Query 009632
Match_columns 530
No_of_seqs 220 out of 1967
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 09:32:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009632.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009632hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b3u_A Protein (protein phosph 100.0 3.3E-58 1.1E-62 472.6 50.8 528 3-530 4-535 (588)
2 1b3u_A Protein (protein phosph 100.0 1.4E-49 4.8E-54 408.4 41.2 488 16-504 94-587 (588)
3 4fdd_A Transportin-1; heat rep 100.0 7.4E-34 2.5E-38 303.0 48.8 515 11-527 130-724 (852)
4 1u6g_C TIP120 protein, CAND1; 100.0 9.4E-34 3.2E-38 313.7 39.1 509 11-520 50-695 (1230)
5 4fdd_A Transportin-1; heat rep 100.0 3.9E-33 1.3E-37 297.4 41.9 478 49-529 91-644 (852)
6 2bpt_A Importin beta-1 subunit 100.0 3.3E-32 1.1E-36 291.8 46.3 513 11-525 136-734 (861)
7 1u6g_C TIP120 protein, CAND1; 100.0 8.4E-33 2.9E-37 306.1 39.2 515 9-525 6-621 (1230)
8 2bpt_A Importin beta-1 subunit 100.0 9.4E-32 3.2E-36 288.3 41.9 514 12-527 98-693 (861)
9 1qgr_A Protein (importin beta 100.0 4.3E-30 1.5E-34 276.0 46.7 514 11-526 130-746 (876)
10 1qgr_A Protein (importin beta 100.0 2E-29 6.7E-34 270.9 42.5 516 12-528 175-856 (876)
11 1ibr_B P95, importin beta-1 su 99.9 8.8E-24 3E-28 209.8 34.0 312 155-468 82-440 (462)
12 2vgl_B AP-2 complex subunit be 99.9 7.2E-24 2.5E-28 215.2 32.8 473 10-508 14-497 (591)
13 1ibr_B P95, importin beta-1 su 99.9 1E-23 3.6E-28 209.3 31.6 323 200-524 88-461 (462)
14 2vgl_B AP-2 complex subunit be 99.9 1.2E-22 4.1E-27 206.2 36.5 476 3-503 43-531 (591)
15 2z6g_A B-catenin; FULL-length, 99.9 4E-22 1.4E-26 208.4 35.9 494 10-507 116-666 (780)
16 2jdq_A Importin alpha-1 subuni 99.9 6.7E-22 2.3E-26 195.5 33.7 340 88-427 22-391 (450)
17 1wa5_B Importin alpha subunit; 99.9 1.7E-21 5.7E-26 196.3 33.2 346 162-507 129-513 (530)
18 2jdq_A Importin alpha-1 subuni 99.9 2.7E-21 9.4E-26 191.1 33.7 378 127-504 22-443 (450)
19 2z6h_A Catenin beta-1, beta-ca 99.9 1.3E-20 4.6E-25 193.9 38.4 470 57-526 24-549 (644)
20 1jdh_A Beta-catenin; beta-cate 99.9 4.7E-21 1.6E-25 193.6 33.3 459 44-502 13-528 (529)
21 3now_A UNC-45 protein, SD10334 99.9 1.6E-19 5.3E-24 183.9 43.6 467 60-526 217-762 (810)
22 3now_A UNC-45 protein, SD10334 99.9 1.1E-19 3.6E-24 185.2 40.5 482 23-505 218-783 (810)
23 2z6h_A Catenin beta-1, beta-ca 99.9 3E-20 1E-24 191.3 36.1 480 8-487 13-549 (644)
24 1wa5_B Importin alpha subunit; 99.9 1.2E-20 4.1E-25 190.1 32.0 382 85-466 86-511 (530)
25 4b8j_A Importin subunit alpha- 99.9 2.9E-20 1E-24 187.3 34.4 348 163-510 117-502 (528)
26 2z6g_A B-catenin; FULL-length, 99.9 1.3E-20 4.5E-25 196.9 31.4 475 51-529 118-649 (780)
27 1jdh_A Beta-catenin; beta-cate 99.9 2.3E-20 8E-25 188.5 27.5 455 9-463 17-528 (529)
28 4b8j_A Importin subunit alpha- 99.9 1.5E-19 5E-24 182.2 31.3 380 86-465 74-496 (528)
29 1w63_A Adapter-related protein 99.9 3.9E-19 1.3E-23 181.0 30.5 448 56-527 79-561 (618)
30 1w63_A Adapter-related protein 99.8 4.4E-19 1.5E-23 180.6 28.9 476 4-504 65-577 (618)
31 3ul1_B Importin subunit alpha- 99.8 5.1E-17 1.7E-21 162.0 31.9 341 164-504 101-478 (510)
32 3tpo_A Importin subunit alpha- 99.8 9.4E-17 3.2E-21 161.1 33.6 342 163-504 119-497 (529)
33 2vgl_A Adaptor protein complex 99.8 1.1E-16 3.8E-21 162.3 33.1 473 12-506 38-552 (621)
34 3ul1_B Importin subunit alpha- 99.8 1.2E-16 4.2E-21 159.3 31.8 377 88-464 59-477 (510)
35 3tpo_A Importin subunit alpha- 99.8 3E-16 1E-20 157.4 33.6 379 86-464 76-496 (529)
36 2vgl_A Adaptor protein complex 99.8 4E-17 1.4E-21 165.5 27.0 479 4-503 69-588 (621)
37 1oyz_A Hypothetical protein YI 99.8 3.6E-17 1.2E-21 150.3 21.3 251 165-460 25-277 (280)
38 1wa5_C Importin alpha RE-expor 99.8 5.6E-15 1.9E-19 159.1 39.0 509 9-526 5-653 (960)
39 1wa5_C Importin alpha RE-expor 99.8 6.9E-15 2.4E-19 158.3 39.7 490 13-505 39-671 (960)
40 1oyz_A Hypothetical protein YI 99.8 1.8E-16 6.2E-21 145.6 23.1 253 87-383 24-278 (280)
41 2x1g_F Cadmus; transport prote 99.7 8.6E-15 2.9E-19 158.3 28.0 487 7-507 5-618 (971)
42 2qk2_A LP04448P; mini spindles 99.7 3.8E-15 1.3E-19 133.3 20.7 204 234-479 8-218 (242)
43 2x19_B Importin-13; nuclear tr 99.7 3.7E-13 1.2E-17 145.7 40.2 491 3-507 18-602 (963)
44 2qk2_A LP04448P; mini spindles 99.7 3.6E-15 1.2E-19 133.4 20.1 193 317-513 13-214 (242)
45 3ltm_A Alpha-REP4; protein eng 99.7 9.7E-15 3.3E-19 127.8 20.2 185 164-388 20-204 (211)
46 3m1i_C Exportin-1; heat repeat 99.7 6.4E-13 2.2E-17 144.3 38.3 491 7-507 14-621 (1049)
47 3ltm_A Alpha-REP4; protein eng 99.7 1.1E-14 3.9E-19 127.4 20.1 184 242-465 20-203 (211)
48 3ltj_A Alpharep-4; protein eng 99.6 1.9E-14 6.5E-19 124.9 20.9 186 161-386 12-197 (201)
49 3m1i_C Exportin-1; heat repeat 99.6 5.9E-13 2E-17 144.6 37.3 445 55-509 24-574 (1049)
50 2x1g_F Cadmus; transport prote 99.6 3E-12 1E-16 138.5 42.3 492 24-523 204-838 (971)
51 2x19_B Importin-13; nuclear tr 99.6 4.7E-12 1.6E-16 137.0 43.4 480 20-507 69-652 (963)
52 3ltj_A Alpharep-4; protein eng 99.6 2.5E-14 8.4E-19 124.2 20.6 185 200-424 12-196 (201)
53 4hxt_A De novo protein OR329; 99.6 3.4E-13 1.2E-17 121.6 21.1 227 282-508 4-245 (252)
54 1xm9_A Plakophilin 1; armadill 99.6 8.3E-13 2.8E-17 129.4 25.1 337 166-505 5-450 (457)
55 2qk1_A Protein STU2; STU2P, XM 99.6 1.8E-13 6.2E-18 121.8 18.3 162 162-327 59-234 (249)
56 2qk1_A Protein STU2; STU2P, XM 99.6 1.4E-13 4.9E-18 122.4 17.2 193 201-393 15-226 (249)
57 4db8_A Armadillo-repeat protei 99.5 4.7E-13 1.6E-17 120.7 19.8 225 280-504 12-251 (252)
58 3l6x_A Catenin delta-1; cateni 99.5 1.4E-11 4.7E-16 121.6 30.7 149 357-505 307-477 (584)
59 3opb_A SWI5-dependent HO expre 99.5 1.1E-10 3.9E-15 116.9 37.4 408 88-504 257-728 (778)
60 4hxt_A De novo protein OR329; 99.5 1.1E-12 3.9E-17 118.2 20.7 224 165-388 4-242 (252)
61 3ibv_A Exportin-T; karyopherin 99.5 1.5E-11 5.1E-16 130.8 31.6 293 213-508 204-570 (980)
62 4hat_C Exportin-1; heat repeat 99.5 3.2E-10 1.1E-14 120.7 41.3 494 7-510 14-624 (1023)
63 4hat_C Exportin-1; heat repeat 99.5 1.9E-10 6.5E-15 122.5 38.6 438 59-510 28-575 (1023)
64 4db8_A Armadillo-repeat protei 99.5 6.3E-13 2.2E-17 119.8 16.6 222 165-386 14-250 (252)
65 1xm9_A Plakophilin 1; armadill 99.5 1.9E-11 6.3E-16 119.9 26.7 178 88-268 4-218 (457)
66 3ibv_A Exportin-T; karyopherin 99.5 7.8E-11 2.7E-15 125.3 33.2 492 9-507 6-631 (980)
67 3opb_A SWI5-dependent HO expre 99.5 2.2E-10 7.5E-15 114.8 34.0 460 58-525 181-708 (778)
68 3nmz_A APC variant protein; pr 99.5 3.3E-11 1.1E-15 116.2 27.0 247 260-507 167-453 (458)
69 3l6x_A Catenin delta-1; cateni 99.5 1.3E-10 4.6E-15 114.6 31.7 344 83-426 45-476 (584)
70 1lrv_A LRV, leucine-rich repea 99.5 2.4E-14 8.3E-19 125.1 4.3 186 170-461 57-242 (244)
71 1lrv_A LRV, leucine-rich repea 99.4 2.2E-13 7.7E-18 119.0 6.5 188 91-383 55-242 (244)
72 4ady_A RPN2, 26S proteasome re 99.4 3.9E-10 1.3E-14 115.5 30.7 300 97-424 406-717 (963)
73 4ady_A RPN2, 26S proteasome re 99.4 1.8E-10 6.1E-15 117.9 27.9 308 165-502 394-717 (963)
74 3nmz_A APC variant protein; pr 99.4 4.5E-10 1.6E-14 108.3 27.1 305 162-466 69-451 (458)
75 2iw3_A Elongation factor 3A; a 99.3 1.1E-09 3.6E-14 113.7 30.1 259 162-429 53-327 (986)
76 4db6_A Armadillo repeat protei 99.3 1E-10 3.5E-15 102.0 19.1 185 320-504 13-209 (210)
77 4db6_A Armadillo repeat protei 99.3 7.4E-11 2.5E-15 102.9 17.4 186 162-347 11-208 (210)
78 3a6p_A Exportin-5; exportin-5, 99.3 7.9E-09 2.7E-13 112.9 36.7 499 1-508 1-661 (1204)
79 2iw3_A Elongation factor 3A; a 99.3 3.8E-11 1.3E-15 124.5 15.7 302 4-312 9-327 (986)
80 3gjx_A Exportin-1; transport, 99.3 5.5E-08 1.9E-12 103.3 38.8 306 201-510 205-601 (1073)
81 3gjx_A Exportin-1; transport, 99.3 1.1E-07 3.9E-12 100.9 40.7 493 7-510 26-650 (1073)
82 2of3_A ZYG-9; multifunctional 99.2 2.4E-09 8.4E-14 93.8 19.3 139 172-316 96-243 (266)
83 3oc3_A Helicase MOT1, MOT1; re 99.2 6.8E-10 2.3E-14 104.2 16.3 257 164-461 175-432 (800)
84 3tjz_B Coatomer subunit gamma; 99.1 9.3E-10 3.2E-14 101.4 15.9 291 154-461 59-349 (355)
85 3nmw_A APC variant protein; AR 99.1 1E-08 3.4E-13 95.9 22.8 216 293-508 97-338 (354)
86 3oc3_A Helicase MOT1, MOT1; re 99.1 7.3E-09 2.5E-13 97.4 19.0 254 11-305 176-432 (800)
87 3nmw_A APC variant protein; AR 99.1 7.2E-09 2.4E-13 96.9 19.3 215 254-468 97-337 (354)
88 3b2a_A TON_1937, putative unch 99.1 3.4E-08 1.2E-12 82.3 20.9 214 162-379 32-253 (265)
89 3a6p_A Exportin-5; exportin-5, 99.1 1.2E-07 4E-12 103.8 31.7 454 59-521 25-632 (1204)
90 2of3_A ZYG-9; multifunctional 99.1 7.2E-08 2.4E-12 84.6 23.8 180 324-510 51-242 (266)
91 4ffb_C Protein STU2; tubulin f 99.1 1.5E-09 5.3E-14 98.7 13.3 179 326-507 16-215 (278)
92 2db0_A 253AA long hypothetical 99.0 1.5E-07 5.2E-12 74.9 21.7 216 85-309 31-246 (253)
93 4ffb_C Protein STU2; tubulin f 99.0 9.5E-09 3.3E-13 93.5 17.6 181 287-470 16-217 (278)
94 2db0_A 253AA long hypothetical 99.0 2.3E-07 7.7E-12 74.0 22.2 214 201-425 31-245 (253)
95 1xqr_A HSPBP1 protein; armadil 99.0 4.4E-08 1.5E-12 88.9 20.8 171 295-466 55-239 (296)
96 3tjz_B Coatomer subunit gamma; 99.0 4E-08 1.4E-12 90.6 19.9 285 200-501 66-350 (355)
97 1xqr_A HSPBP1 protein; armadil 99.0 3.5E-08 1.2E-12 89.6 18.8 172 334-505 55-239 (296)
98 3l9t_A Putative uncharacterize 99.0 2.3E-08 7.8E-13 84.5 15.1 139 123-271 69-208 (240)
99 3b2a_A TON_1937, putative unch 99.0 3.2E-07 1.1E-11 76.6 21.5 181 87-271 34-219 (265)
100 1te4_A Conserved protein MTH18 98.9 3.7E-10 1.3E-14 89.8 2.0 122 355-501 9-130 (131)
101 3l9t_A Putative uncharacterize 98.8 8.6E-08 2.9E-12 81.0 12.4 139 200-349 69-208 (240)
102 1te4_A Conserved protein MTH18 98.8 1.9E-09 6.6E-14 85.6 2.2 120 318-462 11-130 (131)
103 1vsy_5 Proteasome activator BL 98.6 1.5E-06 5.1E-11 91.7 19.6 370 154-528 499-952 (997)
104 1vsy_5 Proteasome activator BL 98.5 9.5E-07 3.3E-11 93.2 15.2 384 84-472 506-973 (997)
105 3u0r_A Apoptosis inhibitor 5; 98.2 0.00024 8.4E-09 66.5 21.1 258 176-445 41-317 (507)
106 3u0r_A Apoptosis inhibitor 5; 98.1 0.00016 5.6E-09 67.6 17.8 256 138-404 41-315 (507)
107 4gmo_A Putative uncharacterize 98.1 0.005 1.7E-07 63.2 30.8 86 46-134 33-128 (684)
108 3grl_A General vesicular trans 98.1 0.0051 1.7E-07 60.6 27.7 322 84-426 19-394 (651)
109 3grl_A General vesicular trans 98.0 0.0046 1.6E-07 60.9 26.2 325 161-505 19-395 (651)
110 3tt9_A Plakophilin-2; cell adh 97.9 0.00021 7.3E-09 61.8 13.7 148 359-506 53-231 (233)
111 3tt9_A Plakophilin-2; cell adh 97.9 0.00041 1.4E-08 60.0 14.6 185 242-426 9-229 (233)
112 4gmo_A Putative uncharacterize 97.7 0.02 6.8E-07 58.8 27.0 86 10-98 35-131 (684)
113 3gs3_A Symplekin, LD45768P; he 97.2 0.057 2E-06 47.1 18.7 129 374-505 31-174 (257)
114 1lsh_A Lipovitellin (LV-1N, LV 97.1 0.036 1.2E-06 59.8 20.1 246 152-430 319-580 (1056)
115 1lsh_A Lipovitellin (LV-1N, LV 96.9 0.027 9.1E-07 60.8 17.8 157 331-508 407-580 (1056)
116 3gs3_A Symplekin, LD45768P; he 96.9 0.18 6E-06 44.1 24.5 69 238-308 50-118 (257)
117 4atg_A TAF6; transcription, TF 96.9 0.043 1.5E-06 45.3 14.8 142 373-525 23-179 (196)
118 3o2t_A Symplekin; heat repeat, 96.8 0.086 2.9E-06 48.9 17.4 129 374-505 41-184 (386)
119 3o2t_A Symplekin; heat repeat, 96.2 0.74 2.5E-05 42.7 28.8 69 238-308 60-128 (386)
120 1upk_A MO25 protein; transfera 94.9 2 6.9E-05 38.6 21.1 106 362-467 168-285 (341)
121 4atg_A TAF6; transcription, TF 94.7 0.71 2.4E-05 38.1 12.5 90 353-446 82-178 (196)
122 3g2s_A C-terminal fragment of 93.6 1.8 6.1E-05 34.0 12.3 84 435-518 47-140 (149)
123 2b6c_A Hypothetical protein EF 93.5 0.93 3.2E-05 38.7 11.6 130 128-270 58-188 (220)
124 3ldz_A STAM-1, signal transduc 93.4 1 3.5E-05 35.1 10.7 98 406-509 18-119 (140)
125 1mhq_A ADP-ribosylation factor 92.8 2.8 9.7E-05 32.9 14.2 117 406-528 14-141 (148)
126 3jxy_A Alkylpurine DNA glycosy 92.2 5.1 0.00017 34.3 16.7 159 128-305 64-223 (232)
127 1juq_A ADP-ribosylation factor 91.7 3.2 0.00011 33.5 11.9 109 407-521 27-145 (171)
128 1x5b_A Signal transducing adap 91.7 2.7 9.4E-05 33.6 11.4 97 407-509 29-130 (163)
129 1upk_A MO25 protein; transfera 90.9 8.7 0.0003 34.6 20.7 207 318-526 77-313 (341)
130 3ldz_A STAM-1, signal transduc 90.9 3.4 0.00012 32.1 10.9 108 172-285 18-129 (140)
131 2b6c_A Hypothetical protein EF 89.9 7.9 0.00027 32.8 13.4 131 361-505 58-189 (220)
132 3jxy_A Alkylpurine DNA glycosy 89.8 7.1 0.00024 33.4 13.1 131 205-349 64-196 (232)
133 3zyq_A Hepatocyte growth facto 88.8 5.7 0.00019 33.8 11.6 97 407-509 22-123 (226)
134 1x5b_A Signal transducing adap 87.9 6.4 0.00022 31.5 10.6 70 165-234 54-128 (163)
135 2fv2_A RCD1 required for cell 87.8 9.2 0.00031 32.9 11.8 128 221-348 75-224 (268)
136 3g2s_A C-terminal fragment of 87.5 8.9 0.0003 30.0 12.6 74 396-469 47-130 (149)
137 2npp_B PP2A, B subunit, serine 86.4 22 0.00077 33.6 20.6 250 251-504 127-399 (449)
138 3zyq_A Hepatocyte growth facto 84.3 12 0.0004 31.9 11.1 98 173-276 22-124 (226)
139 1elk_A Target of MYB1; superhe 84.0 9.3 0.00032 30.3 9.7 61 136-196 65-134 (157)
140 3ut4_A CTHE_2751, putative unc 83.9 12 0.00042 28.4 10.7 94 396-502 30-128 (134)
141 3ut4_A CTHE_2751, putative unc 83.2 12 0.00041 28.5 9.3 100 155-267 23-127 (134)
142 1vdy_A Hypothetical protein (R 82.8 9.8 0.00034 29.3 8.9 101 403-504 17-130 (140)
143 3fga_B Serine/threonine-protei 82.5 31 0.0011 32.1 22.5 253 251-505 94-367 (403)
144 1juq_A ADP-ribosylation factor 81.6 19 0.00065 28.9 12.2 74 396-469 49-132 (171)
145 1elk_A Target of MYB1; superhe 79.9 20 0.0007 28.3 11.9 96 407-508 30-134 (157)
146 1dvp_A HRS, hepatocyte growth 78.7 17 0.00059 30.7 10.2 96 407-508 19-119 (220)
147 2fv2_A RCD1 required for cell 78.0 33 0.0011 29.5 14.7 69 84-152 99-172 (268)
148 1t06_A Hypothetical protein; s 77.3 33 0.0011 29.2 12.2 125 130-271 53-181 (235)
149 1vdy_A Hypothetical protein (R 77.1 11 0.00038 29.0 7.6 36 159-194 45-80 (140)
150 1vsy_4 Proteasome activator BL 76.1 77 0.0026 32.8 26.0 297 160-467 336-689 (799)
151 1ho8_A Vacuolar ATP synthase s 76.0 56 0.0019 31.2 24.4 56 410-465 418-476 (480)
152 1dvp_A HRS, hepatocyte growth 75.9 22 0.00074 30.0 10.0 71 164-234 43-118 (220)
153 2jak_A Serine/threonine-protei 68.6 74 0.0025 29.4 16.5 208 251-460 139-362 (392)
154 1mhq_A ADP-ribosylation factor 68.1 41 0.0014 26.2 14.7 74 396-469 37-120 (148)
155 1vsy_4 Proteasome activator BL 64.5 1.4E+02 0.0047 31.0 23.4 113 199-311 336-457 (799)
156 3dad_A FH1/FH2 domain-containi 63.7 84 0.0029 28.3 17.3 116 353-468 155-289 (339)
157 2npp_B PP2A, B subunit, serine 62.8 1.1E+02 0.0036 29.1 21.2 248 174-425 128-398 (449)
158 3dad_A FH1/FH2 domain-containi 62.3 90 0.0031 28.1 17.2 139 370-508 130-290 (339)
159 3gvo_A Pumilio 2, pumilio homo 61.7 96 0.0033 28.3 13.2 14 202-215 131-144 (351)
160 3s4w_B Protein FACD2, fanconi 51.5 2.1E+02 0.007 31.5 13.6 153 81-234 395-552 (1323)
161 3rru_A TOM1L1 protein; structu 51.5 85 0.0029 24.5 10.7 97 406-508 29-134 (152)
162 1ho8_A Vacuolar ATP synthase s 51.3 1.7E+02 0.0058 27.9 29.6 68 437-504 396-476 (480)
163 3fga_B Serine/threonine-protei 50.2 1.6E+02 0.0055 27.3 21.0 219 164-387 130-366 (403)
164 3bwt_A Protein PUF4; pumilio, 48.8 1.2E+02 0.0042 27.2 10.4 11 440-450 274-284 (333)
165 1w9c_A CRM1 protein, exportin 48.7 1.5E+02 0.0051 26.6 24.0 135 334-468 44-199 (321)
166 3gvo_A Pumilio 2, pumilio homo 46.3 1.7E+02 0.0059 26.5 13.2 7 363-369 208-214 (351)
167 3k49_A MRNA-binding protein PU 41.6 2E+02 0.0067 26.4 10.7 14 145-158 42-55 (369)
168 1t06_A Hypothetical protein; s 41.5 77 0.0026 26.9 7.2 70 164-233 109-182 (235)
169 1sz9_A PCF11 protein; RNA poly 38.1 1.4E+02 0.0047 23.1 9.8 36 200-235 41-76 (144)
170 3rru_A TOM1L1 protein; structu 34.0 1.7E+02 0.0057 22.8 10.9 108 172-285 29-145 (152)
171 1sz9_A PCF11 protein; RNA poly 29.5 1.9E+02 0.0066 22.2 11.9 73 433-505 40-115 (144)
172 2jak_A Serine/threonine-protei 28.3 3.6E+02 0.012 24.9 15.5 209 173-383 139-363 (392)
173 3k49_A MRNA-binding protein PU 21.4 2.5E+02 0.0086 25.6 7.6 16 509-524 330-345 (369)
174 1w9c_A CRM1 protein, exportin 20.9 4.5E+02 0.015 23.5 23.0 97 216-312 92-199 (321)
No 1
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=100.00 E-value=3.3e-58 Score=472.59 Aligned_cols=528 Identities=60% Similarity=0.974 Sum_probs=494.6
Q ss_pred CCCCCcCcHHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhccccccccccCCchHHHHHHHHHHhcccccCCCcc
Q 009632 3 MVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVE 82 (530)
Q Consensus 3 ~~~~~~~~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~~~~~l~~~~~~~~~~~ 82 (530)
.+|+++++|..|+++++++|+..|..|++.++.++..+|++..+++++|.+.+..|+++++|..++.+++.+.+.+++..
T Consensus 4 ~~~~~~~~i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~d~~~~vr~~~~~~L~~~~~~~~~~~ 83 (588)
T 1b3u_A 4 DGDDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTLVGGPE 83 (588)
T ss_dssp CTTTSSHHHHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCCCCHHHHHHHHHHHTTCSGGGTSGG
T ss_pred ccCCCcCcHHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCcHH
Confidence 46889999999999999999999999999999999999999999999999988668899999999999999999888778
Q ss_pred chhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChHHHH
Q 009632 83 HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKT 162 (530)
Q Consensus 83 ~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~~ 162 (530)
+...+++.|..+.+|++..||..|+.+++.++..++++.....++|.+..+.+++++.+|..++.+++.++...++..++
T Consensus 84 ~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~ 163 (588)
T 1b3u_A 84 YVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKA 163 (588)
T ss_dssp GGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHH
T ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHH
Confidence 88999999999999999999999999999999999988888889999999999999999999999999999999988889
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhcc
Q 009632 163 ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHI 242 (530)
Q Consensus 163 ~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 242 (530)
.+++.+..+++|+++.||..++.+++.++...+++...+.++|.+.++++|+++.||..|+++++.++...+++...+.+
T Consensus 164 ~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 243 (588)
T 1b3u_A 164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALV 243 (588)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHT
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999999999999887778889999999999999999999999999999999887777889
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH----HHHh
Q 009632 243 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----LAIQ 318 (530)
Q Consensus 243 ~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~----~~~~ 318 (530)
+|.+..+++|++|.||..++.+++.++...+++.....++|.+.++++|++++||..++.+++.++..++.+ .+.+
T Consensus 244 ~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 323 (588)
T 1b3u_A 244 MPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMS 323 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHH
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHH
Confidence 999999999999999999999999999988876666789999999999999999999999999999988865 5568
Q ss_pred hhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhH
Q 009632 319 HILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL 398 (530)
Q Consensus 319 ~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l 398 (530)
.++|.+..+++|++|.+|..++.+++.++..+|.+...+.++|.+..+++|+++.||..++.+++.++..+|.+...+.+
T Consensus 324 ~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~ 403 (588)
T 1b3u_A 324 QILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSL 403 (588)
T ss_dssp THHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 89999999999999999999999999999999988778889999999999999999999999999999999887777889
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHH
Q 009632 399 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITP 478 (530)
Q Consensus 399 ~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~ 478 (530)
+|.+...+++++|++|..++.+++.++..+|.+++.+.++|.+...+.|+++.||..|+.+++.++..+|+++....++|
T Consensus 404 lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp 483 (588)
T 1b3u_A 404 LPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIP 483 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHH
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 99999999999999999999999999999998888788999999999999999999999999999999998877788999
Q ss_pred HHHhhccCCChHHHHHHHHHHHHHhhhcChHHHHhhHHHHHHhhccCCCCCC
Q 009632 479 QVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRYLNL 530 (530)
Q Consensus 479 ~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~p~l~~~l~D~~~~v 530 (530)
.+..+.+|+++.+|..++.+++.++..+|.+.+.+.++|.+...++|+.++|
T Consensus 484 ~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~V 535 (588)
T 1b3u_A 484 KVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANV 535 (588)
T ss_dssp HHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHH
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchH
Confidence 9999999999999999999999999999988889999999999999998764
No 2
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=100.00 E-value=1.4e-49 Score=408.38 Aligned_cols=488 Identities=19% Similarity=0.257 Sum_probs=436.1
Q ss_pred HHhcChhHHHHHHHhhcHHHHHHhhChHhhhhcccccccc-ccCCchHHHHHHHHHHhcccccCCCccchhcchhHHHhh
Q 009632 16 DELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETL 94 (530)
Q Consensus 16 ~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l 94 (530)
..+.++++..|..|...|+.++..++++...+.++|.+.. ..+++..+|..++..++.++...+ ......++|.+..+
T Consensus 94 ~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~-~~~~~~l~~~l~~l 172 (588)
T 1b3u_A 94 SLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVS-SAVKAELRQYFRNL 172 (588)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSC-HHHHHHHHHHHHHH
T ss_pred HHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHH
Confidence 3346788999999999999999888887777788888877 566788899999999998888766 44567889999999
Q ss_pred hcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChH-HHHHHHHHHHhhcC
Q 009632 95 CTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-LKTELRSIYTQLCQ 173 (530)
Q Consensus 95 ~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~-~~~~l~~~l~~l~~ 173 (530)
++|+++.||..|+.+++.+++..+++.....++|.+..+.+|+++.+|..++..++.+....+++ ..+.++|.+..+++
T Consensus 173 ~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~ 252 (588)
T 1b3u_A 173 CSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAE 252 (588)
T ss_dssp HTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHT
T ss_pred hCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999998887777788999999999999999999999999888777765 56778999999999
Q ss_pred CCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCch----hhhhccHHHHHHh
Q 009632 174 DDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ----DCVAHILPVIVNF 249 (530)
Q Consensus 174 d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~~~~~l~~~ 249 (530)
|++|.||+.++.+++.++...+++.+.+.++|.+.+++.|+++.||..|.++++.++..++++ .+.+.++|.+..+
T Consensus 253 d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~ 332 (588)
T 1b3u_A 253 DKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKEL 332 (588)
T ss_dssp CSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHH
Confidence 999999999999999999988887777889999999999999999999999999999988875 5678899999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhcc
Q 009632 250 SQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS 329 (530)
Q Consensus 250 ~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 329 (530)
++|++|.||..++.+++.++..+|.+...+.++|.+..+++|++++||.+++.+++.++..++.+...+.++|.+..+.+
T Consensus 333 l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~ 412 (588)
T 1b3u_A 333 VSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAE 412 (588)
T ss_dssp HTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHT
T ss_pred hcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999988876656778999999999999999999999999999998887777888999999999
Q ss_pred CCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCC
Q 009632 330 DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR 409 (530)
Q Consensus 330 d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~ 409 (530)
|++|++|..++..++.++..+|.+.+.+.++|.+..+++|+++.||..++.+++.++..+|.++..+.++|.+..+..++
T Consensus 413 d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~ 492 (588)
T 1b3u_A 413 DAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDP 492 (588)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCS
T ss_pred CCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhCC
Confidence 99999999999999999988887766678899999999999999999999999999999998877788999999998999
Q ss_pred ChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhccCCCh
Q 009632 410 HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHY 489 (530)
Q Consensus 410 ~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~ 489 (530)
+|.+|..++.+++.++..+|.+.+...++|.+.+.+.|++++||..++++++.+...+|.....+.++|.+..+.+|+++
T Consensus 493 ~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~p~l~~l~~d~d~ 572 (588)
T 1b3u_A 493 NYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDV 572 (588)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHTTCSSH
T ss_pred CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHcCCCch
Confidence 99999999999999999999888888999999999999999999999999999999888876667899999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 009632 490 LYRMTILRAISLLAP 504 (530)
Q Consensus 490 ~vr~~a~~~l~~i~~ 504 (530)
+||..|..+++.+.+
T Consensus 573 ~vr~~a~~al~~l~~ 587 (588)
T 1b3u_A 573 DVKYFAQEALTVLSL 587 (588)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHhhc
Confidence 999999999987653
No 3
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=7.4e-34 Score=302.96 Aligned_cols=515 Identities=16% Similarity=0.134 Sum_probs=407.8
Q ss_pred HHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhh-------hhcccccccc-ccCCchHHHHHHHHHHhcccccCCC--
Q 009632 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERT-------RKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGG-- 80 (530)
Q Consensus 11 ~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~-------~~~l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~-- 80 (530)
+..|++.+.++++..|..++..|+.+.+..++... .+.++|.+.+ +.++++++|..+..+++.+....+.
T Consensus 130 l~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~ 209 (852)
T 4fdd_A 130 LPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQAL 209 (852)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHH
Confidence 67888999999999999999999999888765421 3456777666 6788999999999999988764332
Q ss_pred ccchhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhh--hhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCC-
Q 009632 81 VEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESD--LVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAP- 157 (530)
Q Consensus 81 ~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~- 157 (530)
..+...+++.+..+.+|+++.||..++.+|..+++..++.. ....+++.+.....++++.+|..++..+..+++...
T Consensus 210 ~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~ 289 (852)
T 4fdd_A 210 MLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPIC 289 (852)
T ss_dssp HTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhH
Confidence 12345677778888889999999999999999998765421 123367777788888888999999999888876432
Q ss_pred ----hHHHHHHHHHHHhhc-----------CC-----------CChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhh
Q 009632 158 ----DILKTELRSIYTQLC-----------QD-----------DMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLT 211 (530)
Q Consensus 158 ----~~~~~~l~~~l~~l~-----------~d-----------~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~ 211 (530)
+.+...++|.+...+ .| .+|.+|+.++.+++.++...++ ...+.++|.+.+.+
T Consensus 290 ~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~-~~~~~l~~~l~~~l 368 (852)
T 4fdd_A 290 KDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD-ELLPHILPLLKELL 368 (852)
T ss_dssp HHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHh
Confidence 124567888887766 44 6789999999999999998874 55678999999999
Q ss_pred cCCchhHHHHHHHHHHHHhhhcCc--hhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC---cccccchHHHHH
Q 009632 212 QDDQDSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYV 286 (530)
Q Consensus 212 ~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~ 286 (530)
.|+++.+|..|+.+++.+++..++ ..+.+.++|.+...++|+++.||..++.+++.++..++. ..+...+++.+.
T Consensus 369 ~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~ 448 (852)
T 4fdd_A 369 FHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELL 448 (852)
T ss_dssp TCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 999999999999999999987764 245677899999999999999999999999999987643 234567889999
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHhhCHH--HHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCH----HHHHHhHH
Q 009632 287 RLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK----DATIEQLL 360 (530)
Q Consensus 287 ~~l~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~----~~~~~~l~ 360 (530)
+.+.|+++.||.+|+.+++.+++..+.. .+.+.+++.+...+++.+......++++++.++...|. ..+.+.++
T Consensus 449 ~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~ 528 (852)
T 4fdd_A 449 KRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLM 528 (852)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHH
Confidence 9999999999999999999999887754 34466777777776666666666777888877755443 45778888
Q ss_pred HHHH---HhhcCCChHHHHHHHHhhHHhhhhhchhHH--HhhHHHHHHHHhc-----------------CCChHHHHHHH
Q 009632 361 PIFL---SLLKDEFPDVRLNIISKLDQVNQVIGIDLL--SQSLLPAIVELAE-----------------DRHWRVRLAII 418 (530)
Q Consensus 361 ~~l~---~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~l~~~l~~~~~-----------------~~~~~~R~~~~ 418 (530)
|.+. ..+.|+++.+| .++++++.++..+|.... .+.+++.+.+.+. .++...|..++
T Consensus 529 p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l 607 (852)
T 4fdd_A 529 PPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVAL 607 (852)
T ss_dssp HHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHH
T ss_pred HHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHH
Confidence 8888 45678878886 789999999998886421 2344443333321 23567899999
Q ss_pred HHHHHHHhhhChhhHH----HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHh--hhhHHHHHhhccCCChHHH
Q 009632 419 EYIPLLASQLGVGFFD----DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM--QHITPQVLEMINNPHYLYR 492 (530)
Q Consensus 419 ~~l~~l~~~~~~~~~~----~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~--~~i~~~l~~~~~d~~~~vr 492 (530)
..++.+++.+|.++.. ..+++.+..++.|+.+.||..+..+++.++..++..+.. ..++|.+.+.++++++.+|
T Consensus 608 ~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~ 687 (852)
T 4fdd_A 608 DLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVC 687 (852)
T ss_dssp HHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHH
T ss_pred HHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchHHH
Confidence 9999999999865422 457999999999999999999999999999988865433 6689999999988899999
Q ss_pred HHHHHHHHHHhhhcCh--HHHHhhHHHHHHhhccCCC
Q 009632 493 MTILRAISLLAPVMGS--EITCSRLLPVVINASKDRY 527 (530)
Q Consensus 493 ~~a~~~l~~i~~~~~~--~~~~~~~~p~l~~~l~D~~ 527 (530)
..|++++|.++..+|. ..+...+++.+...++++.
T Consensus 688 ~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~ 724 (852)
T 4fdd_A 688 NNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPN 724 (852)
T ss_dssp HHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCC
Confidence 9999999999998875 4567788888888887753
No 4
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=9.4e-34 Score=313.68 Aligned_cols=509 Identities=13% Similarity=0.164 Sum_probs=397.9
Q ss_pred HHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhcccccccc-ccCCchHHHHHHHHHHhcccccCCCc--------
Q 009632 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGV-------- 81 (530)
Q Consensus 11 ~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~~-------- 81 (530)
+..+++.+.++++..|..|+..|+.++..+++ ...+.+++.+.. +.|+++.+|..++.+++.++..++..
T Consensus 50 l~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~ 128 (1230)
T 1u6g_C 50 VKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAA 128 (1230)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHH
Confidence 56788999999999999999999999988765 455677787777 77888999999999999998877643
Q ss_pred cchhcchhHHHhhhc-ccchHHHHHHHHHHHHHHhhcChhh--hhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCCh
Q 009632 82 EHAHVLLPPLETLCT-VEETCVRDKAVESLCRIGSQMRESD--LVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD 158 (530)
Q Consensus 82 ~~~~~l~~~l~~l~~-d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~ 158 (530)
.+++.++|.+...+. ++++.+|..|+.++..++...++.. ....+++.+.....+++..+|..++.+++.++...++
T Consensus 129 ~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~ 208 (1230)
T 1u6g_C 129 NVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN 208 (1230)
T ss_dssp HHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH
Confidence 267889999988887 4789999999999999997655421 2244666666677788889999999999999988876
Q ss_pred HHHHHHHHHHHhhcC-CCChhHHHHHHHHHHHHHhhhcch--hhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc
Q 009632 159 ILKTELRSIYTQLCQ-DDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP 235 (530)
Q Consensus 159 ~~~~~l~~~l~~l~~-d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~ 235 (530)
...+.+++.+...+. +.++.+|..++++++.++...++. .+.+.++|.+.+.+.|+++.+|..++++++.++..+++
T Consensus 209 ~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~ 288 (1230)
T 1u6g_C 209 IVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPK 288 (1230)
T ss_dssp --CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChH
Confidence 655555665555443 334689999999999999887762 34567999999999999999999999999999998876
Q ss_pred h--hhhhccHHHHHHhcC-------------------------------------CCCHHHHHHHHHHHHHHHHHhCC--
Q 009632 236 Q--DCVAHILPVIVNFSQ-------------------------------------DKSWRVRYMVANQLYELCEAVGP-- 274 (530)
Q Consensus 236 ~--~~~~~~~~~l~~~~~-------------------------------------d~~~~vr~~~~~~l~~l~~~~~~-- 274 (530)
+ .+.+.++|.+...+. |..|.+|.+++.++..++...++
T Consensus 289 ~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~ 368 (1230)
T 1u6g_C 289 EVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEML 368 (1230)
T ss_dssp CCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHH
Confidence 3 355666666654332 23588999999999999986554
Q ss_pred cccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH---------------------HHHHhhhhHhHhHhccCCcH
Q 009632 275 EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP---------------------ELAIQHILPCVKELSSDSSQ 333 (530)
Q Consensus 275 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---------------------~~~~~~l~~~l~~~~~d~~~ 333 (530)
..+.+.++|.+...+.|.+++||..++.++..++...+. ..+.+.++|.+.+.++|++|
T Consensus 369 ~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~ 448 (1230)
T 1u6g_C 369 PEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSV 448 (1230)
T ss_dssp HHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCH
Confidence 234567889999999999999999999999999886642 23456677777777899999
Q ss_pred HHHHHHHHHHHhhccccCH--HHHHHhHHHHHHHhhcCCCh--HHHHHHHHhhHHhhhhhchhH---HHhhHHHHHHHHh
Q 009632 334 HVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEFP--DVRLNIISKLDQVNQVIGIDL---LSQSLLPAIVELA 406 (530)
Q Consensus 334 ~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~--~vr~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~~~ 406 (530)
++|..++..++.++..++. ..+.+.++|.+...|+|..+ .+|..++..+..+....|++. +.+.++|.+...+
T Consensus 449 ~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l 528 (1230)
T 1u6g_C 449 KTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACV 528 (1230)
T ss_dssp HHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHH
Confidence 9999999999988776542 24578899999999999875 899999999999988777653 4468999999999
Q ss_pred cCCChHHHHHHHHHHHHHHhhhCh---------hhHHHHHHHHHHHHh--cCCcHHHHHHHHHHHHHHHHHhChhHHh--
Q 009632 407 EDRHWRVRLAIIEYIPLLASQLGV---------GFFDDKLGALCMQWL--QDKVYSIRDAAANNLKRLAEEFGPEWAM-- 473 (530)
Q Consensus 407 ~~~~~~~R~~~~~~l~~l~~~~~~---------~~~~~~~~~~l~~~l--~d~~~~Vr~~a~~~l~~l~~~~~~~~~~-- 473 (530)
+|++|++|..++.+++.+++.+|. ..+.+.++|.++..+ .|.+..||..|+.++|.++...|..+..
T Consensus 529 ~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~ 608 (1230)
T 1u6g_C 529 GDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDL 608 (1230)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHH
T ss_pred cccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhH
Confidence 999999999999999999988876 235678999999998 7889999999999999999987754321
Q ss_pred ----------------------------------------hhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcChHHHHh
Q 009632 474 ----------------------------------------QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCS 513 (530)
Q Consensus 474 ----------------------------------------~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~~~~~~ 513 (530)
..++|.+...+.+++..+|.+++.+++.++...+.....+
T Consensus 609 ~~~l~~L~~~l~~e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~~~ 688 (1230)
T 1u6g_C 609 PNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAA 688 (1230)
T ss_dssp HHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHH
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccCCHH
Confidence 2234444445556677888888888888887776433334
Q ss_pred hHHHHHH
Q 009632 514 RLLPVVI 520 (530)
Q Consensus 514 ~~~p~l~ 520 (530)
++.|.+.
T Consensus 689 ~v~~~l~ 695 (1230)
T 1u6g_C 689 MIDAVLD 695 (1230)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 4444443
No 5
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=3.9e-33 Score=297.41 Aligned_cols=478 Identities=17% Similarity=0.148 Sum_probs=380.3
Q ss_pred ccccccc-ccCCchHHHHHHHHHHhcccccCCCccchhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhh-----
Q 009632 49 LIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDL----- 122 (530)
Q Consensus 49 l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~----- 122 (530)
+.+.+.+ +.++++.+|..++.+++.+++.-+ +..++.+++.+...++++++.+|+.++.+++.+++..++...
T Consensus 91 ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~-~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~ 169 (852)
T 4fdd_A 91 IKSECLNNIGDSSPLIRATVGILITTIASKGE-LQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLD 169 (852)
T ss_dssp HHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTT-TTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhc
Confidence 3333333 567888999999999999987643 567889999999999999999999999999999998876422
Q ss_pred --hhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChH---HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc-
Q 009632 123 --VDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP- 196 (530)
Q Consensus 123 --~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~---~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~- 196 (530)
...++|.+..+.+++++.+|..+..+++.+....+.. ....+++.+..++.|+++.||+.++.+|+.+++..++
T Consensus 170 ~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~ 249 (852)
T 4fdd_A 170 RPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDR 249 (852)
T ss_dssp SCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHH
T ss_pred chHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHH
Confidence 3447777777888889999999999998887765543 3567889999999999999999999999999987654
Q ss_pred -hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc----hhhhhccHHHHHHhc-----------CC--------
Q 009632 197 -AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP----QDCVAHILPVIVNFS-----------QD-------- 252 (530)
Q Consensus 197 -~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~~~~~l~~~~-----------~d-------- 252 (530)
..+.+.+++.+.+.+.|.++.||..|++.+..+++.-.. ..+...++|.+...+ .|
T Consensus 250 ~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~d 329 (852)
T 4fdd_A 250 LLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGD 329 (852)
T ss_dssp HGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccc
Confidence 234567899999999999999999999999998864211 223456777776665 34
Q ss_pred ---CCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH--HHHhhhhHhHhHh
Q 009632 253 ---KSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKEL 327 (530)
Q Consensus 253 ---~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~ 327 (530)
.+|.+|.+++.+++.++...|+. ....++|.+.+.+.+++|.+|.+|+.+++.+++..+.. .+.+.++|.+...
