPQDCVAHILPVIVNF-------SQD--KSWRVRYMVANQLYELCEAVGPEPTR 278 (530)
Q Consensus 209 ~~~~d~~~~vr~~a~~~l~~l~~~-~~~~~~~~~~~~~l~~~-------~~d--~~~~vr~~~~~~l~~l~~~~~~~~~~ 278 (530)
+++. -+++|.+|..++-.+... ..|.+..+ ++..++.. ..| .+..+- ..+..+..++|-+..
T Consensus 240 ~fl~--ieelR~aac~cilaiVsKkMkP~dKL~-lln~L~q~l~lfg~~s~dq~~d~df~----e~vskLitg~gvel~- 311 (980)
T KOG2021|consen 240 KFLN--IEELRIAACNCILAIVSKKMKPMDKLA-LLNMLNQTLELFGYHSADQMDDLDFW----ESVSKLITGFGVELT- 311 (980)
T ss_pred HHHh--HHHHHHHHHHHHHHHHhcCCChhHHHH-HHHHHHHHHHHHhhhccccccCchHH----HHHHHHHhhcceeee-
Confidence 7776 467999999998887654 33322111 22323111 112 222222 233444444443321
Q ss_pred cchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhcccc------C-
Q 009632 279 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL------G- 351 (530)
Q Consensus 279 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~------~- 351 (530)
-...++-+..++.++..+...+-. ++|++.+.+.+....+-..+...+..+...+ .
T Consensus 312 ----~i~s~lnseld~~~kqn~l~~ll~-------------~vpyllq~l~~e~ddit~~ifpFlsdyl~~LKkl~~ls~ 374 (980)
T KOG2021|consen 312 ----IIISQLNSELDTLYKQNVLSILLE-------------IVPYLLQFLNNEFDDITAKIFPFLSDYLAFLKKLKALSS 374 (980)
T ss_pred ----hhHhhhhhccCHHHHHHHHHHHHH-------------HHHHHHHHhcccchhhHHHHHHHHHHHHHHHhhcccccc
Confidence 112222233333444433332221 2334444333333222222222222111100 0
Q ss_pred H-HHHHHhHHH-HHHHhh------cCCC----------hHHHHHHHHhhHHhhhhhchhHHHhhHHHHHH---HHhcCCC
Q 009632 352 K-DATIEQLLP-IFLSLL------KDEF----------PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV---ELAEDRH 410 (530)
Q Consensus 352 ~-~~~~~~l~~-~l~~~l------~d~~----------~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~---~~~~~~~ 410 (530)
+ ......++. .+.+.- +|++ .++|...-..+ ..+..+.++.+...+-..+. ...+..+
T Consensus 375 ~qk~~l~~illai~kqicydemy~nddn~tg~EeEa~f~e~RkkLk~fq-dti~~idpsl~l~~Ir~slS~al~ns~e~s 453 (980)
T KOG2021|consen 375 PQKVPLHKILLAIFKQICYDEMYFNDDNVTGDEEEAFFEEVRKKLKNFQ-DTIVVIDPSLFLNNIRQSLSAALMNSKEES 453 (980)
T ss_pred hhhccHHHHHHHHHHHHhccHHhhcccCCCCchHHHHHHHHHHHHHHHH-HHHHhcCHHHHHHHHHHHHHHHHhcCCcch
Confidence 0 001111111 111111 1111 24555543333 33333444443333333332 3345668
Q ss_pred hHHHHHHHHHHHHHHhhhChhhH------------HHHHHHHHHH--HhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhh
Q 009632 411 WRVRLAIIEYIPLLASQLGVGFF------------DDKLGALCMQ--WLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHI 476 (530)
Q Consensus 411 ~~~R~~~~~~l~~l~~~~~~~~~------------~~~~~~~l~~--~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i 476 (530)
|..-+.|+..+-.+++.+....+ ...+++.++. ....+++.|...-.+.+-.....+..+ ..-
T Consensus 454 wqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~e---sq~ 530 (980)
T KOG2021|consen 454 WQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYNKFFSTE---SQK 530 (980)
T ss_pred HHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHHHHHhcc---hhh
Confidence 99999999999999887643321 1233444333 244567777777777665544444322 335
Q ss_pred HHHHHhhc------cCCChHHHHHHHHHHHHHhhhcChH--HHHhhHHHHHHhhccCCCC
Q 009632 477 TPQVLEMI------NNPHYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRYL 528 (530)
Q Consensus 477 ~~~l~~~~------~d~~~~vr~~a~~~l~~i~~~~~~~--~~~~~~~p~l~~~l~D~~~ 528 (530)
+|.+...+ .+.+..||..+.+.+.++.+.+.+. .+.+.++.-+..+++-++|
T Consensus 531 ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL~~~vt 590 (980)
T KOG2021|consen 531 IPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLLHIKVT 590 (980)
T ss_pred hHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCC
Confidence 77766653 3458899999999999999886543 2345555555555544443
No 166
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.16 E-value=0.088 Score=59.71 Aligned_cols=268 Identities=14% Similarity=0.086 Sum_probs=155.2
Q ss_pred hhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcCh-hh------hhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCC
Q 009632 84 AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE-SD------LVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSA 156 (530)
Q Consensus 84 ~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~-~~------~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~ 156 (530)
|..+.+.+.....+++..++..|+.+|.+++..+-+ +. ...++-|+..-+.+..+..+|....+++..+....
T Consensus 1135 W~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~ 1214 (1780)
T PLN03076 1135 WHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSR 1214 (1780)
T ss_pred HHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence 344555566654566788999999999998775543 22 23445555555555667889999988888766543
Q ss_pred ChH---HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc------hhhHHHHHHHHHHhhcCC-chhHHHHHHHHH
Q 009632 157 PDI---LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP------AHLKTDIMSIFEDLTQDD-QDSVRLLAVEGC 226 (530)
Q Consensus 157 ~~~---~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~------~~~~~~l~~~l~~~~~d~-~~~vr~~a~~~l 226 (530)
+.. -|+.++..+.....++++.+=..+.+.+..+....-. .....+++.-+.++.... +.++-..|+..+
T Consensus 1215 ~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL 1294 (1780)
T PLN03076 1215 VNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFL 1294 (1780)
T ss_pred HhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHH
Confidence 333 4677888888777788888778888888776643211 122344555565655433 234545555555
Q ss_pred HHHhhhcC-----------------------------------ch---hhhhccHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 009632 227 AALGKLLE-----------------------------------PQ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYEL 268 (530)
Q Consensus 227 ~~l~~~~~-----------------------------------~~---~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l 268 (530)
..++..+- .+ .+|=.++-.+..++.|....||..+.+.|-.+
T Consensus 1295 ~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~i 1374 (1780)
T PLN03076 1295 RFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDT 1374 (1780)
T ss_pred HHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 54422220 00 11222334444557788999999999999888
Q ss_pred HHHhCCccc--------ccchHHHHHHhcC-----------------C-C----cHHHHHHHHHHHHHHHHhhCH-----
Q 009632 269 CEAVGPEPT--------RMDLVPAYVRLLR-----------------D-N----EAEVRIAAAGKVTKFCRILNP----- 313 (530)
Q Consensus 269 ~~~~~~~~~--------~~~l~~~l~~~l~-----------------d-~----~~~vr~~a~~~l~~~~~~~~~----- 313 (530)
....|.... ...+.|++..+-. + + .......+..++..++..+..
T Consensus 1375 L~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L 1454 (1780)
T PLN03076 1375 LRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTV 1454 (1780)
T ss_pred HHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887776543 2235555433210 0 0 011233444444444433321
Q ss_pred HHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccC
Q 009632 314 ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG 351 (530)
Q Consensus 314 ~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~ 351 (530)
..+++.++..+..++..++..+-.....++..+....|
T Consensus 1455 ~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng 1492 (1780)
T PLN03076 1455 NPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAG 1492 (1780)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhh
Confidence 12345555555566666777666666666666654443
No 167
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=97.12 E-value=0.29 Score=47.20 Aligned_cols=68 Identities=15% Similarity=0.137 Sum_probs=50.4
Q ss_pred HHHHHHHHhc-CCcHHHHHHHHHHHHHHHHHhC--hhHH-hhhhHHHHHhhccCCChHHHHHHHHHHHHHhh
Q 009632 437 LGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFG--PEWA-MQHITPQVLEMINNPHYLYRMTILRAISLLAP 504 (530)
Q Consensus 437 ~~~~l~~~l~-d~~~~Vr~~a~~~l~~l~~~~~--~~~~-~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~ 504 (530)
++..+.+++. ..++.+-.-||.=+|.+++.++ .... .-.....++++++++|.+||-.|+.++..++.
T Consensus 354 llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 354 LLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred HHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 5566667763 3456677888999999999873 2221 12356678889999999999999999998753
No 168
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=97.11 E-value=0.0065 Score=44.40 Aligned_cols=82 Identities=23% Similarity=0.281 Sum_probs=64.8
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHHHhhhc-chhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccH
Q 009632 165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVE-PAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHIL 243 (530)
Q Consensus 165 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~-~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 243 (530)
+...+..++|+.+.||..++..|..++..-. .....+.++..+.+.+.|+++-|-.+|++++..++...+.. ++
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~-----vl 79 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE-----VL 79 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH-----HH
Confidence 3445566789999999999999999998766 55556788999999999999999999999999999877643 55
Q ss_pred HHHHHhcC
Q 009632 244 PVIVNFSQ 251 (530)
Q Consensus 244 ~~l~~~~~ 251 (530)
|.+.+...
T Consensus 80 ~~L~~~y~ 87 (92)
T PF10363_consen 80 PILLDEYA 87 (92)
T ss_pred HHHHHHHh
Confidence 55554433
No 169
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=97.10 E-value=0.36 Score=48.11 Aligned_cols=129 Identities=16% Similarity=0.110 Sum_probs=87.1
Q ss_pred HhhHHHHHHHHhcC----CChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHHhCh
Q 009632 395 SQSLLPAIVELAED----RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGP 469 (530)
Q Consensus 395 ~~~l~~~l~~~~~~----~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~-d~~~~Vr~~a~~~l~~l~~~~~~ 469 (530)
...+.|.+.+.+++ ++.....+|--++..+. +++.+++.+ =+|.+...+. .|.|.+|..|.-.+|.+.-.+..
T Consensus 890 Ls~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klM-ClS~~fc~e-hlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~ 967 (1128)
T COG5098 890 LSNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLM-CLSFEFCSE-HLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNT 967 (1128)
T ss_pred HhhhhHHHHHHhccccccCCHHHHHHHHHHHHHHH-HHhHHHHHH-HHHHHHHHHhhCCCcceeccceeeccccceehhh
Confidence 34556667777766 46677777777776653 345555544 4677777665 88999999999999998766542
Q ss_pred hHHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcChHHHHhhHHHHHHhhccCCCCC
Q 009632 470 EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRYLN 529 (530)
Q Consensus 470 ~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~p~l~~~l~D~~~~ 529 (530)
..++.-..+.+.+.|.+..||.+++..+..++-+ |.-.+ .--+|.+..+++|+...
T Consensus 968 --~~de~t~yLyrrL~De~~~V~rtclmti~fLila-gq~KV-KGqlg~ma~~L~deda~ 1023 (1128)
T COG5098 968 --TADEHTHYLYRRLGDEDADVRRTCLMTIHFLILA-GQLKV-KGQLGKMALLLTDEDAE 1023 (1128)
T ss_pred --hhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHc-cceee-ccchhhhHhhccCCcch
Confidence 2355677788889999999999999988876542 11111 11256677777776543
No 170
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=97.07 E-value=0.13 Score=49.02 Aligned_cols=140 Identities=17% Similarity=0.240 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhcc------CCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhh
Q 009632 294 AEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS------DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL 367 (530)
Q Consensus 294 ~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~------d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l 367 (530)
..-|.+|...+..+++..+... .+.+...+..+++ ..+|+-+.+++..++.++........
T Consensus 225 ~TrR~AA~dfl~~L~~~~~~~v-~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~------------ 291 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFEKQV-TSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKS------------ 291 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTT------------
T ss_pred CCcHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccC------------
Confidence 4568888888888888765442 1333333333332 46899999999999888754321000
Q ss_pred cCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcC
Q 009632 368 KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQD 447 (530)
Q Consensus 368 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d 447 (530)
+...+ ..+-++. +.+...++|-|. --.+..+-.|..|+..+..+...++++.. ..++|.+.+++.+
T Consensus 292 --Gvt~~-----~~~v~v~-----~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l-~~~~~~l~~~L~~ 357 (370)
T PF08506_consen 292 --GVTQT-----NELVDVV-----DFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQL-LQIFPLLVNHLQS 357 (370)
T ss_dssp --B-S-B------TTS-HH-----HHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHH-HHHHHHHHHHTTS
T ss_pred --Ccccc-----cccccHH-----HHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHH-HHHHHHHHHHhCC
Confidence 00000 0000111 122345556555 23344566777777777777777766544 3477778888887
Q ss_pred CcHHHHHHHHHHH
Q 009632 448 KVYSIRDAAANNL 460 (530)
Q Consensus 448 ~~~~Vr~~a~~~l 460 (530)
++..|+..|+.++
T Consensus 358 ~~~vv~tyAA~~i 370 (370)
T PF08506_consen 358 SSYVVHTYAAIAI 370 (370)
T ss_dssp S-HHHHHHHHHHH
T ss_pred CCcchhhhhhhhC
Confidence 7777887777664
No 171
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=97.03 E-value=0.011 Score=43.20 Aligned_cols=84 Identities=18% Similarity=0.112 Sum_probs=64.1
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHhhhC-hhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHH
Q 009632 400 PAIVELAEDRHWRVRLAIIEYIPLLASQLG-VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITP 478 (530)
Q Consensus 400 ~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~-~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~ 478 (530)
......+.|+...+|..++..+..+...-. .....+.++..++..+.|+++-|=.+|++++..++..++ ..++|
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p-----~~vl~ 80 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP-----DEVLP 80 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh-----HHHHH
Confidence 344455678888899999999888887666 444456788888889999999999999999998887764 44777
Q ss_pred HHHhhccCCC
Q 009632 479 QVLEMINNPH 488 (530)
Q Consensus 479 ~l~~~~~d~~ 488 (530)
.+.+.+.|++
T Consensus 81 ~L~~~y~~~~ 90 (92)
T PF10363_consen 81 ILLDEYADPS 90 (92)
T ss_pred HHHHHHhCcc
Confidence 7777666553
No 172
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=96.94 E-value=0.054 Score=55.68 Aligned_cols=134 Identities=15% Similarity=0.069 Sum_probs=84.3
Q ss_pred HHHHHHHhhcC----CChHHHHHHHHhhHHhhhhhchh------HHHhhHHHHHHHH----hcCCChHHHHHHHHHHHHH
Q 009632 359 LLPIFLSLLKD----EFPDVRLNIISKLDQVNQVIGID------LLSQSLLPAIVEL----AEDRHWRVRLAIIEYIPLL 424 (530)
Q Consensus 359 l~~~l~~~l~d----~~~~vr~~a~~~l~~l~~~~~~~------~~~~~l~~~l~~~----~~~~~~~~R~~~~~~l~~l 424 (530)
++..+..++++ +.+.+|..++-+++.+......+ .+.+.+.+.+.+. .++.+...+..++.+||++
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~ 473 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA 473 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence 34445555554 35679999999999988754321 1223455555443 3445667788899999987
Q ss_pred HhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhccC--CChHHHHHHHHHHHHH
Q 009632 425 ASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN--PHYLYRMTILRAISLL 502 (530)
Q Consensus 425 ~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d--~~~~vr~~a~~~l~~i 502 (530)
.. ......+.|++. .-.+....+|..|+.+|..+..... ..+.+.+.+.+.| .+.++|.+|+..+-..
T Consensus 474 g~----~~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p-----~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t 543 (574)
T smart00638 474 GH----PSSIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDP-----RKVQEVLLPIYLNRAEPPEVRMAAVLVLMET 543 (574)
T ss_pred CC----hhHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCc-----hHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Confidence 53 222233444443 2223456899999999998876543 3355555665554 4778999998887755
No 173
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=96.94 E-value=0.019 Score=60.45 Aligned_cols=147 Identities=18% Similarity=0.084 Sum_probs=108.1
Q ss_pred chhHHHhhhcccchHHHHHHHHHHHHHHhhcChhh----hhhhHHHHHHHHh--------cCC-ccchhHHHHhHhhhhc
Q 009632 87 LLPPLETLCTVEETCVRDKAVESLCRIGSQMRESD----LVDWYIPLVKRLA--------AGE-WFTARVSACGLFHIAY 153 (530)
Q Consensus 87 l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~l~--------~~~-~~~~r~~~~~~l~~l~ 153 (530)
++..|....-++.+.+|+.+..++..+.+.-.+.. ++..+..++.-+. .+. ...+|..+++.++.+.
T Consensus 78 ~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~l 157 (1549)
T KOG0392|consen 78 FLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAYL 157 (1549)
T ss_pred HHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHH
Confidence 44444445557899999999999999988655422 2222222222111 222 2468999999999999
Q ss_pred CCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc--hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhh
Q 009632 154 PSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGK 231 (530)
Q Consensus 154 ~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~ 231 (530)
+...+......++++.+++.-+.|++|..-+..+......... ......+++...+.+.|.++.||..|+..+..+..
T Consensus 158 ~~~~~s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds~ddv~~~aa~~l~~~~s 237 (1549)
T KOG0392|consen 158 KHMDESLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDSDDDVRSVAAQFLVPAPS 237 (1549)
T ss_pred HhhhhHhhHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHhhhhhH
Confidence 9999888899999999999989999999998888877662222 23455678888899999999999999998887766
Q ss_pred hc
Q 009632 232 LL 233 (530)
Q Consensus 232 ~~ 233 (530)
..
T Consensus 238 ~~ 239 (1549)
T KOG0392|consen 238 IQ 239 (1549)
T ss_pred HH
Confidence 55
No 174
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=96.84 E-value=0.053 Score=57.34 Aligned_cols=225 Identities=19% Similarity=0.138 Sum_probs=130.9
Q ss_pred cHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHH------------hcCCC-cHHHHHHHHHHHHHHH
Q 009632 242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVR------------LLRDN-EAEVRIAAAGKVTKFC 308 (530)
Q Consensus 242 ~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~------------~l~d~-~~~vr~~a~~~l~~~~ 308 (530)
++..+...+-++.|.+|..++-++..+.+..++......+=..+.. ...|+ ...||++++++|+.+.
T Consensus 78 ~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~l 157 (1549)
T KOG0392|consen 78 FLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAYL 157 (1549)
T ss_pred HHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHH
Confidence 3344444455677888888777777777766654432221111111 11222 2469999999999999
Q ss_pred HhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccC--HHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhh
Q 009632 309 RILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG--KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN 386 (530)
Q Consensus 309 ~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 386 (530)
+......+ ...+..+.+++..++|++|.+-+..+........ -..+...+++.+...|.|.+..||..|++.+..+.
T Consensus 158 ~~~~~s~~-~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds~ddv~~~aa~~l~~~~ 236 (1549)
T KOG0392|consen 158 KHMDESLI-KETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDSDDDVRSVAAQFLVPAP 236 (1549)
T ss_pred HhhhhHhh-HHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHhhhhh
Confidence 88776644 4556777777777899999877666655433111 12345677888889999999999999999887776
Q ss_pred hhhchh------HHHhhHHHHHHHHh--cCCChHHHHHHHHHHHHH--HhhhChhhHHHHHHHHHHHHhcCCcHHHHHHH
Q 009632 387 QVIGID------LLSQSLLPAIVELA--EDRHWRVRLAIIEYIPLL--ASQLGVGFFDDKLGALCMQWLQDKVYSIRDAA 456 (530)
Q Consensus 387 ~~~~~~------~~~~~l~~~l~~~~--~~~~~~~R~~~~~~l~~l--~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a 456 (530)
...... .+...+...+.++. ..+....|......+... ............+.|-+...+......||.++
T Consensus 237 s~~v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~~i~sv~~a~ 316 (1549)
T KOG0392|consen 237 SIQVKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLRHTISSVRRAA 316 (1549)
T ss_pred HHHHhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHH
Confidence 654111 11112222222221 111122332222222111 11111111122455666666677778899999
Q ss_pred HHHHHHHHHHh
Q 009632 457 ANNLKRLAEEF 467 (530)
Q Consensus 457 ~~~l~~l~~~~ 467 (530)
+..+..+.+.-
T Consensus 317 l~~l~~lle~~ 327 (1549)
T KOG0392|consen 317 LETLAMLLEAD 327 (1549)
T ss_pred HHHHHHHHhcC
Confidence 99998887764
No 175
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=96.84 E-value=0.6 Score=46.42 Aligned_cols=260 Identities=11% Similarity=0.070 Sum_probs=117.0
Q ss_pred hhccHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHh--CCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHH
Q 009632 239 VAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAV--GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL 315 (530)
Q Consensus 239 ~~~~~~~l~~~~~d~-~~~vr~~~~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~ 315 (530)
...++..+..++... +...-..+...|..+..+- +.+. ...++..+-....- .+....+.+++..+++.-....
T Consensus 174 i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~s-l~~~i~vLCsi~~~--~~l~~~~w~~m~nL~~S~~g~~ 250 (464)
T PF11864_consen 174 ISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSES-LSPCIEVLCSIVNS--VSLCKPSWRTMRNLLKSHLGHS 250 (464)
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHH-HHHHHHHHhhHhcc--cccchhHHHHHHHHHcCccHHH
Confidence 444555555555432 2333345556666555421 1111 12222222222111 2556666777777765332222
Q ss_pred HHhhhhHhH--hHhccCCcHHHHHHHHHHHHhhccccCHHH------HHHhHHHHHHHhhcCCChHHHHHHHHhhHHhh-
Q 009632 316 AIQHILPCV--KELSSDSSQHVRSALASVIMGMAPLLGKDA------TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN- 386 (530)
Q Consensus 316 ~~~~l~~~l--~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~------~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~- 386 (530)
....+...+ ..-...++.++-.+++..+..+.-..|.+. ....++|.+...++-++..|-..++..+..+.
T Consensus 251 ~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~ 330 (464)
T PF11864_consen 251 AIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLLD 330 (464)
T ss_pred HHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHh
Confidence 223333333 111123456677788888887654442221 12348899999998776666556655555555
Q ss_pred hhhchh----HHH--hhHHHHHHHHhcC-CC--------hHHHHHHHHHHHHHHhhhChhh---HHHHHHHHHHHHhcCC
Q 009632 387 QVIGID----LLS--QSLLPAIVELAED-RH--------WRVRLAIIEYIPLLASQLGVGF---FDDKLGALCMQWLQDK 448 (530)
Q Consensus 387 ~~~~~~----~~~--~~l~~~l~~~~~~-~~--------~~~R~~~~~~l~~l~~~~~~~~---~~~~~~~~l~~~l~d~ 448 (530)
+.++.. .+. -.+++.+...... +. ..++......+..+-+.+.... -.+.++..+.+....-
T Consensus 331 ~~~~~~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ie~L~~~~~~~g~~~~~~~f~~~~~~~l 410 (464)
T PF11864_consen 331 GKYGRELSEEDWDIILDIIEEIFDKIQPFDSWYSNSSSLDQLSSNLHSLLSSIESLYEQHDFNGPKDKLFNFFERVHSYL 410 (464)
T ss_pred HhhhhhhcccCchHHHHHHHHHHhhccccccccccccchHHHHHHHHHHHHHHHHHHhCCCcCccHHHHHHHHHHHhccC
Confidence 444332 111 1122222222211 11 1233333333333333222211 1345666666655443
Q ss_pred cHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhc-cCCChHHHHHHHHHHHHH
Q 009632 449 VYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI-NNPHYLYRMTILRAISLL 502 (530)
Q Consensus 449 ~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~-~d~~~~vr~~a~~~l~~i 502 (530)
.+......+..-...+.-..+.|. +.....+..++ ++.+..+|..|++.+..+
T Consensus 411 p~s~~~~vl~~~~~~~~Ps~~~W~-~n~~~ll~~F~~~~~~~~vRi~aL~~l~e~ 464 (464)
T PF11864_consen 411 PDSSALLVLFYEERSCSPSNPDWL-DNLQKLLDRFYNRDRRSEVRIKALDVLEEI 464 (464)
T ss_pred CHHHHHHHHHHHhcccCCCChHHH-HHHHHHHHHHhCCCCCchHHHHHHHHHhhC
Confidence 333222222110111111133343 22333333344 567889999999887653
No 176
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=96.72 E-value=0.056 Score=44.60 Aligned_cols=71 Identities=14% Similarity=0.200 Sum_probs=45.3
Q ss_pred hhHHHHHHHHhcCCC-hHHHHHHHHHHHHHHhhhChhh--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Q 009632 396 QSLLPAIVELAEDRH-WRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE 466 (530)
Q Consensus 396 ~~l~~~l~~~~~~~~-~~~R~~~~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 466 (530)
.-.+..+...++|++ ...+..+++++..+.+..|.+. +.++++|.+++.+.......|+....-|+.+...
T Consensus 85 ~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~i 158 (160)
T PF11865_consen 85 TVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVSI 158 (160)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 445556666667664 3444567777777766666544 4466777777777766667777777777666543
No 177
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=96.64 E-value=0.45 Score=42.26 Aligned_cols=192 Identities=16% Similarity=0.177 Sum_probs=109.7
Q ss_pred hcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHH--
Q 009632 171 LCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVN-- 248 (530)
Q Consensus 171 l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~-- 248 (530)
+.+.+++++....++.|+.++..-. ...+.++..+..+...+....+..+...+..+...-+. ..+.+-+.+..
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~--~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r--~f~~L~~~L~~~~ 84 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKN--VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDR--HFPFLQPLLLLLI 84 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCc--cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCch--HHHHHHHHHHHHH
Confidence 5566777777777777777776431 33344555566666666555555555555555543221 11223333322
Q ss_pred -------hcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhc-CCCcHHHHHHHHHHHHHHHHhhCHH--HHHh
Q 009632 249 -------FSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLL-RDNEAEVRIAAAGKVTKFCRILNPE--LAIQ 318 (530)
Q Consensus 249 -------~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~ 318 (530)
.-.+..|....+.+.++..++...+. .-..+++.+...+ ++.++.++..+++++..+++.--.+ ....
T Consensus 85 ~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~--~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w~ 162 (234)
T PF12530_consen 85 LRIPSSFSSKDEFWECLISIAASIRDICCSRPD--HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAWK 162 (234)
T ss_pred hhcccccCCCcchHHHHHHHHHHHHHHHHhChh--hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 11245677777878888888887665 2356888888889 7888889999999999998532211 1112
Q ss_pred hhhHhHhHhccCCcHHHHHHHHHHHHhhccccC----HHHHHHhHHHHHHHhhcCCC
Q 009632 319 HILPCVKELSSDSSQHVRSALASVIMGMAPLLG----KDATIEQLLPIFLSLLKDEF 371 (530)
Q Consensus 319 ~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~----~~~~~~~l~~~l~~~l~d~~ 371 (530)
.+.+ ++..+..+.+-...++.+..+...-- .+.+...++..+.+.....+
T Consensus 163 vl~~---~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~ 216 (234)
T PF12530_consen 163 VLQK---KLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSD 216 (234)
T ss_pred HHHH---hcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccc
Confidence 2222 23345555555555555544433221 12334455555555555444
No 178
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=96.58 E-value=0.92 Score=45.10 Aligned_cols=275 Identities=11% Similarity=0.019 Sum_probs=151.2
Q ss_pred HHHHHHHhhcHHHHHHhhChHhhhhccccccccccC--CchHHHHHHHHHHhcccccCCC--ccchhcchhHHHhhhccc
Q 009632 23 IQLRLNSIRRLSTIARALGEERTRKELIPFLSENND--DDDEVLLAMAEELGVFIPYVGG--VEHAHVLLPPLETLCTVE 98 (530)
Q Consensus 23 ~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d--~~~~vr~~~~~~l~~~~~~~~~--~~~~~~l~~~l~~l~~d~ 98 (530)
-..|..|++.+......+..+.+ .++.-...++.+ ...++|.++.+.|...++.-.. ......++..+..-..++
T Consensus 4 l~~R~~a~~~l~~~i~~~~~~~i-~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~~ 82 (464)
T PF11864_consen 4 LSERIKAAEELCESIQKYPLSSI-EEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSNDD 82 (464)
T ss_pred HHHHHHHHHHHHHHHHhCCchHH-HHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCCch
Confidence 46788888888776665543222 223333333222 3457899999988877663221 112333444444444555
Q ss_pred chHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCC---------------------------ccchhHHHHhHhhh
Q 009632 99 ETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGE---------------------------WFTARVSACGLFHI 151 (530)
Q Consensus 99 ~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~---------------------------~~~~r~~~~~~l~~ 151 (530)
+-..|-.|+.+|..=++.+.. +...+.|.+...+..- +...-.....++..
T Consensus 83 d~~~~l~aL~~LT~~Grdi~~--~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~n 160 (464)
T PF11864_consen 83 DFDLRLEALIALTDNGRDIDF--FEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVN 160 (464)
T ss_pred hHHHHHHHHHHHHcCCcCchh--cccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHH
Confidence 667777777777777766633 2223333333222100 00000112233333
Q ss_pred hcC----CCChHHHHHHHHHHHhhcCCCC-hhHHHHHHHHHHHHHhh--hcchhhHHHHHHHHHHhhcCCchhHHHHHHH
Q 009632 152 AYP----SAPDILKTELRSIYTQLCQDDM-PMVRRSAASNLGKFAAT--VEPAHLKTDIMSIFEDLTQDDQDSVRLLAVE 224 (530)
Q Consensus 152 l~~----~~~~~~~~~l~~~l~~l~~d~~-~~vR~~a~~~l~~l~~~--~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~ 224 (530)
+.+ .+.++....++..+..+|..++ ...=+.++..+..+..+ +|.+. ...++..+-...+-. .....+.+
T Consensus 161 viKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~s-l~~~i~vLCsi~~~~--~l~~~~w~ 237 (464)
T PF11864_consen 161 VIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSES-LSPCIEVLCSIVNSV--SLCKPSWR 237 (464)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHH-HHHHHHHHhhHhccc--ccchhHHH
Confidence 332 3455677778888888775543 33346778888888763 33332 334444444443322 55666777
Q ss_pred HHHHHhhh-cCchhhhhccHHHHHHhc--C----CCCHHHHHHHHHHHHHHHHHhCCccc----ccc--hHHHHHHhcCC
Q 009632 225 GCAALGKL-LEPQDCVAHILPVIVNFS--Q----DKSWRVRYMVANQLYELCEAVGPEPT----RMD--LVPAYVRLLRD 291 (530)
Q Consensus 225 ~l~~l~~~-~~~~~~~~~~~~~l~~~~--~----d~~~~vr~~~~~~l~~l~~~~~~~~~----~~~--l~~~l~~~l~d 291 (530)
++..+++. .| ...+..+...+ . ..+..+-+.+...++.+.-..+.+.. ... ++|.+...++.
T Consensus 238 ~m~nL~~S~~g-----~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~ 312 (464)
T PF11864_consen 238 TMRNLLKSHLG-----HSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKS 312 (464)
T ss_pred HHHHHHcCccH-----HHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhC
Confidence 77777743 22 22444445544 2 23456667788888877766643321 223 89999999987
Q ss_pred CcHHHHHHHHHHHHHHH
Q 009632 292 NEAEVRIAAAGKVTKFC 308 (530)
Q Consensus 292 ~~~~vr~~a~~~l~~~~ 308 (530)
.++.|-...+..+..+.
T Consensus 313 ~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 313 NSPRVDYEILLLINRLL 329 (464)
T ss_pred CCCeehHHHHHHHHHHH
Confidence 77666666666666665
No 179
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=96.56 E-value=1 Score=45.50 Aligned_cols=455 Identities=17% Similarity=0.200 Sum_probs=232.0
Q ss_pred chHHHHHHHHHHhcccccCCCcc-chhcchhHHHhhhcccchHHHHHHHHHHHHHHh-hcChhhhhhhHHHH--HHHH--
Q 009632 60 DDEVLLAMAEELGVFIPYVGGVE-HAHVLLPPLETLCTVEETCVRDKAVESLCRIGS-QMRESDLVDWYIPL--VKRL-- 133 (530)
Q Consensus 60 ~~~vr~~~~~~l~~~~~~~~~~~-~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~-~~~~~~~~~~l~~~--l~~l-- 133 (530)
+|++....-.++|.++.-..-.- .-...+++|-.+++ -..+|.+|+.|+-.++. .+.|.+-...+-.+ ..++
T Consensus 206 npgl~~~cLdc~g~fVSWIdInLIaNd~f~nLLy~fl~--ieelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l~lfg 283 (980)
T KOG2021|consen 206 NPGLINSCLDCIGSFVSWIDINLIANDYFLNLLYKFLN--IEELRIAACNCILAIVSKKMKPMDKLALLNMLNQTLELFG 283 (980)
T ss_pred CchHHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHh--HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHh
Confidence 67777766677776655322101 11334555555554 57899999999988765 45553322221111 1111
Q ss_pred --hcC--CccchhHHHHhHhhhh-------c----CCCChHH-------HHHHHHHHHhhcCCCChhHHHHHHHHHHHHH
Q 009632 134 --AAG--EWFTARVSACGLFHIA-------Y----PSAPDIL-------KTELRSIYTQLCQDDMPMVRRSAASNLGKFA 191 (530)
Q Consensus 134 --~~~--~~~~~r~~~~~~l~~l-------~----~~~~~~~-------~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~ 191 (530)
..+ ++...-.....++... . ...+..+ .-.++|.+++.+.+....+-......+..+.
T Consensus 284 ~~s~dq~~d~df~e~vskLitg~gvel~~i~s~lnseld~~~kqn~l~~ll~~vpyllq~l~~e~ddit~~ifpFlsdyl 363 (980)
T KOG2021|consen 284 YHSADQMDDLDFWESVSKLITGFGVELTIIISQLNSELDTLYKQNVLSILLEIVPYLLQFLNNEFDDITAKIFPFLSDYL 363 (980)
T ss_pred hhccccccCchHHHHHHHHHhhcceeeehhHhhhhhccCHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHH
Confidence 122 2333333333333321 1 1222222 2346678888877776666666666666555
Q ss_pred hhhcch---------hhHHHHHHHHHHhhcCC------c----------hhHHHHHHHHHHHHhhhcCchhhhhccHHHH
Q 009632 192 ATVEPA---------HLKTDIMSIFEDLTQDD------Q----------DSVRLLAVEGCAALGKLLEPQDCVAHILPVI 246 (530)
Q Consensus 192 ~~~~~~---------~~~~~l~~~l~~~~~d~------~----------~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l 246 (530)
..+.+. .....+...+.++..|+ + .++|+.---....++ .+.++-+.+.+-..+
T Consensus 364 ~~LKkl~~ls~~qk~~l~~illai~kqicydemy~nddn~tg~EeEa~f~e~RkkLk~fqdti~-~idpsl~l~~Ir~sl 442 (980)
T KOG2021|consen 364 AFLKKLKALSSPQKVPLHKILLAIFKQICYDEMYFNDDNVTGDEEEAFFEEVRKKLKNFQDTIV-VIDPSLFLNNIRQSL 442 (980)
T ss_pred HHHhhcccccchhhccHHHHHHHHHHHHhccHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHH
Confidence 444331 12233444555554331 1 245654333333333 334444444454444
Q ss_pred HH---hcCCCCHHHHHHHHHHHHHHHHHhCCccc-------c-----cchHHHHH--HhcCCCcHHHHHHHHHHHHHHHH
Q 009632 247 VN---FSQDKSWRVRYMVANQLYELCEAVGPEPT-------R-----MDLVPAYV--RLLRDNEAEVRIAAAGKVTKFCR 309 (530)
Q Consensus 247 ~~---~~~d~~~~vr~~~~~~l~~l~~~~~~~~~-------~-----~~l~~~l~--~~l~d~~~~vr~~a~~~l~~~~~ 309 (530)
.. .++..+|..-+.+...+..+++.+..... . ..+.+.+. +.+..+++.|..--++.+.....
T Consensus 443 S~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~k 522 (980)
T KOG2021|consen 443 SAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYNK 522 (980)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHHH
Confidence 44 34567899889999999999887643321 1 12223222 34567788888888888877666
Q ss_pred hhCHH-HHHhhhhHhHh--HhccCCcHHHHHHHHHHHHhhccccCHH--HHHHhHHHHHHHhhcCCC------------h
Q 009632 310 ILNPE-LAIQHILPCVK--ELSSDSSQHVRSALASVIMGMAPLLGKD--ATIEQLLPIFLSLLKDEF------------P 372 (530)
Q Consensus 310 ~~~~~-~~~~~l~~~l~--~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~------------~ 372 (530)
.+..+ ...+.++.++. ..+.+++.+||..+.-.+.++.+.+.+. .+.+.++.-+..+|.... .
T Consensus 523 ff~~esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL~~~vtt~N~~s~~lt~f 602 (980)
T KOG2021|consen 523 FFSTESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLLHIKVTTINAQSDNLTIF 602 (980)
T ss_pred HHhcchhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCcCccccccccc
Confidence 55543 22233333332 1244677888887777777766554331 233444444444442111 1
Q ss_pred HHHHHHHHhhHHhhhh---------------hchhHHHhhHHHHHHHHhcCCChHHHH----HHHHHHHHHHhhhChhh-
Q 009632 373 DVRLNIISKLDQVNQV---------------IGIDLLSQSLLPAIVELAEDRHWRVRL----AIIEYIPLLASQLGVGF- 432 (530)
Q Consensus 373 ~vr~~a~~~l~~l~~~---------------~~~~~~~~~l~~~l~~~~~~~~~~~R~----~~~~~l~~l~~~~~~~~- 432 (530)
+-.....+++|.++.. +.+.-....+.+....+.+|....+.. .++.+++.+++.+...-
T Consensus 603 ddqlyIfEtiGviI~l~n~paE~qaay~~~litpl~~~~~igl~~a~lasde~~pv~Ia~c~~~lmaig~lakgf~~rlv 682 (980)
T KOG2021|consen 603 DDQLYIFETIGVIITLNNSPAELQAAYANTLITPLILDQIIGLLFAQLASDEASPVVIAECHHILMAIGTLAKGFHIRLV 682 (980)
T ss_pred cccceeeecceEEEeCCCCCHHHHHHHHhcccChHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHhhcccccCc
Confidence 1122222222222211 011111122333334445665554443 35556677776553211
Q ss_pred ----------H---HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHh-hccCCChHHHHHHHHH
Q 009632 433 ----------F---DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLE-MINNPHYLYRMTILRA 498 (530)
Q Consensus 433 ----------~---~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~-~~~d~~~~vr~~a~~~ 498 (530)
| .+.+++.+... -....+|.+.--.++.+...+|++.. ..+|.+.. +++|.+..--...+-.
T Consensus 683 t~~qvg~~~vf~~~ldvil~~ls~f--~k~E~iRsavrft~hRmI~~lg~~vl--Pfipklie~lL~s~d~kEmvdfl~f 758 (980)
T KOG2021|consen 683 TENQVGNMVVFSNILDVILVTLSFF--NKFENIRSAVRFTFHRMIPILGNKVL--PFIPKLIELLLSSTDLKEMVDFLGF 758 (980)
T ss_pred chhcccHHHHHHHHHHHHHHHHhhc--cccchhHHHHHHHHHHHHHhcchhhh--cchHHHHHHHHhcCCHHHHHHHHHH
Confidence 1 12233433332 24567888888899999999887643 24555444 4666665544455566
Q ss_pred HHHHhhhcC--hHHHHhhHHHHHHh
Q 009632 499 ISLLAPVMG--SEITCSRLLPVVIN 521 (530)
Q Consensus 499 l~~i~~~~~--~~~~~~~~~p~l~~ 521 (530)
+.++..... --++.++++|.+.-
T Consensus 759 lsQLihkfk~~~~~ilnqmlppll~ 783 (980)
T KOG2021|consen 759 LSQLIHKFKTDCYQILNQMLPPLLN 783 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666554433 23457777776553
No 180
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=96.54 E-value=1 Score=45.15 Aligned_cols=68 Identities=13% Similarity=0.173 Sum_probs=46.9
Q ss_pred hHHHhhHHHHHHHHhcCC----ChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Q 009632 392 DLLSQSLLPAIVELAEDR----HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLA 464 (530)
Q Consensus 392 ~~~~~~l~~~l~~~~~~~----~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~ 464 (530)
+++.+.++..+.++..|. ...+|..|+...+.+... +. ...-|.+...+-|+.+.+|.-+.++..+|.
T Consensus 686 e~fr~~iln~l~nY~~d~rGDVgs~iR~~a~klm~SfL~k---D~--~~~~~y~iR~~~dki~~lR~l~yqa~eqI~ 757 (993)
T COG5234 686 EEFRKEILNVLSNYLTDTRGDVGSWIRKPAMKLMSSFLVK---DS--SGKKLYIIRQTFDKIDSLRGLAYQALEQIR 757 (993)
T ss_pred HHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHhhc---cc--cCCchhHHHHhhcccHHHHhhhhhhhhhee
Confidence 456678888888877664 456888888777664321 11 112357788889999999988887766653
No 181
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=96.54 E-value=0.061 Score=45.05 Aligned_cols=127 Identities=15% Similarity=0.126 Sum_probs=66.7
Q ss_pred hHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHH-HHhHhhhhcCCCChHHHHHHHHH
Q 009632 89 PPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVS-ACGLFHIAYPSAPDILKTELRSI 167 (530)
Q Consensus 89 ~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~-~~~~l~~l~~~~~~~~~~~l~~~ 167 (530)
+++.-+..|+++.+|.+|+..+..+.....+ .+....+.+....-.. -...++ ....++...
T Consensus 43 sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~---------~L~~Ae~~~~~~~sFtslS~tLa--------~~i~~lH~~ 105 (182)
T PF13251_consen 43 SLLTCILKDPSPKVRAAAASALAALLEGSKP---------FLAQAEESKGPSGSFTSLSSTLA--------SMIMELHRG 105 (182)
T ss_pred chhHHHHcCCchhHHHHHHHHHHHHHHccHH---------HHHHHHhcCCCCCCcccHHHHHH--------HHHHHHHHH
Confidence 3455567899999999999999988776321 1111111110000000 000000 122334444
Q ss_pred HHhhcC-CCChhHHHHHHHHHHHHHh-----hhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhc
Q 009632 168 YTQLCQ-DDMPMVRRSAASNLGKFAA-----TVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLL 233 (530)
Q Consensus 168 l~~l~~-d~~~~vR~~a~~~l~~l~~-----~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~ 233 (530)
+...+. +.+..+-...++++..+.. +++ ..+...++..+..++.+.+.+||..++.+++.+...-
T Consensus 106 Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~-~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 106 LLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLP-PGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHccCChhhcC-HhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 443332 3355555666666666653 333 3445566666666666677777777777777666543
No 182
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.53 E-value=0.52 Score=50.01 Aligned_cols=128 Identities=14% Similarity=0.130 Sum_probs=91.8
Q ss_pred CCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccc---cCH-HHHHHhHHHHHHH
Q 009632 290 RDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL---LGK-DATIEQLLPIFLS 365 (530)
Q Consensus 290 ~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~---~~~-~~~~~~l~~~l~~ 365 (530)
+|-.|++|..+++.|+..+..++...+...++.++--.+.|.+..||..++.++..+... .+. +.|...+-.-++.
T Consensus 297 RDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVe 376 (1048)
T KOG2011|consen 297 RDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVE 376 (1048)
T ss_pred ccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 688899999999999999999988877788899999999999999999999999888765 221 3344455444555
Q ss_pred hh-cCCChHHHHHHHHhhHHh--hhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHH
Q 009632 366 LL-KDEFPDVRLNIISKLDQV--NQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP 422 (530)
Q Consensus 366 ~l-~d~~~~vr~~a~~~l~~l--~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~ 422 (530)
+. .|.+..||...+...-.. ...+. ..=+-.+..++-+.+.+++.++...+.
T Consensus 377 Madrd~~~~Vrav~L~~~~~~~~~g~L~-----d~di~~Vy~Li~d~~r~~~~aa~~fl~ 431 (1048)
T KOG2011|consen 377 MADRDRNVSVRAVGLVLCLLLSSSGLLS-----DKDILIVYSLIYDSNRRVAVAAGEFLY 431 (1048)
T ss_pred HHhhhcchhHHHHHHHHHHHHhcccccC-----hhHHHHHHHHHhccCcchHHHHHHHHH
Confidence 54 666777877765544333 12222 222233446667888888888877764
No 183
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=96.49 E-value=0.084 Score=44.22 Aligned_cols=19 Identities=26% Similarity=0.336 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHHhhhcc
Q 009632 178 MVRRSAASNLGKFAATVEP 196 (530)
Q Consensus 178 ~vR~~a~~~l~~l~~~~~~ 196 (530)
+||..|+.+|..+++..++
T Consensus 1 kvR~~Al~~L~al~k~~~~ 19 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDK 19 (182)
T ss_pred ChhHHHHHHHHHHHHhcCC
Confidence 3677788888777777544
No 184
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=96.37 E-value=1.1 Score=43.64 Aligned_cols=251 Identities=10% Similarity=0.078 Sum_probs=140.5
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhCCcc----cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH--HHHhhhhHh
Q 009632 250 SQDKSWRVRYMVANQLYELCEAVGPEP----TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPC 323 (530)
Q Consensus 250 ~~d~~~~vr~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~ 323 (530)
..+.+|..-..+.+.|-.+......+. ....++..++.++..+++.-|......+..+...+... .+...+...
T Consensus 99 ~~e~~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~ 178 (409)
T PF01603_consen 99 FLEPSWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNI 178 (409)
T ss_dssp ---TTHHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHH
T ss_pred ccccccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 456778877777777777766544332 34467778888888888888888888888776654321 222333333
Q ss_pred HhHhcc-CCcHHHHHHHHHHHHhhccccC---HHHHHHhHHHHHHHhhcCCChH-HHHHHHHhhHHhhhhhchhHHHhhH
Q 009632 324 VKELSS-DSSQHVRSALASVIMGMAPLLG---KDATIEQLLPIFLSLLKDEFPD-VRLNIISKLDQVNQVIGIDLLSQSL 398 (530)
Q Consensus 324 l~~~~~-d~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~-vr~~a~~~l~~l~~~~~~~~~~~~l 398 (530)
+.+... ......-..+++.++.+...+. ++.....+...++.+.+.+... --......+..++.. ...+...+
T Consensus 179 ~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~k--dp~l~~~~ 256 (409)
T PF01603_consen 179 FYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEK--DPSLAEPV 256 (409)
T ss_dssp HHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH---GGGHHHH
T ss_pred HHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh--CchhHHHH
Confidence 333333 2333344566677777766543 2444444555555565554322 123333333333321 11122344
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHH---HHHHHHHHHhcCCcHHHHHHHHHHHHHH--HHHhChhHHh
Q 009632 399 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDD---KLGALCMQWLQDKVYSIRDAAANNLKRL--AEEFGPEWAM 473 (530)
Q Consensus 399 ~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~---~~~~~l~~~l~d~~~~Vr~~a~~~l~~l--~~~~~~~~~~ 473 (530)
+..+.+.---.+..-....+.-+..+...++++.+.. .++..+-.++..++.+|-+.|+..+..= ...+... .
T Consensus 257 i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~~--~ 334 (409)
T PF01603_consen 257 IKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQN--S 334 (409)
T ss_dssp HHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHCT--H
T ss_pred HHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHhC--h
Confidence 4555554444556666778888888888887776654 4556667788999999999999887432 2222111 1
Q ss_pred hhhHHHHHhhcc-----CCChHHHHHHHHHHHHHhh
Q 009632 474 QHITPQVLEMIN-----NPHYLYRMTILRAISLLAP 504 (530)
Q Consensus 474 ~~i~~~l~~~~~-----d~~~~vr~~a~~~l~~i~~ 504 (530)
..++|.+...+. +=|..||..+..++..+.+
T Consensus 335 ~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~ 370 (409)
T PF01603_consen 335 RVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILME 370 (409)
T ss_dssp HHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 345555555432 2267799999999988876
No 185
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=96.28 E-value=0.76 Score=44.87 Aligned_cols=193 Identities=12% Similarity=0.143 Sum_probs=109.6
Q ss_pred HHHHHHHHHHhhcCCC-ChhHHHHHHHHHHHHHhhhcc---h---hhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhh
Q 009632 160 LKTELRSIYTQLCQDD-MPMVRRSAASNLGKFAATVEP---A---HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKL 232 (530)
Q Consensus 160 ~~~~l~~~l~~l~~d~-~~~vR~~a~~~l~~l~~~~~~---~---~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~ 232 (530)
..+.+...+...++++ +|.--+...++++.+.+...+ + .+.+.++|.+...+..+-.+.--.+.+.++.+.+.
T Consensus 68 il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~ 147 (435)
T PF03378_consen 68 ILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLEL 147 (435)
T ss_dssp HHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4566667777777665 688899999999999987553 2 46778999999999887666666677778877777
Q ss_pred cCchhhhhccHHHHHHhcCCCCHHHH---HHHHHHHHHHHHHhCCc----ccccchHHHHHHhcCCCcHHHHHHHHHHHH
Q 009632 233 LEPQDCVAHILPVIVNFSQDKSWRVR---YMVANQLYELCEAVGPE----PTRMDLVPAYVRLLRDNEAEVRIAAAGKVT 305 (530)
Q Consensus 233 ~~~~~~~~~~~~~l~~~~~d~~~~vr---~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~ 305 (530)
.+.....+.....+..++...-|.-| -+....+..+.+.-+.. ...+.++..+.+++.....+ ..+.+-+.