T Consensus 330 d~~~~~~vr~~a~~~L~~la~~~~~~-~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~ 408 (852)
T 4fdd_A 330 DTISDWNLRKCSAAALDVLANVYRDE-LLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQC 408 (852)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 56889999999999999998854 45678999999999999999999999999998866532 3457788889999
Q ss_pred ccCCcHHHHHHHHHHHHhhccccCH---HHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh--HHHhhHHHHH
Q 009632 328 SSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAI 402 (530)
Q Consensus 328 ~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l 402 (530)
++|+++.||..++.+++.++..++. ..+...+++.+...++|+++.||..++.+++.+++..+.. .+.+.+++.+
T Consensus 409 l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L 488 (852)
T 4fdd_A 409 LSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTL 488 (852)
T ss_dssp TTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHH
Confidence 9999999999999999999876543 3456788999999999999999999999999999887754 2346788888
Q ss_pred HHHhcCCChHHHHHHHHHHHHHHhhhChhh----HHHHHHHHHH---HHhcCCcHHHHHHHHHHHHHHHHHhChhHH--h
Q 009632 403 VELAEDRHWRVRLAIIEYIPLLASQLGVGF----FDDKLGALCM---QWLQDKVYSIRDAAANNLKRLAEEFGPEWA--M 473 (530)
Q Consensus 403 ~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~----~~~~~~~~l~---~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~--~ 473 (530)
...+++.+......++.+++.++...|... +.+.++|.+. ..+.|..+.+| .++++++.++..+|..+. .
T Consensus 489 ~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~ 567 (852)
T 4fdd_A 489 VFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYC 567 (852)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHHH
Confidence 888877777777788899999988777543 6677888887 45677778886 899999999999987543 2
Q ss_pred hhhHHHHHhhc-----------------cCCChHHHHHHHHHHHHHhhhcChHH--H--HhhHHHHHHhhccCCCCC
Q 009632 474 QHITPQVLEMI-----------------NNPHYLYRMTILRAISLLAPVMGSEI--T--CSRLLPVVINASKDRYLN 529 (530)
Q Consensus 474 ~~i~~~l~~~~-----------------~d~~~~vr~~a~~~l~~i~~~~~~~~--~--~~~~~p~l~~~l~D~~~~ 529 (530)
..+++.+.+.+ ..++.++|..++.+++.++..+|.+. + .+.++|.+..++.|+.+.
T Consensus 568 ~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~ 644 (852)
T 4fdd_A 568 EPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPE 644 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChh
Confidence 33444333322 12467899999999999999998543 2 267899999999998654
No 6
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=3.3e-32 Score=291.83 Aligned_cols=513 Identities=15% Similarity=0.177 Sum_probs=408.6
Q ss_pred HHHHHHHhcCh-hHHHHHHHhhcHHHHHHhhChH-----hhhhcccccccc-ccCC--chHHHHHHHHHHhcccccCCCc
Q 009632 11 IAVLIDELKND-DIQLRLNSIRRLSTIARALGEE-----RTRKELIPFLSE-NNDD--DDEVLLAMAEELGVFIPYVGGV 81 (530)
Q Consensus 11 ~~~l~~~l~~~-~~~~R~~a~~~l~~~~~~~~~~-----~~~~~l~~~l~~-~~d~--~~~vr~~~~~~l~~~~~~~~~~ 81 (530)
+..|++.+.++ ++..|..++..+..+.+.++++ ...+.+++.+.. +.++ +++||..+.++++.+...++..
T Consensus 136 l~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~ 215 (861)
T 2bpt_A 136 MKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNN 215 (861)
T ss_dssp HHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888 9999999999999998877643 234456666665 5565 7899999999999876654421
Q ss_pred ----cchhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChh---hhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcC
Q 009632 82 ----EHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES---DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYP 154 (530)
Q Consensus 82 ----~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~ 154 (530)
..+..+++.+...++++++.+|..+++++..++...++. .+...+.+.+.....+.++.+|..++.++..++.
T Consensus 216 ~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~ 295 (861)
T 2bpt_A 216 MEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICE 295 (861)
T ss_dssp HTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred ccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 123567888888888999999999999999999876542 1221566667777788888999999988877654
Q ss_pred CC--------------------ChHHHHHHHHHHHhhcC-------CCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHH
Q 009632 155 SA--------------------PDILKTELRSIYTQLCQ-------DDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIF 207 (530)
Q Consensus 155 ~~--------------------~~~~~~~l~~~l~~l~~-------d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l 207 (530)
.. .......++|.+...+. |.+|.+|..+..+++.++..+++ ...+.+++.+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~-~~~~~l~~~l 374 (861)
T 2bpt_A 296 EEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN-HILEPVLEFV 374 (861)
T ss_dssp HHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG-GGHHHHHHHH
T ss_pred HHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccH-hHHHHHHHHH
Confidence 32 11244678888877665 34689999999999999998874 4567899999
Q ss_pred HHhhcCCchhHHHHHHHHHHHHhhhcCch---hhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCc----ccccc
Q 009632 208 EDLTQDDQDSVRLLAVEGCAALGKLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE----PTRMD 280 (530)
Q Consensus 208 ~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~----~~~~~ 280 (530)
.+.+.++++.+|..|+.+++.++...+++ .+.+.++|.+...++|+++.||..++.+++.++..++.+ .+...
T Consensus 375 ~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ 454 (861)
T 2bpt_A 375 EQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPG 454 (861)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHH
T ss_pred HHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHH
Confidence 99999999999999999999999877632 345668888899999999999999999999999987642 34567
Q ss_pred hHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH---H---HHHhhhhHhHhHhcc--CCcHHHHHHHHHHHHhhccccCH
Q 009632 281 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP---E---LAIQHILPCVKELSS--DSSQHVRSALASVIMGMAPLLGK 352 (530)
Q Consensus 281 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~---~~~~~l~~~l~~~~~--d~~~~vr~~~~~~l~~l~~~~~~ 352 (530)
++|.+.+.+.|+ +.||..++.++..+++.++. . .+.+.+++.+...+. |.++.+|..++++++.++...+.
T Consensus 455 ~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~ 533 (861)
T 2bpt_A 455 VVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATD 533 (861)
T ss_dssp HHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCG
T ss_pred HHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcch
Confidence 899999999887 99999999999999988761 1 344666777777766 45589999999999999888775
Q ss_pred H--HHHHhHHHHHHHhhcC---------------CChHHHHHHHHhhHHhhhhhchh--HHHhhHHHHHHHHhcCCCh-H
Q 009632 353 D--ATIEQLLPIFLSLLKD---------------EFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDRHW-R 412 (530)
Q Consensus 353 ~--~~~~~l~~~l~~~l~d---------------~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~~~~~-~ 412 (530)
+ .+...++|.+...+.+ ....+|..++.+++.++..+|.+ .+.+.+++.+...+++.++ .
T Consensus 534 ~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 613 (861)
T 2bpt_A 534 TVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAF 613 (861)
T ss_dssp GGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCc
Confidence 3 3456777777777653 24568899999999999988864 2346788888888888877 8
Q ss_pred HHHHHHHHHHHHHhhhChhh--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHH--hhhhHHHHHhhccCCC
Q 009632 413 VRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA--MQHITPQVLEMINNPH 488 (530)
Q Consensus 413 ~R~~~~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~--~~~i~~~l~~~~~d~~ 488 (530)
+|..++.+++.++...|..+ +...++|.+...++++.+.+|..++.+++.++...|..+. ...+++.+.+.+.+++
T Consensus 614 v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~ 693 (861)
T 2bpt_A 614 IEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPN 693 (861)
T ss_dssp THHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCcc
Confidence 99999999999999888765 4577999999999999999999999999999999886532 3677888888888765
Q ss_pred --hHHHHHHHHHHHHHhhhcChH--HHHhhHHHHHHhhccC
Q 009632 489 --YLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKD 525 (530)
Q Consensus 489 --~~vr~~a~~~l~~i~~~~~~~--~~~~~~~p~l~~~l~D 525 (530)
..+|..++.+++.++...|.. .+.+.++|.+...+..
T Consensus 694 ~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~ 734 (861)
T 2bpt_A 694 ARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNT 734 (861)
T ss_dssp CCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTC
T ss_pred ccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhc
Confidence 889999999999999988764 3578888888887663
No 7
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=8.4e-33 Score=306.07 Aligned_cols=515 Identities=12% Similarity=0.153 Sum_probs=407.5
Q ss_pred CcHHHHHHHhcChhHHHHHHHhhcHHHHHHhhC---hHhhhhcccccccc-ccCCchHHHHHHHHHHhcccccCCCccch
Q 009632 9 YPIAVLIDELKNDDIQLRLNSIRRLSTIARALG---EERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHA 84 (530)
Q Consensus 9 ~~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~---~~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~~~~~ 84 (530)
+.+..+++++.++|+..|..|...|.+....-. .+...+.+++.+.+ +.|+++++|.+++.+++.++..++ +.+.
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~-~~~~ 84 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVK-EYQV 84 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSC-HHHH
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCC-HHHH
Confidence 568899999999999999999988876532210 11223456666666 678899999999999999988766 4567
Q ss_pred hcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChh--------hhhhhHHHHHHHHhcC-CccchhHHHHhHhhhhcCC
Q 009632 85 HVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES--------DLVDWYIPLVKRLAAG-EWFTARVSACGLFHIAYPS 155 (530)
Q Consensus 85 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~--------~~~~~l~~~l~~l~~~-~~~~~r~~~~~~l~~l~~~ 155 (530)
..+++.+...+.|+++.+|..|+.+++.++..+++. .....++|.+.....+ +++.+|..+...++.+...
T Consensus 85 ~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~ 164 (1230)
T 1u6g_C 85 ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSR 164 (1230)
T ss_dssp HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence 788888888888899999999999999999988765 2466788888888884 7788999999999888754
Q ss_pred CCh---HHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCC-chhHHHHHHHHHHHHhh
Q 009632 156 APD---ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDD-QDSVRLLAVEGCAALGK 231 (530)
Q Consensus 156 ~~~---~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~-~~~vr~~a~~~l~~l~~ 231 (530)
.++ .+.+.+++.+...+.|+++.||..++.+++.++...+++. .+.+++.+.+.+.+. ++.+|..++++++.++.
T Consensus 165 ~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~ 243 (1230)
T 1u6g_C 165 QGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISR 243 (1230)
T ss_dssp TCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHH
Confidence 333 3678899999999999999999999999999998876644 345666666655543 35788899999999998
Q ss_pred hcCc--hhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcc--cccchHHHHHHhcCC----------------
Q 009632 232 LLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRD---------------- 291 (530)
Q Consensus 232 ~~~~--~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d---------------- 291 (530)
..|+ ..+.+.++|.+...++|.++.+|..++.+++.++..++.+. +.+.++|.+++.+.+
T Consensus 244 ~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~ 323 (1230)
T 1u6g_C 244 QAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAM 323 (1230)
T ss_dssp HSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC---------------
T ss_pred HhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccc
Confidence 8776 23467799999999999999999999999999999887653 456677777766531
Q ss_pred ---------------------CcHHHHHHHHHHHHHHHHhhCH--HHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhcc
Q 009632 292 ---------------------NEAEVRIAAAGKVTKFCRILNP--ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAP 348 (530)
Q Consensus 292 ---------------------~~~~vr~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~ 348 (530)
..|.||.+|+.++..++...+. ..+.+.++|.+.....|+++.+|..++.++..+..
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~ 403 (1230)
T 1u6g_C 324 DADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLK 403 (1230)
T ss_dssp ---------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHH
T ss_pred cccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence 1257899999999999986664 45667888888888889999999999998887765
Q ss_pred ccCH---------------------HHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch--hHHHhhHHHHHHHH
Q 009632 349 LLGK---------------------DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVEL 405 (530)
Q Consensus 349 ~~~~---------------------~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~ 405 (530)
..+. ..+.+.++|.+...++|+++.+|..++..++.++...+. ....+.++|.+.+.
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~ 483 (1230)
T 1u6g_C 404 QTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFS 483 (1230)
T ss_dssp HHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHH
T ss_pred HhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHH
Confidence 4431 234566778888889999999999999999999887542 12347889999999
Q ss_pred hcCCCh--HHHHHHHHHHHHHHhhhChhh---HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCh-------h--H
Q 009632 406 AEDRHW--RVRLAIIEYIPLLASQLGVGF---FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP-------E--W 471 (530)
Q Consensus 406 ~~~~~~--~~R~~~~~~l~~l~~~~~~~~---~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~-------~--~ 471 (530)
+.++++ .+|..++..+..+....+.+. +...++|.+...+.|+.+.||..++.+++.+++.+|+ . .
T Consensus 484 L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~ 563 (1230)
T 1u6g_C 484 LNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATP 563 (1230)
T ss_dssp TTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHH
T ss_pred HcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHH
Confidence 999876 899999999999988777764 3456899999999999999999999999999998876 1 2
Q ss_pred HhhhhHHHHHhhc--cCCChHHHHHHHHHHHHHhhhcChHH--HHhhHHHHHHhhccC
Q 009632 472 AMQHITPQVLEMI--NNPHYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKD 525 (530)
Q Consensus 472 ~~~~i~~~l~~~~--~d~~~~vr~~a~~~l~~i~~~~~~~~--~~~~~~p~l~~~l~D 525 (530)
+.+.++|.+...+ .|++..+|..++++++.++...|... ..+.++|.+...+.+
T Consensus 564 ~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~ 621 (1230)
T 1u6g_C 564 YIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKN 621 (1230)
T ss_dssp HHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhcc
Confidence 3467899988888 78899999999999999999887542 346666666665544
No 8
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=9.4e-32 Score=288.34 Aligned_cols=514 Identities=12% Similarity=0.106 Sum_probs=409.6
Q ss_pred HHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhcccccccc-ccCC-chHHHHHHHHHHhcccccCCCc-----cch
Q 009632 12 AVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDD-DDEVLLAMAEELGVFIPYVGGV-----EHA 84 (530)
Q Consensus 12 ~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~-~~~vr~~~~~~l~~~~~~~~~~-----~~~ 84 (530)
..+++.+.++++..|..+...++.++....|...|++++|.+.+ +.++ ++.+|..+..+++.+.+.++.. .+.
T Consensus 98 ~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ 177 (861)
T 2bpt_A 98 TNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSS 177 (861)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGH
T ss_pred HHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHH
Confidence 36778899999999999999999999887676678899999988 6666 8899999999998887755432 356
Q ss_pred hcchhHHHhhhccc--chHHHHHHHHHHHHHHhhcChh----hhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCCh
Q 009632 85 HVLLPPLETLCTVE--ETCVRDKAVESLCRIGSQMRES----DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD 158 (530)
Q Consensus 85 ~~l~~~l~~l~~d~--~~~vR~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~ 158 (530)
..+++.+...+.|+ +..||..+++++..++..+... .....+++.+.....++++.+|..++.++..+....++
T Consensus 178 ~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~ 257 (861)
T 2bpt_A 178 NNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYT 257 (861)
T ss_dssp HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 67788888888887 8999999999999986654322 12355788888888888999999999999887765443
Q ss_pred ---HHHH-HHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc-------------------hhhHHHHHHHHHHhhcC--
Q 009632 159 ---ILKT-ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP-------------------AHLKTDIMSIFEDLTQD-- 213 (530)
Q Consensus 159 ---~~~~-~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~-------------------~~~~~~l~~~l~~~~~d-- 213 (530)
.+.. .+++.+...+.|.+..+|..+++.+..++..... ......++|.+...+.+
T Consensus 258 ~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~ 337 (861)
T 2bpt_A 258 FMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQN 337 (861)
T ss_dssp GCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2444 7888888899999999999999999998876421 12336688888877763
Q ss_pred -----CchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCc---ccccchHHHH
Q 009632 214 -----DQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE---PTRMDLVPAY 285 (530)
Q Consensus 214 -----~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l 285 (530)
+++.+|..+..++..++..+++ ...+.++|.+.+.+++.+|++|.+++.+++.++...+++ ...+.++|.+
T Consensus 338 ~d~~d~~~~~r~~a~~~L~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l 416 (861)
T 2bpt_A 338 EDPEDDDWNVSMSAGACLQLFAQNCGN-HILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSI 416 (861)
T ss_dssp CC-CCCCCHHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHH
T ss_pred cccccccCcHHHHHHHHHHHHHHHccH-hHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 3457999999999999998884 456778999999999999999999999999998654422 1245688999
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHhhCH----HHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccC------HHHH
Q 009632 286 VRLLRDNEAEVRIAAAGKVTKFCRILNP----ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG------KDAT 355 (530)
Q Consensus 286 ~~~l~d~~~~vr~~a~~~l~~~~~~~~~----~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~------~~~~ 355 (530)
.+.+.|+++.||..++.+++.++..++. ..+.+.++|.+...+.|. +++|..++.++..++..++ -..+
T Consensus 417 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~ 495 (861)
T 2bpt_A 417 LNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNF 495 (861)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGG
T ss_pred HHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHH
Confidence 9999999999999999999999988764 345577888888877776 9999999999998887654 1245
Q ss_pred HHhHHHHHHHhhcC--CChHHHHHHHHhhHHhhhhhchhH--HHhhHHHHHHHHhcC---------------CChHHHHH
Q 009632 356 IEQLLPIFLSLLKD--EFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAED---------------RHWRVRLA 416 (530)
Q Consensus 356 ~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~~~~---------------~~~~~R~~ 416 (530)
.+.+++.+...+++ .++.+|..++.+++.++...+.+. +.+.++|.+.+.+.+ ....+|..
T Consensus 496 ~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~ 575 (861)
T 2bpt_A 496 YPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSN 575 (861)
T ss_dssp HHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHH
Confidence 67888889999974 448899999999999998877542 234566666555432 24568899
Q ss_pred HHHHHHHHHhhhChhh--HHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHhChhHH--hhhhHHHHHhhccCCChHH
Q 009632 417 IIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKVY-SIRDAAANNLKRLAEEFGPEWA--MQHITPQVLEMINNPHYLY 491 (530)
Q Consensus 417 ~~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~d~~~-~Vr~~a~~~l~~l~~~~~~~~~--~~~i~~~l~~~~~d~~~~v 491 (530)
++.+++.++..+|... +...++|.+...+.+... .||..++.+++.++...|..+. ...++|.+.+.++++++.+
T Consensus 576 ~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~v 655 (861)
T 2bpt_A 576 ILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPV 655 (861)
T ss_dssp HHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHH
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHH
Confidence 9999999999888753 467899999999988777 8999999999999999887643 3678999999999999999
Q ss_pred HHHHHHHHHHHhhhcChH--HHHhhHHHHHHhhccCCC
Q 009632 492 RMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRY 527 (530)
Q Consensus 492 r~~a~~~l~~i~~~~~~~--~~~~~~~p~l~~~l~D~~ 527 (530)
|..++.+++.++..+|.. .+.+.++|.+...+.|+.
T Consensus 656 r~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~ 693 (861)
T 2bpt_A 656 SITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPN 693 (861)
T ss_dssp HHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCcc
Confidence 999999999999988753 356778888888887753
No 9
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=4.3e-30 Score=275.96 Aligned_cols=514 Identities=15% Similarity=0.172 Sum_probs=398.8
Q ss_pred HHHHHHHhcCh--hHHHHHHHhhcHHHHHHhhChHh---hhhcccccccc-ccCC--chHHHHHHHHHHhcccccCCCc-
Q 009632 11 IAVLIDELKND--DIQLRLNSIRRLSTIARALGEER---TRKELIPFLSE-NNDD--DDEVLLAMAEELGVFIPYVGGV- 81 (530)
Q Consensus 11 ~~~l~~~l~~~--~~~~R~~a~~~l~~~~~~~~~~~---~~~~l~~~l~~-~~d~--~~~vr~~~~~~l~~~~~~~~~~- 81 (530)
+..+++.+.++ ++..|..++..++.+.+.++++. ..+.+++.+.. +.++ ++.+|..+..+++.++..++..
T Consensus 130 l~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~ 209 (876)
T 1qgr_A 130 IPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANF 209 (876)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778888888 99999999999999988765432 23455666665 5554 6899999999999887755421
Q ss_pred ---cchhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChh---hhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCC
Q 009632 82 ---EHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES---DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPS 155 (530)
Q Consensus 82 ---~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~ 155 (530)
.....+++.+...+++++..+|..+++++..++...++. .+...+++.+.....++++.+|..++..+..+...
T Consensus 210 ~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~ 289 (876)
T 1qgr_A 210 DKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDE 289 (876)
T ss_dssp TSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 112347777888888889999999999999999876542 22225677777777788888999888777665432
Q ss_pred C----------------------C--hHHHHHHHHHHHhhcC-------CCChhHHHHHHHHHHHHHhhhcchhhHHHHH
Q 009632 156 A----------------------P--DILKTELRSIYTQLCQ-------DDMPMVRRSAASNLGKFAATVEPAHLKTDIM 204 (530)
Q Consensus 156 ~----------------------~--~~~~~~l~~~l~~l~~-------d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~ 204 (530)
. . ....+.+++.+...+. |.+|.+|+++..+++.++...++ ...+.++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~~l 368 (876)
T 1qgr_A 290 EMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-DIVPHVL 368 (876)
T ss_dssp HHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG-GGHHHHH
T ss_pred HHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH-hhHHHHH
Confidence 1 0 1134667777777663 46799999999999999998874 4567899
Q ss_pred HHHHHhhcCCchhHHHHHHHHHHHHhhhcCch---hhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCc----cc
Q 009632 205 SIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE----PT 277 (530)
Q Consensus 205 ~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~----~~ 277 (530)
|.+.+.+.|+++.+|..|+.+++.++...+++ .+.+.++|.+...++|+++.||..++.+++.++..++.. .+
T Consensus 369 ~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 448 (876)
T 1qgr_A 369 PFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY 448 (876)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT
T ss_pred HHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHH
Confidence 99999999999999999999999999887742 355678999999999999999999999999999987642 34
Q ss_pred ccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC----------------HHHHHhhhhHhHhHhccCC---cHHHHHH
Q 009632 278 RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN----------------PELAIQHILPCVKELSSDS---SQHVRSA 338 (530)
Q Consensus 278 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~----------------~~~~~~~l~~~l~~~~~d~---~~~vr~~ 338 (530)
...+++.+...+.|+ +.||..++.++..++...+ ...+.+.++|.+...+.+. ++.+|..
T Consensus 449 l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~ 527 (876)
T 1qgr_A 449 LAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSS 527 (876)
T ss_dssp HHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHH
T ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHH
Confidence 567889999999886 8999999999999998754 1234567788887776653 4689999
Q ss_pred HHHHHHhhccccCH--HHHHHhHHHHHHHhhcC-----------CC----hHHHHHHHHhhHHhhhhhc-hh--HHHhhH
Q 009632 339 LASVIMGMAPLLGK--DATIEQLLPIFLSLLKD-----------EF----PDVRLNIISKLDQVNQVIG-ID--LLSQSL 398 (530)
Q Consensus 339 ~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d-----------~~----~~vr~~a~~~l~~l~~~~~-~~--~~~~~l 398 (530)
++++++.++...|. ..+...++|.+...+.+ .+ +.+|..++.+++.++..+| .+ .+.+.+
T Consensus 528 ~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l 607 (876)
T 1qgr_A 528 AYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVV 607 (876)
T ss_dssp HHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHH
T ss_pred HHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHH
Confidence 99999999887774 23456677777766542 22 5678999999999998888 33 234678
Q ss_pred HHHHHHHhcCCC--hHHHHHHHHHHHHHHhhhChhh--HHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhChhHH-
Q 009632 399 LPAIVELAEDRH--WRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDK-VYSIRDAAANNLKRLAEEFGPEWA- 472 (530)
Q Consensus 399 ~~~l~~~~~~~~--~~~R~~~~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~~~- 472 (530)
+|.+...+++.+ +.+|..++.+++.++...|..+ +...++|.+...+.+. .+.||..++.+++.++...|..+.
T Consensus 608 ~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 687 (876)
T 1qgr_A 608 MASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIP 687 (876)
T ss_dssp HHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHH
T ss_pred HHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 888888888764 6899999999999999887654 4577899999999987 899999999999999999886543
Q ss_pred -hhhhHHHHHhhccC--CChHHHHHHHHHHHHHhhhcChHH--HHhhHHHHHHhhccCC
Q 009632 473 -MQHITPQVLEMINN--PHYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKDR 526 (530)
Q Consensus 473 -~~~i~~~l~~~~~d--~~~~vr~~a~~~l~~i~~~~~~~~--~~~~~~p~l~~~l~D~ 526 (530)
...+++.+.+.+++ .+..+|..++.+++.++...|.++ +.+.++|.+.+.+.++
T Consensus 688 ~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~ 746 (876)
T 1qgr_A 688 FCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQ 746 (876)
T ss_dssp HHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhcc
Confidence 36788888888876 467899999999999999888653 5778888888877654
No 10
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=2e-29 Score=270.88 Aligned_cols=516 Identities=13% Similarity=0.131 Sum_probs=376.2
Q ss_pred HHHHHHhcCh--hHHHHHHHhhcHHHHHHhhChHh----hhhcccccccc-ccCCchHHHHHHHHHHhcccccCCC--cc
Q 009632 12 AVLIDELKND--DIQLRLNSIRRLSTIARALGEER----TRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGG--VE 82 (530)
Q Consensus 12 ~~l~~~l~~~--~~~~R~~a~~~l~~~~~~~~~~~----~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~--~~ 82 (530)
..+.+.+.++ ++..|..|++.+..++..+++.. ..+.+++.+.. +.++++++|..+..+++.++...+. ..
T Consensus 175 ~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 254 (876)
T 1qgr_A 175 TAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMET 254 (876)
T ss_dssp HHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHH
T ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3456667776 68899999999998765543221 11245666666 6677889999999999888764432 12
Q ss_pred chh-cchhHHHhhhcccchHHHHHHHHHHHHHHhhcCh--------------------hh---hhhhHHHHHHHHhc---
Q 009632 83 HAH-VLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE--------------------SD---LVDWYIPLVKRLAA--- 135 (530)
Q Consensus 83 ~~~-~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~--------------------~~---~~~~l~~~l~~l~~--- 135 (530)
+.. .+++.+.....+.++.+|..+++.+..+++.... .. ....++|.+...+.
T Consensus 255 ~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~ 334 (876)
T 1qgr_A 255 YMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQD 334 (876)
T ss_dssp HHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhccc
Confidence 334 6677776677788899999999999988765210 01 11234555544442
Q ss_pred ----CCccchhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcch---hhHHHHHHHHH
Q 009632 136 ----GEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA---HLKTDIMSIFE 208 (530)
Q Consensus 136 ----~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~ 208 (530)
+++|.+|..+..+++.++...++...+.+++.+...+.|++|.+|.+++.+++.++...+++ .+.+.++|.+.
T Consensus 335 ~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~ 414 (876)
T 1qgr_A 335 ENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLI 414 (876)
T ss_dssp SSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 34688999999999988877777778889999999999999999999999999998876632 34567899999
Q ss_pred HhhcCCchhHHHHHHHHHHHHhhhcCc----hhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC-------C---
Q 009632 209 DLTQDDQDSVRLLAVEGCAALGKLLEP----QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG-------P--- 274 (530)
Q Consensus 209 ~~~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~-------~--- 274 (530)
..+.|+++.||..|+.+++.++...++ ..+...+++.+...+.|. +.||..++.+++.++...+ +
T Consensus 415 ~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~ 493 (876)
T 1qgr_A 415 ELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEE 493 (876)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCC
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhcccccccccc
Confidence 999999999999999999999988764 245677888888888885 8999999999999998765 1
Q ss_pred ------cccccchHHHHHHhcCCC---cHHHHHHHHHH------------------------------------------
Q 009632 275 ------EPTRMDLVPAYVRLLRDN---EAEVRIAAAGK------------------------------------------ 303 (530)
Q Consensus 275 ------~~~~~~l~~~l~~~l~d~---~~~vr~~a~~~------------------------------------------ 303 (530)
..+.+.++|.+.+.+.+. +..+|..++++
T Consensus 494 ~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d 573 (876)
T 1qgr_A 494 PATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSD 573 (876)
T ss_dssp CCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTH
T ss_pred ccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhh
Confidence 123456778777777653 23455444444
Q ss_pred --------------HHHHHHhhC-HH--HHHhhhhHhHhHhccCCc--HHHHHHHHHHHHhhccccCHH--HHHHhHHHH
Q 009632 304 --------------VTKFCRILN-PE--LAIQHILPCVKELSSDSS--QHVRSALASVIMGMAPLLGKD--ATIEQLLPI 362 (530)
Q Consensus 304 --------------l~~~~~~~~-~~--~~~~~l~~~l~~~~~d~~--~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~ 362 (530)
+..++..+| .. .+.+.++|.+...+++.+ +.+|..++..++.++...|.. .+...++|.
T Consensus 574 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~ 653 (876)
T 1qgr_A 574 RIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPF 653 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 444444444 21 223445566666666554 578999999998888766542 346778899
Q ss_pred HHHhhcCC-ChHHHHHHHHhhHHhhhhhchhH--HHhhHHHHHHHHhcC--CChHHHHHHHHHHHHHHhhhChhh--HHH
Q 009632 363 FLSLLKDE-FPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLGVGF--FDD 435 (530)
Q Consensus 363 l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~~~~--~~~~~R~~~~~~l~~l~~~~~~~~--~~~ 435 (530)
+...+.+. ++.+|..++.+++.++...|... ..+.+++.+.+.+++ .+..+|..++.+++.++..+|.++ +.+
T Consensus 654 l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~ 733 (876)
T 1qgr_A 654 LGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLE 733 (876)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHH
T ss_pred HHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHH
Confidence 99999987 89999999999999998887532 246788888888776 467899999999999999888764 467
Q ss_pred HHHHHHHHHhcCCc-----------HHHHHHHHHHHHHHHHHhChh---------H---HhhhhHHHHHhhccCC--ChH
Q 009632 436 KLGALCMQWLQDKV-----------YSIRDAAANNLKRLAEEFGPE---------W---AMQHITPQVLEMINNP--HYL 490 (530)
Q Consensus 436 ~~~~~l~~~l~d~~-----------~~Vr~~a~~~l~~l~~~~~~~---------~---~~~~i~~~l~~~~~d~--~~~ 490 (530)
.++|.+.+.+.++. ..+|..++++++.++..+|.. . +...+++.+.....|+ +..
T Consensus 734 ~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 813 (876)
T 1qgr_A 734 VVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDG 813 (876)
T ss_dssp HHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHH
T ss_pred HHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhcCCCCCHH
Confidence 78898888887542 389999999999998887531 1 1134555555555777 779
Q ss_pred HHHHHHHHHHHHhhhcCh-H--HH-HhhHHHHHHh-hccCCCC
Q 009632 491 YRMTILRAISLLAPVMGS-E--IT-CSRLLPVVIN-ASKDRYL 528 (530)
Q Consensus 491 vr~~a~~~l~~i~~~~~~-~--~~-~~~~~p~l~~-~l~D~~~ 528 (530)
+|..|+.+++.++...|. . .+ .+.++|.+.. .+.|+.+
T Consensus 814 vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~~~ 856 (876)
T 1qgr_A 814 VVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTN 856 (876)
T ss_dssp HHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhcCCH
Confidence 999999999999999887 3 22 4556776766 8877754
No 11
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.94 E-value=8.8e-24 Score=209.83 Aligned_cols=312 Identities=15% Similarity=0.130 Sum_probs=183.1
Q ss_pred CCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCC--chhHHHHHHHHHHHHhhh
Q 009632 155 SAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDD--QDSVRLLAVEGCAALGKL 232 (530)
Q Consensus 155 ~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~--~~~vr~~a~~~l~~l~~~ 232 (530)
.++++.+..+...+...+.++++.+ ..++.+++.++....+...++.++|.+.+.+.++ ++.+|..++.++..+++.
T Consensus 82 ~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~ 160 (462)
T 1ibr_B 82 AIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQD 160 (462)
T ss_dssp TSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHh
Confidence 3455566667777777777777777 7777778877776544434567777777777777 777888888888877765
Q ss_pred cCc---hhhhhccHHHHHHhcCCC--CHHHHHHHHHHHHHHHHHhCC----cccccchHHHHHHhcCCCcHHHHHHHHHH
Q 009632 233 LEP---QDCVAHILPVIVNFSQDK--SWRVRYMVANQLYELCEAVGP----EPTRMDLVPAYVRLLRDNEAEVRIAAAGK 303 (530)
Q Consensus 233 ~~~---~~~~~~~~~~l~~~~~d~--~~~vr~~~~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~ 303 (530)
+.+ ..+.+.+++.+...++|. ++.||..++++++.+...+.. ......+++.+.+.+.++++++|..++++
T Consensus 161 ~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~ 240 (462)
T 1ibr_B 161 IDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQN 240 (462)
T ss_dssp SCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred CCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 532 233455677777777776 677888887777765433221 11112356666666777777788888888
Q ss_pred HHHHHHhhCHH--HHHh-hhhHhHhHhccCCcHHHHHHHHHHHHhhcccc----------------------C-HHHHHH
Q 009632 304 VTKFCRILNPE--LAIQ-HILPCVKELSSDSSQHVRSALASVIMGMAPLL----------------------G-KDATIE 357 (530)
Q Consensus 304 l~~~~~~~~~~--~~~~-~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~----------------------~-~~~~~~ 357 (530)
+..++...+.. .+.+ .+++.+....+|.+..+|..+++.+..++... + ...+..
T Consensus 241 l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (462)
T 1ibr_B 241 LVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQ 320 (462)
T ss_dssp HHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhh
Confidence 77777655432 2233 55666655666777777777777766665321 0 011234
Q ss_pred hHHHHHHHhhcC-------CChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCh
Q 009632 358 QLLPIFLSLLKD-------EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV 430 (530)
Q Consensus 358 ~l~~~l~~~l~d-------~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~ 430 (530)
.++|.++..+.+ +++.+|..+..+++.++..+| +...+.++|.+...+++++|++|.+++.+++.++...+.
T Consensus 321 ~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~-~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~ 399 (462)
T 1ibr_B 321 YLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEP 399 (462)
T ss_dssp HHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT-TTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCT
T ss_pred hccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcH
Confidence 455555555532 234555555555555555555 233344555555555555555555555555555543331
Q ss_pred hh---HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC
Q 009632 431 GF---FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG 468 (530)
Q Consensus 431 ~~---~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~ 468 (530)
+. ....++|.+...+.|+++.||..|+.+++.++..++
T Consensus 400 ~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~ 440 (462)
T 1ibr_B 400 SQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP 440 (462)
T ss_dssp TTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcc
Confidence 11 123345555555555555555555555555555444
No 12
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.94 E-value=7.2e-24 Score=215.23 Aligned_cols=473 Identities=15% Similarity=0.121 Sum_probs=337.0
Q ss_pred cHHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhcccccccc-ccCCchHHHHHHHHHHhcccccCCCccchhcch
Q 009632 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLL 88 (530)
Q Consensus 10 ~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~ 88 (530)
.+..+.+.+++++...|..+++.+-.+ ..+|.+ . ..+.+.+.. +.+++.++|+.+...+..+++. .++....+.
T Consensus 14 e~~~i~~~L~~~~~~~k~~~~~kli~~-~~~G~d-~-~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~--~~e~~~l~~ 88 (591)
T 2vgl_B 14 EIFELKAELNNEKKEKRKEAVKKVIAA-MTVGKD-V-SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKS--QPDMAIMAV 88 (591)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHH-HHTTCC-C-GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHH--SHHHHHTTH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHH-HHCCCC-h-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHccc--CchHHHHHH
Confidence 477889999999999998888777643 344542 2 233344434 6678899999999888887662 234445566
Q ss_pred hHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChHHH-HHHHHH
Q 009632 89 PPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILK-TELRSI 167 (530)
Q Consensus 89 ~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~-~~l~~~ 167 (530)
+.+...++|+++.+|..|+.+++.+. .....+.+.|.+..++.|+++.+|..|+.++..++...++... ..+++.
T Consensus 89 n~l~kdL~~~n~~ir~~AL~~L~~i~----~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~ 164 (591)
T 2vgl_B 89 NSFVKDCEDPNPLIRALAVRTMGCIR----VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDS 164 (591)
T ss_dssp HHHGGGSSSSSHHHHHHHHHHHHTCC----SGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHcCC----hHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHH
Confidence 77777788999999999988887774 3345566788888888999999999999999988875544332 368899
Q ss_pred HHhhcCCCChhHHHHHHHHHHHHHhhhcch---hhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHH
Q 009632 168 YTQLCQDDMPMVRRSAASNLGKFAATVEPA---HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244 (530)
Q Consensus 168 l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 244 (530)
+.++++|+++.||..|+.+|..++...++. ......++.+.+.+.+.++-.+...++.+..++.. .......+++
T Consensus 165 l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~--~~~~~~~~l~ 242 (591)
T 2vgl_B 165 LRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPK--DDREAQSICE 242 (591)
T ss_dssp HHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCC--SHHHHHHHHH
T ss_pred HHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCC--ChHHHHHHHH
Confidence 999999999999999999999988764432 12234556666666777777777777766554422 1223456888
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHh--CCccc---ccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhh
Q 009632 245 VIVNFSQDKSWRVRYMVANQLYELCEAV--GPEPT---RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQH 319 (530)
Q Consensus 245 ~l~~~~~d~~~~vr~~~~~~l~~l~~~~--~~~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 319 (530)
.+...+++.++.|+..+++++..+...+ .++.. ...+.+.+..++ ++++++|..++.++..+....+ +.+.+.
T Consensus 243 ~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p-~~~~~~ 320 (591)
T 2vgl_B 243 RVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRP-EILKQE 320 (591)
T ss_dssp HHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCC-STTTTC
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhCh-HHHHHH
Confidence 8888889999999999999998876533 11211 124556666555 4778999999999999987532 211111
Q ss_pred hhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHH
Q 009632 320 ILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL 399 (530)
Q Consensus 320 l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~ 399 (530)
+ ..+.... +.++.+|..+++.+..++..-+ ...+++.+...+.+.+.++|..++.+++.++..++.. .+.++
T Consensus 321 ~-~~~~~~~-~d~~~Ir~~al~~L~~l~~~~n----v~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~--~~~~v 392 (591)
T 2vgl_B 321 I-KVFFVKY-NDPIYVKLEKLDIMIRLASQAN----IAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQS--AERCV 392 (591)
T ss_dssp T-TTTSCCT-TSCHHHHHHHHHHHHHTCCSST----HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHH--HHHHH
T ss_pred H-Hhheecc-CChHHHHHHHHHHHHHHCChhh----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhH--HHHHH
Confidence 1 1121112 3348999999999888875543 3456777778888889999999999999988876532 35678
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHHhChhHHhhhhHH
Q 009632 400 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGPEWAMQHITP 478 (530)
Q Consensus 400 ~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~-d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~ 478 (530)
+.+.+++.+....++..++.++..+....+.. ...+++.+...+. +..+.+|..++.++|+....... ...++.
T Consensus 393 ~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~--~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~---~~~~l~ 467 (591)
T 2vgl_B 393 STLLDLIQTKVNYVVQEAIVVIRDIFRKYPNK--YESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDN---ADELLE 467 (591)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSS--CCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTT---HHHHHH
T ss_pred HHHHHHHcccchHHHHHHHHHHHHHHHHCcch--HHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccC---HHHHHH
Confidence 88888888888888888888888887654432 1234555666665 46678899999998887654432 245666
Q ss_pred HHHhhccCCChHHHHHHHHHHHHHhhhcCh
Q 009632 479 QVLEMINNPHYLYRMTILRAISLLAPVMGS 508 (530)
Q Consensus 479 ~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~ 508 (530)
.+.+.+.+.+..||..++.++.++....+.
T Consensus 468 ~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~ 497 (591)
T 2vgl_B 468 SFLEGFHDESTQVQLTLLTAIVKLFLKKPS 497 (591)
T ss_dssp HHSTTCSSSCHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHhhccCCHHHHHHHHHHHHHHHhcCch
Confidence 666667777888999999999988876653
No 13
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.93 E-value=1e-23 Score=209.28 Aligned_cols=323 Identities=15% Similarity=0.193 Sum_probs=255.2
Q ss_pred HHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcCCC--CHHHHHHHHHHHHHHHHHhCCc--
Q 009632 200 KTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDK--SWRVRYMVANQLYELCEAVGPE-- 275 (530)
Q Consensus 200 ~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~--~~~vr~~~~~~l~~l~~~~~~~-- 275 (530)
...+...+.+.+.++++.+ ..+..+++.++....+...++.++|.+...+++. ++.+|..++.+++.+++....+
T Consensus 88 ~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~ 166 (462)
T 1ibr_B 88 RREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQL 166 (462)
T ss_dssp HHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGT
T ss_pred HHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhh
Confidence 4556667777788888888 8899999999988655546788999999999888 8999999999999999876322
Q ss_pred -ccccchHHHHHHhcCCC--cHHHHHHHHHHHHHHHHhhCHH----HHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhcc
Q 009632 276 -PTRMDLVPAYVRLLRDN--EAEVRIAAAGKVTKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAP 348 (530)
Q Consensus 276 -~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~~~~~~~~~----~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~ 348 (530)
...+.+++.+.+.+.|+ ++.||..+++++..+...++.. .+.+.+++.+.....+.++.+|..+++.+..++.
T Consensus 167 ~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~ 246 (462)
T 1ibr_B 167 QDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMS 246 (462)
T ss_dssp GGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 23456889999999988 7999999999999876543321 1224467777778889999999999999999886
Q ss_pred ccCHH--HHHH-hHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhc--------------------h---hHHHhhHHHHH
Q 009632 349 LLGKD--ATIE-QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--------------------I---DLLSQSLLPAI 402 (530)
Q Consensus 349 ~~~~~--~~~~-~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--------------------~---~~~~~~l~~~l 402 (530)
..+.. .+.. .+++.+...++|.++.+|..++..+..++...- . ....+.++|.+
T Consensus 247 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l 326 (462)
T 1ibr_B 247 LYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPIL 326 (462)
T ss_dssp HCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHH
Confidence 65431 2345 788888899999999999999999988876530 0 01125677887
Q ss_pred HHHhc-------CCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh---HH
Q 009632 403 VELAE-------DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE---WA 472 (530)
Q Consensus 403 ~~~~~-------~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---~~ 472 (530)
.+.+. +.+|.+|..+..+++.++..+| +.....++|.+...+.|+++.+|.+|+.++|.++...+++ ..
T Consensus 327 ~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~-~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~ 405 (462)
T 1ibr_B 327 TQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL 405 (462)
T ss_dssp HHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT-TTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT
T ss_pred HHHHHhcccccccccchHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 77664 3469999999999999999998 4556789999999999999999999999999998755422 12
Q ss_pred hhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcChH----HHHhhHHHHHHhhcc
Q 009632 473 MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE----ITCSRLLPVVINASK 524 (530)
Q Consensus 473 ~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~~----~~~~~~~p~l~~~l~ 524 (530)
...++|.+.+.++|+++.||..|++++++++...+.. .+.+.++|.+...++
T Consensus 406 l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L~ 461 (462)
T 1ibr_B 406 VIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS 461 (462)
T ss_dssp TTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHhc
Confidence 3678999999999999999999999999999988763 356667777766553
No 14
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.93 E-value=1.2e-22 Score=206.25 Aligned_cols=476 Identities=13% Similarity=0.108 Sum_probs=346.4
Q ss_pred CCCCCcCcHHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhcccccccc-ccCCchHHHHHHHHHHhcccccCCCc
Q 009632 3 MVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGV 81 (530)
Q Consensus 3 ~~~~~~~~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~~ 81 (530)
.|.+.=..+..+++.+.+++...|+.+..++..++.. .++.. ..+++.+.. +.++++.+|..|..+++++. .+
T Consensus 43 ~G~d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~-~~e~~-~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~----~~ 116 (591)
T 2vgl_B 43 VGKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKS-QPDMA-IMAVNSFVKDCEDPNPLIRALAVRTMGCIR----VD 116 (591)
T ss_dssp TTCCCGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHH-SHHHH-HTTHHHHGGGSSSSSHHHHHHHHHHHHTCC----SG
T ss_pred CCCChHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccc-CchHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHcCC----hH
Confidence 3444444577788899999999999998888877654 23322 234455555 88999999999999998874 46
Q ss_pred cchhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChH--
Q 009632 82 EHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-- 159 (530)
Q Consensus 82 ~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~-- 159 (530)
+....+.+.+..++.|+++.||..|+.++..+....+.......+.+.+..++.|+++.++..|..+++.+....++.
T Consensus 117 ~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~ 196 (591)
T 2vgl_B 117 KITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNL 196 (591)
T ss_dssp GGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCS
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccc
Confidence 778888898999999999999999999999999855432222357889999999999999999999999988765422
Q ss_pred --HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcC--c
Q 009632 160 --LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLE--P 235 (530)
Q Consensus 160 --~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~--~ 235 (530)
.....++.+...+.+.++..+...+..++.+... .+.....+++.+..++.+.++.|+..|+.++..+....+ +
T Consensus 197 ~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~--~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~ 274 (591)
T 2vgl_B 197 LDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPK--DDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDS 274 (591)
T ss_dssp CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCC--SHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTT
T ss_pred hhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCH
Confidence 2234455555555567777787777766554421 123346788888899999999999999999999876542 2
Q ss_pred hh---hhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC
Q 009632 236 QD---CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN 312 (530)
Q Consensus 236 ~~---~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~ 312 (530)
+. ....+.+.+..+. ++++.+|..++.+++.+....+.-. ...+- .+....+|+ +.||..++..+..++..-+
T Consensus 275 ~~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~~~-~~~~~-~~~~~~~d~-~~Ir~~al~~L~~l~~~~n 350 (591)
T 2vgl_B 275 DYYNMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPEIL-KQEIK-VFFVKYNDP-IYVKLEKLDIMIRLASQAN 350 (591)
T ss_dssp BSHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCSTT-TTCTT-TTSCCTTSC-HHHHHHHHHHHHHTCCSST
T ss_pred HHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChHHH-HHHHH-hheeccCCh-HHHHHHHHHHHHHHCChhh
Confidence 21 1234555555555 4788999999999999988754322 22222 222233455 8999999988887764322
Q ss_pred HHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh
Q 009632 313 PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 392 (530)
Q Consensus 313 ~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 392 (530)
.+.+++.+...+++.++.+|..++..++.++..++. ....+++.+..++.+....++..++..+..+......
T Consensus 351 ----v~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~--~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~- 423 (591)
T 2vgl_B 351 ----IAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQ--SAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPN- 423 (591)
T ss_dssp ----HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCS-
T ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChh--HHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcc-
Confidence 245677777888899999999999999999987642 3456789999999999999999999988888765432
Q ss_pred HHHhhHHHHHHHHhcC-CChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhH
Q 009632 393 LLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW 471 (530)
Q Consensus 393 ~~~~~l~~~l~~~~~~-~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~ 471 (530)
..+.+++.+.+.+.+ ..+.+|..+++++|..+..... ...++..+.+.+.+....||..++.++..+....+...
T Consensus 424 -~~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~---~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~ 499 (591)
T 2vgl_B 424 -KYESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDN---ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSET 499 (591)
T ss_dssp -SCCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTT---HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCSTT
T ss_pred -hHHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccC---HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHH
Confidence 124677777777764 5688999999999998766543 23556666666677889999999999999987654321
Q ss_pred HhhhhHHHHHhh-ccC-CChHHHHHHHHHHHHHh
Q 009632 472 AMQHITPQVLEM-INN-PHYLYRMTILRAISLLA 503 (530)
Q Consensus 472 ~~~~i~~~l~~~-~~d-~~~~vr~~a~~~l~~i~ 503 (530)
...+..+.+. ..| .|.+||..|...+.-+.
T Consensus 500 --~~~i~~ll~~~~~d~~d~evrdRA~~y~~ll~ 531 (591)
T 2vgl_B 500 --QELVQQVLSLATQDSDNPDLRDRGYIYWRLLS 531 (591)
T ss_dssp --HHHHHHHHHHHHTTCCCHHHHHHHHHHHTTTT
T ss_pred --HHHHHHHHHHhhhcCCChHHHHHHHHHHHHHC
Confidence 2344444444 355 68899999998877653
No 15
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.92 E-value=4e-22 Score=208.35 Aligned_cols=494 Identities=12% Similarity=0.047 Sum_probs=340.0
Q ss_pred cHHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhcccccccc-ccCCchHHHHHHHHHHhcccccCCCcc-c--hh
Q 009632 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVE-H--AH 85 (530)
Q Consensus 10 ~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~~~-~--~~ 85 (530)
.+..+++.|.+++...|..+.+.+...... ......+|.|.. +.++++.+|..++.+|+.++..-.... . ..
T Consensus 116 ~i~~lv~~L~~~~~~~r~~a~~~l~~~~~~----~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~ 191 (780)
T 2z6g_A 116 AHPTNVQRLAEPSQMLKHAVVNLINYQDDA----ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSP 191 (780)
T ss_dssp ----------CCSCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCH
T ss_pred cHHHHHHHhcCccHHHHHHHHHHHHhhhHH----HHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhcc
Confidence 357889999999998888888777654321 222344555555 457789999999999999876321110 0 12
Q ss_pred cchhHHHhhhc-ccchHHHHHHHHHHHHHHhhcCh--hhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChH---
Q 009632 86 VLLPPLETLCT-VEETCVRDKAVESLCRIGSQMRE--SDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI--- 159 (530)
Q Consensus 86 ~l~~~l~~l~~-d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~--- 159 (530)
..++.|..++. +++..+|..|+.+|..++..-.. .......+|.+..++.+++..+|..++.++..++..-...
T Consensus 192 ~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~ 271 (780)
T 2z6g_A 192 QMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMA 271 (780)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHH
T ss_pred ChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHH
Confidence 34555555554 45899999999999998764221 1123347888888888888899999999999887653322
Q ss_pred H-HHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc---hhhHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhhhcC
Q 009632 160 L-KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQDS-VRLLAVEGCAALGKLLE 234 (530)
Q Consensus 160 ~-~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~-vr~~a~~~l~~l~~~~~ 234 (530)
. ....++.+..++.++++.++..++.++..++..... .......++.+.+++.+.++. .+..+..++..++..-.
T Consensus 272 v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~ 351 (780)
T 2z6g_A 272 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS 351 (780)
T ss_dssp HHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTT
T ss_pred HHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChH
Confidence 2 346889999999999999999999999988742111 112234677888888877654 55567778887775322
Q ss_pred c--hhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC
Q 009632 235 P--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN 312 (530)
Q Consensus 235 ~--~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~ 312 (530)
. ......++|.+..++.+.+..++..++.++..++...........++|.+.+++.++++++|..|+.+|..++..-.
T Consensus 352 ~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~ 431 (780)
T 2z6g_A 352 NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY 431 (780)
T ss_dssp HHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCH
T ss_pred HHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH
Confidence 1 11234578899999999999999999999999987655444456789999999999999999999999999876321
Q ss_pred HH---HHHhhhhHhHhHhccC-Cc-HHHHHHHHHHHHhhccccCHH------HHHHhHHHHHHHhhcCCCh-HHHHHHHH
Q 009632 313 PE---LAIQHILPCVKELSSD-SS-QHVRSALASVIMGMAPLLGKD------ATIEQLLPIFLSLLKDEFP-DVRLNIIS 380 (530)
Q Consensus 313 ~~---~~~~~l~~~l~~~~~d-~~-~~vr~~~~~~l~~l~~~~~~~------~~~~~l~~~l~~~l~d~~~-~vr~~a~~ 380 (530)
.. ......++.+.+++.+ .+ ..+|..++.+++.++...+.. ......+|.+..+|.+++. .+|..++.
T Consensus 432 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~ 511 (780)
T 2z6g_A 432 KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVG 511 (780)
T ss_dssp HHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHH
Confidence 11 1113456666666654 33 489999999999997644321 1223568999999998764 99999999
Q ss_pred hhHHhhhhhchh--HHHhhHHHHHHHHhcCCCh----------------------HHHHHHHHHHHHHHhhhChh--hHH
Q 009632 381 KLDQVNQVIGID--LLSQSLLPAIVELAEDRHW----------------------RVRLAIIEYIPLLASQLGVG--FFD 434 (530)
Q Consensus 381 ~l~~l~~~~~~~--~~~~~l~~~l~~~~~~~~~----------------------~~R~~~~~~l~~l~~~~~~~--~~~ 434 (530)
+++++...-... .....++|.|.+++.+.++ .++..++.+|..++...... ...
T Consensus 512 aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~ 591 (780)
T 2z6g_A 512 LIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRG 591 (780)
T ss_dssp HHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHH
Confidence 999997532111 1124567777777655433 35666777777765321111 112
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh--ChhHHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcC
Q 009632 435 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF--GPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG 507 (530)
Q Consensus 435 ~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~--~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~ 507 (530)
...+|.+..++.++..+||..|+.+|+.+...- .........++.|.+++++++..+|..|..++.++...-+
T Consensus 592 ~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 592 LNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp TCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSC
T ss_pred CCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence 346889999999999999999999999886321 1111224578899999999999999999999999988665
No 16
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.91 E-value=6.7e-22 Score=195.52 Aligned_cols=340 Identities=11% Similarity=0.047 Sum_probs=256.6
Q ss_pred hhHHHhhhcccchHHHHHHHHHHHHHHhh-cCh---hhhhh-hHHHHHHHHhcCC-ccchhHHHHhHhhhhcCCCChH--
Q 009632 88 LPPLETLCTVEETCVRDKAVESLCRIGSQ-MRE---SDLVD-WYIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPDI-- 159 (530)
Q Consensus 88 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~-~~~---~~~~~-~l~~~l~~l~~~~-~~~~r~~~~~~l~~l~~~~~~~-- 159 (530)
++.+...++++++.+|..|+.+|..++.. ..+ ..... .++|.+..++.++ ++.+|..++.+++.++....+.
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 67777777888899999999999998652 221 12233 5778877777777 7889999999999888754432
Q ss_pred --HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc---hhhHHHHHHHHHHhhcC-CchhHHHHHHHHHHHHhhhc
Q 009632 160 --LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQD-DQDSVRLLAVEGCAALGKLL 233 (530)
Q Consensus 160 --~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d-~~~~vr~~a~~~l~~l~~~~ 233 (530)
....++|.+..++.++++.+|..++.+|+.++...+. ......+++.+.+++.+ .+..+|..++.++..++...
T Consensus 102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~ 181 (450)
T 2jdq_A 102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181 (450)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 2246889999999999999999999999999875322 12234578889999985 68899999999999999754
Q ss_pred Cc---hhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC---cccccchHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 009632 234 EP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKF 307 (530)
Q Consensus 234 ~~---~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~ 307 (530)
++ ......++|.+..++.+.++.+|..++.+++.++....+ ......++|.+.+++.++++++|..++.+++.+
T Consensus 182 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 261 (450)
T 2jdq_A 182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI 261 (450)
T ss_dssp SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence 22 234467899999999999999999999999988753111 111245789999999999999999999999998
Q ss_pred HHhhCHH---HHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCH---HHHHHhHHHHHHHhhcCCChHHHHHHHHh
Q 009632 308 CRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNIISK 381 (530)
Q Consensus 308 ~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~ 381 (530)
+...+.. .....++|.+..++.++++.+|..++.+++.++..... ......++|.+..+++++++.+|..++.+
T Consensus 262 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~ 341 (450)
T 2jdq_A 262 VTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWA 341 (450)
T ss_dssp TTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred hhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 7643221 12235788888888888999999999999988753221 11224678888888888888899999888
Q ss_pred hHHhhhhhchhH----HHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 009632 382 LDQVNQVIGIDL----LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 427 (530)
Q Consensus 382 l~~l~~~~~~~~----~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~ 427 (530)
+++++....++. ....++|.|..++.++++.+|..++.++..++..
T Consensus 342 L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 391 (450)
T 2jdq_A 342 ITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRL 391 (450)
T ss_dssp HHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 888876433222 2245788888888888888888888888888763
No 17
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.91 E-value=1.7e-21 Score=196.33 Aligned_cols=346 Identities=12% Similarity=0.069 Sum_probs=268.2
Q ss_pred HHHHHHHHhhcCCC-ChhHHHHHHHHHHHHHhhhcc---hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc--
Q 009632 162 TELRSIYTQLCQDD-MPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP-- 235 (530)
Q Consensus 162 ~~l~~~l~~l~~d~-~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-- 235 (530)
..++|.+..++.++ ++.+|..++.+|+.++...+. .......+|.+.+++.++++.+|..|+.+|..++..-+.
T Consensus 129 ~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~ 208 (530)
T 1wa5_B 129 AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 208 (530)
T ss_dssp TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccch
Confidence 34678888888887 899999999999998863221 122345788899999988999999999999999864221
Q ss_pred -hhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC---cccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhh
Q 009632 236 -QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL 311 (530)
Q Consensus 236 -~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~ 311 (530)
......++|.+..++.+.++.+|..++.+|+.++..-++ ......++|.+..++.+++++++..++.+|..++...
T Consensus 209 ~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~ 288 (530)
T 1wa5_B 209 DYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGP 288 (530)
T ss_dssp HHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC
Confidence 112346889999999998999999999999999864311 1224578999999999999999999999999998642
Q ss_pred CH--H-HHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCH---HHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHh
Q 009632 312 NP--E-LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQV 385 (530)
Q Consensus 312 ~~--~-~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l 385 (530)
+. . .....++|.+..++.+.++.+|..++.+++.++...+. ......++|.+..+|.++++.+|..|+.+++.+
T Consensus 289 ~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l 368 (530)
T 1wa5_B 289 QEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNI 368 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 21 1 22246788899999999999999999999999864321 122346889999999999999999999999998
Q ss_pred hhhhch---hHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCh--hh----HHHHHHHHHHHHhcCCcHHHHHHH
Q 009632 386 NQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV--GF----FDDKLGALCMQWLQDKVYSIRDAA 456 (530)
Q Consensus 386 ~~~~~~---~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~--~~----~~~~~~~~l~~~l~d~~~~Vr~~a 456 (530)
+..... ..+...++|.+..++.++++.+|..++.+++.++...+. +. ....++|.+..++.++++.||..+
T Consensus 369 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a 448 (530)
T 1wa5_B 369 TAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVT 448 (530)
T ss_dssp TTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHH
T ss_pred HcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHH
Confidence 753211 112246889999999999999999999999999876443 22 223478999999999999999999
Q ss_pred HHHHHHHHHHhChh--------------HHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcC
Q 009632 457 ANNLKRLAEEFGPE--------------WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG 507 (530)
Q Consensus 457 ~~~l~~l~~~~~~~--------------~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~ 507 (530)
+.+|..++...... ......++.+..+.++++..++..|..++.++...-.
T Consensus 449 l~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~~ 513 (530)
T 1wa5_B 449 LDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEE 513 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCccc
Confidence 99999998764321 1113457888889999999999999999998876533
No 18
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.91 E-value=2.7e-21 Score=191.11 Aligned_cols=378 Identities=12% Similarity=0.037 Sum_probs=290.1
Q ss_pred HHHHHHHhcCCccchhHHHHhHhhhhcC-CCCh---H-HHH-HHHHHHHhhcCCC-ChhHHHHHHHHHHHHHhhhcc---
Q 009632 127 IPLVKRLAAGEWFTARVSACGLFHIAYP-SAPD---I-LKT-ELRSIYTQLCQDD-MPMVRRSAASNLGKFAATVEP--- 196 (530)
Q Consensus 127 ~~~l~~l~~~~~~~~r~~~~~~l~~l~~-~~~~---~-~~~-~l~~~l~~l~~d~-~~~vR~~a~~~l~~l~~~~~~--- 196 (530)
++.+...++++++.+|..+...+..+.. ...+ . ... .++|.+.+++.++ ++.+|..++.++..++..-+.
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 4555556677788899999998887643 1121 1 223 6889999988888 899999999999999863222
Q ss_pred hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc---hhhhhccHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHh
Q 009632 197 AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP---QDCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAV 272 (530)
Q Consensus 197 ~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~~~d-~~~~vr~~~~~~l~~l~~~~ 272 (530)
......++|.+.+++.++++.+|..|+.+|+.++...+. ......++|.+..++++ .++.+|..++.+++.++...
T Consensus 102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~ 181 (450)
T 2jdq_A 102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181 (450)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 222356899999999999999999999999999875322 11234688999998885 78999999999999998653
Q ss_pred CC---cccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH---HHHhhhhHhHhHhccCCcHHHHHHHHHHHHhh
Q 009632 273 GP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGM 346 (530)
Q Consensus 273 ~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l 346 (530)
++ ......++|.+.+++.+++++++..++.++..++...... .....++|.+..++.++++.+|..++..++.+
T Consensus 182 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 261 (450)
T 2jdq_A 182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI 261 (450)
T ss_dssp SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence 11 1223678999999999999999999999999998643211 22345788888899999999999999999999
Q ss_pred ccccCHH---HHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch--h-HHHhhHHHHHHHHhcCCChHHHHHHHHH
Q 009632 347 APLLGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--D-LLSQSLLPAIVELAEDRHWRVRLAIIEY 420 (530)
Q Consensus 347 ~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~-~~~~~l~~~l~~~~~~~~~~~R~~~~~~ 420 (530)
+...+.. .....++|.+..+++++++.+|..++.+++.++..... . .+...++|.+..++.++++.+|..++.+
T Consensus 262 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~ 341 (450)
T 2jdq_A 262 VTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWA 341 (450)
T ss_dssp TTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred hhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 8654321 12235889999999999999999999999999752211 1 1224788999999999999999999999
Q ss_pred HHHHHhhhChhh----HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhH---------Hh-----hhhHHHHHh
Q 009632 421 IPLLASQLGVGF----FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW---------AM-----QHITPQVLE 482 (530)
Q Consensus 421 l~~l~~~~~~~~----~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~---------~~-----~~i~~~l~~ 482 (530)
++.++...+++. +...++|.+..++.++++.||..++.+++.++...+... +. ...++.+..
T Consensus 342 L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~ 421 (450)
T 2jdq_A 342 ITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEF 421 (450)
T ss_dssp HHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHH
Confidence 999987544332 234589999999999999999999999999987543210 11 123677778
Q ss_pred hccCCChHHHHHHHHHHHHHhh
Q 009632 483 MINNPHYLYRMTILRAISLLAP 504 (530)
Q Consensus 483 ~~~d~~~~vr~~a~~~l~~i~~ 504 (530)
+.+++++.+|..+..++.++..
T Consensus 422 l~~~~~~~v~~~a~~~l~~~~~ 443 (450)
T 2jdq_A 422 LQSHENQEIYQKAFDLIEHYFG 443 (450)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHC
T ss_pred HHcCCCHHHHHHHHHHHHHHCC
Confidence 8888999999999999998764
No 19
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.90 E-value=1.3e-20 Score=193.94 Aligned_cols=470 Identities=11% Similarity=0.029 Sum_probs=307.5
Q ss_pred cCCchHHHHHHHHHHhcccccCCCcc-c--hhcchhHHHhhhc-ccchHHHHHHHHHHHHHHhhcCh--hhhhhhHHHHH
Q 009632 57 NDDDDEVLLAMAEELGVFIPYVGGVE-H--AHVLLPPLETLCT-VEETCVRDKAVESLCRIGSQMRE--SDLVDWYIPLV 130 (530)
Q Consensus 57 ~d~~~~vr~~~~~~l~~~~~~~~~~~-~--~~~l~~~l~~l~~-d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l 130 (530)
.++++.+|..++.+|++++..-.... . ....++.|...+. +++..+|..|+.+|..++..-.. .......+|.+
T Consensus 24 ~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~L 103 (644)
T 2z6h_A 24 NDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPAL 103 (644)
T ss_dssp TCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHH
Confidence 34555555555555555544211000 0 0122333433333 33666777777777766543211 01122356666
Q ss_pred HHHhcCCccchhHHHHhHhhhhcCCCChH----HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc---hhhHHHH
Q 009632 131 KRLAAGEWFTARVSACGLFHIAYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDI 203 (530)
Q Consensus 131 ~~l~~~~~~~~r~~~~~~l~~l~~~~~~~----~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l 203 (530)
..+++++++.+|..++..+..++...... .....++.+..++.+++++++..++.+|..++...+. .......
T Consensus 104 v~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~ 183 (644)
T 2z6h_A 104 VKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG 183 (644)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCC
Confidence 66666666677777777776665443221 1245788888888888899999999999888853221 1223356
Q ss_pred HHHHHHhhcCCc-hhHHHHHHHHHHHHhhhcCc--hhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccc
Q 009632 204 MSIFEDLTQDDQ-DSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMD 280 (530)
Q Consensus 204 ~~~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ 280 (530)
++.+.+++.+.+ +.++..+..++..++..-.. .......+|.+..++.+.+..++..++.+|.+++...........
T Consensus 184 v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~ 263 (644)
T 2z6h_A 184 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEG 263 (644)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHH
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhh
Confidence 788888887764 45777888888888753221 112234788888899998999999999999999876544444557
Q ss_pred hHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH--H-HHHhhhhHhHhHhccCC--cHHHHHHHHHHHHhhccccCHHH-
Q 009632 281 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP--E-LAIQHILPCVKELSSDS--SQHVRSALASVIMGMAPLLGKDA- 354 (530)
Q Consensus 281 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~--~-~~~~~l~~~l~~~~~d~--~~~vr~~~~~~l~~l~~~~~~~~- 354 (530)
++|.+.+++.++++++|..++.+|..++..-.. . ......++.+..++.+. .+.++..++.+++.++...+...
T Consensus 264 ~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~ 343 (644)
T 2z6h_A 264 LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEM 343 (644)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHH
Confidence 899999999999999999999999998763211 1 12234567777666642 37999999999999976544221
Q ss_pred -----HHHhHHHHHHHhhcCCC-hHHHHHHHHhhHHhhhhhch--hHHHhhHHHHHHHHhcCCCh---------------
Q 009632 355 -----TIEQLLPIFLSLLKDEF-PDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVELAEDRHW--------------- 411 (530)
Q Consensus 355 -----~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~~~~~--------------- 411 (530)
.....+|.+..+|.+++ +.+|..++.+++++...-.. ......++|.|.+++.+.++
T Consensus 344 ~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~ 423 (644)
T 2z6h_A 344 AQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQF 423 (644)
T ss_dssp HHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------
T ss_pred HHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchh
Confidence 22357899999999875 69999999999998753211 11234677777777665433
Q ss_pred -------HHHHHHHHHHHHHHhhhChhh--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh--ChhHHhhhhHHHH
Q 009632 412 -------RVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF--GPEWAMQHITPQV 480 (530)
Q Consensus 412 -------~~R~~~~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~--~~~~~~~~i~~~l 480 (530)
.++..++.++..++....... .....+|.+..++.++..+||..++.+|+.+...- .........++.+
T Consensus 424 ~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L 503 (644)
T 2z6h_A 424 VEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPL 503 (644)
T ss_dssp CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHH
T ss_pred cccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHH
Confidence 455566667766654321111 12346899999999999999999999999887421 1111224568889
Q ss_pred HhhccCCChHHHHHHHHHHHHHhhhcChHHHHhhHHHHHHhhccCC
Q 009632 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDR 526 (530)
Q Consensus 481 ~~~~~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~p~l~~~l~D~ 526 (530)
..++.+++..+|..|.++++.+...-+......--++.+..+..+.
T Consensus 504 ~~ll~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~il~~~~~~~ 549 (644)
T 2z6h_A 504 TELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTE 549 (644)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhccCcHhhhcccchHHHHHHHhCC
Confidence 9999999999999999999999886653321111255566555543
No 20
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.90 E-value=4.7e-21 Score=193.58 Aligned_cols=459 Identities=12% Similarity=0.023 Sum_probs=316.2
Q ss_pred hhhhcccccccc-ccCCchHHHHHHHHHHhcccccCCCcc-ch--hcchhHHHhhhc-ccchHHHHHHHHHHHHHHhhcC
Q 009632 44 RTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVE-HA--HVLLPPLETLCT-VEETCVRDKAVESLCRIGSQMR 118 (530)
Q Consensus 44 ~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~~~-~~--~~l~~~l~~l~~-d~~~~vR~~a~~~l~~l~~~~~ 118 (530)
......+|.+.. +.++++.+|..++..|++++..-.... .. ...++.+..++. ++++.+|..++.+|..++..-.
T Consensus 13 ~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~ 92 (529)
T 1jdh_A 13 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE 92 (529)
T ss_dssp ----CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHH
T ss_pred hhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCch
Confidence 344456777766 778899999999999999876321110 01 134555555554 4588999999999999876522
Q ss_pred hhh--hhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChH----HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHh
Q 009632 119 ESD--LVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAA 192 (530)
Q Consensus 119 ~~~--~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~----~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~ 192 (530)
... .....+|.+..+++++++.+|..++..+..++...... .....+|.+..++.++++++|..++.+|..++.
T Consensus 93 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~ 172 (529)
T 1jdh_A 93 GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY 172 (529)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 211 12236788888888888889999999998888764332 236688999999999999999999999998876
Q ss_pred hhcc---hhhHHHHHHHHHHhhcCCch-hHHHHHHHHHHHHhhhcCc--hhhhhccHHHHHHhcCCCCHHHHHHHHHHHH
Q 009632 193 TVEP---AHLKTDIMSIFEDLTQDDQD-SVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLY 266 (530)
Q Consensus 193 ~~~~---~~~~~~l~~~l~~~~~d~~~-~vr~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~ 266 (530)
.-+. .......++.+.+++.+.++ ..+..+..++..++..-.. .......+|.+..++.+.+..++..++.++.
T Consensus 173 ~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~ 252 (529)
T 1jdh_A 173 GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR 252 (529)
T ss_dssp TCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHH
Confidence 3221 11223467777777776654 4555677777777643211 1122457888899999999999999999999
Q ss_pred HHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC--HH-HHHhhhhHhHhHhccC--CcHHHHHHHHH
Q 009632 267 ELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN--PE-LAIQHILPCVKELSSD--SSQHVRSALAS 341 (530)
Q Consensus 267 ~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~--~~-~~~~~l~~~l~~~~~d--~~~~vr~~~~~ 341 (530)
.++............+|.+.+++.++++++|..++.++..++..-. .. ......+|.+.+++.+ .++.++..++.
T Consensus 253 ~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~ 332 (529)
T 1jdh_A 253 NLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC 332 (529)
T ss_dssp HHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHH
Confidence 9987654444456789999999999999999999999999976321 11 1223456666666653 44899999999
Q ss_pred HHHhhccccCHH------HHHHhHHHHHHHhhcCCC-hHHHHHHHHhhHHhhhhhch--hHHHhhHHHHHHHHhcCCChH
Q 009632 342 VIMGMAPLLGKD------ATIEQLLPIFLSLLKDEF-PDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVELAEDRHWR 412 (530)
Q Consensus 342 ~l~~l~~~~~~~------~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~~~~~~ 412 (530)
.++.++...+.. ......+|.+..++++++ +.+|..++.++.++...-.. ......++|.+.+++.+.++.
T Consensus 333 ~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~ 412 (529)
T 1jdh_A 333 ALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD 412 (529)
T ss_dssp HHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHH
Confidence 999997653321 122356899999999886 59999999999998753211 112346788888888887777
Q ss_pred HHHHHHHHHHH----------------------HHhhhCh--hhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH--
Q 009632 413 VRLAIIEYIPL----------------------LASQLGV--GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE-- 466 (530)
Q Consensus 413 ~R~~~~~~l~~----------------------l~~~~~~--~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~-- 466 (530)
+|..+++++++ ++..... .......+|.+..++.|+..+||..++.+++.+...
T Consensus 413 v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~ 492 (529)
T 1jdh_A 413 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKE 492 (529)
T ss_dssp HC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHH
Confidence 87766554443 3221110 012234578999999999999999999999987632
Q ss_pred hChhHHhhhhHHHHHhhccCCChHHHHHHHHHHHHH
Q 009632 467 FGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLL 502 (530)
Q Consensus 467 ~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i 502 (530)
..........++.+..+++++|.++|..|.+++.++
T Consensus 493 ~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 493 AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 111122356789999999999999999999999876
No 21
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.90 E-value=1.6e-19 Score=183.95 Aligned_cols=467 Identities=10% Similarity=0.068 Sum_probs=341.2
Q ss_pred chHHHHHHHHHHhcccccCCC----ccchhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChh---hh-hhhHHHHHH
Q 009632 60 DDEVLLAMAEELGVFIPYVGG----VEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES---DL-VDWYIPLVK 131 (530)
Q Consensus 60 ~~~vr~~~~~~l~~~~~~~~~----~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~---~~-~~~l~~~l~ 131 (530)
.++.|..++-++.++.+.++. +.+...+-.++.......+..-...|+.++..+....++. .+ ....+|.+.
T Consensus 217 ~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li 296 (810)
T 3now_A 217 TGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMIL 296 (810)
T ss_dssp CTTHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHH
Confidence 568999999999998887664 2234444555555555555555666777888887754432 12 334678888
Q ss_pred HHhcCCccchhHHHHhHhhhhcCCCChH--HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhc---c-h----hhHH
Q 009632 132 RLAAGEWFTARVSACGLFHIAYPSAPDI--LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVE---P-A----HLKT 201 (530)
Q Consensus 132 ~l~~~~~~~~r~~~~~~l~~l~~~~~~~--~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~---~-~----~~~~ 201 (530)
.++.+++..++..|..+++.++..-... ..+.-.|.+..++.+.+..+|..|+.+|..+....+ + . .-..
T Consensus 297 ~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~ 376 (810)
T 3now_A 297 AMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAAL 376 (810)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHH
Confidence 8888888889999999999877662211 222234999999998889999999999999875322 1 1 2245
Q ss_pred HHHHHHHHhhcCC--chhHHHHHHHHHHHHhhhcCc-hhhh--hccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCc-
Q 009632 202 DIMSIFEDLTQDD--QDSVRLLAVEGCAALGKLLEP-QDCV--AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE- 275 (530)
Q Consensus 202 ~l~~~l~~~~~d~--~~~vr~~a~~~l~~l~~~~~~-~~~~--~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~- 275 (530)
.+++.+.+++.++ ++++|..|+++|.+++..... ..+. ..++|.+..++++.+..+...++.+|++++......
T Consensus 377 ~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~ 456 (810)
T 3now_A 377 KLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQE 456 (810)
T ss_dssp HHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCC
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhh
Confidence 7889999999888 788999999999999865332 1222 358888999988888889999999999998743100
Q ss_pred ----------------------------------ccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH--HHHhh
Q 009632 276 ----------------------------------PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQH 319 (530)
Q Consensus 276 ----------------------------------~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~ 319 (530)
......+|.|.++++.+++.+|..|+++|..++..-... .....
T Consensus 457 ~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~G 536 (810)
T 3now_A 457 MLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEG 536 (810)
T ss_dssp CCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTT
T ss_pred hhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCC
Confidence 011247899999999999999999999999998532211 23345
Q ss_pred hhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHH-----HHhHHHHHHHhhcCC-ChHHHHHHHHhhHHhhhhhc---
Q 009632 320 ILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDAT-----IEQLLPIFLSLLKDE-FPDVRLNIISKLDQVNQVIG--- 390 (530)
Q Consensus 320 l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~-----~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~--- 390 (530)
.+|.+..++.+.+...|..++.++..++....++.. ....+|.+..+|..+ +...+..|+.+|.++...-.
T Consensus 537 aip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~ 616 (810)
T 3now_A 537 GVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVR 616 (810)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred CHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHH
Confidence 688888888888899999999999988754443321 234788899999854 44456678889988875421
Q ss_pred hhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCh-hhHH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh
Q 009632 391 IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV-GFFD--DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF 467 (530)
Q Consensus 391 ~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~-~~~~--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~ 467 (530)
...+....+|.+..++.+++..+|..|++++++++..-.. ..+. ...+|.+..++..++..+|..|+.+|+.+....
T Consensus 617 ~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s 696 (810)
T 3now_A 617 QRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVS 696 (810)
T ss_dssp HHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC
Confidence 1122346789999999999999999999999999763211 1122 246889999999999999999999999998742
Q ss_pred C---hhHHh-hhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcC---hHHHHhhHHHHHHhhccCC
Q 009632 468 G---PEWAM-QHITPQVLEMINNPHYLYRMTILRAISLLAPVMG---SEITCSRLLPVVINASKDR 526 (530)
Q Consensus 468 ~---~~~~~-~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~---~~~~~~~~~p~l~~~l~D~ 526 (530)
. ..... ...+|.|..++.+++..+|..|++++.++...-+ ......-.+|.|..+++++
T Consensus 697 ~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~ 762 (810)
T 3now_A 697 VKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLP 762 (810)
T ss_dssp HHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCT
T ss_pred HHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCc
Confidence 1 12223 5688999999999999999999999999986321 2234556788898888654
No 22
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.89 E-value=1.1e-19 Score=185.19 Aligned_cols=482 Identities=12% Similarity=0.075 Sum_probs=343.3
Q ss_pred HHHHHHHhhcHHHHHHhhChHhhhh----cccccccc-ccCCchHHHHHHHHHHhcccccCCC---ccc-hhcchhHHHh
Q 009632 23 IQLRLNSIRRLSTIARALGEERTRK----ELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGG---VEH-AHVLLPPLET 93 (530)
Q Consensus 23 ~~~R~~a~~~l~~~~~~~~~~~~~~----~l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~---~~~-~~~l~~~l~~ 93 (530)
+..|..+.-.+..+-+.++.+..++ .+-.++.. ....+.+-...++.++.++...... ..+ ....++.|..
T Consensus 218 ~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~ 297 (810)
T 3now_A 218 GSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILA 297 (810)
T ss_dssp TTHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHH
Confidence 3456666666666665555322222 22233333 3344445555567777666552210 111 2356678888
Q ss_pred hhcccchHHHHHHHHHHHHHHhhcCh-hhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCC---------hHHHHH
Q 009632 94 LCTVEETCVRDKAVESLCRIGSQMRE-SDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAP---------DILKTE 163 (530)
Q Consensus 94 l~~d~~~~vR~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~---------~~~~~~ 163 (530)
++++++..++..|+.+++.++..-.. +.+...-.|.+..+.++++..+|..+...+..+....+ ......
T Consensus 298 Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~ 377 (810)
T 3now_A 298 MATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALK 377 (810)
T ss_dssp HHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHH
Confidence 88899999999999999998775221 11222223888888888777888888888877753211 123567
Q ss_pred HHHHHHhhcCCC--ChhHHHHHHHHHHHHHhhhcc-hh-h-HHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCch--
Q 009632 164 LRSIYTQLCQDD--MPMVRRSAASNLGKFAATVEP-AH-L-KTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ-- 236 (530)
Q Consensus 164 l~~~l~~l~~d~--~~~vR~~a~~~l~~l~~~~~~-~~-~-~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~-- 236 (530)
+.+.+..++.++ ++++|+.++.+|..+...... +. . ...++|.+.+++..++..++..|+.++.+++.....+
T Consensus 378 Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~ 457 (810)
T 3now_A 378 LAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEM 457 (810)
T ss_dssp HHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCC
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhh
Confidence 889999888877 899999999999999764332 12 2 2468999999999988999999999999999854210
Q ss_pred ---------------------------------hhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC--Ccccccch
Q 009632 237 ---------------------------------DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG--PEPTRMDL 281 (530)
Q Consensus 237 ---------------------------------~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~--~~~~~~~l 281 (530)
......+|.+..++++.++.+|..++++|++++..-. ........
T Consensus 458 ~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Ga 537 (810)
T 3now_A 458 LPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGG 537 (810)
T ss_dssp CCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTH
T ss_pred hHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCC
Confidence 0122478999999999999999999999999973210 01123457
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHH-----HhhhhHhHhHhccCC-cHHHHHHHHHHHHhhccccCH---
Q 009632 282 VPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA-----IQHILPCVKELSSDS-SQHVRSALASVIMGMAPLLGK--- 352 (530)
Q Consensus 282 ~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~-----~~~l~~~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~--- 352 (530)
+|.++.++.+.++.+|..|+.+|..++....++.. ....+|.+.+++... +...+..++.++..++..-..
T Consensus 538 ip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~ 617 (810)
T 3now_A 538 VKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQ 617 (810)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHH
Confidence 89999999999999999999999999876555421 123677777877644 445566788888888764211
Q ss_pred HHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch-hHHH--hhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhC
Q 009632 353 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI-DLLS--QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG 429 (530)
Q Consensus 353 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~~~~--~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~ 429 (530)
.......+|.+..++.+++..||..|+.++++++..-.. ..+. ...++.|..++..++..+|..|+.+++.++....
T Consensus 618 ~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~ 697 (810)
T 3now_A 618 RIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSV 697 (810)
T ss_dssp HHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCH
Confidence 112335689999999999999999999999998753211 1111 3578899999999999999999999999987421
Q ss_pred --hh-hHH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh----HHhhhhHHHHHhhccCC---ChHHHHHHHHH
Q 009632 430 --VG-FFD-DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE----WAMQHITPQVLEMINNP---HYLYRMTILRA 498 (530)
Q Consensus 430 --~~-~~~-~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~----~~~~~i~~~l~~~~~d~---~~~vr~~a~~~ 498 (530)
.. .+. ...+|.+..++.+++..+|..|+.++..+... +.+ ......++.|.++++++ +..+++.|.++
T Consensus 698 ~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~a 776 (810)
T 3now_A 698 KCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA-GEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQC 776 (810)
T ss_dssp HHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHH
Confidence 12 233 46889999999999999999999999999863 222 23366799999988654 78999999999
Q ss_pred HHHHhhh
Q 009632 499 ISLLAPV 505 (530)
Q Consensus 499 l~~i~~~ 505 (530)
+..+.+.
T Consensus 777 L~~ll~~ 783 (810)
T 3now_A 777 LAAAERY 783 (810)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 9998764
No 23
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.89 E-value=3e-20 Score=191.34 Aligned_cols=480 Identities=12% Similarity=0.058 Sum_probs=336.8
Q ss_pred cCcHHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhh-h--hcccccccc-ccC-CchHHHHHHHHHHhcccccCCCcc
Q 009632 8 LYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERT-R--KELIPFLSE-NND-DDDEVLLAMAEELGVFIPYVGGVE 82 (530)
Q Consensus 8 ~~~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~-~--~~l~~~l~~-~~d-~~~~vr~~~~~~l~~~~~~~~~~~ 82 (530)
.-.+..|+..++++++..|..|+..|..++........ . ...++.+.. +.+ +++++|..++.+|..++..-....
T Consensus 13 ~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~ 92 (644)
T 2z6h_A 13 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLL 92 (644)
T ss_dssp TTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred hchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHH
Confidence 34578899999999999999999999999875432211 1 134555555 443 488999999999988765311111
Q ss_pred --chhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhh---hhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCC
Q 009632 83 --HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESD---LVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAP 157 (530)
Q Consensus 83 --~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~ 157 (530)
.....++.|..+++++++.+|..|+.+|.+++....... .....+|.+..++.++++.++..++.++..++...+
T Consensus 93 ~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~ 172 (644)
T 2z6h_A 93 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ 172 (644)
T ss_dssp HHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCc
Confidence 122467788888888999999999999999998753321 234578888888888887888888888888775432
Q ss_pred hH----HHHHHHHHHHhhcCCCC-hhHHHHHHHHHHHHHhhhcc--hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHh
Q 009632 158 DI----LKTELRSIYTQLCQDDM-PMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALG 230 (530)
Q Consensus 158 ~~----~~~~l~~~l~~l~~d~~-~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~ 230 (530)
+. .....++.+..++.+.+ ..++..++.+|..++..-.. .......++.+.+++.+.+..++..++.++..++
T Consensus 173 ~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~ 252 (644)
T 2z6h_A 173 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 252 (644)
T ss_dssp HHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 21 12345677777777654 56788888888888753221 2223457899999999999999999999999999
Q ss_pred hhcCchhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC---CcccccchHHHHHHhcCCC--cHHHHHHHHHHHH
Q 009632 231 KLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLLRDN--EAEVRIAAAGKVT 305 (530)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~ 305 (530)
...+.......++|.+..++.+.++.+|..++.+|..++..-. ........++.+++++.+. .++++..++.+++
T Consensus 253 ~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~ 332 (644)
T 2z6h_A 253 DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALR 332 (644)
T ss_dssp GGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHH
Confidence 8755444455689999999999999999999999999875311 0111234788888888753 3799999999999
Q ss_pred HHHHhhCHH------HHHhhhhHhHhHhccCCc-HHHHHHHHHHHHhhccccCH--HHHHHhHHHHHHHhhcCCC-----
Q 009632 306 KFCRILNPE------LAIQHILPCVKELSSDSS-QHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEF----- 371 (530)
Q Consensus 306 ~~~~~~~~~------~~~~~l~~~l~~~~~d~~-~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~----- 371 (530)
.++...+.. ......+|.+.+++.+.+ +.+|..++..+..++..-.. ......++|.+..++.+.+
T Consensus 333 nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~ 412 (644)
T 2z6h_A 333 HLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQR 412 (644)
T ss_dssp HHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTT
T ss_pred HHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhh
Confidence 997543321 122456788888888764 89999999999988753211 1223467788888887643
Q ss_pred -----------------hHHHHHHHHhhHHhhhhhchh-HH-HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCh-h
Q 009632 372 -----------------PDVRLNIISKLDQVNQVIGID-LL-SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV-G 431 (530)
Q Consensus 372 -----------------~~vr~~a~~~l~~l~~~~~~~-~~-~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~-~ 431 (530)
..++..++.+|..++..-... .+ ....+|.+.+++.+.+..+|..++.++..++..-.. .
T Consensus 413 ~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~ 492 (644)
T 2z6h_A 413 RTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAE 492 (644)
T ss_dssp C----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHH
T ss_pred HhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHH
Confidence 445666777776665432111 11 246789999999999999999999999998753111 1
Q ss_pred hH-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhccCC
Q 009632 432 FF-DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNP 487 (530)
Q Consensus 432 ~~-~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~ 487 (530)
.+ ....++.+..++.++++.||..|+.+|+.+...-+..+...-.+..+..++.+.
T Consensus 493 ~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~il~~~~~~~ 549 (644)
T 2z6h_A 493 AIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTE 549 (644)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcHhhhcccchHHHHHHHhCC
Confidence 11 123477889999999999999999999998765443322111244455555544
No 24
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.89 E-value=1.2e-20 Score=190.10 Aligned_cols=382 Identities=13% Similarity=0.074 Sum_probs=294.1
Q ss_pred hcchhHHHhhhcccchHHHHHHHHHHHHHHhhcCh----hhhhhhHHHHHHHHhcCC-ccchhHHHHhHhhhhcCCCChH
Q 009632 85 HVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE----SDLVDWYIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPDI 159 (530)
Q Consensus 85 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~l~~~~-~~~~r~~~~~~l~~l~~~~~~~ 159 (530)
...++.+...+.++++.+|..|+.+|..++..... ......++|.+..++.++ ++.+|..++..++.++...+..
T Consensus 86 ~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~ 165 (530)
T 1wa5_B 86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ 165 (530)
T ss_dssp -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 34566677777788899999999999999765321 123345788888888886 7889999999999988754332
Q ss_pred ----HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc---hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhh
Q 009632 160 ----LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKL 232 (530)
Q Consensus 160 ----~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~ 232 (530)
.....++.+..++.++++.+|..++.+|+.++...+. ......++|.+.+++.+.+..+|..|+.++..++..
T Consensus 166 ~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 245 (530)
T 1wa5_B 166 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG 245 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Confidence 1245678899999899999999999999999864222 223345789999999999999999999999999975
Q ss_pred cCc---hhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC---cccccchHHHHHHhcCCCcHHHHHHHHHHHHH
Q 009632 233 LEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTK 306 (530)
Q Consensus 233 ~~~---~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~ 306 (530)
-++ ......++|.+..++.+.++.+|..++.+|+.++..... ......++|.+..++.++++.+|..++.+++.
T Consensus 246 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~ 325 (530)
T 1wa5_B 246 KKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 325 (530)
T ss_dssp SSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHH
Confidence 422 234567899999999999999999999999999843111 11123678999999999999999999999999
Q ss_pred HHHhhCH---HHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCH---HHHHHhHHHHHHHhhcCCChHHHHHHHH
Q 009632 307 FCRILNP---ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNIIS 380 (530)
Q Consensus 307 ~~~~~~~---~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~ 380 (530)
++...+. ..+...++|.+..++.+.++.+|..++.+++.++..... ......++|.+..+|.++++.+|..++.
T Consensus 326 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~ 405 (530)
T 1wa5_B 326 IVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACW 405 (530)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHH
Confidence 9753221 122346788899999999999999999999999863221 1123467899999999999999999999
Q ss_pred hhHHhhhhhch--hH----HHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCh---------hhHHH-----HHHHH
Q 009632 381 KLDQVNQVIGI--DL----LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---------GFFDD-----KLGAL 440 (530)
Q Consensus 381 ~l~~l~~~~~~--~~----~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~---------~~~~~-----~~~~~ 440 (530)
+++.++...++ +. ....++|.+..++.++++.+|..++.++..+...... ..+.. ..++.
T Consensus 406 aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 485 (530)
T 1wa5_B 406 AISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEK 485 (530)
T ss_dssp HHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHH
T ss_pred HHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHH
Confidence 99999875433 22 2346889999999999999999999999999875432 11222 24777
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHH
Q 009632 441 CMQWLQDKVYSIRDAAANNLKRLAEE 466 (530)
Q Consensus 441 l~~~l~d~~~~Vr~~a~~~l~~l~~~ 466 (530)
+..+..+++..|+..|..++..++..
T Consensus 486 L~~L~~~~~~~v~~~a~~il~~~~~~ 511 (530)
T 1wa5_B 486 IFNCQQNENDKIYEKAYKIIETYFGE 511 (530)
T ss_dssp HHGGGGCSCHHHHHHHHHHHHHHSSS
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHCCc
Confidence 88888999999999999988776643
No 25
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.89 E-value=2.9e-20 Score=187.34 Aligned_cols=348 Identities=13% Similarity=0.068 Sum_probs=261.7
Q ss_pred HHHHHHHhhcCCCC-hhHHHHHHHHHHHHHhhhcc---hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc---
Q 009632 163 ELRSIYTQLCQDDM-PMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP--- 235 (530)
Q Consensus 163 ~l~~~l~~l~~d~~-~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--- 235 (530)
.++|.+.+++.+++ +.+|..|+.+|+.++..-+. .......+|.+.+++.++++.+|..|+.+|+.++..-+.