T Consensus 148 ~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~ 225 (435)
T PF03378_consen 148 RPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAND--HYGFDLLE 225 (435)
T ss_dssp SS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH--HHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc--hHHHHHHH
Confidence 65222222333333333343334322 22333344433332222 22456788888888766544 35778888
Q ss_pred HHHHhhCHHHHHh---hhhHhH-hHhccCCcHHHHHHHHHHHHhhccccCHHH
Q 009632 306 KFCRILNPELAIQ---HILPCV-KELSSDSSQHVRSALASVIMGMAPLLGKDA 354 (530)
Q Consensus 306 ~~~~~~~~~~~~~---~l~~~l-~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~ 354 (530)
.+...++.+.+.+ .++..+ ..+-+.+.++.+...+..++.++...|.+.
T Consensus 226 ~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~~ 278 (435)
T PF03378_consen 226 SIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPDF 278 (435)
T ss_dssp HHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHHH
Confidence 8888888764422 222222 223345566666666666666655445443
No 186
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.28 E-value=1.6 Score=44.54 Aligned_cols=70 Identities=19% Similarity=0.262 Sum_probs=44.3
Q ss_pred CCCcCcHHHHHHHhc-ChhHHHHHHHhhcHHHHHHhhChHhhhhccccccccc--cCCchHHHHHHHHHHhcc
Q 009632 5 DEPLYPIAVLIDELK-NDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSEN--NDDDDEVLLAMAEELGVF 74 (530)
Q Consensus 5 ~~~~~~~~~l~~~l~-~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~--~d~~~~vr~~~~~~l~~~ 74 (530)
++.-+.|..|.+... ++=..-|..|+.+|..+++.+-.+.....+-|++..+ ...+++....+-..+..+
T Consensus 18 ~s~aETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il 90 (970)
T KOG0946|consen 18 QSAAETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLIL 90 (970)
T ss_pred ccHHhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHH
Confidence 345677888888887 5667779999999999988765444333333444332 224666666555555433
No 187
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=96.12 E-value=0.14 Score=48.34 Aligned_cols=132 Identities=19% Similarity=0.262 Sum_probs=84.0
Q ss_pred HhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCC-------ChHHHHHHHHHHHHHHhh--hChhhHHH
Q 009632 365 SLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR-------HWRVRLAIIEYIPLLASQ--LGVGFFDD 435 (530)
Q Consensus 365 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~-------~~~~R~~~~~~l~~l~~~--~~~~~~~~ 435 (530)
..+.+++...|..|+..|..= .-...++|.+..++.+. +...-...+..+..+... +.-+.+..
T Consensus 185 ~a~~~~~~~~r~~aL~sL~tD-------~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh 257 (343)
T cd08050 185 EALVGSNEEKRREALQSLRTD-------PGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLH 257 (343)
T ss_pred HHHhCCCHHHHHHHHHHhccC-------CCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHH
Confidence 334456677788777666542 22356777777765443 344444444444444432 23444567
Q ss_pred HHHHHHHHHh----------cCCcHHHHHHHHHHHHHHHHHhChhH--HhhhhHHHHHhhccCCChH--HHHHHHHHHHH
Q 009632 436 KLGALCMQWL----------QDKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNPHYL--YRMTILRAISL 501 (530)
Q Consensus 436 ~~~~~l~~~l----------~d~~~~Vr~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~~~d~~~~--vr~~a~~~l~~ 501 (530)
.++|.++.++ .+..+.+|..|+..++.+++.++... ....+...+.+.+.|++.. .+-+|+..+..
T Consensus 258 ~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~ 337 (343)
T cd08050 258 QLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSA 337 (343)
T ss_pred HHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHH
Confidence 7899888876 45778999999999999999997652 3356666777777776433 46666666665
Q ss_pred Hh
Q 009632 502 LA 503 (530)
Q Consensus 502 i~ 503 (530)
+.
T Consensus 338 lG 339 (343)
T cd08050 338 LG 339 (343)
T ss_pred hC
Confidence 54
No 188
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=95.96 E-value=1.3 Score=41.24 Aligned_cols=67 Identities=21% Similarity=0.265 Sum_probs=40.7
Q ss_pred hhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhc
Q 009632 141 ARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ 212 (530)
Q Consensus 141 ~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~ 212 (530)
.+..|.++++...++++ +....-+..-+.+|+|.+..||+.|+..|+.++.. ...+.+.+.+.++++
T Consensus 40 ~k~lasq~ip~~fk~fp-~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~----d~~~rv~d~l~qLLn 106 (460)
T KOG2213|consen 40 EKRLASQFIPRFFKHFP-SLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG----DALSRVNDVLVQLLN 106 (460)
T ss_pred HHHHHHHHHHHHHhhCc-hhhhHHHHhhhccccccchhhHHHHHhccchhccC----chhhhhHHHHHHHHH
Confidence 34456666666665543 34455566666677777777777777777776654 334555566666555
No 189
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=95.87 E-value=0.36 Score=40.21 Aligned_cols=114 Identities=16% Similarity=0.109 Sum_probs=68.6
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhC-hhh--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH---HHHhCh
Q 009632 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG-VGF--FDDKLGALCMQWLQDKVYSIRDAAANNLKRL---AEEFGP 469 (530)
Q Consensus 396 ~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~-~~~--~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l---~~~~~~ 469 (530)
..++|.+.+-+.+.....|..|.+.+..+...-+ .+. +..++++.+.+.++.++++|...++++|..+ ....|+
T Consensus 37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~ 116 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGE 116 (183)
T ss_pred hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhH
Confidence 3566666666666666667777777776666522 221 2355666677777778888888888888777 444454
Q ss_pred hHHh--hhhHHHHHhhcc-----------CCChHHHHHHHHHHHHHhhhcChH
Q 009632 470 EWAM--QHITPQVLEMIN-----------NPHYLYRMTILRAISLLAPVMGSE 509 (530)
Q Consensus 470 ~~~~--~~i~~~l~~~~~-----------d~~~~vr~~a~~~l~~i~~~~~~~ 509 (530)
.... ..++|.+.-+.+ ..+..++....+++..+...-|++
T Consensus 117 aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~d 169 (183)
T PF10274_consen 117 ALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPD 169 (183)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChh
Confidence 4322 445555542211 123456666777777776666654
No 190
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.62 E-value=3.2 Score=44.44 Aligned_cols=132 Identities=21% Similarity=0.172 Sum_probs=97.0
Q ss_pred cCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhh----chhHHHhhHHHHHHH
Q 009632 329 SDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI----GIDLLSQSLLPAIVE 404 (530)
Q Consensus 329 ~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~----~~~~~~~~l~~~l~~ 404 (530)
.|-.+.+|..+++.++.++...+.-++....+.++==.|.|.+..||...+.++..+...- +-+.+...+-..+++
T Consensus 297 RDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVe 376 (1048)
T KOG2011|consen 297 RDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVE 376 (1048)
T ss_pred ccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 5888999999999999999988877777777787777789999999999999999998761 123344566666777
Q ss_pred Hh-cCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Q 009632 405 LA-EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRL 463 (530)
Q Consensus 405 ~~-~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l 463 (530)
++ .|-+..||...+..+..... .......=+-.+..++-|..+.++.+|...+..-
T Consensus 377 Madrd~~~~Vrav~L~~~~~~~~---~g~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~k 433 (1048)
T KOG2011|consen 377 MADRDRNVSVRAVGLVLCLLLSS---SGLLSDKDILIVYSLIYDSNRRVAVAAGEFLYKK 433 (1048)
T ss_pred HHhhhcchhHHHHHHHHHHHHhc---ccccChhHHHHHHHHHhccCcchHHHHHHHHHHH
Confidence 76 55577788887776655422 1122222233466778899999999998877543
No 191
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.60 E-value=1.9 Score=39.86 Aligned_cols=176 Identities=14% Similarity=0.031 Sum_probs=108.3
Q ss_pred CCcHHHHHHHHHHHHhhccccCH--HHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhH---HHhhHHHHHHH
Q 009632 330 DSSQHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL---LSQSLLPAIVE 404 (530)
Q Consensus 330 d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~ 404 (530)
..+..-|..+..-+..+++.+.. +...-..++.+...+++.+..+|..|+..++.....-...+ +....++.|..
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 34556777777777777766543 22223345556669999999999999999999876543211 12234455544
Q ss_pred Hh-cCCChHHHHHHHHHHHHHHhhhChhh---HHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHHHHhChh--HHhhhh
Q 009632 405 LA-EDRHWRVRLAIIEYIPLLASQLGVGF---FDDKLGALCMQWLQD--KVYSIRDAAANNLKRLAEEFGPE--WAMQHI 476 (530)
Q Consensus 405 ~~-~~~~~~~R~~~~~~l~~l~~~~~~~~---~~~~~~~~l~~~l~d--~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~i 476 (530)
.+ ++.+-++|..|+.+++.+.....+.. +.-.=...+...+.+ .+...+..++..++.+......+ ......
T Consensus 174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~ 253 (342)
T KOG2160|consen 174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLG 253 (342)
T ss_pred HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhh
Confidence 44 55567899999999999987654332 221223445566666 55667788888888887654322 111222
Q ss_pred HHH-HHhhccCCChHHHHHHHHHHHHHhhh
Q 009632 477 TPQ-VLEMINNPHYLYRMTILRAISLLAPV 505 (530)
Q Consensus 477 ~~~-l~~~~~d~~~~vr~~a~~~l~~i~~~ 505 (530)
.+. +..+...-+++++..++.++-.....
T Consensus 254 f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 254 FQRVLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred hhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 232 23334455777788777777665543
No 192
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=95.57 E-value=0.048 Score=39.99 Aligned_cols=71 Identities=24% Similarity=0.342 Sum_probs=52.1
Q ss_pred cCCcHHHHHHHHHHHHHHHHHhChh--HHhhhhHHHHHhhccCC--ChHHHHHHHHHHHHHhhhcChHHHHhhHHHHHH
Q 009632 446 QDKVYSIRDAAANNLKRLAEEFGPE--WAMQHITPQVLEMINNP--HYLYRMTILRAISLLAPVMGSEITCSRLLPVVI 520 (530)
Q Consensus 446 ~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~d~--~~~vr~~a~~~l~~i~~~~~~~~~~~~~~p~l~ 520 (530)
.|+++.+|..|++.++.++..++.. ..+..+...+.+.+.|+ +...+-+|+..+..+ |++.+...++|.+.
T Consensus 16 ~~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l----G~~~vr~~ilP~l~ 90 (92)
T PF07571_consen 16 VDNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL----GPEAVRALILPNLK 90 (92)
T ss_pred CcchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH----HHHHHHHhhccCcC
Confidence 3668899999999999999998754 24567788888888876 445667777776665 55666666777654
No 193
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.57 E-value=0.62 Score=42.87 Aligned_cols=131 Identities=14% Similarity=0.071 Sum_probs=80.2
Q ss_pred hhHHHHhHhhhhcCCCChH---HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcch---hhHHHHHHHHHHhh-cC
Q 009632 141 ARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA---HLKTDIMSIFEDLT-QD 213 (530)
Q Consensus 141 ~r~~~~~~l~~l~~~~~~~---~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~-~d 213 (530)
-+..+..-+..+++.+.-. ..-..+..+...+++++..+|..|+..++....+-++. ......++.+...+ .|
T Consensus 99 ~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~ 178 (342)
T KOG2160|consen 99 DKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSD 178 (342)
T ss_pred HHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccC
Confidence 3444555555554443322 11222333444888999999999999999999877662 12222444444444 55
Q ss_pred CchhHHHHHHHHHHHHhhhcCch--h-hhhccHHHHHHhcCC--CCHHHHHHHHHHHHHHHHH
Q 009632 214 DQDSVRLLAVEGCAALGKLLEPQ--D-CVAHILPVIVNFSQD--KSWRVRYMVANQLYELCEA 271 (530)
Q Consensus 214 ~~~~vr~~a~~~l~~l~~~~~~~--~-~~~~~~~~l~~~~~d--~~~~vr~~~~~~l~~l~~~ 271 (530)
+...+|..|+.++..+.+...+- . +.-.-...+...+++ .+.+.++-++..++.+...
T Consensus 179 ~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~ 241 (342)
T KOG2160|consen 179 DPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQE 241 (342)
T ss_pred CCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHh
Confidence 56679999999999999876552 1 122234555666665 5566777777777776654
No 194
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.55 E-value=5.1 Score=44.51 Aligned_cols=156 Identities=13% Similarity=0.117 Sum_probs=99.7
Q ss_pred HHhhhhHhHhHh-ccCCcHHHHHHHHHHHHhhc--cccC-HHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch
Q 009632 316 AIQHILPCVKEL-SSDSSQHVRSALASVIMGMA--PLLG-KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI 391 (530)
Q Consensus 316 ~~~~l~~~l~~~-~~d~~~~vr~~~~~~l~~l~--~~~~-~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 391 (530)
....++..+..+ ..+.+|++|.+++..+.... ..++ .+.-.+.+...+..++.|..-+||+.|+.++.-+.+.--.
T Consensus 1523 l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~ 1602 (1710)
T KOG1851|consen 1523 LQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSKF 1602 (1710)
T ss_pred hHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcccc
Confidence 345555566533 44678999999988877643 3333 2334567888899999999999999999999988765321
Q ss_pred hHHHhhHHHHHHH-HhcCCChHHHHHHHHHHHHHHhhhChh--hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC
Q 009632 392 DLLSQSLLPAIVE-LAEDRHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG 468 (530)
Q Consensus 392 ~~~~~~l~~~l~~-~~~~~~~~~R~~~~~~l~~l~~~~~~~--~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~ 468 (530)
....+...+.-.. .....+...+..|+..++.++-.++-. .+..+.+-.+.....++ ..++..+-+++..+-+...
T Consensus 1603 ~~~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e~-~~i~~tvkktvseFrrth~ 1681 (1710)
T KOG1851|consen 1603 QFVSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARES-AAIKQTVKKTVSEFRRTHA 1681 (1710)
T ss_pred ccchHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCCc-hHHHHHHHHHHHHHHHHhh
Confidence 1111111111111 123335667778888888887665422 13333444444455565 6789999999998888877
Q ss_pred hhHH
Q 009632 469 PEWA 472 (530)
Q Consensus 469 ~~~~ 472 (530)
.+|.
T Consensus 1682 D~W~ 1685 (1710)
T KOG1851|consen 1682 DTWR 1685 (1710)
T ss_pred hhhh
Confidence 6664
No 195
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=95.51 E-value=0.22 Score=41.14 Aligned_cols=73 Identities=14% Similarity=0.258 Sum_probs=45.0
Q ss_pred hhhccHHHHHHhcCCCC-HHHHHHHHHHHHHHHHHhCC--cccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHh
Q 009632 238 CVAHILPVIVNFSQDKS-WRVRYMVANQLYELCEAVGP--EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI 310 (530)
Q Consensus 238 ~~~~~~~~l~~~~~d~~-~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 310 (530)
+...++..+...++|++ ......+.+++..+.+..|. -.+.++++|.+++.++...+..|+..++.|+.+...
T Consensus 83 y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~i 158 (160)
T PF11865_consen 83 YPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVSI 158 (160)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 33445555666666644 23344566666666655442 345677778887777766667777777777766654
No 196
>PF05536 Neurochondrin: Neurochondrin
Probab=95.49 E-value=3.3 Score=41.95 Aligned_cols=153 Identities=14% Similarity=0.145 Sum_probs=87.5
Q ss_pred cHHHHHHhcCCCCH-HHHHHHHHHHHHHHHHh-CCcc-cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHH---
Q 009632 242 ILPVIVNFSQDKSW-RVRYMVANQLYELCEAV-GPEP-TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL--- 315 (530)
Q Consensus 242 ~~~~l~~~~~d~~~-~vr~~~~~~l~~l~~~~-~~~~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~--- 315 (530)
-+|.+.+.+...+. .+-..++++|..++..- |... ....-++.+.+.+.+ .+.....|+..+..+....+.+.
T Consensus 99 ~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~ 177 (543)
T PF05536_consen 99 RIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQKSWAE 177 (543)
T ss_pred HHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcchhhhhh
Confidence 45555555544333 45555555555555210 1111 112234444444444 34556666666666666555321
Q ss_pred ---HHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccC--------HHHHHHhHHHHHHHhhcCC-ChHHHHHHHHhhH
Q 009632 316 ---AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG--------KDATIEQLLPIFLSLLKDE-FPDVRLNIISKLD 383 (530)
Q Consensus 316 ---~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~--------~~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~ 383 (530)
....+++.+...........|..+++.++.+....+ ...+...+...+..+++.. .+.-|..++...+
T Consensus 178 ~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa 257 (543)
T PF05536_consen 178 DSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAA 257 (543)
T ss_pred hHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 122344444444444444556666777776654442 2456778888888888765 5778999999999
Q ss_pred HhhhhhchhHHH
Q 009632 384 QVNQVIGIDLLS 395 (530)
Q Consensus 384 ~l~~~~~~~~~~ 395 (530)
.+.+.+|.+|+.
T Consensus 258 ~Ll~~~G~~wl~ 269 (543)
T PF05536_consen 258 SLLDLLGPEWLF 269 (543)
T ss_pred HHHHHhChHhhc
Confidence 999999988753
No 197
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.47 E-value=3.8 Score=42.55 Aligned_cols=363 Identities=12% Similarity=0.080 Sum_probs=189.4
Q ss_pred hhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcCCCC-----hhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcC--
Q 009632 141 ARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDM-----PMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQD-- 213 (530)
Q Consensus 141 ~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~d~~-----~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d-- 213 (530)
.|......+...+..+++.....+...+-+++.|.+ |..-.+++-.+..++.+++... ...+|.+.+.+..
T Consensus 440 YR~diSD~~~~~Y~ilgd~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~--~~~i~rl~~~~asik 517 (982)
T KOG2022|consen 440 YRKDISDLLMSSYSILGDGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETE--STWIPRLFETSASIK 517 (982)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcch--hHHHHHHHHhccccc
Confidence 444555555555555565555556666666666555 8888889999999999888743 2335555554422
Q ss_pred ---CchhHHHHHHHHHHHHhhhcCchh-hhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcc--cccchHHHHHH
Q 009632 214 ---DQDSVRLLAVEGCAALGKLLEPQD-CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVR 287 (530)
Q Consensus 214 ---~~~~vr~~a~~~l~~l~~~~~~~~-~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~ 287 (530)
.++..-..+...++..+..++.+. +.+..+|.+.+.+..+ ..-..+...+..+++....+. +...++..+..
T Consensus 518 ~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~s--k~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e 595 (982)
T KOG2022|consen 518 LSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLHNS--KESEQAISTLKTLCETCPESLDPYADQFSAVCYE 595 (982)
T ss_pred cccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhcCc--hHHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHH
Confidence 256667778889999998887643 4567778777777532 233344445777777655432 23445555555
Q ss_pred hcCCC--cHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhH----hH---h----ccCCcHHHHHHHH-HHHHhhcccc---
Q 009632 288 LLRDN--EAEVRIAAAGKVTKFCRILNPELAIQHILPCV----KE---L----SSDSSQHVRSALA-SVIMGMAPLL--- 350 (530)
Q Consensus 288 ~l~d~--~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l----~~---~----~~d~~~~vr~~~~-~~l~~l~~~~--- 350 (530)
.+... .+..|...++++|.+.....++...+.++..+ .+ . +++..-+.|.... ..++.+...+
T Consensus 596 ~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~~ 675 (982)
T KOG2022|consen 596 VLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLINK 675 (982)
T ss_pred HhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCCC
Confidence 55432 36789999999999988877654333332222 11 1 1122222222111 1222222111
Q ss_pred -------------------CHHHHHHhHHHHHHHhhc--CCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCC
Q 009632 351 -------------------GKDATIEQLLPIFLSLLK--DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR 409 (530)
Q Consensus 351 -------------------~~~~~~~~l~~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~ 409 (530)
..-.+..+++|++.+.+. -++..|-+.++..+..=....++. +.+..+|.+..++-.-
T Consensus 676 ~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~s-F~~p~l~~l~~Fi~r~ 754 (982)
T KOG2022|consen 676 KDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTS-FPEPMLPSLCPFIVRF 754 (982)
T ss_pred CccccccchhhhccccccCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhcccccccc-chhhhHHHHHHHHHHh
Confidence 111234556666665543 233455555555554433333333 3234444444333220
Q ss_pred ChHHHHHHHHHHHHHHh-hhChhh----HH---HHHHHHHHHHhc----CCcHHHHHHHHHHHHHHHHHhCh------hH
Q 009632 410 HWRVRLAIIEYIPLLAS-QLGVGF----FD---DKLGALCMQWLQ----DKVYSIRDAAANNLKRLAEEFGP------EW 471 (530)
Q Consensus 410 ~~~~R~~~~~~l~~l~~-~~~~~~----~~---~~~~~~l~~~l~----d~~~~Vr~~a~~~l~~l~~~~~~------~~ 471 (530)
....-...+.....+.. ..+.+. .. ...+...+.+.. .+.++.-.....++..+.+.... ..
T Consensus 755 ~~~~~a~tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~~~ 834 (982)
T KOG2022|consen 755 LTSCLAVTLSLIAACLLAKSTVEQCKPLVGQDMANAFQQSLLLFEQHPFSNQPDIYLQLIGFVRQILKKIPKFLEPSMLA 834 (982)
T ss_pred ccchHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhCcCccccchHH
Confidence 00000111111111111 011100 00 111111122222 24456667777777777765421 11
Q ss_pred HhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcCh
Q 009632 472 AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS 508 (530)
Q Consensus 472 ~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~ 508 (530)
+...+.++....++.|....-.++.+++..+....+.
T Consensus 835 ~ts~i~~~a~~ll~~pE~~~i~aa~qF~t~~~~~~~s 871 (982)
T KOG2022|consen 835 FTSLILICAFILLNSPEPTTIRAASQFLTALATYATS 871 (982)
T ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHhhccc
Confidence 2355677888888888777767788888887765554
No 198
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=95.46 E-value=1.4 Score=41.84 Aligned_cols=56 Identities=16% Similarity=0.067 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 009632 253 KSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCR 309 (530)
Q Consensus 253 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~ 309 (530)
.++........+|+.-...++.+ ....++..+...++|..+.+|+.-+.+++....
T Consensus 35 ~nE~aL~~~l~al~~~~~~~~~~-~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~ 90 (339)
T PF12074_consen 35 SNEAALSALLSALFKHLFFLSSE-LPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALW 90 (339)
T ss_pred cCHHHHHHHHHHHHHHHHHhCcC-CCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHh
Confidence 45566666666666555555222 245667777777777777777777777776654
No 199
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=95.41 E-value=0.57 Score=39.07 Aligned_cols=115 Identities=17% Similarity=0.218 Sum_probs=83.0
Q ss_pred HHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHH---HhhHHHHHHHHhcCCChHHHHHHHHHHHHH---HhhhC
Q 009632 356 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLL---ASQLG 429 (530)
Q Consensus 356 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~---~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l---~~~~~ 429 (530)
...++|.+..-|.+....-|-.|...+.++...-+.+.+ .+++++.+...++..+..+...++.++..+ ...+|
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG 115 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG 115 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 567899999999988888888888888888887344433 345666677778899999999999999999 66666
Q ss_pred hhh--HHHHHHHHHHHHhc-----------CCcHHHHHHHHHHHHHHHHHhChh
Q 009632 430 VGF--FDDKLGALCMQWLQ-----------DKVYSIRDAAANNLKRLAEEFGPE 470 (530)
Q Consensus 430 ~~~--~~~~~~~~l~~~l~-----------d~~~~Vr~~a~~~l~~l~~~~~~~ 470 (530)
... +..+++|.+-.+.+ ....+++...-.+|..+-+..|++
T Consensus 116 ~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~d 169 (183)
T PF10274_consen 116 EALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPD 169 (183)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChh
Confidence 543 44566776643222 233567777777777777776655
No 200
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=95.32 E-value=0.14 Score=42.23 Aligned_cols=129 Identities=17% Similarity=0.242 Sum_probs=80.7
Q ss_pred ccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChH-----HHHHHHHHHHhh
Q 009632 97 VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-----LKTELRSIYTQL 171 (530)
Q Consensus 97 d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~-----~~~~l~~~l~~l 171 (530)
...+++|..+.-++.++. ...++...+.+...+.....+........+...+..+.+..++- ..+.+++.+..+
T Consensus 16 ~~~~~~r~~a~v~l~k~l-~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~ 94 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLL-DAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPL 94 (157)
T ss_dssp TTSCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHH
T ss_pred CCCHhHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHH
Confidence 457889999988888886 33334456667777777776665556667777777777765542 234566667766
Q ss_pred cC--CCChhHHHHHHHHHHHHHhhhcc-hhhHHHHHHHHHHhhc-CCchh-HHHHHHHHH
Q 009632 172 CQ--DDMPMVRRSAASNLGKFAATVEP-AHLKTDIMSIFEDLTQ-DDQDS-VRLLAVEGC 226 (530)
Q Consensus 172 ~~--d~~~~vR~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~~~-d~~~~-vr~~a~~~l 226 (530)
+. .++..+...+++.+..-+..-.. ....++.++.+.+..+ ++++. +|..|.-.|
T Consensus 95 ~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L 154 (157)
T PF11701_consen 95 ASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGL 154 (157)
T ss_dssp HH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHH
T ss_pred HhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHH
Confidence 66 66777777777777665432111 3344556677777774 33444 566555444
No 201
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=95.19 E-value=3.5 Score=40.50 Aligned_cols=74 Identities=16% Similarity=0.158 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhcccccCCCccchhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhh---hhHHHHHHHHhc
Q 009632 62 EVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLV---DWYIPLVKRLAA 135 (530)
Q Consensus 62 ~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~---~~l~~~l~~l~~ 135 (530)
..|..++.+||.+..++.........-++|...+++....-|..|...+.+.++........ ..+.+.+...+.
T Consensus 102 r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~ 178 (441)
T PF12054_consen 102 RARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILE 178 (441)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHc
Confidence 56888999999998887644433344457888888999999999999999999877643322 245555555544
No 202
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=95.16 E-value=1.2 Score=39.07 Aligned_cols=131 Identities=15% Similarity=0.115 Sum_probs=79.1
Q ss_pred HHHHHHHHhcCCccchhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcC-CCChhHHHHH-HHHHHHHHhhhcchhhHHHH
Q 009632 126 YIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQ-DDMPMVRRSA-ASNLGKFAATVEPAHLKTDI 203 (530)
Q Consensus 126 l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~-d~~~~vR~~a-~~~l~~l~~~~~~~~~~~~l 203 (530)
...+...+.+++..+.|..++.++.......+.. .++.+...+. -.+|.+-... ...++.+.... +..
T Consensus 52 ~~~l~~~L~~~~~~E~~~la~~il~~~~~~~~~~----~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~------~~~ 121 (213)
T PF08713_consen 52 LYELADELWESGYREERYLALLILDKRRKKLTEE----DLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH------PEA 121 (213)
T ss_dssp HHHHHHHHHCSSCHHHHHHHHHHHHHCGGG--HH----HHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH------GGH
T ss_pred HHHHHHHHcCCchHHHHHHHHHHhHHHhhhhhHH----HHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh------HHH
Confidence 3445556666666667777777765544333322 3344444433 3466665555 33344443321 456
Q ss_pred HHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 009632 204 MSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCE 270 (530)
Q Consensus 204 ~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~ 270 (530)
.+.+.+.+.+++.-+|..++..+...... ...+.++..+...+.|++..||.+++.+|..++.
T Consensus 122 ~~~~~~W~~s~~~w~rR~~~v~~~~~~~~----~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~ 184 (213)
T PF08713_consen 122 LELLEKWAKSDNEWVRRAAIVMLLRYIRK----EDFDELLEIIEALLKDEEYYVQKAIGWALREIGK 184 (213)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHCTTTHGGG----CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 77888888888888888777665444433 2345577777777888888888888888877763
No 203
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=94.98 E-value=1.2 Score=36.96 Aligned_cols=124 Identities=15% Similarity=0.154 Sum_probs=86.4
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHH---HHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHhChh-
Q 009632 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD---DKLGALCMQWLQD-KVYSIRDAAANNLKRLAEEFGPE- 470 (530)
Q Consensus 396 ~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~---~~~~~~l~~~l~d-~~~~Vr~~a~~~l~~l~~~~~~~- 470 (530)
+.+...+..++++++...|-.++..+..+++..+.+.+. ...+..+++.++. ....+++.++.++..++...++.
T Consensus 24 ~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 24 HKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 566777888889999999999999999999888777764 3456666666665 34578999999999999876432
Q ss_pred -HHh-------hhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcCh--HHHHhhHHHHHHh
Q 009632 471 -WAM-------QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS--EITCSRLLPVVIN 521 (530)
Q Consensus 471 -~~~-------~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~--~~~~~~~~p~l~~ 521 (530)
... ..+++.+.++.++ ......++.++..++...+. ..+.+++-..+..
T Consensus 104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ 162 (165)
T PF08167_consen 104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLS 162 (165)
T ss_pred chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHH
Confidence 111 3345555555555 56677899999999887664 2344555444443
No 204
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=94.94 E-value=1.3 Score=42.01 Aligned_cols=55 Identities=16% Similarity=0.031 Sum_probs=33.9
Q ss_pred ccchhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHh
Q 009632 138 WFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAA 192 (530)
Q Consensus 138 ~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~ 192 (530)
++.........++.-...++.+.-+.+...+.+.+.|+.+.+|+.-+..++....
T Consensus 36 nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~ 90 (339)
T PF12074_consen 36 NEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALW 90 (339)
T ss_pred CHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHh
Confidence 3334444444444433333334446667777777888877788888888888765
No 205
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=94.86 E-value=4.2 Score=39.67 Aligned_cols=251 Identities=10% Similarity=0.014 Sum_probs=123.5
Q ss_pred cCCCChhHHHHHHHHHHHHHhhhcchh----hHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc--hhhhhccHHH
Q 009632 172 CQDDMPMVRRSAASNLGKFAATVEPAH----LKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP--QDCVAHILPV 245 (530)
Q Consensus 172 ~~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~~~~ 245 (530)
..|++|.--..+.+.+..+....+... +...++-.+..++..+++.-|......+..+-..+.. ..+...+...
T Consensus 99 ~~e~~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~ 178 (409)
T PF01603_consen 99 FLEPSWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNI 178 (409)
T ss_dssp ---TTHHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHH
T ss_pred ccccccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 446788877777888888777655433 5567888888899999998999888888876655433 1112222233
Q ss_pred HHHhcC-CCCHHHHHHHHHHHHHHHHHhCCcc---cccchHHHHHHhcCCCc-HHHHHHHHHHHHHHHHhhCHHHHHhhh
Q 009632 246 IVNFSQ-DKSWRVRYMVANQLYELCEAVGPEP---TRMDLVPAYVRLLRDNE-AEVRIAAAGKVTKFCRILNPELAIQHI 320 (530)
Q Consensus 246 l~~~~~-d~~~~vr~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~~~~~~~l 320 (530)
+.+... .....--..+.+.++.+..++.... ...-+...++.+.+.+. ........+++..+...-+. +...+
T Consensus 179 ~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~--l~~~~ 256 (409)
T PF01603_consen 179 FYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPS--LAEPV 256 (409)
T ss_dssp HHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GG--GHHHH
T ss_pred HHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch--hHHHH
Confidence 333322 2233334455556666665543211 11223333444444443 23344455555555542111 11222
Q ss_pred hHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHH---HhHHHHHHHhhcCCChHHHHHHHHhhHHh--hhhhchhHHH
Q 009632 321 LPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATI---EQLLPIFLSLLKDEFPDVRLNIISKLDQV--NQVIGIDLLS 395 (530)
Q Consensus 321 ~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~---~~l~~~l~~~l~d~~~~vr~~a~~~l~~l--~~~~~~~~~~ 395 (530)
+..+...---.+..-....+.-+..+...++++.+. ..+...+..+++.+...|-+.|+..+.+- ...+.. ..
T Consensus 257 i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~--~~ 334 (409)
T PF01603_consen 257 IKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQ--NS 334 (409)
T ss_dssp HHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHC--TH
T ss_pred HHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHh--Ch
Confidence 222222211223333344555566666666655443 34555566677788888888887766542 222211 12
Q ss_pred hhHHHHHHHHhcC---CCh--HHHHHHHHHHHHHHh
Q 009632 396 QSLLPAIVELAED---RHW--RVRLAIIEYIPLLAS 426 (530)
Q Consensus 396 ~~l~~~l~~~~~~---~~~--~~R~~~~~~l~~l~~ 426 (530)
+.++|.+...+.. .+| .+|..+..++..+.+
T Consensus 335 ~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~ 370 (409)
T PF01603_consen 335 RVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILME 370 (409)
T ss_dssp HHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3455555444322 233 477777666666544
No 206
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=94.86 E-value=0.4 Score=45.31 Aligned_cols=138 Identities=14% Similarity=0.187 Sum_probs=78.0
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCC-------chhHHHHHHHHHHHHhhh--cC
Q 009632 164 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDD-------QDSVRLLAVEGCAALGKL--LE 234 (530)
Q Consensus 164 l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~-------~~~vr~~a~~~l~~l~~~--~~ 234 (530)
.+..+.+.+.+.+...|..|+..|.. +.-...++|+|.+++.+. +-..-...++...++... +.
T Consensus 179 yf~~It~a~~~~~~~~r~~aL~sL~t-------D~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~ 251 (343)
T cd08050 179 YFEEITEALVGSNEEKRREALQSLRT-------DPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLH 251 (343)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhcc-------CCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCc
Confidence 33344444545677777777666533 233466788888777654 122222223333333321 12
Q ss_pred chhhhhccHHHHHHhc----------CCCCHHHHHHHHHHHHHHHHHhCCcc--cccchHHHHHHhcCCCc-H-HHHHHH
Q 009632 235 PQDCVAHILPVIVNFS----------QDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRDNE-A-EVRIAA 300 (530)
Q Consensus 235 ~~~~~~~~~~~l~~~~----------~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~-~-~vr~~a 300 (530)
-+.+...++|.+...+ .+.+|..|..++..++.++..++... ....+...+.+.+.|+. + .....|
T Consensus 252 le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGA 331 (343)
T cd08050 252 LEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGA 331 (343)
T ss_pred hHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHH
Confidence 2456667777776543 24678999999999999998887653 12345545555555543 2 235666
Q ss_pred HHHHHHHH
Q 009632 301 AGKVTKFC 308 (530)
Q Consensus 301 ~~~l~~~~ 308 (530)
+..|..++
T Consensus 332 i~GL~~lG 339 (343)
T cd08050 332 IVGLSALG 339 (343)
T ss_pred HHHHHHhC
Confidence 66665553
No 207
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=94.84 E-value=5 Score=40.42 Aligned_cols=88 Identities=16% Similarity=0.246 Sum_probs=59.0
Q ss_pred HHHHHHHhhhChhhHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHh----hccCCChHHHH
Q 009632 419 EYIPLLASQLGVGFFDDKLGALCMQWL-QDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLE----MINNPHYLYRM 493 (530)
Q Consensus 419 ~~l~~l~~~~~~~~~~~~~~~~l~~~l-~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~----~~~d~~~~vr~ 493 (530)
..++.+.+.+.++.+.+ ++-.+..++ ..+...+|.+++..++.+.+..-++..++.+.|.+.. ++.|++|-+++
T Consensus 463 ~l~~~~~~~l~~~~i~q-v~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q 541 (559)
T PF14868_consen 463 SLLSFFIQLLDPQLIEQ-VLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQ 541 (559)
T ss_pred HHHHHHHHhcChHHHHH-HHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHH
Confidence 33344444444544433 333334444 4555569999999998888776555555666676655 46899999999
Q ss_pred HHHHHHHHHhhhcC
Q 009632 494 TILRAISLLAPVMG 507 (530)
Q Consensus 494 ~a~~~l~~i~~~~~ 507 (530)
.|+++++.+++.-.
T Consensus 542 ~ALeAF~~FAe~T~ 555 (559)
T PF14868_consen 542 HALEAFGQFAERTS 555 (559)
T ss_pred HHHHHHHHHhccCC
Confidence 99999999987544
No 208
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=94.82 E-value=2 Score=42.02 Aligned_cols=128 Identities=16% Similarity=0.229 Sum_probs=77.7
Q ss_pred CCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCC--------ChHHHHHHHHHHHHHHhh--hChhhHHHHHH
Q 009632 369 DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR--------HWRVRLAIIEYIPLLASQ--LGVGFFDDKLG 438 (530)
Q Consensus 369 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~--------~~~~R~~~~~~l~~l~~~--~~~~~~~~~~~ 438 (530)
..++..|..|+..|.. +.-...++|.+..++.+. +-+.-...++.+..+.+. +--+.+...++
T Consensus 218 g~~~~~r~eAL~sL~T-------DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~lepYlh~L~ 290 (576)
T KOG2549|consen 218 GSDEPLRQEALQSLET-------DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLEPYLHQLV 290 (576)
T ss_pred cCCHHHHHHHHHhhcc-------CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccchhhHHHHHh
Confidence 3667788888777654 222356777777766543 122222223333333221 11233456678
Q ss_pred HHHHHHh----------cCCcHHHHHHHHHHHHHHHHHhChhHH--hhhhHHHHHhhccCC--ChHHHHHHHHHHHHHh
Q 009632 439 ALCMQWL----------QDKVYSIRDAAANNLKRLAEEFGPEWA--MQHITPQVLEMINNP--HYLYRMTILRAISLLA 503 (530)
Q Consensus 439 ~~l~~~l----------~d~~~~Vr~~a~~~l~~l~~~~~~~~~--~~~i~~~l~~~~~d~--~~~vr~~a~~~l~~i~ 503 (530)
|.++.++ .|++|.+|.-|+..+..++..++.... ...+...+.+.+.|+ .+..+-+++..+..+.
T Consensus 291 PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~lg 369 (576)
T KOG2549|consen 291 PSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAIAGLSELG 369 (576)
T ss_pred hHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHhh
Confidence 8777764 478899999999999999999875532 356777777777775 4455556666665554
No 209
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.74 E-value=3.9 Score=49.18 Aligned_cols=153 Identities=12% Similarity=0.065 Sum_probs=92.7
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhh----cc------hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhh
Q 009632 162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATV----EP------AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGK 231 (530)
Q Consensus 162 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~----~~------~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~ 231 (530)
..+++.+...+...+..++.....++..+.... +. -....++++.+.+++.|+.+.-|..++-.+..+..
T Consensus 983 ~i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~ 1062 (3550)
T KOG0889|consen 983 STFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIE 1062 (3550)
T ss_pred HHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehh
Confidence 346677777788888899999888888776532 21 23346788888888888888888877777777766
Q ss_pred hcCchh---hhhccHHHHHHhcCCCCHH--------HHHHHHHHHHHHHHHhCCcc----cccchHHHHHHhcCCCcHHH
Q 009632 232 LLEPQD---CVAHILPVIVNFSQDKSWR--------VRYMVANQLYELCEAVGPEP----TRMDLVPAYVRLLRDNEAEV 296 (530)
Q Consensus 232 ~~~~~~---~~~~~~~~l~~~~~d~~~~--------vr~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~v 296 (530)
..+... +...++..+...+.|...+ ++......+.......+.+. ....++..+...+.++++.|
T Consensus 1063 ~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~V 1142 (3550)
T KOG0889|consen 1063 SMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDV 1142 (3550)
T ss_pred hchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHH
Confidence 665321 1222333333333332211 22222222222221111111 12345566666777888899
Q ss_pred HHHHHHHHHHHHHhhCHH
Q 009632 297 RIAAAGKVTKFCRILNPE 314 (530)
Q Consensus 297 r~~a~~~l~~~~~~~~~~ 314 (530)
|+.+.+.|..+++..|..
T Consensus 1143 R~~~~~~L~~i~~~s~~~ 1160 (3550)
T KOG0889|consen 1143 REFSQKLLRLISELSGKS 1160 (3550)
T ss_pred HHHHHHHHHHHHHHcCCc
Confidence 999999999999887654
No 210
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.69 E-value=0.91 Score=42.53 Aligned_cols=114 Identities=19% Similarity=0.124 Sum_probs=87.8
Q ss_pred HHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh--HHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhh---HH
Q 009632 360 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF---FD 434 (530)
Q Consensus 360 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~---~~ 434 (530)
+.-++..++..+..||..|+..+..+....... ...-.+++.+..+..|.+..+|....+.+..+.....++. +.
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~ 139 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMV 139 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchH
Confidence 344566677888899999998888887662221 1124567777778889999999999999988766655443 45
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHh
Q 009632 435 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM 473 (530)
Q Consensus 435 ~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~ 473 (530)
..++|++...++.-.++||.-+...+..+...+++.+..
T Consensus 140 ~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~ 178 (393)
T KOG2149|consen 140 SLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSR 178 (393)
T ss_pred HHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHH
Confidence 678899999999999999999999999999999877654
No 211
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=94.68 E-value=1.9 Score=37.79 Aligned_cols=134 Identities=16% Similarity=0.181 Sum_probs=77.4
Q ss_pred HHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcCC-CCHHHHHHHH-HHHHHHHHHhCCcccc
Q 009632 201 TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQD-KSWRVRYMVA-NQLYELCEAVGPEPTR 278 (530)
Q Consensus 201 ~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d-~~~~vr~~~~-~~l~~l~~~~~~~~~~ 278 (530)
+........+..++..+.|..|+..+.......+.+ .++.+...+.+ ++|.+-..+| ..++.+....
T Consensus 50 ~~~~~l~~~L~~~~~~E~~~la~~il~~~~~~~~~~-----~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~------ 118 (213)
T PF08713_consen 50 EELYELADELWESGYREERYLALLILDKRRKKLTEE-----DLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH------ 118 (213)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHCGGG--HH-----HHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH------
T ss_pred hHHHHHHHHHcCCchHHHHHHHHHHhHHHhhhhhHH-----HHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh------
Confidence 344556666777777777777777776544333221 44555555554 5676666653 3344443221
Q ss_pred cchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccc
Q 009632 279 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL 349 (530)
Q Consensus 279 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~ 349 (530)
+.+.+.+.+-++++++-+|..++..+...... ...+.++..+...+.|++..||.++...+..++..
T Consensus 119 ~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~----~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~ 185 (213)
T PF08713_consen 119 PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK----EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKK 185 (213)
T ss_dssp GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG----CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh
Confidence 44566677777777777777776655444333 11245555666666777777777777777766543
No 212
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=94.67 E-value=1.2 Score=44.52 Aligned_cols=219 Identities=16% Similarity=0.176 Sum_probs=116.1
Q ss_pred CcHHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhccccccccccCCchHHHHHHHHHHhcccccCCCccchhcch
Q 009632 9 YPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLL 88 (530)
Q Consensus 9 ~~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~ 88 (530)
.+++.|.+++.+++...|..|+-+|+-.-..-..+.....|.|.+.+. +...+|...++..||-+.-.-.+.+....++
T Consensus 452 palALLsdyv~~~~s~~ri~aIlGLglayaGsq~e~V~~lL~Pi~~d~-~~~~ev~~~aslsLG~IfvGscn~dvts~il 530 (878)
T KOG2005|consen 452 PALALLSDYLQSSSSIHRIGAILGLGLAYAGSQREEVLELLSPIMFDT-KSPMEVVAFASLSLGMIFVGSCNEDVTSSIL 530 (878)
T ss_pred HHHHHHHHhccCCCceeehHHhhhhHHhhcCCchHHHHHHHhHHhcCC-CCchhHHHHHHhhcceeEEecCChHHHHHHH
Confidence 357788899999999999999999986433222344444555655432 2235788888888885533212244455555
Q ss_pred hHHHhhh--cccchHHHHHHHHHHHHHH--hh------------cChhhhhh---hHH----------------HHHHHH
Q 009632 89 PPLETLC--TVEETCVRDKAVESLCRIG--SQ------------MRESDLVD---WYI----------------PLVKRL 133 (530)
Q Consensus 89 ~~l~~l~--~d~~~~vR~~a~~~l~~l~--~~------------~~~~~~~~---~l~----------------~~l~~l 133 (530)
..|.+-. ..++.-.|..++ +|+.+. +. ++. .+.. .++ ..+..+
T Consensus 531 qtlmekse~El~d~~~RFL~L-GL~llflgkqe~~d~~~e~~~~i~~-~~~~~~~~lv~~caYaGTGnvl~Iq~q~ll~~ 608 (878)
T KOG2005|consen 531 QTLMEKSETELEDQWFRFLAL-GLALLFLGKQESVDAVVETIKAIEG-PIRKHESILVKSCAYAGTGNVLKIQSQLLLSF 608 (878)
T ss_pred HHHHHhhhhhhhchHHHHHHH-HHHHHHhcccchHHHHHHHHHHhhh-HHHHHHHHHHHHhhccccCceEEechhhhhhh
Confidence 5444322 223455555543 122111 11 000 0000 000 111122
Q ss_pred hcCCccc-hhHHHHhHhhhhcCCCChHH-HHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhh
Q 009632 134 AAGEWFT-ARVSACGLFHIAYPSAPDIL-KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLT 211 (530)
Q Consensus 134 ~~~~~~~-~r~~~~~~l~~l~~~~~~~~-~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~ 211 (530)
+.+.... -...-...++...-.++++. .+-.+..+-.++.=.++.+|++.-.+++-+.-.-|+ -.+++.+.++.
T Consensus 609 cgE~~~~~e~~~~~avLgiAliAMgeeig~eM~lR~f~h~l~yge~~iRravPLal~llsvSNPq----~~vlDtLsk~s 684 (878)
T KOG2005|consen 609 CGEHDADLESEQELAVLGIALIAMGEEIGSEMVLRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQ----VNVLDTLSKFS 684 (878)
T ss_pred cCCCccchhhhccchhhhhhhhhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhccCCCc----chHHHHHHHhc
Confidence 2211100 00000111121112233332 233444555666666788899888888877654433 24677888888
Q ss_pred cCCchhHHHHHHHHHHHHhhhcC
Q 009632 212 QDDQDSVRLLAVEGCAALGKLLE 234 (530)
Q Consensus 212 ~d~~~~vr~~a~~~l~~l~~~~~ 234 (530)
.|.+.+|-..++-+++-++....
T Consensus 685 hd~D~eva~naIfamGLiGAGTn 707 (878)
T KOG2005|consen 685 HDGDLEVAMNAIFAMGLIGAGTN 707 (878)
T ss_pred cCcchHHHHHHHHHhccccCCcc
Confidence 89888888888888887765544
No 213
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.66 E-value=14 Score=44.90 Aligned_cols=152 Identities=13% Similarity=0.075 Sum_probs=100.3
Q ss_pred hcchhHHHhhhcccchHHHHHHHHHHHHHHhhcCh----------hhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcC
Q 009632 85 HVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE----------SDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYP 154 (530)
Q Consensus 85 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~----------~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~ 154 (530)
..+++.|..-+..++..++..+..++..+.....- -.+-.++.+.+.+++.++.|..|..++..+..+..
T Consensus 983 ~i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~ 1062 (3550)
T KOG0889|consen 983 STFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIE 1062 (3550)
T ss_pred HHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehh
Confidence 44566677777788999999999999888664321 11345578888888999999999999998888888
Q ss_pred CCChH----HHHHHHHHHHhhcCCCChhH--------HHHHHHHHHHHHhhhcc----hhhHHHHHHHHHHhhcCCchhH
Q 009632 155 SAPDI----LKTELRSIYTQLCQDDMPMV--------RRSAASNLGKFAATVEP----AHLKTDIMSIFEDLTQDDQDSV 218 (530)
Q Consensus 155 ~~~~~----~~~~l~~~l~~l~~d~~~~v--------R~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~d~~~~v 218 (530)
.++.. ...+++..+...+.|...++ +......+..+...... ......++..+..-+.+++..|
T Consensus 1063 ~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~V 1142 (3550)
T KOG0889|consen 1063 SMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDV 1142 (3550)
T ss_pred hchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHH
Confidence 87743 33445555555454443222 22222222222221111 1233446666777788888999
Q ss_pred HHHHHHHHHHHhhhcCch
Q 009632 219 RLLAVEGCAALGKLLEPQ 236 (530)
Q Consensus 219 r~~a~~~l~~l~~~~~~~ 236 (530)
|+.+.+.|..+++..+.+
T Consensus 1143 R~~~~~~L~~i~~~s~~~ 1160 (3550)
T KOG0889|consen 1143 REFSQKLLRLISELSGKS 1160 (3550)
T ss_pred HHHHHHHHHHHHHHcCCc
Confidence 999999999999887653
No 214
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.63 E-value=5 Score=39.48 Aligned_cols=177 Identities=14% Similarity=0.171 Sum_probs=109.6
Q ss_pred HhHhccCCcHHHHHHHHHHHHhhccccC---HHHHHHhHHHHHHHhhc-------------------CCChHHHHHHHHh
Q 009632 324 VKELSSDSSQHVRSALASVIMGMAPLLG---KDATIEQLLPIFLSLLK-------------------DEFPDVRLNIISK 381 (530)
Q Consensus 324 l~~~~~d~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~-------------------d~~~~vr~~a~~~ 381 (530)
+.-.....++++-......+..+.+..- .+.....+-|++.++++ ++...-|..+.+.
T Consensus 296 lLl~~~h~~~evie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v~dv 375 (559)
T KOG2081|consen 296 LLLVAGHNDTEVIEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKVGDV 375 (559)
T ss_pred HHHhccCCchhhhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCccccCccchhHHHHHHHHHHHH
Confidence 3344566777777666666666554332 12222333344443331 1124679999999
Q ss_pred hHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhc--CCcHHHHHHHHHH
Q 009632 382 LDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ--DKVYSIRDAAANN 459 (530)
Q Consensus 382 l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~--d~~~~Vr~~a~~~ 459 (530)
+..+...+|.+...+...-.+.+ .+++|+.-++++..+..+++.+.+. .+.++|-+++++- +....+|..++..
T Consensus 376 l~Dv~~iigs~e~lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~--e~~i~pevl~~i~nlp~Q~~~~~ts~ll 451 (559)
T KOG2081|consen 376 LKDVAFIIGSDECLKQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPE--ENTIMPEVLKLICNLPEQAPLRYTSILL 451 (559)
T ss_pred HHHHHHHhCcHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCcc--ccchHHHHHHHHhCCccchhHHHHHHHH
Confidence 99999999987654444444433 4678999999999999999988765 3456666666543 2334499999999
Q ss_pred HHHHHHHhChhHHh-hhhHHHHHhhccCCChHHHHHHHHHHHHHhhhc
Q 009632 460 LKRLAEEFGPEWAM-QHITPQVLEMINNPHYLYRMTILRAISLLAPVM 506 (530)
Q Consensus 460 l~~l~~~~~~~~~~-~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~ 506 (530)
+|.+.+.+...... +-+...+...+.+.. ....+..++..++..+
T Consensus 452 ~g~~~ew~~~~p~~le~v~~~~~~~~~~~~--~as~~a~~~~~i~~~c 497 (559)
T KOG2081|consen 452 LGEYSEWVEQHPELLEPVLRYIRQGLQLKR--LASAAALAFHRICSAC 497 (559)
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHHHH
Confidence 99998877543221 333334444444444 5556666666665543
No 215
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=94.59 E-value=5 Score=39.33 Aligned_cols=217 Identities=12% Similarity=0.162 Sum_probs=112.2
Q ss_pred chhHHHHHHHHHHHHhhhcCc--hhhhhccHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHhCCc------ccccchHHHH
Q 009632 215 QDSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPE------PTRMDLVPAY 285 (530)
Q Consensus 215 ~~~vr~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~~~d-~~~~vr~~~~~~l~~l~~~~~~~------~~~~~l~~~l 285 (530)
|+.+-+...+.+..+.+.+.+ ....+++...+...+++ ++++.-....++++.+.+..... ...+.++|.+
T Consensus 43 NeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f 122 (435)
T PF03378_consen 43 NEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPF 122 (435)
T ss_dssp -HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Confidence 333444444444443333322 12334445555555555 45777777888888877765432 1245688888
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHH---HHHHHHHHhhccccC----HHHHHHh
Q 009632 286 VRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVR---SALASVIMGMAPLLG----KDATIEQ 358 (530)
Q Consensus 286 ~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr---~~~~~~l~~l~~~~~----~~~~~~~ 358 (530)
...+..+..+.---+.+-++.+.+........+.+...+..++...-|.-+ -++.+.+..+.+.-+ .......
T Consensus 123 ~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~~ 202 (435)
T PF03378_consen 123 QEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFIVANNQLEP 202 (435)
T ss_dssp HHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG----S-CHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhhcchhhHHH
Confidence 888876655555566777777776654222223333333333444444322 222233333222111 1233456
Q ss_pred HHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHH---hhHHHHHHHHh-cCCChHHHHHHHHHHHHHHhhhChhhH
Q 009632 359 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS---QSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQLGVGFF 433 (530)
Q Consensus 359 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~---~~l~~~l~~~~-~~~~~~~R~~~~~~l~~l~~~~~~~~~ 433 (530)
++.++..++..+..+ ..+...+..+...+..+.+. +.++..+...+ +++....+...+.+++.++...|++.+
T Consensus 203 iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~~l 279 (435)
T PF03378_consen 203 ILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPDFL 279 (435)
T ss_dssp HHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHHHH
Confidence 777788888766533 45777888888777765432 34444444333 456677778888888887777776654
No 216
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.54 E-value=7 Score=40.76 Aligned_cols=344 Identities=13% Similarity=0.082 Sum_probs=172.8
Q ss_pred hhhhHHHHHHHHhcCCc-----cchhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcC-----CCChhHHHHHHHHHHHHH
Q 009632 122 LVDWYIPLVKRLAAGEW-----FTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQ-----DDMPMVRRSAASNLGKFA 191 (530)
Q Consensus 122 ~~~~l~~~l~~l~~~~~-----~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~-----d~~~~vR~~a~~~l~~l~ 191 (530)
+...+...+.++..+.+ +..-.+++-.+...+..++...... +|.+.+.+. -.++..-..+...++.++
T Consensus 459 ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~-i~rl~~~~asik~S~~n~ql~~Tss~~igs~s 537 (982)
T KOG2022|consen 459 LLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETESTW-IPRLFETSASIKLSAPNPQLLSTSSDLIGSLS 537 (982)
T ss_pred HHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchhHH-HHHHHHhccccccccCChhHHHHHHHHHHHHH
Confidence 34445555666654432 3334456667777888877654443 333333322 236777888889999999
Q ss_pred hhhcc-hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCch--hhhhccHHHHHHhcCC--CCHHHHHHHHHHHH
Q 009632 192 ATVEP-AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ--DCVAHILPVIVNFSQD--KSWRVRYMVANQLY 266 (530)
Q Consensus 192 ~~~~~-~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d--~~~~vr~~~~~~l~ 266 (530)
..+++ +......+|.+.+.+..++ .-..++.++..+++.+..+ .+...++..+.+.+.. -....|..+..++|
T Consensus 538 ~~l~e~P~~ln~sl~~L~~~Lh~sk--~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIG 615 (982)
T KOG2022|consen 538 NWLGEHPMYLNPSLPLLFQGLHNSK--ESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIG 615 (982)
T ss_pred HHHhcCCcccCchHHHHHHHhcCch--HHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHH
Confidence 88877 4456677888888886443 3334555577777766542 2334444444444443 23458888999999
Q ss_pred HHHHHhCCccccc---chHHHHHHhc--------CCCcHHHHHHH-HHHHHHHHHhhC----------------------
Q 009632 267 ELCEAVGPEPTRM---DLVPAYVRLL--------RDNEAEVRIAA-AGKVTKFCRILN---------------------- 312 (530)
Q Consensus 267 ~l~~~~~~~~~~~---~l~~~l~~~l--------~d~~~~vr~~a-~~~l~~~~~~~~---------------------- 312 (530)
.+.+...++.... .++..+.+-+ .+++...|.+. +.++..+...+.
T Consensus 616 yvls~~~pEe~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~ 695 (982)
T KOG2022|consen 616 YVLSRLKPEEIPKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLINKKDIIDTDQPEQREEPFQQFP 695 (982)
T ss_pred HHHHhccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCccccccchhhhccccccCC
Confidence 9988776443222 2333332222 12222222221 122333333221
Q ss_pred HHHHHhhhhHhHhHhcc--CCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhh-hhh
Q 009632 313 PELAIQHILPCVKELSS--DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN-QVI 389 (530)
Q Consensus 313 ~~~~~~~l~~~l~~~~~--d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~-~~~ 389 (530)
.-.+...++|.+.+... -.+..+-.+++.....-....+.. |...++|-+...+..-.......++....... ..+
T Consensus 696 il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~s-F~~p~l~~l~~Fi~r~~~~~~a~tl~l~~~~l~~~~ 774 (982)
T KOG2022|consen 696 ILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTS-FPEPMLPSLCPFIVRFLTSCLAVTLSLIAACLLAKS 774 (982)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhcccccccc-chhhhHHHHHHHHHHhccchHHHHHHHHHHHHHhhh
Confidence 11234556666655433 122234444443333222233322 43333333333321100111111111111111 111
Q ss_pred chhHH----H---hhHHHHHHHHhc----CCChHHHHHHHHHHHHHHhhhC------hhhHHHHHHHHHHHHhcCCcHHH
Q 009632 390 GIDLL----S---QSLLPAIVELAE----DRHWRVRLAIIEYIPLLASQLG------VGFFDDKLGALCMQWLQDKVYSI 452 (530)
Q Consensus 390 ~~~~~----~---~~l~~~l~~~~~----~~~~~~R~~~~~~l~~l~~~~~------~~~~~~~~~~~l~~~l~d~~~~V 452 (530)
+.+.. . ...+..-..+.. ..+..+-...+.++..+.+... ...|...+++....++..+++--
T Consensus 775 ~~~~~~~lv~~~~~~~~q~sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~~~~ts~i~~~a~~ll~~pE~~~ 854 (982)
T KOG2022|consen 775 TVEQCKPLVGQDMANAFQQSLLLFEQHPFSNQPDIYLQLIGFVRQILKKIPKFLEPSMLAFTSLILICAFILLNSPEPTT 854 (982)
T ss_pred ccccccccHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhCcCccccchHHHHHHHHHHHHHhcCCCccHH
Confidence 11110 0 111111111112 2245566677777777766543 23355668888999999999888
Q ss_pred HHHHHHHHHHHHHHhCh
Q 009632 453 RDAAANNLKRLAEEFGP 469 (530)
Q Consensus 453 r~~a~~~l~~l~~~~~~ 469 (530)
-.++++.+..+....++
T Consensus 855 i~aa~qF~t~~~~~~~s 871 (982)
T KOG2022|consen 855 IRAASQFLTALATYATS 871 (982)
T ss_pred HHHHHHHHHHHHhhccc
Confidence 88888888887766554
No 217
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=94.51 E-value=4.2 Score=38.14 Aligned_cols=188 Identities=14% Similarity=0.073 Sum_probs=111.1
Q ss_pred ccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhh-CHH-----HHH----hhhhHhHhHhccCCcHHHHHHHHHHHHhhc
Q 009632 278 RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL-NPE-----LAI----QHILPCVKELSSDSSQHVRSALASVIMGMA 347 (530)
Q Consensus 278 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~-~~~-----~~~----~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~ 347 (530)
...+++.++..+..-+.+.|+.+...+..+...- +.. .+. +.++..+...-++++--.- +...+-..+
T Consensus 74 ~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~--~g~mlRec~ 151 (335)
T PF08569_consen 74 RSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALN--CGDMLRECI 151 (335)
T ss_dssp HHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHH--HHHHHHHHT
T ss_pred HhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccch--HHHHHHHHH
Confidence 4567888888888888899998888888776642 211 111 2334444433333332111 111111111
Q ss_pred ccc--CHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhh---chhHH---HhhHHHHHHHHhcCCChHHHHHHHH
Q 009632 348 PLL--GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI---GIDLL---SQSLLPAIVELAEDRHWRVRLAIIE 419 (530)
Q Consensus 348 ~~~--~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~---~~~~~---~~~l~~~l~~~~~~~~~~~R~~~~~ 419 (530)
..- ..-......+--+....+.++.+|-..|..++..+.... ..+.+ .+.++.....++.++||=+|..++.
T Consensus 152 k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslk 231 (335)
T PF08569_consen 152 KHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLK 231 (335)
T ss_dssp TSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHH
T ss_pred hhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHH
Confidence 100 000011112223556778888999999988888876432 22222 2456667788899999999999999
Q ss_pred HHHHHHhhhChhhH------HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh
Q 009632 420 YIPLLASQLGVGFF------DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF 467 (530)
Q Consensus 420 ~l~~l~~~~~~~~~------~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~ 467 (530)
.++.+.---..-.+ ...-+..++.++.|+..++|..|..++..++..-
T Consensus 232 LL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 232 LLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp HHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence 99988642211111 2446788999999999999999999999888764
No 218
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=94.49 E-value=0.46 Score=46.14 Aligned_cols=139 Identities=14% Similarity=0.231 Sum_probs=84.7
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCch-hHHHHHHHHHHHHhhh---cCc----
Q 009632 164 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQD-SVRLLAVEGCAALGKL---LEP---- 235 (530)
Q Consensus 164 l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~-~vr~~a~~~l~~l~~~---~~~---- 235 (530)
....+.+.|.+.++..|+.|++.|.. +.-...++|+|..++.+.-. .|-..-++.|.++.+. +-.
T Consensus 208 Yy~~It~a~~g~~~~~r~eAL~sL~T-------DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i 280 (576)
T KOG2549|consen 208 YYKEITEACTGSDEPLRQEALQSLET-------DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNI 280 (576)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcc-------CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCcc
Confidence 44445555566888899999888754 22246788888888876521 2222223333333322 111
Q ss_pred --hhhhhccHHHHHHhc----------CCCCHHHHHHHHHHHHHHHHHhCCcc--cccchHHHHHHhcCCC--cHHHHHH
Q 009632 236 --QDCVAHILPVIVNFS----------QDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRDN--EAEVRIA 299 (530)
Q Consensus 236 --~~~~~~~~~~l~~~~----------~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~--~~~vr~~ 299 (530)
+.|...++|.+...+ .|.+|.+|..++..+..++..++... ....+...+.+.+.|+ .+.....
T Consensus 281 ~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YG 360 (576)
T KOG2549|consen 281 FLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYG 360 (576)
T ss_pred chhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhh
Confidence 446666777776532 35678888888888888887776543 1334566666666665 3556677
Q ss_pred HHHHHHHHHH
Q 009632 300 AAGKVTKFCR 309 (530)
Q Consensus 300 a~~~l~~~~~ 309 (530)
++..|..+..
T Consensus 361 ai~gL~~lg~ 370 (576)
T KOG2549|consen 361 AIAGLSELGH 370 (576)
T ss_pred HHHHHHHhhh
Confidence 7777766654
No 219
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=94.45 E-value=3.2 Score=38.13 Aligned_cols=40 Identities=18% Similarity=0.311 Sum_probs=31.9
Q ss_pred HHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh
Q 009632 353 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 392 (530)
Q Consensus 353 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 392 (530)
+....-++|.++.++.|.+..+|...+..+..+.......
T Consensus 114 ~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~ 153 (282)
T PF10521_consen 114 SQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAA 153 (282)
T ss_pred HHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChh
Confidence 3445678899999999999999999999998888765543
No 220
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=94.34 E-value=1.5 Score=36.45 Aligned_cols=107 Identities=14% Similarity=0.091 Sum_probs=66.9
Q ss_pred HHHHHHHHhcCCccchhHHHHhHhhhhcCCCChH----HHHHHHHHHHhhcCC-CChhHHHHHHHHHHHHHhhhcch-h-
Q 009632 126 YIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----LKTELRSIYTQLCQD-DMPMVRRSAASNLGKFAATVEPA-H- 198 (530)
Q Consensus 126 l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~----~~~~l~~~l~~l~~d-~~~~vR~~a~~~l~~l~~~~~~~-~- 198 (530)
+...+..+.+++++..|..++.++.......+.+ .....+..+...++. ..+.+++.++.++..+.....+. .
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l 105 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTL 105 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCch
Confidence 4445566667777777777777777777666544 223444555555544 45668899999999988776541 1
Q ss_pred -------hHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcC
Q 009632 199 -------LKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLE 234 (530)
Q Consensus 199 -------~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~ 234 (530)
..+.+++.+.+++++ ..+...++.++..+....+
T Consensus 106 ~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~p 146 (165)
T PF08167_consen 106 TREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHP 146 (165)
T ss_pred HHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCC
Confidence 123455555566665 4566667777777666544
No 221
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.33 E-value=7.3 Score=40.12 Aligned_cols=157 Identities=20% Similarity=0.162 Sum_probs=99.1
Q ss_pred ChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCC-ChHHHHHHHHHHHHHHhhh--ChhhHHH---HHHHHHHHH
Q 009632 371 FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQL--GVGFFDD---KLGALCMQW 444 (530)
Q Consensus 371 ~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~-~~~~R~~~~~~l~~l~~~~--~~~~~~~---~~~~~l~~~ 444 (530)
..-+|...+-.++.-...--.......+-..+.+++.|. +--+|.+++.++..+..-. .++.|.+ .+.-.+.++
T Consensus 500 ~RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkl 579 (978)
T KOG1993|consen 500 SRIIRRRVAWILGQWVSVQQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKL 579 (978)
T ss_pred hhHHHHHHHHHHhhhhheechHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHH
Confidence 345677777777666554333344455566677888887 6779999999998887643 2333332 223333333
Q ss_pred hcC-CcHHHHHHHHHHHHHHHHHhChhHH--h---hhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcCh--HHHHhhHH
Q 009632 445 LQD-KVYSIRDAAANNLKRLAEEFGPEWA--M---QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS--EITCSRLL 516 (530)
Q Consensus 445 l~d-~~~~Vr~~a~~~l~~l~~~~~~~~~--~---~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~--~~~~~~~~ 516 (530)
+.. ..-+-|...+..++.+....++... . -.++|.+-+-. .+..-.|.+.+.++.+++..+|. ..+.+.++
T Consensus 580 l~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s-~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~ 658 (978)
T KOG1993|consen 580 LKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEES-EEEPLLRCALLATLRNLVNALGAQSFEFYPFLY 658 (978)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh-ccCcHHHHHHHHHHHHHHHHhccCCccchHHHH
Confidence 331 2334678888888888887765421 1 22344443322 35667899999999999999885 45677888
Q ss_pred HHHHhhccCCCC
Q 009632 517 PVVINASKDRYL 528 (530)
Q Consensus 517 p~l~~~l~D~~~ 528 (530)
|.+....+-..|
T Consensus 659 pVIel~~D~~sP 670 (978)
T KOG1993|consen 659 PVIELSTDPSSP 670 (978)
T ss_pred HHHHHhcCCCCC
Confidence 877766555544
No 222
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=94.32 E-value=1.4 Score=40.45 Aligned_cols=131 Identities=15% Similarity=0.232 Sum_probs=94.8
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhh---HH-----HHHHHHHHHHhc--------CCcHHHHHHHHHH
Q 009632 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF---FD-----DKLGALCMQWLQ--------DKVYSIRDAAANN 459 (530)
Q Consensus 396 ~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~---~~-----~~~~~~l~~~l~--------d~~~~Vr~~a~~~ 459 (530)
..++|.+..++.|.+..+|..++.++..+...+.... +. +.+.+.+..++. +....+=..|..+
T Consensus 118 ~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~ 197 (282)
T PF10521_consen 118 PLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPA 197 (282)
T ss_pred hHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHH
Confidence 5789999999999999999999999999998776555 32 334555555555 6777888899999
Q ss_pred HHHHHHHhCh---h----HHhhhhHHHHHhhcc-C---CChHHHHHHHHHHHHHhhhcChH--HHHhhHHHHHHhhccCC
Q 009632 460 LKRLAEEFGP---E----WAMQHITPQVLEMIN-N---PHYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDR 526 (530)
Q Consensus 460 l~~l~~~~~~---~----~~~~~i~~~l~~~~~-d---~~~~vr~~a~~~l~~i~~~~~~~--~~~~~~~p~l~~~l~D~ 526 (530)
+-.++..... . ...+.+...+...+. - +..+++...++.+..++..+|-. .....++|.+.+.+.||
T Consensus 198 L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~np 277 (282)
T PF10521_consen 198 LLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILENP 277 (282)
T ss_pred HHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence 9888765311 1 111222222333222 2 35889999999999999998854 45888999999988886
No 223
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=94.16 E-value=4.7 Score=37.26 Aligned_cols=178 Identities=18% Similarity=0.118 Sum_probs=119.8
Q ss_pred hHHHHHHhcCCCc-HHHHHHHHHHHHHHHHhhCHHHHHhh---hhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHH
Q 009632 281 LVPAYVRLLRDNE-AEVRIAAAGKVTKFCRILNPELAIQH---ILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATI 356 (530)
Q Consensus 281 l~~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~~~~~~~---l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~ 356 (530)
+-..+-++++-.= .-|...|++....+.+.+|++.+.+. ..|-+..+....+-.||...+..+....-.+|. ...
T Consensus 55 v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~-~L~ 133 (307)
T PF04118_consen 55 VSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGP-ALR 133 (307)
T ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccH-HHH
Confidence 3334444444332 46999999999999999998754332 234444455666778999999998887666776 433
Q ss_pred H---hHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhC----
Q 009632 357 E---QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---- 429 (530)
Q Consensus 357 ~---~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~---- 429 (530)
. .++..++..+.|+..++-..+...+..+...+|.+.+-+.+.-.+. .++..|..|+.++..-.....
T Consensus 134 p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii-----~sp~~Rl~al~~l~~~l~~~~~~~~ 208 (307)
T PF04118_consen 134 PCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCII-----TSPSRRLGALNYLLRRLPKFQNDEL 208 (307)
T ss_pred HHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHh-----cCcchhHHHHHHHHHhCCccccccc
Confidence 3 3444445556789999999999999999999987754444443332 457799999988865544333
Q ss_pred --hh-h---H----HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Q 009632 430 --VG-F---F----DDKLGALCMQWLQDKVYSIRDAAANNLKRLA 464 (530)
Q Consensus 430 --~~-~---~----~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~ 464 (530)
.. . + ..-++..+...+.|++.=|+..++..+-...
T Consensus 209 ~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~~~ 253 (307)
T PF04118_consen 209 SLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLSHF 253 (307)
T ss_pred ccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHHhC
Confidence 00 0 0 1336777888888888888888887765443
No 224
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.96 E-value=7.6 Score=42.67 Aligned_cols=213 Identities=11% Similarity=0.123 Sum_probs=119.7
Q ss_pred hcCCccchhHHHHhHhhhhcCCCChH---HHHHHHHHHHhhcC---CCChhHHHHHHHHHHHHHhhhcc---hhhHHHHH
Q 009632 134 AAGEWFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQ---DDMPMVRRSAASNLGKFAATVEP---AHLKTDIM 204 (530)
Q Consensus 134 ~~~~~~~~r~~~~~~l~~l~~~~~~~---~~~~l~~~l~~l~~---d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~ 204 (530)
...+..++|.....++-.+....++. -+..+.+.+-.... .....+-+.+..++.-+...+-+ ......++
T Consensus 851 ~s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~li 930 (1610)
T KOG1848|consen 851 NSSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLI 930 (1610)
T ss_pred hcCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHH
Confidence 34455667777777777776666653 24445554444332 22445555566666665554332 22233445
Q ss_pred HHHHHhhc-CCchhHHHHHHHHHHHHhhhcCc-----------------------------hhhhhccHHHHHHhcCCCC
Q 009632 205 SIFEDLTQ-DDQDSVRLLAVEGCAALGKLLEP-----------------------------QDCVAHILPVIVNFSQDKS 254 (530)
Q Consensus 205 ~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~~~-----------------------------~~~~~~~~~~l~~~~~d~~ 254 (530)
+.+..+.. ..+-.|-..|+..+-.++..+.. +..+=.++..+.+++.|+.
T Consensus 931 dtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~dsr 1010 (1610)
T KOG1848|consen 931 DTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCEDSR 1010 (1610)
T ss_pred HHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhccch
Confidence 54444432 22334555566555555544321 1223346777788899999
Q ss_pred HHHHHHHHHHHHHHHHHhCCccc----ccchHHHHHHhcC-------CC--cHHHH----HHHHHHHHHHHHhhCHH---
Q 009632 255 WRVRYMVANQLYELCEAVGPEPT----RMDLVPAYVRLLR-------DN--EAEVR----IAAAGKVTKFCRILNPE--- 314 (530)
Q Consensus 255 ~~vr~~~~~~l~~l~~~~~~~~~----~~~l~~~l~~~l~-------d~--~~~vr----~~a~~~l~~~~~~~~~~--- 314 (530)
..||..|++++-++....|.... ..-++.++..++. ++ ..+++ +...-.++.+++.+...
T Consensus 1011 ~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e~fk~ 1090 (1610)
T KOG1848|consen 1011 AEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSENFKL 1090 (1610)
T ss_pred HHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 99999999999988877665432 2234444444444 11 01221 12333444555443221
Q ss_pred --------HHHhhhhHhHhHhccCCcHHHHHHHHHHHHhh
Q 009632 315 --------LAIQHILPCVKELSSDSSQHVRSALASVIMGM 346 (530)
Q Consensus 315 --------~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l 346 (530)
...+.++..++.+..+.+..+..+++.++..+
T Consensus 1091 llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qel 1130 (1610)
T KOG1848|consen 1091 LLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQEL 1130 (1610)
T ss_pred HHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHH
Confidence 23467777888888888888888888777654
No 225
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=93.89 E-value=7.2 Score=38.41 Aligned_cols=71 Identities=14% Similarity=0.136 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhH--HHhhHHHHHHHH
Q 009632 333 QHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVEL 405 (530)
Q Consensus 333 ~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~ 405 (530)
-+|+..++.++..+... + +...+.+-|++...-+.++..++..++.++..++....... -.+.|+..|..+
T Consensus 290 ~~V~Aa~A~A~v~l~~l-P-~KLnPiIrpLMdSIK~Een~~LQ~rsA~slA~Li~~~~~rkp~PndKIvkNLc~f 362 (441)
T PF12054_consen 290 VRVLAAAASALVALGGL-P-KKLNPIIRPLMDSIKREENELLQQRSAESLARLIQLCVDRKPCPNDKIVKNLCTF 362 (441)
T ss_pred HHHHHHHHHHHHHhccC-C-CCccHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhhh
Confidence 35666666666555322 2 33455556666666677889999999999999987764211 124566666554
No 226
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=93.86 E-value=6.3 Score=37.71 Aligned_cols=225 Identities=16% Similarity=0.165 Sum_probs=123.5
Q ss_pred HHHHHH-hhcCCCChhHHHHHHHHHHHHHhhhcc-hhhHHHHHHH--HHHhhcCC-chhHHHHHHHHHHHHhhhc-Cchh
Q 009632 164 LRSIYT-QLCQDDMPMVRRSAASNLGKFAATVEP-AHLKTDIMSI--FEDLTQDD-QDSVRLLAVEGCAALGKLL-EPQD 237 (530)
Q Consensus 164 l~~~l~-~l~~d~~~~vR~~a~~~l~~l~~~~~~-~~~~~~l~~~--l~~~~~d~-~~~vr~~a~~~l~~l~~~~-~~~~ 237 (530)
..+.+. -++.|+ .+||.++...+..++..... ..+.+.=++. ..++..|. ++.=|+.|++.+..+.+.- |.+.
T Consensus 26 ~~~~i~~~lL~~~-~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~ 104 (371)
T PF14664_consen 26 FGERIQCMLLSDS-KEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKE 104 (371)
T ss_pred HHHHHHHHHCCCc-HHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCccc
Confidence 333343 345555 99999999999887764322 1111111122 22333343 4456889999999888773 3344
Q ss_pred hhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH---
Q 009632 238 CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--- 314 (530)
Q Consensus 238 ~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~--- 314 (530)
+...++..+....++.+.+.|..+.+++.+++-.-++-.....=+..+.+.+.|...++....+.++-.+...-...
T Consensus 105 ~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl 184 (371)
T PF14664_consen 105 IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRKYL 184 (371)
T ss_pred CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhhhh
Confidence 55668888888888888899999999998887553322222233455666666654455555555555444322111
Q ss_pred ---HHHhhhhHhHhHh----ccCCc--HHHHHHHHHHHHhhcccc-C-----HHHHHHhHHHHHHHhhcCCChHHHHHHH
Q 009632 315 ---LAIQHILPCVKEL----SSDSS--QHVRSALASVIMGMAPLL-G-----KDATIEQLLPIFLSLLKDEFPDVRLNII 379 (530)
Q Consensus 315 ---~~~~~l~~~l~~~----~~d~~--~~vr~~~~~~l~~l~~~~-~-----~~~~~~~l~~~l~~~l~d~~~~vr~~a~ 379 (530)
.-.+.++..+.+. .++.. .+.+ .+...+..+.+.. | ...+ .-+.-+...|.-+..++|...+
T Consensus 185 ~~~~dL~~l~apftd~~~~~~~~~~~~~~l~-~s~~ai~~~LrsW~GLl~l~~~~~--~~lksLv~~L~~p~~~ir~~Il 261 (371)
T PF14664_consen 185 RPGFDLESLLAPFTDFHYRKIKDDRELERLQ-ASAKAISTLLRSWPGLLYLSMNDF--RGLKSLVDSLRLPNPEIRKAIL 261 (371)
T ss_pred cCCccHHHHHHhhhhhhccccccchHHHHHH-HHHHHHHHHHhcCCceeeeecCCc--hHHHHHHHHHcCCCHHHHHHHH
Confidence 1123333333333 12221 1222 2223333322221 1 1111 3355577777888888999998
Q ss_pred HhhHHhhhhhchh
Q 009632 380 SKLDQVNQVIGID 392 (530)
Q Consensus 380 ~~l~~l~~~~~~~ 392 (530)
+.+-.+...-.+.
T Consensus 262 dll~dllrik~p~ 274 (371)
T PF14664_consen 262 DLLFDLLRIKPPS 274 (371)
T ss_pred HHHHHHHCCCCCC
Confidence 8887776644333
No 227
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=93.86 E-value=19 Score=43.06 Aligned_cols=246 Identities=16% Similarity=0.144 Sum_probs=135.0
Q ss_pred HHHHHhcChhHHHHHHHhhcHHHHHHhhCh--------Hhhhhcccccccc--ccCCchHHHHHHHHHHh-cccccCCCc
Q 009632 13 VLIDELKNDDIQLRLNSIRRLSTIARALGE--------ERTRKELIPFLSE--NNDDDDEVLLAMAEELG-VFIPYVGGV 81 (530)
Q Consensus 13 ~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~--------~~~~~~l~~~l~~--~~d~~~~vr~~~~~~l~-~~~~~~~~~ 81 (530)
.+...+...|...|..+...+..+..-... -+..+..+..+.. +.|.++.+|..+-..+. ++.+.+..
T Consensus 485 ~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~~~~~~~laQ- 563 (2341)
T KOG0891|consen 485 CVDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLNERFDAQLAQ- 563 (2341)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhccchhhhhcC-
Confidence 345666788888898887777665432211 0113344444433 56777777777766664 33232221
Q ss_pred cchhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHH--------hcCCccchhHHHHhHhhhhc
Q 009632 82 EHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRL--------AAGEWFTARVSACGLFHIAY 153 (530)
Q Consensus 82 ~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l--------~~~~~~~~r~~~~~~l~~l~ 153 (530)
+..+-.+.....|+.-.++..+...++.++...+. +++|.+... ..+....+.......+..+.
T Consensus 564 ---~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a-----~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i 635 (2341)
T KOG0891|consen 564 ---PDLLRLLFIALHDENFAIQELATVIIGRLSSYNPA-----YVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELI 635 (2341)
T ss_pred ---chhHHHHHHHhhhhhhhhHHhHHhhccccccccHH-----HHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHH
Confidence 22333345556677888888888888877765442 233333221 11111112222222222222
Q ss_pred CCCC---hHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc--hhhHHHHHHHHHHhhcCCc-hhHHHHHHHHHH
Q 009632 154 PSAP---DILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQ-DSVRLLAVEGCA 227 (530)
Q Consensus 154 ~~~~---~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~-~~vr~~a~~~l~ 227 (530)
.... ..+...++..+...+.|.+..+-+.+..+++.++...+. ..+.+.+++.+.+.+.|.. ..-|.++.++++
T Consensus 636 ~~~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~ 715 (2341)
T KOG0891|consen 636 ISSPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALG 715 (2341)
T ss_pred HHHHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhhchhHHHHHhh
Confidence 2111 123444555556667788889999999999999988774 2333467777777776653 456778888888
Q ss_pred HHhhhcCc----hhhhhccHHHHHHhc-CCCCHHHHHHHHHHHHH
Q 009632 228 ALGKLLEP----QDCVAHILPVIVNFS-QDKSWRVRYMVANQLYE 267 (530)
Q Consensus 228 ~l~~~~~~----~~~~~~~~~~l~~~~-~d~~~~vr~~~~~~l~~ 267 (530)
.+...-+- -...+.++..+.... .--...+|..+.+.++.
T Consensus 716 ~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~ 760 (2341)
T KOG0891|consen 716 QLESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGL 760 (2341)
T ss_pred hhhcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhh
Confidence 87764332 111233333333322 22334566666666653
No 228
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.81 E-value=9.3 Score=39.43 Aligned_cols=207 Identities=12% Similarity=0.154 Sum_probs=126.4
Q ss_pred hccccccccccCCchHHHHHHHHHHhcccccCCCccchhcchhHHHhhhccc-chHHHHHHHHHHHHHHhhcC--hhhhh
Q 009632 47 KELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVE-ETCVRDKAVESLCRIGSQMR--ESDLV 123 (530)
Q Consensus 47 ~~l~~~l~~~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~-~~~vR~~a~~~l~~l~~~~~--~~~~~ 123 (530)
+.++|-+..-.+..--+|+.+|..+|.++..--..+....+...+..+++|. |..||-.++.++...+..+. ++.+.
T Consensus 487 ~~llpEl~~~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFl 566 (978)
T KOG1993|consen 487 EALLPELANDHGNSRIIRRRVAWILGQWVSVQQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFL 566 (978)
T ss_pred HhhCHHhhhcccchhHHHHHHHHHHhhhhheechHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhh
Confidence 3555555532223345799999999988773222344556666778888887 88899999999999988653 44443
Q ss_pred hhH---HHHHHHHhcC-CccchhHHHHhHhhhhcCCCChHH---H---HHHHHHHHhhcCCCChhHHHHHHHHHHHHHhh
Q 009632 124 DWY---IPLVKRLAAG-EWFTARVSACGLFHIAYPSAPDIL---K---TELRSIYTQLCQDDMPMVRRSAASNLGKFAAT 193 (530)
Q Consensus 124 ~~l---~~~l~~l~~~-~~~~~r~~~~~~l~~l~~~~~~~~---~---~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~ 193 (530)
+++ .-.+..+.+. .....|......++.+..+.++.. . -+++|.+.+-.+ +++-.|-+.+..+.++...
T Consensus 567 p~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~-~e~lLr~alL~~L~~lV~a 645 (978)
T KOG1993|consen 567 PYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESE-EEPLLRCALLATLRNLVNA 645 (978)
T ss_pred hhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhc-cCcHHHHHHHHHHHHHHHH
Confidence 332 1222222232 345678888888888777666542 2 334455554433 6778999999999999988
Q ss_pred hcc--hhhHHHHHHHHHHhhcCCc-hh---HHHHHHHHHHHHhhhcCc-hhhhhccHHHHHHhcCCCCH
Q 009632 194 VEP--AHLKTDIMSIFEDLTQDDQ-DS---VRLLAVEGCAALGKLLEP-QDCVAHILPVIVNFSQDKSW 255 (530)
Q Consensus 194 ~~~--~~~~~~l~~~l~~~~~d~~-~~---vr~~a~~~l~~l~~~~~~-~~~~~~~~~~l~~~~~d~~~ 255 (530)
++. ....+.++|.+ ++..|.+ ++ .-+-+++.+..+....+. ..-.-.+.|.+...+.-...
T Consensus 646 lg~qS~~~~~fL~pVI-el~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll~L~p~l~~~iE~ste 713 (978)
T KOG1993|consen 646 LGAQSFEFYPFLYPVI-ELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPELLLLFPHLLYIIEQSTE 713 (978)
T ss_pred hccCCccchHHHHHHH-HHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHHHHHHHHHHHHHHhhhh
Confidence 886 34455566654 4455543 22 445677777777665433 11122355555555544333
No 229
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=93.72 E-value=7.4 Score=39.96 Aligned_cols=95 Identities=14% Similarity=0.103 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHHhChh--------HHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhh
Q 009632 434 DDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGPE--------WAMQHITPQVLEMINNPHYLYRMTILRAISLLAP 504 (530)
Q Consensus 434 ~~~~~~~l~~~l~-d~~~~Vr~~a~~~l~~l~~~~~~~--------~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~ 504 (530)
.+.++...+.++. .....+-++++.+|..+....+.. +.++..+|.+..++..++.+|...++.++.++..
T Consensus 516 ~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~ 595 (717)
T KOG1048|consen 516 HPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSR 595 (717)
T ss_pred cHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhcc
Confidence 3445555444443 466788899999998877544321 2347789999999999999999999999999987
Q ss_pred hcCh-HHHHhhHHHHHHhhccCCCC
Q 009632 505 VMGS-EITCSRLLPVVINASKDRYL 528 (530)
Q Consensus 505 ~~~~-~~~~~~~~p~l~~~l~D~~~ 528 (530)
..-. +.+..+.+|-|...+.+..+
T Consensus 596 d~rnk~ligk~a~~~lv~~Lp~~~~ 620 (717)
T KOG1048|consen 596 DIRNKELIGKYAIPDLVRCLPGSGP 620 (717)
T ss_pred CchhhhhhhcchHHHHHHhCcCCCC
Confidence 6653 45678899999999988876
No 230
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=93.72 E-value=2.7 Score=35.80 Aligned_cols=72 Identities=28% Similarity=0.239 Sum_probs=47.4
Q ss_pred HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC
Q 009632 395 SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG 468 (530)
Q Consensus 395 ~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~ 468 (530)
.+..++.+.+.+.+++..+|..|++.+..+.+. |-- -....+|.+..+..|+++.+|..|...+..+.+.++
T Consensus 6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~q-GLv-nP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~ 77 (187)
T PF12830_consen 6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQ-GLV-NPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHE 77 (187)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhc-CCC-ChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhH
Confidence 355666666777777777777777777766542 210 013467777777777777777777777777766654
No 231
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=93.59 E-value=7.3 Score=37.51 Aligned_cols=232 Identities=9% Similarity=-0.016 Sum_probs=125.0
Q ss_pred chHHHHHHHHHHHHHHh------hcChhhhhhhHHHHHHHHhcCCccchhH-HHHhHhhh--hcC-CCChHHHHHHHHHH
Q 009632 99 ETCVRDKAVESLCRIGS------QMRESDLVDWYIPLVKRLAAGEWFTARV-SACGLFHI--AYP-SAPDILKTELRSIY 168 (530)
Q Consensus 99 ~~~vR~~a~~~l~~l~~------~~~~~~~~~~l~~~l~~l~~~~~~~~r~-~~~~~l~~--l~~-~~~~~~~~~l~~~l 168 (530)
+..+-..|++.++.+.. .++.+.....+...+..+.+...+..-. ....++.. +.. .++.+....++..+
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l 138 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAAL 138 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHH
Confidence 56777788888887653 4444444433444444443333332222 22222221 111 12333445566666
Q ss_pred HhhcC-CCChhHHHHHHHHHHHHHhhhcchh--hHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhc-cHH
Q 009632 169 TQLCQ-DDMPMVRRSAASNLGKFAATVEPAH--LKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAH-ILP 244 (530)
Q Consensus 169 ~~l~~-d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~ 244 (530)
..+-+ -++..+-...+.++..+....+... ....-+|.+...+-+....+|..|......+...++++..... +.+
T Consensus 139 ~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~ 218 (372)
T PF12231_consen 139 HNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLE 218 (372)
T ss_pred HHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHH
Confidence 55554 4566777777788888877766522 2234566666666677888999988888888877776433222 222
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhH
Q 009632 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCV 324 (530)
Q Consensus 245 ~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l 324 (530)
.+.....+ . ......++.+..+...-+......+++..+..++.+.. +..-...+..+...
T Consensus 219 ~~~~~~~~-~-~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~-----------------~~~w~~~n~wL~v~ 279 (372)
T PF12231_consen 219 DLQRSLEN-G-KLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSR-----------------LDSWEHLNEWLKVP 279 (372)
T ss_pred Hhcccccc-c-cHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCch-----------------hhccHhHhHHHHHH
Confidence 22222222 2 45555555555555432222233456666666664431 01111224445555
Q ss_pred hHhccCCcHHHHHHHHHHHHhhccc
Q 009632 325 KELSSDSSQHVRSALASVIMGMAPL 349 (530)
Q Consensus 325 ~~~~~d~~~~vr~~~~~~l~~l~~~ 349 (530)
....+++++.+|..+..++..+...
T Consensus 280 e~cFn~~d~~~k~~A~~aW~~liy~ 304 (372)
T PF12231_consen 280 EKCFNSSDPQVKIQAFKAWRRLIYA 304 (372)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 5566777888888888887776653
No 232
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=93.56 E-value=1.6 Score=37.36 Aligned_cols=118 Identities=13% Similarity=0.070 Sum_probs=61.0
Q ss_pred HHhhhcccchHHHHHHHHHHHHHHhhcChh--hhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChHHHHHHHHHH
Q 009632 91 LETLCTVEETCVRDKAVESLCRIGSQMRES--DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIY 168 (530)
Q Consensus 91 l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l 168 (530)
+..+++-.....-...+..++.+...++.. .....++..+..+-.+++...|..+-.+++.....+|++..=.++|.-
T Consensus 5 ~e~~L~~~y~~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~~lPLn 84 (198)
T PF08161_consen 5 LESLLSYRYQHAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLSILPLN 84 (198)
T ss_pred HHHHhCcchHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHHHCCCC
Confidence 333443333444444455555555544432 112223444455556666778888888888888888887665666644
Q ss_pred HhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHH
Q 009632 169 TQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFED 209 (530)
Q Consensus 169 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~ 209 (530)
... .+....-|...+-.|........=..+.++++|....
T Consensus 85 l~~-~~~~~~~raWLLPlLr~~i~~~~L~fF~~~~lPla~~ 124 (198)
T PF08161_consen 85 LDN-ADDSQPGRAWLLPLLRDHIRNASLSFFVEEFLPLARR 124 (198)
T ss_pred ccC-CCcCCcccchhHHHHHHhccCCChHHHHHHHHHHHHH
Confidence 332 2223333444443443333322224556667775543
No 233
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.54 E-value=12 Score=39.68 Aligned_cols=92 Identities=23% Similarity=0.234 Sum_probs=68.5
Q ss_pred hhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCH--HH---HHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch-
Q 009632 318 QHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK--DA---TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI- 391 (530)
Q Consensus 318 ~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~- 391 (530)
..++..-..++.+++-++|..++..+......+.. +. .....+|.++..+.++++-+-..|++++..++...|.
T Consensus 802 ~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDF 881 (1014)
T KOG4524|consen 802 LKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDF 881 (1014)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhH
Confidence 44555556778889999999999888765444321 22 2457799999999999999999999999999887764
Q ss_pred --hHHHhhHHHHHHHHhcCC
Q 009632 392 --DLLSQSLLPAIVELAEDR 409 (530)
Q Consensus 392 --~~~~~~l~~~l~~~~~~~ 409 (530)
..+.+.++|.+..++++.
T Consensus 882 v~sR~l~dvlP~l~~~~~~~ 901 (1014)
T KOG4524|consen 882 VASRFLEDVLPWLKHLCQDS 901 (1014)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 234567888887776654
No 234
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.46 E-value=5.8 Score=35.95 Aligned_cols=58 Identities=17% Similarity=0.111 Sum_probs=39.5
Q ss_pred CCcHHHHHHHHHHHHHHHHHh-ChhHHh-hhhHHHHHhhc-cCCChHHHHHHHHHHHHHhh
Q 009632 447 DKVYSIRDAAANNLKRLAEEF-GPEWAM-QHITPQVLEMI-NNPHYLYRMTILRAISLLAP 504 (530)
Q Consensus 447 d~~~~Vr~~a~~~l~~l~~~~-~~~~~~-~~i~~~l~~~~-~d~~~~vr~~a~~~l~~i~~ 504 (530)
++++.+|...++++-.++..- |.+... ..+.|.+..+- ..++.++|..+.+....+..
T Consensus 255 epdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 255 EPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVR 315 (353)
T ss_pred CCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence 688899999999998887654 444332 45666666543 44677888876666665554
No 235
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=93.41 E-value=2.1 Score=34.76 Aligned_cols=47 Identities=15% Similarity=0.206 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHhChhHHh-hhhHHHHHhhccCCChHHHHHHHHH
Q 009632 450 YSIRDAAANNLKRLAEEFGPEWAM-QHITPQVLEMINNPHYLYRMTILRA 498 (530)
Q Consensus 450 ~~Vr~~a~~~l~~l~~~~~~~~~~-~~i~~~l~~~~~d~~~~vr~~a~~~ 498 (530)
..+...++++++............ ..+++.+.+.+++++. |..|+++
T Consensus 100 ~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~~~--~~~A~~c 147 (148)
T PF08389_consen 100 EELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSPEL--REAAAEC 147 (148)
T ss_dssp HHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSCCC--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCHHH--HHHHHHh
Confidence 455666666666655544333222 3356666665544443 4555544
No 236
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=93.32 E-value=1.7 Score=37.09 Aligned_cols=72 Identities=17% Similarity=0.046 Sum_probs=56.3
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcC
Q 009632 161 KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLE 234 (530)
Q Consensus 161 ~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~ 234 (530)
.+..++.+++++.+++..+|..|++.+..+.+.- -......+|.+..+..|+++.+|..|...+..+.+..+
T Consensus 6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qG--LvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~ 77 (187)
T PF12830_consen 6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQG--LVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHE 77 (187)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcC--CCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhH
Confidence 3455666777888999999999999998887631 11124688999999999999999999999988876654
No 237
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=93.32 E-value=0.61 Score=35.74 Aligned_cols=69 Identities=13% Similarity=0.094 Sum_probs=43.5
Q ss_pred hHHHHHHHHhcC-CChHHHHHHHHHHHHHHhhhChhh--HH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 009632 397 SLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGF--FD-DKLGALCMQWLQDKVYSIRDAAANNLKRLAE 465 (530)
Q Consensus 397 ~l~~~l~~~~~~-~~~~~R~~~~~~l~~l~~~~~~~~--~~-~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~ 465 (530)
.++..|.+++.. .+..+-..|+.=++.++...+... .. -.....+++++.+++++||..|+.++..+..
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 455556666533 356666677777777777664322 21 2356677888888888888888888877654
No 238
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=93.24 E-value=6.9 Score=36.19 Aligned_cols=165 Identities=15% Similarity=0.113 Sum_probs=117.0
Q ss_pred hHHHHHHHHHHHHhhhcCchhhhhc---cHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcc--cccchHHHHHHhcCC
Q 009632 217 SVRLLAVEGCAALGKLLEPQDCVAH---ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRD 291 (530)
Q Consensus 217 ~vr~~a~~~l~~l~~~~~~~~~~~~---~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d 291 (530)
-|...|++....+.+.+|++.+... ..|-+..++...+-.||-.....+....-.+|... ....++..++..++|
T Consensus 70 GVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLed 149 (307)
T PF04118_consen 70 GVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLED 149 (307)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccccc
Confidence 4888899999999999888654332 44555666666777899988888877665555521 123455556667788
Q ss_pred CcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccC-------HHH---H----HH
Q 009632 292 NEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG-------KDA---T----IE 357 (530)
Q Consensus 292 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~-------~~~---~----~~ 357 (530)
+..++...+.+.+..+...+|.+.+.+.+.-.+. .++.+|..++..+..-..... .+. . ..
T Consensus 150 e~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii-----~sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 224 (307)
T PF04118_consen 150 EGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCII-----TSPSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDPG 224 (307)
T ss_pred CCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHh-----cCcchhHHHHHHHHHhCCcccccccccchHHHHHhcCCCcc
Confidence 8999999999999999999999877666665554 456788888887765443322 011 0 23
Q ss_pred hHHHHHHHhhcCCChHHHHHHHHhhHHhh
Q 009632 358 QLLPIFLSLLKDEFPDVRLNIISKLDQVN 386 (530)
Q Consensus 358 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 386 (530)
-++..+...++|++.-|+..+++.+-.-.
T Consensus 225 Llv~al~~~L~D~~iLVqR~~LDlLl~~~ 253 (307)
T PF04118_consen 225 LLVRALCACLEDENILVQRGFLDLLLSHF 253 (307)
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHhC
Confidence 45677788888988888888877765543
No 239
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=93.23 E-value=3.4 Score=38.72 Aligned_cols=140 Identities=11% Similarity=0.114 Sum_probs=68.0
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHhCCcccc--cchHHHHHHhcCC----CcHHHHHHHHHHHHHHHHhhCHH--HHHhhh
Q 009632 249 FSQDKSWRVRYMVANQLYELCEAVGPEPTR--MDLVPAYVRLLRD----NEAEVRIAAAGKVTKFCRILNPE--LAIQHI 320 (530)
Q Consensus 249 ~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~--~~l~~~l~~~l~d----~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l 320 (530)
+++.+++.+...++..+..+...-+..... ..+++.+++.+.+ ++.+++..++.++..+...-... .+....
T Consensus 113 ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~ 192 (312)
T PF03224_consen 113 LLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNG 192 (312)
T ss_dssp H-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCc
Confidence 556667777777777777776554433221 2445555555443 44556677777777776532211 222334
Q ss_pred hHhHhHhc-------cCCcHHHHHHHHHHHHhhccc--cCHHHHHHhHHHHHHHhhcCC-ChHHHHHHHHhhHHhhhh
Q 009632 321 LPCVKELS-------SDSSQHVRSALASVIMGMAPL--LGKDATIEQLLPIFLSLLKDE-FPDVRLNIISKLDQVNQV 388 (530)
Q Consensus 321 ~~~l~~~~-------~d~~~~vr~~~~~~l~~l~~~--~~~~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~ 388 (530)
++.+...+ ...+.++...++-++..+.-. .-.......++|.+...+++. .+.|-..++.++.+++..
T Consensus 193 v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~ 270 (312)
T PF03224_consen 193 VSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSK 270 (312)
T ss_dssp HHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhc
Confidence 44444444 123345556666555544311 111122234677777777654 345555666666666544
No 240
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=93.21 E-value=24 Score=42.27 Aligned_cols=250 Identities=16% Similarity=0.141 Sum_probs=144.1
Q ss_pred ccCCchHHHHHHHHHHhcccccCCC--------ccchhcchhHHHhh-hcccchHHHHHHHHHHHHHHhhcChhhhhhhH
Q 009632 56 NNDDDDEVLLAMAEELGVFIPYVGG--------VEHAHVLLPPLETL-CTVEETCVRDKAVESLCRIGSQMRESDLVDWY 126 (530)
Q Consensus 56 ~~d~~~~vr~~~~~~l~~~~~~~~~--------~~~~~~l~~~l~~l-~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l 126 (530)
+..+++++|..++..+..+...... -+....++..+..+ ..|.++.+|......+. +.+.+....+..