T Consensus 117 g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~ 196 (528)
T 4b8j_A 117 GVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRD 196 (528)
T ss_dssp TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHH
Confidence 45677778777776 88999999999998873221 122335788899999998899999999999998754221
Q ss_pred hhhhhccHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHhCC--cccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC
Q 009632 236 QDCVAHILPVIVNFS-QDKSWRVRYMVANQLYELCEAVGP--EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN 312 (530)
Q Consensus 236 ~~~~~~~~~~l~~~~-~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~ 312 (530)
......++|.+..++ .+.++.++..++.+|..++..... .......+|.+.+++.+++++++..++.+|..++...+
T Consensus 197 ~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~ 276 (528)
T 4b8j_A 197 LVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTN 276 (528)
T ss_dssp HHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCH
T ss_pred HHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH
Confidence 112234788888888 678899999999999999865321 12245689999999999999999999999999885432
Q ss_pred HH---HHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCH---HHHHHhHHHHHHHhhcCC-ChHHHHHHHHhhHHh
Q 009632 313 PE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDE-FPDVRLNIISKLDQV 385 (530)
Q Consensus 313 ~~---~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l 385 (530)
.. .....++|.+..++.+.++.++..++.+++.++..... ......++|.+..+|.++ ++.+|..|+.+++++
T Consensus 277 ~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl 356 (528)
T 4b8j_A 277 DKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNI 356 (528)
T ss_dssp HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 21 22346788999999999999999999999999864321 112245789999999998 999999999999999
Q ss_pred hhhhch---hHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhH----HHHHHHHHHHHhcCCcHHHHHHHHH
Q 009632 386 NQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF----DDKLGALCMQWLQDKVYSIRDAAAN 458 (530)
Q Consensus 386 ~~~~~~---~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~----~~~~~~~l~~~l~d~~~~Vr~~a~~ 458 (530)
+..-.. ..+...++|.|..++.+.++.+|..++.+++.++...+++.. ...+++.+..++.++++.++..++.
T Consensus 357 ~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~ 436 (528)
T 4b8j_A 357 TAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLE 436 (528)
T ss_dssp HTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHH
T ss_pred HCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHH
Confidence 863211 112346789999999999999999999999999876443332 2357889999999999999999999
Q ss_pred HHHHHHHHhChh--------------HHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcChHH
Q 009632 459 NLKRLAEEFGPE--------------WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI 510 (530)
Q Consensus 459 ~l~~l~~~~~~~--------------~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~~~ 510 (530)
+|+.++...+.. ......++.+..+.++++.+++..|..++..+...-..++
T Consensus 437 ~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~e~~~~ 502 (528)
T 4b8j_A 437 GLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDEEDDT 502 (528)
T ss_dssp HHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccccc
Confidence 999998765321 1113446778888899999999999999999876544443
No 26
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.89 E-value=1.3e-20 Score=196.86 Aligned_cols=475 Identities=13% Similarity=0.053 Sum_probs=327.0
Q ss_pred ccccc-ccCCchHHHHHHHHHHhcccccCCCccchhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhh-h--hhhH
Q 009632 51 PFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESD-L--VDWY 126 (530)
Q Consensus 51 ~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~-~--~~~l 126 (530)
|.+.+ +.++++++|..++..+..... .......+|.|..++.+++..||+.|+.+|..++....... + ...+
T Consensus 118 ~~lv~~L~~~~~~~r~~a~~~l~~~~~----~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~ 193 (780)
T 2z6g_A 118 PTNVQRLAEPSQMLKHAVVNLINYQDD----AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQM 193 (780)
T ss_dssp --------CCSCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHH
T ss_pred HHHHHHhcCccHHHHHHHHHHHHhhhH----HHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccCh
Confidence 34434 667788999988888764311 23335567777778888899999999999999987543211 1 1134
Q ss_pred HHHHHHHhc-CCccchhHHHHhHhhhhcCCCChH---HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc--h-hh
Q 009632 127 IPLVKRLAA-GEWFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP--A-HL 199 (530)
Q Consensus 127 ~~~l~~l~~-~~~~~~r~~~~~~l~~l~~~~~~~---~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~--~-~~ 199 (530)
++.+..++. +++..+|..++..+..+...-... .....++.+..++.++++.+|..++.+|.+++..-.. . ..
T Consensus 194 i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~ 273 (780)
T 2z6g_A 194 VSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVR 273 (780)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHH
Confidence 555544444 557889999999988876542111 2235788999999999999999999999999976433 1 22
Q ss_pred HHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc---hhhhhccHHHHHHhcCCCC-HHHHHHHHHHHHHHHHHhC--
Q 009632 200 KTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP---QDCVAHILPVIVNFSQDKS-WRVRYMVANQLYELCEAVG-- 273 (530)
Q Consensus 200 ~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~~~d~~-~~vr~~~~~~l~~l~~~~~-- 273 (530)
....+|.+.+++.+++..++..+..++..++..... .......++.+..++++.+ ...+..++.++..++..-.
T Consensus 274 ~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~ 353 (780)
T 2z6g_A 274 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK 353 (780)
T ss_dssp HTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHH
T ss_pred HcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHH
Confidence 356899999999999999999999988877742111 1122346777777777654 4455667777777764211
Q ss_pred CcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCH-
Q 009632 274 PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK- 352 (530)
Q Consensus 274 ~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~- 352 (530)
........++.+..++.+.++.++..++.++..++...........++|.+.+++.+.++.+|..++.++..++..-..
T Consensus 354 ~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~ 433 (780)
T 2z6g_A 354 PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN 433 (780)
T ss_dssp HHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHH
T ss_pred HHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 0112345789999999999999999999999999875533222356788888889999999999999999999764221
Q ss_pred --HHHHHhHHHHHHHhhcCC-C-hHHHHHHHHhhHHhhhhhchh------HHHhhHHHHHHHHhcCCC-hHHHHHHHHHH
Q 009632 353 --DATIEQLLPIFLSLLKDE-F-PDVRLNIISKLDQVNQVIGID------LLSQSLLPAIVELAEDRH-WRVRLAIIEYI 421 (530)
Q Consensus 353 --~~~~~~l~~~l~~~l~d~-~-~~vr~~a~~~l~~l~~~~~~~------~~~~~l~~~l~~~~~~~~-~~~R~~~~~~l 421 (530)
.......++.+..+|.+. + ..+|..++.+|++++...+.. ......+|.|.+++.+++ +.+|..++.++
T Consensus 434 ~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL 513 (780)
T 2z6g_A 434 KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLI 513 (780)
T ss_dssp HHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHH
Confidence 111234678888888763 3 489999999999987533221 112456888999988876 69999999999
Q ss_pred HHHHhhhChh--hHHHHHHHHHHHHhcCCc----------------------HHHHHHHHHHHHHHHHHhCh--hHHhhh
Q 009632 422 PLLASQLGVG--FFDDKLGALCMQWLQDKV----------------------YSIRDAAANNLKRLAEEFGP--EWAMQH 475 (530)
Q Consensus 422 ~~l~~~~~~~--~~~~~~~~~l~~~l~d~~----------------------~~Vr~~a~~~l~~l~~~~~~--~~~~~~ 475 (530)
+.++..-... .....++|.+..++.+.. .+++..++.+|+.++..-.. ......
T Consensus 514 ~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~ 593 (780)
T 2z6g_A 514 RNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLN 593 (780)
T ss_dssp HHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTC
T ss_pred HHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCC
Confidence 9998522111 112346777877776543 34677788888877532111 112356
Q ss_pred hHHHHHhhccCCChHHHHHHHHHHHHHhhhcCh-H-HHHhhHHHHHHhhccCCCCC
Q 009632 476 ITPQVLEMINNPHYLYRMTILRAISLLAPVMGS-E-ITCSRLLPVVINASKDRYLN 529 (530)
Q Consensus 476 i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~-~-~~~~~~~p~l~~~l~D~~~~ 529 (530)
.+|.|..++.+++..+|..++.++.++...-.. + ......++.|..+++|+.+.
T Consensus 594 ~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~~~ 649 (780)
T 2z6g_A 594 TIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEG 649 (780)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGGCSCHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHcCCCHH
Confidence 799999999999999999999999998743211 1 12333577888888887653
No 27
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.87 E-value=2.3e-20 Score=188.46 Aligned_cols=455 Identities=13% Similarity=0.044 Sum_probs=316.3
Q ss_pred CcHHHHHHHhcChhHHHHHHHhhcHHHHHHhhChH-hhh--hcccccccc-cc-CCchHHHHHHHHHHhcccccCCCcc-
Q 009632 9 YPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEE-RTR--KELIPFLSE-NN-DDDDEVLLAMAEELGVFIPYVGGVE- 82 (530)
Q Consensus 9 ~~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~-~~~--~~l~~~l~~-~~-d~~~~vr~~~~~~l~~~~~~~~~~~- 82 (530)
-.+..|+..++++++..|..|+..|..++..-... ... ...++.+.. +. ++++++|..++.+|.+++..-....
T Consensus 17 ~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~ 96 (529)
T 1jdh_A 17 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA 96 (529)
T ss_dssp CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHH
Confidence 45788899999999999999999999987543211 111 134555555 43 3588999999999998865311000
Q ss_pred -chhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChh--h-hhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCCh
Q 009632 83 -HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES--D-LVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD 158 (530)
Q Consensus 83 -~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~--~-~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~ 158 (530)
.....+|.|..++.++++.+|..|+.+|..++..-+.. . .....+|.+..++.++++.+|..++..+..+...-.+
T Consensus 97 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~ 176 (529)
T 1jdh_A 97 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE 176 (529)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHH
Confidence 12346778888888899999999999999998864331 1 2345788888899888888998888888877653221
Q ss_pred H----HHHHHHHHHHhhcCCCCh-hHHHHHHHHHHHHHhhhcc--hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhh
Q 009632 159 I----LKTELRSIYTQLCQDDMP-MVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGK 231 (530)
Q Consensus 159 ~----~~~~l~~~l~~l~~d~~~-~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~ 231 (530)
. .....++.+..++.+.++ .++..++.++..++..-.. .......++.+.+++.++++.++..++.++..++.
T Consensus 177 ~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~ 256 (529)
T 1jdh_A 177 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 256 (529)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhc
Confidence 1 122356667776665544 4566677777777642211 12234578999999999999999999999999998
Q ss_pred hcCchhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC---CcccccchHHHHHHhcCC--CcHHHHHHHHHHHHH
Q 009632 232 LLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLLRD--NEAEVRIAAAGKVTK 306 (530)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~ 306 (530)
..+.......++|.+.+++.+.++.+|..++.+|++++..-. ........+|.+.+++.+ ++++++..++.+++.
T Consensus 257 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~n 336 (529)
T 1jdh_A 257 AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH 336 (529)
T ss_dssp TCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 765544455689999999999999999999999999865210 011123467888888864 347999999999999
Q ss_pred HHHhhCH------HHHHhhhhHhHhHhccCCc-HHHHHHHHHHHHhhccccCH--HHHHHhHHHHHHHhhcCCChHHHHH
Q 009632 307 FCRILNP------ELAIQHILPCVKELSSDSS-QHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEFPDVRLN 377 (530)
Q Consensus 307 ~~~~~~~------~~~~~~l~~~l~~~~~d~~-~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~ 377 (530)
++...+. .......+|.+.+++.+++ +.+|..++..++.++..-.. ......++|.+..+++++++.+|..
T Consensus 337 l~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~ 416 (529)
T 1jdh_A 337 LTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRR 416 (529)
T ss_dssp HTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC--
T ss_pred HHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHH
Confidence 8754322 1222356788888888765 79999999999988753221 1223467899999998887788776
Q ss_pred HHHhhHH----------------------hhhhhch--hHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhC--hh
Q 009632 378 IISKLDQ----------------------VNQVIGI--DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--VG 431 (530)
Q Consensus 378 a~~~l~~----------------------l~~~~~~--~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~--~~ 431 (530)
++.++.+ ++..... .......++.+..++.+++..+|..+..++..++..-. ..
T Consensus 417 a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~ 496 (529)
T 1jdh_A 417 TSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEA 496 (529)
T ss_dssp ---------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHH
Confidence 6554443 2221100 01124567899999999999999999999998864210 11
Q ss_pred hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Q 009632 432 FFDDKLGALCMQWLQDKVYSIRDAAANNLKRL 463 (530)
Q Consensus 432 ~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l 463 (530)
......++.+..++.++++.||..|..++..+
T Consensus 497 i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 497 IEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 11234578899999999999999999998765
No 28
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.87 E-value=1.5e-19 Score=182.23 Aligned_cols=380 Identities=13% Similarity=0.074 Sum_probs=290.1
Q ss_pred cchhHHHhhhcccchHHHHHHHHHHHHHHhhcC-h---hhhhhhHHHHHHHHhcCCc-cchhHHHHhHhhhhcCCCChH-
Q 009632 86 VLLPPLETLCTVEETCVRDKAVESLCRIGSQMR-E---SDLVDWYIPLVKRLAAGEW-FTARVSACGLFHIAYPSAPDI- 159 (530)
Q Consensus 86 ~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~-~---~~~~~~l~~~l~~l~~~~~-~~~r~~~~~~l~~l~~~~~~~- 159 (530)
.-+|.+...+.++++.+|..|+.+|..++..-. + ......++|.+..++.+++ +.+|..++..++.++....+.
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 346667777778889999999999999977544 1 2233457788888887765 889999999999988754332
Q ss_pred ---HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc---hhhHHHHHHHHHHhh-cCCchhHHHHHHHHHHHHhhh
Q 009632 160 ---LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLT-QDDQDSVRLLAVEGCAALGKL 232 (530)
Q Consensus 160 ---~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~-~d~~~~vr~~a~~~l~~l~~~ 232 (530)
.....++.+..++.++++.+|..++.+|+.++...+. .......++.+.+++ .+.+..++..++.++..++..
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 2235889999999999999999999999999864322 112234678888888 677889999999999999976
Q ss_pred cCc--hhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC---cccccchHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 009632 233 LEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKF 307 (530)
Q Consensus 233 ~~~--~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~ 307 (530)
.+. ......++|.+..++.+.++.++..++.+|+.++..... ......++|.+..++.++++.++..|+.+|+.+
T Consensus 234 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl 313 (528)
T 4b8j_A 234 KPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNI 313 (528)
T ss_dssp SSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHH
Confidence 422 234567899999999999999999999999998743211 111235789999999999999999999999999
Q ss_pred HHhhCHH---HHHhhhhHhHhHhccCC-cHHHHHHHHHHHHhhccccCH---HHHHHhHHHHHHHhhcCCChHHHHHHHH
Q 009632 308 CRILNPE---LAIQHILPCVKELSSDS-SQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNIIS 380 (530)
Q Consensus 308 ~~~~~~~---~~~~~l~~~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~ 380 (530)
+...+.. .+...++|.+..++.+. ++.+|..++.+++.++..... ......++|.+..++.+.++.+|..|+.
T Consensus 314 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~ 393 (528)
T 4b8j_A 314 VTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAW 393 (528)
T ss_dssp TTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHH
Confidence 8632211 22245688888888888 999999999999999763211 1123467899999999999999999999
Q ss_pred hhHHhhhhhchhHH----HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChh---------hHH-----HHHHHHHH
Q 009632 381 KLDQVNQVIGIDLL----SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---------FFD-----DKLGALCM 442 (530)
Q Consensus 381 ~l~~l~~~~~~~~~----~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~---------~~~-----~~~~~~l~ 442 (530)
++++++..-+++.. ...+++.|..++.++++.++..++.++..+....... .+. ...++.+.
T Consensus 394 aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~ 473 (528)
T 4b8j_A 394 AISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIE 473 (528)
T ss_dssp HHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHH
Confidence 99999876333221 2467899999999999999999999999998754321 122 12456778
Q ss_pred HHhcCCcHHHHHHHHHHHHHHHH
Q 009632 443 QWLQDKVYSIRDAAANNLKRLAE 465 (530)
Q Consensus 443 ~~l~d~~~~Vr~~a~~~l~~l~~ 465 (530)
.+..+++..|+..|..++..++.
T Consensus 474 ~L~~~~~~~v~~~a~~il~~~~~ 496 (528)
T 4b8j_A 474 NLQSHDNNEIYEKAVKILEAYWM 496 (528)
T ss_dssp HGGGCSSHHHHHHHHHHHHHHCC
T ss_pred HHHcCCCHHHHHHHHHHHHHHCC
Confidence 88889999999999999877654
No 29
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.85 E-value=3.9e-19 Score=180.99 Aligned_cols=448 Identities=10% Similarity=0.028 Sum_probs=295.2
Q ss_pred ccCCchHHHHHHHHHHhcccccCCCccchhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhc
Q 009632 56 NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAA 135 (530)
Q Consensus 56 ~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~ 135 (530)
+.+++.+.|+.+...+..+++ ..++....+...|..-++|+++.+|..|+.+++.+.. ....+.+.+.+..++.
T Consensus 79 ~~s~~~~~Krl~Yl~~~~~~~--~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~----~~~~~~l~~~l~~~L~ 152 (618)
T 1w63_A 79 IASQKFTDKRIGYLGAMLLLD--ERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGS----SEMCRDLAGEVEKLLK 152 (618)
T ss_dssp HHSSSHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCC----HHHHHHHHHHHHHHHH
T ss_pred HcCCchHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHc
Confidence 456778888888887777765 2233334556667777789999999999999999863 3445667888888899
Q ss_pred CCccchhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc-hhhHHHHHHHHHHhhcC-
Q 009632 136 GEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP-AHLKTDIMSIFEDLTQD- 213 (530)
Q Consensus 136 ~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~~~d- 213 (530)
++++.+|..|+.+++.++...+ +..+.+++.+..++.|+++.|+.+|+.++..++..-+. ......++|.+.+.+.+
T Consensus 153 ~~~~~VRk~A~~al~~l~~~~p-~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~ 231 (618)
T 1w63_A 153 TSNSYLRKKAALCAVHVIRKVP-ELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNL 231 (618)
T ss_dssp SCCHHHHHHHHHHHHHHHHHCG-GGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCh-HHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988887543 44456788888899999999999999999998764322 11122344555544432
Q ss_pred --------------CchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHhC
Q 009632 214 --------------DQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQ------DKSWRVRYMVANQLYELCEAVG 273 (530)
Q Consensus 214 --------------~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~------d~~~~vr~~~~~~l~~l~~~~~ 273 (530)
.++-.+...+++++.++..-+ .....+.+.+..++. +.+..|...+++++..+..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~--~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~--- 306 (618)
T 1w63_A 232 IMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDD--DSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKS--- 306 (618)
T ss_dssp HHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCH--HHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC---
T ss_pred HcCCCCccccccCCCCChHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCC---
Confidence 366778888888888876422 123345555555532 2345677777777765421
Q ss_pred CcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHH
Q 009632 274 PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD 353 (530)
Q Consensus 274 ~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~ 353 (530)
.........+.+..++.++++++|..|+.++..++...+ + ......+.+...+.|++..+|..+++.+..++..-.-
T Consensus 307 ~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p-~-~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv- 383 (618)
T 1w63_A 307 ESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDH-N-AVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNI- 383 (618)
T ss_dssp CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHH-H-HHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSST-
T ss_pred CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCH-H-HHHHHHHHHHHHccCCChhHHHHHHHHHHHHcccccH-
Confidence 111122356777788888999999999999999987532 2 2244455666777899999999999999999875442
Q ss_pred HHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhH
Q 009632 354 ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF 433 (530)
Q Consensus 354 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~ 433 (530)
..+++.+...+.+.+.++|..++.+++.++..+.++ ....++.+.+++.+....++..++..+..+...... .
T Consensus 384 ---~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~--~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~--l 456 (618)
T 1w63_A 384 ---RGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPS--KRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVE--M 456 (618)
T ss_dssp ---HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCC--HHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCS--T
T ss_pred ---HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCcc--HHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChh--H
Confidence 344566666777788999999999999999876433 134566666666665555555566666655543321 1
Q ss_pred HHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHHHHhChh---------HHhhhhHHHHHhhcc--CCChHHHHHHHHHHH
Q 009632 434 DDKLGALCMQWLQD--KVYSIRDAAANNLKRLAEEFGPE---------WAMQHITPQVLEMIN--NPHYLYRMTILRAIS 500 (530)
Q Consensus 434 ~~~~~~~l~~~l~d--~~~~Vr~~a~~~l~~l~~~~~~~---------~~~~~i~~~l~~~~~--d~~~~vr~~a~~~l~ 500 (530)
....++.+...+.+ ....+...+++++|+....+... .....+++.+.++++ ..+..+|..++.++.
T Consensus 457 ~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~ 536 (618)
T 1w63_A 457 HAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIM 536 (618)
T ss_dssp HHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 23344444444442 12334446788888887654210 011234444444443 457778888888888
Q ss_pred HHhhhcChHHHHhhHHHHHHhhccCCC
Q 009632 501 LLAPVMGSEITCSRLLPVVINASKDRY 527 (530)
Q Consensus 501 ~i~~~~~~~~~~~~~~p~l~~~l~D~~ 527 (530)
++....+.. .+.+...+..+..|..
T Consensus 537 Kl~~~~~~~--~~~l~~~L~~~~~~~d 561 (618)
T 1w63_A 537 KLSTRFTCT--VNRIKKVVSIYGSSID 561 (618)
T ss_dssp HHHTTCSSC--HHHHHHHHHHHTTCSC
T ss_pred HHHHhCcch--HHHHHHHHHHhcCCCC
Confidence 877665432 3444555555555543
No 30
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.85 E-value=4.4e-19 Score=180.59 Aligned_cols=476 Identities=11% Similarity=0.050 Sum_probs=329.3
Q ss_pred CCCCcCcHHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhcccccccc-ccCCchHHHHHHHHHHhcccccCCCcc
Q 009632 4 VDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVE 82 (530)
Q Consensus 4 ~~~~~~~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~~~ 82 (530)
|.+.-+.+...++.+.+++...|+.+.-++...+.. .++ ..-..++.+.. +.++++.+|..|..+|+++.. ++
T Consensus 65 G~d~~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~-~~e-~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~----~~ 138 (618)
T 1w63_A 65 GYPAHFGQLECLKLIASQKFTDKRIGYLGAMLLLDE-RQD-VHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGS----SE 138 (618)
T ss_dssp TCCCGGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCC-CHH-HHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCC----HH
T ss_pred CCCCcchHHHHHHHHcCCchHHHHHHHHHHHHHhCC-CcH-HHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC----HH
Confidence 444444566777888888888888777666655432 122 22234455555 889999999999999999853 56
Q ss_pred chhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCCh--HH
Q 009632 83 HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD--IL 160 (530)
Q Consensus 83 ~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~--~~ 160 (530)
....+.+.+..++.|+++.||..|+.++..+....++ .. ..+.+.+..++.|+++.++..|+.++..+...-++ ..
T Consensus 139 ~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~-~v-~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~ 216 (618)
T 1w63_A 139 MCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPE-LM-EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAH 216 (618)
T ss_dssp HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGG-GG-GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChH-HH-HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHH
Confidence 6778889999999999999999999999999986543 33 34667778888899999999999999998875332 12
Q ss_pred HHHHHHHHHhhcC---------------CCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhc------CCchhHH
Q 009632 161 KTELRSIYTQLCQ---------------DDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ------DDQDSVR 219 (530)
Q Consensus 161 ~~~l~~~l~~l~~---------------d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~------d~~~~vr 219 (530)
...++|.+...+. .+++..+..+++.++.+...-+ ...+.+.+.+.+++. +.+..|.
T Consensus 217 ~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~--~~~~~~~~~L~~l~~~~~~~~~~~~aV~ 294 (618)
T 1w63_A 217 FRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDD--DSSEAMNDILAQVATNTETSKNVGNAIL 294 (618)
T ss_dssp HHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCH--HHHHTTHHHHHHHHHTSCCSSTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHHhccccccchHHHHH
Confidence 2233343333222 3477788888888888765321 122334455555442 3345688
Q ss_pred HHHHHHHHHHhhhcCchhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHH
Q 009632 220 LLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIA 299 (530)
Q Consensus 220 ~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~ 299 (530)
..|++++..+.. .........+.+..++.++++.+|..++.+|+.++...+.- .....+.++.++.|++..||..
T Consensus 295 ~ea~~~i~~l~~---~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~--~~~~~~~i~~~l~d~d~~Ir~~ 369 (618)
T 1w63_A 295 YETVLTIMDIKS---ESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNA--VQRHRSTIVDCLKDLDVSIKRR 369 (618)
T ss_dssp HHHHHHHHHSCC---CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHH--HGGGHHHHHHGGGSSCHHHHHH
T ss_pred HHHHHHHHhcCC---CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHH--HHHHHHHHHHHccCCChhHHHH
Confidence 888887776532 12223346677778888888899999999999998763321 2334567888899999999999
Q ss_pred HHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHH
Q 009632 300 AAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNII 379 (530)
Q Consensus 300 a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~ 379 (530)
++..+..++..-..+ .+++.+...+.+.+..+|..++..++.++..+.+. ....++.++.++++....++..++
T Consensus 370 alelL~~l~~~~nv~----~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~--~~~~v~~ll~lL~~~~~~v~~~~~ 443 (618)
T 1w63_A 370 AMELSFALVNGNNIR----GMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPS--KRWHIDTIMRVLTTAGSYVRDDAV 443 (618)
T ss_dssp HHHHHHHHCCSSSTH----HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCC--HHHHHHHHHHHHHHTGGGSCSSHH
T ss_pred HHHHHHHHcccccHH----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCcc--HHHHHHHHHHHHHhccchhHHHHH
Confidence 999999887643333 34455555556678899999999999999876432 234467777888887777777777
Q ss_pred HhhHHhhhhhchhHHHhhHHHHHHHHhcC--CChHHHHHHHHHHHHHHhhhChh---------hHHHHHHHHHHHHhc--
Q 009632 380 SKLDQVNQVIGIDLLSQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLGVG---------FFDDKLGALCMQWLQ-- 446 (530)
Q Consensus 380 ~~l~~l~~~~~~~~~~~~l~~~l~~~~~~--~~~~~R~~~~~~l~~l~~~~~~~---------~~~~~~~~~l~~~l~-- 446 (530)
..+..+..... ......++.+.+.+.+ .+...+..+++++|..+..+... .....+++.+..++.
T Consensus 444 ~~l~~ii~~~p--~l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 521 (618)
T 1w63_A 444 PNLIQLITNSV--EMHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISN 521 (618)
T ss_dssp HHHHHHHHHSC--STHHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHST
T ss_pred HHHHHHHhcCh--hHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhcc
Confidence 77777765432 2234566666666553 23445557899999998765321 112345566666554
Q ss_pred CCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhh
Q 009632 447 DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAP 504 (530)
Q Consensus 447 d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~ 504 (530)
...+.||..++.++..++...+.. .+.+...+....+|.|.++|..|...+.-+..
T Consensus 522 ~~~~~vr~~~lta~~Kl~~~~~~~--~~~l~~~L~~~~~~~d~evrdRA~~y~~ll~~ 577 (618)
T 1w63_A 522 MSTSVTRGYALTAIMKLSTRFTCT--VNRIKKVVSIYGSSIDVELQQRAVEYNALFKK 577 (618)
T ss_dssp TCCHHHHHHHHHHHHHHHTTCSSC--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHhCcch--HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC
Confidence 567899999999999988766422 34455555566778999999999998887654
No 31
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.81 E-value=5.1e-17 Score=162.01 Aligned_cols=341 Identities=13% Similarity=0.095 Sum_probs=247.4
Q ss_pred HHHHHHhhcC-CCChhHHHHHHHHHHHHHhhhcc---hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc---h
Q 009632 164 LRSIYTQLCQ-DDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP---Q 236 (530)
Q Consensus 164 l~~~l~~l~~-d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~ 236 (530)
++|.|.+++. +.++.++..|+.+|.+++..-+. .......+|.|.+++.+++..+|..|+.+|+.++...+. .
T Consensus 101 ~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~ 180 (510)
T 3ul1_B 101 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDL 180 (510)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 5677777775 44577888888888888753222 122335788888888888888888888888888754221 1
Q ss_pred hhhhccHHHHHHhcCCCC-----HHHHHHHHHHHHHHHHHhCCc---ccccchHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 009632 237 DCVAHILPVIVNFSQDKS-----WRVRYMVANQLYELCEAVGPE---PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFC 308 (530)
Q Consensus 237 ~~~~~~~~~l~~~~~d~~-----~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~ 308 (530)
......++.+..++.+.+ ..+.+.++.++..++..-... .....++|.+.+++.+++++++..++.++..++
T Consensus 181 v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~ 260 (510)
T 3ul1_B 181 VIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLT 260 (510)
T ss_dssp HHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 123446777777776543 345667777777776532211 123468899999999999999999999999887
Q ss_pred HhhCHH---HHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCH---HHHHHhHHHHHHHhhcCCChHHHHHHHHhh
Q 009632 309 RILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKL 382 (530)
Q Consensus 309 ~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l 382 (530)
...... .....++|.+..++.+.++.++..++.+++.++..-.. .......++.+..++.+++..+|..++.++
T Consensus 261 ~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL 340 (510)
T 3ul1_B 261 DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTM 340 (510)
T ss_dssp SSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHH
T ss_pred hchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHH
Confidence 532211 12345788888999999999999999999988753321 112335678888899999999999999999
Q ss_pred HHhhhhhchh---HHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhH----HHHHHHHHHHHhcCCcHHHHHH
Q 009632 383 DQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF----DDKLGALCMQWLQDKVYSIRDA 455 (530)
Q Consensus 383 ~~l~~~~~~~---~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~----~~~~~~~l~~~l~d~~~~Vr~~ 455 (530)
.+++..-... .....++|.+..++.+.++.+|..++.++.+++.....+.. ....+|.+..++.++++.++..
T Consensus 341 ~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~ 420 (510)
T 3ul1_B 341 SNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 420 (510)
T ss_dssp HHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHH
T ss_pred HHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHH
Confidence 9987532211 12346889999999999999999999999999876554432 2346889999999999999999
Q ss_pred HHHHHHHHHHHh---Chh-HH-----hhhhHHHHHhhccCCChHHHHHHHHHHHHHhh
Q 009632 456 AANNLKRLAEEF---GPE-WA-----MQHITPQVLEMINNPHYLYRMTILRAISLLAP 504 (530)
Q Consensus 456 a~~~l~~l~~~~---~~~-~~-----~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~ 504 (530)
++.+|..|.+.. +.. .. ....+..+..+..++|.+++..|...+.+...
T Consensus 421 ~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~ 478 (510)
T 3ul1_B 421 ILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFS 478 (510)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 999999988653 211 11 12356778888889999999999999988764
No 32
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.80 E-value=9.4e-17 Score=161.07 Aligned_cols=342 Identities=13% Similarity=0.099 Sum_probs=249.9
Q ss_pred HHHHHHHhhcC-CCChhHHHHHHHHHHHHHhhhcc---hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc---
Q 009632 163 ELRSIYTQLCQ-DDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP--- 235 (530)
Q Consensus 163 ~l~~~l~~l~~-d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--- 235 (530)
.++|.|.+++. +.++.++..|+.+|.+++..-.. .......+|.+.+++.+++..+|..|+.+|+.++..-+.
T Consensus 119 G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~ 198 (529)
T 3tpo_A 119 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRD 198 (529)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHH
Confidence 35677777664 45678888888888888764322 223345788888888888888888888888888754221
Q ss_pred hhhhhccHHHHHHhcCCCC-----HHHHHHHHHHHHHHHHHhCCc---ccccchHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 009632 236 QDCVAHILPVIVNFSQDKS-----WRVRYMVANQLYELCEAVGPE---PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKF 307 (530)
Q Consensus 236 ~~~~~~~~~~l~~~~~d~~-----~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~ 307 (530)
.......++.+..++.+.+ ..+.+.++.++..++..-... .....++|.+.+++.+++++++..++.+|..+
T Consensus 199 ~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l 278 (529)
T 3tpo_A 199 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYL 278 (529)
T ss_dssp HHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 1123446777777776543 345667777777776532221 12346889999999999999999999999988
Q ss_pred HHhhCHH---HHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCH---HHHHHhHHHHHHHhhcCCChHHHHHHHHh
Q 009632 308 CRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNIISK 381 (530)
Q Consensus 308 ~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~ 381 (530)
+...... .....++|.+..++.+.++.++..++.+++.++..-.. .......++.+..++.+++..+|..++.+
T Consensus 279 ~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~a 358 (529)
T 3tpo_A 279 TDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWT 358 (529)
T ss_dssp HSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHH
T ss_pred hhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHH
Confidence 7643221 22346788889999999999999999999998753221 11234567889999999999999999999
Q ss_pred hHHhhhhhch---hHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhH----HHHHHHHHHHHhcCCcHHHHH
Q 009632 382 LDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF----DDKLGALCMQWLQDKVYSIRD 454 (530)
Q Consensus 382 l~~l~~~~~~---~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~----~~~~~~~l~~~l~d~~~~Vr~ 454 (530)
+++++..-.. ......++|.+..++.+.++.+|..|+.+++.++.....+.. ....+|.+..++..+++.++.
T Consensus 359 L~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~ 438 (529)
T 3tpo_A 359 MSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 438 (529)
T ss_dssp HHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHH
T ss_pred HHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHH
Confidence 9998753221 112346899999999999999999999999999876554432 234688999999999999999
Q ss_pred HHHHHHHHHHHHh---Chh-HH-----hhhhHHHHHhhccCCChHHHHHHHHHHHHHhh
Q 009632 455 AAANNLKRLAEEF---GPE-WA-----MQHITPQVLEMINNPHYLYRMTILRAISLLAP 504 (530)
Q Consensus 455 ~a~~~l~~l~~~~---~~~-~~-----~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~ 504 (530)
.++.+|..|.+.. +.. .. ....+..+..+..++|.+++..|...+.+...
T Consensus 439 ~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~ 497 (529)
T 3tpo_A 439 VILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFS 497 (529)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 9999999987653 211 11 12346777788889999999999999987753
No 33
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.80 E-value=1.1e-16 Score=162.26 Aligned_cols=473 Identities=11% Similarity=0.046 Sum_probs=289.0
Q ss_pred HHHHHHhcC---hhHHHHHHHhhcHHHHHHhhChHhhhhcccccccc-ccCCchHHHHHHHHHHhcccccCCCccchhcc
Q 009632 12 AVLIDELKN---DDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVL 87 (530)
Q Consensus 12 ~~l~~~l~~---~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l 87 (530)
..+.+.+++ .+...|..++.-+--+ ..+|.+ .. .+.+.+.. +.+++.+.|+.+...+..+++ +.++....+
T Consensus 38 ~~ir~~~~~~~~~~~~~k~~~l~Kli~l-~~~G~d-~s-~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~--~~~e~~~L~ 112 (621)
T 2vgl_A 38 ANIRSKFKGDKALDGYSKKKYVCKLLFI-FLLGHD-ID-FGHMEAVNLLSSNRYTEKQIGYLFISVLVN--SNSELIRLI 112 (621)
T ss_dssp HHHHHHHHSSSCCCHHHHHHHHHHHHHH-HHHSCC-CC-SCHHHHHHGGGCSCHHHHHHHHHHHHHSCC--CCHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHH-HHcCCC-Cc-hhHHHHHHHhcCCCHHHHHHHHHHHHHHcc--CCcHHHHHH
Confidence 344444543 2555555555544433 223432 11 22222222 567888999999999988876 334444455
Q ss_pred hhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHh--cCCccchhHHHHhHhhhhcCCCChHHHH--H
Q 009632 88 LPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLA--AGEWFTARVSACGLFHIAYPSAPDILKT--E 163 (530)
Q Consensus 88 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~--~~~~~~~r~~~~~~l~~l~~~~~~~~~~--~ 163 (530)
...+..-++|+++.+|-.|+.+++.+.. ....+.+.|.+..++ .|.++.+|..|+.++..++... ++..+ .
T Consensus 113 iN~l~kDl~~~n~~ir~lALr~L~~i~~----~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~-p~~~~~~~ 187 (621)
T 2vgl_A 113 NNAIKNDLASRNPTFMGLALHCIANVGS----REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTS-PDLVPMGD 187 (621)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHCC----HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHC-GGGCCCCS
T ss_pred HHHHHHhcCCCCHHHHHHHHHHhhccCC----HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhC-hhhcCchh
Confidence 6667777789999999999999999843 345556778888887 8889999999999988887743 34333 6
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcch--hhHHHHHHHHHHhhcCC-------------chhHHHHHHHHHHH
Q 009632 164 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQDD-------------QDSVRLLAVEGCAA 228 (530)
Q Consensus 164 l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~-------------~~~vr~~a~~~l~~ 228 (530)
+.+.+.++++|+++.|+.+|+.++..++..-+.. ...+.++..+.+++.+. ++-.+...++.+..
T Consensus 188 ~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~ 267 (621)
T 2vgl_A 188 WTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQC 267 (621)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGG
T ss_pred HHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHH
Confidence 7888889999999999999999999988754331 23344555555555432 35577777777766
Q ss_pred HhhhcCchhhhhccHHHHHHhc---CC-C--------C--HHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcH
Q 009632 229 LGKLLEPQDCVAHILPVIVNFS---QD-K--------S--WRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEA 294 (530)
Q Consensus 229 l~~~~~~~~~~~~~~~~l~~~~---~d-~--------~--~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~ 294 (530)
++..-.+ .....+.+.+..++ .+ + + ..|...++.++..+. ............+..++.++++
T Consensus 268 ~~~~~d~-~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~---~~~~~~~~~~~~L~~~L~~~~~ 343 (621)
T 2vgl_A 268 YPPPEDP-AVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD---SEPNLLVRACNQLGQFLQHRET 343 (621)
T ss_dssp SSSCSSH-HHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHSSCSCH
T ss_pred hCCCCCH-HHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhcCCCc
Confidence 5532111 22222333333322 11 1 1 145555555554442 2222234567778888888899
Q ss_pred HHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhcc-CCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChH
Q 009632 295 EVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS-DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPD 373 (530)
Q Consensus 295 ~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~ 373 (530)
++|..++.++..++...+.........+.+...+. |++..+|..+++.+..++.. .-...++..+...+.+.+.+
T Consensus 344 niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~----~Nv~~Iv~eL~~yl~~~d~~ 419 (621)
T 2vgl_A 344 NLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDR----SNAQQIVAEMLSYLETADYS 419 (621)
T ss_dssp HHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH----HHHHHHHHHHHHHHHHCCHH
T ss_pred chHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh----hhHHHHHHHHHHHHHhcCHH
Confidence 99999999999998765422233455566666667 89999999999998888743 23456777777788888999
Q ss_pred HHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcH--H
Q 009632 374 VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVY--S 451 (530)
Q Consensus 374 vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~--~ 451 (530)
.|..++.+++.++..+.++. ...+..+.+++.+....+...++..+..+..... ......+..+...+.|+.. .
T Consensus 420 ~~~~~v~~I~~la~k~~~~~--~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~--~~~~~~~~~l~~~l~~~~~~~~ 495 (621)
T 2vgl_A 420 IREEIVLKVAILAEKYAVDY--TWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRD--DVQGYAAKTVFEALQAPACHEN 495 (621)
T ss_dssp HHHHHHHHHHHHHHHHCSST--HHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGC--SCHHHHHHHHHHHHTSSSCCHH
T ss_pred HHHHHHHHHHHHHHhcCCcH--HHHHHHHHHHHHhhcccchHHHHHHHHHHHhCCh--hHHHHHHHHHHHHHcCccchHH
Confidence 99999999999887765321 2344444444443332334444444444433222 1222333444455555432 3
Q ss_pred HHHHHHHHHHHHHHHhChhH--HhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhc
Q 009632 452 IRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVM 506 (530)
Q Consensus 452 Vr~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~ 506 (530)
+-..++.++|+......... ...+++..+.+.+.+.+..+|..++.++.++....
T Consensus 496 li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~ 552 (621)
T 2vgl_A 496 LVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLF 552 (621)
T ss_dssp HHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHC
Confidence 44455566666544332110 01133444555555666677777777777665543
No 34
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.79 E-value=1.2e-16 Score=159.26 Aligned_cols=377 Identities=11% Similarity=0.072 Sum_probs=277.8
Q ss_pred hhHHHhhhcccchHHHHHHHHHHHHHHhhcCh----hhhhhhHHHHHHHHhc-CCccchhHHHHhHhhhhcCCCChH---
Q 009632 88 LPPLETLCTVEETCVRDKAVESLCRIGSQMRE----SDLVDWYIPLVKRLAA-GEWFTARVSACGLFHIAYPSAPDI--- 159 (530)
Q Consensus 88 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~l~~-~~~~~~r~~~~~~l~~l~~~~~~~--- 159 (530)
++-+...+++++..++..|+..+.++.+.-.. ..+..-++|.+.++++ ++++.++..|+.+++.++..-++.
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~ 138 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 138 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 44555666788899999999999988654321 2234447788877775 456789999999999998654433
Q ss_pred -HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc---hhhHHHHHHHHHHhhcCCch-----hHHHHHHHHHHHHh
Q 009632 160 -LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQD-----SVRLLAVEGCAALG 230 (530)
Q Consensus 160 -~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~-----~vr~~a~~~l~~l~ 230 (530)
.....+|.|..++.++++.||+.|+.+|++++...+. .......++.+..++.+.+. .+...+..++..++
T Consensus 139 vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 218 (510)
T 3ul1_B 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 218 (510)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHh
Confidence 1234789999999999999999999999999864322 22233467788888876542 35566777888877
Q ss_pred hhcCc---hhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC---cccccchHHHHHHhcCCCcHHHHHHHHHHH
Q 009632 231 KLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 304 (530)
Q Consensus 231 ~~~~~---~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l 304 (530)
..-.+ ......++|.+..++.+.++.++..++.+|..++..... ......++|.+.+++.++++.++..++.++
T Consensus 219 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL 298 (510)
T 3ul1_B 219 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI 298 (510)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred hcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHH
Confidence 65332 123456899999999999999999999999988743111 112345789999999999999999999999
Q ss_pred HHHHHhhCHH---HHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCH---HHHHHhHHHHHHHhhcCCChHHHHHH
Q 009632 305 TKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNI 378 (530)
Q Consensus 305 ~~~~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a 378 (530)
+.++..-+.. ......++.+..++.+++..+|..++.+++.++..-.. ......++|.+..++.+.+..+|..|
T Consensus 299 ~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A 378 (510)
T 3ul1_B 299 GNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEA 378 (510)
T ss_dssp HHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred HHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHH
Confidence 9986532211 22345678888889999999999999999998753321 12234688999999999999999999
Q ss_pred HHhhHHhhhhhchhH----HHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhh---Ch-hhHHH-----HHHHHHHHHh
Q 009632 379 ISKLDQVNQVIGIDL----LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL---GV-GFFDD-----KLGALCMQWL 445 (530)
Q Consensus 379 ~~~l~~l~~~~~~~~----~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~---~~-~~~~~-----~~~~~l~~~l 445 (530)
+.++.+++..-..+. .....++.|.+++..++..++..++.++..+.+.. +. +.+.. ..+..+..+.
T Consensus 379 a~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq 458 (510)
T 3ul1_B 379 AWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQ 458 (510)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGG
T ss_pred HHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHH
Confidence 999999876543332 23467899999999999999999999999887643 21 11211 2456677788
Q ss_pred cCCcHHHHHHHHHHHHHHH
Q 009632 446 QDKVYSIRDAAANNLKRLA 464 (530)
Q Consensus 446 ~d~~~~Vr~~a~~~l~~l~ 464 (530)
.+++.+|+..|...+...+
T Consensus 459 ~~~n~~i~~~A~~iie~yf 477 (510)
T 3ul1_B 459 RHENESVYKASLNLIEKYF 477 (510)
T ss_dssp GCSSHHHHHHHHHHHHHHC
T ss_pred cCCCHHHHHHHHHHHHHHC
Confidence 8899999999999876554
No 35
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.79 E-value=3e-16 Score=157.41 Aligned_cols=379 Identities=11% Similarity=0.067 Sum_probs=279.7
Q ss_pred cchhHHHhhhcccchHHHHHHHHHHHHHHhhcCh----hhhhhhHHHHHHHHhc-CCccchhHHHHhHhhhhcCCCChH-
Q 009632 86 VLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE----SDLVDWYIPLVKRLAA-GEWFTARVSACGLFHIAYPSAPDI- 159 (530)
Q Consensus 86 ~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~l~~-~~~~~~r~~~~~~l~~l~~~~~~~- 159 (530)
..++-+...+.+++...+..|+..+.++...-.. ..+...++|.+..++. ++++.++..|+.+++.++..-+..
T Consensus 76 ~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~ 155 (529)
T 3tpo_A 76 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 155 (529)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 3455566666778899999999999887653222 2234457777777775 556789999999999998765443
Q ss_pred ---HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc---hhhHHHHHHHHHHhhcCCch-----hHHHHHHHHHHH
Q 009632 160 ---LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQD-----SVRLLAVEGCAA 228 (530)
Q Consensus 160 ---~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~-----~vr~~a~~~l~~ 228 (530)
.....+|.|..++.++++.+|..|+.+|++++..-+. .......++.+..++.+.+. .+...+..++..
T Consensus 156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n 235 (529)
T 3tpo_A 156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 235 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHH
Confidence 2245789999999999999999999999999864322 22233467888888876542 355667778888
Q ss_pred HhhhcCc---hhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC---cccccchHHHHHHhcCCCcHHHHHHHHH
Q 009632 229 LGKLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEAEVRIAAAG 302 (530)
Q Consensus 229 l~~~~~~---~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~ 302 (530)
++..-.+ ......++|.+..++.+.+..++..++.+|..++..... ......++|.+..++.++++.++..++.
T Consensus 236 l~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~ 315 (529)
T 3tpo_A 236 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 315 (529)
T ss_dssp HHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHH
T ss_pred HHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHH
Confidence 7765432 223456899999999999999999999999988753211 1123467899999999999999999999
Q ss_pred HHHHHHHhhCH---HHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCH---HHHHHhHHHHHHHhhcCCChHHHH
Q 009632 303 KVTKFCRILNP---ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRL 376 (530)
Q Consensus 303 ~l~~~~~~~~~---~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~ 376 (530)
+++.++..-+. .......++.+..++.+++..+|..++.+++.++..-.. ......++|.+..++.+++..+|.
T Consensus 316 aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~ 395 (529)
T 3tpo_A 316 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQK 395 (529)
T ss_dssp HHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHH
Confidence 99998753221 123356788889999999999999999999998753221 122346889999999999999999
Q ss_pred HHHHhhHHhhhhhchhHH----HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhh---Ch-hhHHHH-----HHHHHHH
Q 009632 377 NIISKLDQVNQVIGIDLL----SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL---GV-GFFDDK-----LGALCMQ 443 (530)
Q Consensus 377 ~a~~~l~~l~~~~~~~~~----~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~---~~-~~~~~~-----~~~~l~~ 443 (530)
.|+.++.+++..-..+.. ...+++.|.+++..++..++..++.+|..+.+.. +. +.+... .+..+..
T Consensus 396 ~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~ 475 (529)
T 3tpo_A 396 AAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEA 475 (529)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHH
Confidence 999999998765433322 2467899999999999999999999999887643 21 112211 2455666
Q ss_pred HhcCCcHHHHHHHHHHHHHHH
Q 009632 444 WLQDKVYSIRDAAANNLKRLA 464 (530)
Q Consensus 444 ~l~d~~~~Vr~~a~~~l~~l~ 464 (530)
+..+++.+|+..|...+...+
T Consensus 476 Lq~~~n~~i~~~A~~iie~yf 496 (529)
T 3tpo_A 476 LQRHENESVYKASLNLIEKYF 496 (529)
T ss_dssp GGGCSSHHHHHHHHHHHHHHC
T ss_pred HHcCCCHHHHHHHHHHHHHHC
Confidence 778899999999999876654
No 36
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.78 E-value=4e-17 Score=165.45 Aligned_cols=479 Identities=10% Similarity=0.037 Sum_probs=321.2
Q ss_pred CCCCcCcHHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhcccccccc-ccCCchHHHHHHHHHHhcccccCCCcc
Q 009632 4 VDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVE 82 (530)
Q Consensus 4 ~~~~~~~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~~~ 82 (530)
|.+.-+.+...++.+.++|...|+.+.-++..++..- ++ ..-..++.++. +.++|+.+|..|..+++++.. ++
T Consensus 69 G~d~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~-~e-~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~----~e 142 (621)
T 2vgl_A 69 GHDIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSN-SE-LIRLINNAIKNDLASRNPTFMGLALHCIANVGS----RE 142 (621)
T ss_dssp SCCCCSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCC-HH-HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC----HH
T ss_pred CCCCchhHHHHHHHhcCCCHHHHHHHHHHHHHHccCC-cH-HHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCC----HH
Confidence 4454556778888999999999998888887665431 22 22233455555 889999999999999998843 67
Q ss_pred chhcchhHHHhhh--cccchHHHHHHHHHHHHHHhhcChhhhh-hhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChH
Q 009632 83 HAHVLLPPLETLC--TVEETCVRDKAVESLCRIGSQMRESDLV-DWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI 159 (530)
Q Consensus 83 ~~~~l~~~l~~l~--~d~~~~vR~~a~~~l~~l~~~~~~~~~~-~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~ 159 (530)
....+.+.+...+ .|.++.||+.|+.++.++.+..+ +... ..+.+.+..++.|+++.++..+..++..+...-+..
T Consensus 143 ~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p-~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~ 221 (621)
T 2vgl_A 143 MAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP-DLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEE 221 (621)
T ss_dssp HHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG-GGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh-hhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHH
Confidence 7888999999998 89999999999999999999543 3333 257788888888889999999999988877644332
Q ss_pred ---HHHHHHHHHHhhcCCC-------------ChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhh---cC-------
Q 009632 160 ---LKTELRSIYTQLCQDD-------------MPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLT---QD------- 213 (530)
Q Consensus 160 ---~~~~l~~~l~~l~~d~-------------~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~---~d------- 213 (530)
..+.+...+..++.+. ++-.+-..++.++.++..- ++.....+.+.+..++ .+
T Consensus 222 ~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~-d~~~~~~l~~~L~~il~~~~~~~ks~~l 300 (621)
T 2vgl_A 222 FKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPE-DPAVRGRLTECLETILNKAQEPPKSKKV 300 (621)
T ss_dssp HTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCS-SHHHHHHHHHHHHHHHHHHHSCCSCSSH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHhhccCcccccc
Confidence 3344555555554321 5667777776666654321 1122233333333222 22
Q ss_pred --Cch--hHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhc
Q 009632 214 --DQD--SVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLL 289 (530)
Q Consensus 214 --~~~--~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l 289 (530)
.+. .|.-.++.++..+. +...........+..++.++++.+|..++.++..++...+.........+.++..+
T Consensus 301 ~~~n~~~aVl~ea~~~i~~l~---~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L 377 (621)
T 2vgl_A 301 QHSNAKNAVLFEAISLIIHHD---SEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINAL 377 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHh
Confidence 122 56666666666553 33345556777888888888999999999999998765432122344567777888
Q ss_pred C-CCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhc
Q 009632 290 R-DNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK 368 (530)
Q Consensus 290 ~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~ 368 (530)
+ |++..||..++..+..++.. +. .+.++..+.+.+.+.+...|..++..++.++..+.++ ....+..+..++.
T Consensus 378 ~~d~d~~Ir~~aL~lL~~l~~~---~N-v~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~--~~~~v~~Ll~ll~ 451 (621)
T 2vgl_A 378 KTERDVSVRQRAVDLLYAMCDR---SN-AQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVD--YTWYVDTILNLIR 451 (621)
T ss_dssp TTCCCHHHHHHHHHHHHHHCCH---HH-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSS--THHHHHHHHHHHH
T ss_pred ccCCCHhHHHHHHHHHHHHcCh---hh-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc--HHHHHHHHHHHHH
Confidence 8 99999999999988877643 22 3556666666666778889999999999988665432 2334556666666
Q ss_pred CCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCCh--HHHHHHHHHHHHHHhhhChhh-H-HHHHHHHHHHH
Q 009632 369 DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHW--RVRLAIIEYIPLLASQLGVGF-F-DDKLGALCMQW 444 (530)
Q Consensus 369 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~--~~R~~~~~~l~~l~~~~~~~~-~-~~~~~~~l~~~ 444 (530)
+....+...++..+..++... +...+..+..+.+.+.++.. .+-..+++.+|..+....... . ...++..+.+.
T Consensus 452 ~~~~~v~~ev~~~l~~ii~~~--~~~~~~~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~ 529 (621)
T 2vgl_A 452 IAGDYVSEEVWYRVIQIVINR--DDVQGYAAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSK 529 (621)
T ss_dssp HHGGGSCSHHHHHHHHHHGGG--CSCHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHH
T ss_pred hhcccchHHHHHHHHHHHhCC--hhHHHHHHHHHHHHHcCccchHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHH
Confidence 554455555655555555432 22334556667777777653 344556688888776543211 1 12445566666
Q ss_pred hcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhcc--CCChHHHHHHHHHHHHHh
Q 009632 445 LQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN--NPHYLYRMTILRAISLLA 503 (530)
Q Consensus 445 l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~--d~~~~vr~~a~~~l~~i~ 503 (530)
+.+....||..++.++..++...+. ..+.+...+..... |.|.++|+.|...+.-+.
T Consensus 530 ~~~~~~~v~~~~Lta~~Kl~~~~p~--~~~~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll~ 588 (621)
T 2vgl_A 530 FHLCSVPTRALLLSTYIKFVNLFPE--VKATIQDVLRSDSQLKNADVELQQRAVEYLRLST 588 (621)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHHCGG--GHHHHHHHHSSHHHHSCSSHHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHHHHChH--HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHc
Confidence 6788899999999999998776532 22334444444555 899999999998877654
No 37
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.77 E-value=3.6e-17 Score=150.30 Aligned_cols=251 Identities=19% Similarity=0.143 Sum_probs=170.8
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHH
Q 009632 165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244 (530)
Q Consensus 165 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 244 (530)
++.+...+.|+++.+|..++.+|+.+.. +..++.+.+++.|+++.+|..|+.+++.++.. ......+++
T Consensus 25 i~~L~~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~---~~~~~~l~~ 93 (280)
T 1oyz_A 25 DDELFRLLDDHNSLKRISSARVLQLRGG--------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC---KKCEDNVFN 93 (280)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC---TTTHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCC--------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccc---cccchHHHH
Confidence 4667777888999999999999988652 45778888888999999999999998877532 112233555
Q ss_pred HHH-HhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHh
Q 009632 245 VIV-NFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPC 323 (530)
Q Consensus 245 ~l~-~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~ 323 (530)
.+. .+.+|+++.||..++.+|+.+....+ .....+++.+...++|+++.||..++.+++.+.. +..+|.
T Consensus 94 ~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~--~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--------~~~~~~ 163 (280)
T 1oyz_A 94 ILNNMALNDKSACVRATAIESTAQRCKKNP--IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--------KATIPL 163 (280)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------CCHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccCC--cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--------HHHHHH
Confidence 555 35678888889888888888875321 1124567777888888888888888888876643 235666
Q ss_pred HhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHH
Q 009632 324 VKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV 403 (530)
Q Consensus 324 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~ 403 (530)
+..+++|+++.||..++..++.+... ....++.+..+++|+++.||..++.+|+.+.. +..+|.+.
T Consensus 164 L~~~l~d~~~~vr~~a~~aL~~~~~~------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~--------~~~~~~L~ 229 (280)
T 1oyz_A 164 LINLLKDPNGDVRNWAAFAININKYD------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD--------KRVLSVLC 229 (280)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTCC------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC--------GGGHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHhhccC------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC--------HhhHHHHH
Confidence 66777778888888888777766321 12455667777777777788877777776541 34566666
Q ss_pred HHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcC-CcHHHHHHHHHHH
Q 009632 404 ELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQD-KVYSIRDAAANNL 460 (530)
Q Consensus 404 ~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d-~~~~Vr~~a~~~l 460 (530)
..+++++ +|..++.+++.+.. ...+|.+..++.+ ++..++..++..+
T Consensus 230 ~~l~d~~--vr~~a~~aL~~i~~--------~~~~~~L~~~l~~~~~~~~~~~~~~~l 277 (280)
T 1oyz_A 230 DELKKNT--VYDDIIEAAGELGD--------KTLLPVLDTMLYKFDDNEIITSAIDKL 277 (280)
T ss_dssp HHHTSSS--CCHHHHHHHHHHCC--------GGGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred HHhcCcc--HHHHHHHHHHhcCc--------hhhhHHHHHHHhcCCCcHHHHHHHHHh
Confidence 6666644 67777777766532 1345666666653 4455666665554
No 38
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.76 E-value=5.6e-15 Score=159.08 Aligned_cols=509 Identities=10% Similarity=0.041 Sum_probs=309.5
Q ss_pred CcHHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhccccccccccCCchHHHHHHHHHHhccccc-CC--------
Q 009632 9 YPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPY-VG-------- 79 (530)
Q Consensus 9 ~~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~~~~~l~~~~~~-~~-------- 79 (530)
..+..++....++|...| |...|.+.- . .|+ ....|...+. ..+.+.++|..++..|.+.+.. ..
T Consensus 5 ~~l~~~L~~~~spd~~~r--Ae~~L~~~~-~-~p~-~~~~L~~il~-~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l 78 (960)
T 1wa5_C 5 ETVAKFLAESVIASTAKT--SERNLRQLE-T-QDG-FGLTLLHVIA-STNLPLSTRLAGALFFKNFIKRKWVDENGNHLL 78 (960)
T ss_dssp HHHHHHHHHTTSGGGHHH--HHHHHHHHH-T-STT-HHHHHHHHHH-CTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSS
T ss_pred HHHHHHHHHhcCCCHHHH--HHHHHHHhh-c-CCC-HHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCC
Confidence 457778888889999998 888887652 1 121 2222222222 1234678999999999876542 11
Q ss_pred CccchhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCC--
Q 009632 80 GVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAP-- 157 (530)
Q Consensus 80 ~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~-- 157 (530)
+++....+=..+...+.+++..+|..+..++..++..--+ ..++.++|.+....++++...+..+..++..+.+...
T Consensus 79 ~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p-~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~ 157 (960)
T 1wa5_C 79 PANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFP-DRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPL 157 (960)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTS
T ss_pred CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCc-cchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 0111222222222233334589999999999999986444 3567788888888887777778888888887766432
Q ss_pred ---hHH-------HHHHH----HHHHh---hcCCCCh---hHH------HHHHHHHHHHHhhhcchhh---HHHHHHHHH
Q 009632 158 ---DIL-------KTELR----SIYTQ---LCQDDMP---MVR------RSAASNLGKFAATVEPAHL---KTDIMSIFE 208 (530)
Q Consensus 158 ---~~~-------~~~l~----~~l~~---l~~d~~~---~vR------~~a~~~l~~l~~~~~~~~~---~~~l~~~l~ 208 (530)
++. ..... +.+.. .+.++.. .+| ..+++++..+...-.++.+ .....+.+.
T Consensus 158 ~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~ 237 (960)
T 1wa5_C 158 FRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFH 237 (960)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHH
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH
Confidence 111 11222 32222 2444422 233 3344444433221112211 234455555
Q ss_pred HhhcC----------Cc-----hhHHHHHHHHHHHHhhhcCch--hhhhccHHHHHHhcC-----CCCHHHHHHHHHHHH
Q 009632 209 DLTQD----------DQ-----DSVRLLAVEGCAALGKLLEPQ--DCVAHILPVIVNFSQ-----DKSWRVRYMVANQLY 266 (530)
Q Consensus 209 ~~~~d----------~~-----~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~-----d~~~~vr~~~~~~l~ 266 (530)
+.+.. ++ +.+|+.+.+++..+....++. .+...+++.+...+. ..+..++..++..+.
T Consensus 238 ~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~ 317 (960)
T 1wa5_C 238 KYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLT 317 (960)
T ss_dssp HHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHH
T ss_pred HHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHH
Confidence 54421 11 257888888888888765542 223334444444432 345678888888887
Q ss_pred HHHHH------hCCcccccchH-HHHHHhcC-----------------------CCcHHHHHHHHHHHHHHHHhhCHHHH
Q 009632 267 ELCEA------VGPEPTRMDLV-PAYVRLLR-----------------------DNEAEVRIAAAGKVTKFCRILNPELA 316 (530)
Q Consensus 267 ~l~~~------~~~~~~~~~l~-~~l~~~l~-----------------------d~~~~vr~~a~~~l~~~~~~~~~~~~ 316 (530)
.+++. +....+...++ +.++..+. +..+.+|.+|...+..++..++ +..
T Consensus 318 ~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~-~~v 396 (960)
T 1wa5_C 318 AVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE-VLV 396 (960)
T ss_dssp HHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH-HHH
T ss_pred HHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc-hhH
Confidence 76532 11111222333 33333321 1113578999999999999887 555
Q ss_pred HhhhhHhHhHhcc------CCcHHHHHHHHHHHHhhcccc-----CHH------HHHHhHHHHHHHhhcCC---ChHHHH
Q 009632 317 IQHILPCVKELSS------DSSQHVRSALASVIMGMAPLL-----GKD------ATIEQLLPIFLSLLKDE---FPDVRL 376 (530)
Q Consensus 317 ~~~l~~~l~~~~~------d~~~~vr~~~~~~l~~l~~~~-----~~~------~~~~~l~~~l~~~l~d~---~~~vr~ 376 (530)
.+.+++.+.+.+. +.+|+.|.+++..++.++... +.. .+.+.+...+...++|+ .+.||.
T Consensus 397 ~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~ 476 (960)
T 1wa5_C 397 TNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRV 476 (960)
T ss_dssp HHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHH
T ss_pred HHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehH
Confidence 5677777766655 678999999999999986532 111 23333334455556777 889999
Q ss_pred HHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhC----------hh---hHHHHHHHHHHH
Q 009632 377 NIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG----------VG---FFDDKLGALCMQ 443 (530)
Q Consensus 377 ~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~----------~~---~~~~~~~~~l~~ 443 (530)
.++.+++.+...+.++ ....+++.+...+.+++..+|..|+.++..++.... .+ .+...+++.+..
T Consensus 477 ~a~~~lg~~~~~~~~~-~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ 555 (960)
T 1wa5_C 477 DAIKYIYTFRNQLTKA-QLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIA 555 (960)
T ss_dssp HHHHHHHHTGGGSCHH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCHH-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHH
Confidence 9999999999887544 457788999888899999999999999999887422 22 244667777777
Q ss_pred HhcCCc-----HHHHHHHHHHHHHHHHHhChhHHh--hhhHHHHHhh----ccC-CChHHHHHHHHHHHHHhhhcChH--
Q 009632 444 WLQDKV-----YSIRDAAANNLKRLAEEFGPEWAM--QHITPQVLEM----INN-PHYLYRMTILRAISLLAPVMGSE-- 509 (530)
Q Consensus 444 ~l~d~~-----~~Vr~~a~~~l~~l~~~~~~~~~~--~~i~~~l~~~----~~d-~~~~vr~~a~~~l~~i~~~~~~~-- 509 (530)
++.... ......+.++++.++...++.... ..+++.+... .++ .+...+..++++++.++...+++
T Consensus 556 ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~ 635 (960)
T 1wa5_C 556 LILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNL 635 (960)
T ss_dssp HHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGH
T ss_pred HHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchH
Confidence 776531 114568889999998887754321 3344444433 233 46677888999999998875543
Q ss_pred -HHHhhHHHHHHhhccCC
Q 009632 510 -ITCSRLLPVVINASKDR 526 (530)
Q Consensus 510 -~~~~~~~p~l~~~l~D~ 526 (530)
.+.+.++|.+...+...
T Consensus 636 ~~~~~~~~p~~~~iL~~~ 653 (960)
T 1wa5_C 636 PLLVDSMMPTFLTVFSED 653 (960)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 34667777777665443
No 39
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.75 E-value=6.9e-15 Score=158.33 Aligned_cols=490 Identities=10% Similarity=0.054 Sum_probs=305.5
Q ss_pred HHHHHhc--ChhHHHHHHHhhcHHHHHHh-hC--------hHhhhhcccccccc-ccCCchHHHHHHHHHHhcccccCCC
Q 009632 13 VLIDELK--NDDIQLRLNSIRRLSTIARA-LG--------EERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGG 80 (530)
Q Consensus 13 ~l~~~l~--~~~~~~R~~a~~~l~~~~~~-~~--------~~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~ 80 (530)
.|++-+. +.+...|..|...+...... .. ++..+..+...+.+ +.+++..+|..++.++..++..-.
T Consensus 39 ~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~- 117 (960)
T 1wa5_C 39 TLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDF- 117 (960)
T ss_dssp HHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhC-
Confidence 3444443 34678999999999886543 11 12222233333333 234458899999999998887533
Q ss_pred ccchhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcCh----hh----h----hhhH---HHHHHHH---hcCCcc---
Q 009632 81 VEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE----SD----L----VDWY---IPLVKRL---AAGEWF--- 139 (530)
Q Consensus 81 ~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~----~~----~----~~~l---~~~l~~l---~~~~~~--- 139 (530)
+..|+.+++.+...+++.+...+..++.++..+++.+.. +. . .... +.++... ..++..
T Consensus 118 p~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~ 197 (960)
T 1wa5_C 118 PDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKA 197 (960)
T ss_dssp TTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CH
T ss_pred ccchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 356899999999998888888999999999999997642 11 1 1111 1222222 333211
Q ss_pred chh------HHHHhHhhhhc-CCCChH---HHHHHHHHHHhhcCC-----------CC----hhHHHHHHHHHHHHHhhh
Q 009632 140 TAR------VSACGLFHIAY-PSAPDI---LKTELRSIYTQLCQD-----------DM----PMVRRSAASNLGKFAATV 194 (530)
Q Consensus 140 ~~r------~~~~~~l~~l~-~~~~~~---~~~~l~~~l~~l~~d-----------~~----~~vR~~a~~~l~~l~~~~ 194 (530)
.+| ..++.++..+. ...++. ....+.+.+...+.. .+ +.+|+.++.++..+....
T Consensus 198 ~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~ 277 (960)
T 1wa5_C 198 SLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRY 277 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHH
Confidence 123 22444444332 233332 334455655554321 11 468999999999988766
Q ss_pred cch--hhHHHHHHHHHHhhc-----CCchhHHHHHHHHHHHHhhhcC------chhhhhccH-HHHHHhc----------
Q 009632 195 EPA--HLKTDIMSIFEDLTQ-----DDQDSVRLLAVEGCAALGKLLE------PQDCVAHIL-PVIVNFS---------- 250 (530)
Q Consensus 195 ~~~--~~~~~l~~~l~~~~~-----d~~~~vr~~a~~~l~~l~~~~~------~~~~~~~~~-~~l~~~~---------- 250 (530)
++. .+.+.+++.+.+.+. ..++.++..+++.+..+++.-. ...+...++ +.+...+
T Consensus 278 ~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w 357 (960)
T 1wa5_C 278 EDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELF 357 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHH
Confidence 542 234456666666554 3456889999999988864311 012222222 2222111
Q ss_pred -------------CCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcC------CCcHHHHHHHHHHHHHHHHhh
Q 009632 251 -------------QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLR------DNEAEVRIAAAGKVTKFCRIL 311 (530)
Q Consensus 251 -------------~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~------d~~~~vr~~a~~~l~~~~~~~ 311 (530)
.+..+..|.++...+..++..++ +...+.+++.+.+.+. +++|..|.+|+.+++.++...
T Consensus 358 ~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~-~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~ 436 (960)
T 1wa5_C 358 EDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE-VLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAING 436 (960)
T ss_dssp TTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSS
T ss_pred hcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc-hhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHh
Confidence 12235689999999999998877 3334556676666665 677899999999999997542
Q ss_pred -----CHH------HHHhhhhHhHhHhccCC---cHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHH
Q 009632 312 -----NPE------LAIQHILPCVKELSSDS---SQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLN 377 (530)
Q Consensus 312 -----~~~------~~~~~l~~~l~~~~~d~---~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~ 377 (530)
+.. .+.+.+...+...+.|+ ++.+|..++..++.+++.+.+ .+...+++.+.+.|.|++..||..
T Consensus 437 ~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~-~~l~~~l~~l~~~L~d~~~~V~~~ 515 (960)
T 1wa5_C 437 NITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTK-AQLIELMPILATFLQTDEYVVYTY 515 (960)
T ss_dssp CCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCH-HHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred ccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCH-HHHHHHHHHHHHHhCCCChhHHHH
Confidence 111 12121222222233555 899999999999999988764 567788999999999999999999
Q ss_pred HHHhhHHhhhhhc----------hhH---HHhhHHHHHHHHhcCCC-----hHHHHHHHHHHHHHHhhhChhh--HHHHH
Q 009632 378 IISKLDQVNQVIG----------IDL---LSQSLLPAIVELAEDRH-----WRVRLAIIEYIPLLASQLGVGF--FDDKL 437 (530)
Q Consensus 378 a~~~l~~l~~~~~----------~~~---~~~~l~~~l~~~~~~~~-----~~~R~~~~~~l~~l~~~~~~~~--~~~~~ 437 (530)
|+.++..++.... .+. +.+.+++.+..++.... ......++.+++.++...+.+. +...+
T Consensus 516 A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l 595 (960)
T 1wa5_C 516 AAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQL 595 (960)
T ss_dssp HHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHH
T ss_pred HHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 9999999887421 222 23556666666665531 1133577888888877766433 33445
Q ss_pred HHHHHHHh----cC-CcHHHHHHHHHHHHHHHHHhChhH---HhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhh
Q 009632 438 GALCMQWL----QD-KVYSIRDAAANNLKRLAEEFGPEW---AMQHITPQVLEMINNPHYLYRMTILRAISLLAPV 505 (530)
Q Consensus 438 ~~~l~~~l----~d-~~~~Vr~~a~~~l~~l~~~~~~~~---~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~ 505 (530)
++.+...+ ++ .+...+..++++++.++...+++. ..+.++|.+...+.....+....+.+.++.+...
T Consensus 596 ~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~ 671 (960)
T 1wa5_C 596 LAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQ 671 (960)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHh
Confidence 55444433 33 456788889999999998855432 2367788888877665556777788888877655
No 40
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.75 E-value=1.8e-16 Score=145.58 Aligned_cols=253 Identities=16% Similarity=0.142 Sum_probs=165.7
Q ss_pred chhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChHHHHHHHH
Q 009632 87 LLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRS 166 (530)
Q Consensus 87 l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~ 166 (530)
-++.|...+.|+++.+|..|+.+|+.+.. ....+.+..+++++++.+|..++..++.+... +.....+++
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~--~~~~~~l~~ 93 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRGG--------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC--KKCEDNVFN 93 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC--TTTHHHHHH
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccCC--------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccc--cccchHHHH
Confidence 34556666778888999998888888752 23456666677777777888888777776532 223444556
Q ss_pred HHH-hhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHH
Q 009632 167 IYT-QLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPV 245 (530)
Q Consensus 167 ~l~-~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ 245 (530)
.+. .+.+|+++.||..++.+|+.+....+ ...+.+++.+...+.|+++.||..|+.+++.++. ...+|.
T Consensus 94 ~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~--~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--------~~~~~~ 163 (280)
T 1oyz_A 94 ILNNMALNDKSACVRATAIESTAQRCKKNP--IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--------KATIPL 163 (280)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------CCHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccCC--cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--------HHHHHH
Confidence 655 35677888888888888888764322 1234567777777888888888888887776543 236677
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHh
Q 009632 246 IVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVK 325 (530)
Q Consensus 246 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~ 325 (530)
+..+++|+++.||..++.+++.+. . .....++.+...++|+++.||..++.+|+.+.. +..+|.+.
T Consensus 164 L~~~l~d~~~~vr~~a~~aL~~~~----~--~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~--------~~~~~~L~ 229 (280)
T 1oyz_A 164 LINLLKDPNGDVRNWAAFAININK----Y--DNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD--------KRVLSVLC 229 (280)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHT----C--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC--------GGGHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHhhc----c--CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC--------HhhHHHHH
Confidence 777777777888888887777662 1 123566777777777777888877777776642 34455555
Q ss_pred HhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcC-CChHHHHHHHHhhH
Q 009632 326 ELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKD-EFPDVRLNIISKLD 383 (530)
Q Consensus 326 ~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~ 383 (530)
..++|++ +|..++..++.+.. +..+|.+..++++ ++..++..++..+.
T Consensus 230 ~~l~d~~--vr~~a~~aL~~i~~--------~~~~~~L~~~l~~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 230 DELKKNT--VYDDIIEAAGELGD--------KTLLPVLDTMLYKFDDNEIITSAIDKLK 278 (280)
T ss_dssp HHHTSSS--CCHHHHHHHHHHCC--------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred HHhcCcc--HHHHHHHHHHhcCc--------hhhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence 5555544 67777777766643 2456666666654 34556555555543
No 41
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.68 E-value=8.6e-15 Score=158.28 Aligned_cols=487 Identities=10% Similarity=0.006 Sum_probs=295.5
Q ss_pred CcCcHHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhccccccccccCCchHHHHHHHHHHhccccc----CCCcc
Q 009632 7 PLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPY----VGGVE 82 (530)
Q Consensus 7 ~~~~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~~~~~l~~~~~~----~~~~~ 82 (530)
++..+..+++.+.++|+..|..|-+.|.++-.. | ..+..+...+. .+.++++|..++..|.+.++. +..++
T Consensus 5 d~~~l~~~l~~~~~~d~~~r~~A~~~L~~~~~~--p-~~w~~~~~lL~--~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~ 79 (971)
T 2x1g_F 5 DIARLEEAVVSFYRSNSQNQAITHEWLTDAEAS--P-QAWQFSWQLMQ--LGKSQEVQFFGAITLHSKLMKHWHEVPPEN 79 (971)
T ss_dssp ------CTHHHHHTSTTTC----CHHHHHTTTS--T-HHHHHHHHHTC--TTSCHHHHHHHHHHHHHHHHHCGGGCCGGG
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--H-HHHHHHHHHHh--cCCcHHHHHHHHHHHHHHHHccHhhCCHHH
Confidence 455566777777788988999999888765321 2 23333333332 246789999999999866542 22111
Q ss_pred ---chhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCC------ccchhHHHHhHhhhhc
Q 009632 83 ---HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGE------WFTARVSACGLFHIAY 153 (530)
Q Consensus 83 ---~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~------~~~~r~~~~~~l~~l~ 153 (530)
....++..+....++ ...||.....++..+++..-+ .+..+++.+....+++ +...+..+..++..+.
T Consensus 80 ~~~ir~~ll~~l~~~~~~-~~~vr~kl~~~la~i~~~~~p--~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~ 156 (971)
T 2x1g_F 80 REELKQKILESIVRFAGG-PKIVLNRLCISLGAYIVHMLG--EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIP 156 (971)
T ss_dssp HHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHTTC--C------HHHHHHHHTC----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHccc--cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhH
Confidence 234556665554433 589999999999999997654 4555566665555442 3345556666655443
Q ss_pred CC----CCh-------H----HHHHHHHHHHhhcCCC--------ChhHHHHHHHHHHHHHhh--hcchhhHHHHHHHHH
Q 009632 154 PS----APD-------I----LKTELRSIYTQLCQDD--------MPMVRRSAASNLGKFAAT--VEPAHLKTDIMSIFE 208 (530)
Q Consensus 154 ~~----~~~-------~----~~~~l~~~l~~l~~d~--------~~~vR~~a~~~l~~l~~~--~~~~~~~~~l~~~l~ 208 (530)
+. -+. + ..+.+++.+..++.+. .+.++..+++++..+... .+.. ....+++.+.
T Consensus 157 EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~-~~~~ll~~l~ 235 (971)
T 2x1g_F 157 EEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE-GCVTITAVLL 235 (971)
T ss_dssp HHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG-GHHHHHHHHH
T ss_pred HHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc-ccccHHHHHH
Confidence 21 110 1 2345666665554321 138999999999998873 4444 5566777766
Q ss_pred Hhh----------------cCCchhHHHHHHHHHHHHhhhcCchh---hhhccHHHHHH-------hcCCCC---HHHHH
Q 009632 209 DLT----------------QDDQDSVRLLAVEGCAALGKLLEPQD---CVAHILPVIVN-------FSQDKS---WRVRY 259 (530)
Q Consensus 209 ~~~----------------~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~~~~~l~~-------~~~d~~---~~vr~ 259 (530)
+ + .++++++|..|++++..+...-.... ....++|.+.. ...+.+ .....
T Consensus 236 ~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~ 314 (971)
T 2x1g_F 236 E-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIV 314 (971)
T ss_dssp H-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHH
T ss_pred h-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHH
Confidence 6 4 12467899999999999987532211 22223333322 123333 24666
Q ss_pred HHHHHHHHHHHHh----C----C-----cccccchHHHHHHhcC-----CCcHHHHHHHHHHHHHHHHhh-C--------
Q 009632 260 MVANQLYELCEAV----G----P-----EPTRMDLVPAYVRLLR-----DNEAEVRIAAAGKVTKFCRIL-N-------- 312 (530)
Q Consensus 260 ~~~~~l~~l~~~~----~----~-----~~~~~~l~~~l~~~l~-----d~~~~vr~~a~~~l~~~~~~~-~-------- 312 (530)
.+++.+..+++.. . + ......+++.+++... ..+++|...++..+..+++.. +
T Consensus 315 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~ 394 (971)
T 2x1g_F 315 HIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKH 394 (971)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------C
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchH
Confidence 6777777776431 1 1 0112345566666542 246788888888887776622 1
Q ss_pred H-----HHHHhhhhHhHhHhcc---CC-----c-------HHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcC---
Q 009632 313 P-----ELAIQHILPCVKELSS---DS-----S-------QHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKD--- 369 (530)
Q Consensus 313 ~-----~~~~~~l~~~l~~~~~---d~-----~-------~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d--- 369 (530)
. ..+...+++.+...+. |. + ...|..+...+..++..+| +...+.+++.+...+..
T Consensus 395 ~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~~ 473 (971)
T 2x1g_F 395 KCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLN-DYILEILAAMLDEAIADLQR 473 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCT-THHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhccC
Confidence 0 1122333343333221 11 1 1467778888888888777 55666777777777754
Q ss_pred --CChHHHHHHHHhhHHhhhhhchhH--HHhhHHHHHHHHh-cCCChHHHHHHHHHHHHHHhhhChh-hHHHHHHHHHHH
Q 009632 370 --EFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQLGVG-FFDDKLGALCMQ 443 (530)
Q Consensus 370 --~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~~-~~~~~~~R~~~~~~l~~l~~~~~~~-~~~~~~~~~l~~ 443 (530)
.+|..|++++.+++.+++...... ..+.+++.+..+. .|++..+|..++.+++.++..++.. .+...++|.+..
T Consensus 474 ~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~ 553 (971)
T 2x1g_F 474 HPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVR 553 (971)
T ss_dssp CTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 688999999999999987665422 2234555443433 2568999999999999999887642 345678888888
Q ss_pred HhcCCcHHHHHHHHHHHHHHHHHhChhHH--hhhhHHHHHhhccC--CChHHHHHHHHHHHHHhhhcC
Q 009632 444 WLQDKVYSIRDAAANNLKRLAEEFGPEWA--MQHITPQVLEMINN--PHYLYRMTILRAISLLAPVMG 507 (530)
Q Consensus 444 ~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~--~~~i~~~l~~~~~d--~~~~vr~~a~~~l~~i~~~~~ 507 (530)
.+ | +.|+..|+.++..+++.++.... .+.++..+.++++. -+...+..++++++.++..++
T Consensus 554 ~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~ 618 (971)
T 2x1g_F 554 GL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLR 618 (971)
T ss_dssp HH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSC
T ss_pred Hh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCC
Confidence 88 4 78999999999999988765422 25566666677766 357899999999999998776
No 42
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.68 E-value=3.8e-15 Score=133.27 Aligned_cols=204 Identities=16% Similarity=0.190 Sum_probs=145.8
Q ss_pred CchhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC--cccccchHHHHHHhc-CCCcHHHHHHHHHHHHHHHHh
Q 009632 234 EPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRMDLVPAYVRLL-RDNEAEVRIAAAGKVTKFCRI 310 (530)
Q Consensus 234 ~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~ 310 (530)
++.+....+-+.+.+.++|.+|..|..++..|..+....+. ......+++.+...+ +|++..||..++.+++.++..
T Consensus 8 ~~~di~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~ 87 (242)
T 2qk2_A 8 DPVDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKG 87 (242)
T ss_dssp SCBCCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred CcccccccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 34445555666677788888999999999999988877432 111245677777777 377778888888887777754
Q ss_pred hCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhc
Q 009632 311 LNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG 390 (530)
Q Consensus 311 ~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 390 (530)
++.. -..+...++|.++..++|.+..||.++..++..++...+
T Consensus 88 l~~~-------------------------------------~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~ 130 (242)
T 2qk2_A 88 LAKR-------------------------------------FSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS 130 (242)
T ss_dssp HGGG-------------------------------------GHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC
T ss_pred Hhhh-------------------------------------HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC
Confidence 4321 023455667777777777777777777777777776655
Q ss_pred hhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChh----hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Q 009632 391 IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG----FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE 466 (530)
Q Consensus 391 ~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~----~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 466 (530)
. +.++|.+...+++++|.+|..++.+++.+....+++ .+...++|.+..++.|+.+.||.+|..+++.++..
T Consensus 131 ~----~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 131 L----EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp H----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred H----HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 3 457777777888888888888888888877665422 35567888888888888888888888888888888
Q ss_pred hChhHHhhhhHHH
Q 009632 467 FGPEWAMQHITPQ 479 (530)
Q Consensus 467 ~~~~~~~~~i~~~ 479 (530)
+|++.. ..+++.
T Consensus 207 vg~~~~-~~~l~~ 218 (242)
T 2qk2_A 207 MGDKAV-TPLLAD 218 (242)
T ss_dssp HCHHHH-GGGGTT
T ss_pred cCHHHH-HHHHHh
Confidence 887643 334444
No 43
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.68 E-value=3.7e-13 Score=145.65 Aligned_cols=491 Identities=11% Similarity=0.071 Sum_probs=306.0
Q ss_pred CCCCCcCcHHHHHHH-hcChhHHHHHHHhhcHHHHHHhhChHhhhhccccccccccCCchHHHHHHHHHHhccccc----
Q 009632 3 MVDEPLYPIAVLIDE-LKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPY---- 77 (530)
Q Consensus 3 ~~~~~~~~~~~l~~~-l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~~~~~l~~~~~~---- 77 (530)
|...++..+..+++. ..++|+..|..|-+.|.++-.. | ..+..+...+. .+.++++|..++..|.+.++.
T Consensus 18 m~~~~~~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~--p-~~~~~~~~lL~--~~~~~~vr~~aa~~L~~~i~~~w~~ 92 (963)
T 2x19_B 18 ALDFTVENVEKALHQLYYDPNIENKNLAQKWLMQAQVS--P-QAWHFSWQLLQ--PDKVPEIQYFGASALHIKISRYWSD 92 (963)
T ss_dssp CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHS--T-THHHHHHHHTS--TTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCHhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--H-HHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHhCHHh
Confidence 444566677788877 4468999999999999876442 2 23333333332 256789999999999866542
Q ss_pred CCCcc---chhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcC-----CccchhHHHHhHh
Q 009632 78 VGGVE---HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAG-----EWFTARVSACGLF 149 (530)
Q Consensus 78 ~~~~~---~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~-----~~~~~r~~~~~~l 149 (530)
+..++ ....++..+.... .....||.....++..+++.--++. +..+++.+....++ ++...+..+..++
T Consensus 93 l~~~~~~~ir~~ll~~l~~~~-~~~~~ir~kl~~~la~i~~~~~p~~-Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL 170 (963)
T 2x19_B 93 IPTDQYESLKAQLFTQITRFA-SGSKIVLTRLCVALASLALSMMPDA-WPCAVADMVRLFQAEDSPVDGQGRCLALLELL 170 (963)
T ss_dssp SCGGGHHHHHHHHHHHHHHTT-TSCHHHHHHHHHHHHHHHHHHTTTT-STTHHHHHHHHHCC------CHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHhCccc-cchHHHHHHHHHhhhccCCCcHHHHHHHHHHH
Confidence 22111 2344555554432 2358999999999999998744433 55566666666654 2333455555555
Q ss_pred hhhcC----C-C--------C---hHHHHHHHHHHHhhcCCCCh--hHHHHHHHHHHHHHhhhcchh-hHHHHHHHHHHh
Q 009632 150 HIAYP----S-A--------P---DILKTELRSIYTQLCQDDMP--MVRRSAASNLGKFAATVEPAH-LKTDIMSIFEDL 210 (530)
Q Consensus 150 ~~l~~----~-~--------~---~~~~~~l~~~l~~l~~d~~~--~vR~~a~~~l~~l~~~~~~~~-~~~~l~~~l~~~ 210 (530)
..+.+ . . . ....+.+++.+..++.+.+. .++..+++++..++. .+... ....+++.+.+.
T Consensus 171 ~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~~~~~~~ll~~l~~~ 249 (963)
T 2x19_B 171 TVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVPLQDCEALIQAAFAA 249 (963)
T ss_dssp HHHHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHT-SSCCGGGTHHHHHHHHHH
T ss_pred HhCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc-CCCCcccchHHHHHHHHH
Confidence 54432 1 0 0 12456778888877765432 488889999887776 33321 225678887777
Q ss_pred hcCCchhHHHHHHHHHHHHhhhcCchh---hhhccHHHHHH-------hcCCCCHHHHHHHHHHHHHHHHHhCCc-----
Q 009632 211 TQDDQDSVRLLAVEGCAALGKLLEPQD---CVAHILPVIVN-------FSQDKSWRVRYMVANQLYELCEAVGPE----- 275 (530)
Q Consensus 211 ~~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~~~~~l~~-------~~~d~~~~vr~~~~~~l~~l~~~~~~~----- 275 (530)
+. ++++|..|++++..+.....+.. ....+++.+.. ...+.+......+++.+..++......
T Consensus 250 l~--~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~ 327 (963)
T 2x19_B 250 LQ--DSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQV 327 (963)
T ss_dssp TT--STTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCG
T ss_pred hC--CchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCc
Confidence 75 46799999999999987543221 12222232221 122333445566677777766432111
Q ss_pred ---ccccchHHHHHHhcCC-----CcHHHHHHHHHHHHHHHHhhC-------H------HHHHhhhhHhHhHhccCC---
Q 009632 276 ---PTRMDLVPAYVRLLRD-----NEAEVRIAAAGKVTKFCRILN-------P------ELAIQHILPCVKELSSDS--- 331 (530)
Q Consensus 276 ---~~~~~l~~~l~~~l~d-----~~~~vr~~a~~~l~~~~~~~~-------~------~~~~~~l~~~l~~~~~d~--- 331 (530)
.....++..+++...+ .++++...++..+..+++... + ..+...+++.+...+..+
T Consensus 328 ~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~ 407 (963)
T 2x19_B 328 EHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDE 407 (963)
T ss_dssp GGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred cchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 1123455666665554 345666666666666655221 0 012223333332222110
Q ss_pred -----------cH-HHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhh----cCCChHHHHHHHHhhHHhhhhhchhH--
Q 009632 332 -----------SQ-HVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL----KDEFPDVRLNIISKLDQVNQVIGIDL-- 393 (530)
Q Consensus 332 -----------~~-~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l----~d~~~~vr~~a~~~l~~l~~~~~~~~-- 393 (530)
++ ..|..+...+..++...+ +...+.+.+.+...+ .+.+|..|++++.+++.+++....+.
T Consensus 408 ~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~ 486 (963)
T 2x19_B 408 EYGFWSSDEKEQFRIYRVDISDTLMYVYEMLG-AELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSD 486 (963)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCS
T ss_pred cccCCChhHHHHHHHHHHHHHHHHHHHHHHcc-HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhH
Confidence 11 346677777777777666 345566777777777 67789999999999999987765321
Q ss_pred HHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChh-hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHH
Q 009632 394 LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG-FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA 472 (530)
Q Consensus 394 ~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~-~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~ 472 (530)
....+++.+..+ .+++..+|..++.+++.++..++.. .+...+++.+...+.+ +.|+..|+.++..+++..+....
T Consensus 487 ~l~~l~~~l~~l-~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~ 563 (963)
T 2x19_B 487 VVPGLIGLIPRI-SISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLP 563 (963)
T ss_dssp HHHHHHHHGGGS-CCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCT
T ss_pred HHHHHHHHHHhC-CCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHH
Confidence 223344433322 3457889999999999999876532 3456678888888876 78999999999999988764421
Q ss_pred --hhhhHHHHHhhccC--CChHHHHHHHHHHHHHhhhcC
Q 009632 473 --MQHITPQVLEMINN--PHYLYRMTILRAISLLAPVMG 507 (530)
Q Consensus 473 --~~~i~~~l~~~~~d--~~~~vr~~a~~~l~~i~~~~~ 507 (530)
.+.++..+..+++. -+...|..++++++.++...+
T Consensus 564 p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~ 602 (963)
T 2x19_B 564 PYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQ 602 (963)
T ss_dssp TTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSC
T ss_pred hhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCC
Confidence 25566666666664 356889999999999998776
No 44
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.68 E-value=3.6e-15 Score=133.38 Aligned_cols=193 Identities=13% Similarity=0.136 Sum_probs=156.9
Q ss_pred HhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCH--HHHHHhHHHHHHHhhc-CCChHHHHHHHHhhHHhhhhhchh-
Q 009632 317 IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLK-DEFPDVRLNIISKLDQVNQVIGID- 392 (530)
Q Consensus 317 ~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~- 392 (530)
...+-+.+.+.++|++|+.|..++..+..+++..+. ......+++.+...+. |.+..||..++.+++.++..+|..