T Consensus 490 ~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~---~~~~~~laQ~~~ 566 (2341)
T KOG0891|consen 490 LEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN---ERFDAQLAQPDL 566 (2341)
T ss_pred HhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc---cchhhhhcCchh
Confidence 4567889999998777655443221 11234444444443 46778888887665555 332232333344
Q ss_pred HHHHHHHhcCCccchhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcC----CCChhHHHHHHHHHHHHHhhhcc--hhhH
Q 009632 127 IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQ----DDMPMVRRSAASNLGKFAATVEP--AHLK 200 (530)
Q Consensus 127 ~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~----d~~~~vR~~a~~~l~~l~~~~~~--~~~~ 200 (530)
+.......+++....+..+...++.++..-+....+.+....+...+ +....+...+..-+..+...... ..+.
T Consensus 567 lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i~~~v 646 (2341)
T KOG0891|consen 567 LRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVLISPYV 646 (2341)
T ss_pred HHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHHHHhhc
Confidence 55556666777777888888888777765544344444444444333 22233333333323222221111 1222
Q ss_pred HHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCch--hhhhccHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHhCC---
Q 009632 201 TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ--DCVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVGP--- 274 (530)
Q Consensus 201 ~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~--- 274 (530)
..++..+...+.|.+..+-..+..+++.++...|.+ .+.+.+++.+.+.+.|. +..-|.++.++++++.+.-|-
T Consensus 647 ~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~~~~v~ 726 (2341)
T KOG0891|consen 647 GPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLESSTGYVVD 726 (2341)
T ss_pred CchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhcccceEec
Confidence 334455566677888888899999999999988842 23345677777766664 455677888888888765432
Q ss_pred -cccccchHHHHHHhcC-CCcHHHHHHHHHHHHHHH
Q 009632 275 -EPTRMDLVPAYVRLLR-DNEAEVRIAAAGKVTKFC 308 (530)
Q Consensus 275 -~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~~~ 308 (530)
....+.++..+...+. .....+|.++++.++..+
T Consensus 727 p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g 762 (2341)
T KOG0891|consen 727 PYLDYPELLDILINILKTEQSSTIRREAIRLLGLLG 762 (2341)
T ss_pred ccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhc
Confidence 1123345555555444 334567888888777443
No 241
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=92.93 E-value=3 Score=33.67 Aligned_cols=106 Identities=8% Similarity=-0.012 Sum_probs=69.1
Q ss_pred CCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCch----hhhhccHHHHHH
Q 009632 173 QDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ----DCVAHILPVIVN 248 (530)
Q Consensus 173 ~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~~~~~l~~ 248 (530)
..++|..-...|..+..= +.-..+.+..+.+.+.+.++.|...|+..+..+.+.+|.. .-...++..+..
T Consensus 14 ~~~dw~~il~icD~I~~~------~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~k 87 (144)
T cd03568 14 TSENWGLILDVCDKVKSD------ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKK 87 (144)
T ss_pred CCcCHHHHHHHHHHHhcC------CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHH
Confidence 345665554444444321 1223456677777888888889999999999999988863 223346666666
Q ss_pred hcCC-CCHHHHHHHHHHHHHHHHHhCCcccccchHHH
Q 009632 249 FSQD-KSWRVRYMVANQLYELCEAVGPEPTRMDLVPA 284 (530)
Q Consensus 249 ~~~d-~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~ 284 (530)
++++ .+..|+..+...+...+..++.+.....+...
T Consensus 88 l~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~ 124 (144)
T cd03568 88 LINDRVHPTVKEKLREVVKQWADEFKNDPSLSLMSDL 124 (144)
T ss_pred HhcccCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHH
Confidence 6666 67788888888888888777654433333333
No 242
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=92.88 E-value=3.2 Score=33.18 Aligned_cols=98 Identities=12% Similarity=0.112 Sum_probs=70.3
Q ss_pred hcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHh----hhhHHHHH
Q 009632 406 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM----QHITPQVL 481 (530)
Q Consensus 406 ~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~----~~i~~~l~ 481 (530)
+.+++|..-...+..+.. +.-| ....+..+.+-+.++++.|...|+..+-.+++++|..+.. ..++..+.
T Consensus 14 l~~~dw~~ileicD~In~--~~~~----~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~ 87 (139)
T cd03567 14 NREEDWEAIQAFCEQINK--EPEG----PQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELI 87 (139)
T ss_pred CCCCCHHHHHHHHHHHHc--CCcc----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHH
Confidence 345678765555555532 1112 2345666777788999999999999999999999987543 56677777
Q ss_pred hhccC------CChHHHHHHHHHHHHHhhhcChH
Q 009632 482 EMINN------PHYLYRMTILRAISLLAPVMGSE 509 (530)
Q Consensus 482 ~~~~d------~~~~vr~~a~~~l~~i~~~~~~~ 509 (530)
+++.+ .+..||..++..+..+...++.+
T Consensus 88 kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~ 121 (139)
T cd03567 88 KLVSPKYLGSRTSEKVKTKIIELLYSWTLELPHE 121 (139)
T ss_pred HHhccccCCCCCCHHHHHHHHHHHHHHHHHhccc
Confidence 77753 46789999999999998887644
No 243
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=92.88 E-value=2.6 Score=36.15 Aligned_cols=73 Identities=15% Similarity=0.142 Sum_probs=38.6
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHhCCccc--ccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHH
Q 009632 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT--RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAI 317 (530)
Q Consensus 245 ~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~ 317 (530)
.+..+++-.....-..+...++.+...+|.... ...++..+-++-.+++...|..+-.+++...+.+|++.+.
T Consensus 4 ~~e~~L~~~y~~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL 78 (198)
T PF08161_consen 4 TLESLLSYRYQHAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVL 78 (198)
T ss_pred HHHHHhCcchHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHH
Confidence 344444434444555555666666666665421 1122222333334555566777777777777777776554
No 244
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.83 E-value=17 Score=40.69 Aligned_cols=112 Identities=12% Similarity=0.105 Sum_probs=62.1
Q ss_pred HHHHHHHHhhHHhhhhhchhHHHh-------h--HHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChh---hHHHHHHHH
Q 009632 373 DVRLNIISKLDQVNQVIGIDLLSQ-------S--LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGAL 440 (530)
Q Consensus 373 ~vr~~a~~~l~~l~~~~~~~~~~~-------~--l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~---~~~~~~~~~ 440 (530)
.|-..++.++..+....|.+.-.. . --..+.++.+++.+.+|.+..+.+..+.+....- .-.+.+.|.
T Consensus 201 Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~~~~~~~l~~~ 280 (1312)
T KOG0803|consen 201 RVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRVMESEKNYLKPV 280 (1312)
T ss_pred HHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhcchhhhhHhhHH
Confidence 344455555555555555432111 1 1223556778889999999999888887755432 123456676
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHh------hhhHHHHHhhcc
Q 009632 441 CMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM------QHITPQVLEMIN 485 (530)
Q Consensus 441 l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~------~~i~~~l~~~~~ 485 (530)
+.....+.+ -|.-...+.+......+...|.. ..+.|.+.++.+
T Consensus 281 ~~~~~~~~d-~~c~~~we~Vl~~~~~~p~~~~~~~~~~~k~il~~l~~~ir 330 (1312)
T KOG0803|consen 281 LLGSIDSLD-HVCSSMWEKVLLNLSSLPDEWLHLNSLLKKGILPLLSNLIR 330 (1312)
T ss_pred HHccccccc-cccHHHHHHHHHHhhhhhHHHhcccchhccchhHHHHHHHh
Confidence 666665554 44444455544444444444432 345666655554
No 245
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=92.80 E-value=2.4 Score=34.20 Aligned_cols=98 Identities=16% Similarity=0.214 Sum_probs=70.5
Q ss_pred hcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHh----hhhHHHHH
Q 009632 406 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM----QHITPQVL 481 (530)
Q Consensus 406 ~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~----~~i~~~l~ 481 (530)
+..++|..-...+..+..= ..| ....+..+.+-+.++++.|...|+..+..+++++|..+.. ..++..|.
T Consensus 13 l~~~dw~~il~icD~I~~~--~~~----~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~ 86 (144)
T cd03568 13 LTSENWGLILDVCDKVKSD--ENG----AKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELK 86 (144)
T ss_pred CCCcCHHHHHHHHHHHhcC--Ccc----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHH
Confidence 3456776555554444321 122 2345667777778888999999999999999999876543 56788888
Q ss_pred hhccC-CChHHHHHHHHHHHHHhhhcChH
Q 009632 482 EMINN-PHYLYRMTILRAISLLAPVMGSE 509 (530)
Q Consensus 482 ~~~~d-~~~~vr~~a~~~l~~i~~~~~~~ 509 (530)
+++++ .+..|+..++..+..+...++.+
T Consensus 87 kl~~~~~~~~Vk~kil~li~~W~~~f~~~ 115 (144)
T cd03568 87 KLINDRVHPTVKEKLREVVKQWADEFKND 115 (144)
T ss_pred HHhcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 88877 68889999999999998877643
No 246
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=92.77 E-value=9.3 Score=36.42 Aligned_cols=148 Identities=9% Similarity=0.041 Sum_probs=84.4
Q ss_pred HhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhh------chhHHHhhHHHHHHH-HhcCCChHHHHHHHHHHHHHHhhhC
Q 009632 357 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI------GIDLLSQSLLPAIVE-LAEDRHWRVRLAIIEYIPLLASQLG 429 (530)
Q Consensus 357 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~------~~~~~~~~l~~~l~~-~~~~~~~~~R~~~~~~l~~l~~~~~ 429 (530)
++++..+..++..++.+......-+++++...= -...+...++..+.+ -..|.+-+...+++.++..+.--..
T Consensus 314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~ 393 (604)
T KOG4500|consen 314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS 393 (604)
T ss_pred cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC
Confidence 458888999999999999988888888887531 112223334444433 3345677888888888887754332
Q ss_pred -hhhH-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCh---hH-HhhhhHHHHHhhccCCChH-HHHHHHHHHHHH
Q 009632 430 -VGFF-DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EW-AMQHITPQVLEMINNPHYL-YRMTILRAISLL 502 (530)
Q Consensus 430 -~~~~-~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~---~~-~~~~i~~~l~~~~~d~~~~-vr~~a~~~l~~i 502 (530)
+..+ ...+...++..++-..+.|....+.++.-+...... +. ...+++..+..-...+++. |--...+.+..+
T Consensus 394 nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~l 473 (604)
T KOG4500|consen 394 NKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGL 473 (604)
T ss_pred chhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHH
Confidence 2222 233445566666666677777666666555433210 00 0133455555555555544 433344444444
Q ss_pred hh
Q 009632 503 AP 504 (530)
Q Consensus 503 ~~ 504 (530)
++
T Consensus 474 Ik 475 (604)
T KOG4500|consen 474 IK 475 (604)
T ss_pred HH
Confidence 33
No 247
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=92.71 E-value=0.89 Score=34.87 Aligned_cols=68 Identities=15% Similarity=0.138 Sum_probs=49.8
Q ss_pred HHHHHHHHh-cCCcHHHHHHHHHHHHHHHHHhChh--HH-hhhhHHHHHhhccCCChHHHHHHHHHHHHHhh
Q 009632 437 LGALCMQWL-QDKVYSIRDAAANNLKRLAEEFGPE--WA-MQHITPQVLEMINNPHYLYRMTILRAISLLAP 504 (530)
Q Consensus 437 ~~~~l~~~l-~d~~~~Vr~~a~~~l~~l~~~~~~~--~~-~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~ 504 (530)
++..+.+++ ...++.+-..||.=+|.+++.++.- .. .-.....++++++++|.+||..|+.++..++.
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 566666666 3346677788999999999887432 21 24567788889999999999999999998764
No 248
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=92.65 E-value=0.55 Score=34.46 Aligned_cols=69 Identities=14% Similarity=0.044 Sum_probs=46.1
Q ss_pred CCChHHHHHHHHhhHHhhhhhchh--HHHhhHHHHHHHHhcCC--ChHHHHHHHHHHHHHHhhhChhhHHHHHHHHH
Q 009632 369 DEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDR--HWRVRLAIIEYIPLLASQLGVGFFDDKLGALC 441 (530)
Q Consensus 369 d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~~~--~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l 441 (530)
|+.+.+|..|++.++.++..++.. .+...+...+.+.+.|+ +...+..|+..+..+ |++.+...++|.+
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l----G~~~vr~~ilP~l 89 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL----GPEAVRALILPNL 89 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH----HHHHHHHhhccCc
Confidence 456778888888888888877743 34566777777766654 466777777777766 4555555555543
No 249
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.61 E-value=6.2 Score=43.88 Aligned_cols=200 Identities=13% Similarity=0.060 Sum_probs=129.6
Q ss_pred hhcccchHHHHHHHHHHHHHHhhcChhhhhh---hHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChH---HHHHHHHH
Q 009632 94 LCTVEETCVRDKAVESLCRIGSQMRESDLVD---WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI---LKTELRSI 167 (530)
Q Consensus 94 l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~---~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~---~~~~l~~~ 167 (530)
-+.-.|+..|..|...++++......+.... .....+..++.|++.++|......+..+...+.+. +.+.++|.
T Consensus 49 kL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~li~~ 128 (1312)
T KOG0803|consen 49 KLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKSLIPP 128 (1312)
T ss_pred HHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhh
Confidence 3345678889999988988888766544433 24455677778888899998888888887776654 66777787
Q ss_pred HHhhcCCCChhHHHHHHHHHHHHHhhhcc----hhhHHHHHHHHHHhh--------cC-----------CchhHHHHHHH
Q 009632 168 YTQLCQDDMPMVRRSAASNLGKFAATVEP----AHLKTDIMSIFEDLT--------QD-----------DQDSVRLLAVE 224 (530)
Q Consensus 168 l~~l~~d~~~~vR~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~--------~d-----------~~~~vr~~a~~ 224 (530)
..-...|.+..|-.+|-..+.....--.. ..+.+.+.++..+.+ .| ....|-..++.
T Consensus 129 wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k~~Rvi~ssLl 208 (1312)
T KOG0803|consen 129 WLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESKYQRVISSSLL 208 (1312)
T ss_pred hhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHhhHHHHHHHHH
Confidence 77777888888888887777765541111 112233444444331 11 12345566777
Q ss_pred HHHHHhhhcCchhhhhc---------cHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCc---ccccchHHHHHHhcCCC
Q 009632 225 GCAALGKLLEPQDCVAH---------ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE---PTRMDLVPAYVRLLRDN 292 (530)
Q Consensus 225 ~l~~l~~~~~~~~~~~~---------~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~ 292 (530)
++..+....+...-... --..+-.+.+++++.+|.+..+.+..+...+..- .....+-|.+.....+.
T Consensus 209 ~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~~~~~~~l~~~~~~~~~~~ 288 (1312)
T KOG0803|consen 209 LLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRVMESEKNYLKPVLLGSIDSL 288 (1312)
T ss_pred HHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhcchhhhhHhhHHHHcccccc
Confidence 88888777665322221 1233445678888899999988888877665432 11345667777777766
Q ss_pred c
Q 009632 293 E 293 (530)
Q Consensus 293 ~ 293 (530)
+
T Consensus 289 d 289 (1312)
T KOG0803|consen 289 D 289 (1312)
T ss_pred c
Confidence 5
No 250
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.52 E-value=1.5 Score=41.05 Aligned_cols=104 Identities=15% Similarity=0.070 Sum_probs=56.5
Q ss_pred hcCCchhHHHHHHHHHHHHhhhcCch--hhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcc---cccchHHHH
Q 009632 211 TQDDQDSVRLLAVEGCAALGKLLEPQ--DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP---TRMDLVPAY 285 (530)
Q Consensus 211 ~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~---~~~~l~~~l 285 (530)
+.+-+..||..|++.+..+....+.. .....+++.+..+..|.+..||....+.+..++...+++. ...-+++++
T Consensus 67 lkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~~~yi 146 (393)
T KOG2149|consen 67 LKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSLLMPYI 146 (393)
T ss_pred hcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHHHHHHH
Confidence 34445555555555555444442211 1122344555555556666666666666655554443332 122355666
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHhhCHH
Q 009632 286 VRLLRDNEAEVRIAAAGKVTKFCRILNPE 314 (530)
Q Consensus 286 ~~~l~d~~~~vr~~a~~~l~~~~~~~~~~ 314 (530)
...+.+-.+++|.-+++.+..+...+++.
T Consensus 147 ~~AMThit~~i~~dslkfL~~Ll~~~~p~ 175 (393)
T KOG2149|consen 147 SSAMTHITPEIQEDSLKFLSLLLERYPDT 175 (393)
T ss_pred HHHHhhccHHHHHhhHHHHHHHHHHcChH
Confidence 66667777777777777777777766654
No 251
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=92.28 E-value=9.9 Score=35.60 Aligned_cols=159 Identities=14% Similarity=0.108 Sum_probs=75.6
Q ss_pred HHHhhcCCChHHHHHHHHhhHHhhhhhchhHH--HhhHHHHHHHHhcC----CChHHHHHHHHHHHHHHhhhC--hhhHH
Q 009632 363 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL--SQSLLPAIVELAED----RHWRVRLAIIEYIPLLASQLG--VGFFD 434 (530)
Q Consensus 363 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~l~~~l~~~~~~----~~~~~R~~~~~~l~~l~~~~~--~~~~~ 434 (530)
+++.+..+++.+...++..+..+...-+.... .+.+++.+.+.+++ ++......++++++.+...-. ..++.
T Consensus 110 fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~ 189 (312)
T PF03224_consen 110 FLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK 189 (312)
T ss_dssp HHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh
Confidence 33466666777777777777777654332211 12344444444333 344455777777777754321 22333
Q ss_pred HHHHHHHHHHh-----cCCcH--HHHHHHHHHHHHHHHHhChh----HHhhhhHHHHHhhccCC-ChHHHHHHHHHHHHH
Q 009632 435 DKLGALCMQWL-----QDKVY--SIRDAAANNLKRLAEEFGPE----WAMQHITPQVLEMINNP-HYLYRMTILRAISLL 502 (530)
Q Consensus 435 ~~~~~~l~~~l-----~d~~~--~Vr~~a~~~l~~l~~~~~~~----~~~~~i~~~l~~~~~d~-~~~vr~~a~~~l~~i 502 (530)
...++.+...+ .+... ++.-.++-|+=. -.+.++ .....++|.+.+.+++. ...|--.++.++.++
T Consensus 190 ~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWl--LSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl 267 (312)
T PF03224_consen 190 SNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWL--LSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNL 267 (312)
T ss_dssp HHHHHHHHHHHH---------HHHHHHHHHHHHHH--HTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHT
T ss_pred cCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHH--HhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 55666666666 22222 233333333221 222222 22244788888776543 333444477788888
Q ss_pred hhhcCh----HHHHhhHHHHHHhhc
Q 009632 503 APVMGS----EITCSRLLPVVINAS 523 (530)
Q Consensus 503 ~~~~~~----~~~~~~~~p~l~~~l 523 (530)
+..... ..+...+.|.+..+.
T Consensus 268 ~~~~~~~~~~~mv~~~~l~~l~~L~ 292 (312)
T PF03224_consen 268 LSKAPKSNIELMVLCGLLKTLQNLS 292 (312)
T ss_dssp TSSSSTTHHHHHHHH-HHHHHHHHH
T ss_pred HhccHHHHHHHHHHccHHHHHHHHh
Confidence 776552 234555555555443
No 252
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=92.22 E-value=5.2 Score=32.23 Aligned_cols=97 Identities=14% Similarity=0.099 Sum_probs=71.1
Q ss_pred cCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHh----hhhHHHHHh
Q 009632 407 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM----QHITPQVLE 482 (530)
Q Consensus 407 ~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~----~~i~~~l~~ 482 (530)
.+++|..-...+..+.. ...+ ....+..+.+-+..+++.|...|+..+..+++.+|..+.. ..++..|.+
T Consensus 18 ~~~dw~~ileicD~In~--~~~~----~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~ 91 (142)
T cd03569 18 GEPDLASILEICDMIRS--KDVQ----PKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKD 91 (142)
T ss_pred CccCHHHHHHHHHHHhC--CCCC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHH
Confidence 45677655555554432 1112 3345667777788899999999999999999999876543 567788888
Q ss_pred hcc-CCChHHHHHHHHHHHHHhhhcChH
Q 009632 483 MIN-NPHYLYRMTILRAISLLAPVMGSE 509 (530)
Q Consensus 483 ~~~-d~~~~vr~~a~~~l~~i~~~~~~~ 509 (530)
++. ..+..||..++..+..+...++.+
T Consensus 92 l~~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (142)
T cd03569 92 LIKTTKNEEVRQKILELIQAWALAFRNK 119 (142)
T ss_pred HHcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 776 467889999999999999887654
No 253
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=92.09 E-value=23 Score=39.70 Aligned_cols=135 Identities=13% Similarity=0.122 Sum_probs=81.1
Q ss_pred CcHHHHHHHHHHHHhhccccCH--HHH--HHhHHHHHHHhhcCC----ChHHHHHHHHhhHHhhhhhch-hH---H--Hh
Q 009632 331 SSQHVRSALASVIMGMAPLLGK--DAT--IEQLLPIFLSLLKDE----FPDVRLNIISKLDQVNQVIGI-DL---L--SQ 396 (530)
Q Consensus 331 ~~~~vr~~~~~~l~~l~~~~~~--~~~--~~~l~~~l~~~l~d~----~~~vr~~a~~~l~~l~~~~~~-~~---~--~~ 396 (530)
.....-.+++.++..|+..+.. ..+ .+..+.++...|.-+ .-.+-+.+-..|.++...+.. +. + ..
T Consensus 450 ~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~ 529 (2195)
T KOG2122|consen 450 KKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRH 529 (2195)
T ss_pred cccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHh
Confidence 3334455566666666554431 111 334556666666533 223333333333333333221 11 1 13
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhh---HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 009632 397 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF---FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAE 465 (530)
Q Consensus 397 ~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~---~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~ 465 (530)
..+..|+..+++.+..+-..+|.+|.++......+. +...-++++.+++..++..+-..++.+|..+..
T Consensus 530 NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln 601 (2195)
T KOG2122|consen 530 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLN 601 (2195)
T ss_pred hHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhc
Confidence 467778888888888888899999998876544332 334568899999999998888888888887764
No 254
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=92.06 E-value=0.31 Score=29.33 Aligned_cols=30 Identities=17% Similarity=0.214 Sum_probs=20.2
Q ss_pred hhhHHHHHhhccCCChHHHHHHHHHHHHHh
Q 009632 474 QHITPQVLEMINNPHYLYRMTILRAISLLA 503 (530)
Q Consensus 474 ~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~ 503 (530)
...+|.|.+++.+++..+|..+++++++++
T Consensus 11 ~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 11 AGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp TTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 345667777777777777777777776654
No 255
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=91.91 E-value=4.7 Score=36.16 Aligned_cols=130 Identities=18% Similarity=0.246 Sum_probs=69.8
Q ss_pred hcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCC------ChHHHHHHHHHHHHHHhhhC--hhhHHHHHH
Q 009632 367 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR------HWRVRLAIIEYIPLLASQLG--VGFFDDKLG 438 (530)
Q Consensus 367 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~------~~~~R~~~~~~l~~l~~~~~--~~~~~~~~~ 438 (530)
+...+...|.+|+.++.+= -| ..+++|.+..++++. +-..-...++....+.+.-. .+.+...++
T Consensus 207 ~dEs~~~~r~aAl~sLr~d---sG----lhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~hqlm 279 (450)
T COG5095 207 LDESDEQTRDAALESLRND---SG----LHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFVDPYLHQLM 279 (450)
T ss_pred HHHHHHHHHHHHHHHhccC---cc----HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceeecHHHHHHH
Confidence 4445667788877766542 11 245566555554432 22333334444444433111 223456678
Q ss_pred HHHHHHh------cC----CcHHHHHHHHHHHHHHHHHhChhHH--hhhhHHHHHhhccCC--ChHHHHHHHHHHHHHh
Q 009632 439 ALCMQWL------QD----KVYSIRDAAANNLKRLAEEFGPEWA--MQHITPQVLEMINNP--HYLYRMTILRAISLLA 503 (530)
Q Consensus 439 ~~l~~~l------~d----~~~~Vr~~a~~~l~~l~~~~~~~~~--~~~i~~~l~~~~~d~--~~~vr~~a~~~l~~i~ 503 (530)
|.++.++ ++ ....+|.-|+..++..+..++.... ...+...+.+.+-|. -+...-+|+..+..+.
T Consensus 280 PSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~YGalkgls~l~ 358 (450)
T COG5095 280 PSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQYGALKGLSILS 358 (450)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchhhhhhhhhhhhc
Confidence 8777765 12 2236999999999999998876532 234444444444343 3344555555555443
No 256
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=91.71 E-value=0.76 Score=37.84 Aligned_cols=128 Identities=13% Similarity=0.017 Sum_probs=61.6
Q ss_pred ccchhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc---hhh-HHHHHHHHHHhhc-
Q 009632 138 WFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHL-KTDIMSIFEDLTQ- 212 (530)
Q Consensus 138 ~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~-~~~l~~~l~~~~~- 212 (530)
...+|..+.-++..+.+..++...+.+.+++...+.+.+..-...++.++..+....+. ..+ .+.+.+.+..++.
T Consensus 18 ~~~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~ 97 (157)
T PF11701_consen 18 PEEVRSHALVILSKLLDAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASR 97 (157)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-
T ss_pred CHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhc
Confidence 44567766666666542222234455555555565555444444555555555443222 111 2345555555555
Q ss_pred -CCchhHHHHHHHHHHHHhhhcCc-hhhhhccHHHHHHhcC-CCCHH-HHHHHHHHH
Q 009632 213 -DDQDSVRLLAVEGCAALGKLLEP-QDCVAHILPVIVNFSQ-DKSWR-VRYMVANQL 265 (530)
Q Consensus 213 -d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~~~~l~~~~~-d~~~~-vr~~~~~~l 265 (530)
.++..+...+++.+..-+..-.- ..+..+..+.+....+ +++.. +|..++-.|
T Consensus 98 ~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L 154 (157)
T PF11701_consen 98 KSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGL 154 (157)
T ss_dssp CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHH
Confidence 44555666666666543321110 2234456666666664 33333 455444443
No 257
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=91.67 E-value=0.41 Score=29.02 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHH
Q 009632 435 DKLGALCMQWLQDKVYSIRDAAANN 459 (530)
Q Consensus 435 ~~~~~~l~~~l~d~~~~Vr~~a~~~ 459 (530)
+.+...+...+.|+.+.||++|+..
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHH
Confidence 4566666777777777777777654
No 258
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.55 E-value=20 Score=39.72 Aligned_cols=216 Identities=16% Similarity=0.117 Sum_probs=127.8
Q ss_pred hcccchHHHHHHHHHHHHHHhhcChhhh--hhhHHHHHHHHhcCCc----cchhH--HHHhHhh-hhcCCCChHHHHHHH
Q 009632 95 CTVEETCVRDKAVESLCRIGSQMRESDL--VDWYIPLVKRLAAGEW----FTARV--SACGLFH-IAYPSAPDILKTELR 165 (530)
Q Consensus 95 ~~d~~~~vR~~a~~~l~~l~~~~~~~~~--~~~l~~~l~~l~~~~~----~~~r~--~~~~~l~-~l~~~~~~~~~~~l~ 165 (530)
...+..+||....+++-.+.+..+.... +..+...+..+..... .-+|. .+.+++. .....++.+....++
T Consensus 851 ~s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~li 930 (1610)
T KOG1848|consen 851 NSSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLI 930 (1610)
T ss_pred hcCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHH
Confidence 4566788999999999999988776332 4456666655543332 11222 2333332 234456666777777
Q ss_pred HHHHhhcC-CCChhHHHHHHHHH---HHHHhh----hc----------------------chhhHHHHHHHHHHhhcCCc
Q 009632 166 SIYTQLCQ-DDMPMVRRSAASNL---GKFAAT----VE----------------------PAHLKTDIMSIFEDLTQDDQ 215 (530)
Q Consensus 166 ~~l~~l~~-d~~~~vR~~a~~~l---~~l~~~----~~----------------------~~~~~~~l~~~l~~~~~d~~ 215 (530)
..+...+. ..+-++--.|+..+ +.+... .+ ++..+-.++..+.+++.|+.
T Consensus 931 dtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~dsr 1010 (1610)
T KOG1848|consen 931 DTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCEDSR 1010 (1610)
T ss_pred HHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhccch
Confidence 77766553 22333333333222 222221 00 12233446667778889999
Q ss_pred hhHHHHHHHHHHHHhhhc----Cc----hhhhhccHHHHHHhcC--CCCHH-------HHHHHHHHHHHHHHHhCCcc--
Q 009632 216 DSVRLLAVEGCAALGKLL----EP----QDCVAHILPVIVNFSQ--DKSWR-------VRYMVANQLYELCEAVGPEP-- 276 (530)
Q Consensus 216 ~~vr~~a~~~l~~l~~~~----~~----~~~~~~~~~~l~~~~~--d~~~~-------vr~~~~~~l~~l~~~~~~~~-- 276 (530)
.+||..|++++-.+...- ++ ..++..++|.+...-. -++|. --+..+-+|+.+++.+....
T Consensus 1011 ~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e~fk~ 1090 (1610)
T KOG1848|consen 1011 AEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSENFKL 1090 (1610)
T ss_pred HHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 999999999998887643 33 2345566676652110 01121 12356667777777654321
Q ss_pred ---------cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHh
Q 009632 277 ---------TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI 310 (530)
Q Consensus 277 ---------~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 310 (530)
.-+.++.++.++..+.++++..++++++..+...
T Consensus 1091 llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~s 1133 (1610)
T KOG1848|consen 1091 LLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFS 1133 (1610)
T ss_pred HHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHH
Confidence 1245777777888899999999999999877653
No 259
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=91.37 E-value=0.54 Score=28.29 Aligned_cols=29 Identities=24% Similarity=0.088 Sum_probs=20.4
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Q 009632 436 KLGALCMQWLQDKVYSIRDAAANNLKRLA 464 (530)
Q Consensus 436 ~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~ 464 (530)
..+|.+.+++++++..|++.|+.+++.++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 35677777777777777777777777664
No 260
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.28 E-value=16 Score=36.09 Aligned_cols=335 Identities=15% Similarity=0.102 Sum_probs=179.1
Q ss_pred HHHHHHhhcCCC---ChhHHHHHHHHHHHHHh--hhcchhhHH--HHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc-
Q 009632 164 LRSIYTQLCQDD---MPMVRRSAASNLGKFAA--TVEPAHLKT--DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP- 235 (530)
Q Consensus 164 l~~~l~~l~~d~---~~~vR~~a~~~l~~l~~--~~~~~~~~~--~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~- 235 (530)
++..+..+++++ +..+-..+..+++.... .++++.+.. .++......+++ +..-..|.+++..+....-.
T Consensus 154 ~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~~~d~v~a~~pLi~l~F~sl~~--~~lhe~At~cic~ll~~~~~~ 231 (559)
T KOG2081|consen 154 VLVFLSDLLERSDLKSSDDLEQVLRCLGSWLRLHVFPPDQVLASFPLITLAFRSLSD--DELHEEATECICALLYCSLDR 231 (559)
T ss_pred HHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhhccCCHHHHHhhhHHHHHHHHHccc--chhhHHHHHHHHHHHHHhhhh
Confidence 444444554433 24455566666666554 333333222 244555555553 34555566655555443211
Q ss_pred hh---h------hhccHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHhCCccc--ccc---hHHHHHHhcCCCcHHHHHHH
Q 009632 236 QD---C------VAHILPVIVNF-SQDKSWRVRYMVANQLYELCEAVGPEPT--RMD---LVPAYVRLLRDNEAEVRIAA 300 (530)
Q Consensus 236 ~~---~------~~~~~~~l~~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~--~~~---l~~~l~~~l~d~~~~vr~~a 300 (530)
+. + ...++|...+. ....+..-+.+.+..+..+++.+-.... .+. ++..++-....++.+|-+..
T Consensus 232 ~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~~h~~~evie~S 311 (559)
T KOG2081|consen 232 SEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVAGHNDTEVIEAS 311 (559)
T ss_pred hccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhccCCchhhhhhh
Confidence 11 1 11233333332 2345566777888888888776421110 123 33334444466667777666
Q ss_pred HHHHHHHHHhh---CHHHHHhhhhHhHhHhc-------c------------CCcHHHHHHHHHHHHhhccccCHHHHHHh
Q 009632 301 AGKVTKFCRIL---NPELAIQHILPCVKELS-------S------------DSSQHVRSALASVIMGMAPLLGKDATIEQ 358 (530)
Q Consensus 301 ~~~l~~~~~~~---~~~~~~~~l~~~l~~~~-------~------------d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ 358 (530)
....-.+.+.. ..+.....+-|++.+++ + +.-.+.|..+...+...+...|.+.-.+.
T Consensus 312 F~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~e~lk~ 391 (559)
T KOG2081|consen 312 FNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFIIGSDECLKQ 391 (559)
T ss_pred HHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCccccCccchhHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 65554444432 11222222333333221 1 11236788888888887777776554443
Q ss_pred HHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCC--ChHHHHHHHHHHHHHHhhhChhh-HHH
Q 009632 359 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR--HWRVRLAIIEYIPLLASQLGVGF-FDD 435 (530)
Q Consensus 359 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~--~~~~R~~~~~~l~~l~~~~~~~~-~~~ 435 (530)
+.-.+.. +..+|+.-++++-.+..+.+.+.++. ..++|.+.+.+-+- ...+|.+++..++.+.+-+.... +.+
T Consensus 392 ~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~e--~~i~pevl~~i~nlp~Q~~~~~ts~ll~g~~~ew~~~~p~~le 467 (559)
T KOG2081|consen 392 MYIRLKE--NNASWEEVEAALFILRAVAKNVSPEE--NTIMPEVLKLICNLPEQAPLRYTSILLLGEYSEWVEQHPELLE 467 (559)
T ss_pred HHHHHcc--CCCchHHHHHHHHHHHHHhccCCccc--cchHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhCcHHHH
Confidence 3222222 36689999999999999998887654 45667666654432 34599999999999988765433 334
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHh-----hhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcChH
Q 009632 436 KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM-----QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE 509 (530)
Q Consensus 436 ~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~-----~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~~ 509 (530)
-+..++...+.++. .-..+..++..++..+...... ..++-.+..... +.+... .++.++.++..++..
T Consensus 468 ~v~~~~~~~~~~~~--~as~~a~~~~~i~~~c~~~~~~l~~~~~~l~~~l~~~~~--~~e~a~-l~~~~s~i~~~lp~~ 541 (559)
T KOG2081|consen 468 PVLRYIRQGLQLKR--LASAAALAFHRICSACRVQMTCLIPSLLELIRSLDSTQI--NEEAAC-LLQGISLIISNLPAH 541 (559)
T ss_pred HHHHHHHHHhhhcc--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhc--cHHHHH-HHHHHHHHHhcCCHh
Confidence 45666666666655 5555666666666554322110 112222222222 233333 677777777777654
No 261
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=91.21 E-value=14 Score=35.16 Aligned_cols=69 Identities=16% Similarity=0.127 Sum_probs=52.1
Q ss_pred HHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHhChhHH---hhhhHHHHHhhccCCChHHHHHHHHHHHHHhh
Q 009632 436 KLGALCMQWLQDKV-YSIRDAAANNLKRLAEEFGPEWA---MQHITPQVLEMINNPHYLYRMTILRAISLLAP 504 (530)
Q Consensus 436 ~~~~~l~~~l~d~~-~~Vr~~a~~~l~~l~~~~~~~~~---~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~ 504 (530)
.++..+.+++..++ +.+-..||.=+|+.++.++.... +-.....++++++++|.+||-+|+.|+..++.
T Consensus 366 ellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 366 ELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 36777777776544 67778889999999988753311 13346678889999999999999999988764
No 262
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=91.06 E-value=5.7 Score=31.97 Aligned_cols=73 Identities=12% Similarity=0.134 Sum_probs=44.8
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhh----HHHHHHHHHHhhcCCc--hh--HHHHHHHHHHHHhhhc
Q 009632 162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHL----KTDIMSIFEDLTQDDQ--DS--VRLLAVEGCAALGKLL 233 (530)
Q Consensus 162 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~----~~~l~~~l~~~~~d~~--~~--vr~~a~~~l~~l~~~~ 233 (530)
.+....+.+-+...++.+...|+..+..+.+++|.... ...++..+..++.+.. +. ||..+++.+...+..+
T Consensus 41 kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 41 KEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 44555555666667788888888888888777765322 2335555555554332 12 6777777776666665
Q ss_pred C
Q 009632 234 E 234 (530)
Q Consensus 234 ~ 234 (530)
+
T Consensus 121 ~ 121 (140)
T PF00790_consen 121 K 121 (140)
T ss_dssp T
T ss_pred C
Confidence 3
No 263
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=90.95 E-value=5.2 Score=31.85 Aligned_cols=96 Identities=15% Similarity=0.168 Sum_probs=68.6
Q ss_pred cCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHh----hhhHHHHHh
Q 009632 407 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM----QHITPQVLE 482 (530)
Q Consensus 407 ~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~----~~i~~~l~~ 482 (530)
.+++|..-...+..+..- +.-....+..+.+-+..+++.|...|+..+..+...+|..+.. .+++..+.+
T Consensus 14 ~~~D~~~il~icd~I~~~------~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~ 87 (133)
T cd03561 14 EEPDWALNLELCDLINLK------PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVK 87 (133)
T ss_pred CCccHHHHHHHHHHHhCC------CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHH
Confidence 456676555544444322 1112345667778888899999999999999999999876543 355666777
Q ss_pred hccC---CChHHHHHHHHHHHHHhhhcCh
Q 009632 483 MINN---PHYLYRMTILRAISLLAPVMGS 508 (530)
Q Consensus 483 ~~~d---~~~~vr~~a~~~l~~i~~~~~~ 508 (530)
++.. .+..||..++..+..+...++.
T Consensus 88 l~~~~~~~~~~Vk~kil~ll~~W~~~f~~ 116 (133)
T cd03561 88 IAKNSPKYDPKVREKALELILAWSESFGG 116 (133)
T ss_pred HhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 7765 4778999999999999888765
No 264
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=90.94 E-value=21 Score=36.87 Aligned_cols=106 Identities=19% Similarity=0.228 Sum_probs=67.6
Q ss_pred CcHHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhcc-----cccccc-ccCCchHHHHHHHHHHhcccccCCC-c
Q 009632 9 YPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKEL-----IPFLSE-NNDDDDEVLLAMAEELGVFIPYVGG-V 81 (530)
Q Consensus 9 ~~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l-----~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~-~ 81 (530)
..+...+..+.++++..-.+|...+..++. +.++....+ +|.+.. +...+.+|++.++.+|.+++-.-.+ .
T Consensus 233 ~~lpe~i~mL~~q~~~~qsnaaaylQHlcf--gd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~ 310 (717)
T KOG1048|consen 233 PTLPEVISMLMSQDPSVQSNAAAYLQHLCF--GDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDS 310 (717)
T ss_pred cccHHHHHHHhccChhhhHHHHHHHHHHHh--hhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcc
Confidence 346677788889999998888888888754 333333322 333444 5568999999999999988653222 1
Q ss_pred cch--hc--chhHHHhhh-cccchHHHHHHHHHHHHHHhh
Q 009632 82 EHA--HV--LLPPLETLC-TVEETCVRDKAVESLCRIGSQ 116 (530)
Q Consensus 82 ~~~--~~--l~~~l~~l~-~d~~~~vR~~a~~~l~~l~~~ 116 (530)
+.. .. =++.+.+++ ...|.+||+.....|-++.+.
T Consensus 311 NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~ 350 (717)
T KOG1048|consen 311 NKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN 350 (717)
T ss_pred cchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch
Confidence 211 11 123444444 346888999888666666554
No 265
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=90.91 E-value=19 Score=36.22 Aligned_cols=155 Identities=11% Similarity=0.123 Sum_probs=95.4
Q ss_pred hhhhhhHHHHHHHHhcCCccch--hHHHHhHhhhhcCCCChHH-HHH---HHHHHHhhcC-----CCChhHHHHHHHHHH
Q 009632 120 SDLVDWYIPLVKRLAAGEWFTA--RVSACGLFHIAYPSAPDIL-KTE---LRSIYTQLCQ-----DDMPMVRRSAASNLG 188 (530)
Q Consensus 120 ~~~~~~l~~~l~~l~~~~~~~~--r~~~~~~l~~l~~~~~~~~-~~~---l~~~l~~l~~-----d~~~~vR~~a~~~l~ 188 (530)
.+.+.+....+.+...+..|.. --..|.++|.+...+++.. +.- ++.-++.+|. |.-.-|.......+|
T Consensus 476 ~Dte~~mi~Klarq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMyvvG 555 (1053)
T COG5101 476 DDTEKYMIGKLARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMYVVG 555 (1053)
T ss_pred hhHHHHHHHHHHHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecceeeeec
Confidence 4455666666666666664444 3367888888888877752 222 3333334443 333333333333333
Q ss_pred HHHhhhcc-hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc----------hhhhhccHHHHHHhcCCCCHHH
Q 009632 189 KFAATVEP-AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP----------QDCVAHILPVIVNFSQDKSWRV 257 (530)
Q Consensus 189 ~l~~~~~~-~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~----------~~~~~~~~~~l~~~~~d~~~~v 257 (530)
.+-..+.. -.+...++..+.+++....+-|+..|..++..+++.++- +.+..+++.-+.....|-.+.-
T Consensus 556 QYpRFLkahw~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~dL~pqQ 635 (1053)
T COG5101 556 QYPRFLKAHWSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTGDLEPQQ 635 (1053)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcccCChHH
Confidence 33322211 234555667777788777788999999999999887753 3344555555566667878888
Q ss_pred HHHHHHHHHHHHHHhCC
Q 009632 258 RYMVANQLYELCEAVGP 274 (530)
Q Consensus 258 r~~~~~~l~~l~~~~~~ 274 (530)
.....++++-+.+..++
T Consensus 636 ~htfYeAcg~vIse~p~ 652 (1053)
T COG5101 636 KHTFYEACGMVISEVPK 652 (1053)
T ss_pred HhHHHHHHhHHHhccch
Confidence 88888888888776554
No 266
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=90.89 E-value=20 Score=36.33 Aligned_cols=86 Identities=24% Similarity=0.354 Sum_probs=55.8
Q ss_pred HHhhccccCHHHHHHhHHHHHHHhh-cCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHH----HhcCCChHHHHHH
Q 009632 343 IMGMAPLLGKDATIEQLLPIFLSLL-KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVE----LAEDRHWRVRLAI 417 (530)
Q Consensus 343 l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~----~~~~~~~~~R~~~ 417 (530)
++.+.+.+.+.. ..+++-.+..++ ..+...+|.++++.++.+++...++...+.+.|.+.. ++.|++|-++..|
T Consensus 465 ~~~~~~~l~~~~-i~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~A 543 (559)
T PF14868_consen 465 LSFFIQLLDPQL-IEQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHA 543 (559)
T ss_pred HHHHHHhcChHH-HHHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHH
Confidence 333333333333 334444455555 3445558888888888888877766655566666544 4688889999999
Q ss_pred HHHHHHHHhhhC
Q 009632 418 IEYIPLLASQLG 429 (530)
Q Consensus 418 ~~~l~~l~~~~~ 429 (530)
+++++.++....
T Consensus 544 LeAF~~FAe~T~ 555 (559)
T PF14868_consen 544 LEAFGQFAERTS 555 (559)
T ss_pred HHHHHHHhccCC
Confidence 998888886543
No 267
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=90.84 E-value=7.5 Score=31.41 Aligned_cols=140 Identities=19% Similarity=0.204 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhcc-CCcHH
Q 009632 256 RVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS-DSSQH 334 (530)
Q Consensus 256 ~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-d~~~~ 334 (530)
.+|...+.++..++....++.. +.+++.+.+.+..+ +.-....+..|..+.+.+.. ..+ +....
T Consensus 3 ~i~~kl~~~l~~i~~~~~P~~W-p~~l~~l~~~~~~~-~~~~~~~L~iL~~l~eEi~~-------------~~~~~~~~~ 67 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDWPQQW-PDFLEDLLQLLQSS-PQHLELVLRILRILPEEITD-------------FRRSSLSQE 67 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTS-TTHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHT-------------SHCCHSHHH
T ss_pred hHHHHHHHHHHHHHHHHChhhC-chHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHh-------------hhchhhhHH
Confidence 4677788888888877654443 35677777777663 44555555555555543211 000 11111
Q ss_pred HHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCC----hHHHHHHHHhhHHhhhhhchhHHHh-hHHHHHHHHhcCC
Q 009632 335 VRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEF----PDVRLNIISKLDQVNQVIGIDLLSQ-SLLPAIVELAEDR 409 (530)
Q Consensus 335 vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~----~~vr~~a~~~l~~l~~~~~~~~~~~-~l~~~l~~~~~~~ 409 (530)
-|....+.+.. ..+.++.++.+.+.... ..+...+++++...+..+..+.+.. .+++.+.+++.++
T Consensus 68 r~~~l~~~l~~---------~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~ 138 (148)
T PF08389_consen 68 RRRELKDALRS---------NSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSP 138 (148)
T ss_dssp HHHHHHHHHHH---------HHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSC
T ss_pred HHHHHHHHHHH---------HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCH
Confidence 22222222211 13344455555554332 6677777777777777665554443 4777777777555
Q ss_pred ChHHHHHHHHHH
Q 009632 410 HWRVRLAIIEYI 421 (530)
Q Consensus 410 ~~~~R~~~~~~l 421 (530)
+. |..|+++|
T Consensus 139 ~~--~~~A~~cl 148 (148)
T PF08389_consen 139 EL--REAAAECL 148 (148)
T ss_dssp CC--HHHHHHHH
T ss_pred HH--HHHHHHhC
Confidence 43 66666654
No 268
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=90.72 E-value=19 Score=35.94 Aligned_cols=144 Identities=15% Similarity=0.024 Sum_probs=92.2
Q ss_pred hHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChh----hH
Q 009632 358 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG----FF 433 (530)
Q Consensus 358 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~----~~ 433 (530)
.....+.....|-++.+|..+...++..++.+..-...-..+...-+.++|.+..+|......+..++..-+.. .+
T Consensus 275 icdsvfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f 354 (740)
T COG5537 275 ICDSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRF 354 (740)
T ss_pred HHHHHHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 33445666677888899999999998887776544333344555566788889999999999998887755422 23
Q ss_pred HHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhh
Q 009632 434 DDKLGALCMQWL-QDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPV 505 (530)
Q Consensus 434 ~~~~~~~l~~~l-~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~ 505 (530)
.+.+..-++..+ .|.+. ||..+++.+..+....- ....-+..+..+.-|.+++-|....+++..+++.
T Consensus 355 ~eRFk~rILE~~r~D~d~-VRi~sik~l~~lr~lg~---L~~SeIlIvsscmlDi~pd~r~~~~E~v~~icK~ 423 (740)
T COG5537 355 VERFKDRILEFLRTDSDC-VRICSIKSLCYLRILGV---LSSSEILIVSSCMLDIIPDSRENIVESVESICKI 423 (740)
T ss_pred HHHHHHHHHHHHhhccch-hhHHHHHHHHHHHHhcc---cchhHHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Confidence 344444455544 45555 99999999887654321 1122334444556676666555555666555554
No 269
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.72 E-value=23 Score=36.76 Aligned_cols=311 Identities=14% Similarity=0.130 Sum_probs=160.2
Q ss_pred CCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCC-chhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcCC
Q 009632 174 DDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDD-QDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQD 252 (530)
Q Consensus 174 d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d 252 (530)
.+-.+=|+.|+.+|..+++....+.....+-|++..+-.|- ++++-..+++++..+..+-... . ..+|
T Consensus 34 sTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~--------~---v~dd 102 (970)
T KOG0946|consen 34 STLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSP--------E---VMDD 102 (970)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcch--------h---hccc
Confidence 44566699999999999987766555455555555555554 4566777777776665442200 0 0011
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHH-----HHhhhhHhHhHh
Q 009632 253 KSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL-----AIQHILPCVKEL 327 (530)
Q Consensus 253 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~-----~~~~l~~~l~~~ 327 (530)
+. .+ ......|... +-. .+..+..+++.+..-+.-||..+++.+..+...-|.+. ..+.-+..+..+
T Consensus 103 s~-qs-dd~g~~iae~---fik---~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdl 174 (970)
T KOG0946|consen 103 ST-QS-DDLGLWIAEQ---FIK---NQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDL 174 (970)
T ss_pred ch-hh-hHHHHHHHHH---HHc---CchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHH
Confidence 11 11 1111111111 110 23455666666666666777777777777766555541 112333444555
Q ss_pred ccCCcHHHHHHHHHHHHhhccccCHHH---HHHhHHHHHHHhhcCC----ChHHHHHHHHhhHHhhhhhchh--HH-Hhh
Q 009632 328 SSDSSQHVRSALASVIMGMAPLLGKDA---TIEQLLPIFLSLLKDE----FPDVRLNIISKLDQVNQVIGID--LL-SQS 397 (530)
Q Consensus 328 ~~d~~~~vr~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~----~~~vr~~a~~~l~~l~~~~~~~--~~-~~~ 397 (530)
+.|...-+|-.++-.+..+....+.-. ..+.+..-++..+..+ ..-|-..++..+-++.+.-..+ .+ ...
T Consensus 175 L~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~ 254 (970)
T KOG0946|consen 175 LRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGS 254 (970)
T ss_pred HhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccc
Confidence 666666677777666666655444211 1223333344444322 1234455555555555433222 11 135
Q ss_pred HHHHHHHHh-----cCC---ChH-HHHHHHHHHHHHHhh-hCh------------hhHHHHHHHHHHHHhcCC--cHHHH
Q 009632 398 LLPAIVELA-----EDR---HWR-VRLAIIEYIPLLASQ-LGV------------GFFDDKLGALCMQWLQDK--VYSIR 453 (530)
Q Consensus 398 l~~~l~~~~-----~~~---~~~-~R~~~~~~l~~l~~~-~~~------------~~~~~~~~~~l~~~l~d~--~~~Vr 453 (530)
.+|.+.+++ .|. .|. -|..-+.+.-.+... +.+ ..+..+++..+...+..+ ...|+
T Consensus 255 ~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIl 334 (970)
T KOG0946|consen 255 YIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADIL 334 (970)
T ss_pred cHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHH
Confidence 566666543 332 454 343333322222222 111 112345666666665544 45799
Q ss_pred HHHHHHHHHHHHHhChh---HH----------hhhhHHHHHhhccCC-ChHHHHHHHHHHHHHh
Q 009632 454 DAAANNLKRLAEEFGPE---WA----------MQHITPQVLEMINNP-HYLYRMTILRAISLLA 503 (530)
Q Consensus 454 ~~a~~~l~~l~~~~~~~---~~----------~~~i~~~l~~~~~d~-~~~vr~~a~~~l~~i~ 503 (530)
..++.+++.+++..... +. ...++--+..+.+.. .+..|.+..+++..+.
T Consensus 335 tesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l 398 (970)
T KOG0946|consen 335 TESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYL 398 (970)
T ss_pred HHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 99999998887653211 10 122333444555554 6678888888887654
No 270
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=90.45 E-value=3 Score=31.66 Aligned_cols=62 Identities=13% Similarity=0.116 Sum_probs=45.7
Q ss_pred CChhHHHHHHHHHHHHHhhhcc--hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhh
Q 009632 175 DMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDC 238 (530)
Q Consensus 175 ~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~ 238 (530)
.+..-|+.+..+++.+.+..++ ..+.+++...+...+..+ +.|..|++++..+.+.+++++.
T Consensus 27 ~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~l 90 (107)
T PF08064_consen 27 KPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEEDL 90 (107)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHHH
Confidence 5667899999999999994443 233455555555555554 7999999999999999887553
No 271
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=90.34 E-value=18 Score=34.89 Aligned_cols=72 Identities=10% Similarity=-0.006 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHh-hh-----hHHHHHhhccCCCh----HHHHHHHHHHHHH
Q 009632 433 FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM-QH-----ITPQVLEMINNPHY----LYRMTILRAISLL 502 (530)
Q Consensus 433 ~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~-~~-----i~~~l~~~~~d~~~----~vr~~a~~~l~~i 502 (530)
+.+..+.....+++++++.+|..|..+...+......+... .. ..|.....-..... .+|.+++..++++
T Consensus 271 ~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~l 350 (372)
T PF12231_consen 271 HLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNL 350 (372)
T ss_pred hHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhch
Confidence 45667888889999999999999999999998765432111 11 12332222222222 7888888888877
Q ss_pred hh
Q 009632 503 AP 504 (530)
Q Consensus 503 ~~ 504 (530)
.-
T Consensus 351 ly 352 (372)
T PF12231_consen 351 LY 352 (372)
T ss_pred HH
Confidence 64
No 272
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=90.34 E-value=17 Score=34.73 Aligned_cols=408 Identities=11% Similarity=0.056 Sum_probs=191.3
Q ss_pred CCchHHHHHHHHHHhcccccC-CCccc-----hhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhh--h-----hh
Q 009632 58 DDDDEVLLAMAEELGVFIPYV-GGVEH-----AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESD--L-----VD 124 (530)
Q Consensus 58 d~~~~vr~~~~~~l~~~~~~~-~~~~~-----~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~--~-----~~ 124 (530)
..+..|+...+.|+...++.- ....| ....+..|.+.-++++..|-...+++|++++-...... + .+
T Consensus 53 ~~~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaq 132 (604)
T KOG4500|consen 53 TASDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQ 132 (604)
T ss_pred eccchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCce
Confidence 345567888888887665410 00112 24456667777778889999999999999998655421 1 23
Q ss_pred hHHHHHHHHhcCCccchhHHHHhHhhhhcCCC--ChHHHHH-----HHHHHHhhcC--CCChhHHHHHHHHHHHHHhhh-
Q 009632 125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSA--PDILKTE-----LRSIYTQLCQ--DDMPMVRRSAASNLGKFAATV- 194 (530)
Q Consensus 125 ~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~--~~~~~~~-----l~~~l~~l~~--d~~~~vR~~a~~~l~~l~~~~- 194 (530)
.++..+...+..+++.........++.+...+ +++.+.+ +++.+..... -.+....+...-.+.++.+..
T Consensus 133 ivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~ 212 (604)
T KOG4500|consen 133 IVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVC 212 (604)
T ss_pred ehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHH
Confidence 35666666665555443333222233322221 1222222 3333332221 111122222222222222211
Q ss_pred ---cchhhHHHHHHHHHHhhc-CCchhHHHHHHHHHHHHhhhcC------chhhhhccHHHHHHhcCCCCHHHHHHHHHH
Q 009632 195 ---EPAHLKTDIMSIFEDLTQ-DDQDSVRLLAVEGCAALGKLLE------PQDCVAHILPVIVNFSQDKSWRVRYMVANQ 264 (530)
Q Consensus 195 ---~~~~~~~~l~~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~~------~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~ 264 (530)
.+-.....+.-.+.+++. .-++.++....+.+...++.-- +......++..+.+.-.+.+..--....+.
T Consensus 213 e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~ 292 (604)
T KOG4500|consen 213 EMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKR 292 (604)
T ss_pred HhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHh
Confidence 111111112222222222 1234566666666665554311 111122233333332222221111222222
Q ss_pred HHHHHHH--hCCcc-----cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC------HHHHHhhhhHhHhH-hccC
Q 009632 265 LYELCEA--VGPEP-----TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN------PELAIQHILPCVKE-LSSD 330 (530)
Q Consensus 265 l~~l~~~--~~~~~-----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~------~~~~~~~l~~~l~~-~~~d 330 (530)
...+.-. .|++. ..++++..+...+..++.+....+.-+++.|++.-. .+.+.+.++..+.+ -..|
T Consensus 293 ~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vd 372 (604)
T KOG4500|consen 293 IAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVD 372 (604)
T ss_pred hhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 2222221 23332 233477888888888888888899999998877432 23445666666644 3446
Q ss_pred CcHHHHHHHHHHHHhhcc-ccCHHHH-HHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhc--hhHH--HhhHHHHHHH
Q 009632 331 SSQHVRSALASVIMGMAP-LLGKDAT-IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--IDLL--SQSLLPAIVE 404 (530)
Q Consensus 331 ~~~~vr~~~~~~l~~l~~-~~~~~~~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~~~~--~~~l~~~l~~ 404 (530)
.+-++..+++.++..+.- ...+..+ ...+...++..++-..+.|.-.-..++.-+...-. ..+. .+.++..+..
T Consensus 373 gnV~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~ 452 (604)
T KOG4500|consen 373 GNVERQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVD 452 (604)
T ss_pred ccchhHHHHHHHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHH
Confidence 677777888888877642 2222222 22334445555555555554444443333221100 0001 1456777777
Q ss_pred HhcCCChH-HHHHHHHHHHHHHhhhChhhH-----HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 009632 405 LAEDRHWR-VRLAIIEYIPLLASQLGVGFF-----DDKLGALCMQWLQDKVYSIRDAAANNLKRLAE 465 (530)
Q Consensus 405 ~~~~~~~~-~R~~~~~~l~~l~~~~~~~~~-----~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~ 465 (530)
..+++++. +--..-..+..+.+...-+.+ ....+......+...+-.....|+-++..+..
T Consensus 453 Wsks~D~aGv~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~~ 519 (604)
T KOG4500|consen 453 WSKSPDFAGVAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTES 519 (604)
T ss_pred hhhCCccchhhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHHH
Confidence 77777654 433344444444332110000 01123334444445555566666666665543
No 273
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=90.11 E-value=0.59 Score=28.33 Aligned_cols=23 Identities=35% Similarity=0.326 Sum_probs=11.8
Q ss_pred HHHHHHHHhhcCCchhHHHHHHH
Q 009632 202 DIMSIFEDLTQDDQDSVRLLAVE 224 (530)
Q Consensus 202 ~l~~~l~~~~~d~~~~vr~~a~~ 224 (530)
.+...+...+.|+++.||.+|++
T Consensus 18 ~v~~~i~~rl~D~s~~VR~aav~ 40 (42)
T PF12765_consen 18 DVQSAIIRRLSDSSPSVREAAVD 40 (42)
T ss_pred HHHHHHHHHhcCCChHHHHHHHH
Confidence 44444555555555555555544
No 274
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=90.01 E-value=7.7 Score=30.22 Aligned_cols=71 Identities=15% Similarity=0.089 Sum_probs=43.6
Q ss_pred HhhHHHHHHHHhc-CCChHHHHHHHHHHHHHHhhhChh-hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh
Q 009632 395 SQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGVG-FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF 467 (530)
Q Consensus 395 ~~~l~~~l~~~~~-~~~~~~R~~~~~~l~~l~~~~~~~-~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~ 467 (530)
...++|.+.+.++ ......|.++...++.++....-. ...+.++..+.+....... ...++-++..+++..
T Consensus 4 l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 4 LPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 3567888888777 666788888888888888765522 1222333333333322222 466777788777665
No 275
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.98 E-value=29 Score=36.88 Aligned_cols=89 Identities=16% Similarity=0.126 Sum_probs=63.5
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC---hhHH--hhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcC---h
Q 009632 437 LGALCMQWLQDKVYSIRDAAANNLKRLAEEFG---PEWA--MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG---S 508 (530)
Q Consensus 437 ~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~---~~~~--~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~---~ 508 (530)
++....++++++...+|..++.++..-..-+. +... .....|.+...+.+.|+.+-..|++++..++...| .
T Consensus 804 Il~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv~ 883 (1014)
T KOG4524|consen 804 ILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFVA 883 (1014)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHHH
Confidence 45555667788888888888888765443332 1111 13456666677889999999999999999998877 3
Q ss_pred HHHHhhHHHHHHhhccC
Q 009632 509 EITCSRLLPVVINASKD 525 (530)
Q Consensus 509 ~~~~~~~~p~l~~~l~D 525 (530)
..+.+.++|.+..++.|
T Consensus 884 sR~l~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 884 SRFLEDVLPWLKHLCQD 900 (1014)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56788889988877665
No 276
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=89.94 E-value=9 Score=30.87 Aligned_cols=109 Identities=11% Similarity=0.009 Sum_probs=68.6
Q ss_pred CCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchh----hhhccHHHHHH
Q 009632 173 QDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD----CVAHILPVIVN 248 (530)
Q Consensus 173 ~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~~~~~l~~ 248 (530)
.+++|..-...|..+.. .+.-..+.+..+.+.+.+.++.+...|+..+..+.+.+|..- ....++..+..
T Consensus 18 ~~~dw~~ileicD~In~------~~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~ 91 (142)
T cd03569 18 GEPDLASILEICDMIRS------KDVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKD 91 (142)
T ss_pred CccCHHHHHHHHHHHhC------CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHH
Confidence 34566554444444432 111234566777788888888999999999999998888631 12335555555
Q ss_pred hcC-CCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHH
Q 009632 249 FSQ-DKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVR 287 (530)
Q Consensus 249 ~~~-d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ 287 (530)
+++ ..+..||..+...+...+..++.+.....+...+..
T Consensus 92 l~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~y~~ 131 (142)
T cd03569 92 LIKTTKNEEVRQKILELIQAWALAFRNKPQLKYVVDTYQI 131 (142)
T ss_pred HHcccCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHH
Confidence 554 456778888888888888777655433444444433
No 277
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=89.92 E-value=6.2 Score=29.97 Aligned_cols=61 Identities=15% Similarity=0.134 Sum_probs=33.0
Q ss_pred CcHHHHHHHHHHHHHHHHHhChhHH--hhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcChHH
Q 009632 448 KVYSIRDAAANNLKRLAEEFGPEWA--MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI 510 (530)
Q Consensus 448 ~~~~Vr~~a~~~l~~l~~~~~~~~~--~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~~~ 510 (530)
....-|..++++++.+.+..|+... ..+++.+|...+..+ +.|..+++++..++..++.++
T Consensus 27 ~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~ 89 (107)
T PF08064_consen 27 KPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEED 89 (107)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHH
Confidence 4445667777777777763332211 122333333333333 667777777777777776654
No 278
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.74 E-value=16 Score=33.34 Aligned_cols=101 Identities=16% Similarity=0.170 Sum_probs=64.4
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHHHhhhcchh---hHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc-hhhhhcc
Q 009632 167 IYTQLCQDDMPMVRRSAASNLGKFAATVEPAH---LKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP-QDCVAHI 242 (530)
Q Consensus 167 ~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~ 242 (530)
-+..++.+.+|.||+.|+..+..+... +-.. .....++.+.+++.|..+ -.-|+.++.+++..-+- +.....+
T Consensus 7 elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~~ 83 (353)
T KOG2973|consen 7 ELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQDL 83 (353)
T ss_pred HHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHHH
Confidence 445678899999999999888887765 3222 223467778888888776 33455666666654321 2223335
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 009632 243 LPVIVNFSQDKSWRVRYMVANQLYELCE 270 (530)
Q Consensus 243 ~~~l~~~~~d~~~~vr~~~~~~l~~l~~ 270 (530)
+..+...+.|+.|..-...|..+.++++
T Consensus 84 ~k~l~~~~~~p~~~lad~~cmlL~NLs~ 111 (353)
T KOG2973|consen 84 LKVLMDMLTDPQSPLADLICMLLSNLSR 111 (353)
T ss_pred HHHHHHHhcCcccchHHHHHHHHHHhcc
Confidence 5555556667766666667777766654
No 279
>PF05536 Neurochondrin: Neurochondrin
Probab=89.69 E-value=26 Score=35.74 Aligned_cols=226 Identities=17% Similarity=0.094 Sum_probs=130.2
Q ss_pred cHHHHHHHhcChhHHHHHHHhhcHHHHHHhhCh-----Hhhhhcc----ccccccc--c--CCchHH-HHHHHHHHhccc
Q 009632 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGE-----ERTRKEL----IPFLSEN--N--DDDDEV-LLAMAEELGVFI 75 (530)
Q Consensus 10 ~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~-----~~~~~~l----~~~l~~~--~--d~~~~v-r~~~~~~l~~~~ 75 (530)
.+..-+.-|++.+...|..++-.+.++...-+. ..+++.+ +..|... . +.++.. +..+...|..|.
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 356667778888888999999888887653221 1122222 2222221 1 113333 333333445554
Q ss_pred cc--CCCccchhcchhHHHhhhcccch-HHHHHHHHHHHHHHhhcCh-hh-hhhhHHHHHHHHhcCCccchhHHHHhHhh
Q 009632 76 PY--VGGVEHAHVLLPPLETLCTVEET-CVRDKAVESLCRIGSQMRE-SD-LVDWYIPLVKRLAAGEWFTARVSACGLFH 150 (530)
Q Consensus 76 ~~--~~~~~~~~~l~~~l~~l~~d~~~-~vR~~a~~~l~~l~~~~~~-~~-~~~~l~~~l~~l~~~~~~~~r~~~~~~l~ 150 (530)
.- +.........+|.|...+...+. .+-..+..+|..++..-.. +. .....++.+.+...+ .......+..++.
T Consensus 86 ~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~ 164 (543)
T PF05536_consen 86 RDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLL 164 (543)
T ss_pred CChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHH
Confidence 31 11122234456777777766555 8888999999999854322 11 222344555555444 4455666666666
Q ss_pred hhcCCCChH-------HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc--------hhhHHHHHHHHHHhhcCC-
Q 009632 151 IAYPSAPDI-------LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP--------AHLKTDIMSIFEDLTQDD- 214 (530)
Q Consensus 151 ~l~~~~~~~-------~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~--------~~~~~~l~~~l~~~~~d~- 214 (530)
.+....+.+ ....+++.+..........-|-.++..|+.+....+. +...+.+...+..+++..
T Consensus 165 ~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~ 244 (543)
T PF05536_consen 165 NLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRL 244 (543)
T ss_pred HHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCC
Confidence 655444422 2344556666666566667777888888888776631 234455666666666554
Q ss_pred chhHHHHHHHHHHHHhhhcCch
Q 009632 215 QDSVRLLAVEGCAALGKLLEPQ 236 (530)
Q Consensus 215 ~~~vr~~a~~~l~~l~~~~~~~ 236 (530)
.+.-|..++.....+.+..|.+
T Consensus 245 ~~~~R~~al~Laa~Ll~~~G~~ 266 (543)
T PF05536_consen 245 TPSQRDPALNLAASLLDLLGPE 266 (543)
T ss_pred CHHHHHHHHHHHHHHHHHhChH
Confidence 5667888888888888877753
No 280
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=89.65 E-value=35 Score=38.38 Aligned_cols=300 Identities=11% Similarity=0.083 Sum_probs=141.7
Q ss_pred cccccccc---ccC-CchHHHHHHHHHHhcccccCCCcc---chhcchhHHHhh----------h-----cccchHHHHH
Q 009632 48 ELIPFLSE---NND-DDDEVLLAMAEELGVFIPYVGGVE---HAHVLLPPLETL----------C-----TVEETCVRDK 105 (530)
Q Consensus 48 ~l~~~l~~---~~d-~~~~vr~~~~~~l~~~~~~~~~~~---~~~~l~~~l~~l----------~-----~d~~~~vR~~ 105 (530)
..+|++.+ ..| ++.+.|+.+..+|.+++..-.+.. ....++.+|.++ + .-....+++.
T Consensus 235 gCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~ 314 (2195)
T KOG2122|consen 235 GCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQ 314 (2195)
T ss_pred cchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchh
Confidence 45666655 233 367899999999999887432211 123455554421 1 1124556676
Q ss_pred HHHHHHHHHhhcChhhhhhh-----HHHHHHHHh-----------cCC-ccchhHHHHhHhhhhcCC--CChH---HHHH
Q 009632 106 AVESLCRIGSQMRESDLVDW-----YIPLVKRLA-----------AGE-WFTARVSACGLFHIAYPS--APDI---LKTE 163 (530)
Q Consensus 106 a~~~l~~l~~~~~~~~~~~~-----l~~~l~~l~-----------~~~-~~~~r~~~~~~l~~l~~~--~~~~---~~~~ 163 (530)
.+.++..+++.-.++..... .+..+-+|+ ++. ....|.++...+..+... ..+. -...
T Consensus 315 lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rg 394 (2195)
T KOG2122|consen 315 LCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRG 394 (2195)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhh
Confidence 66777777775443322111 112222221 111 234566666666554321 1111 2234
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc--hhhHH---HHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCch--
Q 009632 164 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP--AHLKT---DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ-- 236 (530)
Q Consensus 164 l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~---~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~-- 236 (530)
++..+..-+.....++.+..+..|.++.=+... ..... .+..+..-.+....+..-++.+.+|.+++.++...
T Consensus 395 fMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA 474 (2195)
T KOG2122|consen 395 FMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKA 474 (2195)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccch
Confidence 444444433333334444444444444322111 01111 11122222233333344445555666666555432
Q ss_pred hh--hhccHHHHHHhcCC----CCHHHHHHHHHHHHHHHHHhCCcc-c-----ccchHHHHHHhcCCCcHHHHHHHHHHH
Q 009632 237 DC--VAHILPVIVNFSQD----KSWRVRYMVANQLYELCEAVGPEP-T-----RMDLVPAYVRLLRDNEAEVRIAAAGKV 304 (530)
Q Consensus 237 ~~--~~~~~~~l~~~~~d----~~~~vr~~~~~~l~~l~~~~~~~~-~-----~~~l~~~l~~~l~d~~~~vr~~a~~~l 304 (530)
.+ .+..+-+|..++.- +.-.+-..+...|.++...+.... + ....+..+++.|+..+-.|..+++.+|
T Consensus 475 ~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTL 554 (2195)
T KOG2122|consen 475 EICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTL 554 (2195)
T ss_pred hhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhh
Confidence 11 22344444444332 222333344444444444433211 1 124667777777777666666666666
Q ss_pred HHHHHhhCHH---HHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhc
Q 009632 305 TKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMA 347 (530)
Q Consensus 305 ~~~~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~ 347 (530)
-.+......+ .|...-++.+.+++.+++..+-...+.++-.+.
T Consensus 555 WNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLl 600 (2195)
T KOG2122|consen 555 WNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLL 600 (2195)
T ss_pred hhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHh
Confidence 5554433222 233445777788888877777666666665543
No 281
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=89.60 E-value=18 Score=34.00 Aligned_cols=68 Identities=13% Similarity=0.217 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhcc
Q 009632 256 RVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS 329 (530)
Q Consensus 256 ~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 329 (530)
.-++.+.+.|+.+-..++.-. ...+...+.++.|.+-.||..|++.|+.+|+. +....+.+.+.++++
T Consensus 39 k~k~lasq~ip~~fk~fp~la--~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~----d~~~rv~d~l~qLLn 106 (460)
T KOG2213|consen 39 KEKRLASQFIPRFFKHFPSLA--DEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG----DALSRVNDVLVQLLN 106 (460)
T ss_pred HHHHHHHHHHHHHHhhCchhh--hHHHHhhhccccccchhhHHHHHhccchhccC----chhhhhHHHHHHHHH
Confidence 345566666666666554322 23455566777888888888888888888875 233455555555554
No 282
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=89.49 E-value=9.3 Score=30.40 Aligned_cols=97 Identities=12% Similarity=0.043 Sum_probs=61.3
Q ss_pred CCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchh---hh-hccHHHHHH
Q 009632 173 QDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD---CV-AHILPVIVN 248 (530)
Q Consensus 173 ~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~---~~-~~~~~~l~~ 248 (530)
.+++|..-...+..+..- +.-....+..+.+.+.++++.++..|+..+..+.+.+|+.- +. ..++..+..
T Consensus 14 ~~~D~~~il~icd~I~~~------~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~ 87 (133)
T cd03561 14 EEPDWALNLELCDLINLK------PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVK 87 (133)
T ss_pred CCccHHHHHHHHHHHhCC------CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHH
Confidence 345665555444444322 12234567777788888888899999999999888887621 11 123333445
Q ss_pred hcCC---CCHHHHHHHHHHHHHHHHHhCCc
Q 009632 249 FSQD---KSWRVRYMVANQLYELCEAVGPE 275 (530)
Q Consensus 249 ~~~d---~~~~vr~~~~~~l~~l~~~~~~~ 275 (530)
++.. .+..||..+...+......++..
T Consensus 88 l~~~~~~~~~~Vk~kil~ll~~W~~~f~~~ 117 (133)
T cd03561 88 IAKNSPKYDPKVREKALELILAWSESFGGH 117 (133)
T ss_pred HhCCCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 5443 46678888888888887777654
No 283
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=89.40 E-value=3.6 Score=36.90 Aligned_cols=74 Identities=15% Similarity=0.147 Sum_probs=46.2
Q ss_pred HHHHHhHHHHHHHhhc------CC----ChHHHHHHHHhhHHhhhhhchhHH--HhhHHHHHHHHhcC--CChHHHHHHH
Q 009632 353 DATIEQLLPIFLSLLK------DE----FPDVRLNIISKLDQVNQVIGIDLL--SQSLLPAIVELAED--RHWRVRLAII 418 (530)
Q Consensus 353 ~~~~~~l~~~l~~~l~------d~----~~~vr~~a~~~l~~l~~~~~~~~~--~~~l~~~l~~~~~~--~~~~~R~~~~ 418 (530)
+.+..+++|.++.++- ++ ...+|..|+..++.++..++.... .+.+...+.+..-| +.+.....|+
T Consensus 272 dPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~YGal 351 (450)
T COG5095 272 DPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQYGAL 351 (450)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchhhhhh
Confidence 4556677777776652 22 246999999999999998886532 23333333333222 3466677778
Q ss_pred HHHHHHHh
Q 009632 419 EYIPLLAS 426 (530)
Q Consensus 419 ~~l~~l~~ 426 (530)
..++.+.+
T Consensus 352 kgls~l~k 359 (450)
T COG5095 352 KGLSILSK 359 (450)
T ss_pred hhhhhhch
Confidence 77777654
No 284
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=88.84 E-value=14 Score=31.67 Aligned_cols=64 Identities=20% Similarity=0.213 Sum_probs=34.1
Q ss_pred HHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 009632 205 SIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA 271 (530)
Q Consensus 205 ~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~ 271 (530)
+.+.....+++.-+|..+...+...... +...+.+++.+..+..|++..||.+++.+|..++..
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~---~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~ 171 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK---ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKK 171 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence 4555556666655555555554443332 122344555555555555566666666666555543
No 285
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=88.82 E-value=32 Score=35.64 Aligned_cols=262 Identities=14% Similarity=0.130 Sum_probs=132.1
Q ss_pred hhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHh
Q 009632 239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQ 318 (530)
Q Consensus 239 ~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~ 318 (530)
+..++..+..+..|+=..|+..++.++..+...-++ ....++..+++-+.|+...+...|...|..+...-+.- ..
T Consensus 302 y~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPE--qE~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnM--K~ 377 (988)
T KOG2038|consen 302 YFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPE--QENNLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNM--KI 377 (988)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcH--HHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcc--ee
Confidence 455788888889999899999998888887654222 23468888999999999888888888887776543321 11
Q ss_pred hhhHhHhHhcc--CCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhc--------C------------------C
Q 009632 319 HILPCVKELSS--DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK--------D------------------E 370 (530)
Q Consensus 319 ~l~~~l~~~~~--d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~--------d------------------~ 370 (530)
.++..+..++- +.+.+....++..+..+.-.-........++.+.+.+++ | .
T Consensus 378 Vvi~EIer~~FRpn~~~ra~Yyav~fLnQ~~Lshke~dvAnrLi~iYF~lFk~l~~~~~~d~~k~~k~~~k~kks~k~~k 457 (988)
T KOG2038|consen 378 VVIDEIERLAFRPNVSERAHYYAVIFLNQMKLSHKESDVANRLISIYFSLFKTLVGKKDKDNRKDDKGAAKKKKSNKKDK 457 (988)
T ss_pred ehHHHHHHHHcccCccccceeehhhhhhhhHhccchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhcccccccch
Confidence 22333333322 222333334444444433222223333444444333321 1 0
Q ss_pred ChHHHHHHHH-----hhHHhh----hhhc----hhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHH
Q 009632 371 FPDVRLNIIS-----KLDQVN----QVIG----IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKL 437 (530)
Q Consensus 371 ~~~vr~~a~~-----~l~~l~----~~~~----~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~ 437 (530)
...++..+.. .|..+. ..+. ++.....-++.|..+..+.|+.+-..++..|-++... .++..+.+
T Consensus 458 ~e~~~~e~~~e~nsrllSAlLTGvNRAfPfaq~~ddk~~~~~~tLFkl~HssNFNTsVQaLmLlfQvs~~--~~~vSDRy 535 (988)
T KOG2038|consen 458 KEEVSTESPIELNSRLLSALLTGVNRAFPFAQTADDKLEEQMKTLFKLTHSSNFNTSVQALMLLFQVSKK--NDYVSDRY 535 (988)
T ss_pred hhhhcccchhhhhHHHHHHHHhcccccCCcccCchHHHHHHhHHHHHHHhhcccchhHHHHHHHHHHHHh--hhhhHHHH
Confidence 1112211111 111111 1111 1222345567777888888888777777777666542 22233333
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhh---hhHHHHHhhccCCChHHHHHHHHHHHHHhhhc
Q 009632 438 GALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQ---HITPQVLEMINNPHYLYRMTILRAISLLAPVM 506 (530)
Q Consensus 438 ~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~---~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~ 506 (530)
-..+..-|-||...--......|+-++..+..+...+ .++..+++..--..+..-.+++..+..+...-
T Consensus 536 Y~aLY~kLLdP~l~~sSKq~m~LnLlykslK~D~ni~RV~AFvKRlLQVa~~q~P~~i~G~l~Llsel~Kar 607 (988)
T KOG2038|consen 536 YRALYRKLLDPRLMNSSKQAMFLNLLYKSLKEDINIQRVRAFVKRLLQVAVQQQPPFICGILFLLSELLKAR 607 (988)
T ss_pred HHHHHHHhcCcccCchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCchhHhHHHHHHHHHHhc
Confidence 3344444445433223333444455555554332222 22333333322334444455555555555443
No 286
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=88.71 E-value=4.7 Score=33.36 Aligned_cols=76 Identities=14% Similarity=0.108 Sum_probs=56.4
Q ss_pred CCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchh--hhhccHHHHHHhc
Q 009632 174 DDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD--CVAHILPVIVNFS 250 (530)
Q Consensus 174 d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~~ 250 (530)
|..-++|++|.+++..+...+........+++.+...+.| +..||..+...+..++...+... ..+.+.+.+...+
T Consensus 38 DDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L 115 (169)
T PF08623_consen 38 DDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTL 115 (169)
T ss_dssp EGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHh
Confidence 6678999999999999999877766677788999999999 88999999999999877655421 2334555554443
No 287
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=88.41 E-value=4.4 Score=30.69 Aligned_cols=71 Identities=15% Similarity=0.223 Sum_probs=49.3
Q ss_pred HHHHHhhcCCCC----hhHHHHHHHHHHHHHhhhcch--hhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchh
Q 009632 165 RSIYTQLCQDDM----PMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD 237 (530)
Q Consensus 165 ~~~l~~l~~d~~----~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~ 237 (530)
+..+...+.|.+ ..-|+.+..+++.+.+..++. .+.+++..-+...+. .++.|..|++++..+...+++++
T Consensus 13 l~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~~~ 89 (107)
T smart00802 13 LAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKEEE 89 (107)
T ss_pred HHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCHHH
Confidence 344444455554 345899999999999976652 334455555665565 45699999999999999988754
No 288
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=88.39 E-value=32 Score=35.19 Aligned_cols=107 Identities=12% Similarity=0.048 Sum_probs=82.9
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchh--------hHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc-
Q 009632 165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH--------LKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP- 235 (530)
Q Consensus 165 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~--------~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~- 235 (530)
+..+.+++++++...|-+.+++++++...+.++. -...++..+.+.+.|.++-+|..|++.+..+...-.+
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~ 380 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT 380 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc
Confidence 3556678889999999999999999987765532 2345788888999999999999999999988876443
Q ss_pred hhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 009632 236 QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA 271 (530)
Q Consensus 236 ~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~ 271 (530)
......+...+...++|.+..||+.+.+.+..+...
T Consensus 381 ~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~ 416 (1128)
T COG5098 381 VGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMR 416 (1128)
T ss_pred cchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhc
Confidence 112345777777888899999999998888776543
No 289
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=88.13 E-value=12 Score=29.83 Aligned_cols=71 Identities=10% Similarity=0.069 Sum_probs=40.3
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchh----hHHHHHHHHHHhhcCCch--hHHHHHHHHHHHHhhhc
Q 009632 163 ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH----LKTDIMSIFEDLTQDDQD--SVRLLAVEGCAALGKLL 233 (530)
Q Consensus 163 ~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~~~d~~~--~vr~~a~~~l~~l~~~~ 233 (530)
+.+..+.+-+.++++.+...|+..+..+.+++|... ....++..+..++.+... .||..+++.+...+..+
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f 113 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAF 113 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 344445555556777777777777777777766532 223355555555554322 26666666555555544
No 290
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=87.79 E-value=7.5 Score=30.91 Aligned_cols=74 Identities=15% Similarity=0.165 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHh----hhhHHHHHhhccCC-ChH-HHHHHHHHHHHHhhhcCh
Q 009632 435 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM----QHITPQVLEMINNP-HYL-YRMTILRAISLLAPVMGS 508 (530)
Q Consensus 435 ~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~----~~i~~~l~~~~~d~-~~~-vr~~a~~~l~~i~~~~~~ 508 (530)
...+..+.+-+..+++.|...|+..+..+++.+|..+.. ..++..|.+++.++ +.. ||..++..+..+...+..
T Consensus 36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~ 115 (133)
T smart00288 36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFKN 115 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcC
Confidence 345666777788889999999999999999998876543 55777777777664 323 899999999998887754
No 291
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=87.76 E-value=5.9 Score=28.61 Aligned_cols=68 Identities=6% Similarity=0.025 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHHHHHhChhHHh--hhhHHHHHhhccCCChHHHHHHHHHHH
Q 009632 433 FDDKLGALCMQW-LQDKVYSIRDAAANNLKRLAEEFGPEWAM--QHITPQVLEMINNPHYLYRMTILRAIS 500 (530)
Q Consensus 433 ~~~~~~~~l~~~-l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~--~~i~~~l~~~~~d~~~~vr~~a~~~l~ 500 (530)
|...++..+... ...++.+||+..+.|+..+....|..... ..++..+.....|.+..+-..|.+++.
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 444455555555 34567788888888888888876644211 456666666677777777666666654
No 292
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=87.08 E-value=27 Score=32.81 Aligned_cols=136 Identities=11% Similarity=0.156 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHhhccccC-HHHHHHhHHHHHHH-hhcC---CChHHHHH-HHHhhHHhhhhhchh------HHHhhHHHH
Q 009632 334 HVRSALASVIMGMAPLLG-KDATIEQLLPIFLS-LLKD---EFPDVRLN-IISKLDQVNQVIGID------LLSQSLLPA 401 (530)
Q Consensus 334 ~vr~~~~~~l~~l~~~~~-~~~~~~~l~~~l~~-~l~d---~~~~vr~~-a~~~l~~l~~~~~~~------~~~~~l~~~ 401 (530)
.+|..++..+..+..... .+.....++|.+.. .|.| ..+..|.. ++..+..++..++.. .+.+.++..
T Consensus 42 ~iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~ 121 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFEC 121 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 466777777777766554 23344455555444 4433 34444432 344555555555431 223444445
Q ss_pred HHHHhcCC---ChHHHHHHHHHHHHHHhhhChhh------HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCh
Q 009632 402 IVELAEDR---HWRVRLAIIEYIPLLASQLGVGF------FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP 469 (530)
Q Consensus 402 l~~~~~~~---~~~~R~~~~~~l~~l~~~~~~~~------~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~ 469 (530)
...+..+. -+..|......+..+...+-... ....++..+.-.++++..+|...++.++..+...+..
T Consensus 122 Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 122 TLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 55555442 47899999999988887643222 1234677778888999999999999999999987755
No 293
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=86.67 E-value=11 Score=28.50 Aligned_cols=58 Identities=16% Similarity=0.155 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHhChhHH--hhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcChHH
Q 009632 451 SIRDAAANNLKRLAEEFGPEWA--MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI 510 (530)
Q Consensus 451 ~Vr~~a~~~l~~l~~~~~~~~~--~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~~~ 510 (530)
.-|..++.+++.+.+..|+... ..++..+|...+. ..+.|..+++++..+...++.++
T Consensus 30 ~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~~~ 89 (107)
T smart00802 30 NEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKEEE 89 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCHHH
Confidence 4588888888888886664421 1334444444444 44588888888888888887654
No 294
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=86.45 E-value=26 Score=35.12 Aligned_cols=142 Identities=18% Similarity=0.134 Sum_probs=88.7
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchh----hh
Q 009632 164 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD----CV 239 (530)
Q Consensus 164 l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~----~~ 239 (530)
+...+..-..|-++.+|-.+...++..+...|.-.+.-..+...-=.+.|.+..||....+.+..++...+... +.
T Consensus 276 cdsvfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~ 355 (740)
T COG5537 276 CDSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFV 355 (740)
T ss_pred HHHHHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 33455566779999999999999999888765533222233333335789999999999999999998876533 22
Q ss_pred hccHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 009632 240 AHILPVIVNF-SQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCR 309 (530)
Q Consensus 240 ~~~~~~l~~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~ 309 (530)
+.+...+.+. ..|.+- ||-...+.+..+... |-- ...-+-.+..++-|..|+-|+.-.+.+..+++
T Consensus 356 eRFk~rILE~~r~D~d~-VRi~sik~l~~lr~l-g~L--~~SeIlIvsscmlDi~pd~r~~~~E~v~~icK 422 (740)
T COG5537 356 ERFKDRILEFLRTDSDC-VRICSIKSLCYLRIL-GVL--SSSEILIVSSCMLDIIPDSRENIVESVESICK 422 (740)
T ss_pred HHHHHHHHHHHhhccch-hhHHHHHHHHHHHHh-ccc--chhHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 3333333333 345555 999998888777653 111 12223444555667666655554444444444
No 295
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.28 E-value=41 Score=34.12 Aligned_cols=52 Identities=8% Similarity=0.079 Sum_probs=40.3
Q ss_pred HHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhh
Q 009632 337 SALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 388 (530)
Q Consensus 337 ~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 388 (530)
..+.++...+....+...+.+.++..+...++|....++..++.++..+...
T Consensus 303 ~vav~c~~~Ll~a~pHFN~~~kiv~l~vr~in~~~~~~s~~~i~t~k~lf~~ 354 (704)
T KOG2153|consen 303 QVAVQCACELLEAVPHFNLRQKIVKLVVRLINDPGRPVSSGCIQTIKTLFEN 354 (704)
T ss_pred HHHHHHHHHHHHhhhhccHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhcC
Confidence 3455555666655555667888999999999999999999999999888654
No 296
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=86.02 E-value=2.3 Score=35.13 Aligned_cols=57 Identities=18% Similarity=-0.014 Sum_probs=41.3
Q ss_pred ChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh
Q 009632 410 HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF 467 (530)
Q Consensus 410 ~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~ 467 (530)
.-.+|.+|.+++.++...+....-...++..+..++.| ...||.-+...+..++...
T Consensus 40 GLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~ 96 (169)
T PF08623_consen 40 GLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLA 96 (169)
T ss_dssp GGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhC
Confidence 45788888888888877666655556678888888888 8888888888887776543
No 297
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=86.01 E-value=14 Score=28.66 Aligned_cols=69 Identities=10% Similarity=0.051 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHh-----hhhHHHHHhhcc--------CCChHHHHHHHHHHHH
Q 009632 435 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM-----QHITPQVLEMIN--------NPHYLYRMTILRAISL 501 (530)
Q Consensus 435 ~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~-----~~i~~~l~~~~~--------d~~~~vr~~a~~~l~~ 501 (530)
..++.++.+-|+++.+.|+..++++|..++...++.+.. ..++..+.+.-. +++..||..|-+++.-
T Consensus 37 ~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~ 116 (122)
T cd03572 37 QELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKA 116 (122)
T ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHH
Confidence 468888999999999999999999999988886655432 234444444322 2366799999988876
Q ss_pred Hh
Q 009632 502 LA 503 (530)
Q Consensus 502 i~ 503 (530)
+.
T Consensus 117 if 118 (122)
T cd03572 117 IF 118 (122)
T ss_pred Hh
Confidence 64
No 298
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=85.86 E-value=17 Score=29.27 Aligned_cols=76 Identities=14% Similarity=0.190 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHh----hhhHHHHHhhccCC-ChH---HHHHHHHHHHHHhhh
Q 009632 434 DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM----QHITPQVLEMINNP-HYL---YRMTILRAISLLAPV 505 (530)
Q Consensus 434 ~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~----~~i~~~l~~~~~d~-~~~---vr~~a~~~l~~i~~~ 505 (530)
....+..+.+-+..+++.|...|+..+..+++..|..+.. ..++..+.+++.++ ... ||..++..+..+...
T Consensus 40 ~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 40 AKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence 3556777888888999999999999999999999877543 55788888876543 322 899999999999888
Q ss_pred cChH
Q 009632 506 MGSE 509 (530)
Q Consensus 506 ~~~~ 509 (530)
++..
T Consensus 120 f~~~ 123 (140)
T PF00790_consen 120 FKSD 123 (140)
T ss_dssp TTTS
T ss_pred HCCC
Confidence 7543
No 299
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=85.75 E-value=9.3 Score=38.78 Aligned_cols=174 Identities=17% Similarity=0.124 Sum_probs=92.9
Q ss_pred CchhHHHHHHHHHHHHhhhcCc-----------hhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccc----
Q 009632 214 DQDSVRLLAVEGCAALGKLLEP-----------QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR---- 278 (530)
Q Consensus 214 ~~~~vr~~a~~~l~~l~~~~~~-----------~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~---- 278 (530)
++...|..-.+++.+++..+-+ ..+.+.++..+....++.+..+|-.++..++++++.++.....
T Consensus 208 e~s~L~~~l~~~lS~lGi~llP~~~pi~sN~~sh~~l~~iV~f~~~s~Ss~~~~~rf~~a~~~aki~srl~w~l~~sfi~ 287 (993)
T COG5234 208 ENSALRKLLCKCLSRLGIVLLPVNLPIDSNEESHIYLEVIVDFLLSSVSSIDSFVRFSAAKGLAKIISRLPWNLAESFID 287 (993)
T ss_pred cHHHHHHHHHHHhhhcCceecccccCcccCcchhHHHHHHHHHHHcCcccccHHHHHHHHhhHHHHHhhcccccHHHHHH
Confidence 3455666666677777665433 1234445666666677788899999999999998877643210
Q ss_pred --cchHHH-HHHhcC------CCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccC--------CcHHHHHHHHH
Q 009632 279 --MDLVPA-YVRLLR------DNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSD--------SSQHVRSALAS 341 (530)
Q Consensus 279 --~~l~~~-l~~~l~------d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d--------~~~~vr~~~~~ 341 (530)
+...+. +++.++ +.++.+-..++.-++ ++...+-+...-.+.|.+.+.+.- +...+|.+.+.
T Consensus 288 ii~~~~en~~~s~l~~~cdii~tnel~w~~~i~~~a-la~~~~id~~d~~i~~iI~kg~~y~~~~~~~v~g~~IRdss~f 366 (993)
T COG5234 288 IIELMTENMFLSPLENTCDIIITNELVWHGAILFFA-LAGAGLIDYSDCLILPIIEKGLSYEVRYGTRVTGQSIRDSSCF 366 (993)
T ss_pred HHHhcccccchhhhhCccceeecchHHHHHHHHHHH-Hhhccccchhhhhhhhheccccceeehheeeeccceeecccce
Confidence 111111 222222 233344444433333 333322222111244444333221 12256666665
Q ss_pred HHHhhccccCH---HHHHHhHHHHHHH-hhcCCChHHHHHHHHhhHHhhhh
Q 009632 342 VIMGMAPLLGK---DATIEQLLPIFLS-LLKDEFPDVRLNIISKLDQVNQV 388 (530)
Q Consensus 342 ~l~~l~~~~~~---~~~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~ 388 (530)
.+..+...... +.....+...+.+ .+=|+.-.+|.+|..++-+++..
T Consensus 367 ~vWs~~r~~S~s~~~~lqt~L~hll~~~alFDpel~vRr~a~Aal~E~iGR 417 (993)
T COG5234 367 FVWSFYRCYSKSAIEGLQTNLIHLLLQTALFDPELNVRRAATAALFEVIGR 417 (993)
T ss_pred eeeeeeeccccccchhHHHHHHHHHHhhhhcCchhhhhhHHHHHHHHHhcc
Confidence 55554332111 1233334455555 77899999999999888777654
No 300
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=85.44 E-value=15 Score=28.30 Aligned_cols=38 Identities=16% Similarity=0.219 Sum_probs=27.5
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhH
Q 009632 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF 433 (530)
Q Consensus 396 ~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~ 433 (530)
+.++..+.+.+.+++|.+..-++..+..+.+..|..+.
T Consensus 36 ~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~ 73 (115)
T cd00197 36 KEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFH 73 (115)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHH
Confidence 45666666666777888888888888888887776553
No 301
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=85.31 E-value=21 Score=31.89 Aligned_cols=112 Identities=13% Similarity=0.127 Sum_probs=58.6
Q ss_pred hhhccHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHhCCcc----cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHh-h
Q 009632 238 CVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVGPEP----TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI-L 311 (530)
Q Consensus 238 ~~~~~~~~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~-~ 311 (530)
+.-++.|++....+.. -+..|.+....+|.+.+.-..+. ....++|.+++.++-.+.-.+..|..-+..+... .
T Consensus 92 iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~dd~ 171 (262)
T PF04078_consen 92 IPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKILLDDV 171 (262)
T ss_dssp GGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHHSHH
T ss_pred chhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHcchh
Confidence 3455778776666553 36788888888888776322222 1346889998888777666666666666655432 1
Q ss_pred CH-------H---HHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccc
Q 009632 312 NP-------E---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL 349 (530)
Q Consensus 312 ~~-------~---~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~ 349 (530)
|- + .+...+-..+..+.+++++|.-..++++...++..
T Consensus 172 GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdn 219 (262)
T PF04078_consen 172 GLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDN 219 (262)
T ss_dssp HHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTS
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccC
Confidence 11 1 11112222223344555555555555555555543
No 302
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=84.10 E-value=41 Score=32.32 Aligned_cols=226 Identities=14% Similarity=0.092 Sum_probs=123.6
Q ss_pred hHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc-hhhhhccHHHH--HHhcCC-CCHHHHHHHHHHHHHHHHHh-C
Q 009632 199 LKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP-QDCVAHILPVI--VNFSQD-KSWRVRYMVANQLYELCEAV-G 273 (530)
Q Consensus 199 ~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~~~~l--~~~~~d-~~~~vr~~~~~~l~~l~~~~-~ 273 (530)
.+..+.+.+...+-+++.+||.++.+.+..+...... ..+.+.=++++ ..+..| ++..=|..|.+.+..+...- |
T Consensus 22 ~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~ 101 (371)
T PF14664_consen 22 VLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKG 101 (371)
T ss_pred hHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCC
Confidence 3444555555444444599999999999877654321 11122112222 123333 34567889999988888763 2
Q ss_pred CcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHH
Q 009632 274 PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD 353 (530)
Q Consensus 274 ~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~ 353 (530)
.......++..+....+++++..|..|++.+.+++-.-+.-.....-+..+.+.+.|....+-..++.++-.+...-...
T Consensus 102 ~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR 181 (371)
T PF14664_consen 102 PKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTR 181 (371)
T ss_pred cccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchh
Confidence 33334567788888888999999999999999887543222222233444444444444445555555555554322111
Q ss_pred ------HHHHhHHHHHHHh----hcCCCh-HHHHHHHHhhHHhhhhh------chhHHHhhHHHHHHHHhcCCChHHHHH
Q 009632 354 ------ATIEQLLPIFLSL----LKDEFP-DVRLNIISKLDQVNQVI------GIDLLSQSLLPAIVELAEDRHWRVRLA 416 (530)
Q Consensus 354 ------~~~~~l~~~l~~~----l~d~~~-~vr~~a~~~l~~l~~~~------~~~~~~~~l~~~l~~~~~~~~~~~R~~ 416 (530)
.-.+.++..+... .+++.. +.-..+..++..+.+.- +.+.+ .-+..+...+.-++..+|..
T Consensus 182 ~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~--~~lksLv~~L~~p~~~ir~~ 259 (371)
T PF14664_consen 182 KYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDF--RGLKSLVDSLRLPNPEIRKA 259 (371)
T ss_pred hhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCc--hHHHHHHHHHcCCCHHHHHH
Confidence 1122222222222 222221 23333334444443321 11111 34555666777888889999
Q ss_pred HHHHHHHHHh
Q 009632 417 IIEYIPLLAS 426 (530)
Q Consensus 417 ~~~~l~~l~~ 426 (530)
.+..+-.+..
T Consensus 260 Ildll~dllr 269 (371)
T PF14664_consen 260 ILDLLFDLLR 269 (371)
T ss_pred HHHHHHHHHC
Confidence 8888877755
No 303
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=83.80 E-value=18 Score=28.07 Aligned_cols=38 Identities=11% Similarity=-0.012 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhc
Q 009632 158 DILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVE 195 (530)
Q Consensus 158 ~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~ 195 (530)
.....++...+.+-++++++.|+..++..|..++...+
T Consensus 33 ~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~ 70 (122)
T cd03572 33 VGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGN 70 (122)
T ss_pred HHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCC
Confidence 34567888888888889999999999999999887654
No 304
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=83.72 E-value=9.8 Score=27.49 Aligned_cols=68 Identities=13% Similarity=0.114 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhh-cCCCChhHHHHHHHHHHHHHhhhcch--hhHHHHHHHHHHhhcCCchhHHHHHHHHHH
Q 009632 160 LKTELRSIYTQL-CQDDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQDDQDSVRLLAVEGCA 227 (530)
Q Consensus 160 ~~~~l~~~l~~l-~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~ 227 (530)
.++.++..+..+ .+.++..||...+.++..+....+.. .-++.++..+.....|+++.+-..|.+++.
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 556677777776 45568899999999999998876652 235667777777778777777666666553
No 305
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=83.69 E-value=21 Score=28.69 Aligned_cols=98 Identities=14% Similarity=0.220 Sum_probs=64.1
Q ss_pred hcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHHhChhHHh----hhhHHH-
Q 009632 406 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGPEWAM----QHITPQ- 479 (530)
Q Consensus 406 ~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~-d~~~~Vr~~a~~~l~~l~~~~~~~~~~----~~i~~~- 479 (530)
+.+++|..-...+..+.. +..|+ ...+..+.+-+. .+++.|...|+..+..+++++|..+.. ..++..