T Consensus 13 ~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~ 92 (242)
T 2qk2_A 13 LSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRF 92 (242)
T ss_dssp GGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGG
T ss_pred cccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhH
Confidence 345555666666777788777777777776554211 1113567788888894 999999999999999999988864
Q ss_pred -HHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh-
Q 009632 393 -LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE- 470 (530)
Q Consensus 393 -~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~- 470 (530)
.+...++|.+.+.+.|++..+|..+..++..++...+. +.++|.+...+.++++.||..++..++.+...+++.
T Consensus 93 ~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~----~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~ 168 (242)
T 2qk2_A 93 SNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL----EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTA 168 (242)
T ss_dssp HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH----HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCC
Confidence 34578999999999999999999999999999987763 458899999999999999999999999988776532
Q ss_pred ---HHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcChHHHHh
Q 009632 471 ---WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCS 513 (530)
Q Consensus 471 ---~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~~~~~~ 513 (530)
.....++|.+..+++|+++.||..|..+++.++..+|.+.+.+
T Consensus 169 ~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~ 214 (242)
T 2qk2_A 169 LNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTP 214 (242)
T ss_dssp CCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGG
T ss_pred ccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 3457899999999999999999999999999999999775533
No 45
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.66 E-value=9.7e-15 Score=127.84 Aligned_cols=185 Identities=21% Similarity=0.213 Sum_probs=124.1
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccH
Q 009632 164 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHIL 243 (530)
Q Consensus 164 l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 243 (530)
.++.+..++.|+++.+|..++..|+.+.. +..++.+.+.+.|+++.||..++.+++.+.. ...+
T Consensus 20 ~~~~L~~~L~~~~~~vR~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~~ 83 (211)
T 3ltm_A 20 KVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------ERAV 83 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGGH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------HHHH
Confidence 34556666677788888888777776532 2455667777777777788887777777642 2356
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHh
Q 009632 244 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPC 323 (530)
Q Consensus 244 ~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~ 323 (530)
+.+..+++|+++.||..++.+++.+. ....++.+..++.|+++.||..++.+|+.+.. +..++.
T Consensus 84 ~~L~~~l~~~~~~vr~~a~~aL~~~~--------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~ 147 (211)
T 3ltm_A 84 EPLIKALKDEDGWVRQSAAVALGQIG--------DERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAVEP 147 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHC--------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhC--------cHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--------HHHHHH
Confidence 66777777777778877777777663 23456777777777777777777777777632 234566
Q ss_pred HhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhh
Q 009632 324 VKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 388 (530)
Q Consensus 324 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 388 (530)
+..+++|+++.||..++..++.+.. +...+.+..+++|+++.||..|..+|..+...
T Consensus 148 L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 148 LIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHC----
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 6666677777777777777777642 34556666677777777777777777766544
No 46
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.65 E-value=6.4e-13 Score=144.34 Aligned_cols=491 Identities=9% Similarity=0.056 Sum_probs=307.6
Q ss_pred CcCcHHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhccccccccccCCchHHHHHHHHHHhccccc----CCCcc
Q 009632 7 PLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPY----VGGVE 82 (530)
Q Consensus 7 ~~~~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~~~~~l~~~~~~----~~~~~ 82 (530)
++..+..+++.+.+++...|..|-+.|.++-.. | ..+..+...+. .+.++++|..++..|.+.+.. +..++
T Consensus 14 ~~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~--p-~~~~~l~~iL~--~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~ 88 (1049)
T 3m1i_C 14 DIALLDQVVSTFYQGSGVQQKQAQEILTKFQDN--P-DAWQKADQILQ--FSTNPQSKFIALSILDKLITRKWKLLPNDH 88 (1049)
T ss_dssp CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHS--T-TGGGGHHHHHH--HCSCHHHHHHHHHHHHHHHHHTGGGSCHHH
T ss_pred cHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhC--c-hHHHHHHHHHh--hCCCHHHHHHHHHHHHHHHHhhCccCCHHH
Confidence 556677888888888888999999999876432 2 23333333332 245889999999999876542 22111
Q ss_pred ---chhcchhHHHhhhccc-----chHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcC
Q 009632 83 ---HAHVLLPPLETLCTVE-----ETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYP 154 (530)
Q Consensus 83 ---~~~~l~~~l~~l~~d~-----~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~ 154 (530)
....++..+.....++ +..+|...+.++..+++.--+ ..++.+++.+....+ .+...+..+...+..+.+
T Consensus 89 ~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p-~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~e 166 (1049)
T 3m1i_C 89 RIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP-QNWPEFIPELIGSSS-SSVNVCENNMIVLKLLSE 166 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHHc-cChHHHHHHHHHHHHHHH
Confidence 1234444444333222 478999999999999987433 335556666666665 333345444444444332
Q ss_pred C--------CChH-----------HHHHHHHHHHhhcCC-CChhHHHHHHHHHHHHHhhhcchh-hHHHHHHHHHH-hhc
Q 009632 155 S--------APDI-----------LKTELRSIYTQLCQD-DMPMVRRSAASNLGKFAATVEPAH-LKTDIMSIFED-LTQ 212 (530)
Q Consensus 155 ~--------~~~~-----------~~~~l~~~l~~l~~d-~~~~vR~~a~~~l~~l~~~~~~~~-~~~~l~~~l~~-~~~ 212 (530)
. .+.. ..+.+++.+..++.+ .+..++..+++++..+....+... +.+.+++.+.+ ++.
T Consensus 167 ev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l~ 246 (1049)
T 3m1i_C 167 EVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT 246 (1049)
T ss_dssp HHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH
T ss_pred HHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhCC
Confidence 1 1111 123345555555443 457899999999998877665432 23446666553 333
Q ss_pred CCchhHHHHHHHHHHHHhhhc-Cch--hhhh-------ccHHHHHH--------------hcCCCCHHHHHHHHHHHHHH
Q 009632 213 DDQDSVRLLAVEGCAALGKLL-EPQ--DCVA-------HILPVIVN--------------FSQDKSWRVRYMVANQLYEL 268 (530)
Q Consensus 213 d~~~~vr~~a~~~l~~l~~~~-~~~--~~~~-------~~~~~l~~--------------~~~d~~~~vr~~~~~~l~~l 268 (530)
++.+|..|++++..+...- ++. .+.. .++..+.. ..++.++.....+++.+..+
T Consensus 247 --~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~ 324 (1049)
T 3m1i_C 247 --SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTY 324 (1049)
T ss_dssp --SHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHH
T ss_pred --CHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHH
Confidence 6789999999999988652 221 0111 12222211 11344566667777777666
Q ss_pred HHHh----CC-c---ccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhh----C-H---HHHHhhhhHhHhHhcc---
Q 009632 269 CEAV----GP-E---PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL----N-P---ELAIQHILPCVKELSS--- 329 (530)
Q Consensus 269 ~~~~----~~-~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~----~-~---~~~~~~l~~~l~~~~~--- 329 (530)
+... .. . .....+++.+++....++.++...++..+..+++.+ . . ..+...+++.+...+.
T Consensus 325 ~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~e 404 (1049)
T 3m1i_C 325 LARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPE 404 (1049)
T ss_dssp HHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCT
T ss_pred HHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 5432 11 1 112345677777777778899999998888887732 1 1 1233444444433221
Q ss_pred CC-------------------cHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhc--CCChHHHHHHHHhhHHhhhh
Q 009632 330 DS-------------------SQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK--DEFPDVRLNIISKLDQVNQV 388 (530)
Q Consensus 330 d~-------------------~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~--d~~~~vr~~a~~~l~~l~~~ 388 (530)
|. .|..|..+...+..++.. +.......+.+.+...+. ..+|..|++++.+++.+.+.
T Consensus 405 d~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~-~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~ 483 (1049)
T 3m1i_C 405 EVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHL-NVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGT 483 (1049)
T ss_dssp TCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTS
T ss_pred ceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcc
Confidence 10 134566667777777644 445566777777777775 36789999999999998776
Q ss_pred hchh---HHHhhHHHHHHHHhc-----CCChHHHHHHHHHHHHHHhhhCh-hhHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 009632 389 IGID---LLSQSLLPAIVELAE-----DRHWRVRLAIIEYIPLLASQLGV-GFFDDKLGALCMQWLQDKVYSIRDAAANN 459 (530)
Q Consensus 389 ~~~~---~~~~~l~~~l~~~~~-----~~~~~~R~~~~~~l~~l~~~~~~-~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~ 459 (530)
++.. .+...+++.+..+.. +++..+|..++.+++..+..+.. ..+...+++.++..+.|+++.||..|+.+
T Consensus 484 ~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~a 563 (1049)
T 3m1i_C 484 MSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDT 563 (1049)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred cCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 5543 223556666655432 24556676788999988776543 23556688888889999999999999999
Q ss_pred HHHHHHHhChhHH----------hhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcC
Q 009632 460 LKRLAEEFGPEWA----------MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG 507 (530)
Q Consensus 460 l~~l~~~~~~~~~----------~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~ 507 (530)
+..++...+.... .+.++..+...+++.+.+.+....++++.++...+
T Consensus 564 l~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~ 621 (1049)
T 3m1i_C 564 FIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1049)
T ss_dssp HHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCC
Confidence 9999998875532 24556666666666666677888999999998877
No 47
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.65 E-value=1.1e-14 Score=127.40 Aligned_cols=184 Identities=20% Similarity=0.205 Sum_probs=92.7
Q ss_pred cHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhh
Q 009632 242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHIL 321 (530)
Q Consensus 242 ~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~ 321 (530)
.++.+...++|+++.+|..++..|+.+. ....++.+.+++.|+++.||..++.+|+.+.. +..+
T Consensus 20 ~~~~L~~~L~~~~~~vR~~A~~~L~~~~--------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~~ 83 (211)
T 3ltm_A 20 KVEMYIKNLQDDSYYVRRAAAYALGKIG--------DERAVEPLIKALKDEDAWVRRAAADALGQIGD--------ERAV 83 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHC--------CGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGGH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhC--------CccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------HHHH
Confidence 4455555555555666665555555442 12345555555555555666666555555432 2234
Q ss_pred HhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHH
Q 009632 322 PCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPA 401 (530)
Q Consensus 322 ~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~ 401 (530)
+.+...++|+++.+|..++..++.+.. ...++.+..+++|+++.||..++.+++.+.. +..++.
T Consensus 84 ~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~ 147 (211)
T 3ltm_A 84 EPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAVEP 147 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--------HHHHHH
Confidence 444444555555555555555555432 1233445555555555555555555555421 234444
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 009632 402 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAE 465 (530)
Q Consensus 402 l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~ 465 (530)
+..+++|+++.+|..++.+++.+.. ...++.+..++.|+++.||..|..+|+.+..
T Consensus 148 L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 148 LIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETHKS 203 (211)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHC---
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 5555555555555555555555421 2344445555555555555555555555443
No 48
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.65 E-value=1.9e-14 Score=124.91 Aligned_cols=186 Identities=22% Similarity=0.219 Sum_probs=130.5
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhh
Q 009632 161 KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240 (530)
Q Consensus 161 ~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 240 (530)
.....+.+.++++|+++.+|..++..|+.+.. +..++.+.+.+.|+++.+|..|+.+++.+.. .
T Consensus 12 ~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--------~ 75 (201)
T 3ltj_A 12 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------E 75 (201)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------G
T ss_pred CCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC--------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------H
Confidence 34556677777788888888888888876542 2345667777778888888888887777642 2
Q ss_pred ccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhh
Q 009632 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI 320 (530)
Q Consensus 241 ~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l 320 (530)
..++.+...++|+++.||..++.+|+.+. ....++.+..++.|+++.||..++.+++.+.. +..
T Consensus 76 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~--------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~ 139 (201)
T 3ltj_A 76 RAVEPLIKALKDEDGWVRQSAAVALGQIG--------DERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERA 139 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHC--------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--------GGG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhC--------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHH
Confidence 35677777777888888888888777763 23456777777788888888888888777642 345
Q ss_pred hHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhh
Q 009632 321 LPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN 386 (530)
Q Consensus 321 ~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 386 (530)
++.+..+++|+++.+|..++..++.+.. ....+.+..+++|+++.||..|..+|+.+.
T Consensus 140 ~~~L~~~l~d~~~~vr~~A~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 140 VEPLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 6666677777777888887777777632 235566667777777777777777776653
No 49
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.65 E-value=5.9e-13 Score=144.57 Aligned_cols=445 Identities=8% Similarity=-0.017 Sum_probs=287.2
Q ss_pred cccCCchHHHHHHHHHHhcccccCCCccchhcchhHHHhhhcccchHHHHHHHHHHHHHHhh----cChh---hhhhhHH
Q 009632 55 ENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQ----MRES---DLVDWYI 127 (530)
Q Consensus 55 ~~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~----~~~~---~~~~~l~ 127 (530)
.+.+++...|+.|-..|..+-+. ++.+..+..++. ++.+..+|..|+..|.+.++. ++++ .++..++
T Consensus 24 ~~~~p~~~~r~~Ae~~L~~~~~~---p~~~~~l~~iL~---~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~~ll 97 (1049)
T 3m1i_C 24 TFYQGSGVQQKQAQEILTKFQDN---PDAWQKADQILQ---FSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVV 97 (1049)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHS---TTGGGGHHHHHH---HCSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHH
T ss_pred HHhCCChHHHHHHHHHHHHHHhC---chHHHHHHHHHh---hCCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHHHHH
Confidence 33345556888888888877552 344555544443 356889999999999997753 3332 2344566
Q ss_pred HHHHHHhcCC-----ccchhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc------
Q 009632 128 PLVKRLAAGE-----WFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP------ 196 (530)
Q Consensus 128 ~~l~~l~~~~-----~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~------ 196 (530)
..+.....++ +..+|...+.+++.++..--++.++++++.+..+++ .++..+..+...|..+.+.+..
T Consensus 98 ~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~ 176 (1049)
T 3m1i_C 98 GMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQM 176 (1049)
T ss_dssp HHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTS
T ss_pred HHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhh
Confidence 6655444333 356788888888888766444667778888888776 5666777788888877754331
Q ss_pred ---------h---hhHHHHHHHHHHhhcCC-chhHHHHHHHHHHHHhhhcCchh-hhhccHHHHHH-hcCCCCHHHHHHH
Q 009632 197 ---------A---HLKTDIMSIFEDLTQDD-QDSVRLLAVEGCAALGKLLEPQD-CVAHILPVIVN-FSQDKSWRVRYMV 261 (530)
Q Consensus 197 ---------~---~~~~~l~~~l~~~~~d~-~~~vr~~a~~~l~~l~~~~~~~~-~~~~~~~~l~~-~~~d~~~~vr~~~ 261 (530)
+ ...+.+++.+.+.+.+. +..++..+++++..+....+... +.+.+++.+.+ ++. ++.+|..+
T Consensus 177 ~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l~--~~~~~~~a 254 (1049)
T 3m1i_C 177 TQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT--SPDTRAIT 254 (1049)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH--SHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhCC--CHhHHHHH
Confidence 0 11234555556666543 46799999999988877655322 33456666653 332 67899999
Q ss_pred HHHHHHHHHHh-CCc--ccccc---hHHHHHHh------------------cCCCcHHHHHHHHHHHHHHHHhhC-----
Q 009632 262 ANQLYELCEAV-GPE--PTRMD---LVPAYVRL------------------LRDNEAEVRIAAAGKVTKFCRILN----- 312 (530)
Q Consensus 262 ~~~l~~l~~~~-~~~--~~~~~---l~~~l~~~------------------l~d~~~~vr~~a~~~l~~~~~~~~----- 312 (530)
++++..+...- ++. ....+ +.+.++.. -.+.+.++.....+.+..+++...
T Consensus 255 ~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~ 334 (1049)
T 3m1i_C 255 LKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLES 334 (1049)
T ss_dssp HHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999888651 121 01111 11212221 134456666666666655544221
Q ss_pred ---HHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhcccc-----C---HHHHHHhHHHHHHHhhcC---------C--
Q 009632 313 ---PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL-----G---KDATIEQLLPIFLSLLKD---------E-- 370 (530)
Q Consensus 313 ---~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~-----~---~~~~~~~l~~~l~~~l~d---------~-- 370 (530)
.......+++.+......++..+...+++.+..++... . ...+...+++.++..+.- +
T Consensus 335 ~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~ 414 (1049)
T 3m1i_C 335 DESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEG 414 (1049)
T ss_dssp CGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTS
T ss_pred ChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCC
Confidence 11223456666666666778889999998888876521 1 123556666776665521 0
Q ss_pred --------C---hHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhc--CCChHHHHHHHHHHHHHHhhhChh---hHH
Q 009632 371 --------F---PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE--DRHWRVRLAIIEYIPLLASQLGVG---FFD 434 (530)
Q Consensus 371 --------~---~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~--~~~~~~R~~~~~~l~~l~~~~~~~---~~~ 434 (530)
+ +..|..+...+..++...+ +...+.+.+.+.+.+. ..+|+.|.+++.+++.++..++.. .+.
T Consensus 415 e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~-~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l 493 (1049)
T 3m1i_C 415 EIVREFVKESDTIQLYKSEREVLVYLTHLNV-IDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFV 493 (1049)
T ss_dssp CEEECSSCCHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHH
T ss_pred cchHhhhccchHHHHHHHHHHHHHHHHccCH-HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHH
Confidence 1 1446677778888775444 4445667777766665 468999999999999998766543 335
Q ss_pred HHHHHHHHHHhc-----CCcHHHHHHHHHHHHHHHHHhChh-HHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcCh
Q 009632 435 DKLGALCMQWLQ-----DKVYSIRDAAANNLKRLAEEFGPE-WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS 508 (530)
Q Consensus 435 ~~~~~~l~~~l~-----d~~~~Vr~~a~~~l~~l~~~~~~~-~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~ 508 (530)
..+++.+..+.. |+.+.||..++.++|.+...+... .....+++.+...+.|++..||..|+.++.++++..+.
T Consensus 494 ~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~ 573 (1049)
T 3m1i_C 494 VTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKY 573 (1049)
T ss_dssp HHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 566776666442 456677778999999988776433 23366788888888999999999999999999998765
Q ss_pred H
Q 009632 509 E 509 (530)
Q Consensus 509 ~ 509 (530)
.
T Consensus 574 ~ 574 (1049)
T 3m1i_C 574 H 574 (1049)
T ss_dssp H
T ss_pred H
Confidence 4
No 50
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.65 E-value=3e-12 Score=138.49 Aligned_cols=492 Identities=11% Similarity=0.077 Sum_probs=293.4
Q ss_pred HHHHHHhhcHHHHHH--hhChHhhhhccccccccc----------------cCCchHHHHHHHHHHhcccccCCCccc--
Q 009632 24 QLRLNSIRRLSTIAR--ALGEERTRKELIPFLSEN----------------NDDDDEVLLAMAEELGVFIPYVGGVEH-- 83 (530)
Q Consensus 24 ~~R~~a~~~l~~~~~--~~~~~~~~~~l~~~l~~~----------------~d~~~~vr~~~~~~l~~~~~~~~~~~~-- 83 (530)
..+..+++++..... ..+.. ....+++.+..+ .++++++|..+..++..+...-...++
T Consensus 204 ~~~~~al~~l~~~~~~~~ip~~-~~~~ll~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~ 282 (971)
T 2x1g_F 204 SNMNRAVKCVGTWIKNIGYTIE-GCVTITAVLLEVVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPK 282 (971)
T ss_dssp HHHHHHHHHHHHHHHHSCCCGG-GHHHHHHHHHHHHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHH
T ss_pred hHHHHHHHHHHHHHhhCCcCcc-ccccHHHHHHhhhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHH
Confidence 678888888877655 23323 334455544321 125778999999999887763221121
Q ss_pred -hhcchhHHHh----h---hcccc---hHHHHHHHHHHHHHHhhcChh-------------hhhhhHHHHHHHHhcC---
Q 009632 84 -AHVLLPPLET----L---CTVEE---TCVRDKAVESLCRIGSQMRES-------------DLVDWYIPLVKRLAAG--- 136 (530)
Q Consensus 84 -~~~l~~~l~~----l---~~d~~---~~vR~~a~~~l~~l~~~~~~~-------------~~~~~l~~~l~~l~~~--- 136 (530)
...++|.+.. . ..+++ .......++.+..+++..... .....+++.+..+...
T Consensus 283 ~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~ 362 (971)
T 2x1g_F 283 TAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGI 362 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCC
Confidence 2222332222 1 13334 266666677777776432211 1111234444444422
Q ss_pred --CccchhHHHHhHhhhhcCCC---------Ch------HHHHHHHHHHHhhcC---CC-----C-------hhHHHHHH
Q 009632 137 --EWFTARVSACGLFHIAYPSA---------PD------ILKTELRSIYTQLCQ---DD-----M-------PMVRRSAA 184 (530)
Q Consensus 137 --~~~~~r~~~~~~l~~l~~~~---------~~------~~~~~l~~~l~~l~~---d~-----~-------~~vR~~a~ 184 (530)
.++.++..++..+..+.... .. .....+++.+...+. |. + ...|+++.
T Consensus 363 ~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~ 442 (971)
T 2x1g_F 363 YPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDIS 442 (971)
T ss_dssp TTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHH
T ss_pred CCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHH
Confidence 45677887777765553310 11 123344454444332 11 1 14788888
Q ss_pred HHHHHHHhhhcchhhHHHHHHHHHHhhcC-----CchhHHHHHHHHHHHHhhhcCch--hhhhccHHHHHHhcC-CCCHH
Q 009632 185 SNLGKFAATVEPAHLKTDIMSIFEDLTQD-----DQDSVRLLAVEGCAALGKLLEPQ--DCVAHILPVIVNFSQ-DKSWR 256 (530)
Q Consensus 185 ~~l~~l~~~~~~~~~~~~l~~~l~~~~~d-----~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~-d~~~~ 256 (530)
..+..++...+ +...+.+++.+.+.+.. .++..|++++.+++.+++.+.+. ...+.+++.+..+.. |.++.
T Consensus 443 ~~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~ 521 (971)
T 2x1g_F 443 DTFMYCYDVLN-DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVK 521 (971)
T ss_dssp HHHHHHHTTCT-THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHH
T ss_pred HHHHHHHHHHh-HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHH
Confidence 89988887766 44556666766666543 57889999999999999887652 234456665555542 56899
Q ss_pred HHHHHHHHHHHHHHHhCCc-ccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH--HHHhhhhHhHhHhccC--C
Q 009632 257 VRYMVANQLYELCEAVGPE-PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSD--S 331 (530)
Q Consensus 257 vr~~~~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~~~d--~ 331 (530)
||..++.+++.++..++.. .+...+++.+++.+ | +.|+..|+.++..+++.++.. .+.+.++..+.+++.. -
T Consensus 522 vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~ 598 (971)
T 2x1g_F 522 LLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRM 598 (971)
T ss_dssp HHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCC
Confidence 9999999999999988743 34567888888888 4 789999999999999877544 3334455555555554 3
Q ss_pred cHHHHHHHHHHHHhhccccCHHH---HHHhHHHHHH----HhhcCC--ChHHHHHHHHhhHHhhhh---hch--------
Q 009632 332 SQHVRSALASVIMGMAPLLGKDA---TIEQLLPIFL----SLLKDE--FPDVRLNIISKLDQVNQV---IGI-------- 391 (530)
Q Consensus 332 ~~~vr~~~~~~l~~l~~~~~~~~---~~~~l~~~l~----~~l~d~--~~~vr~~a~~~l~~l~~~---~~~-------- 391 (530)
+...+..+.++++.++...+.+. +...+++.+. ..++.. +..-+......++.++.. ++.
T Consensus 599 ~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~ 678 (971)
T 2x1g_F 599 KNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATD 678 (971)
T ss_dssp CHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC--------
T ss_pred ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCccccc
Confidence 56889999999999887665222 2333333333 333333 344455555555555433 321
Q ss_pred -------hHHHhhHHHHHHHHhcC--CChHHHHHHHHHHHHHHhhhChhh--HHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q 009632 392 -------DLLSQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKVYSIRDAAANNL 460 (530)
Q Consensus 392 -------~~~~~~l~~~l~~~~~~--~~~~~R~~~~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~d~~~~Vr~~a~~~l 460 (530)
..+.+.++|.+...+.+ .+..+...++.+++.++..+|.++ +...+++.+...+..... ..++..+
T Consensus 679 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~---~~~l~l~ 755 (971)
T 2x1g_F 679 QPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRCC---APTLEIS 755 (971)
T ss_dssp -----CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC--CC---HHHHHHH
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCCc---hHHHHHH
Confidence 11235677777766643 356899999999999998887554 456667777666654322 3578888
Q ss_pred HHHHHHhChhH-----Hh---hhhHHHHHhhccC-------CChHHHHHHHHHHHHHhhhcChHHH-----HhhHHHHHH
Q 009632 461 KRLAEEFGPEW-----AM---QHITPQVLEMINN-------PHYLYRMTILRAISLLAPVMGSEIT-----CSRLLPVVI 520 (530)
Q Consensus 461 ~~l~~~~~~~~-----~~---~~i~~~l~~~~~d-------~~~~vr~~a~~~l~~i~~~~~~~~~-----~~~~~p~l~ 520 (530)
+.++..+|.+. .. ..+...+..+++. .+.+++..+...+..+....+...+ ...+++...
T Consensus 756 ~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~~~l~~i~~~~~ 835 (971)
T 2x1g_F 756 KTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKTLAYDRLVFYAQ 835 (971)
T ss_dssp HHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCTTSCHHHHHHHHH
T ss_pred HHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHH
Confidence 88888887631 11 2222333333322 3678999999999999887665444 455555554
Q ss_pred hhc
Q 009632 521 NAS 523 (530)
Q Consensus 521 ~~l 523 (530)
..+
T Consensus 836 ~~l 838 (971)
T 2x1g_F 836 RGM 838 (971)
T ss_dssp HHH
T ss_pred HHc
Confidence 444
No 51
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.64 E-value=4.7e-12 Score=136.96 Aligned_cols=480 Identities=11% Similarity=0.069 Sum_probs=295.0
Q ss_pred ChhHHHHHHHhhcHHHHHHh----hChH---hhhhccccccccccCCchHHHHHHHHHHhcccccCCCccchhcchhHHH
Q 009632 20 NDDIQLRLNSIRRLSTIARA----LGEE---RTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLE 92 (530)
Q Consensus 20 ~~~~~~R~~a~~~l~~~~~~----~~~~---~~~~~l~~~l~~~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~ 92 (530)
+.+...|..|...|...... ++++ .+++.+++.+.+..++.+.+|..++.++..+++.-. ++.|+.+++.+.
T Consensus 69 ~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~-p~~Wp~~l~~l~ 147 (963)
T 2x19_B 69 DKVPEIQYFGASALHIKISRYWSDIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMM-PDAWPCAVADMV 147 (963)
T ss_dssp TSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHT-TTTSTTHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHhCHHhCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhC-ccccchHHHHHH
Confidence 67888999999999886542 2222 234455565554333468899999999998887533 334777777777
Q ss_pred hhhcc-----cchHHHHHHHHHHHHHHhhcChh---------------hhhhhHHHHHHHHhcCCcc--chhHHHHhHhh
Q 009632 93 TLCTV-----EETCVRDKAVESLCRIGSQMRES---------------DLVDWYIPLVKRLAAGEWF--TARVSACGLFH 150 (530)
Q Consensus 93 ~l~~d-----~~~~vR~~a~~~l~~l~~~~~~~---------------~~~~~l~~~l~~l~~~~~~--~~r~~~~~~l~ 150 (530)
..++. ++...+..++..|..+.+..... ...+.+.+++.....+... .++..+..++.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~ 227 (963)
T 2x19_B 148 RLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFS 227 (963)
T ss_dssp HHHCC------CHHHHHHHHHHHHHHHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHH
T ss_pred HHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 76654 35668889999999888643111 1123356666666655422 25666666665
Q ss_pred hhcCCCChH--HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcch---hhHHHHHHHHHHh-------hcCCchhH
Q 009632 151 IAYPSAPDI--LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA---HLKTDIMSIFEDL-------TQDDQDSV 218 (530)
Q Consensus 151 ~l~~~~~~~--~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~-------~~d~~~~v 218 (530)
.... .+.. ....+++.+...+. ++++|..+++++..+...-.+. .....+++.+... ..+.+...
T Consensus 228 ~wi~-~~~~~~~~~~ll~~l~~~l~--~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~ 304 (963)
T 2x19_B 228 SWVQ-LEVPLQDCEALIQAAFAALQ--DSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMET 304 (963)
T ss_dssp HHHT-SSCCGGGTHHHHHHHHHHTT--STTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHH
T ss_pred HHHc-CCCCcccchHHHHHHHHHhC--CchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHH
Confidence 4444 3322 23777888887774 6889999999999998753322 1222333333322 22333344
Q ss_pred HHHHHHHHHHHhhhcCc--------hhhhhccHHHHHHhcCC-----CCHHHHHHHHHHHHHHHHHhCC------c----
Q 009632 219 RLLAVEGCAALGKLLEP--------QDCVAHILPVIVNFSQD-----KSWRVRYMVANQLYELCEAVGP------E---- 275 (530)
Q Consensus 219 r~~a~~~l~~l~~~~~~--------~~~~~~~~~~l~~~~~d-----~~~~vr~~~~~~l~~l~~~~~~------~---- 275 (530)
.....+.+..+++.... ......+++.+.....+ .++.++..++..+..+++.... .
T Consensus 305 ~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~ 384 (963)
T 2x19_B 305 SHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQ 384 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHcCccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHH
Confidence 44444555555543211 11122345555544443 2344565566655555552210 0
Q ss_pred ---ccccchHHHHHHhcCCCc---------------HHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhc----cCCcH
Q 009632 276 ---PTRMDLVPAYVRLLRDNE---------------AEVRIAAAGKVTKFCRILNPELAIQHILPCVKELS----SDSSQ 333 (530)
Q Consensus 276 ---~~~~~l~~~l~~~l~d~~---------------~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~----~d~~~ 333 (530)
.....+++.++..+..++ .+.|.++...+..++...+.+ ..+.+++.+...+ .+.+|
T Consensus 385 ~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~-~l~~~~~~l~~~l~~~~~~~~w 463 (963)
T 2x19_B 385 VYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAE-LLSNLYDKLGRLLTSSEEPYSW 463 (963)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHH-HHHHHHHHHHHHHHTCCCSCCH
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHccHH-HHHHHHHHHHHHHHhcCCCCch
Confidence 112234444444442111 123677777888888777744 3456666666655 67899
Q ss_pred HHHHHHHHHHHhhccccCH--HHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh-HHHhhHHHHHHHHhcCCC
Q 009632 334 HVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID-LLSQSLLPAIVELAEDRH 410 (530)
Q Consensus 334 ~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~~~~~~ 410 (530)
+.|.+++.+++.++..+.. ..+...+++.+.. +.++.+.||..++.+++.+...++.. .+.+.+++.+...+.+
T Consensus 464 ~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~-l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~-- 540 (963)
T 2x19_B 464 QHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPR-ISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN-- 540 (963)
T ss_dssp HHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGG-SCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHh-CCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--
Confidence 9999999999999887653 2345556664443 34567889999999999999877643 3457788888888766
Q ss_pred hHHHHHHHHHHHHHHhhhChhh--HHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHHHHhCh-hH--HhhhhHHHHHhh
Q 009632 411 WRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQD--KVYSIRDAAANNLKRLAEEFGP-EW--AMQHITPQVLEM 483 (530)
Q Consensus 411 ~~~R~~~~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~d--~~~~Vr~~a~~~l~~l~~~~~~-~~--~~~~i~~~l~~~ 483 (530)
..+|..|+.++..++..++... +.+.++..+..++.. -....|..+.++++.++...+. .. ..+.+++.+...
T Consensus 541 ~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~ 620 (963)
T 2x19_B 541 PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQ 620 (963)
T ss_dssp GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 7899999999999998766432 346677777777663 3568999999999999977662 21 113344433332
Q ss_pred c----cC-CChHH---HHHHHHHHHHHhhhcC
Q 009632 484 I----NN-PHYLY---RMTILRAISLLAPVMG 507 (530)
Q Consensus 484 ~----~d-~~~~v---r~~a~~~l~~i~~~~~ 507 (530)
+ +. .+.+. +..++.+++.+...++
T Consensus 621 l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~ 652 (963)
T 2x19_B 621 LEKLAEEIPNPSNKLAIVHILGLLSNLFTTLD 652 (963)
T ss_dssp HHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 2 22 23333 3466777777776654
No 52
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.64 E-value=2.5e-14 Score=124.17 Aligned_cols=185 Identities=21% Similarity=0.217 Sum_probs=129.4
Q ss_pred HHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCccccc
Q 009632 200 KTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM 279 (530)
Q Consensus 200 ~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~ 279 (530)
.+...+.+++.+.|+++.+|..|+..++.+.. ...++.+...++|+++.+|..++..++.+. ..
T Consensus 12 ~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~--------~~ 75 (201)
T 3ltj_A 12 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIG--------DE 75 (201)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--------CG
T ss_pred CCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC--------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC--------CH
Confidence 45567778888888888888888888877653 235667777777888888888888777763 23
Q ss_pred chHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhH
Q 009632 280 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQL 359 (530)
Q Consensus 280 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l 359 (530)
..++.+...+.|+++.||..++.+|+.+.. +..++.+..++.|+++.+|..++..++.+.. ...
T Consensus 76 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~ 139 (201)
T 3ltj_A 76 RAVEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERA 139 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--------GGG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHH
Confidence 456777778888888888888888877642 2345666666677777788777777777642 234
Q ss_pred HHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 009632 360 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLL 424 (530)
Q Consensus 360 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l 424 (530)
++.+..+++|+++.||..++.+++.+.. +..++.+..+++++++.+|..++.+++.+
T Consensus 140 ~~~L~~~l~d~~~~vr~~A~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 140 VEPLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 5667777777777777777777776522 34556666666677777777777777654
No 53
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.56 E-value=3.4e-13 Score=121.62 Aligned_cols=227 Identities=12% Similarity=0.080 Sum_probs=168.8
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH---HHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCH---HHH
Q 009632 282 VPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DAT 355 (530)
Q Consensus 282 ~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~ 355 (530)
+|.+++++.++++++|..|+.++..++...+.. ......+|.+.+++++.+..+|..++..+..++..... ...
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 83 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV 83 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 566777777777788888888887776543211 12235677777788888888888888888888754211 112
Q ss_pred HHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch---hHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCh--
Q 009632 356 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV-- 430 (530)
Q Consensus 356 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~-- 430 (530)
....+|.+..+++++++.+|..++.++..++..... .......+|.+.+++.++++.+|..++.+++.++.....
T Consensus 84 ~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~ 163 (252)
T 4hxt_A 84 DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI 163 (252)
T ss_dssp HTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 335788899999999999999999999998843211 112246789999999999999999999999999763221
Q ss_pred -hhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCh---hHHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhc
Q 009632 431 -GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVM 506 (530)
Q Consensus 431 -~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~ 506 (530)
.......+|.+..++.++++.+|..|+.+++.++..... ......+++.+.+++++++..+|..|+++++++....
T Consensus 164 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 164 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG 243 (252)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCC
Confidence 122345889999999999999999999999999852211 1223567899999999999999999999999998765
Q ss_pred Ch
Q 009632 507 GS 508 (530)
Q Consensus 507 ~~ 508 (530)
+.
T Consensus 244 ~~ 245 (252)
T 4hxt_A 244 WL 245 (252)
T ss_dssp BC
T ss_pred Cc
Confidence 54
No 54
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.56 E-value=8.3e-13 Score=129.45 Aligned_cols=337 Identities=10% Similarity=0.055 Sum_probs=194.7
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHHHHhhhcc---hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc---hhhh
Q 009632 166 SIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP---QDCV 239 (530)
Q Consensus 166 ~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~ 239 (530)
|.+..++.++++.++..|+.+|..++..-++ .......+|.+.+++.++++.++..|+.+|..++..-++ ....
T Consensus 5 ~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~ 84 (457)
T 1xm9_A 5 PKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRR 84 (457)
T ss_dssp HHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3344444455555666666666655532211 112233556666666665566666666666666542111 1112
Q ss_pred hccHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhCC-c-ccccchHHHHHHhc--------CC--------CcHHHHHHH
Q 009632 240 AHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGP-E-PTRMDLVPAYVRLL--------RD--------NEAEVRIAA 300 (530)
Q Consensus 240 ~~~~~~l~~~~~-d~~~~vr~~~~~~l~~l~~~~~~-~-~~~~~l~~~l~~~l--------~d--------~~~~vr~~a 300 (530)
...+|.+.+++. +.+..++..++.+|.+++..-.. . ... ..+|.+++++ .+ .++++...|
T Consensus 85 ~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a 163 (457)
T 1xm9_A 85 QNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNA 163 (457)
T ss_dssp TTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHH
T ss_pred cCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHH
Confidence 335566666665 55566666666666666543100 0 112 4556666666 11 134455566
Q ss_pred HHHHHHHHHhhCHH---HHHh--hhhHhHhHhccC------CcHHHHHHHHHHHHhhccc--------------------
Q 009632 301 AGKVTKFCRILNPE---LAIQ--HILPCVKELSSD------SSQHVRSALASVIMGMAPL-------------------- 349 (530)
Q Consensus 301 ~~~l~~~~~~~~~~---~~~~--~l~~~l~~~~~d------~~~~vr~~~~~~l~~l~~~-------------------- 349 (530)
+.+|..++.. ++ .+.+ ..+|.+..++.+ .+.+++..++..+..++..
T Consensus 164 ~~aL~nLs~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~ 241 (457)
T 1xm9_A 164 TGCLRNLSSA--DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241 (457)
T ss_dssp HHHHHHHTTS--HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred HHHHHHHccC--HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccccc
Confidence 6666666643 21 1111 334444444332 2222333333222222100
Q ss_pred --------c------------------------CH-HHHHHhHHHHHHHhhcCC-ChHHHHHHHHhhHHhhhhhch----
Q 009632 350 --------L------------------------GK-DATIEQLLPIFLSLLKDE-FPDVRLNIISKLDQVNQVIGI---- 391 (530)
Q Consensus 350 --------~------------------------~~-~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~---- 391 (530)
+ |. ..+....++.+..+|.+. ++.+++.++.++.+++..-+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~ 321 (457)
T 1xm9_A 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG 321 (457)
T ss_dssp ------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHH
T ss_pred ccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHH
Confidence 0 00 012234567777777654 689999999999999753221
Q ss_pred ---hHH-HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCh-hhHHHHHHHHHHHHhcCCc------HHHHHHHHHHH
Q 009632 392 ---DLL-SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV-GFFDDKLGALCMQWLQDKV------YSIRDAAANNL 460 (530)
Q Consensus 392 ---~~~-~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~-~~~~~~~~~~l~~~l~d~~------~~Vr~~a~~~l 460 (530)
..+ ....+|.+.+++.+++..+|..|+.++..++..-.. ..+....+|.+.+++...+ .++...++.++
T Consensus 322 ~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l 401 (457)
T 1xm9_A 322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTV 401 (457)
T ss_dssp HHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHH
Confidence 112 146789999999999999999999999999874322 2234568888999998753 46888999999
Q ss_pred HHHHHHhChh---HHhhhhHHHHHhhccCC-ChHHHHHHHHHHHHHhhh
Q 009632 461 KRLAEEFGPE---WAMQHITPQVLEMINNP-HYLYRMTILRAISLLAPV 505 (530)
Q Consensus 461 ~~l~~~~~~~---~~~~~i~~~l~~~~~d~-~~~vr~~a~~~l~~i~~~ 505 (530)
+.+...-... ......++.+.+++.++ +..++..|.+.+.++...
T Consensus 402 ~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~ 450 (457)
T 1xm9_A 402 RNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSS 450 (457)
T ss_dssp HHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSS
T ss_pred HHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcc
Confidence 8887543221 11256789999999988 999999999999988753
No 55
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.56 E-value=1.8e-13 Score=121.75 Aligned_cols=162 Identities=14% Similarity=0.202 Sum_probs=136.4
Q ss_pred HHHHHHHHhhc-CCCChhHHHHHHHHHHHHHhhhc-c--h-hhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCch
Q 009632 162 TELRSIYTQLC-QDDMPMVRRSAASNLGKFAATVE-P--A-HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ 236 (530)
Q Consensus 162 ~~l~~~l~~l~-~d~~~~vR~~a~~~l~~l~~~~~-~--~-~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~ 236 (530)
.+++..+...+ +|++..||..++.+++.++..++ + . .+...++|.+.+.++|....||.++..++..++...++.
T Consensus 59 ~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~ 138 (249)
T 2qk1_A 59 SNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPL 138 (249)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcccc
Confidence 35566777777 79999999999999999999887 4 3 566778999999999999999999999999999988542
Q ss_pred h---hhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCc-----ccc-cchHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 009632 237 D---CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE-----PTR-MDLVPAYVRLLRDNEAEVRIAAAGKVTKF 307 (530)
Q Consensus 237 ~---~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~-----~~~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~~ 307 (530)
. +.+.+++.+...+++++|.+|..++.+|+.+....+.. .+. ..++|.+.+++.|++++||.+|..+++.+
T Consensus 139 ~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i 218 (249)
T 2qk1_A 139 ASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAIL 218 (249)
T ss_dssp CTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 1 24568888889999999999999999999999887742 235 78999999999999999999999999999
Q ss_pred HHhhCHHHHHhhhhHhHhHh
Q 009632 308 CRILNPELAIQHILPCVKEL 327 (530)
Q Consensus 308 ~~~~~~~~~~~~l~~~l~~~ 327 (530)
+..+|.+. +.|.+..+
T Consensus 219 ~~~vG~~~----~~p~l~~L 234 (249)
T 2qk1_A 219 IKIFGMNT----FVKTLEHL 234 (249)
T ss_dssp HHHHCSGG----GHHHHHHS
T ss_pred HHHhCHHH----HHHHHHHH
Confidence 99999754 45555444
No 56
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.55 E-value=1.4e-13 Score=122.42 Aligned_cols=193 Identities=11% Similarity=0.185 Sum_probs=153.1
Q ss_pred HHHHHHHHHhhcCCchhHHHHHHHHHHH-HhhhcCc----hhhhhccHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHhC-
Q 009632 201 TDIMSIFEDLTQDDQDSVRLLAVEGCAA-LGKLLEP----QDCVAHILPVIVNFS-QDKSWRVRYMVANQLYELCEAVG- 273 (530)
Q Consensus 201 ~~l~~~l~~~~~d~~~~vr~~a~~~l~~-l~~~~~~----~~~~~~~~~~l~~~~-~d~~~~vr~~~~~~l~~l~~~~~- 273 (530)
+.+-+-|.+.+.+.++.-|..|+..+.. +.+..++ ..-...++..+...+ +|.+..||..++.+++.++..++
T Consensus 15 ~kl~~~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~ 94 (249)
T 2qk1_A 15 DKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKT 94 (249)
T ss_dssp GGSCTTHHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCT
T ss_pred hhCChhHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc
Confidence 3344455666778888888888888888 7654222 111234677777888 79999999999999999999988
Q ss_pred Ccc---cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHH---HHhhhhHhHhHhccCCcHHHHHHHHHHHHhhc
Q 009632 274 PEP---TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL---AIQHILPCVKELSSDSSQHVRSALASVIMGMA 347 (530)
Q Consensus 274 ~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~---~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~ 347 (530)
+.+ +...++|.++..++|..+.||.++..++..++...++.. ..+.+++.+...+++++|++|..++.++..++
T Consensus 95 ~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~ 174 (249)
T 2qk1_A 95 PGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASM 174 (249)
T ss_dssp TTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 543 345689999999999999999999999999999874321 12456777777788999999999999999998
Q ss_pred cccCH--H---HHH-HhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhH
Q 009632 348 PLLGK--D---ATI-EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL 393 (530)
Q Consensus 348 ~~~~~--~---~~~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 393 (530)
...+. . .+. +.++|.+..++.|.+..||.+|..+++.++..+|.+.
T Consensus 175 ~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~ 226 (249)
T 2qk1_A 175 KEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNT 226 (249)
T ss_dssp HHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGG
T ss_pred HHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHH
Confidence 77763 2 356 7899999999999999999999999999999999643
No 57
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.54 E-value=4.7e-13 Score=120.72 Aligned_cols=225 Identities=14% Similarity=0.108 Sum_probs=168.2
Q ss_pred chHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH---HHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCH--H-
Q 009632 280 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP---ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK--D- 353 (530)
Q Consensus 280 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~- 353 (530)
.-.+.+...+.++++++|..|+.++..+...... .......+|.+.+++++.++.+|..++..+..++..... .
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 3467777888888888888888888655443111 122345678888888888888898888888888753211 1
Q ss_pred HHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh---HHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCh
Q 009632 354 ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV 430 (530)
Q Consensus 354 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~ 430 (530)
......+|.+..+++++++.+|..++.++++++...... ......+|.+.+++.++++.+|..++.+++.++.....
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 171 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 122347899999999999999999999999987653322 22346889999999999999999999999999853221
Q ss_pred ---hhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCh---hHHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhh
Q 009632 431 ---GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAP 504 (530)
Q Consensus 431 ---~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~ 504 (530)
.......+|.+..++.++++.||..|+.+|+.++..... ......+++.+.+++.+++..+|..|++++++++.