T Consensus 14 l~~~dw~~ileicD~In~--~~~~~----k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~ 87 (141)
T cd03565 14 LQSEDWGLNMEICDIINE--TEDGP----KDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDV 87 (141)
T ss_pred CCCcCHHHHHHHHHHHhC--CCCcH----HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHH
Confidence 345577655555555532 22232 234445555555 467888888888888888888877543 456665
Q ss_pred HHhhccC---CChHHHHHHHHHHHHHhhhcChH
Q 009632 480 VLEMINN---PHYLYRMTILRAISLLAPVMGSE 509 (530)
Q Consensus 480 l~~~~~d---~~~~vr~~a~~~l~~i~~~~~~~ 509 (530)
|.+++++ .+..|+..++..+..+...++.+
T Consensus 88 L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~~~ 120 (141)
T cd03565 88 LVKLINPKNNPPTIVQEKVLALIQAWADAFRGS 120 (141)
T ss_pred HHHHHcccCCCcHHHHHHHHHHHHHHHHHhCCC
Confidence 6776653 34588999999999888877644
No 306
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=83.34 E-value=22 Score=28.53 Aligned_cols=72 Identities=11% Similarity=-0.029 Sum_probs=48.8
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchh----hHHHHHHHHHHhhcC------CchhHHHHHHHHHHHHhhh
Q 009632 163 ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH----LKTDIMSIFEDLTQD------DQDSVRLLAVEGCAALGKL 232 (530)
Q Consensus 163 ~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~~~d------~~~~vr~~a~~~l~~l~~~ 232 (530)
+.+..+.+-+++.++.|...|+..|..+.+++|... ....++.-+.+++.+ ....|+...++.+...+..
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLE 117 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 344445566678888888888888888888888732 234455666666643 3567888877777776665
Q ss_pred cC
Q 009632 233 LE 234 (530)
Q Consensus 233 ~~ 234 (530)
++
T Consensus 118 f~ 119 (139)
T cd03567 118 LP 119 (139)
T ss_pred hc
Confidence 54
No 307
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=82.31 E-value=47 Score=31.67 Aligned_cols=89 Identities=12% Similarity=0.141 Sum_probs=44.0
Q ss_pred HHHHHHHHHHh--cCCcHHHHHHHHHHHHHHHHHhC---hhHHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcChH
Q 009632 435 DKLGALCMQWL--QDKVYSIRDAAANNLKRLAEEFG---PEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE 509 (530)
Q Consensus 435 ~~~~~~l~~~l--~d~~~~Vr~~a~~~l~~l~~~~~---~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~~ 509 (530)
+.+.|.+++++ -++.+.+|..+...+..+..... .....+.+.+.+..+..+--...-....+.+..++..- .
T Consensus 255 ~~~lp~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~~~~~~~~~~~l~s~lrsfvqk~l~~~t~~~f~~l~~vA~l~--p 332 (373)
T PF14911_consen 255 RLVLPSLLECLMLVNEEPQVKKLATELLQYMVESCQVGSSGEPREQLTSVLRSFVQKYLAHYTYQYFQFLEKVAELD--P 332 (373)
T ss_pred HHhhHHHHHHHhhcCCCcchhHHHHHHHHHHHHcccccCcchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhC--H
Confidence 44555555543 35578889999998888887653 11122333444443333322222222334444443321 1
Q ss_pred HHHhhHHHHHHhhccC
Q 009632 510 ITCSRLLPVVINASKD 525 (530)
Q Consensus 510 ~~~~~~~p~l~~~l~D 525 (530)
.+...++|.+.+.+.|
T Consensus 333 ~lV~~Lip~i~q~l~~ 348 (373)
T PF14911_consen 333 QLVISLIPTIRQSLKD 348 (373)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 2345556666555443
No 308
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=81.88 E-value=40 Score=30.53 Aligned_cols=137 Identities=16% Similarity=0.231 Sum_probs=78.6
Q ss_pred hHHHHHHhcCCCc----HHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHH-HHHHHHhhccccCHHHH
Q 009632 281 LVPAYVRLLRDNE----AEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSA-LASVIMGMAPLLGKDAT 355 (530)
Q Consensus 281 l~~~l~~~l~d~~----~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~-~~~~l~~l~~~~~~~~~ 355 (530)
.+|.++..+.++. ..-...++..+..+++.-+...+ ..++..+ .+.+. +-+.. ..+.+..+.+.+.++ +
T Consensus 112 ~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~~~~L-a~il~~y---a~~~f-r~~~dfl~~v~~~l~~~f~P~-~ 185 (262)
T PF14225_consen 112 LLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQGLPNL-ARILSSY---AKGRF-RDKDDFLSQVVSYLREAFFPD-H 185 (262)
T ss_pred HHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCCCccH-HHHHHHH---HhcCC-CCHHHHHHHHHHHHHHHhCch-h
Confidence 4677777777666 13334566888888866554433 2222222 23222 22222 222333344444322 2
Q ss_pred HHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh-HHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 009632 356 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID-LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 426 (530)
Q Consensus 356 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~ 426 (530)
..+++-++..+|.++...+|..++..+..+....... ....+++..+.++++.+.|. .|++.+..+..
T Consensus 186 ~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~~~~dlispllrlL~t~~~~---eAL~VLd~~v~ 254 (262)
T PF14225_consen 186 EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSPHGADLISPLLRLLQTDLWM---EALEVLDEIVT 254 (262)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCCcchHHHHHHHHHhCCccHH---HHHHHHHHHHh
Confidence 3456777888888888999999999888887664322 12345677777888777775 44444444443
No 309
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=81.36 E-value=66 Score=32.71 Aligned_cols=145 Identities=12% Similarity=0.035 Sum_probs=84.3
Q ss_pred HhHhccCCcH--HHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhh--------cCCChHHHHHHHHhhHHhhhhhchhH
Q 009632 324 VKELSSDSSQ--HVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL--------KDEFPDVRLNIISKLDQVNQVIGIDL 393 (530)
Q Consensus 324 l~~~~~d~~~--~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l--------~d~~~~vr~~a~~~l~~l~~~~~~~~ 393 (530)
+...+.+++| .---..+.++++++.++..+.-...++.++..+| +|+..-|-....-..|+.-..+...|
T Consensus 486 larq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMyvvGQYpRFLkahw 565 (1053)
T COG5101 486 LARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMYVVGQYPRFLKAHW 565 (1053)
T ss_pred HHHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecceeeeeccchHHHHHHH
Confidence 3333455655 4556777788888776654322222222222222 34433333333333333333333333
Q ss_pred -HHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChh----------hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 009632 394 -LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG----------FFDDKLGALCMQWLQDKVYSIRDAAANNLKR 462 (530)
Q Consensus 394 -~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~----------~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~ 462 (530)
+.+.++..+.+++...+..+.-.||..+-.+++.+... .|...++..+.+.-.|-.++=.....+++|.
T Consensus 566 ~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~dL~pqQ~htfYeAcg~ 645 (1053)
T COG5101 566 SFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTGDLEPQQKHTFYEACGM 645 (1053)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcccCChHHHhHHHHHHhH
Confidence 33566777778888888999999999999998877543 3445566666666667666656666677777
Q ss_pred HHHHhC
Q 009632 463 LAEEFG 468 (530)
Q Consensus 463 l~~~~~ 468 (530)
+.+...
T Consensus 646 vIse~p 651 (1053)
T COG5101 646 VISEVP 651 (1053)
T ss_pred HHhccc
Confidence 666543
No 310
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=80.94 E-value=23 Score=27.21 Aligned_cols=38 Identities=13% Similarity=-0.016 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcch
Q 009632 160 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA 197 (530)
Q Consensus 160 ~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~ 197 (530)
...++...+.+-+.+++|.+...++..|..+.++.++.
T Consensus 34 ~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~ 71 (115)
T cd00197 34 GPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGER 71 (115)
T ss_pred cHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHH
Confidence 34556667777777788999999999998888887764
No 311
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=80.45 E-value=25 Score=27.32 Aligned_cols=71 Identities=15% Similarity=0.140 Sum_probs=39.5
Q ss_pred hhhccHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhCCcccccchHHH-HHHhcCCCcHHH-HHHHHHHHHHHHHhh
Q 009632 238 CVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEPTRMDLVPA-YVRLLRDNEAEV-RIAAAGKVTKFCRIL 311 (530)
Q Consensus 238 ~~~~~~~~l~~~~~-d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~-l~~~l~d~~~~v-r~~a~~~l~~~~~~~ 311 (530)
+...++|.+...+. ....+.|.+++..++.++....-. +.++.. +...+++..+.- ...++-++..+++.-
T Consensus 3 ~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~---~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 3 ILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLS---DEVLNALMESILKNWTQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCc---HHHHHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence 34557777777777 666777887777777777654321 122222 222233322222 356666677666544
No 312
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=80.07 E-value=89 Score=33.44 Aligned_cols=113 Identities=15% Similarity=0.099 Sum_probs=63.3
Q ss_pred HHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHH--hhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChh
Q 009632 354 ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS--QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 431 (530)
Q Consensus 354 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~--~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~ 431 (530)
...+.++..+...+..++...-...+.++..+........-. +.+-+.. ...++.--.++....+.++.++.. +++
T Consensus 437 ~~~~~lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~~~~~~~~~~-~~~N~~~~~~~~~~~~il~rls~~-~~~ 514 (727)
T PF12726_consen 437 RISPNLWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKKEKDELDPAK-TQFNKSLGQITDLISQILERLSDF-DPS 514 (727)
T ss_pred hhhHHHHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcccccCcchHH-HHHHHHHHHHHHHHHHHHHHHhcC-CHH
Confidence 455667777777777777766666666666554432111000 0111111 111122234556666666666654 333
Q ss_pred hHH-----HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC
Q 009632 432 FFD-----DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG 468 (530)
Q Consensus 432 ~~~-----~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~ 468 (530)
... ......+..++-.+..+++.+|...++......|
T Consensus 515 ~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~ 556 (727)
T PF12726_consen 515 HLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDG 556 (727)
T ss_pred HHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCc
Confidence 221 2344566777788999999999999998875433
No 313
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=79.89 E-value=26 Score=34.61 Aligned_cols=169 Identities=7% Similarity=0.049 Sum_probs=105.5
Q ss_pred HhHHHHHHHhhcCCChHHHHHHHHhhHHhh---hhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhh-
Q 009632 357 EQLLPIFLSLLKDEFPDVRLNIISKLDQVN---QVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF- 432 (530)
Q Consensus 357 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~---~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~- 432 (530)
..+...++++|.+++..+.--+...+.+.. ..+|...+...++..+.+++.+++...|....+.+..+.-......
T Consensus 430 ~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ek 509 (743)
T COG5369 430 YPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEK 509 (743)
T ss_pred cchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhh
Confidence 356777888888865555444433333322 2234455667889999988888777888888888877765554431
Q ss_pred ---HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCh-hHH---------hhhhHHHHHhhccCCChHHHHHHHHHH
Q 009632 433 ---FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP-EWA---------MQHITPQVLEMINNPHYLYRMTILRAI 499 (530)
Q Consensus 433 ---~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~-~~~---------~~~i~~~l~~~~~d~~~~vr~~a~~~l 499 (530)
....=+.-++.+.+|+.+.|....++.+..+.-.... +.. ...+...+.+.+...|+-.-+-.+..+
T Consensus 510 f~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~~~yil 589 (743)
T COG5369 510 FKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILEGCYIL 589 (743)
T ss_pred hhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhhhhHHHH
Confidence 2222345577888999999999999998887532111 110 123455555555555554444446666
Q ss_pred HHHhhhcC--------hHHHHhhHHHHHHhhccC
Q 009632 500 SLLAPVMG--------SEITCSRLLPVVINASKD 525 (530)
Q Consensus 500 ~~i~~~~~--------~~~~~~~~~p~l~~~l~D 525 (530)
.+++-.-+ .+++...+..+|.+...+
T Consensus 590 v~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r 623 (743)
T COG5369 590 VRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGR 623 (743)
T ss_pred HHHHhccchHHHHHHhHHHHHHHHHHHHHHHccc
Confidence 66554322 455677778888887776
No 314
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=79.88 E-value=3.4 Score=22.60 Aligned_cols=29 Identities=28% Similarity=0.356 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHhhhcChHHHHhhHHHHHHhhccCC
Q 009632 490 LYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDR 526 (530)
Q Consensus 490 ~vr~~a~~~l~~i~~~~~~~~~~~~~~p~l~~~l~D~ 526 (530)
.+|..++++++++.. +...|.|.++++|+
T Consensus 2 ~vR~~aa~aLg~~~~--------~~a~~~L~~~l~d~ 30 (30)
T smart00567 2 LVRHEAAFALGQLGD--------EEAVPALIKALEDE 30 (30)
T ss_pred HHHHHHHHHHHHcCC--------HhHHHHHHHHhcCC
Confidence 466667777776522 33455666666553
No 315
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=79.74 E-value=40 Score=29.28 Aligned_cols=134 Identities=16% Similarity=0.115 Sum_probs=77.7
Q ss_pred cchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcC-Cccch-hHHHHhHhhhhcCCCChHHHHH
Q 009632 86 VLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAG-EWFTA-RVSACGLFHIAYPSAPDILKTE 163 (530)
Q Consensus 86 ~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~-~~~~~-r~~~~~~l~~l~~~~~~~~~~~ 163 (530)
....+...+.+++.-+.|..|+..+...-+..+.+. ++.+..++.+ ++|.+ =..+...++.+... .+.
T Consensus 46 ~~~~l~~~Lw~~~~~E~r~~al~~l~~~~~~~~~~~-----~~~~~~~l~~~~~Wd~vD~~~~~i~g~~~~~-----~~~ 115 (208)
T cd07064 46 ELWELVLELWQQPEREYQYVAIDLLRKYKKFLTPED-----LPLLEELITTKSWWDTVDSLAKVVGGILLAD-----YPE 115 (208)
T ss_pred HHHHHHHHHHcchHHHHHHHHHHHHHHHHhcCCHHH-----HHHHHHHHcCCchHHHHHHHHHHHhHHHHhC-----Chh
Confidence 444555566777777888888877777655554443 2333333333 23332 22333333433222 123
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhc
Q 009632 164 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLL 233 (530)
Q Consensus 164 l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~ 233 (530)
..+.+.....|++.-+|+.|+-+.-.+.+. ...+.+...+...+.|++..|+++.--.|..+++.-
T Consensus 116 ~~~~l~~W~~s~~~W~rR~ai~~~l~~~~~----~~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d 181 (208)
T cd07064 116 FEPVMDEWSTDENFWLRRTAILHQLKYKEK----TDTDLLFEIILANLGSKEFFIRKAIGWALREYSKTN 181 (208)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHc----cCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccC
Confidence 356666777777766666666543333332 223556677777888888889998888888877653
No 316
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.44 E-value=76 Score=32.29 Aligned_cols=73 Identities=22% Similarity=0.364 Sum_probs=46.2
Q ss_pred HHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHH--HHHHHHHHHHHhhhC
Q 009632 356 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVR--LAIIEYIPLLASQLG 429 (530)
Q Consensus 356 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R--~~~~~~l~~l~~~~~ 429 (530)
...+..+++..|+++-..+-.++...+..+.+.+..+.. ..++..+.+++.|..-..| ..+++..-.+...-|
T Consensus 458 LkiVFtiYFrILkn~~~tll~~vlEGlakf~h~invef~-~dll~vlk~ll~d~~~~~re~l~cvqtaf~IlS~qg 532 (704)
T KOG2153|consen 458 LKIVFTIYFRILKNDRYTLLGAVLEGLAKFAHLINVEFL-GDLLKVLKELLEDIELSYREALLCVQTAFCILSGQG 532 (704)
T ss_pred HHHHHHHHHHHHhcchhhHHHHHHhhHHHHhhhccHHHh-hhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccc
Confidence 455667777888877666777777777777776655543 5677778888888744444 444444444444333
No 317
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=79.00 E-value=14 Score=29.69 Aligned_cols=82 Identities=20% Similarity=0.272 Sum_probs=47.1
Q ss_pred cchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHh
Q 009632 279 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQ 358 (530)
Q Consensus 279 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ 358 (530)
+.+-..+..++.+++++|++.|++++-..-.. .....-+.+..+++|.. .|.........-....-.+...+.
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~k~~-----~l~pY~d~L~~Lldd~~--frdeL~~f~~~~~~~~I~~ehR~~ 88 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLTWKDP-----YLTPYKDNLENLLDDKT--FRDELTTFNLSDESSVIEEEHRPE 88 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH-----HHHhHHHHHHHHcCcch--HHHHHHhhcccCCcCCCCHHHHhH
Confidence 45667788999999999999999998876431 11233445566666653 444443332211111111344556
Q ss_pred HHHHHHHhh
Q 009632 359 LLPIFLSLL 367 (530)
Q Consensus 359 l~~~l~~~l 367 (530)
++|+++.+|
T Consensus 89 l~pvvlRIL 97 (141)
T PF07539_consen 89 LMPVVLRIL 97 (141)
T ss_pred HHHHHHHHH
Confidence 666666655
No 318
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=78.86 E-value=97 Score=33.17 Aligned_cols=136 Identities=16% Similarity=0.124 Sum_probs=75.8
Q ss_pred hhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhh---hcchhh----HHHHHHHHHHh-hc
Q 009632 141 ARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAAT---VEPAHL----KTDIMSIFEDL-TQ 212 (530)
Q Consensus 141 ~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~---~~~~~~----~~~l~~~l~~~-~~ 212 (530)
.|......+..+.........+.++|.+..++-|.++.+|+.|...+..+... +..+.+ .+.+...+... -.
T Consensus 98 l~~~F~~~f~~~~~~~~~~~~~~~lPG~~~~Lf~~~~~~r~WA~~~~~~l~~~~~~~t~~~~~~av~~~l~~~l~~i~~~ 177 (727)
T PF12726_consen 98 LRELFDAIFSSLQSKKPLKLPKELLPGMTYFLFDGNPERRRWAERWWQRLKRPPYSITDEEFDWAVLDELSSHLYRISPN 177 (727)
T ss_pred HHHHHHHHHHHHhccCCccccccccchhhhhhhcCCHHHHHHHHHHHHHcCCCccCCchhhhhHHHHHHHHHHHHHhccC
Confidence 44444444444443322222267788888888899999999999999998764 344333 23344444444 11
Q ss_pred CCchhHHHHHHHHHHHHhhhcCchhhhhc--------cHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcc
Q 009632 213 DDQDSVRLLAVEGCAALGKLLEPQDCVAH--------ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP 276 (530)
Q Consensus 213 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~--------~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~ 276 (530)
..++..-..-...+..+.+.++++.+... +...+...+.+.....-....+++..+.+.+|.++
T Consensus 178 ~~~~~~~~~fW~g~~~Il~~ld~~~i~~~l~~~~~~~i~~L~~~hL~~~~~~~l~~lL~~l~~lL~k~~~~F 249 (727)
T PF12726_consen 178 NYNPDSVIRFWSGFSLILRLLDKEQITHSLRALELDPIYRLLLNHLSSNLSPPLPILLRCLSILLEKLGSDF 249 (727)
T ss_pred CCChhHHHHHHHHHHHHHHHccHHHHHHHHhccccchHHHHHHHHhhcccchhHHHHHHHHHHHHHhCHHHH
Confidence 12333333345556666666666433221 33344445555434445566677777777665443
No 319
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=78.63 E-value=51 Score=29.83 Aligned_cols=140 Identities=16% Similarity=0.230 Sum_probs=84.7
Q ss_pred hHHHHHHHhhcCCC-----hHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHH-HHHHHHhhhChh
Q 009632 358 QLLPIFLSLLKDEF-----PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIE-YIPLLASQLGVG 431 (530)
Q Consensus 358 ~l~~~l~~~l~d~~-----~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~-~l~~l~~~~~~~ 431 (530)
..+|.+...+.+++ ..++ .+++.++.+++..|.. .+-..+..+.+.. ++.+...+. .+..+...+.++
T Consensus 111 a~LP~ll~~~d~~~~i~~~~~~~-~~A~~La~~a~~~~~~----~La~il~~ya~~~-fr~~~dfl~~v~~~l~~~f~P~ 184 (262)
T PF14225_consen 111 ALLPRLLHAFDDPNPIQPDQECI-EIAEALAQVAEAQGLP----NLARILSSYAKGR-FRDKDDFLSQVVSYLREAFFPD 184 (262)
T ss_pred HHHHHHHHHhcccccccccHHHH-HHHHHHHHHHHhCCCc----cHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhCch
Confidence 45677777777666 3444 5557788887654433 3333333343333 333333222 223344333333
Q ss_pred hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhH-HhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcC
Q 009632 432 FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW-AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG 507 (530)
Q Consensus 432 ~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~-~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~ 507 (530)
+ ...++-.++.++..+...+|..+.+++..+......+. ...+++..+.++++.+.+. .|++.+..+....|
T Consensus 185 ~-~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~~~~dlispllrlL~t~~~~---eAL~VLd~~v~~s~ 257 (262)
T PF14225_consen 185 H-EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSPHGADLISPLLRLLQTDLWM---EALEVLDEIVTRSG 257 (262)
T ss_pred h-HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCCcchHHHHHHHHHhCCccHH---HHHHHHHHHHhhcc
Confidence 2 23466778888988999999999999999988763221 2356788888888877665 36666666655444
No 320
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=78.56 E-value=4.3 Score=23.97 Aligned_cols=28 Identities=18% Similarity=0.143 Sum_probs=18.2
Q ss_pred hHHHHHhhccCCChHHHHHHHHHHHHHh
Q 009632 476 ITPQVLEMINNPHYLYRMTILRAISLLA 503 (530)
Q Consensus 476 i~~~l~~~~~d~~~~vr~~a~~~l~~i~ 503 (530)
.+|.+.+++.+++.+++..+++++.+++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 5666666666666667777777766654
No 321
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=77.36 E-value=81 Score=31.46 Aligned_cols=29 Identities=24% Similarity=0.557 Sum_probs=25.1
Q ss_pred cHHHHHHHhcChhHHHHHHHhhcHHHHHH
Q 009632 10 PIAVLIDELKNDDIQLRLNSIRRLSTIAR 38 (530)
Q Consensus 10 ~~~~l~~~l~~~~~~~R~~a~~~l~~~~~ 38 (530)
++..+++.++++|+..-.+++..|..+.+
T Consensus 48 dLellVeriqd~d~~l~~~sLn~Lkevik 76 (881)
T COG5110 48 DLELLVERIQDPDIDLQNNSLNMLKEVIK 76 (881)
T ss_pred cHHHHHHHhhCCChHHHHHHHHHHHHHHh
Confidence 56788999999999999999999988754
No 322
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=77.23 E-value=4.9 Score=23.69 Aligned_cols=27 Identities=19% Similarity=0.053 Sum_probs=16.0
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHH
Q 009632 437 LGALCMQWLQDKVYSIRDAAANNLKRL 463 (530)
Q Consensus 437 ~~~~l~~~l~d~~~~Vr~~a~~~l~~l 463 (530)
.+|.+.+++.+++..++..++.+|..+
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl 39 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNL 39 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 455555555555666666666666554
No 323
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.29 E-value=81 Score=30.90 Aligned_cols=110 Identities=11% Similarity=0.029 Sum_probs=69.4
Q ss_pred HHhHhhhhcCCCChH---HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhh--HHHHHHHHHHhhcCCchhHH
Q 009632 145 ACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHL--KTDIMSIFEDLTQDDQDSVR 219 (530)
Q Consensus 145 ~~~~l~~l~~~~~~~---~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~--~~~l~~~l~~~~~d~~~~vr 219 (530)
|..++..+++...-+ ..+.++..+.+.++-++...-..+...|..+.-...+... ...++..+.++..-..++.|
T Consensus 283 a~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~dL~ 362 (791)
T KOG1222|consen 283 AVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHPDLR 362 (791)
T ss_pred HHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCHHHH
Confidence 444555555555543 4567778888877766666666666666655544333222 23477778888887888888
Q ss_pred HHHHHHHHHHhhhcC--chhhhhccHHHHHHhcCCCC
Q 009632 220 LLAVEGCAALGKLLE--PQDCVAHILPVIVNFSQDKS 254 (530)
Q Consensus 220 ~~a~~~l~~l~~~~~--~~~~~~~~~~~l~~~~~d~~ 254 (530)
...+..+-.++---| +......++|.+..++.+..
T Consensus 363 ~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~ 399 (791)
T KOG1222|consen 363 KATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDT 399 (791)
T ss_pred HHHHHHhhhccccccccHHHhhccchHHHHHHhCCcc
Confidence 888888877764332 23334557888888777653
No 324
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=76.12 E-value=52 Score=28.60 Aligned_cols=131 Identities=14% Similarity=0.017 Sum_probs=59.7
Q ss_pred HHHHHHHHhcCCccchhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcC-CCChhHHHHHH-HHHHHHHhhhcchhhHHHH
Q 009632 126 YIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQ-DDMPMVRRSAA-SNLGKFAATVEPAHLKTDI 203 (530)
Q Consensus 126 l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~-d~~~~vR~~a~-~~l~~l~~~~~~~~~~~~l 203 (530)
...++..+.+++..+.|..++..+.......++...+ .+...+. -.+|.+-...+ ..++.+... .+.+
T Consensus 47 ~~~l~~~Lw~~~~~E~r~~al~~l~~~~~~~~~~~~~----~~~~~l~~~~~Wd~vD~~~~~i~g~~~~~------~~~~ 116 (208)
T cd07064 47 LWELVLELWQQPEREYQYVAIDLLRKYKKFLTPEDLP----LLEELITTKSWWDTVDSLAKVVGGILLAD------YPEF 116 (208)
T ss_pred HHHHHHHHHcchHHHHHHHHHHHHHHHHhcCCHHHHH----HHHHHHcCCchHHHHHHHHHHHhHHHHhC------ChhH
Confidence 3344445555565566777776665554444443322 2222222 13454433322 222332221 1223
Q ss_pred HHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 009632 204 MSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCE 270 (530)
Q Consensus 204 ~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~ 270 (530)
.+.+.+...|++.=.|..|+-+.-...+.. -.+.+...+..++.|++.-|+.++...|..++.
T Consensus 117 ~~~l~~W~~s~~~W~rR~ai~~~l~~~~~~----~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k 179 (208)
T cd07064 117 EPVMDEWSTDENFWLRRTAILHQLKYKEKT----DTDLLFEIILANLGSKEFFIRKAIGWALREYSK 179 (208)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHcc----CHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhc
Confidence 455555666665555555444332222221 123344455555556656666666666655553
No 325
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=74.65 E-value=13 Score=36.58 Aligned_cols=108 Identities=12% Similarity=0.167 Sum_probs=76.0
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHh---hhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHH-
Q 009632 397 SLLPAIVELAEDRHWRVRLAIIEYIPLLAS---QLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA- 472 (530)
Q Consensus 397 ~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~---~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~- 472 (530)
.+...|.+.+++|.-.+...+...+....- .+|..+....++..+.+.+..++...|......+..+.-...++..
T Consensus 431 ~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ekf 510 (743)
T COG5369 431 PIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKF 510 (743)
T ss_pred chHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhhh
Confidence 456667777788765555554444443322 2356667788999999999988889999999988877655543311
Q ss_pred ---hhhhHHHHHhhccCCChHHHHHHHHHHHHHhh
Q 009632 473 ---MQHITPQVLEMINNPHYLYRMTILRAISLLAP 504 (530)
Q Consensus 473 ---~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~ 504 (530)
...=+..+..+.+||++.|+...++.+.++.=
T Consensus 511 ~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc 545 (743)
T COG5369 511 KFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTC 545 (743)
T ss_pred hhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccc
Confidence 12225567788999999999999999998753
No 326
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=74.43 E-value=35 Score=32.23 Aligned_cols=34 Identities=18% Similarity=0.025 Sum_probs=16.5
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh
Q 009632 437 LGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE 470 (530)
Q Consensus 437 ~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~ 470 (530)
.+..+.+-++..++.|...|+..++.++..+|..
T Consensus 46 ~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~ 79 (462)
T KOG2199|consen 46 CLKAIMKRLNHKDPHVVLQALTLLDACVANCGKR 79 (462)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchH
Confidence 3444444444455555555555555555555443
No 327
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=74.15 E-value=28 Score=32.77 Aligned_cols=74 Identities=11% Similarity=0.006 Sum_probs=36.9
Q ss_pred HHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCch----hhhhccHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhCCcc
Q 009632 203 IMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ----DCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEP 276 (530)
Q Consensus 203 l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~~~~~l~~~~~-d~~~~vr~~~~~~l~~l~~~~~~~~ 276 (530)
.+..+.+.++..++.|...|+..+..+...+|+. .-...+...+..++. ...++|+......+...++.+.++.
T Consensus 46 ~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~Dp 124 (462)
T KOG2199|consen 46 CLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFKKDP 124 (462)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccCc
Confidence 4444555555555555555555555555555541 112234444444444 3345555555555555555444443
No 328
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.86 E-value=43 Score=33.08 Aligned_cols=99 Identities=15% Similarity=0.159 Sum_probs=72.0
Q ss_pred HHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHH----hhhhHHH
Q 009632 404 ELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA----MQHITPQ 479 (530)
Q Consensus 404 ~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~----~~~i~~~ 479 (530)
..+.+++|..-...|..+-.-- .+ ....+-.+.+-+..+.+.|...|+..|-.+++.+|..+. ..++++.
T Consensus 12 ~~l~~pDWa~NleIcD~IN~~~--~~----~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~e 85 (470)
T KOG1087|consen 12 ESLAEPDWALNLEICDLINSTE--GG----PKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNE 85 (470)
T ss_pred ccccCccHHHHHHHHHHHhcCc--cC----cHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3456778876666555553211 11 125667788888888889999999999889999987754 3667777
Q ss_pred HHhhcc-C-CChHHHHHHHHHHHHHhhhcCh
Q 009632 480 VLEMIN-N-PHYLYRMTILRAISLLAPVMGS 508 (530)
Q Consensus 480 l~~~~~-d-~~~~vr~~a~~~l~~i~~~~~~ 508 (530)
+..... . ++..||..++..|..+.+.++.
T Consensus 86 mVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 86 MVKRPKNKPRDLKVREKILELIDTWQQAFCG 116 (470)
T ss_pred HHhccccCCcchhHHHHHHHHHHHHHHHccC
Confidence 777654 3 5788999999999999888775
No 329
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=73.75 E-value=92 Score=30.34 Aligned_cols=142 Identities=18% Similarity=0.156 Sum_probs=82.5
Q ss_pred HHHhhhccc--chHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCC-ccchhHHHHhHhhhhcCCCChH----HHH
Q 009632 90 PLETLCTVE--ETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPDI----LKT 162 (530)
Q Consensus 90 ~l~~l~~d~--~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~-~~~~r~~~~~~l~~l~~~~~~~----~~~ 162 (530)
.|..+.+.+ +..||..|.+.|.++...-.-+.+...-+..+..+.+.. -+........+++.++++..+. ...
T Consensus 184 ~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~Lvaa 263 (832)
T KOG3678|consen 184 LLLRMFQAPNLETSVRVEAARLLEQILVAENRDRVARIGLGVILNLAKEREPVELARSVAGILEHMFKHSEETCQRLVAA 263 (832)
T ss_pred HHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhhHHhhccchhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHHHHhh
Confidence 344444443 457899999999888665444444333234444444332 3445556777788877776543 223
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcch----hhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhh
Q 009632 163 ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA----HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGK 231 (530)
Q Consensus 163 ~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~ 231 (530)
..+..++-.+.-.+|.+-+.++.+|++.+-+-+.+ .+...+-..+.-+....++-.|..|.-+...++.
T Consensus 264 ~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat 336 (832)
T KOG3678|consen 264 GGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLAT 336 (832)
T ss_pred cccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhh
Confidence 34455556677777888888888899887654432 1222233333334444456677776666655554
No 330
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=73.72 E-value=88 Score=30.10 Aligned_cols=69 Identities=16% Similarity=0.075 Sum_probs=50.4
Q ss_pred hHHHHHHHHhcCCC-hHHHHHHHHHHHHHHhhhChhh--HH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 009632 397 SLLPAIVELAEDRH-WRVRLAIIEYIPLLASQLGVGF--FD-DKLGALCMQWLQDKVYSIRDAAANNLKRLAE 465 (530)
Q Consensus 397 ~l~~~l~~~~~~~~-~~~R~~~~~~l~~l~~~~~~~~--~~-~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~ 465 (530)
+++..|..+++.++ +.+-..|++=++......+... .. -.-...++++++.++++||-.|+.++..+..
T Consensus 366 ellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 366 ELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 56777777776654 7777888888888887765432 11 1235678889999999999999999877653
No 331
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=72.08 E-value=9.9 Score=26.38 Aligned_cols=53 Identities=21% Similarity=0.207 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhh-hChhhHH-HHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHH
Q 009632 414 RLAIIEYIPLLASQ-LGVGFFD-DKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEE 466 (530)
Q Consensus 414 R~~~~~~l~~l~~~-~~~~~~~-~~~~~~l~~~l~-d~~~~Vr~~a~~~l~~l~~~ 466 (530)
+.+++.+++.++.. .|..++. ..+++.+.++.. .++..||-.+..+++-+.+.
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T 59 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST 59 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC
Confidence 34566666666554 3444433 245666665544 56667777777777766543
No 332
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=71.32 E-value=1.1e+02 Score=30.25 Aligned_cols=96 Identities=11% Similarity=0.037 Sum_probs=57.3
Q ss_pred ChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcCh
Q 009632 429 GVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS 508 (530)
Q Consensus 429 ~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~ 508 (530)
+++-|.+.+++.+... -...++|....+.|..++..+. ...-.+.|.+.+++.....+|.+....+....-...++
T Consensus 233 DpQ~fAEkLfk~~~~~--~er~E~klm~~~lisRliG~Hk--L~l~~fY~fl~~yl~phqrDvTqIl~~aaQa~Hd~VP~ 308 (616)
T KOG2229|consen 233 DPQGFAEKLFKQLLAC--KERFEVKLMLMKLISRLIGIHK--LFLFGFYPFLQRYLQPHQRDVTQILAAAAQASHDLVPP 308 (616)
T ss_pred ChhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHHhhhhH--HHHhhhHHHHHHHcCcchhhHHHHHHHHHHhccCCCCh
Confidence 4555666666666554 2335677777777666654432 12245788888888777666665544444444444556
Q ss_pred HHHHhhHHHHHHhhccCCCC
Q 009632 509 EITCSRLLPVVINASKDRYL 528 (530)
Q Consensus 509 ~~~~~~~~p~l~~~l~D~~~ 528 (530)
+...+-+..+.-.+.+|.+.
T Consensus 309 d~iEpl~k~Ian~FVtD~~s 328 (616)
T KOG2229|consen 309 DIIEPLLKTIANNFVTDENS 328 (616)
T ss_pred HHhhHHHHHHHHHhcccCCC
Confidence 65555555566667777664
No 333
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=71.00 E-value=3.2 Score=22.20 Aligned_cols=13 Identities=23% Similarity=0.322 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHh
Q 009632 491 YRMTILRAISLLA 503 (530)
Q Consensus 491 vr~~a~~~l~~i~ 503 (530)
||..+.++|+.+.
T Consensus 1 VR~~Aa~aLg~ig 13 (27)
T PF03130_consen 1 VRRAAARALGQIG 13 (27)
T ss_dssp HHHHHHHHHGGG-
T ss_pred CHHHHHHHHHHcC
Confidence 4555555555554
No 334
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.70 E-value=58 Score=32.24 Aligned_cols=97 Identities=10% Similarity=0.033 Sum_probs=64.2
Q ss_pred hcCCccchhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchh----hHHHHHHHHHH
Q 009632 134 AAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH----LKTDIMSIFED 209 (530)
Q Consensus 134 ~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~ 209 (530)
+.+++|..-...|..+..--.. -++....+.+.+.+.++.|...|+..|..+.+++|... ...++++-++.
T Consensus 14 l~~pDWa~NleIcD~IN~~~~~-----~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk 88 (470)
T KOG1087|consen 14 LAEPDWALNLEICDLINSTEGG-----PKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVK 88 (470)
T ss_pred ccCccHHHHHHHHHHHhcCccC-----cHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555322211 23566667777788888888888888888888888733 34456666666
Q ss_pred hhcCC--chhHHHHHHHHHHHHhhhcCc
Q 009632 210 LTQDD--QDSVRLLAVEGCAALGKLLEP 235 (530)
Q Consensus 210 ~~~d~--~~~vr~~a~~~l~~l~~~~~~ 235 (530)
+.... +..||..++..|....+.++.
T Consensus 89 ~~k~~~~~~~Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 89 RPKNKPRDLKVREKILELIDTWQQAFCG 116 (470)
T ss_pred ccccCCcchhHHHHHHHHHHHHHHHccC
Confidence 66554 456888888888887777665
No 335
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=69.55 E-value=17 Score=25.29 Aligned_cols=56 Identities=14% Similarity=0.217 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHH-hChhHHh-hhhHHHHHhhcc-CCChHHHHHHHHHHHHHhhhcCh
Q 009632 453 RDAAANNLKRLAEE-FGPEWAM-QHITPQVLEMIN-NPHYLYRMTILRAISLLAPVMGS 508 (530)
Q Consensus 453 r~~a~~~l~~l~~~-~~~~~~~-~~i~~~l~~~~~-d~~~~vr~~a~~~l~~i~~~~~~ 508 (530)
.++++.++|.+... .|-.+.. ..+++.+.++.. .+.+.+|-.+..+++-+......
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G 62 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEG 62 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHH
Confidence 46788889988764 3545444 478999888765 68999999999999999876543
No 336
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=69.16 E-value=72 Score=27.23 Aligned_cols=64 Identities=16% Similarity=0.136 Sum_probs=36.4
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccc
Q 009632 283 PAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL 349 (530)
Q Consensus 283 ~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~ 349 (530)
+.+..-..+++.-+|..+...+...... +...+.+++.+..+..|++..||.++...+..++..
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~---~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~ 171 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK---ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKK 171 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence 5556666666666666665555544433 111244555555666666666777666666665543
No 337
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=67.44 E-value=72 Score=26.52 Aligned_cols=95 Identities=14% Similarity=0.190 Sum_probs=65.5
Q ss_pred ChHHHHHHHHHHHHHHhhhChhhH------------HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHH--hhh
Q 009632 410 HWRVRLAIIEYIPLLASQLGVGFF------------DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA--MQH 475 (530)
Q Consensus 410 ~~~~R~~~~~~l~~l~~~~~~~~~------------~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~--~~~ 475 (530)
+...|.-+++.+..+....|..+. ...+.|.+.+.+..+...+-..+++++..+...++.... .+.
T Consensus 35 ~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~ 114 (168)
T PF12783_consen 35 DERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEV 114 (168)
T ss_pred hHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777665543222 255777777777666788888999999999988865432 244
Q ss_pred hHHHHHh-hccCC--ChHHHHHHHHHHHHHhh
Q 009632 476 ITPQVLE-MINNP--HYLYRMTILRAISLLAP 504 (530)
Q Consensus 476 i~~~l~~-~~~d~--~~~vr~~a~~~l~~i~~ 504 (530)
+++.+.. .+..+ ..+.|..+++++..++.
T Consensus 115 ~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 115 FLSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 5665555 44433 35789999999999986
No 338
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=67.44 E-value=60 Score=27.79 Aligned_cols=108 Identities=12% Similarity=0.003 Sum_probs=53.7
Q ss_pred hhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChh-hhhhhHHHHHHHHhcCCccc--hhHHHHhHhhhhcCCCC-hH
Q 009632 84 AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES-DLVDWYIPLVKRLAAGEWFT--ARVSACGLFHIAYPSAP-DI 159 (530)
Q Consensus 84 ~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~l~~~~~~~--~r~~~~~~l~~l~~~~~-~~ 159 (530)
...++.-+.+...++=+.||..|..++..+...-.+. ...+. .+.+..+...+... ........+..+.+-+. +.
T Consensus 5 ~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~~~~~~~~~ip~-~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL~~~~ 83 (193)
T PF12612_consen 5 VQQIIGGLLRQAAEKIDRVREVAGKCLQRLLHSQDPTIPHIPH-REELQDIFPSESEASLNWSSSSEYFPRLVKLLDLPE 83 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCc-HHHHHHHcccccccccccCCHHHHHHHHHHHhccHH
Confidence 4445555556666777899999999999988332120 00011 12223322222110 01112222222222222 24
Q ss_pred HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHh
Q 009632 160 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAA 192 (530)
Q Consensus 160 ~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~ 192 (530)
+...++..+......-+..+.+.+..+|-.++.
T Consensus 84 y~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~ 116 (193)
T PF12612_consen 84 YRYSLLSGLVVSAGGLTESLVRASSAALLSYLR 116 (193)
T ss_pred HHHHHHhHHHhcCCCCchhHHHHHHHHHHHHHH
Confidence 566666666666666666666666666666654
No 339
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=67.22 E-value=2.2e+02 Score=32.04 Aligned_cols=287 Identities=18% Similarity=0.186 Sum_probs=148.1
Q ss_pred HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhh-------c-----CCchhHHHHHHHHHH
Q 009632 160 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLT-------Q-----DDQDSVRLLAVEGCA 227 (530)
Q Consensus 160 ~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~-------~-----d~~~~vr~~a~~~l~ 227 (530)
.-.++...+..++...+..+|.++..+|+..-..+-+ ...+.+-+.+...- . -..+.+|......+.
T Consensus 193 SaR~LFk~ivPlLks~~~~~r~AaVlaLG~~n~~v~~-~LleeL~~~i~~~~~e~e~r~~~k~rr~Rrd~LR~ev~hVl~ 271 (1120)
T PF14228_consen 193 SARELFKLIVPLLKSESSSFRDAAVLALGSINLNVYR-TLLEELQSYIEECNSEAESRPKWKRRRRRRDRLRTEVTHVLR 271 (1120)
T ss_pred CHHHHHHHHhhhhccCcHHHHHHHHHhcCCCCHHHHH-HHHHHHHHHHHHHHHHHhcccccccchhhhhhHHHHHHHHHH
Confidence 3467888888888888999999999888875543322 11222222222111 0 013558888887887
Q ss_pred HHhhhcCchh------hhhccHHHHHHh---cC----CCCH---HHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCC
Q 009632 228 ALGKLLEPQD------CVAHILPVIVNF---SQ----DKSW---RVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRD 291 (530)
Q Consensus 228 ~l~~~~~~~~------~~~~~~~~l~~~---~~----d~~~---~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d 291 (530)
.+++.+.+.. +...++.++... +. +.+| .+|...|..+..+...+.... ... +
T Consensus 272 llAe~l~p~~l~~d~~L~~~lv~fIk~~~~fL~~~~~q~~~elQ~LR~~fc~ll~~l~~~~~~~~--se~-------f-- 340 (1120)
T PF14228_consen 272 LLAEFLKPGVLNDDWILRNNLVEFIKETKQFLEDEEVQNDWELQRLRYHFCGLLRNLAVGIVKAK--SEW-------F-- 340 (1120)
T ss_pred HHHhhcChhhccchHHHHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHHhhhch--hhc-------C--
Confidence 7777765421 122344444332 22 2334 577777777776665542211 111 1
Q ss_pred CcHHHHHHHHHHHHHHHHhhCHH-------HHHhhh---hHhHhHhccCC-------------cHHHHHHHHHHHHhhcc
Q 009632 292 NEAEVRIAAAGKVTKFCRILNPE-------LAIQHI---LPCVKELSSDS-------------SQHVRSALASVIMGMAP 348 (530)
Q Consensus 292 ~~~~vr~~a~~~l~~~~~~~~~~-------~~~~~l---~~~l~~~~~d~-------------~~~vr~~~~~~l~~l~~ 348 (530)
..+.|..+...+...|...+.. .+...+ .....+-.+|. ....+.+++.++..++
T Consensus 341 -pfe~RkslF~l~~eWCGy~~~~~~~~~~s~~rre~~r~~~~~~~r~kd~~~~~~~~~~Ie~~~~~L~~aAl~AMAaLc- 418 (1120)
T PF14228_consen 341 -PFEARKSLFNLFEEWCGYSPSQWGQDGRSDYRREVERYKSSQLQREKDSRERATAEMEIEEQKRNLRTAALSAMAALC- 418 (1120)
T ss_pred -CHHHHHHHHHHHHHHhhhhcccccccchhhHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 1467888888888877654321 111111 11111111221 1245556666666665
Q ss_pred ccCHHH------HHHhHHHHHHHhhcCCC---h----------------------------------HHHHHHHHhhHHh
Q 009632 349 LLGKDA------TIEQLLPIFLSLLKDEF---P----------------------------------DVRLNIISKLDQV 385 (530)
Q Consensus 349 ~~~~~~------~~~~l~~~l~~~l~d~~---~----------------------------------~vr~~a~~~l~~l 385 (530)
.|+-+ ....++.=+-.++...+ + .....+-.+|.++
T Consensus 419 -~GPif~~~~~~~~grmlsWId~if~s~s~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgr~AL~nL 497 (1120)
T PF14228_consen 419 -GGPIFDDNASKPSGRMLSWIDSIFNSPSDRMPIGYSPLDPRTMSYSKHAGEGPRGATGRDKQKSSHARHSLGRRALKNL 497 (1120)
T ss_pred -cCCccccchhcccchHHHHHHHHHcCCCCCCcCCCCCCCccCcccccccCcccccccchhhhccchHHHHHHHHHHHHH
Confidence 12211 11222222222232111 0 0111122233333
Q ss_pred hhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhC-hhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Q 009632 386 NQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG-VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLA 464 (530)
Q Consensus 386 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~-~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~ 464 (530)
... ...+++...+.+-..+..+-..+..++..+....+ ...-...++...+-.+.|+..+||..|+..|..+-
T Consensus 498 L~~------N~dLl~~~IdrCYss~~~va~gYF~vlaev~~~~~~~~~~~~~LL~L~Lfklg~~~~eIR~~A~qLL~~Le 571 (1120)
T PF14228_consen 498 LEH------NPDLLDWVIDRCYSSSPRVAEGYFTVLAEVFSEREYPPCPFWELLNLVLFKLGDESSEIRSKAMQLLRALE 571 (1120)
T ss_pred HHh------hHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCCCCCCCHHHhHHHHHHhhcCCcHHHHHHHHHHHHHHH
Confidence 321 12366666666666666665555555554432222 11123467888888889999999999999998876
Q ss_pred HHh
Q 009632 465 EEF 467 (530)
Q Consensus 465 ~~~ 467 (530)
...
T Consensus 572 ~R~ 574 (1120)
T PF14228_consen 572 ERF 574 (1120)
T ss_pred HHh
Confidence 543
No 340
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=67.03 E-value=1.6e+02 Score=30.38 Aligned_cols=252 Identities=15% Similarity=0.127 Sum_probs=121.1
Q ss_pred HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchh--HHHHHHHHHHHHhhhcCchh
Q 009632 160 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDS--VRLLAVEGCAALGKLLEPQD 237 (530)
Q Consensus 160 ~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~--vr~~a~~~l~~l~~~~~~~~ 237 (530)
..+..+.++...++.++..+|.+++..|+........+.+.. .+...+.|.+.. |...|.-+++.+.-..-.++
T Consensus 449 e~dpalALLsdyv~~~~s~~ri~aIlGLglayaGsq~e~V~~----lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn~d 524 (878)
T KOG2005|consen 449 ECDPALALLSDYLQSSSSIHRIGAILGLGLAYAGSQREEVLE----LLSPIMFDTKSPMEVVAFASLSLGMIFVGSCNED 524 (878)
T ss_pred ccCHHHHHHHHhccCCCceeehHHhhhhHHhhcCCchHHHHH----HHhHHhcCCCCchhHHHHHHhhcceeEEecCChH
Confidence 455667777788888999999999988887655444444333 444566666655 54444444444432222233
Q ss_pred hhhccHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHH
Q 009632 238 CVAHILPVIVNFSQ--DKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL 315 (530)
Q Consensus 238 ~~~~~~~~l~~~~~--d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~ 315 (530)
....++..+.+-.. -.+...|..+. .|+ .-.+|+.. .+..+...++.-...+|+.+ ..+-..|...|.-.
T Consensus 525 vts~ilqtlmekse~El~d~~~RFL~L-GL~--llflgkqe----~~d~~~e~~~~i~~~~~~~~-~~lv~~caYaGTGn 596 (878)
T KOG2005|consen 525 VTSSILQTLMEKSETELEDQWFRFLAL-GLA--LLFLGKQE----SVDAVVETIKAIEGPIRKHE-SILVKSCAYAGTGN 596 (878)
T ss_pred HHHHHHHHHHHhhhhhhhchHHHHHHH-HHH--HHHhcccc----hHHHHHHHHHHhhhHHHHHH-HHHHHHhhccccCc
Confidence 33334444433222 12222443221 111 11222221 11111111111111122221 12222223333221
Q ss_pred HHhhhhHhHhHhccCCc--H-HHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh
Q 009632 316 AIQHILPCVKELSSDSS--Q-HVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 392 (530)
Q Consensus 316 ~~~~l~~~l~~~~~d~~--~-~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 392 (530)
....--..+..+..+.. . .....++-.+.. -++|.+.-.+-.+..+-.++.=.++.+|.+.--+++-++-- ..
T Consensus 597 vl~Iq~q~ll~~cgE~~~~~e~~~~~avLgiAl--iAMgeeig~eM~lR~f~h~l~yge~~iRravPLal~llsvS--NP 672 (878)
T KOG2005|consen 597 VLKIQSQLLLSFCGEHDADLESEQELAVLGIAL--IAMGEEIGSEMVLRHFGHLLHYGEPHIRRAVPLALGLLSVS--NP 672 (878)
T ss_pred eEEechhhhhhhcCCCccchhhhccchhhhhhh--hhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhccC--CC
Confidence 10000011112222111 1 111111111111 12344444555667777888888889998888777766432 11
Q ss_pred HHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhC
Q 009632 393 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG 429 (530)
Q Consensus 393 ~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~ 429 (530)
.-.++..|.++..|.+..+-..++.+++.+...-.