T Consensus 172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 112345789999999999999999999999999742111 12235689999999999999999999999998764
No 58
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.53 E-value=1.4e-11 Score=121.58 Aligned_cols=149 Identities=13% Similarity=0.051 Sum_probs=114.1
Q ss_pred HhHHHHHHHhhcC-CChHHHHHHHHhhHHhhhhhch--h----HH-HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhh
Q 009632 357 EQLLPIFLSLLKD-EFPDVRLNIISKLDQVNQVIGI--D----LL-SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL 428 (530)
Q Consensus 357 ~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~--~----~~-~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~ 428 (530)
...++.++.+|++ .++.+++.|+.+|.+++..-+. . .+ ....+|.|.+++.+++..++..++.+|+.++...
T Consensus 307 ~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~ 386 (584)
T 3l6x_A 307 PEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDA 386 (584)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh
Confidence 3567888888864 5789999999999999743211 1 11 1356999999999999999999999999998865
Q ss_pred Ch-hhHHHHHHHHHHHHhcCC--------cHHHHHHHHHHHHHHHHHhCh---hHHhhhhHHHHHhhccCC--ChHHHHH
Q 009632 429 GV-GFFDDKLGALCMQWLQDK--------VYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNP--HYLYRMT 494 (530)
Q Consensus 429 ~~-~~~~~~~~~~l~~~l~d~--------~~~Vr~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~~~~d~--~~~vr~~ 494 (530)
.. ..+....+|.+..+|.+. ..+++..|+.+++.++..-.. .......+|.|..++.+. +..++..
T Consensus 387 ~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~ 466 (584)
T 3l6x_A 387 RNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRA 466 (584)
T ss_dssp SCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHH
T ss_pred hHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHH
Confidence 43 335577899999999875 367899999999988743111 122356799999998875 7789999
Q ss_pred HHHHHHHHhhh
Q 009632 495 ILRAISLLAPV 505 (530)
Q Consensus 495 a~~~l~~i~~~ 505 (530)
|..++.+++..
T Consensus 467 Aa~vL~nl~~~ 477 (584)
T 3l6x_A 467 AALVLQTIWGY 477 (584)
T ss_dssp HHHHHHHHHTS
T ss_pred HHHHHHHHHcC
Confidence 99999998754
No 59
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.53 E-value=1.1e-10 Score=116.91 Aligned_cols=408 Identities=11% Similarity=0.067 Sum_probs=258.7
Q ss_pred hhHHHhhh-cccchHHHHHHHHHHHHHHhhcC-hhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCC--ChHHHHH
Q 009632 88 LPPLETLC-TVEETCVRDKAVESLCRIGSQMR-ESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSA--PDILKTE 163 (530)
Q Consensus 88 ~~~l~~l~-~d~~~~vR~~a~~~l~~l~~~~~-~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~--~~~~~~~ 163 (530)
.+.+.... ..++..+..++++.+...|..-. .+.+.....+.+..+.++ ..+|..+...+..++... ......+
T Consensus 257 ~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si~~ 334 (778)
T 3opb_A 257 SKLFKKRVFEEQDLQFTKELLRLLSSACIDETMRTYITENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINLKQ 334 (778)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCHHH
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHhCCcHHHHHHHHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcHHH
Confidence 44454444 33455666666666666554211 122344466777777765 467777777777665432 2224567
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc-hhh--HHHHHHHHHHhhcC-CchhHHHHHHHHHHHHhhhcCchh--
Q 009632 164 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP-AHL--KTDIMSIFEDLTQD-DQDSVRLLAVEGCAALGKLLEPQD-- 237 (530)
Q Consensus 164 l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~-~~~--~~~l~~~l~~~~~d-~~~~vr~~a~~~l~~l~~~~~~~~-- 237 (530)
+.+.+.+++.+++...|+.|++.|+.+...-.- +.+ .+.++..+.+++.+ ++..+.-.++..+.++....+...
T Consensus 335 La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e 414 (778)
T 3opb_A 335 LSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXX 414 (778)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCC
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchh
Confidence 888898888877666799999999998643211 111 13467788888875 556677788888888887654311
Q ss_pred --hhhccHHHHHHhcC----CCCHHHHHHHHHHHHH-HHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHh
Q 009632 238 --CVAHILPVIVNFSQ----DKSWRVRYMVANQLYE-LCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI 310 (530)
Q Consensus 238 --~~~~~~~~l~~~~~----d~~~~vr~~~~~~l~~-l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 310 (530)
-..++.++...-.- +.+.. .... .+.. -... ......+|.+..+++.+++.+|..+++++..++..
T Consensus 415 ~~~l~~Lk~~A~~~~p~~~~~d~~~--~~~~-~v~~~~~~~----l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d 487 (778)
T 3opb_A 415 XXXXXXXXXXXXXXXPAADKVGAEK--AAKE-DILLFNEKY----ILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS 487 (778)
T ss_dssp CC------------------CCTHH--HHHH-HHHHHHHHH----TTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS
T ss_pred hhhhhhhhhhccccCcccCcccccc--cchH-HHHHHHHHH----HHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 11222222221100 01110 0000 0111 1111 11345889999999999999999999999999865
Q ss_pred hCHH--HHHhhhhHhHhHhccCCcHH---HHHHHHHHHHhhccccCHHHHH-----HhHHHHHHHhhcC-CCh-------
Q 009632 311 LNPE--LAIQHILPCVKELSSDSSQH---VRSALASVIMGMAPLLGKDATI-----EQLLPIFLSLLKD-EFP------- 372 (530)
Q Consensus 311 ~~~~--~~~~~l~~~l~~~~~d~~~~---vr~~~~~~l~~l~~~~~~~~~~-----~~l~~~l~~~l~d-~~~------- 372 (530)
-... ...+..++.+..++.+.... +|..++.++..+.-...+.... ...+|.+..+|.. +..
T Consensus 488 ~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~ 567 (778)
T 3opb_A 488 KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHN 567 (778)
T ss_dssp GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---
T ss_pred HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccc
Confidence 3222 23345567777776655433 8889999998876443332211 1567888899882 221
Q ss_pred ------HHHHHHHHhhHHhhhhhch------hHHHh--hHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhC---hhhHH-
Q 009632 373 ------DVRLNIISKLDQVNQVIGI------DLLSQ--SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFD- 434 (530)
Q Consensus 373 ------~vr~~a~~~l~~l~~~~~~------~~~~~--~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~---~~~~~- 434 (530)
--+..|+.+|.+++..-+. ..+.. ..+|.+.+++.+.+..+|.+|++++.+++..-. .+++.
T Consensus 568 ~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~ 647 (778)
T 3opb_A 568 DEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNL 647 (778)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCC
T ss_pred cccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhh
Confidence 1266788888888775421 11222 588999999999999999999999999986443 13331
Q ss_pred -----HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCh---hHHh-hhhHHHHHhhccC--CChHHHHHHHHHHHHHh
Q 009632 435 -----DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAM-QHITPQVLEMINN--PHYLYRMTILRAISLLA 503 (530)
Q Consensus 435 -----~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~---~~~~-~~i~~~l~~~~~d--~~~~vr~~a~~~l~~i~ 503 (530)
..=++.+..++...+..+|.+|+.+++.+...... .... ...++.+..++.+ ++..+|..++.++.+++
T Consensus 648 ~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~ 727 (778)
T 3opb_A 648 ENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLF 727 (778)
T ss_dssp SSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred cCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 12378899999999999999999999988654322 1111 3577788888888 89999999999999999
Q ss_pred h
Q 009632 504 P 504 (530)
Q Consensus 504 ~ 504 (530)
.
T Consensus 728 ~ 728 (778)
T 3opb_A 728 E 728 (778)
T ss_dssp T
T ss_pred H
Confidence 7
No 60
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.52 E-value=1.1e-12 Score=118.17 Aligned_cols=224 Identities=14% Similarity=0.115 Sum_probs=152.0
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc---hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc---hhh
Q 009632 165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP---QDC 238 (530)
Q Consensus 165 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~~ 238 (530)
++.+..++.++++.+|..++.+|..++...+. .......++.+.+++.++++.+|..++.++..++..-+. ...
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 83 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV 83 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 56777888888899999999999998875432 222345788999999999999999999999998864221 112
Q ss_pred hhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC---CcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH-
Q 009632 239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE- 314 (530)
Q Consensus 239 ~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~- 314 (530)
....+|.+..++++.++.+|..++.+|+.++.... ........+|.+.+++.++++++|..++.++..++...+..
T Consensus 84 ~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~ 163 (252)
T 4hxt_A 84 DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI 163 (252)
T ss_dssp HTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 33578888888888889999999999988874211 11122357888888888888889999988888887532111
Q ss_pred --HHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCH---HHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhh
Q 009632 315 --LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 388 (530)
Q Consensus 315 --~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 388 (530)
......+|.+..++.++++.+|..++..+..++..... .......++.+..+++++++.+|..|+.++.++...
T Consensus 164 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 242 (252)
T 4hxt_A 164 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSG 242 (252)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcC
Confidence 12234566677777777777777777777777642111 011223455555566655566666666666555543
No 61
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.51 E-value=1.5e-11 Score=130.78 Aligned_cols=293 Identities=12% Similarity=0.090 Sum_probs=193.4
Q ss_pred CCchhHHHHHHHHHHHHhhhcCchhh-hhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchH------HHH
Q 009632 213 DDQDSVRLLAVEGCAALGKLLEPQDC-VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLV------PAY 285 (530)
Q Consensus 213 d~~~~vr~~a~~~l~~l~~~~~~~~~-~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~------~~l 285 (530)
..++.++..+++++.....-.+...+ .+.+++.+...+.+ +.+|..++++|..+...-.+......++ +.+
T Consensus 204 ~~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~ 281 (980)
T 3ibv_A 204 AKNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFF 281 (980)
T ss_dssp TTCHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHH
Confidence 35678889999999999886655322 24577777777776 6899999999999887533211111122 111
Q ss_pred HHhcC-CCcHHHHHHHHHHHHHHHHh------hC----HH------HHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhcc
Q 009632 286 VRLLR-DNEAEVRIAAAGKVTKFCRI------LN----PE------LAIQHILPCVKELSSDSSQHVRSALASVIMGMAP 348 (530)
Q Consensus 286 ~~~l~-d~~~~vr~~a~~~l~~~~~~------~~----~~------~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~ 348 (530)
..+.. +.+.++.+...+.+..++.. .+ .+ .....+++.+..+..++++.+-..++..+..+..
T Consensus 282 ~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~ 361 (980)
T 3ibv_A 282 SKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLV 361 (980)
T ss_dssp CC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHH
T ss_pred HHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHH
Confidence 12222 45667766555555443322 11 00 2345678888888888888888877777766553
Q ss_pred cc---------CH--HHHHHhHHHHHHHhhc---C----C----C-----hHHHHHHHHhhHHhhhhhchhHHHh----h
Q 009632 349 LL---------GK--DATIEQLLPIFLSLLK---D----E----F-----PDVRLNIISKLDQVNQVIGIDLLSQ----S 397 (530)
Q Consensus 349 ~~---------~~--~~~~~~l~~~l~~~l~---d----~----~-----~~vr~~a~~~l~~l~~~~~~~~~~~----~ 397 (530)
.. .. ..+...+++.+..-++ | + + .+.|.... .+...+..+|++...+ .
T Consensus 362 ~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~ 440 (980)
T 3ibv_A 362 SLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSYMYSA 440 (980)
T ss_dssp HHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHHHHHH
Confidence 21 11 1334455555555443 1 1 1 14677776 7778888888877666 5
Q ss_pred HHHHHHHHhc---CCChHHHHHHHHHHHHHHhhhChhh--------HHHHHHHHHHHHhc-----CCcHHHHHHHHHHHH
Q 009632 398 LLPAIVELAE---DRHWRVRLAIIEYIPLLASQLGVGF--------FDDKLGALCMQWLQ-----DKVYSIRDAAANNLK 461 (530)
Q Consensus 398 l~~~l~~~~~---~~~~~~R~~~~~~l~~l~~~~~~~~--------~~~~~~~~l~~~l~-----d~~~~Vr~~a~~~l~ 461 (530)
+.+.+.+.+. +.+|+.+++++.+++.+++.+.... ..+.+++++..++. ++.+.||..++.+++
T Consensus 441 i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~ 520 (980)
T 3ibv_A 441 ITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILV 520 (980)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHH
Confidence 6666655552 4579999999999999998765311 22357788877765 889999999999999
Q ss_pred HHHHHhChh-HHhhhhHHHHHh--hccCCChHHHHHHHHHHHHHhhhcCh
Q 009632 462 RLAEEFGPE-WAMQHITPQVLE--MINNPHYLYRMTILRAISLLAPVMGS 508 (530)
Q Consensus 462 ~l~~~~~~~-~~~~~i~~~l~~--~~~d~~~~vr~~a~~~l~~i~~~~~~ 508 (530)
.....+... .....+++.+.. .+.+++.+||..|+.++.++++....
T Consensus 521 rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~ 570 (980)
T 3ibv_A 521 RYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK 570 (980)
T ss_dssp HTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhH
Confidence 998887532 122445555656 66688999999999999999998765
No 62
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.51 E-value=3.2e-10 Score=120.71 Aligned_cols=494 Identities=10% Similarity=0.052 Sum_probs=305.1
Q ss_pred CcCcHHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhccccccccccCCchHHHHHHHHHHhccccc----CCCcc
Q 009632 7 PLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPY----VGGVE 82 (530)
Q Consensus 7 ~~~~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~~~~~l~~~~~~----~~~~~ 82 (530)
++..+..+++.+.+++...|..|-+.|.++-.. | ..+..+...+. .+.++.+|..++..|.+.++. +..++
T Consensus 14 dv~~Le~av~~ly~p~~~~r~~A~~~L~~~q~s--p-~aw~~~~~iL~--~s~~~~vR~faa~~Lk~~I~~~W~~L~~e~ 88 (1023)
T 4hat_C 14 DIALLDQVVSTFYQGSGVQQKQAQEILTKFQDN--P-DAWQKADQILQ--FSTNPQSKFIALSILDKLITRKWKLLPNDH 88 (1023)
T ss_dssp CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC--T-TGGGGHHHHHH--HCCCHHHHHHHHHHHHHHHHHHGGGSCHHH
T ss_pred CHHHHHHHHHHHhCCChHHHHHHHHHHHHHHcC--c-cHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHhhhhcCCHHH
Confidence 455677888888888888999999998876443 2 23333333332 245789999999999766552 22111
Q ss_pred ---chhcchhHHHhhhccc-----chHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcC
Q 009632 83 ---HAHVLLPPLETLCTVE-----ETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYP 154 (530)
Q Consensus 83 ---~~~~l~~~l~~l~~d~-----~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~ 154 (530)
....++..+....+++ ...+|.+.+.++..+++..-++. ++.+++.+..+.+... ........++..+.+
T Consensus 89 ~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~-Wp~~l~dL~~~l~~~~-~~~~~~L~iL~~L~E 166 (1023)
T 4hat_C 89 RIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQN-WPEFIPELIGSSSSSV-NVCENNMIVLKLLSE 166 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTT-CTTHHHHHHHHTTTCH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhh-chHHHHHHHHHhcCCH-HHHHHHHHHHHHHHH
Confidence 2345666665554433 46788889999999988754432 4455666655554332 233333444433221
Q ss_pred --------CCChH-----------HHHHHHHHHHhhcC-CCChhHHHHHHHHHHHHHhhhcchh-hHHHHHHHHH-Hhhc
Q 009632 155 --------SAPDI-----------LKTELRSIYTQLCQ-DDMPMVRRSAASNLGKFAATVEPAH-LKTDIMSIFE-DLTQ 212 (530)
Q Consensus 155 --------~~~~~-----------~~~~l~~~l~~l~~-d~~~~vR~~a~~~l~~l~~~~~~~~-~~~~l~~~l~-~~~~ 212 (530)
..+.. ..+.+++.+...++ ..++.+...++++++.+...++-.. ..+.+++.+. +++.
T Consensus 167 EV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~ 246 (1023)
T 4hat_C 167 EVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT 246 (1023)
T ss_dssp HHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHcC
Confidence 12211 22445555555553 4577888999999999988766532 2345777777 7775
Q ss_pred CCchhHHHHHHHHHHHHhhh-c-Cch-hhhh-------ccHHHH-HHh-------------cCCCCHHHHHHHHHHHHHH
Q 009632 213 DDQDSVRLLAVEGCAALGKL-L-EPQ-DCVA-------HILPVI-VNF-------------SQDKSWRVRYMVANQLYEL 268 (530)
Q Consensus 213 d~~~~vr~~a~~~l~~l~~~-~-~~~-~~~~-------~~~~~l-~~~-------------~~d~~~~vr~~~~~~l~~l 268 (530)
+ +..|..|++++..+... . ++. .+.+ .+++.+ ..+ .++.+.......+..+..+
T Consensus 247 ~--~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~ 324 (1023)
T 4hat_C 247 S--PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTY 324 (1023)
T ss_dssp S--HHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHH
T ss_pred C--HHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHH
Confidence 4 67999999999999863 3 221 1111 122222 111 1233456666677777777
Q ss_pred HHHhCCcc----cccch----HHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH--------HHHHhhhhHhHhHhcc---
Q 009632 269 CEAVGPEP----TRMDL----VPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP--------ELAIQHILPCVKELSS--- 329 (530)
Q Consensus 269 ~~~~~~~~----~~~~l----~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~--------~~~~~~l~~~l~~~~~--- 329 (530)
++....-. ....+ +..++.....++.++-..++.-...+.+.+-. ..+...+++.+..-+.
T Consensus 325 ~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~ 404 (1023)
T 4hat_C 325 LARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPE 404 (1023)
T ss_dssp HHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCT
T ss_pred HHHHHHHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 66543211 11122 22455555666778877777766666553321 1222334444432211
Q ss_pred ------------------CCcHHHHH-HHHHHHHhhccccCHHHHHHhHHHHHHHhhcC--CChHHHHHHHHhhHHhhhh
Q 009632 330 ------------------DSSQHVRS-ALASVIMGMAPLLGKDATIEQLLPIFLSLLKD--EFPDVRLNIISKLDQVNQV 388 (530)
Q Consensus 330 ------------------d~~~~vr~-~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~ 388 (530)
|++..... ..-..+..++...+ +...+.+.+.+...+.+ .+|..|++++-+++.+.+.
T Consensus 405 e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~-~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~ 483 (1023)
T 4hat_C 405 EVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNV-IDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGT 483 (1023)
T ss_dssp TCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTS
T ss_pred ccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhccCH-HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcC
Confidence 11111111 11133444433333 45667777777777764 5799999999999999887
Q ss_pred hchh---HHHhhHHHHHHHHhc-----CCChHHHHHHHHHHHHHHhhhCh-hhHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 009632 389 IGID---LLSQSLLPAIVELAE-----DRHWRVRLAIIEYIPLLASQLGV-GFFDDKLGALCMQWLQDKVYSIRDAAANN 459 (530)
Q Consensus 389 ~~~~---~~~~~l~~~l~~~~~-----~~~~~~R~~~~~~l~~l~~~~~~-~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~ 459 (530)
...+ .+...++|.+..+.. |+...+|..++.++|..+..+.. ..+...++..++..+.|+.+.|..+|+.+
T Consensus 484 ~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~a 563 (1023)
T 4hat_C 484 MSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDT 563 (1023)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 7654 344677787877765 35567888899999988886642 22456677888888889999999999999
Q ss_pred HHHHHHHhChhHH----------hhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcChHH
Q 009632 460 LKRLAEEFGPEWA----------MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI 510 (530)
Q Consensus 460 l~~l~~~~~~~~~----------~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~~~ 510 (530)
+..+++.++.... .+.++..+.....+-+...+..+.++++.++...+.+.
T Consensus 564 l~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~ 624 (1023)
T 4hat_C 564 FIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVA 624 (1023)
T ss_dssp HHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHH
T ss_pred HHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHh
Confidence 9999998876542 24455555555566677788899999999999988544
No 63
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.50 E-value=1.9e-10 Score=122.46 Aligned_cols=438 Identities=9% Similarity=0.011 Sum_probs=274.5
Q ss_pred CchHHHHHHHHHHhcccccCCCccchhcchhHHHhhhcccchHHHHHHHHHHHHHHhh----cChh---hhhhhHHHHHH
Q 009632 59 DDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQ----MRES---DLVDWYIPLVK 131 (530)
Q Consensus 59 ~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~----~~~~---~~~~~l~~~l~ 131 (530)
++++.|+.|-..|..+-+. ++.+.....+|. .+.++.+|..|+..|...++. ++++ .++..++..+.
T Consensus 28 p~~~~r~~A~~~L~~~q~s---p~aw~~~~~iL~---~s~~~~vR~faa~~Lk~~I~~~W~~L~~e~~~~Ir~~Ll~~l~ 101 (1023)
T 4hat_C 28 GSGVQQKQAQEILTKFQDN---PDAWQKADQILQ---FSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMII 101 (1023)
T ss_dssp CCHHHHHHHHHHHHHHHHC---TTGGGGHHHHHH---HCCCHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHcC---ccHHHHHHHHhc---CCCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHH
Confidence 3345788888888877653 344555544442 345789999999999997773 4443 34556777776
Q ss_pred HHhcCC-----ccchhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc---h------
Q 009632 132 RLAAGE-----WFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---A------ 197 (530)
Q Consensus 132 ~l~~~~-----~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~------ 197 (530)
....++ ...++...+.+++.++...-++.++.+++-+..+++. ++......+..|..+.+-+.. +
T Consensus 102 ~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~~-~~~~~~~~L~iL~~L~EEV~~~~~~~l~~~r 180 (1023)
T 4hat_C 102 SMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSS-SVNVCENNMIVLKLLSEEVFDFSAEQMTQAK 180 (1023)
T ss_dssp HHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHHTSCTTTSCHHH
T ss_pred HhcCCcccccccHHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHhhhccchHHH
Confidence 655443 2445666777777777665555677788888887754 445566666666666554211 0
Q ss_pred ---------hhHHHHHHHHHHhhcC-CchhHHHHHHHHHHHHhhhcCchh-hhhccHHHHH-HhcCCCCHHHHHHHHHHH
Q 009632 198 ---------HLKTDIMSIFEDLTQD-DQDSVRLLAVEGCAALGKLLEPQD-CVAHILPVIV-NFSQDKSWRVRYMVANQL 265 (530)
Q Consensus 198 ---------~~~~~l~~~l~~~~~d-~~~~vr~~a~~~l~~l~~~~~~~~-~~~~~~~~l~-~~~~d~~~~vr~~~~~~l 265 (530)
...+.+++.+.+.+.+ .++.+...+++++..+..-++... ..+.+++.+. .++. ++..|..++++|
T Consensus 181 ~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL 258 (1023)
T 4hat_C 181 ALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT--SPDTRAITLKCL 258 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHH
Confidence 1124456666666644 456788889999999887665432 2345777777 6665 467999999999
Q ss_pred HHHHHH-h-CCc-ccccch-------HHHH-HHh-------------cCCCcHHHHHHHHHHHHHHHHhhCH--------
Q 009632 266 YELCEA-V-GPE-PTRMDL-------VPAY-VRL-------------LRDNEAEVRIAAAGKVTKFCRILNP-------- 313 (530)
Q Consensus 266 ~~l~~~-~-~~~-~~~~~l-------~~~l-~~~-------------l~d~~~~vr~~a~~~l~~~~~~~~~-------- 313 (530)
..+... . ++. .+.+.+ +..+ ..+ -.+.+.+........+..+++....
T Consensus 259 ~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~ 338 (1023)
T 4hat_C 259 TEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESL 338 (1023)
T ss_dssp HHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGG
T ss_pred HHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcch
Confidence 998752 2 221 111111 1111 111 1233455555555555555443211
Q ss_pred HHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccC--------HHHHHHhHHHHHHHhhcCCC--------------
Q 009632 314 ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG--------KDATIEQLLPIFLSLLKDEF-------------- 371 (530)
Q Consensus 314 ~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~--------~~~~~~~l~~~l~~~l~d~~-------------- 371 (530)
.......+..+......+++.+-..+++.+..+....- ...+..++.+.+..-+.-+.
T Consensus 339 ~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~ 418 (1023)
T 4hat_C 339 RELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVR 418 (1023)
T ss_dssp HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEE
T ss_pred hHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHH
Confidence 11112223344555566677776777777776654221 12334556666665543111
Q ss_pred -----h-------HHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcC--CChHHHHHHHHHHHHHHhhhChh---hHH
Q 009632 372 -----P-------DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLGVG---FFD 434 (530)
Q Consensus 372 -----~-------~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~--~~~~~R~~~~~~l~~l~~~~~~~---~~~ 434 (530)
. ..| ++|..+....+. ...+.+++.+.+.+.+ .+|+.|++++.+++.++.....+ .+.
T Consensus 419 e~~~d~d~~~~f~~~R----d~L~~l~~l~~~-~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l 493 (1023)
T 4hat_C 419 EFVKESDTIQLYKSER----EVLVYLTHLNVI-DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFV 493 (1023)
T ss_dssp CSSCCGGGHHHHHHHH----HHHHHHHHHCHH-HHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHH
T ss_pred HhccchHHHHHHHHHH----HHHHHHhccCHH-HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHH
Confidence 0 123 455555554444 4445677777666554 58999999999999999887654 355
Q ss_pred HHHHHHHHHHhc-----CCcHHHHHHHHHHHHHHHHHhChhH-HhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcCh
Q 009632 435 DKLGALCMQWLQ-----DKVYSIRDAAANNLKRLAEEFGPEW-AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS 508 (530)
Q Consensus 435 ~~~~~~l~~~l~-----d~~~~Vr~~a~~~l~~l~~~~~~~~-~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~ 508 (530)
..++|.+..+.. |+...||..++.++|++.+.+..++ ....++..+...+.++++.|..+|++++.++++.++.
T Consensus 494 ~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~ 573 (1023)
T 4hat_C 494 VTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKY 573 (1023)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 678888888876 5667789999999999988874332 2356777777778889999999999999999998775
Q ss_pred HH
Q 009632 509 EI 510 (530)
Q Consensus 509 ~~ 510 (530)
..
T Consensus 574 ~l 575 (1023)
T 4hat_C 574 HF 575 (1023)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 64
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.49 E-value=6.3e-13 Score=119.83 Aligned_cols=222 Identities=13% Similarity=0.086 Sum_probs=152.3
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc---hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc---hhh
Q 009632 165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP---QDC 238 (530)
Q Consensus 165 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~~ 238 (530)
.+.+..++.++++++|..++.+|..+...-.+ .......+|.+.+++.++++.+|..|+.++..++...+. ...
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 93 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 93 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 45666777788899999999999776654211 223345789999999999999999999999998864322 112
Q ss_pred hhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC---cccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH-
Q 009632 239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE- 314 (530)
Q Consensus 239 ~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~- 314 (530)
....+|.+..+++++++.+|..++.+|++++..... .......+|.+.+++.++++.+|..++.++..++......
T Consensus 94 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 173 (252)
T 4db8_A 94 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 173 (252)
T ss_dssp HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHH
Confidence 334788888888888899999999998888643211 1123357888888888888888988888888887532111
Q ss_pred --HHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCH---HHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhh
Q 009632 315 --LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN 386 (530)
Q Consensus 315 --~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 386 (530)
......+|.+.+++.++++.+|..++..+..++..-.. .......+|.+..++.++++.+|..|+.++.+++
T Consensus 174 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 174 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 12245677777777777778888888777777642211 1112245666666666666677777666666554
No 65
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.48 E-value=1.9e-11 Score=119.88 Aligned_cols=178 Identities=11% Similarity=0.019 Sum_probs=109.9
Q ss_pred hhHHHhhhcccchHHHHHHHHHHHHHHhhcCh---hhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChHHHH--
Q 009632 88 LPPLETLCTVEETCVRDKAVESLCRIGSQMRE---SDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKT-- 162 (530)
Q Consensus 88 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~~-- 162 (530)
+|.+..++.++++.++..|+.+|..++..-++ .......+|.+..++.+++..++..++..+..+... +++.+.
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~-~~~~k~~i 82 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFR-STTNKLET 82 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS-CHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-CHHHHHHH
Confidence 45555666666777888888888887754332 122334567777777777777777788877777764 233332
Q ss_pred ---HHHHHHHhhcC-CCChhHHHHHHHHHHHHHhhhcc--hhhHHHHHHHHHHhhc--------CC--------chhHHH
Q 009632 163 ---ELRSIYTQLCQ-DDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQ--------DD--------QDSVRL 220 (530)
Q Consensus 163 ---~l~~~l~~l~~-d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~--------d~--------~~~vr~ 220 (530)
..+|.+.+++. +.++++++.++.+|.+++.. +. ..+....+|.+.+++. ++ +..+..
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~ 161 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF 161 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHH
Confidence 34678888887 77888899998888888876 32 2222377888888882 22 344556
Q ss_pred HHHHHHHHHhhhcCc--hhhh--hccHHHHHHhcCC------CCHHHHHHHHHHHHHH
Q 009632 221 LAVEGCAALGKLLEP--QDCV--AHILPVIVNFSQD------KSWRVRYMVANQLYEL 268 (530)
Q Consensus 221 ~a~~~l~~l~~~~~~--~~~~--~~~~~~l~~~~~d------~~~~vr~~~~~~l~~l 268 (530)
.|..+|.+++.. ++ ..+. +.++|.+..++.+ .+.+++..++..+..+
T Consensus 162 ~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nL 218 (457)
T 1xm9_A 162 NATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNL 218 (457)
T ss_dssp HHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhc
Confidence 888888888865 22 1122 1466666665542 2233444444445444
No 66
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.47 E-value=7.8e-11 Score=125.30 Aligned_cols=492 Identities=10% Similarity=0.045 Sum_probs=299.2
Q ss_pred CcHHHHHHHhcCh--hHHHHHHHhhcHHHHHHhhChHhhhhccccccccccCCchHHHHHHHHHHhcccccCCCc----c
Q 009632 9 YPIAVLIDELKND--DIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGV----E 82 (530)
Q Consensus 9 ~~~~~l~~~l~~~--~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~~~~~l~~~~~~~~~~----~ 82 (530)
..+...++...++ |+..|..|.+.|.++-.. | ..+......+......++++|-.++..|.+.++.+..+ +
T Consensus 6 ~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~s--p-~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~ 82 (980)
T 3ibv_A 6 QDVENAVEAALDPSVGPIIKQQATDFIGSLRSS--S-TGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLE 82 (980)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHS--T-THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcC--h-hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHH
Confidence 3445555433344 799999999999887543 2 34444444443322237899999999998666644433 2
Q ss_pred ---chhcchhHHHhhh-cccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCcc-chhHHHHhHhh----hhc
Q 009632 83 ---HAHVLLPPLETLC-TVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWF-TARVSACGLFH----IAY 153 (530)
Q Consensus 83 ---~~~~l~~~l~~l~-~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~-~~r~~~~~~l~----~l~ 153 (530)
....++..+.... .+....+|.....++..+++..-++. ++.+++.+..+....+. ..-....+.+. ++.
T Consensus 83 ~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~-Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~ 161 (980)
T 3ibv_A 83 LQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSN-WNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIA 161 (980)
T ss_dssp HHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTT-CTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCccc-CchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHH
Confidence 1344555555422 13467899999999999998754432 33344444444333222 11122233333 222
Q ss_pred CC---CChH---H------------HHHHHHHHHhh----cCCCChhHHHHHHHHHHHHHhhhcchh-hHHHHHHHHHHh
Q 009632 154 PS---APDI---L------------KTELRSIYTQL----CQDDMPMVRRSAASNLGKFAATVEPAH-LKTDIMSIFEDL 210 (530)
Q Consensus 154 ~~---~~~~---~------------~~~l~~~l~~l----~~d~~~~vR~~a~~~l~~l~~~~~~~~-~~~~l~~~l~~~ 210 (530)
.. .++. . .+.+.+.+..+ ....++.++..++++++.+...++... ..+.+++.+.+.
T Consensus 162 ~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~ 241 (980)
T 3ibv_A 162 DSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSF 241 (980)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHH
T ss_pred hcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHH
Confidence 11 1110 0 11123333333 234678899999999999998766543 235688888888
Q ss_pred hcCCchhHHHHHHHHHHHHhhhcCchhhhhccH------HHHHHhcC-CCCHHHHHHHHHHHHHHHHHh-----CCc---
Q 009632 211 TQDDQDSVRLLAVEGCAALGKLLEPQDCVAHIL------PVIVNFSQ-DKSWRVRYMVANQLYELCEAV-----GPE--- 275 (530)
Q Consensus 211 ~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~------~~l~~~~~-d~~~~vr~~~~~~l~~l~~~~-----~~~--- 275 (530)
+.+ +.+|..|++++..+...-.+......++ +.+..+.. +.+..++...++.+..++..+ .+.
T Consensus 242 L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~ 319 (980)
T 3ibv_A 242 LQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELS 319 (980)
T ss_dssp TTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--C
T ss_pred cCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccc
Confidence 887 6899999999999987644311111122 22222222 456667776666665544331 110
Q ss_pred --------ccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC---H-----H---HHHhhhhHhHhHhcc---C---
Q 009632 276 --------PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN---P-----E---LAIQHILPCVKELSS---D--- 330 (530)
Q Consensus 276 --------~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~---~-----~---~~~~~l~~~l~~~~~---d--- 330 (530)
.....+++.++.++.+++++|-..++..+..+..... . + .+...+++.+..-+. |
T Consensus 320 ~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~ 399 (980)
T 3ibv_A 320 PELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEW 399 (980)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCC
T ss_pred hhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCcccc
Confidence 1234688999999999999998877777776665321 1 1 223334444432221 1
Q ss_pred -C----c-----HHHHHHHHHHHHhhccccCHHHHHH----hHHHHHHHhhc---CCChHHHHHHHHhhHHhhhhhchh-
Q 009632 331 -S----S-----QHVRSALASVIMGMAPLLGKDATIE----QLLPIFLSLLK---DEFPDVRLNIISKLDQVNQVIGID- 392 (530)
Q Consensus 331 -~----~-----~~vr~~~~~~l~~l~~~~~~~~~~~----~l~~~l~~~l~---d~~~~vr~~a~~~l~~l~~~~~~~- 392 (530)
. + ...|..+. .+-..+..+|++.+.. .+.+.+.+.+. +.+|..+++++-+++.+++.+...
T Consensus 400 ~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~ 478 (980)
T 3ibv_A 400 DDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPD 478 (980)
T ss_dssp CCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGG
T ss_pred ccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccc
Confidence 1 1 13555555 5555566667777666 66666666663 356899999999999888765431
Q ss_pred -------HHHhhHHHHHHHHhc-----CCChHHHHHHHHHHHHHHhhhCh-hhHHHHHHHHHHH--HhcCCcHHHHHHHH
Q 009632 393 -------LLSQSLLPAIVELAE-----DRHWRVRLAIIEYIPLLASQLGV-GFFDDKLGALCMQ--WLQDKVYSIRDAAA 457 (530)
Q Consensus 393 -------~~~~~l~~~l~~~~~-----~~~~~~R~~~~~~l~~l~~~~~~-~~~~~~~~~~l~~--~l~d~~~~Vr~~a~ 457 (530)
...+.+++.+..+++ ++++.+|..++++++..++.+.. ..+...+++.+.. .+.+++..||.+|+
T Consensus 479 ~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~ 558 (980)
T 3ibv_A 479 AFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAW 558 (980)
T ss_dssp GTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHH
T ss_pred cccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHH
Confidence 122356676766654 77899999999999999887753 2344567777777 77788999999999
Q ss_pred HHHHHHHHHhChhHH--hhhhHHHHHhhccC---C------------------ChHHHHHHHHHHHHHhhhcC
Q 009632 458 NNLKRLAEEFGPEWA--MQHITPQVLEMINN---P------------------HYLYRMTILRAISLLAPVMG 507 (530)
Q Consensus 458 ~~l~~l~~~~~~~~~--~~~i~~~l~~~~~d---~------------------~~~vr~~a~~~l~~i~~~~~ 507 (530)
.++..+++.++.... .+.++..+..++.- + ..+-+....+++|.++...+
T Consensus 559 ~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~ 631 (980)
T 3ibv_A 559 YLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGN 631 (980)
T ss_dssp HHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCC
Confidence 999999998875422 13455555554431 1 12357789999999997764
No 67
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.47 E-value=2.2e-10 Score=114.85 Aligned_cols=460 Identities=10% Similarity=0.029 Sum_probs=272.6
Q ss_pred CCchHHHHHHHHHHhcccccCCCccchhcchhHHHhhhcccc----hHHHHHHHHHHHHHHhhcCh---h-hhhhhHHHH
Q 009632 58 DDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEE----TCVRDKAVESLCRIGSQMRE---S-DLVDWYIPL 129 (530)
Q Consensus 58 d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~----~~vR~~a~~~l~~l~~~~~~---~-~~~~~l~~~ 129 (530)
.+.+++|..+-..+.++.+... +.+...+..++..++-+.+ ..--..++.++..+....+. . ...+.+.+.
T Consensus 181 ~~~~~~~~~~l~i~~~~~~~~~-~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~ 259 (778)
T 3opb_A 181 ISEDEVKSMMLIIFAELQSSFQ-KDFDKAVVDFMSSLIVEAEIDVGNDPLSIIVKTLSELYPSLTTLCSEIFLTKGLSKL 259 (778)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHTTTTHHHHHHHHSTTTHHHH
T ss_pred cChhhhHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhcCCHHHHHHHHccccHHHH
Confidence 4566777776666655544322 3455566666665552211 11223344555555444332 1 112234556
Q ss_pred HHHHhcC-CccchhHHHHhHhhhhcCCCChH--HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc-hhhHHHHHH
Q 009632 130 VKRLAAG-EWFTARVSACGLFHIAYPSAPDI--LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP-AHLKTDIMS 205 (530)
Q Consensus 130 l~~l~~~-~~~~~r~~~~~~l~~l~~~~~~~--~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~-~~~~~~l~~ 205 (530)
+.+.... ++......+..++...+..-... ..+...+.+.+++++ ..+|..|+-.|..+...-+. ..-...+.+
T Consensus 260 l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si~~La~ 337 (778)
T 3opb_A 260 FKKRVFEEQDLQFTKELLRLLSSACIDETMRTYITENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINLKQLSE 337 (778)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCHHHHHH
T ss_pred HHHHHhcccchHHHHHHHHHHHHHhCCcHHHHHHHHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcHHHHHH
Confidence 6555533 34445566677776655432221 446667777787765 57888888888887654332 233456888
Q ss_pred HHHHhhcCCchhHHHHHHHHHHHHhhhcCc-hhh--hhccHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHhCCcc----c
Q 009632 206 IFEDLTQDDQDSVRLLAVEGCAALGKLLEP-QDC--VAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPEP----T 277 (530)
Q Consensus 206 ~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-~~~--~~~~~~~l~~~~~d-~~~~vr~~~~~~l~~l~~~~~~~~----~ 277 (530)
.+.+.+.+++...|..|++.|.++...-.- +.+ ...+++.+..++++ .+..+-..++..|+++........ .
T Consensus 338 ~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~ 417 (778)
T 3opb_A 338 IFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXX 417 (778)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC-
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhh
Confidence 999999887666699999999998754221 111 12356666666664 445577777788888776543211 1
Q ss_pred ccchHHHHHHhcCC--CcHHHHHHHHHHHHH-HHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCH--
Q 009632 278 RMDLVPAYVRLLRD--NEAEVRIAAAGKVTK-FCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK-- 352 (530)
Q Consensus 278 ~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~-~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~-- 352 (530)
..++.++.....-+ +.+...... ..... -...+ ....++|.+..++.+.++.+|..+++.+..++..-..
T Consensus 418 l~~Lk~~A~~~~p~~~~~d~~~~~~-~~v~~~~~~~l----~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~ 492 (778)
T 3opb_A 418 XXXXXXXXXXXXPAADKVGAEKAAK-EDILLFNEKYI----LRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIP 492 (778)
T ss_dssp -----------------CCTHHHHH-HHHHHHHHHHT----TTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHH
T ss_pred hhhhhhhccccCcccCcccccccch-HHHHHHHHHHH----HHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 22222222111100 000100000 01111 11111 1235688888888889999999999999999754321
Q ss_pred HHHHHhHHHHHHHhhcCCChH---HHHHHHHhhHHhhhhhchhHHH-----hhHHHHHHHHhcC-CCh------------
Q 009632 353 DATIEQLLPIFLSLLKDEFPD---VRLNIISKLDQVNQVIGIDLLS-----QSLLPAIVELAED-RHW------------ 411 (530)
Q Consensus 353 ~~~~~~l~~~l~~~l~d~~~~---vr~~a~~~l~~l~~~~~~~~~~-----~~l~~~l~~~~~~-~~~------------ 411 (530)
....+..++.++.++.+.... +|..|+.+|.++.....+.... ...+|.|.+++.. +..
T Consensus 493 ~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~ 572 (778)
T 3opb_A 493 QLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIK 572 (778)
T ss_dssp HHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCC
T ss_pred HHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCccccccccccccc
Confidence 223456788899999877554 8999999999987443322211 2578888888872 221
Q ss_pred -HHHHHHHHHHHHHHhhhCh------h-hHH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCh---hHHh---hh-
Q 009632 412 -RVRLAIIEYIPLLASQLGV------G-FFD-DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAM---QH- 475 (530)
Q Consensus 412 -~~R~~~~~~l~~l~~~~~~------~-~~~-~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~---~~~~---~~- 475 (530)
..+..|+.+|.+++..-+. . .+. ...+|.+..++.+.+..||.+|+++++.++..-.. .+.. ..
T Consensus 573 ~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~ 652 (778)
T 3opb_A 573 LTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQS 652 (778)
T ss_dssp HHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHH
T ss_pred HHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchh
Confidence 2388999999999986431 1 233 35889999999999999999999999999863321 1111 01
Q ss_pred --hHHHHHhhccCCChHHHHHHHHHHHHHhhhcCh---HHHH-hhHHHHHHhhccC
Q 009632 476 --ITPQVLEMINNPHYLYRMTILRAISLLAPVMGS---EITC-SRLLPVVINASKD 525 (530)
Q Consensus 476 --i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~---~~~~-~~~~p~l~~~l~D 525 (530)
=++.+..+++..+.++|.+|..+++.+....+. ..+. +..++.+...+.|
T Consensus 653 ~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~ 708 (778)
T 3opb_A 653 LRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFAD 708 (778)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhc
Confidence 166788889999999999999999998643332 2222 2345555555544
No 68
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.46 E-value=3.3e-11 Score=116.15 Aligned_cols=247 Identities=13% Similarity=0.041 Sum_probs=174.9
Q ss_pred HHHHHHHHHHHHh--CCcccccchHHHHHHhcC-----------CCcHHHHHHHHHHHHHHHHhhCHH--HH--HhhhhH
Q 009632 260 MVANQLYELCEAV--GPEPTRMDLVPAYVRLLR-----------DNEAEVRIAAAGKVTKFCRILNPE--LA--IQHILP 322 (530)
Q Consensus 260 ~~~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~-----------d~~~~vr~~a~~~l~~~~~~~~~~--~~--~~~l~~ 322 (530)
.++++|++++..- .........++.+..++. +.++.++..|+.+|..++..-... .+ ....+|
T Consensus 167 qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp 246 (458)
T 3nmz_A 167 PAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMR 246 (458)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHH
Confidence 6666777664210 001112346677777763 134789999999999998643211 22 234589
Q ss_pred hHhHhccCCcHHHHHHHHHHHHhhccccCHH---HH-HHhHHHHHHHh-hcCCChHHHHHHHHhhHHhhhhh-c-hhHH-
Q 009632 323 CVKELSSDSSQHVRSALASVIMGMAPLLGKD---AT-IEQLLPIFLSL-LKDEFPDVRLNIISKLDQVNQVI-G-IDLL- 394 (530)
Q Consensus 323 ~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~-~~~l~~~l~~~-l~d~~~~vr~~a~~~l~~l~~~~-~-~~~~- 394 (530)
.+..++.+.+..++..++.++..++..-+.+ .+ ....+|.+..+ +...+..++..++.++.++.... + ...+
T Consensus 247 ~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~ 326 (458)
T 3nmz_A 247 ALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADIC 326 (458)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 9999999999999999999999987532221 12 23567888886 45678899999999998887622 1 1122
Q ss_pred -HhhHHHHHHHHhcCCCh----HHHHHHHHHHHHHHhh--hChhh----HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Q 009632 395 -SQSLLPAIVELAEDRHW----RVRLAIIEYIPLLASQ--LGVGF----FDDKLGALCMQWLQDKVYSIRDAAANNLKRL 463 (530)
Q Consensus 395 -~~~l~~~l~~~~~~~~~----~~R~~~~~~l~~l~~~--~~~~~----~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l 463 (530)
....+|.|..++.+.+. .++..++.++..++.. .+.+. .....+|.+..++.+....+++.|+.+|+.+
T Consensus 327 ~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nL 406 (458)
T 3nmz_A 327 AVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNL 406 (458)
T ss_dssp HSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 24678999998876543 5899999999998863 12222 2234689999999999999999999999999
Q ss_pred HHHhChh----HHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcC
Q 009632 464 AEEFGPE----WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG 507 (530)
Q Consensus 464 ~~~~~~~----~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~ 507 (530)
+.. .++ ......+|.|.+++..++..+|..|+.++.+++..-+
T Consensus 407 a~~-~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 407 SAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp HSS-CHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred HcC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 732 111 2235679999999999999999999999999987643
No 69
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.46 E-value=1.3e-10 Score=114.59 Aligned_cols=344 Identities=13% Similarity=0.089 Sum_probs=234.2
Q ss_pred chhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChh---hhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChH
Q 009632 83 HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES---DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI 159 (530)
Q Consensus 83 ~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~ 159 (530)
+...-+|.|..++.+.++.++..|+.+|..++..-.+. ....-.+|.+..++.+++..++..|+..+..++..-+++
T Consensus 45 ~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~ 124 (584)
T 3l6x_A 45 WRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQD 124 (584)
T ss_dssp CCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHH
T ss_pred cccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHH
Confidence 44556777777777788899999999999888643321 223336788888888888899999999999988753333
Q ss_pred HH-----HHHHHHHHhhcCC-CChhHHHHHHHHHHHHHhhhcc-hhhHHHHHHHHHHhhc------------------CC
Q 009632 160 LK-----TELRSIYTQLCQD-DMPMVRRSAASNLGKFAATVEP-AHLKTDIMSIFEDLTQ------------------DD 214 (530)
Q Consensus 160 ~~-----~~l~~~l~~l~~d-~~~~vR~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~~~------------------d~ 214 (530)
.+ ...+|.|..++.+ .+..+++.++.+|..++..-.. ..+....+|.+.+++. .+
T Consensus 125 nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~ 204 (584)
T 3l6x_A 125 NKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIE 204 (584)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCC
T ss_pred HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccc
Confidence 22 3457788888875 5788999999999888763221 2223445677777551 12
Q ss_pred chhHHHHHHHHHHHHhhhcCc--hhhh--hccHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHhC-----------
Q 009632 215 QDSVRLLAVEGCAALGKLLEP--QDCV--AHILPVIVNFSQ------DKSWRVRYMVANQLYELCEAVG----------- 273 (530)
Q Consensus 215 ~~~vr~~a~~~l~~l~~~~~~--~~~~--~~~~~~l~~~~~------d~~~~vr~~~~~~l~~l~~~~~----------- 273 (530)
+..|+..|..+|.+++..-.. ..+. ..+++.+..+++ +.+......++.+|.+++....