T Consensus 673 --q~~vlDtLsk~shd~D~eva~naIfamGLiGAGTn 707 (878)
T KOG2005|consen 673 --QVNVLDTLSKFSHDGDLEVAMNAIFAMGLIGAGTN 707 (878)
T ss_pred --cchHHHHHHHhccCcchHHHHHHHHHhccccCCcc
Confidence 13678888888888888888888888887765433
No 341
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=66.59 E-value=46 Score=26.79 Aligned_cols=82 Identities=13% Similarity=0.145 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcChHHHHhh
Q 009632 435 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSR 514 (530)
Q Consensus 435 ~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~ 514 (530)
+.+-..+..++.+++.+|+..|++|+...- .+.. ...-+.|.++++|... |.........-....=.+...+.
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~k----~~~l-~pY~d~L~~Lldd~~f--rdeL~~f~~~~~~~~I~~ehR~~ 88 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLTWK----DPYL-TPYKDNLENLLDDKTF--RDELTTFNLSDESSVIEEEHRPE 88 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----cHHH-HhHHHHHHHHcCcchH--HHHHHhhcccCCcCCCCHHHHhH
Confidence 456677788888899999999999876532 1111 2234455566655433 32222221111100011334566
Q ss_pred HHHHHHhhc
Q 009632 515 LLPVVINAS 523 (530)
Q Consensus 515 ~~p~l~~~l 523 (530)
++|.+.+.+
T Consensus 89 l~pvvlRIL 97 (141)
T PF07539_consen 89 LMPVVLRIL 97 (141)
T ss_pred HHHHHHHHH
Confidence 777666654
No 342
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=64.93 E-value=44 Score=28.29 Aligned_cols=56 Identities=18% Similarity=0.211 Sum_probs=36.8
Q ss_pred CcHHHHHHHHHHHHHHHHH-hChhHH--hhhhHHHHHhhccCCChHHHHHHHHHHHHHh
Q 009632 448 KVYSIRDAAANNLKRLAEE-FGPEWA--MQHITPQVLEMINNPHYLYRMTILRAISLLA 503 (530)
Q Consensus 448 ~~~~Vr~~a~~~l~~l~~~-~~~~~~--~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~ 503 (530)
....+-..++.|+..+... .|-... ....+..+...+..++..+|..+++.++.++
T Consensus 128 ~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 128 EDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 4556667777777666532 122211 2567788888888899999999999888765
No 343
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.71 E-value=30 Score=29.67 Aligned_cols=87 Identities=20% Similarity=0.202 Sum_probs=50.8
Q ss_pred HHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCch--hhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccc
Q 009632 201 TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ--DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR 278 (530)
Q Consensus 201 ~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~ 278 (530)
...+|.|...+.+-+...|-.|.+.+..+....++. ...++++..+...+...+.+|...+.+.|..+....+- .-
T Consensus 113 ~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~--vG 190 (262)
T KOG3961|consen 113 CPYLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGC--VG 190 (262)
T ss_pred hHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccc--cc
Confidence 345666666666666666666666666665555532 22445555666667777777777777777766654321 11
Q ss_pred cchHHHHHHhc
Q 009632 279 MDLVPAYVRLL 289 (530)
Q Consensus 279 ~~l~~~l~~~l 289 (530)
..++|++.+++
T Consensus 191 ~aLVPfYRQlL 201 (262)
T KOG3961|consen 191 AALVPFYRQLL 201 (262)
T ss_pred hhhhhHHHHhh
Confidence 34556665554
No 344
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=63.44 E-value=77 Score=25.49 Aligned_cols=61 Identities=10% Similarity=-0.017 Sum_probs=35.0
Q ss_pred CCChhHHHHHHHHHHHHHhhhcchhh----HHHHHHH-HHHhhcC---CchhHHHHHHHHHHHHhhhcC
Q 009632 174 DDMPMVRRSAASNLGKFAATVEPAHL----KTDIMSI-FEDLTQD---DQDSVRLLAVEGCAALGKLLE 234 (530)
Q Consensus 174 d~~~~vR~~a~~~l~~l~~~~~~~~~----~~~l~~~-l~~~~~d---~~~~vr~~a~~~l~~l~~~~~ 234 (530)
.+++.|...|+..+..+.+++|.... ...++.. +.+++.+ ....|+...++.+...+..++
T Consensus 50 ~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~ 118 (141)
T cd03565 50 NKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAFR 118 (141)
T ss_pred CCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHhC
Confidence 45777777777777777777776322 2344443 5555542 223566666665555555443
No 345
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.09 E-value=2.4e+02 Score=32.51 Aligned_cols=144 Identities=11% Similarity=0.027 Sum_probs=82.2
Q ss_pred cccccccc-ccCCchHHHHHHHHHHhcccccCCCccchhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhh---
Q 009632 48 ELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLV--- 123 (530)
Q Consensus 48 ~l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~--- 123 (530)
.+.|+-.- -...+++||..+.+|...-++ .=|..++.++..-..+.+..+-+.+.+....+..........
T Consensus 1037 fl~Pfe~im~~s~s~~Irelv~rC~~~nik-----SGWk~if~i~~~aA~~~~~~iv~~~fe~v~~i~~~~f~~~~~~~~ 1111 (1514)
T KOG0929|consen 1037 FLRPFEHIMKRSSSAEIRELVVRCISSNIK-----SGWKNIFKIFTTAASDSSKNIVELAFETVSKILQELFENVFPQEM 1111 (1514)
T ss_pred hcCcchHHhhccCcchhHHHHHhhhhhhhh-----hhhhHHHHHHHHhhccchhhHHHHhHHHHHHHHHHhhhhhchhhh
Confidence 34444332 445678899999998873222 126778888888888888888888888877666654432222
Q ss_pred ---hhHHHHHHHHhcCC-ccchhHHHHhHhhh----hcCC-----CC------hH----HHHHHHHHHHhhcCCCChhHH
Q 009632 124 ---DWYIPLVKRLAAGE-WFTARVSACGLFHI----AYPS-----AP------DI----LKTELRSIYTQLCQDDMPMVR 180 (530)
Q Consensus 124 ---~~l~~~l~~l~~~~-~~~~r~~~~~~l~~----l~~~-----~~------~~----~~~~l~~~l~~l~~d~~~~vR 180 (530)
...++.+.....+. .+..-..+...+-. +.+. .. .+ ++-.++-.+...+.+....||
T Consensus 1112 ~sf~d~v~cl~~F~~~~~~~~~s~~aI~~lr~ca~k~~e~~~~~~~~~~~~~~~~~~~~~wfP~l~~ls~i~~~~~~~vr 1191 (1514)
T KOG0929|consen 1112 DSFKDCVKCLEEFTKNLGFPDDSLNAIRFLRLCALKLAEGVYNEKLKVGKDSEFDVWNSGWFPMLFQLSKIINDYRLEVR 1191 (1514)
T ss_pred HHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhccccchhhcccccccccccceeeeehhHhhhhHHhhccHHHHH
Confidence 22344444444332 12222222222211 1111 11 01 223344444455568889999
Q ss_pred HHHHHHHHHHHhhhcc
Q 009632 181 RSAASNLGKFAATVEP 196 (530)
Q Consensus 181 ~~a~~~l~~l~~~~~~ 196 (530)
..+.+.+-.+....|.
T Consensus 1192 ~~al~vlF~il~~~g~ 1207 (1514)
T KOG0929|consen 1192 KRALEVLFDILKEHGD 1207 (1514)
T ss_pred HHHHHHHHHHHHhhhh
Confidence 9999999888876665
No 346
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.86 E-value=28 Score=29.81 Aligned_cols=88 Identities=15% Similarity=0.083 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHH--hhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcC---h-
Q 009632 435 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA--MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG---S- 508 (530)
Q Consensus 435 ~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~--~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~---~- 508 (530)
...+|.+...+.+.+..-|..|-+-+..+....|+... ...++..+.+.+...|.++-..++.++..+.-..| +
T Consensus 113 ~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~a 192 (262)
T KOG3961|consen 113 CPYLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAA 192 (262)
T ss_pred hHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchh
Confidence 34566666666666666666666666666666553321 13444445556667777777777777777654433 2
Q ss_pred -HHHHhhHHHHHHhh
Q 009632 509 -EITCSRLLPVVINA 522 (530)
Q Consensus 509 -~~~~~~~~p~l~~~ 522 (530)
..|..+++|.+..+
T Consensus 193 LVPfYRQlLp~~n~~ 207 (262)
T KOG3961|consen 193 LVPFYRQLLPVLNTF 207 (262)
T ss_pred hhhHHHHhhhhhhhh
Confidence 34566666655443
No 347
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=62.03 E-value=1.7e+02 Score=29.03 Aligned_cols=328 Identities=11% Similarity=0.091 Sum_probs=144.3
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCch---h-
Q 009632 162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ---D- 237 (530)
Q Consensus 162 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~- 237 (530)
.++..+|...+.--.+..|...+.+|.-+-.. +......++..|..++.-.+...|..+..-+....+.+... .
T Consensus 19 ~el~dLL~~~~~~lp~~Lr~~i~~~LiLLrNk--~~i~~~~LL~lff~l~~~~dk~lRkllythiv~~Ikn~n~~~kn~k 96 (616)
T KOG2229|consen 19 SELKDLLRTNHTVLPPELREKIVKALILLRNK--NLIVAEDLLELFFPLLRCGDKNLRKLLYTHIVTTIKNINKKHKNDK 96 (616)
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHHHHHhcc--CcCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHhhcccch
Confidence 44555555555555788888888888766431 22223456666666666666667887777766666644321 1
Q ss_pred hhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccc-cchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH---
Q 009632 238 CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR-MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP--- 313 (530)
Q Consensus 238 ~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~--- 313 (530)
.-..+-.++..++.++++.- +-+++..++.......+. ..-+.+....+-+.+|.|..+++..+-..=..-..
T Consensus 97 lnkslq~~~fsml~~~d~~~---ak~a~~~~~eL~kr~iW~d~~tV~i~~~acf~~~~ki~vs~l~FfL~~D~~dee~ds 173 (616)
T KOG2229|consen 97 LNKSLQAFMFSMLDQSDSTA---AKMALDTMIELYKRNIWNDSKTVNIITTACFSKVPKILVSGLRFFLGADNEDEEDDS 173 (616)
T ss_pred HHHHHHHHHHHHHhCCCchh---HHHHHHHHHHHHHhcccccchhHHHHHHHHhccCcHHHHhhhHHhccCCcccccccc
Confidence 12224444556677666542 223333334333333221 12233333334445555554444332111000000
Q ss_pred H---HH-HhhhhHhHhHhccCCc----HHHHHHHHHH--------------HHhhccccCHHHHHHhHHHHHHHhhcCCC
Q 009632 314 E---LA-IQHILPCVKELSSDSS----QHVRSALASV--------------IMGMAPLLGKDATIEQLLPIFLSLLKDEF 371 (530)
Q Consensus 314 ~---~~-~~~l~~~l~~~~~d~~----~~vr~~~~~~--------------l~~l~~~~~~~~~~~~l~~~l~~~l~d~~ 371 (530)
+ .. -+.+-..+.+.+..+. .....++... ++.+-..-.+..|...+++.+... ...
T Consensus 174 d~~~d~dg~~~~~l~~~~vnkktkkr~~kl~~a~k~vkkkqk~~~~~~t~nfs~i~ll~DpQ~fAEkLfk~~~~~--~er 251 (616)
T KOG2229|consen 174 DSESDEDGPDADALLHQRVNKKTKKRQKKLLRAAKSVKKKQKKKKNAPTFNFSAIHLLHDPQGFAEKLFKQLLAC--KER 251 (616)
T ss_pred ccccccccccHHHHHHHHHhccchhhHHHHHHHHHHHHHHHhcCCCCCCCCccHHHhhcChhHHHHHHHHHHhhh--hhh
Confidence 0 00 0000111111111110 0011111100 001111112334555555555443 223
Q ss_pred hHHHHHHHHhhHHhhhhhchhHH-HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHh-hhChhhHHHHHHHHHHHHhcCCc
Q 009632 372 PDVRLNIISKLDQVNQVIGIDLL-SQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS-QLGVGFFDDKLGALCMQWLQDKV 449 (530)
Q Consensus 372 ~~vr~~a~~~l~~l~~~~~~~~~-~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~-~~~~~~~~~~~~~~l~~~l~d~~ 449 (530)
-++|.-.+..+..++ |...+ .=.+.|.|..++..-...+.+.. .+..+.+. ...++...+.+..+.-...+|.+
T Consensus 252 ~E~klm~~~lisRli---G~HkL~l~~fY~fl~~yl~phqrDvTqIl-~~aaQa~Hd~VP~d~iEpl~k~Ian~FVtD~~ 327 (616)
T KOG2229|consen 252 FEVKLMLMKLISRLI---GIHKLFLFGFYPFLQRYLQPHQRDVTQIL-AAAAQASHDLVPPDIIEPLLKTIANNFVTDEN 327 (616)
T ss_pred HHHHHHHHHHHHHHh---hhhHHHHhhhHHHHHHHcCcchhhHHHHH-HHHHHhccCCCChHHhhHHHHHHHHHhcccCC
Confidence 456666666655554 33322 23566777777655433332222 22222222 22333333333444444556644
Q ss_pred -HHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhccCCChHHHHHHHHHHHHH
Q 009632 450 -YSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLL 502 (530)
Q Consensus 450 -~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i 502 (530)
++|-...+.++.+++.....- -.++++..|...-..... +...+..++-.+
T Consensus 328 spEv~~vgiN~iREic~Rvpla-MteeLLqDLa~YK~sk~K-~V~maarSLI~L 379 (616)
T KOG2229|consen 328 SPEVMAVGINAIREICERVPLA-MTEELLQDLASYKTSKKK-VVMMAARSLIAL 379 (616)
T ss_pred CcceeehhhhHHHHHHhhcchh-hcHHHHHHHHHHhHHHHH-HHHHHHHHHHHH
Confidence 567777777777777665322 124455555554433333 334444444444
No 348
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=61.06 E-value=2.6e+02 Score=30.86 Aligned_cols=72 Identities=18% Similarity=0.102 Sum_probs=40.9
Q ss_pred cCCccchhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcCCC--ChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhc
Q 009632 135 AGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDD--MPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ 212 (530)
Q Consensus 135 ~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~d~--~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~ 212 (530)
+|.+...+..|+..+..+-...+. ..|...+.|+ =+.||.+|+.+|+..+.....=.-.+.++..+.+...
T Consensus 653 ~drDVvAQ~EAI~~le~~p~~~s~-------~~L~rtl~der~FyrIR~~Aa~aLak~a~~~~dwtG~~~Li~~F~~~fc 725 (1180)
T KOG1932|consen 653 QDRDVVAQMEAIESLEALPSTASR-------SALTRTLEDERYFYRIRIAAAFALAKTANGESDWTGPPHLIQFFRKKFC 725 (1180)
T ss_pred hcccHHHHHHHHHHHHcCCcchhH-------HHHHHHHhhcchhhHHHHHHHHHHHHhhcccccccChHHHHHHHHHHhc
Confidence 444444455555555443332221 4444555555 3789999999999988754221223556677666554
Q ss_pred C
Q 009632 213 D 213 (530)
Q Consensus 213 d 213 (530)
+
T Consensus 726 ~ 726 (1180)
T KOG1932|consen 726 S 726 (1180)
T ss_pred c
Confidence 3
No 349
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=60.10 E-value=1.9e+02 Score=30.55 Aligned_cols=150 Identities=19% Similarity=0.147 Sum_probs=92.9
Q ss_pred cHHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhccccccccccCCchHHHHHHHHHHhcccccCCCccchhcchh
Q 009632 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLP 89 (530)
Q Consensus 10 ~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~ 89 (530)
.|..|+..+.|.|......+-..+......--.......++.+..+.+ +.. +...|..+ . ..+...++.
T Consensus 5 ~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~y~~~t~--s~~----~~~il~~~----~-~P~~K~~~~ 73 (668)
T PF04388_consen 5 SITELLSLLESNDLSVLEEIKALLQELLNSDREPWLVNGLVDYYLSTN--SQR----ALEILVGV----Q-EPHDKHLFD 73 (668)
T ss_pred cHHHHHHHhcCCchhhHHHHHHHHHHHhhccchHHHHHHHHHHHhhcC--cHH----HHHHHHhc----C-CccHHHHHH
Confidence 377889999999998877666554433211101122233333333322 211 22233232 2 345577778
Q ss_pred HHHhhhcccchHHHHHHHHHHHHHHhhcChhh---hh-hhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCCh---HHHH
Q 009632 90 PLETLCTVEETCVRDKAVESLCRIGSQMRESD---LV-DWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD---ILKT 162 (530)
Q Consensus 90 ~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~---~~-~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~---~~~~ 162 (530)
.|...+.. +.-|..++..|+.++..-++.. .. ..+..++..+..|.+..+-..|..++..+.+.++. .+..
T Consensus 74 ~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~L~ 151 (668)
T PF04388_consen 74 KLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPHLP 151 (668)
T ss_pred HHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHHHH
Confidence 88777754 5788899999999988755421 12 23455566666777777777888888888887764 3778
Q ss_pred HHHHHHHhhc
Q 009632 163 ELRSIYTQLC 172 (530)
Q Consensus 163 ~l~~~l~~l~ 172 (530)
+++.++..++
T Consensus 152 ~Lf~If~Rl~ 161 (668)
T PF04388_consen 152 DLFNIFGRLL 161 (668)
T ss_pred HHHHHHHHHH
Confidence 8888888876
No 350
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=55.78 E-value=3.5e+02 Score=30.57 Aligned_cols=69 Identities=17% Similarity=0.063 Sum_probs=42.0
Q ss_pred cHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC-cccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHh
Q 009632 242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP-EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI 310 (530)
Q Consensus 242 ~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~-~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 310 (530)
+++.+..-|-..+..|-.....++.++...... ......++...+-.+.|++.+||..|++-|..+-..
T Consensus 504 Ll~~~IdrCYss~~~va~gYF~vlaev~~~~~~~~~~~~~LL~L~Lfklg~~~~eIR~~A~qLL~~Le~R 573 (1120)
T PF14228_consen 504 LLDWVIDRCYSSSPRVAEGYFTVLAEVFSEREYPPCPFWELLNLVLFKLGDESSEIRSKAMQLLRALEER 573 (1120)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHcCCCCCCCHHHhHHHHHHhhcCCcHHHHHHHHHHHHHHHHH
Confidence 444455555555666655555555444322211 111335777777778899999999999988877543
No 351
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=53.95 E-value=1.6e+02 Score=26.19 Aligned_cols=53 Identities=8% Similarity=0.122 Sum_probs=25.2
Q ss_pred hHHHHHHHHhhHHhhhhhchhHHH----hhHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 009632 372 PDVRLNIISKLDQVNQVIGIDLLS----QSLLPAIVELAEDRHWRVRLAIIEYIPLL 424 (530)
Q Consensus 372 ~~vr~~a~~~l~~l~~~~~~~~~~----~~l~~~l~~~~~~~~~~~R~~~~~~l~~l 424 (530)
+..|..++..++.+.+.-..+.+. ..++|...+.+...+...+..|...++.+
T Consensus 139 EyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKI 195 (293)
T KOG3036|consen 139 EYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKI 195 (293)
T ss_pred HHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 445666655555555543322221 23444555555555544444444444433
No 352
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=52.60 E-value=1.7e+02 Score=26.09 Aligned_cols=86 Identities=23% Similarity=0.255 Sum_probs=50.8
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChh------------hH--------------------HHHHHHHHHHH
Q 009632 397 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG------------FF--------------------DDKLGALCMQW 444 (530)
Q Consensus 397 ~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~------------~~--------------------~~~~~~~l~~~ 444 (530)
.+-..+.....+.++.+|..++.++..+.-..... .+ ...++..++..
T Consensus 43 ~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~ 122 (239)
T PF11935_consen 43 ELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSDSPPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDV 122 (239)
T ss_dssp HHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCCccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 34444555566667777777777777665533110 00 23466777777
Q ss_pred hcCCc--HHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhc
Q 009632 445 LQDKV--YSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI 484 (530)
Q Consensus 445 l~d~~--~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~ 484 (530)
+.++. ..+-.+.+.+|+.|++.=. . ....+++.+.++-
T Consensus 123 l~~~~i~~~~~~a~insL~~Iak~RP-~-~~~~Il~~ll~~~ 162 (239)
T PF11935_consen 123 LQSPHISSPLLTAIINSLSNIAKQRP-Q-FMSRILPALLSFN 162 (239)
T ss_dssp HC-TT--HHHHHHHHHHHHHHHHHSG-G-GHHHHHHHHHHHH
T ss_pred HhhcccchHHHHHHHHHHHHHHHHhh-H-HHHHHHHHHHhcC
Confidence 76655 5677777788887776532 2 2356777777653
No 353
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=52.49 E-value=85 Score=27.25 Aligned_cols=31 Identities=19% Similarity=0.239 Sum_probs=20.3
Q ss_pred hccHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 009632 240 AHILPVIVNFSQDKSWRVRYMVANQLYELCE 270 (530)
Q Consensus 240 ~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~ 270 (530)
..+++.+..++.|+...|+.+...+|.+++.
T Consensus 153 ~~if~i~E~~l~d~e~fV~KAigWaLrq~~k 183 (222)
T COG4912 153 LEIFEIIELLLGDKEFFVQKAIGWALRQIGK 183 (222)
T ss_pred hHHHHHHHHHccChHHHHHHHHHHHHHHHHh
Confidence 3466666666666666677666666666665
No 354
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.34 E-value=2.5e+02 Score=27.81 Aligned_cols=56 Identities=13% Similarity=0.165 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhc--chhhHHHHHHHHHHhhcCCc
Q 009632 160 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVE--PAHLKTDIMSIFEDLTQDDQ 215 (530)
Q Consensus 160 ~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~~~d~~ 215 (530)
....++..+.++....++..|+..+..+-++.-.-+ +..+...++|.+..++.++.
T Consensus 342 ~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~ 399 (791)
T KOG1222|consen 342 EQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDT 399 (791)
T ss_pred HhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCcc
Confidence 345677788888888888888888887777654322 23444567788888887664
No 355
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=50.73 E-value=2.8e+02 Score=27.98 Aligned_cols=97 Identities=19% Similarity=0.188 Sum_probs=55.1
Q ss_pred CcHHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhccccccccccCCchHHHHHHHHHHhc-ccccCCCccchhcc
Q 009632 9 YPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGV-FIPYVGGVEHAHVL 87 (530)
Q Consensus 9 ~~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~~~~~l~~-~~~~~~~~~~~~~l 87 (530)
.++..|-+++++++...|..|+-+|+..-..-..+...+.|.|.+.+ .|..-++...++..||. |+.... .+..+.+
T Consensus 450 palalLs~yl~s~s~k~~~aaiLGlg~afsGt~~eevl~lL~Pi~~s-td~pie~~~~asltLg~vFvGtcn-gD~ts~i 527 (881)
T COG5110 450 PALALLSNYLQSSSSKHVIAAILGLGAAFSGTQAEEVLELLQPIMFS-TDSPIEVVFFASLTLGSVFVGTCN-GDLTSLI 527 (881)
T ss_pred hHHHHHHHhccCCchHHHHHHHhhhHHhhcCCcHHHHHHHhhhhhcC-CCCcHHHHHHHHHhhhheEeeccC-chHHHHH
Confidence 45667779999999999999998888643333334444444454432 12223677777777774 333322 3444555
Q ss_pred hhHHHhhh--cccchHHHHHHH
Q 009632 88 LPPLETLC--TVEETCVRDKAV 107 (530)
Q Consensus 88 ~~~l~~l~--~d~~~~vR~~a~ 107 (530)
+..+.+-- ..+..-+|..|+
T Consensus 528 lqtf~Er~~~e~~tqw~RFlaL 549 (881)
T COG5110 528 LQTFVERGKIESETQWFRFLAL 549 (881)
T ss_pred HHHHHHhhhhhhhhHHHHHHHH
Confidence 54443322 233444555554
No 356
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=50.19 E-value=89 Score=23.43 Aligned_cols=54 Identities=20% Similarity=0.157 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHh---hhhHHHHHhhccC
Q 009632 433 FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM---QHITPQVLEMINN 486 (530)
Q Consensus 433 ~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~---~~i~~~l~~~~~d 486 (530)
+.+.++.++...+++-.++||.-+++.|..+.+.++..... ..+++.+..++.-
T Consensus 8 ~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~ 64 (102)
T PF12333_consen 8 FFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGW 64 (102)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCC
Confidence 44567777777888888889999999998888888766221 4566666666543
No 357
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=49.85 E-value=1.9e+02 Score=25.79 Aligned_cols=66 Identities=11% Similarity=0.177 Sum_probs=41.1
Q ss_pred HHHHHHhhcCCC-ChhHHHHHHHHHHHHHhhhcchh----hHHHHHHHHHHhhcCCchhHHHHHHHHHHHH
Q 009632 164 LRSIYTQLCQDD-MPMVRRSAASNLGKFAATVEPAH----LKTDIMSIFEDLTQDDQDSVRLLAVEGCAAL 229 (530)
Q Consensus 164 l~~~l~~l~~d~-~~~vR~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l 229 (530)
+.|++.....+. ..-.|-.++..++.+.+.-..+. ...+++|...+.+...++.-+..|...+..+
T Consensus 125 lYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKI 195 (293)
T KOG3036|consen 125 LYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKI 195 (293)
T ss_pred hHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 445555444333 44578888888888877655442 1356778887777777766666666555544
No 358
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=49.67 E-value=1.7e+02 Score=25.08 Aligned_cols=84 Identities=13% Similarity=0.160 Sum_probs=39.3
Q ss_pred HHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC-hhHHhhhhHHHHHhhccC--CChHHHHHHHH
Q 009632 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG-PEWAMQHITPQVLEMINN--PHYLYRMTILR 497 (530)
Q Consensus 421 l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~-~~~~~~~i~~~l~~~~~d--~~~~vr~~a~~ 497 (530)
+..+.+.++...+...++..+..-.......+...+..+|-..+.... .......+...+...+.+ .+.++-.-+++
T Consensus 72 F~~l~~LL~~~~y~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~~~~~~~~~~~~v~~~l~~il~~~~~~dRv~vP~l~ 151 (193)
T PF12612_consen 72 FPRLVKLLDLPEYRYSLLSGLVVSAGGLTESLVRASSAALLSYLRELSDSPEELEQVLSDLLSILKENLRNDRVVVPLLK 151 (193)
T ss_pred HHHHHHHhccHHHHHHHHhHHHhcCCCCchhHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCCCCCeeecHHH
Confidence 333344444444444455555444555555566666666555554321 111224455555555433 23444444555
Q ss_pred HHHHHhh
Q 009632 498 AISLLAP 504 (530)
Q Consensus 498 ~l~~i~~ 504 (530)
++..+..
T Consensus 152 tl~~Ll~ 158 (193)
T PF12612_consen 152 TLDFLLS 158 (193)
T ss_pred HHHHHHh
Confidence 5555443
No 359
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=49.60 E-value=2.3e+02 Score=26.76 Aligned_cols=145 Identities=13% Similarity=0.070 Sum_probs=90.8
Q ss_pred HHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHH---------HhhHHHHHHHHhc-CCC---------hHHHHHHHHH
Q 009632 360 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL---------SQSLLPAIVELAE-DRH---------WRVRLAIIEY 420 (530)
Q Consensus 360 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~---------~~~l~~~l~~~~~-~~~---------~~~R~~~~~~ 420 (530)
+..+...|+.....+...++..|..++..-|.... .-..+|.+...-. +.. ..+|..++.+
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 67778888888777878888888888774442211 1123333332211 111 2899999999
Q ss_pred HHHHHhhhChhhHH-----HHHHHHHHHHhcCCcHHHHHHHHHHHHHH-HHHh--Ch----hHHhhhhHHHHHhhccCCC
Q 009632 421 IPLLASQLGVGFFD-----DKLGALCMQWLQDKVYSIRDAAANNLKRL-AEEF--GP----EWAMQHITPQVLEMINNPH 488 (530)
Q Consensus 421 l~~l~~~~~~~~~~-----~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l-~~~~--~~----~~~~~~i~~~l~~~~~d~~ 488 (530)
+-.+....+..... ..++..+.+.+.++.+.+-...+.++..- ...- .. ....+..+..+..++...+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 98888766544322 23477788888777777777777777642 2211 11 1222566777777776655
Q ss_pred h----HHHHHHHHHHHHHhh
Q 009632 489 Y----LYRMTILRAISLLAP 504 (530)
Q Consensus 489 ~----~vr~~a~~~l~~i~~ 504 (530)
. .++..+-+.+..++-
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT 237 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCT 237 (330)
T ss_pred CcccchHHHHHHHHHHHHhc
Confidence 5 788888888877763
No 360
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=48.97 E-value=1.3e+02 Score=25.30 Aligned_cols=55 Identities=13% Similarity=0.161 Sum_probs=29.1
Q ss_pred ChHHHHHHHHhhHHhhhh-hchhHHH--hhHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 009632 371 FPDVRLNIISKLDQVNQV-IGIDLLS--QSLLPAIVELAEDRHWRVRLAIIEYIPLLA 425 (530)
Q Consensus 371 ~~~vr~~a~~~l~~l~~~-~~~~~~~--~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~ 425 (530)
+......++.++..+.+. .|.+.+. +..+..+...+.+++..+|..+++.+..++
T Consensus 129 ~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 129 DIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp CHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 344555555555554432 2222221 345566666666677777777777776654
No 361
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=48.59 E-value=2.4e+02 Score=26.69 Aligned_cols=187 Identities=9% Similarity=0.075 Sum_probs=108.8
Q ss_pred hhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh-CCcc--c------c-cchHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 009632 239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV-GPEP--T------R-MDLVPAYVRLLRDNEAEVRIAAAGKVTKFC 308 (530)
Q Consensus 239 ~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~-~~~~--~------~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~ 308 (530)
...+++.+...+..-+...|..++..+..+...- +... + . ..++..+...-.+++ +-..+-.-+..++
T Consensus 74 ~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~d--ial~~g~mlRec~ 151 (335)
T PF08569_consen 74 RSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPD--IALNCGDMLRECI 151 (335)
T ss_dssp HHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTT--THHHHHHHHHHHT
T ss_pred HhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCcc--ccchHHHHHHHHH
Confidence 3446777777777777888888888888776542 2211 1 1 345555555555443 2222222222222
Q ss_pred HhhC--HHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhcccc---CHHHH---HHhHHHHHHHhhcCCChHHHHHHHH
Q 009632 309 RILN--PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL---GKDAT---IEQLLPIFLSLLKDEFPDVRLNIIS 380 (530)
Q Consensus 309 ~~~~--~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~---~~~~~---~~~l~~~l~~~l~d~~~~vr~~a~~ 380 (530)
+.-. .-.+....+..+.+.++.++-.+-..+..++..+...- ..+++ .+.+...+..+|..+++-.|.++++
T Consensus 152 k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslk 231 (335)
T PF08569_consen 152 KHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLK 231 (335)
T ss_dssp TSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHH
T ss_pred hhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHH
Confidence 1100 00111233344455667788888887777776654321 11222 3456668888999999999999999
Q ss_pred hhHHhhhhhchhHH------HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 009632 381 KLDQVNQVIGIDLL------SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 427 (530)
Q Consensus 381 ~l~~l~~~~~~~~~------~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~ 427 (530)
.|+++...-..-.+ ...-+..++.+++|++..+|..|.+.+--++..
T Consensus 232 LL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 232 LLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 99999744322111 245577788899999999999999999876654
No 362
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=48.56 E-value=3.6e+02 Score=28.58 Aligned_cols=85 Identities=14% Similarity=0.058 Sum_probs=49.1
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHH---hhhhHHHHHhhc-cCCChHHHHHHHHHHHHHhhhcCh--HH
Q 009632 437 LGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA---MQHITPQVLEMI-NNPHYLYRMTILRAISLLAPVMGS--EI 510 (530)
Q Consensus 437 ~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~---~~~i~~~l~~~~-~d~~~~vr~~a~~~l~~i~~~~~~--~~ 510 (530)
++..+-.++..+ .-|..++..|+.+++..+.... ...+++.|.+++ .|.+.-+-..|+.++..+...++. ..
T Consensus 71 ~~~~l~~~~~~~--~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~ 148 (668)
T PF04388_consen 71 LFDKLNDYFVKP--SYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGP 148 (668)
T ss_pred HHHHHHHHHcCc--hhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhH
Confidence 444444455443 4577777777777766443221 234566666554 466777777777777777776653 23
Q ss_pred HHhhHHHHHHhhc
Q 009632 511 TCSRLLPVVINAS 523 (530)
Q Consensus 511 ~~~~~~p~l~~~l 523 (530)
+++.++.+..+++
T Consensus 149 ~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 149 HLPDLFNIFGRLL 161 (668)
T ss_pred HHHHHHHHHHHHH
Confidence 4455555444443
No 363
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=47.49 E-value=1.6e+02 Score=24.26 Aligned_cols=111 Identities=10% Similarity=0.106 Sum_probs=61.1
Q ss_pred HHHHHHHhhcCCC------hHHHHHHHHhhHHhhhh--hchhHHHhhHHHHHHHHhcCC--ChHHHHHHHHHHHHHHhhh
Q 009632 359 LLPIFLSLLKDEF------PDVRLNIISKLDQVNQV--IGIDLLSQSLLPAIVELAEDR--HWRVRLAIIEYIPLLASQL 428 (530)
Q Consensus 359 l~~~l~~~l~d~~------~~vr~~a~~~l~~l~~~--~~~~~~~~~l~~~l~~~~~~~--~~~~R~~~~~~l~~l~~~~ 428 (530)
=++.+...+.++. .+.-..++.++..+.+. ++-+.+...++..+..+.+.+ +..+-+.++..+..++..-
T Consensus 12 Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S 91 (160)
T PF11841_consen 12 GLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNS 91 (160)
T ss_pred CHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCC
Confidence 3455555665544 24445555666665552 233333445555555554433 4667777777777766422
Q ss_pred Chhh--HH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCh
Q 009632 429 GVGF--FD-DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP 469 (530)
Q Consensus 429 ~~~~--~~-~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~ 469 (530)
..-+ +. +--++.+...+.+.+.+++..|+..+..+....++
T Consensus 92 ~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 92 PKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred HHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCh
Confidence 1101 11 22355666667777788888888777777665543
No 364
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=45.92 E-value=5.6e+02 Score=30.08 Aligned_cols=149 Identities=11% Similarity=0.086 Sum_probs=81.8
Q ss_pred chhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHH-HHHHHHhcCCccchhHHHHhHhhhhcCCCChHH-
Q 009632 83 HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYI-PLVKRLAAGEWFTARVSACGLFHIAYPSAPDIL- 160 (530)
Q Consensus 83 ~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~-~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~- 160 (530)
+...++.+...++...++.|+..+......+...+.. ...+.++ .++..++.+.+..+ .+|...+..++..-+...
T Consensus 432 ~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds-~~qqeVv~~Lvthi~sg~~~ev-~~aL~vL~~L~~~~~~~l~ 509 (1426)
T PF14631_consen 432 YFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDS-YCQQEVVGALVTHIGSGNSQEV-DAALDVLCELAEKNPSELQ 509 (1426)
T ss_dssp SHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-H-HHHHHHHHHHHHHHHH--HHHH-HHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHHcCCcHHHH-HHHHHHHHHHHhccHHHHH
Confidence 4455666667778889999999999999999988854 3334444 44455545444333 356666666664322221
Q ss_pred -HHHHHHHHHhhcCCCC-hhHHHHHHHHHHHHHhhhcc--hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcC
Q 009632 161 -KTELRSIYTQLCQDDM-PMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLE 234 (530)
Q Consensus 161 -~~~l~~~l~~l~~d~~-~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~ 234 (530)
....+..++..+++=+ ..+|+. ...+..++-.-+. ....+++.=.+.+.+...+...+..++-....+...++
T Consensus 510 ~fa~~l~giLD~l~~Ls~~qiR~l-f~il~~La~~~~~~~s~i~del~ivIRKQLss~~~~~K~~GIIGav~~i~~la 586 (1426)
T PF14631_consen 510 PFATFLKGILDYLDNLSLQQIRKL-FDILCTLAFSDSSSSSSIQDELHIVIRKQLSSSNPKYKRIGIIGAVMMIKHLA 586 (1426)
T ss_dssp HTHHHHHGGGGGGGG--HHHHHHH-HHHHHHHHHHHSS---HHHHHHHHHHHHHHT-SSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHHhcCCcccchhhHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHHHHH
Confidence 1223333344444433 445554 5566665533322 23345565667777888777777665554444444443
No 365
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=44.94 E-value=96 Score=23.24 Aligned_cols=53 Identities=15% Similarity=0.028 Sum_probs=36.8
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcch---hhHHHHHHHHHHhhcCC
Q 009632 162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA---HLKTDIMSIFEDLTQDD 214 (530)
Q Consensus 162 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~ 214 (530)
+.++..+...+..-++.||..++..|.-+.++.|.+ ....++++.+..++...
T Consensus 10 ~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 10 PLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 445555556667778899999999999988888775 22345666666666544
No 366
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=44.38 E-value=2.8e+02 Score=26.12 Aligned_cols=169 Identities=14% Similarity=0.194 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHHhhCH-HHHHhhhhHhHhH-hcc--------CCcHHHHHHHHHHHHhhccccCH--HHHHHhHHHH
Q 009632 295 EVRIAAAGKVTKFCRILNP-ELAIQHILPCVKE-LSS--------DSSQHVRSALASVIMGMAPLLGK--DATIEQLLPI 362 (530)
Q Consensus 295 ~vr~~a~~~l~~~~~~~~~-~~~~~~l~~~l~~-~~~--------d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~ 362 (530)
.+|+..++.+..+...... +...+.++|-+.+ .+. -+++.|-......+..+.....+ ....+.+...
T Consensus 42 ~iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~ 121 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFEC 121 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 3555666666666554442 2222333333322 111 13344444444444444443321 2344555555
Q ss_pred HHHhhcC---CChHHHHHHHHhhHHhhhhh-------chhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCh--
Q 009632 363 FLSLLKD---EFPDVRLNIISKLDQVNQVI-------GIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV-- 430 (530)
Q Consensus 363 l~~~l~d---~~~~vr~~a~~~l~~l~~~~-------~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~-- 430 (530)
...++.+ +.|+.|..-.+.+..+.... +++. .+.++..+.+.+++++..+-..++.++..+.+.+..
T Consensus 122 Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~-f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~ 200 (319)
T PF08767_consen 122 TLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQ-FKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTN 200 (319)
T ss_dssp HHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHH-HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHH-HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcC
Confidence 6666654 35788988888888877642 2222 357788888889999999999999999988887765
Q ss_pred -----hhHHHHHHH---HHHHHhcCCcH--HHHHHHHHHHHHHHH
Q 009632 431 -----GFFDDKLGA---LCMQWLQDKVY--SIRDAAANNLKRLAE 465 (530)
Q Consensus 431 -----~~~~~~~~~---~l~~~l~d~~~--~Vr~~a~~~l~~l~~ 465 (530)
.++....++ .++..+.|+.. ..+..+ ..|..+..
T Consensus 201 ~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~-~iL~~Lf~ 244 (319)
T PF08767_consen 201 PEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQS-QILSNLFR 244 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHH-HHHHHHHH
Confidence 334444333 34445566543 233333 44555553
No 367
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=43.41 E-value=1.7e+02 Score=23.37 Aligned_cols=96 Identities=15% Similarity=-0.032 Sum_probs=61.0
Q ss_pred CCChHHHHHHHHhhHHhhhhhch-hHH-HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhh-ChhhHH-HHHHHHHHHH
Q 009632 369 DEFPDVRLNIISKLDQVNQVIGI-DLL-SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-GVGFFD-DKLGALCMQW 444 (530)
Q Consensus 369 d~~~~vr~~a~~~l~~l~~~~~~-~~~-~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~-~~~~~~-~~~~~~l~~~ 444 (530)
..+.+-+++....|+++...--. ..+ .-.++..++..+..++.....-++..+.+++.-- ..++.. ..-+|.++..
T Consensus 28 tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~ea~g~plii~~ 107 (173)
T KOG4646|consen 28 TTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIREALGLPLIIFV 107 (173)
T ss_pred hccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHHHhcCCceEEee
Confidence 45667778887788776532111 111 1256777888888888888888877777665321 122222 2236777788
Q ss_pred hcCCcHHHHHHHHHHHHHHH
Q 009632 445 LQDKVYSIRDAAANNLKRLA 464 (530)
Q Consensus 445 l~d~~~~Vr~~a~~~l~~l~ 464 (530)
++|+...+-..|+..+..+.
T Consensus 108 lssp~e~tv~sa~~~l~~l~ 127 (173)
T KOG4646|consen 108 LSSPPEITVHSAALFLQLLE 127 (173)
T ss_pred cCCChHHHHHHHHHHHHHhc
Confidence 88988888777777765543
No 368
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=43.35 E-value=4.5e+02 Score=28.25 Aligned_cols=109 Identities=10% Similarity=0.087 Sum_probs=70.2
Q ss_pred HHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc--hhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcc--
Q 009632 201 TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP-- 276 (530)
Q Consensus 201 ~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~-- 276 (530)
.++.....+-+......--..|++++..+..++.. ..|...++..+..++++.....+-.+++++..++..-++..
T Consensus 55 ~yL~~R~~kdl~~~r~~~v~Iamea~~kLL~~C~eq~n~F~ssfL~mv~~LLes~~~~~~ilg~~sf~~F~~i~~d~~sy 134 (819)
T KOG1877|consen 55 TYLEERCYKDLRRERFGSVKIAMEAYDKLLQACKEQINLFVSSFLRMVQKLLESNNDEMQILGTNSFVKFANIEEDGPSY 134 (819)
T ss_pred HHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeehhhHHHHHHhhcccCchh
Confidence 33434433334444444445567777777776654 34566688888888888888899999999999987655431
Q ss_pred --cccchHHHHHHhcCCC-----cHHHHHHHHHHHHHHHH
Q 009632 277 --TRMDLVPAYVRLLRDN-----EAEVRIAAAGKVTKFCR 309 (530)
Q Consensus 277 --~~~~l~~~l~~~l~d~-----~~~vr~~a~~~l~~~~~ 309 (530)
..+.+++.|.+++... ...+|.+.+++|..+..
T Consensus 135 ~~~yd~Fi~kf~~l~he~~~~~~~~~lr~agl~gLsa~v~ 174 (819)
T KOG1877|consen 135 HRNYDFFISKFSSLCHERGDDDMKDCLRAAGLQGLSAVVW 174 (819)
T ss_pred hhhhHHHHHHHHHHhhcccchhhhhhccHhhhhhHHHHHH
Confidence 1345777777777542 14567777777766544
No 369
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=41.50 E-value=3e+02 Score=25.68 Aligned_cols=68 Identities=12% Similarity=0.096 Sum_probs=48.7
Q ss_pred HHHHHHHHhcCCcHH-HHHHHHHHHHHHHHHhChhH---HhhhhHHHHHhhccCCChHHHHHHHHHHHHHhh
Q 009632 437 LGALCMQWLQDKVYS-IRDAAANNLKRLAEEFGPEW---AMQHITPQVLEMINNPHYLYRMTILRAISLLAP 504 (530)
Q Consensus 437 ~~~~l~~~l~d~~~~-Vr~~a~~~l~~l~~~~~~~~---~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~ 504 (530)
++..+.+++..++++ .-..||.=++.+++..++.. ..-.....+++++++++.+||-.|++++..++.
T Consensus 357 i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 357 IVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 666777777766665 34557777777777764431 123455678888999999999999999987764
No 370
>PF08620 RPAP1_C: RPAP1-like, C-terminal; InterPro: IPR013929 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans.
Probab=41.16 E-value=66 Score=22.36 Aligned_cols=38 Identities=16% Similarity=0.093 Sum_probs=32.1
Q ss_pred CCCCCcCcHHHHHHHhcChhHHHHHHHhhcHHHHHHhh
Q 009632 3 MVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARAL 40 (530)
Q Consensus 3 ~~~~~~~~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~ 40 (530)
+++.+=|.|..|+.-.+|.-+.+|..|++.|+.+....
T Consensus 33 ~p~~aGYTi~El~~L~RSsv~~QR~~al~~L~~Il~~~ 70 (73)
T PF08620_consen 33 DPEAAGYTIQELFHLSRSSVPSQRCIALQTLGRILYRA 70 (73)
T ss_pred CCCcCCcCHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 34456689999999999999999999999999886544
No 371
>COG2733 Predicted membrane protein [Function unknown]
Probab=40.42 E-value=3.4e+02 Score=26.06 Aligned_cols=22 Identities=14% Similarity=0.226 Sum_probs=10.2
Q ss_pred ccCCChHHHHHHHHHHHHHhhh
Q 009632 484 INNPHYLYRMTILRAISLLAPV 505 (530)
Q Consensus 484 ~~d~~~~vr~~a~~~l~~i~~~ 505 (530)
..+++..+|.....++..+.+.
T Consensus 310 ~e~~~s~l~~~l~~~~~~~Ge~ 331 (415)
T COG2733 310 YESEDSMLRKRLARAVQSVGEE 331 (415)
T ss_pred ccCchhHHHHHHHHHHHHHHHH
Confidence 3444444454444444444443
No 372
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.50 E-value=3.3e+02 Score=25.64 Aligned_cols=143 Identities=14% Similarity=0.130 Sum_probs=79.6
Q ss_pred HHHHHhhcC-CChHHHHHHHHhhHHhhhhhchhHHHh-----hHHHHHHHHh--cCCChHHHHHHHHHHHHHHhhhCh--
Q 009632 361 PIFLSLLKD-EFPDVRLNIISKLDQVNQVIGIDLLSQ-----SLLPAIVELA--EDRHWRVRLAIIEYIPLLASQLGV-- 430 (530)
Q Consensus 361 ~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~-----~l~~~l~~~~--~~~~~~~R~~~~~~l~~l~~~~~~-- 430 (530)
..++.++.| ....+|..+-.+++.+-..-|.+.... .-.+.+..++ ...++.+-+.++.+++.++-....
T Consensus 286 ~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhs 365 (461)
T KOG4199|consen 286 DTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHS 365 (461)
T ss_pred HHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchH
Confidence 456777777 445677666555655555555543322 2233333332 234577888888888777643321
Q ss_pred -hhHHHHHHHHHHHHhc-CC-cHHHHHHHHHHHHHHHHHhChh--HHhhhhHHHHHhhccCCChHHHHHHHHHHHHHh
Q 009632 431 -GFFDDKLGALCMQWLQ-DK-VYSIRDAAANNLKRLAEEFGPE--WAMQHITPQVLEMINNPHYLYRMTILRAISLLA 503 (530)
Q Consensus 431 -~~~~~~~~~~l~~~l~-d~-~~~Vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~ 503 (530)
.++..-.-....+.++ .| ...|...||..+..++...... .....=+..|++.....+...+..+-.++..+.
T Consensus 366 a~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~~h~tce~~akaALRDLG 443 (461)
T KOG4199|consen 366 AKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKANHETCEAAAKAALRDLG 443 (461)
T ss_pred HHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHhcCccHHHHHHHHHHhcC
Confidence 1222222223333332 33 3579999999999987653221 111223455666666677777888877777654
No 373
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.00 E-value=7.4e+02 Score=28.93 Aligned_cols=63 Identities=17% Similarity=0.197 Sum_probs=35.4
Q ss_pred cCCcHHHHHHHHHHHHHHHHHhChhHHh--hhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcCh
Q 009632 446 QDKVYSIRDAAANNLKRLAEEFGPEWAM--QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS 508 (530)
Q Consensus 446 ~d~~~~Vr~~a~~~l~~l~~~~~~~~~~--~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~ 508 (530)
.|...+.|-.|+..+..++...|+.|.. .+.+|.+..++.|.+..|-..+...+..+-+.+|.
T Consensus 1551 rss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q~e~~lGE 1615 (1621)
T KOG1837|consen 1551 RSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQKLIRQLEEVLGE 1615 (1621)
T ss_pred ccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHhch
Confidence 3445556666666666666666655543 55666666666666666555555544444444443
No 374
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=35.51 E-value=94 Score=23.94 Aligned_cols=33 Identities=27% Similarity=0.173 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 009632 433 FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAE 465 (530)
Q Consensus 433 ~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~ 465 (530)
|....++.+..-+.|++..|+..|.+.|-..+.
T Consensus 5 f~~w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~ 37 (115)
T PF14663_consen 5 FEDWGIELLVTQLYDPSPEVVAAALEILEEACE 37 (115)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 445566777777777777777777777766554
No 375
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=34.94 E-value=3.3e+02 Score=24.29 Aligned_cols=51 Identities=18% Similarity=0.232 Sum_probs=32.5
Q ss_pred hhHHHHHHHHhcCCC--hHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCC
Q 009632 396 QSLLPAIVELAEDRH--WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDK 448 (530)
Q Consensus 396 ~~l~~~l~~~~~~~~--~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~ 448 (530)
..++..|...+.++. ...-.+.+.+++.+++. ...+...+++.+..+-.+.
T Consensus 113 ~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~--RP~~~~~Il~~ll~~~~~~ 165 (239)
T PF11935_consen 113 NGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQ--RPQFMSRILPALLSFNPNL 165 (239)
T ss_dssp HHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHH--SGGGHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHhcCccc
Confidence 456667777766654 55666777777777764 2234667888888776543
No 376
>smart00139 MyTH4 Domain in Myosin and Kinesin Tails. Domain present twice in myosin-VIIa, and also present in 3 other myosins.
Probab=34.85 E-value=2.4e+02 Score=22.74 Aligned_cols=35 Identities=14% Similarity=0.172 Sum_probs=18.1
Q ss_pred hhhHHHHHh-hccCCChHHHHHHHHHHHHHhhhcCh
Q 009632 474 QHITPQVLE-MINNPHYLYRMTILRAISLLAPVMGS 508 (530)
Q Consensus 474 ~~i~~~l~~-~~~d~~~~vr~~a~~~l~~i~~~~~~ 508 (530)
+++.-.+.+ ..++|+......+.+.+.-++..+++
T Consensus 63 DEiy~QLiKQtt~Np~~~s~~rgW~Ll~l~~~~FpP 98 (144)
T smart00139 63 DEIYCQLIKQLTDNPSRQSEERGWELLYLCTSLFPP 98 (144)
T ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHHHhHcCC
Confidence 334443333 33445555555566666666666554
No 377
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=34.25 E-value=1.3e+02 Score=22.04 Aligned_cols=54 Identities=9% Similarity=0.134 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHHhhhcc--hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhh
Q 009632 178 MVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKL 232 (530)
Q Consensus 178 ~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~ 232 (530)
..|.+++..|+++....+- +.+.+.++..|.....| ...|+..+-+++..+-+.
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrt 59 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRT 59 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHh
Confidence 3467777777777776553 23445555555555554 445677666666666543
No 378
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=34.12 E-value=2.7e+02 Score=22.99 Aligned_cols=62 Identities=8% Similarity=-0.013 Sum_probs=40.5
Q ss_pred CHHHHHHHHHHHHHHHHHhC---CcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHH
Q 009632 254 SWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL 315 (530)
Q Consensus 254 ~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~ 315 (530)
+..+-+.+...|..+..... .....+.-++.+...+.+++++++..++.-+..+....+.+.
T Consensus 73 d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~ 137 (160)
T PF11841_consen 73 DASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSK 137 (160)
T ss_pred cchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHH
Confidence 34566666666666654321 112233456778888888999999999988888876655543
No 379
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=33.64 E-value=7.2e+02 Score=27.81 Aligned_cols=49 Identities=16% Similarity=0.224 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHh
Q 009632 294 AEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMG 345 (530)
Q Consensus 294 ~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~ 345 (530)
-++|.+|...+...+...+....++.+++.+. .|+++-+|......+..
T Consensus 882 vd~r~~a~~~~v~~~~~~~~~~~l~~~leil~---~~~dp~~R~~i~~ml~~ 930 (1180)
T KOG1932|consen 882 VDVRICAEELNVDLGGVDGSPDDLAYILEILE---NDPDPVIRHKILDMLSQ 930 (1180)
T ss_pred hhhHHHhhhhhhhhcccCCChHHHHHHhhhcc---cCcchHHHHHHHHHhhc
Confidence 46788887777777665444333344444442 46777788877776655
No 380
>COG2733 Predicted membrane protein [Function unknown]
Probab=32.13 E-value=4.7e+02 Score=25.19 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=16.4
Q ss_pred hHhccCCcHHHHHHHHHHHHhhcccc
Q 009632 325 KELSSDSSQHVRSALASVIMGMAPLL 350 (530)
Q Consensus 325 ~~~~~d~~~~vr~~~~~~l~~l~~~~ 350 (530)
..-.++++..+|...+..+..+.+.+
T Consensus 307 ~~D~e~~~s~l~~~l~~~~~~~Ge~l 332 (415)
T COG2733 307 KEDYESEDSMLRKRLARAVQSVGEEL 332 (415)
T ss_pred HhcccCchhHHHHHHHHHHHHHHHHH
Confidence 33345677777777777776665443
No 381
>COG5330 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.01 E-value=3.4e+02 Score=25.89 Aligned_cols=64 Identities=16% Similarity=0.084 Sum_probs=36.8
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhhhC-hhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 009632 399 LPAIVELAEDRHWRVRLAIIEYIPLLASQLG-VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKR 462 (530)
Q Consensus 399 ~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~-~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~ 462 (530)
...+..+.++++..-|..+...++...-.-+ ...-...+-+.+..++.|+...||..++.+|++
T Consensus 9 ~~~~i~~~~~a~~~eR~~~A~~l~~~~~~~~~sr~d~~~~~~l~~~Ll~d~s~~vrr~lA~aL~~ 73 (364)
T COG5330 9 DQDLIRLLEEASSGERALAARVLAFASLQRPLSREDMRQFEDLARPLLDDSSEEVRRELAAALAQ 73 (364)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHh
Confidence 3344555666666666555555544433333 222234455666666777777777777777765
No 382
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=31.68 E-value=2e+02 Score=20.80 Aligned_cols=57 Identities=19% Similarity=0.292 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhhcCCCC--hhHHHHHHHHHHHHHhh-hcchhhHHHHHHHHHHhhcCCc
Q 009632 159 ILKTELRSIYTQLCQDDM--PMVRRSAASNLGKFAAT-VEPAHLKTDIMSIFEDLTQDDQ 215 (530)
Q Consensus 159 ~~~~~l~~~l~~l~~d~~--~~vR~~a~~~l~~l~~~-~~~~~~~~~l~~~l~~~~~d~~ 215 (530)
+..++++..+.+..+|.+ -.||++|-++...+..- -.+.......+..|.+..+|++
T Consensus 13 e~i~q~~~lL~~Ii~DttVPRNIRraA~~a~e~L~~e~e~p~vRaAtaIsiLeeisnDPN 72 (93)
T COG1698 13 EKINQVMQLLDEIIQDTTVPRNIRRAAEEAKEALNNEGESPAVRAATAISILEEISNDPN 72 (93)
T ss_pred HHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCC
Confidence 355666777777777764 34888888877776542 1112222334555555556655
No 383
>KOG2842 consensus Interferon-related protein PC4 like [Cytoskeleton]
Probab=31.63 E-value=4.8e+02 Score=25.11 Aligned_cols=277 Identities=12% Similarity=0.075 Sum_probs=0.0
Q ss_pred CcHHHHHHHhcChhHHHHHHHhhcHHHHHH-hhChHhhhh---cccccccc-ccCCchHHHHHHHHHHhcccccCC----
Q 009632 9 YPIAVLIDELKNDDIQLRLNSIRRLSTIAR-ALGEERTRK---ELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVG---- 79 (530)
Q Consensus 9 ~~~~~l~~~l~~~~~~~R~~a~~~l~~~~~-~~~~~~~~~---~l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~---- 79 (530)
+.....+...+......|..+++.+.-.+. .+-++.+.+ .+...+.. .+.+..+-...++..+|.+.-.+|
T Consensus 60 ~~~~d~lde~~dk~AktR~~~le~i~lalt~r~l~~fi~e~~~tl~~~~~k~~~k~~sd~q~~a~~~~g~~~vqlg~~q~ 139 (427)
T KOG2842|consen 60 EKLKDDLDEVKDKSAKTRQEALEKIYLALTSRHLPEFILENRATLEDLLEKCLNKPKSDEQLLAAALIGLLCVQAGPGQE 139 (427)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhccCcch
Q ss_pred CccchhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccch-----------------h
Q 009632 80 GVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTA-----------------R 142 (530)
Q Consensus 80 ~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~-----------------r 142 (530)
+++......|.+..+..|.+..|.-.+.-+.....-.+........+...+..+.......+ -
T Consensus 140 ~ee~~~t~~~~~~li~~d~s~sv~~r~~ca~sl~v~~l~a~~d~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 219 (427)
T KOG2842|consen 140 EEEWTKTLGPFLALILDDESASIKARSICATSLGTACLIAEADIIELGSFLICLEESFGAVYLEDDETVVVCACQNLGLL 219 (427)
T ss_pred hhHHHhccchHHHHHhhccccchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcccCCCccccccchhHHH
Q ss_pred HHHHhHhhhhcCCC----ChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc------hhhHHHHHHHHHHhhc
Q 009632 143 VSACGLFHIAYPSA----PDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP------AHLKTDIMSIFEDLTQ 212 (530)
Q Consensus 143 ~~~~~~l~~l~~~~----~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~------~~~~~~l~~~l~~~~~ 212 (530)
..+...-+.+..-. ++..-.-+.|.+..++.....++|..+...+..++..... ....+.+...+..+.+
T Consensus 220 ~~~~~~~a~~Lti~~~~~~~~~~~~~~p~i~~lLs~~~vn~r~aa~et~a~l~e~~q~~~~~f~~~d~e~l~~~lr~lat 299 (427)
T KOG2842|consen 220 LTCLTAWSLLLTICPEALSEQLDAALAPKLPLLLSSERVNERIAAGETLALLFELAQDSEFDFIYPDMEQLLSTLRDLAT 299 (427)
T ss_pred HHHHHHHHHHHHcCccchhhHHHHHhccchHHHhccchhhhhhhhhhhHHHHHHHHhcccccccCCCHHHHHHHHHHHHH
Q ss_pred CCch-------hHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHH
Q 009632 213 DDQD-------SVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAY 285 (530)
Q Consensus 213 d~~~-------~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l 285 (530)
|.+. .++..+...+-...+ ........+.+-.+.+.=++|......-..-..+...+......+.++..+
T Consensus 300 dssKs~~kkdkR~qr~~fr~vl~~ie---e~~~pe~sVRfG~etl~LDSW~~~~~Y~~~~~VLGsGm~~~L~~nEflRdv 376 (427)
T KOG2842|consen 300 DSSKSRAKKDRRVQRSVFRDVLQTIE---ERDIPEESVRIGQETLYLDSWAKKLRYDTFKEVLGSGMSEQLQKNEFLRDV 376 (427)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHh---cccCchhheeecceeeehhHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHH
Q ss_pred HHh
Q 009632 286 VRL 288 (530)
Q Consensus 286 ~~~ 288 (530)
+.+
T Consensus 377 F~l 379 (427)
T KOG2842|consen 377 FGL 379 (427)
T ss_pred Hhc
No 384
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=31.47 E-value=4.4e+02 Score=24.72 Aligned_cols=174 Identities=10% Similarity=0.055 Sum_probs=0.0
Q ss_pred CCccchhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCCh
Q 009632 79 GGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD 158 (530)
Q Consensus 79 ~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~ 158 (530)
|-+.....++....-+...++++ -+.....+.+++...+++.....+...+..+.+.++...-....+.+..++...
T Consensus 40 gl~~~l~~ii~~c~v~~k~~ekd-le~vlnsi~sLi~~~~~e~~e~~v~a~~ekva~q~n~~~~~l~L~vLsnLfn~~-- 116 (378)
T KOG2753|consen 40 GLEEDLLMIIEACDVLAKIPEKD-LECVLNSIVSLIKNAPPEKVEEMVKAICEKVAKQPNDKTASLRLQVLSNLFNGV-- 116 (378)
T ss_pred CHHHHHHHHHHHhHHhhcCCcch-HHHHHHHHHHHHHhCCHHHhHHHHHHHHHHHhcCccCCCcccHHHHHHHHHhcc--
Q ss_pred HHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhH--HHHHHHHHHHHhhhcCch
Q 009632 159 ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSV--RLLAVEGCAALGKLLEPQ 236 (530)
Q Consensus 159 ~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~v--r~~a~~~l~~l~~~~~~~ 236 (530)
|....+|......+-.++...+--....-=+..+...+++-+..+ +..-..++..........
T Consensus 117 ---------------d~~~~aR~~Vy~~lv~la~~~~~~~~i~~~lk~~~~~lkew~~~vedqrel~r~v~~al~~~k~~ 181 (378)
T KOG2753|consen 117 ---------------DKPTPARYQVYMSLVTLAASCKLIEYIVPNLKQLDDWLKEWNISVEDQRELLRAVHKALKDNKSV 181 (378)
T ss_pred ---------------CCCchHHHHHHHHHHHHHhhcceeeeecccHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchh
Q ss_pred hhhhccHHHHHHhcCCCC-HHHHHHHHHHHHHHHH
Q 009632 237 DCVAHILPVIVNFSQDKS-WRVRYMVANQLYELCE 270 (530)
Q Consensus 237 ~~~~~~~~~l~~~~~d~~-~~vr~~~~~~l~~l~~ 270 (530)
+....++-.+......++ ...|..+.+++.....
T Consensus 182 ~~s~kvmt~lLgtyt~dnas~AredA~rcV~~av~ 216 (378)
T KOG2753|consen 182 DESSKVMTELLGTYTEDNASEAREDAMRCVVEAVK 216 (378)
T ss_pred hhHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHc
No 385
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=30.95 E-value=6.1e+02 Score=26.14 Aligned_cols=49 Identities=8% Similarity=0.004 Sum_probs=33.3
Q ss_pred hhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcC-hHHHHhhHHHHHHh
Q 009632 473 MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG-SEITCSRLLPVVIN 521 (530)
Q Consensus 473 ~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~-~~~~~~~~~p~l~~ 521 (530)
..+++..|.+..-+.+..+|..|..++..++...+ ...+..-+.-++..
T Consensus 469 ~~~lielL~R~tvHvd~~I~~~A~~aLk~la~~~p~~~~vi~~Fa~Fif~ 518 (552)
T PF14222_consen 469 FKSLIELLCRGTVHVDPNIRESAAQALKRLARDKPNRQQVITGFARFIFR 518 (552)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHee
Confidence 46677777777788888899999999988887763 33333333333333
No 386
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=30.70 E-value=8.1e+02 Score=27.50 Aligned_cols=87 Identities=17% Similarity=0.100 Sum_probs=40.7
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHhhhC--hhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHH---
Q 009632 398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA--- 472 (530)
Q Consensus 398 l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~--~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~--- 472 (530)
.+|.+...+...+...-..++..+..++..-- ...........+++.++. .+..-.-|++++..+...-..+.+
T Consensus 2048 ylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~l~~i~~~m~~mkK-~~~~~GLA~EalkR~~~r~~~eLVAQ~ 2126 (2235)
T KOG1789|consen 2048 YLPKFCTAMCLQNTSAPRSAIRVLHELSENQFCCDAMAQLPCIDGIMKSMKK-QPSLMGLAAEALKRLMKRNTGELVAQM 2126 (2235)
T ss_pred chHHHHHHHHhcCCcCcHHHHHHHHHHhhccHHHHHHhccccchhhHHHHHh-cchHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 35555544443333333566666666654210 000000011113333332 222334788888887765433322
Q ss_pred -hhhhHHHHHhhcc
Q 009632 473 -MQHITPQVLEMIN 485 (530)
Q Consensus 473 -~~~i~~~l~~~~~ 485 (530)
+-.++|.+.+++.
T Consensus 2127 LK~gLvpyLL~LLd 2140 (2235)
T KOG1789|consen 2127 LKCGLVPYLLQLLD 2140 (2235)
T ss_pred hccCcHHHHHHHhc
Confidence 2457888888764
No 387
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=30.67 E-value=2.8e+02 Score=22.19 Aligned_cols=94 Identities=9% Similarity=-0.024 Sum_probs=48.5
Q ss_pred cHHHHHHHHHHHHHHHHhhCHHH--HHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHH--HhHHHHHHHhhc
Q 009632 293 EAEVRIAAAGKVTKFCRILNPEL--AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATI--EQLLPIFLSLLK 368 (530)
Q Consensus 293 ~~~vr~~a~~~l~~~~~~~~~~~--~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~--~~l~~~l~~~l~ 368 (530)
+.+.++.....|..|+-.--+-. ..-.++..+...++.++.....-.+..++.+|..-....+. ..=+|.++.++.
T Consensus 30 ~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~ea~g~plii~~ls 109 (173)
T KOG4646|consen 30 NIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIREALGLPLIIFVLS 109 (173)
T ss_pred cHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHHHhcCCceEEeecC
Confidence 34555555555555543211110 01234555555566666666665555555554322211221 122566777788
Q ss_pred CCChHHHHHHHHhhHHhh
Q 009632 369 DEFPDVRLNIISKLDQVN 386 (530)
Q Consensus 369 d~~~~vr~~a~~~l~~l~ 386 (530)
++...+-..++..+..++
T Consensus 110 sp~e~tv~sa~~~l~~l~ 127 (173)
T KOG4646|consen 110 SPPEITVHSAALFLQLLE 127 (173)
T ss_pred CChHHHHHHHHHHHHHhc
Confidence 887777777776666554
No 388
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=30.66 E-value=86 Score=27.74 Aligned_cols=114 Identities=14% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHh-----------cCCcHH--------HHHHHHHHHHHHHH-------
Q 009632 412 RVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL-----------QDKVYS--------IRDAAANNLKRLAE------- 465 (530)
Q Consensus 412 ~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l-----------~d~~~~--------Vr~~a~~~l~~l~~------- 465 (530)
..|+.++-.+.+++..++-..+.+.+.-.++..+ .|+-+. =|.-|++++.+++-
T Consensus 81 ~lREnalV~laNisgqLdLs~~~e~I~~PildGLLHWaVcpsa~A~Dpfp~~~~~~~lSPqrlaLEaLcKLsV~e~NVDl 160 (257)
T PF12031_consen 81 QLRENALVTLANISGQLDLSDYPESIARPILDGLLHWAVCPSAEAQDPFPTAGPHSPLSPQRLALEALCKLSVIENNVDL 160 (257)
T ss_pred HHhhcceEeeeeeeeeeecccCchHHHHHHHHHHHHHHhccchhccCCCCCCCCCCCCCHHHHHHHHHHHhheeccCcce
Q ss_pred --HhChhHHhhhhHHHHHhhccCC-ChHHHHHHHHHHHHHhhhcChHHH----HhhHHHHHHhhccC
Q 009632 466 --EFGPEWAMQHITPQVLEMINNP-HYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASKD 525 (530)
Q Consensus 466 --~~~~~~~~~~i~~~l~~~~~d~-~~~vr~~a~~~l~~i~~~~~~~~~----~~~~~p~l~~~l~D 525 (530)
+-++....+.+...|.+++.++ +...|+.|+-.+.+++..-..--. .+..+..|..|++|
T Consensus 161 iLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~~Li~FiE~ 227 (257)
T PF12031_consen 161 ILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCISHLIAFIED 227 (257)
T ss_pred eeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHHHHHHHHHH
No 389
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=30.48 E-value=4.1e+02 Score=24.02 Aligned_cols=68 Identities=12% Similarity=0.143 Sum_probs=33.9
Q ss_pred hhHHHHHHHHhcCC-ccchhHHHHhHhhhhcCCCChHHH-----HHHHHHHHhhcCCCChhHHHHHHHHHHHHH
Q 009632 124 DWYIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPDILK-----TELRSIYTQLCQDDMPMVRRSAASNLGKFA 191 (530)
Q Consensus 124 ~~l~~~l~~l~~~~-~~~~r~~~~~~l~~l~~~~~~~~~-----~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~ 191 (530)
-++.|.+..-.++. -...|.++...++.+.+.-+++.. .+++|..+..++..+..-|..|...+..+.
T Consensus 94 lyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL 167 (262)
T PF04078_consen 94 LYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL 167 (262)
T ss_dssp GGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred hhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 34566665444443 244666777777777765444422 445566666555555445555555555443
No 390
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.32 E-value=4.3e+02 Score=26.54 Aligned_cols=29 Identities=17% Similarity=0.296 Sum_probs=18.0
Q ss_pred HHHhhHHhhhhhchhHHHhhHHHHHHHHh
Q 009632 378 IISKLDQVNQVIGIDLLSQSLLPAIVELA 406 (530)
Q Consensus 378 a~~~l~~l~~~~~~~~~~~~l~~~l~~~~ 406 (530)
..+.+..+...+|...+.-+++|...+++
T Consensus 416 i~ecLm~IaalYgenFillQ~fP~~sdLI 444 (1034)
T KOG4190|consen 416 IEECLMEIAALYGENFILLQFFPFCSDLI 444 (1034)
T ss_pred HHHHHHHHHHHhcchhhhhhhhHHHHHHH
Confidence 34456666666777766666777665543
No 391
>KOG1823 consensus DRIM (Down-regulated in metastasis)-like proteins [Defense mechanisms]
Probab=29.73 E-value=9.2e+02 Score=27.83 Aligned_cols=353 Identities=12% Similarity=0.077 Sum_probs=164.1
Q ss_pred HHHHHHH---HHHhhcCCCChhHHHHHHHHHHHHHhh-hcchhhHHHHHHH-HHHhhcC---CchhHHHHHHHHHHHHhh
Q 009632 160 LKTELRS---IYTQLCQDDMPMVRRSAASNLGKFAAT-VEPAHLKTDIMSI-FEDLTQD---DQDSVRLLAVEGCAALGK 231 (530)
Q Consensus 160 ~~~~l~~---~l~~l~~d~~~~vR~~a~~~l~~l~~~-~~~~~~~~~l~~~-l~~~~~d---~~~~vr~~a~~~l~~l~~ 231 (530)
....+.| ++...+......|...+..++..+... ++......+++-. -.+...+ .+-+.-....+++..+..
T Consensus 801 ~~~~l~~Fv~~l~d~l~~~~e~V~~~tLr~l~~l~~~~L~~~~~~s~lF~~~~~~~~~gs~~~~~el~q~~~k~~t~lI~ 880 (1364)
T KOG1823|consen 801 TVSQLVPFVSILCDSLLSIREKVITSTLRNLIDLLRHQLDQIESVSELFKLLARKRHSGSPSTNFELCQDSFKGFTALIA 880 (1364)
T ss_pred HHHHHHhHHHHHHHhhcchhhHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHH
Confidence 4444444 444445556777888888877776653 2222222221111 1112222 123445556666666666
Q ss_pred hcCchhhhhccHHHHHHhc-CCCCHHHHHHHH-HHHHHHHHHhCCc-ccccchHHHHHHhc-CCCcHHHHHHHHHHHHHH
Q 009632 232 LLEPQDCVAHILPVIVNFS-QDKSWRVRYMVA-NQLYELCEAVGPE-PTRMDLVPAYVRLL-RDNEAEVRIAAAGKVTKF 307 (530)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~~-~d~~~~vr~~~~-~~l~~l~~~~~~~-~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~ 307 (530)
..+.-...+..+.++.... .|....-|...+ ..+..+..- +.. .....++..+.+.+ .....+.|..+-..+-.+
T Consensus 881 ~~~s~~i~e~~ls~ll~~~~sD~~d~~rq~~~F~l~kAl~~r-~i~~~eL~~imd~v~e~~v~~~~~~~r~qcre~~~~~ 959 (1364)
T KOG1823|consen 881 QVGSVKIKEDVLSYLLARVESDISDPSRQGLAFSLLKALVSR-KIMLPELYEIMDKVRETMVRNHSKEIRLQCREVFYSF 959 (1364)
T ss_pred HhcceeeeHHHHHHHHHHhccccccchhHHHHHHHHHHHHhc-cccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 6665333444555544433 233223343332 222222211 000 00111222222222 122234444444433322
Q ss_pred HHhhC-HHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhh
Q 009632 308 CRILN-PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN 386 (530)
Q Consensus 308 ~~~~~-~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 386 (530)
....+ .....+.++..+..-.......+|..... -.+......+|..+--+.|..+.+|..+...+..+.
T Consensus 960 ~~s~s~~~k~~~~~V~~l~~~~esg~esvr~~~al---------l~e~~~~ffIal~~~~~nDd~~~~r~ma~~~i~~~~ 1030 (1364)
T KOG1823|consen 960 LGSKSKLEKQMEFMVDNLLYEVESGRESVRFSPAL---------LFEILSNFFIALVLVKINDDEPVCREMASMLIKVLY 1030 (1364)
T ss_pred HhhcchhhHHHHHHHHHhhhhhhcccchhcccHHH---------HHHHhhccchhhcccccccchHHHHHHHHHHHHHHh
Confidence 22111 11222333333322223334455511111 112233445666666788999999999988888877
Q ss_pred hhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHH--HHHHHHHH-------------hcCCcHH
Q 009632 387 QVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDK--LGALCMQW-------------LQDKVYS 451 (530)
Q Consensus 387 ~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~--~~~~l~~~-------------l~d~~~~ 451 (530)
.....+.+ +-+...+.....-....-|...+.+.+......|.+..... +.+++.+. ..+-.+.
T Consensus 1031 ~~~d~e~~-~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~e~~~~~~~~~~~lek~~~~~~s~~~~~~~~~~~~~~ 1109 (1364)
T KOG1823|consen 1031 DKEDNELF-NLLERLLHEWVGVHKRHKRFILVGATGKAEESIGFELTIQLFVLLSVLEKEIIVEVSDPIEAETEEVLFDK 1109 (1364)
T ss_pred CHhhhHHH-hHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHhhccceeeeecccccccHHHHHHHHHhhHH
Confidence 66554432 22333333332222333444447777777766665542211 12222111 1111111
Q ss_pred HHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcCh-HHHHhhHHHHHHhhccCCC
Q 009632 452 IRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS-EITCSRLLPVVINASKDRY 527 (530)
Q Consensus 452 Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~-~~~~~~~~p~l~~~l~D~~ 527 (530)
+............... ....+...+..+..-+..+||..+...++.+....+. +.....+.|.++..+.-+.
T Consensus 1110 ~lfs~lt~~t~~ikk~----~f~ki~~~v~~~~l~~~~~v~~s~~~lf~~l~a~~~~~e~~~~~i~~~ll~~L~~~~ 1182 (1364)
T KOG1823|consen 1110 VLFSWLTLVTENIKKG----GFSKIWSRVVGLLLMPHSWVRLSRAQLFGFLFAISDVSELRLRTIIPLLLAHLDYPE 1182 (1364)
T ss_pred HHHHHHHHHHHHHHhc----cHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHhcccHHHHHHHHhHHHHHHhCCCcc
Confidence 2222222211122221 1245667777778888889999999999888766554 4456677888887776544
No 392
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=29.71 E-value=1.7e+02 Score=23.45 Aligned_cols=30 Identities=20% Similarity=0.265 Sum_probs=14.2
Q ss_pred hhHHHHHhhccCCChHHHHHHHHHHHHHhh
Q 009632 475 HITPQVLEMINNPHYLYRMTILRAISLLAP 504 (530)
Q Consensus 475 ~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~ 504 (530)
.+.+++.+-+.+++...|.+..+++..+++
T Consensus 40 dL~~cIle~le~~~lN~R~nI~~fID~l~e 69 (139)
T PF12243_consen 40 DLWSCILEQLEKENLNTRINIFYFIDSLCE 69 (139)
T ss_pred HHHHHHHHHHhccchhhHHHHHHHHHHHHH
Confidence 344444444444444445444444444443
No 393
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=29.69 E-value=1.3e+02 Score=22.55 Aligned_cols=54 Identities=17% Similarity=0.066 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhhhChh---hHHHHHHHHHHHH--hcCCcHHHHHHHHHHHHHHHHHh
Q 009632 414 RLAIIEYIPLLASQLGVG---FFDDKLGALCMQW--LQDKVYSIRDAAANNLKRLAEEF 467 (530)
Q Consensus 414 R~~~~~~l~~l~~~~~~~---~~~~~~~~~l~~~--l~d~~~~Vr~~a~~~l~~l~~~~ 467 (530)
|...+..++.++.....- .....-+|.+++. ..|.+|-+|+.|+-++..++...
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n 61 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGN 61 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCC
Confidence 455666666665432110 0111235566554 35677889999999998888754
No 394
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=29.66 E-value=1.1e+02 Score=23.57 Aligned_cols=34 Identities=15% Similarity=0.184 Sum_probs=27.0
Q ss_pred HHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhh
Q 009632 355 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 388 (530)
Q Consensus 355 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 388 (530)
+..-.++.+.+.|.|++.+|...|++.|...+..
T Consensus 5 f~~w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~ 38 (115)
T PF14663_consen 5 FEDWGIELLVTQLYDPSPEVVAAALEILEEACED 38 (115)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 3445677888889999999999998888887754
No 395
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.01 E-value=9.9e+02 Score=27.99 Aligned_cols=76 Identities=9% Similarity=0.139 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcChHH--HHhhHHHHHHhhccCCCCC
Q 009632 452 IRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKDRYLN 529 (530)
Q Consensus 452 Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~~~--~~~~~~p~l~~~l~D~~~~ 529 (530)
|-..++-+++.+....+.+| ..+...++.-..+.+...|..|+..+..+...+|... ..++.+|++.++++|....
T Consensus 1520 v~~~li~~i~~~~~a~~~d~--~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~ 1597 (1621)
T KOG1837|consen 1520 VSKLLIAEIASDSVADKDDL--KPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDE 1597 (1621)
T ss_pred HHHHHHHHHHhhccCChhhh--HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHH
Confidence 33444445555444444433 3355555666777888888888888888888888653 4888888888888886543
No 396
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=28.84 E-value=4.9e+02 Score=24.40 Aligned_cols=167 Identities=14% Similarity=0.111 Sum_probs=68.4
Q ss_pred cHHHHHHHHHHHHHHHHh--hCHHHHHhhhhHhHhHhcc-CCcHHHHHHHHHHHHhhccccCHHHHHHh-HHHHHHHhhc
Q 009632 293 EAEVRIAAAGKVTKFCRI--LNPELAIQHILPCVKELSS-DSSQHVRSALASVIMGMAPLLGKDATIEQ-LLPIFLSLLK 368 (530)
Q Consensus 293 ~~~vr~~a~~~l~~~~~~--~~~~~~~~~l~~~l~~~~~-d~~~~vr~~~~~~l~~l~~~~~~~~~~~~-l~~~l~~~l~ 368 (530)
.-++|.+|++++..+... .+...+.+.++|.-..... +.... +++.+...-.....+.+..- ---++..++.
T Consensus 51 ~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~n----l~~~Ll~~~~~~~~dpy~~wfAa~il~hll~ 126 (312)
T PF04869_consen 51 PFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIAN----LLTALLDYDSDLSLDPYRCWFAAVILMHLLR 126 (312)
T ss_dssp -HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-----HHHHHT------SS-HHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhH----HHHHHHHhhccccCCHHHHHHHHHHHHHHHh
Confidence 468999999999988752 1111233333333322211 11111 33333221111111222111 1223444555
Q ss_pred CCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHh----c-CCChHHHHHHHHHHHHHHhhhCh--hhHH--HHHHH
Q 009632 369 DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA----E-DRHWRVRLAIIEYIPLLASQLGV--GFFD--DKLGA 439 (530)
Q Consensus 369 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~----~-~~~~~~R~~~~~~l~~l~~~~~~--~~~~--~~~~~ 439 (530)
|. +.-|+.+.+. ......-|.+. ..++..+..++ . +.+.+++...+..|..-...... ..|. ..-++
T Consensus 127 dn-~~~Ke~al~V-~~~~~~~ge~~--vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~ 202 (312)
T PF04869_consen 127 DN-PEAKEQALRV-TEGDESSGEEP--VTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQ 202 (312)
T ss_dssp T--HHHHHHHTT---EE--STTS----EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHH
T ss_pred cC-HHHHHHHHcc-cCCCCCCCCCc--ccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHH
Confidence 54 4445555443 11111112221 13444443332 2 45688888887777654332211 1111 11344
Q ss_pred HHHHH---hcCCcHHHHHHHHHHHHHHHHHh
Q 009632 440 LCMQW---LQDKVYSIRDAAANNLKRLAEEF 467 (530)
Q Consensus 440 ~l~~~---l~d~~~~Vr~~a~~~l~~l~~~~ 467 (530)
.+... -.+.+.-|+.-++-.||..+...
T Consensus 203 ~Li~~~~~~~~~~~~VqGL~A~LLGicyef~ 233 (312)
T PF04869_consen 203 SLIEFSNQSSSEDVLVQGLCAFLLGICYEFS 233 (312)
T ss_dssp HHHHHHS--TCCCHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHhhcCCCCcchHHHHHHHHHHHHHHhc
Confidence 44443 23566678888888888777644
No 397
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=28.29 E-value=1e+02 Score=19.06 Aligned_cols=33 Identities=12% Similarity=0.149 Sum_probs=19.3
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhh
Q 009632 161 KTELRSIYTQLCQDDMPMVRRSAASNLGKFAAT 193 (530)
Q Consensus 161 ~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~ 193 (530)
...+.+.+.+.+..+++..|...+.+++.+.+.
T Consensus 5 ~eYLKNvl~~fl~~~~~~~~~~llpvi~tlL~f 37 (46)
T PF01465_consen 5 LEYLKNVLLQFLESREPSEREQLLPVIATLLKF 37 (46)
T ss_dssp HHHHHHHHHHHHTTSS---HHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhcCCchhhHHHHHHHHHHHHCC
Confidence 345666777777666677777777666666543
No 398
>KOG1926 consensus Predicted regulator of rRNA gene transcription (MYB-binding protein) [Transcription]
Probab=28.06 E-value=8.9e+02 Score=27.12 Aligned_cols=68 Identities=15% Similarity=0.083 Sum_probs=51.4
Q ss_pred hcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhc
Q 009632 85 HVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAY 153 (530)
Q Consensus 85 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~ 153 (530)
...+.++..+.++ +..+|..|+..+..-...+.......+++.-+..-..++...+|.....+++.+.
T Consensus 73 k~~ldlf~klas~-l~~~r~~aa~~Ll~~lq~~~~ae~~~YvL~RLIrg~ss~resaRlgfs~~Ltev~ 140 (1129)
T KOG1926|consen 73 KEKLDLFTKLASS-LRPVRLAAAFQLLADLQELRDAEELSYVLNRLIRGLSSDRESARLGFSLILTEVL 140 (1129)
T ss_pred hHHHHHHHHHHhh-cHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhh
Confidence 4556677777766 8899999998888877777766677777766666666777788988888877766
No 399
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=27.66 E-value=4.2e+02 Score=23.21 Aligned_cols=67 Identities=18% Similarity=0.217 Sum_probs=44.8
Q ss_pred hhHHHHHHHHhcCCC-hHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Q 009632 396 QSLLPAIVELAEDRH-WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE 466 (530)
Q Consensus 396 ~~l~~~l~~~~~~~~-~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 466 (530)
+.+++.+....++.+ |.-|...+.++... ........+++++...+.|+..-|+.+.-.+|.++...
T Consensus 117 ~~li~~~~a~~~~~~~w~rraaiv~~l~~~----k~~~~~~~if~i~E~~l~d~e~fV~KAigWaLrq~~k~ 184 (222)
T COG4912 117 PDLIEEWAADAEEDNRWERRAAIVHQLVYK----KKTLDLLEIFEIIELLLGDKEFFVQKAIGWALRQIGKH 184 (222)
T ss_pred HHHHHHHHhccccchHHHHHHHHHHHHHHh----cCccchhHHHHHHHHHccChHHHHHHHHHHHHHHHHhh
Confidence 455555533334434 55555555554443 23334456899999999999999999999999998873
No 400
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=26.69 E-value=5.3e+02 Score=24.04 Aligned_cols=12 Identities=17% Similarity=0.141 Sum_probs=5.3
Q ss_pred HHHHHHhhcCCC
Q 009632 164 LRSIYTQLCQDD 175 (530)
Q Consensus 164 l~~~l~~l~~d~ 175 (530)
+.|.+..++.|+
T Consensus 44 l~~~~~~l~~~~ 55 (322)
T cd07920 44 ILPHVVELMVDP 55 (322)
T ss_pred HHHhHHHHhcCc
Confidence 444444444443
No 401
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=26.27 E-value=9.2e+02 Score=26.70 Aligned_cols=89 Identities=16% Similarity=0.254 Sum_probs=52.9
Q ss_pred HHHHhHHHHHHHhhc-CCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHH-----HHHhcCCChHHHHHHHHHHHHHHhh
Q 009632 354 ATIEQLLPIFLSLLK-DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAI-----VELAEDRHWRVRLAIIEYIPLLASQ 427 (530)
Q Consensus 354 ~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l-----~~~~~~~~~~~R~~~~~~l~~l~~~ 427 (530)
.+.+.+-.++.+..+ +....||...+..+..+..... +.+.++|+..+ ...--+++.++|..+.+.+.+++..
T Consensus 425 gwiq~l~~lm~r~~r~~s~~~Vrik~~~~l~~~~l~nr-~~yeeEIL~~VvL~~lshi~L~~~~qvr~l~~~~l~N~a~~ 503 (1697)
T KOG3687|consen 425 GWIQNLQALMERFFRSESRGAVRIKVLDVLSFVLLINR-QFYEEEILNSVVLSQLSHIPLDKDHQVRKLATQLLVNLAEG 503 (1697)
T ss_pred hHHHHHHHHHHHHHHhcccceEEEeeHHHHHHHHhhhh-hhhHHHhhhheeeEeeccccccchhHHHHHHHHHHHHHHhh
Confidence 344444445555555 5566778777777776654322 12223444432 2223356789999999999999998
Q ss_pred hChhhHHH--HHHHHHHH
Q 009632 428 LGVGFFDD--KLGALCMQ 443 (530)
Q Consensus 428 ~~~~~~~~--~~~~~l~~ 443 (530)
+....+.+ .++..+++
T Consensus 504 C~t~~~~~lldi~EA~~~ 521 (1697)
T KOG3687|consen 504 CHTHHFNSLLDIIEAVMA 521 (1697)
T ss_pred cchhcchhHHHHHHHHHh
Confidence 87665542 33444443
No 402
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=25.20 E-value=6.8e+02 Score=24.79 Aligned_cols=146 Identities=14% Similarity=0.110 Sum_probs=76.0
Q ss_pred hHHHHHHhcCCCc--HHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCC-cHHHHHHHHHHHHhhccccCHH---H
Q 009632 281 LVPAYVRLLRDNE--AEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDS-SQHVRSALASVIMGMAPLLGKD---A 354 (530)
Q Consensus 281 l~~~l~~~l~d~~--~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~~---~ 354 (530)
-+..+++++..++ ..||..+.+.|.++...-..+.+...-+..+..+.+.. -.......+..+..+.+..... -
T Consensus 181 ~lD~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~L 260 (832)
T KOG3678|consen 181 GLDLLLRMFQAPNLETSVRVEAARLLEQILVAENRDRVARIGLGVILNLAKEREPVELARSVAGILEHMFKHSEETCQRL 260 (832)
T ss_pred hHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhhHHhhccchhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 3455666666554 46799999988888765444433333344444444432 2344444445554443322111 0
Q ss_pred HHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh----HHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 009632 355 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID----LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 426 (530)
Q Consensus 355 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~ 426 (530)
.....+..++-..+-.++.+-..+.-+|+++.-.-|.. .+.+.+-..|..+....+.-.|..|+-++..++.
T Consensus 261 vaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat 336 (832)
T KOG3678|consen 261 VAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLAT 336 (832)
T ss_pred HhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhh
Confidence 11122233333445555777667777777765443321 1223333344445555567777777777766654
No 403
>PHA02855 anti-apoptotic membrane protein; Provisional
Probab=25.11 E-value=3.8e+02 Score=22.03 Aligned_cols=37 Identities=19% Similarity=0.190 Sum_probs=28.0
Q ss_pred HHHHHHHHHHh-hcCCCChhHHHHHHHHHHHHHhhhcc
Q 009632 160 LKTELRSIYTQ-LCQDDMPMVRRSAASNLGKFAATVEP 196 (530)
Q Consensus 160 ~~~~l~~~l~~-l~~d~~~~vR~~a~~~l~~l~~~~~~ 196 (530)
....+...+.+ +..|..|.|+-++...++-+++..+.
T Consensus 73 nI~~IK~~iie~L~~D~rPSVKLA~iSLlSiIiek~~~ 110 (180)
T PHA02855 73 NINDIKSQIIESLNNDNRPSVKLAIISLISMIAEKKGY 110 (180)
T ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhcc
Confidence 34455555554 45899999999999999999887765
No 404
>PF07531 TAFH: NHR1 homology to TAF; InterPro: IPR003894 The TAF homology (TAFH) or Nervy homology region 1 (NHR1) domain is a domain of 95-100 amino acids present in eukaryotic proteins of the MTG/ETO family and whereof the core ~75-80 residues occur in TAF proteins. The transcription initiation TFIID complex is composed of TATA binding protein (TBP) and a number of TBP-associated factors (TAFs). The TAFH/NHR1 domain is named after fruit fly TATA-box-associated factor 110 (TAF110), human TAF105 and TAF130, and the fruit fly protein Nervy, which is a homologue of human MTG8/ETO [, ]. The human eight twenty-one (ETO or MTG8) and related myeloid transforming gene products MTGR1 and MTG16 as well as the Nervy protein contain the NHR1-4 domains. The NHR1/TAFH domain occurs in the N-terminal part of these proteins, while a MYND-type zinc finger forms the NHR4 domain []. The TAFH/NHR1 domain can be involved in protein-protein interactions, e.g in MTG8/ETO with HSP90 and Gfi-1 []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2P6V_A 2KNH_A 2PP4_A 2H7B_A.
Probab=23.92 E-value=2.5e+02 Score=20.83 Aligned_cols=9 Identities=22% Similarity=0.467 Sum_probs=4.4
Q ss_pred hhHHHHHHh
Q 009632 513 SRLLPVVIN 521 (530)
Q Consensus 513 ~~~~p~l~~ 521 (530)
++++|+|++
T Consensus 60 P~lvPFLK~ 68 (96)
T PF07531_consen 60 PYLVPFLKK 68 (96)
T ss_dssp TTHHHHHHH
T ss_pred cchHHHHHH
Confidence 445555543
No 405
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.76 E-value=2.9e+02 Score=20.03 Aligned_cols=70 Identities=16% Similarity=0.249 Sum_probs=40.0
Q ss_pred HHHhHHHHHHHhhcCCC--hHHHHHHHHhhHHhhhhhchhHH-HhhHHHHHHHHhcCCC--hHHHHHHHHHHHHH
Q 009632 355 TIEQLLPIFLSLLKDEF--PDVRLNIISKLDQVNQVIGIDLL-SQSLLPAIVELAEDRH--WRVRLAIIEYIPLL 424 (530)
Q Consensus 355 ~~~~l~~~l~~~l~d~~--~~vr~~a~~~l~~l~~~~~~~~~-~~~l~~~l~~~~~~~~--~~~R~~~~~~l~~l 424 (530)
...+.+.++....+|.. .++|.+|-++...+...-....+ ....+..|.+..+|+| ...|...-..++.+
T Consensus 14 ~i~q~~~lL~~Ii~DttVPRNIRraA~~a~e~L~~e~e~p~vRaAtaIsiLeeisnDPNmP~h~RT~iw~vis~L 88 (93)
T COG1698 14 KINQVMQLLDEIIQDTTVPRNIRRAAEEAKEALNNEGESPAVRAATAISILEEISNDPNMPLHARTLIWNVISQL 88 (93)
T ss_pred HHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Confidence 34556666777777763 57888887777666542111111 1345666777777776 34555544444443
No 406
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.48 E-value=1.3e+03 Score=27.29 Aligned_cols=104 Identities=14% Similarity=0.115 Sum_probs=59.9
Q ss_pred hcCCChHHHHHHHHhhHHhhhhhchh----HHH---hhHHHHHHHHhcC-----CChHHHHHHHHHHHHHHhhhChh---
Q 009632 367 LKDEFPDVRLNIISKLDQVNQVIGID----LLS---QSLLPAIVELAED-----RHWRVRLAIIEYIPLLASQLGVG--- 431 (530)
Q Consensus 367 l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~---~~l~~~l~~~~~~-----~~~~~R~~~~~~l~~l~~~~~~~--- 431 (530)
..|....||..++..+=.+....|.. ++. ..++|.+-..-.+ .+.....+..+++..++..+..-
T Consensus 1183 ~~~~~~~vr~~al~vlF~il~~~g~~F~~~~We~v~~~~fpIF~~~~~~~~~~~~~eW~~tT~~~Al~~~v~lf~~~~~~ 1262 (1514)
T KOG0929|consen 1183 INDYRLEVRKRALEVLFDILKEHGDDFSKEFWEDVFRILFPIFDNVKLDEDESEKDEWLSTTCNHALQALVDLFTQFFKQ 1262 (1514)
T ss_pred hhccHHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHheeecccccCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34778899999999888887776643 221 1222322211111 11134555555655555543321
Q ss_pred --hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh
Q 009632 432 --FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE 470 (530)
Q Consensus 432 --~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~ 470 (530)
...+.++..+..+..-++..+-.....|+..+....|..
T Consensus 1263 l~~lL~~~~~ll~~ci~~~n~~la~~g~~cl~~l~~~n~~~ 1303 (1514)
T KOG0929|consen 1263 LNNLLPKVLGLLVGCIKQDNQQLARIGTSCLLQLVSSNGEK 1303 (1514)
T ss_pred HHHHHHHHHHHHHHHhcCcchhhHHhHHHHHHHHHHhcccc
Confidence 222344444555566777888888888888888777654
No 407
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=23.11 E-value=1e+03 Score=27.12 Aligned_cols=17 Identities=24% Similarity=0.298 Sum_probs=10.5
Q ss_pred CcHHHHHHHHHHHHhhc
Q 009632 331 SSQHVRSALASVIMGMA 347 (530)
Q Consensus 331 ~~~~vr~~~~~~l~~l~ 347 (530)
++.+||..+.+++..+.
T Consensus 902 PDqeVR~~AVqwi~~ls 918 (1639)
T KOG0905|consen 902 PDQEVRAHAVQWIARLS 918 (1639)
T ss_pred CcHHHHHHHHHHHHhcC
Confidence 45566666666666654
No 408
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=22.99 E-value=2.3e+02 Score=20.69 Aligned_cols=59 Identities=15% Similarity=0.155 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHhhhChh--hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhH
Q 009632 412 RVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW 471 (530)
Q Consensus 412 ~~R~~~~~~l~~l~~~~~~~--~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~ 471 (530)
..|.+++-.|+.+.....-. .+...++..+-...+| ...|+..+=++++.+-+.....|
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH~D~W 64 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTHQDTW 64 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHTSTTH
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCcccH
Confidence 46778888888888765421 2444445555555565 55689999999999988877665
No 409
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=22.73 E-value=5.9e+02 Score=23.19 Aligned_cols=64 Identities=31% Similarity=0.345 Sum_probs=43.6
Q ss_pred CCCCCcCcHHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhccccccccccCCchHHHHHHHHHHhcc
Q 009632 3 MVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVF 74 (530)
Q Consensus 3 ~~~~~~~~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~~~~~l~~~ 74 (530)
.+++.+..+..|...++.+|+..| ..-+.|++. .-..++|+|.+..+.+ ++.+-.++.+.|..+
T Consensus 7 ~g~dcl~~LkdL~r~lr~dd~~~~-~v~r~lg~~------~iv~~DLiPiL~~~~~-~~~l~~~~l~LLV~L 70 (266)
T PF04821_consen 7 KGDDCLECLKDLKRFLRRDDEDQR-DVRRQLGEW------NIVQKDLIPILISYKD-DDKLFLACLRLLVNL 70 (266)
T ss_pred cCHhHHHHHHHHHHHHHHhCcchH-HHHHHHHHh------chhhhhHHHHHHhccC-chHHHHHHHHHHHHh
Confidence 567888889999999999998887 444444432 2345689998887554 555555555555443
No 410
>COG5330 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.58 E-value=5.2e+02 Score=24.70 Aligned_cols=63 Identities=19% Similarity=0.104 Sum_probs=35.9
Q ss_pred HHHHHHHhcCCccchhHHHHhHhhhhcCC--CChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHH
Q 009632 127 IPLVKRLAAGEWFTARVSACGLFHIAYPS--APDILKTELRSIYTQLCQDDMPMVRRSAASNLGK 189 (530)
Q Consensus 127 ~~~l~~l~~~~~~~~r~~~~~~l~~l~~~--~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~ 189 (530)
...+..+.++.+..-|..+...++..... ++....+++.+.+..++.|+++.+|..++.+|+.
T Consensus 9 ~~~~i~~~~~a~~~eR~~~A~~l~~~~~~~~~sr~d~~~~~~l~~~Ll~d~s~~vrr~lA~aL~~ 73 (364)
T COG5330 9 DQDLIRLLEEASSGERALAARVLAFASLQRPLSREDMRQFEDLARPLLDDSSEEVRRELAAALAQ 73 (364)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHh
Confidence 34444555555555555444444433332 2344566666777777777777777777666655
No 411
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=22.26 E-value=6.5e+02 Score=23.53 Aligned_cols=106 Identities=13% Similarity=0.106 Sum_probs=68.8
Q ss_pred HHHhhcCCChHHHHHHHHhhHHhhhhhc---hhHHH---hhHHHH-HHHHhcCCChHHHHHHHHHHHHHHhhhChhhHH-
Q 009632 363 FLSLLKDEFPDVRLNIISKLDQVNQVIG---IDLLS---QSLLPA-IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD- 434 (530)
Q Consensus 363 l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~---~~l~~~-l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~- 434 (530)
+..+++-++.++-.-|.+++..+..... .+.+. +.+.+. -..++.+.++-+|..+...++.+...-......
T Consensus 171 FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kllg~llldr~N~~~M~ 250 (342)
T KOG1566|consen 171 FFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLKLLGELLLDRSNSAVMT 250 (342)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHHhHHHHHhCCCcHHHHH
Confidence 4445555666666666666666543221 11111 223333 456788899999999999999876433222221
Q ss_pred -----HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC
Q 009632 435 -----DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG 468 (530)
Q Consensus 435 -----~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~ 468 (530)
..-+..++.++.|+..++...|.+....++....
T Consensus 251 kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpn 289 (342)
T KOG1566|consen 251 KYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPN 289 (342)
T ss_pred HHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCC
Confidence 2346678899999999999999999888776653
Done!