T Consensus 205 d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~ 284 (584)
T 3l6x_A 205 WESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQE 284 (584)
T ss_dssp CHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC---
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhh
Confidence 468999999999998864321 1111 224444444432 3445566777777777664321
Q ss_pred ------------Ccc-----cccchHHHHHHhcC-CCcHHHHHHHHHHHHHHHHhhCHH------HH-HhhhhHhHhHhc
Q 009632 274 ------------PEP-----TRMDLVPAYVRLLR-DNEAEVRIAAAGKVTKFCRILNPE------LA-IQHILPCVKELS 328 (530)
Q Consensus 274 ------------~~~-----~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~------~~-~~~l~~~l~~~~ 328 (530)
... +....++.++.++. ..++.++++|+.+|..++..-+.. .+ ....+|.+.+++
T Consensus 285 ~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL 364 (584)
T 3l6x_A 285 AAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLL 364 (584)
T ss_dssp -----------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGG
T ss_pred hcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHH
Confidence 000 11235677888885 456899999999999997532211 11 145689999999
Q ss_pred cCCcHHHHHHHHHHHHhhccccC-HHHHHHhHHHHHHHhhcCC--------ChHHHHHHHHhhHHhhhhhch---hHHHh
Q 009632 329 SDSSQHVRSALASVIMGMAPLLG-KDATIEQLLPIFLSLLKDE--------FPDVRLNIISKLDQVNQVIGI---DLLSQ 396 (530)
Q Consensus 329 ~d~~~~vr~~~~~~l~~l~~~~~-~~~~~~~l~~~l~~~l~d~--------~~~vr~~a~~~l~~l~~~~~~---~~~~~ 396 (530)
.+.+..++..++.++..++.... ...+....+|.+..+|.+. ..+++..++.++.+++..-.. .....
T Consensus 365 ~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~ 444 (584)
T 3l6x_A 365 TNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRET 444 (584)
T ss_dssp GCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHC
Confidence 99999999999999999876543 2445678899999999876 357888888888887633111 11234
Q ss_pred hHHHHHHHHhcCC--ChHHHHHHHHHHHHHHh
Q 009632 397 SLLPAIVELAEDR--HWRVRLAIIEYIPLLAS 426 (530)
Q Consensus 397 ~l~~~l~~~~~~~--~~~~R~~~~~~l~~l~~ 426 (530)
..+|.|..++.+. ...++..|..++..+..
T Consensus 445 g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 445 QGIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp THHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred CChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 6788899988875 77899999999998875
No 70
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=99.46 E-value=2.4e-14 Score=125.10 Aligned_cols=186 Identities=22% Similarity=0.209 Sum_probs=123.7
Q ss_pred hhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHh
Q 009632 170 QLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNF 249 (530)
Q Consensus 170 ~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ 249 (530)
.++.|+++.||..++..+ +. ..+..++.|+++.||..++..+ +. +.+..+
T Consensus 57 ~ll~d~~~~VR~~AA~~l-------~~--------~~l~~L~~D~~~~VR~~aA~~L-------~~--------~~L~~l 106 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYS-------PV--------EALTPLIRDSDEVVRRAVAYRL-------PR--------EQLSAL 106 (244)
T ss_dssp GGTTCSSHHHHHHHHTTS-------CG--------GGGGGGTTCSSHHHHHHHHTTS-------CS--------GGGGGT
T ss_pred HHhcCCCHHHHHHHHHhC-------CH--------HHHHHHccCcCHHHHHHHHHHC-------CH--------HHHHHH
Confidence 566788888888887754 11 2355677888888888877653 21 346667
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhcc
Q 009632 250 SQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS 329 (530)
Q Consensus 250 ~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 329 (530)
++|++|.||..++..+ .. +.+..+++|+++.||..++..+ + .+.+..+.+
T Consensus 107 l~D~d~~VR~~aA~~l-------~~--------~~L~~L~~D~d~~VR~~aA~~l-------~--------~~~l~~l~~ 156 (244)
T 1lrv_A 107 MFDEDREVRITVADRL-------PL--------EQLEQMAADRDYLVRAYVVQRI-------P--------PGRLFRFMR 156 (244)
T ss_dssp TTCSCHHHHHHHHHHS-------CT--------GGGGGGTTCSSHHHHHHHHHHS-------C--------GGGGGGTTT
T ss_pred HcCCCHHHHHHHHHhC-------CH--------HHHHHHHcCCCHHHHHHHHHhc-------C--------HHHHHHHHc
Confidence 8888888888877643 11 2345667888888888887632 1 123456677
Q ss_pred CCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCC
Q 009632 330 DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR 409 (530)
Q Consensus 330 d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~ 409 (530)
|++|.||..++..+ +. +.+..+++|+++.||..++..+. . +.+..++.|+
T Consensus 157 D~d~~VR~~aa~~l-------~~--------~ll~~ll~D~d~~VR~aaa~~l~-------~--------~~L~~Ll~D~ 206 (244)
T 1lrv_A 157 DEDRQVRKLVAKRL-------PE--------ESLGLMTQDPEPEVRRIVASRLR-------G--------DDLLELLHDP 206 (244)
T ss_dssp CSCHHHHHHHHHHS-------CG--------GGGGGSTTCSSHHHHHHHHHHCC-------G--------GGGGGGGGCS
T ss_pred CCCHHHHHHHHHcC-------CH--------HHHHHHHcCCCHHHHHHHHHhCC-------H--------HHHHHHHcCC
Confidence 88888888877751 11 34456778888888888877641 1 2345557888
Q ss_pred ChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 009632 410 HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLK 461 (530)
Q Consensus 410 ~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~ 461 (530)
+|.+|..++..++ .+.+..+ .|+++.||..+.+.||
T Consensus 207 d~~VR~~aa~~l~---------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 207 DWTVRLAAVEHAS---------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp SHHHHHHHHHHSC---------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred CHHHHHHHHHcCC---------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 8888888877754 1345455 8888888888876654
No 71
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=99.40 E-value=2.2e-13 Score=119.01 Aligned_cols=188 Identities=23% Similarity=0.188 Sum_probs=104.8
Q ss_pred HHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChHHHHHHHHHHHh
Q 009632 91 LETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQ 170 (530)
Q Consensus 91 l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~ 170 (530)
+..+++|+++.||..++..+ +. ..+..+.+|+++.||..+...+. . +.+..
T Consensus 55 ~~~ll~d~~~~VR~~AA~~l-------~~--------~~l~~L~~D~~~~VR~~aA~~L~-------~-------~~L~~ 105 (244)
T 1lrv_A 55 AVQYLADPFWERRAIAVRYS-------PV--------EALTPLIRDSDEVVRRAVAYRLP-------R-------EQLSA 105 (244)
T ss_dssp GGGGTTCSSHHHHHHHHTTS-------CG--------GGGGGGTTCSSHHHHHHHHTTSC-------S-------GGGGG
T ss_pred HHHHhcCCCHHHHHHHHHhC-------CH--------HHHHHHccCcCHHHHHHHHHHCC-------H-------HHHHH
Confidence 44556788888888877643 21 12445556666777776655321 1 23456
Q ss_pred hcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhc
Q 009632 171 LCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFS 250 (530)
Q Consensus 171 l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~ 250 (530)
+++|+++.||..++..+ +. +.+..+++|+++.||..++..+ ++ +.+..+.
T Consensus 106 ll~D~d~~VR~~aA~~l-------~~--------~~L~~L~~D~d~~VR~~aA~~l-------~~--------~~l~~l~ 155 (244)
T 1lrv_A 106 LMFDEDREVRITVADRL-------PL--------EQLEQMAADRDYLVRAYVVQRI-------PP--------GRLFRFM 155 (244)
T ss_dssp TTTCSCHHHHHHHHHHS-------CT--------GGGGGGTTCSSHHHHHHHHHHS-------CG--------GGGGGTT
T ss_pred HHcCCCHHHHHHHHHhC-------CH--------HHHHHHHcCCCHHHHHHHHHhc-------CH--------HHHHHHH
Confidence 66677777777766632 11 1234456677777777666521 11 2344566
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccC
Q 009632 251 QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSD 330 (530)
Q Consensus 251 ~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d 330 (530)
+|++|.||..++..+ + -+.+..+++|++++||.+++..+ + .+.+..+++|
T Consensus 156 ~D~d~~VR~~aa~~l-------~--------~~ll~~ll~D~d~~VR~aaa~~l-------~--------~~~L~~Ll~D 205 (244)
T 1lrv_A 156 RDEDRQVRKLVAKRL-------P--------EESLGLMTQDPEPEVRRIVASRL-------R--------GDDLLELLHD 205 (244)
T ss_dssp TCSCHHHHHHHHHHS-------C--------GGGGGGSTTCSSHHHHHHHHHHC-------C--------GGGGGGGGGC
T ss_pred cCCCHHHHHHHHHcC-------C--------HHHHHHHHcCCCHHHHHHHHHhC-------C--------HHHHHHHHcC
Confidence 667777777665531 1 12344566677777776666542 1 1345555667
Q ss_pred CcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhH
Q 009632 331 SSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLD 383 (530)
Q Consensus 331 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~ 383 (530)
++|+||..+++.++ .+.+..+ +|+++.||..+...|+
T Consensus 206 ~d~~VR~~aa~~l~---------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 206 PDWTVRLAAVEHAS---------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp SSHHHHHHHHHHSC---------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred CCHHHHHHHHHcCC---------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 77777766666532 1333344 6666677766665553
No 72
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.40 E-value=3.9e-10 Score=115.46 Aligned_cols=300 Identities=13% Similarity=0.067 Sum_probs=151.2
Q ss_pred ccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCc--------cchhHHHHhHhhhhcCCCChHHHHHHHHHH
Q 009632 97 VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEW--------FTARVSACGLFHIAYPSAPDILKTELRSIY 168 (530)
Q Consensus 97 d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~--------~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l 168 (530)
.+++.+|..|+.+++-+......+ ....+...+.+++ +.+|..++..+|.+.-..+. +++.+.+
T Consensus 406 s~~~~ik~GAllaLGli~ag~~~~-----~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~---eev~e~L 477 (963)
T 4ady_A 406 ASSRFIKGGSLYGLGLIYAGFGRD-----TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN---IEVYEAL 477 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTTTTTHH-----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC---HHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhcCCCcHH-----HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC---HHHHHHH
Confidence 345667777777777776655432 1222222222222 45666666666665543332 2233333
Q ss_pred HhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHH
Q 009632 169 TQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVN 248 (530)
Q Consensus 169 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ 248 (530)
...+.|.+..+|..++.+||.+.-.-+++.....++..+. .+.++.+|..++.+|+-+.- |.+.. +-..+..
T Consensus 478 ~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~---e~~~e~vrR~aalgLGll~~--g~~e~---~~~li~~ 549 (963)
T 4ady_A 478 KEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQ---ETQHGNITRGLAVGLALINY--GRQEL---ADDLITK 549 (963)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTT--TCGGG---GHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHh---ccCcHHHHHHHHHHHHhhhC--CChHH---HHHHHHH
Confidence 3444445556666676666665443344333343444332 34455667666666665532 22211 2222333
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhc
Q 009632 249 FSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELS 328 (530)
Q Consensus 249 ~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 328 (530)
+..+.+|.+|..++.+++-..-..|.....+.+ +-.+..|.+++||.+|+-+|+.+.- |.. +.+...+..+.
T Consensus 550 L~~~~dp~vRygaa~alglAyaGTGn~~aIq~L---L~~~~~d~~d~VRraAViaLGlI~~--g~~---e~v~rlv~~L~ 621 (963)
T 4ady_A 550 MLASDESLLRYGGAFTIALAYAGTGNNSAVKRL---LHVAVSDSNDDVRRAAVIALGFVLL--RDY---TTVPRIVQLLS 621 (963)
T ss_dssp HHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHH---HHHHHHCSCHHHHHHHHHHHHHHTS--SSC---SSHHHHTTTGG
T ss_pred HHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHH---HHHhccCCcHHHHHHHHHHHHhhcc--CCH---HHHHHHHHHHH
Confidence 444566777777666655443333332222222 2223346666777777777765532 111 11122222344
Q ss_pred cCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhH--HHhhHHHHHHHHh
Q 009632 329 SDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELA 406 (530)
Q Consensus 329 ~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~~ 406 (530)
++.++.+|.+++.+++.++..-+. ..++..+..+..|.+..||..|+.+|+.+...-.... -...++..+.+..
T Consensus 622 ~~~d~~VR~gAalALGli~aGn~~----~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~ 697 (963)
T 4ady_A 622 KSHNAHVRCGTAFALGIACAGKGL----QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVI 697 (963)
T ss_dssp GCSCHHHHHHHHHHHHHHTSSSCC----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHhccCCCc----HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHH
Confidence 566677777777777776644442 2344455566677777777777777776653322110 1133444455555
Q ss_pred cC--CChHHHHHHHHHHHHH
Q 009632 407 ED--RHWRVRLAIIEYIPLL 424 (530)
Q Consensus 407 ~~--~~~~~R~~~~~~l~~l 424 (530)
.+ .+...|..+.-+.|.+
T Consensus 698 ~dk~~d~~~~fga~iAqGll 717 (963)
T 4ady_A 698 TNKHQEGLAKFGACVAQGIM 717 (963)
T ss_dssp HCSSSCHHHHHHHHHHHHHH
T ss_pred hcccccHHHHHHHHHHHHHH
Confidence 44 3455666665555554
No 73
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.39 E-value=1.8e-10 Score=117.87 Aligned_cols=308 Identities=13% Similarity=0.097 Sum_probs=202.3
Q ss_pred HHHHHhhcC---CCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCc--------hhHHHHHHHHHHHHhhhc
Q 009632 165 RSIYTQLCQ---DDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQ--------DSVRLLAVEGCAALGKLL 233 (530)
Q Consensus 165 ~~~l~~l~~---d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~--------~~vr~~a~~~l~~l~~~~ 233 (530)
+..+...+. +.++.+|..|+.++|.+....+.+ .+..|...+.+++ +.+|..|+-.|+.+.-..
T Consensus 394 l~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~-----~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS 468 (963)
T 4ady_A 394 KKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRD-----TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGS 468 (963)
T ss_dssp HHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHH-----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHH-----HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCC
Confidence 444444444 567889999999999987765542 3455555554443 678888888888866544
Q ss_pred CchhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH
Q 009632 234 EPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP 313 (530)
Q Consensus 234 ~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~ 313 (530)
+.+. +.+.+...+.|++..+|..++-++|.+.-..|.....+.++..+. .+.+..+|..++-+|+.+. +|.
T Consensus 469 ~~ee----v~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~---e~~~e~vrR~aalgLGll~--~g~ 539 (963)
T 4ady_A 469 ANIE----VYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQ---ETQHGNITRGLAVGLALIN--YGR 539 (963)
T ss_dssp CCHH----HHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHT--TTC
T ss_pred CCHH----HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHh---ccCcHHHHHHHHHHHHhhh--CCC
Confidence 4333 556666666666677888888888877655554433344444433 4556789999888888763 344
Q ss_pred HHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhH
Q 009632 314 ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL 393 (530)
Q Consensus 314 ~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 393 (530)
....+.+ +..+..+.+|.+|.+++-+++.-....|.....+.+ +..+..|.+..||..|+.+++-+.- |.+
T Consensus 540 ~e~~~~l---i~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~L---L~~~~~d~~d~VRraAViaLGlI~~--g~~- 610 (963)
T 4ady_A 540 QELADDL---ITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRL---LHVAVSDSNDDVRRAAVIALGFVLL--RDY- 610 (963)
T ss_dssp GGGGHHH---HHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHH---HHHHHHCSCHHHHHHHHHHHHHHTS--SSC-
T ss_pred hHHHHHH---HHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHH---HHHhccCCcHHHHHHHHHHHHhhcc--CCH-
Confidence 3222222 233345788999999888887665555654444434 3344568888999999999887642 221
Q ss_pred HHhhHHHHHHH-HhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhH-
Q 009632 394 LSQSLLPAIVE-LAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW- 471 (530)
Q Consensus 394 ~~~~l~~~l~~-~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~- 471 (530)
...+.+.. +..+.++.+|..+..+++.++..-+. ..++..+..+.+|++..||..|+.+||.+.....+..
T Consensus 611 ---e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~----~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~ 683 (963)
T 4ady_A 611 ---TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL----QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLN 683 (963)
T ss_dssp ---SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTC
T ss_pred ---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc----HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccc
Confidence 23444444 45677899999999999988644332 3466778888899999999999999998875432221
Q ss_pred -HhhhhHHHHHhhccC--CChHHHHHHHHHHHHH
Q 009632 472 -AMQHITPQVLEMINN--PHYLYRMTILRAISLL 502 (530)
Q Consensus 472 -~~~~i~~~l~~~~~d--~~~~vr~~a~~~l~~i 502 (530)
....++..+.+...| .+...|-.+.-+.|-+
T Consensus 684 ~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll 717 (963)
T 4ady_A 684 PQVADINKNFLSVITNKHQEGLAKFGACVAQGIM 717 (963)
T ss_dssp TTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 124455666666655 4566777777777755
No 74
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.36 E-value=4.5e-10 Score=108.27 Aligned_cols=305 Identities=13% Similarity=0.063 Sum_probs=204.0
Q ss_pred HHHHHHHHhhcCCC------------ChhHHHHHHHHHHHHHhhhcchhh---HHHHH----------HHHHHhhcCCc-
Q 009632 162 TELRSIYTQLCQDD------------MPMVRRSAASNLGKFAATVEPAHL---KTDIM----------SIFEDLTQDDQ- 215 (530)
Q Consensus 162 ~~l~~~l~~l~~d~------------~~~vR~~a~~~l~~l~~~~~~~~~---~~~l~----------~~l~~~~~d~~- 215 (530)
..++|.|.++++.. ++.+|..|+.+|.+++..-++... ...++ +.+.+++....
T Consensus 69 ~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 148 (458)
T 3nmz_A 69 SGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEP 148 (458)
T ss_dssp HTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred CCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc
Confidence 33556666666542 368999999999999876554211 11122 33334443221
Q ss_pred -h-----hHHH-------HHHHHHHHHhhhcCc--hhhhhccHHHHHHhcC----------C-CCHHHHHHHHHHHHHHH
Q 009632 216 -D-----SVRL-------LAVEGCAALGKLLEP--QDCVAHILPVIVNFSQ----------D-KSWRVRYMVANQLYELC 269 (530)
Q Consensus 216 -~-----~vr~-------~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~~~----------d-~~~~vr~~~~~~l~~l~ 269 (530)
+ .++. .|+.+|..++..-.. .......++.+..++. + .+..++..++.+|.+++
T Consensus 149 ~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa 228 (458)
T 3nmz_A 149 GMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLT 228 (458)
T ss_dssp SSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHh
Confidence 1 1555 788888888643110 1112346666766662 1 34678999999999998
Q ss_pred HHhC--Cccc--ccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH----HHHhhhhHhHhHh-ccCCcHHHHHHHH
Q 009632 270 EAVG--PEPT--RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----LAIQHILPCVKEL-SSDSSQHVRSALA 340 (530)
Q Consensus 270 ~~~~--~~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~----~~~~~l~~~l~~~-~~d~~~~vr~~~~ 340 (530)
..-. +... ....+|.+++++..++++++..|+.+|..++..-+.+ ......+|.+.++ ..+.+..++..++
T Consensus 229 ~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~ 308 (458)
T 3nmz_A 229 FGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVL 308 (458)
T ss_dssp TTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHH
T ss_pred CCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHH
Confidence 4311 0111 2356899999999999999999999999987531221 1223457777775 5667889999988
Q ss_pred HHHHhhccccC--HHHH--HHhHHHHHHHhhcCCCh----HHHHHHHHhhHHhhhhh--chh---H-HHhhHHHHHHHHh
Q 009632 341 SVIMGMAPLLG--KDAT--IEQLLPIFLSLLKDEFP----DVRLNIISKLDQVNQVI--GID---L-LSQSLLPAIVELA 406 (530)
Q Consensus 341 ~~l~~l~~~~~--~~~~--~~~l~~~l~~~l~d~~~----~vr~~a~~~l~~l~~~~--~~~---~-~~~~l~~~l~~~~ 406 (530)
.++..++.... ...+ ....+|.+..+|.+... .++..++.+|.++...+ +++ . .....+|.|..++
T Consensus 309 ~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL 388 (458)
T 3nmz_A 309 SALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHL 388 (458)
T ss_dssp HHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHS
T ss_pred HHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHH
Confidence 88888876331 1222 24578999999987654 48999999998887521 111 1 1235789999999
Q ss_pred cCCChHHHHHHHHHHHHHHhhhC--hh-hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Q 009632 407 EDRHWRVRLAIIEYIPLLASQLG--VG-FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE 466 (530)
Q Consensus 407 ~~~~~~~R~~~~~~l~~l~~~~~--~~-~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 466 (530)
.+.+..++..|+.++..++..-. .. ......+|.+..++..++..+|+.|+.+|..++..
T Consensus 389 ~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 389 KSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp SCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred cCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 99999999999999999984211 11 12345789999999999999999999999998864
No 75
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.34 E-value=1.1e-09 Score=113.74 Aligned_cols=259 Identities=12% Similarity=0.187 Sum_probs=202.9
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc----hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchh
Q 009632 162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP----AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD 237 (530)
Q Consensus 162 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~ 237 (530)
..+...+.+.+.|.... ..|+.++..++...+. +.+.-.++|.+.....|....||.+|..+...+...+++..
T Consensus 53 ~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a 130 (986)
T 2iw3_A 53 EHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVA 130 (986)
T ss_dssp HHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGG
T ss_pred hhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHH
Confidence 35777777777776444 8999999999976654 22223356888888899999999999999999999999876
Q ss_pred hhhccHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHhCCcc--cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH
Q 009632 238 CVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE 314 (530)
Q Consensus 238 ~~~~~~~~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~ 314 (530)
. ..++|.+...+.+. .|+.+..++..++.++....... ....++|.+...+.|..++|+.+|.+++..++..+++.
T Consensus 131 ~-~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~ 209 (986)
T 2iw3_A 131 I-KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNK 209 (986)
T ss_dssp H-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCT
T ss_pred H-HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCc
Confidence 5 77888888877654 69999999999999998763322 35689999999999999999999999999999999988
Q ss_pred HHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhcccc----CHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhc
Q 009632 315 LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL----GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG 390 (530)
Q Consensus 315 ~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~----~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 390 (530)
++ +.++|.+.+.+.+++. +-+++..++..- -.......+.|++...|+++...++.+++-.+.++++...
T Consensus 210 d~-~~~~~~~~~~~~~p~~-----~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~ 283 (986)
T 2iw3_A 210 DI-ERFIPSLIQCIADPTE-----VPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVE 283 (986)
T ss_dssp TT-GGGHHHHHHHHHCTTH-----HHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCC
T ss_pred ch-hhhHHHHHHHhcChhh-----hHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcC
Confidence 76 6678888888888754 334444443211 1245577899999999999999999999999999998876
Q ss_pred hh----HHHhhHHHHHHHHhcC-CChHHHHHHHHHHHHHHhhhC
Q 009632 391 ID----LLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLG 429 (530)
Q Consensus 391 ~~----~~~~~l~~~l~~~~~~-~~~~~R~~~~~~l~~l~~~~~ 429 (530)
.. .+.+.++|.+.+.... .++.+|..+-.++..+-...+
T Consensus 284 ~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~ 327 (986)
T 2iw3_A 284 DPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGN 327 (986)
T ss_dssp CHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhc
Confidence 43 3456777777765544 579999999888888866533
No 76
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.33 E-value=1e-10 Score=101.99 Aligned_cols=185 Identities=14% Similarity=0.065 Sum_probs=127.0
Q ss_pred hhHhHhHhccCCcHHHHHHHHHHHHhhccccCH---HHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch---hH
Q 009632 320 ILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DL 393 (530)
Q Consensus 320 l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~ 393 (530)
..|.+..+++++++.+|..++..+..++..-.. .......+|.+..+|+++++.+|..++.++++++..-.. ..
T Consensus 13 ~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (210)
T 4db6_A 13 ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 92 (210)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred hhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 344555555555566666555555555432111 112235677788888888888888888888887632111 11
Q ss_pred HHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCh---hhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCh-
Q 009632 394 LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP- 469 (530)
Q Consensus 394 ~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~---~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~- 469 (530)
.....+|.+..++++++..+|..++.+++.++..... .......+|.+.+++.+++..+|..|+.+|+.++.....
T Consensus 93 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~ 172 (210)
T 4db6_A 93 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 172 (210)
T ss_dssp HHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHH
Confidence 2245788888888888899999999999988752211 112345788999999999999999999999998764211
Q ss_pred --hHHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhh
Q 009632 470 --EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAP 504 (530)
Q Consensus 470 --~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~ 504 (530)
.......++.+.+++.+++..+|..|+.++.+++.
T Consensus 173 ~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 173 KQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 11235678999999999999999999999998864
No 77
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.32 E-value=7.4e-11 Score=102.90 Aligned_cols=186 Identities=12% Similarity=0.080 Sum_probs=132.1
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc---hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc---
Q 009632 162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP--- 235 (530)
Q Consensus 162 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--- 235 (530)
....+.+..+++++++.+|..++.+|..++..-+. .......+|.+.+++.++++.+|..|+.+++.++..-+.
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 34567788888999999999999999999853222 222345789999999999999999999999998754322
Q ss_pred hhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC---cccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC
Q 009632 236 QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN 312 (530)
Q Consensus 236 ~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~ 312 (530)
.......+|.+..++++.++.+|..++.+|++++..... .......+|.+.+++.++++++|..++.+|..++....
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 170 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (210)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCc
Confidence 122345889999999999999999999999998742111 11234578889999998889999999999998876321
Q ss_pred HH---HHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhc
Q 009632 313 PE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMA 347 (530)
Q Consensus 313 ~~---~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~ 347 (530)
.. ......++.+.+++.+.+..+|..++.++..++
T Consensus 171 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 171 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 11 112234555666666666666666666665554
No 78
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.31 E-value=7.9e-09 Score=112.94 Aligned_cols=499 Identities=10% Similarity=0.033 Sum_probs=280.7
Q ss_pred CCCCC--CCcCcHHHHHHHhcCh--hHHHHHHHhhcHHHHHHhhChHhhhhccccccccccCCchHHHHHHHHHHhcccc
Q 009632 1 MAMVD--EPLYPIAVLIDELKND--DIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIP 76 (530)
Q Consensus 1 ~~~~~--~~~~~~~~l~~~l~~~--~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~~~~~l~~~~~ 76 (530)
|.|+| +.+..+..+++.+.++ +...|..|.+.|.++-.. |+ .+..+.-.+. ..+.++.+|..++..|.+.++
T Consensus 1 ~~~~~~~~~~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~--p~-~~~~~~~~L~-~~s~~~~vR~~A~~~Lk~~I~ 76 (1204)
T 3a6p_A 1 MAMDQVNALCEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEK--CP-ICVPCGLRLA-EKTQVAIVRHFGLQILEHVVK 76 (1204)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH--CT-THHHHHHHHT-STTSCHHHHHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhC--ch-HHHHHHHHHH-ccCCCHHHHHHHHHHHHHHHH
Confidence 45433 3455566777777766 777899999988876432 11 1112222222 234578999999999987654
Q ss_pred c----CCCcc---chhcchhHHHhhhc---ccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHH
Q 009632 77 Y----VGGVE---HAHVLLPPLETLCT---VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSAC 146 (530)
Q Consensus 77 ~----~~~~~---~~~~l~~~l~~l~~---d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~ 146 (530)
. +..++ ....++..+..... +.+..||.....++..+++.--+ ..++.+++.+..+.+. +...+..+.
T Consensus 77 ~~W~~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p-~~Wp~ll~~L~~~~~~-~~~~~e~~L 154 (1204)
T 3a6p_A 77 FRWNGMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP-QHWPDMLIELDTLSKQ-GETQTELVM 154 (1204)
T ss_dssp HSGGGSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHHHHHT-CHHHHHHHH
T ss_pred HhcccCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHhcC-CHHHHHHHH
Confidence 2 22111 12344444433221 25689999999999999987444 2355566666666654 234455555
Q ss_pred hHhhhhcCC------CChHH-----------HHHHHHHHHhhcCC-------------------CChhHHHHHHHHHHHH
Q 009632 147 GLFHIAYPS------APDIL-----------KTELRSIYTQLCQD-------------------DMPMVRRSAASNLGKF 190 (530)
Q Consensus 147 ~~l~~l~~~------~~~~~-----------~~~l~~~l~~l~~d-------------------~~~~vR~~a~~~l~~l 190 (530)
.++..+.+. ..... .+.+++.+...+.+ .+..++..+++++..+
T Consensus 155 ~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~ 234 (1204)
T 3a6p_A 155 FILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGY 234 (1204)
T ss_dssp HHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHH
Confidence 555554321 11111 12455555444432 2345677777777766
Q ss_pred HhhhcchhhH---HHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc-hh---hhhcc----HHHHHHhc--------C
Q 009632 191 AATVEPAHLK---TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP-QD---CVAHI----LPVIVNFS--------Q 251 (530)
Q Consensus 191 ~~~~~~~~~~---~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-~~---~~~~~----~~~l~~~~--------~ 251 (530)
....+..... ..+++.+..++.+ +.+|..|++++..+.....+ +. +...+ +..+.... .
T Consensus 235 l~Wi~~~~i~~~~~~ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~ 312 (1204)
T 3a6p_A 235 IDWVSMSHITAENCKLLEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLV 312 (1204)
T ss_dssp TTTSCHHHHHTTTSHHHHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCC
T ss_pred HhccCHHHHHhccchHHHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCc
Confidence 6554433322 2477777777765 57999999999999875432 21 11211 11122221 2
Q ss_pred CCCHHHHHHHHHHHHHHHHHhC----------CcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC--H-H---H
Q 009632 252 DKSWRVRYMVANQLYELCEAVG----------PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN--P-E---L 315 (530)
Q Consensus 252 d~~~~vr~~~~~~l~~l~~~~~----------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~--~-~---~ 315 (530)
+.+..+++..++.+..++..+. .......+++.++.++.+++.+|-..++.....+.+... . + .
T Consensus 313 e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~ 392 (1204)
T 3a6p_A 313 EKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLA 392 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccHHHHH
Confidence 2345667777777766653321 122235688999999999888888887777766665432 1 1 2
Q ss_pred HHhhhhHhHhH---hc---cCC---------------------cHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhc
Q 009632 316 AIQHILPCVKE---LS---SDS---------------------SQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK 368 (530)
Q Consensus 316 ~~~~l~~~l~~---~~---~d~---------------------~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~ 368 (530)
+...+++.+.. -+ .+. -+..|......+..++...+ ......+.+.+...+.
T Consensus 393 ~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p-~~~l~~v~~~l~~~l~ 471 (1204)
T 3a6p_A 393 IIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDP-KTSFQMAGEWLKYQLS 471 (1204)
T ss_dssp HHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHh
Confidence 33444444411 01 000 02456655555555554432 3334445555544443
Q ss_pred CC-------------------------ChHHHHHHHHhhHHhhhhhc----hhHHHhhHHHHHHHHh---cCCChHHHHH
Q 009632 369 DE-------------------------FPDVRLNIISKLDQVNQVIG----IDLLSQSLLPAIVELA---EDRHWRVRLA 416 (530)
Q Consensus 369 d~-------------------------~~~vr~~a~~~l~~l~~~~~----~~~~~~~l~~~l~~~~---~~~~~~~R~~ 416 (530)
+. .+...++....+..+...+. .+.....+.+.+...+ ...++.+|..
T Consensus 472 ~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~ 551 (1204)
T 3a6p_A 472 TFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNFDTKDPLILSC 551 (1204)
T ss_dssp CC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHH
T ss_pred hhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhCCCCChHHHHH
Confidence 21 11233444444444443331 0111112344444442 3357889999
Q ss_pred HHHHHHHHHhhhCh-hhHHHHHHHHHHHHhcC------------CcHHHHHHHHHHHHHHHHHhChhHH--hhhhHHHHH
Q 009632 417 IIEYIPLLASQLGV-GFFDDKLGALCMQWLQD------------KVYSIRDAAANNLKRLAEEFGPEWA--MQHITPQVL 481 (530)
Q Consensus 417 ~~~~l~~l~~~~~~-~~~~~~~~~~l~~~l~d------------~~~~Vr~~a~~~l~~l~~~~~~~~~--~~~i~~~l~ 481 (530)
.+.+++.+...+.. ..+...++..++..+.+ .+..||..|+.++..++..++.... .+.+...+.
T Consensus 552 ~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~ 631 (1204)
T 3a6p_A 552 VLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVK 631 (1204)
T ss_dssp HHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99999988877652 23455667777766666 3558999999999999998865432 244555555
Q ss_pred hhccCC---ChHHHHHHHHHHHHHhhhcCh
Q 009632 482 EMINNP---HYLYRMTILRAISLLAPVMGS 508 (530)
Q Consensus 482 ~~~~d~---~~~vr~~a~~~l~~i~~~~~~ 508 (530)
..+... +..-+....++++.++..+++
T Consensus 632 ~~l~~~~~l~~~e~~~L~eal~~ia~~~~~ 661 (1204)
T 3a6p_A 632 QLLSNELLLTQMEKCALMEALVLISNQFKN 661 (1204)
T ss_dssp HHHHSTTTSCHHHHHHHHHHHHHHHGGGCC
T ss_pred HHHhCcccccHHHHHHHHHHHHHHhccCCC
Confidence 555433 355677788888888655543
No 79
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.29 E-value=3.8e-11 Score=124.46 Aligned_cols=302 Identities=13% Similarity=0.141 Sum_probs=213.8
Q ss_pred CCCCcCcHHHHHHHhcChhHHHHHHHhhcHHHHHHhhChH-hhhhcccccccc-ccCCchHHHHHHHHHHhcccccCCC-
Q 009632 4 VDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEE-RTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGG- 80 (530)
Q Consensus 4 ~~~~~~~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~-~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~- 80 (530)
+++++..+..+++.+...+...|..+...+..+...-+.. .....++..+.. +.+.... ..+...++.+....+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~ 86 (986)
T 2iw3_A 9 SQQSIKVLEELFQKLSVATADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLS 86 (986)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCC
T ss_pred ccchHHHHHHHHhhccccchhHHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCC
Confidence 4455666777888888766777788887777654321111 111123333433 3343333 5566666666655442
Q ss_pred ccchh---cchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhc-CCccchhHHHHhHhhhhcCCC
Q 009632 81 VEHAH---VLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAA-GEWFTARVSACGLFHIAYPSA 156 (530)
Q Consensus 81 ~~~~~---~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~-~~~~~~r~~~~~~l~~l~~~~ 156 (530)
..... .++|.+...+.|+...||.+|-.+...+++.+++... ..++|.+...+. ...|..+..+..++..+....
T Consensus 87 ~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~ 165 (986)
T 2iw3_A 87 PSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA 165 (986)
T ss_dssp TTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS
T ss_pred CCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh
Confidence 22233 3566677778899999999999999999999999887 445555555544 447999999999999999877
Q ss_pred ChH---HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhc
Q 009632 157 PDI---LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLL 233 (530)
Q Consensus 157 ~~~---~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~ 233 (530)
+++ ..++++|.+.+.+.|.-++|++++..++..++..+++..+ ..++|.+++.+.+++. |-+ ++..|+... ++
T Consensus 166 ~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~-~~~~~~~~~~~~~p~~-~~~-~~~~l~~~t-fv 241 (986)
T 2iw3_A 166 KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI-ERFIPSLIQCIADPTE-VPE-TVHLLGATT-FV 241 (986)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT-GGGHHHHHHHHHCTTH-HHH-HHHHHTTCC-CC
T ss_pred HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch-hhhHHHHHHHhcChhh-hHH-HHHHhhcCe-eE
Confidence 554 5789999999999999999999999999999999888665 4477999999998853 333 233332211 01
Q ss_pred C--chhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcc----cccchHHHHHHhcC-CCcHHHHHHHHHHHHH
Q 009632 234 E--PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP----TRMDLVPAYVRLLR-DNEAEVRIAAAGKVTK 306 (530)
Q Consensus 234 ~--~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~ 306 (530)
. .+.....+.|.+...+++.+..+++.++-.+.++++...+.. +...++|.+.+... -.+|++|..+-+++..
T Consensus 242 ~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~ 321 (986)
T 2iw3_A 242 AEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKT 321 (986)
T ss_dssp SCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHH
T ss_pred eeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHH
Confidence 1 122355689999999999999999999999999998877643 35566666666553 4569999999999988
Q ss_pred HHHhhC
Q 009632 307 FCRILN 312 (530)
Q Consensus 307 ~~~~~~ 312 (530)
+....+
T Consensus 322 l~~~~~ 327 (986)
T 2iw3_A 322 LRRVGN 327 (986)
T ss_dssp HHHHHT
T ss_pred HHHhhc
Confidence 866543
No 80
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.27 E-value=5.5e-08 Score=103.27 Aligned_cols=306 Identities=9% Similarity=0.053 Sum_probs=173.9
Q ss_pred HHHHHHHHHhhcC-CchhHHHHHHHHHHHHhhhcCchhh-hhccHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHhCCccc
Q 009632 201 TDIMSIFEDLTQD-DQDSVRLLAVEGCAALGKLLEPQDC-VAHILPVI-VNFSQDKSWRVRYMVANQLYELCEAVGPEPT 277 (530)
Q Consensus 201 ~~l~~~l~~~~~d-~~~~vr~~a~~~l~~l~~~~~~~~~-~~~~~~~l-~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~ 277 (530)
+.+++.+.+.+.. .++.+...+++++..+..-++...+ .+.+++.+ ...+. ++..|..++++|..+...-. +.+
T Consensus 205 ~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~~~~L~--~~~~r~aA~dcL~eIv~k~~-~~~ 281 (1073)
T 3gjx_A 205 SQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYKFLN--VPMFRNVSLKCLTEIAGVSV-SQY 281 (1073)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHHHTSS--SHHHHHHHHHHHHHHHHSCS-GGG
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHHHhccchHHHHHHHHhcC--ChHHHHHHHHHHHHHHhccc-cch
Confidence 3455666655543 4567778888888888877665432 34577766 45554 46799999999998876411 111
Q ss_pred ccchHHHH---H----Hhc-------------CCCcHHHHHHHHHHHHHHHHhh------CHH--HHHhhhhHhHhHhcc
Q 009632 278 RMDLVPAY---V----RLL-------------RDNEAEVRIAAAGKVTKFCRIL------NPE--LAIQHILPCVKELSS 329 (530)
Q Consensus 278 ~~~l~~~l---~----~~l-------------~d~~~~vr~~a~~~l~~~~~~~------~~~--~~~~~l~~~l~~~~~ 329 (530)
.+.+...+ + +.+ .+.+.+.-.+....+..+++.. +++ ......+.++..+..
T Consensus 282 ~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~ 361 (1073)
T 3gjx_A 282 EEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSE 361 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhC
Confidence 12221111 1 111 2222333233333333333221 111 111223334455555
Q ss_pred CCcHHHHHHHHHHHHhhccccC----------------------H-----HHHHHhHHHHHHHhhcCCC----------h
Q 009632 330 DSSQHVRSALASVIMGMAPLLG----------------------K-----DATIEQLLPIFLSLLKDEF----------P 372 (530)
Q Consensus 330 d~~~~vr~~~~~~l~~l~~~~~----------------------~-----~~~~~~l~~~l~~~l~d~~----------~ 372 (530)
.++..+-......+..+...+- . ..+...+...+..-+.-+. .
T Consensus 362 ~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge 441 (1073)
T 3gjx_A 362 VEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGE 441 (1073)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccch
Confidence 6666666666666555433211 0 1122233333333332110 0
Q ss_pred ------------HHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcC--CChHHHHHHHHHHHHHHhhhCh---hhHHH
Q 009632 373 ------------DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLGV---GFFDD 435 (530)
Q Consensus 373 ------------~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~--~~~~~R~~~~~~l~~l~~~~~~---~~~~~ 435 (530)
..+...-+++..+. .++.+...+.+++.+.+.... .+|..+.+++.+++.++..+.. +.+..
T Consensus 442 ~~re~~~d~~~~~ly~~mrd~L~~lt-~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp 520 (1073)
T 3gjx_A 442 VVREFMKDTDSINLYKNMRETLVYLT-HLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLV 520 (1073)
T ss_dssp EEEEECSSCHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHH
Confidence 12222223333332 334444445666766655443 4699999999999999877764 24667
Q ss_pred HHHHHHHHHhcCC-----cHHHHHHHHHHHHHHHHHhChhH-HhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcChH
Q 009632 436 KLGALCMQWLQDK-----VYSIRDAAANNLKRLAEEFGPEW-AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE 509 (530)
Q Consensus 436 ~~~~~l~~~l~d~-----~~~Vr~~a~~~l~~l~~~~~~~~-~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~~ 509 (530)
.+++.+..+...+ .+-|+...+.++|+..+.+..++ ....++..+...+.+++..|+.+|+.++..+++.++..
T Consensus 521 ~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~ 600 (1073)
T 3gjx_A 521 TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRH 600 (1073)
T ss_dssp HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 7788887776433 44577777789998877764433 23667777888889999999999999999999887754
Q ss_pred H
Q 009632 510 I 510 (530)
Q Consensus 510 ~ 510 (530)
.
T Consensus 601 l 601 (1073)
T 3gjx_A 601 F 601 (1073)
T ss_dssp G
T ss_pred H
Confidence 3
No 81
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.26 E-value=1.1e-07 Score=100.89 Aligned_cols=493 Identities=8% Similarity=0.042 Sum_probs=285.3
Q ss_pred CcCcHHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhccccccccccCCchHHHHHHHHHHhccccc----CCCcc
Q 009632 7 PLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPY----VGGVE 82 (530)
Q Consensus 7 ~~~~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~~~~~l~~~~~~----~~~~~ 82 (530)
++..+..++..+.++++..|..|-+.|.++-. ....+..+...+. .+.++++|..++..|.+.++. ++..+
T Consensus 26 Dv~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~---sp~aw~~~~~iL~--~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~ 100 (1073)
T 3gjx_A 26 DINLLDNVVNCLYHGEGAQQRMAQEVLTHLKE---HPDAWTRVDTILE--FSQNMNTKYYGLQILENVIKTRWKILPRNQ 100 (1073)
T ss_dssp SHHHHHHHHHTTTCSSHHHHHHHHHHHHTSSC---CSCHHHHHTCC-----CCSHHHHHHHHHHHHHHHHHTGGGSCHHH
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHc---CchHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHhhhhhCCHHH
Confidence 34467788999999999999999988876522 1223444444443 245789999999999766552 22111
Q ss_pred ---chhcchhHHHhhhcc-----cchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcC
Q 009632 83 ---HAHVLLPPLETLCTV-----EETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYP 154 (530)
Q Consensus 83 ---~~~~l~~~l~~l~~d-----~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~ 154 (530)
....++..+.....+ .++.++...+.++..+++..-++. ++.+++.+....+. ++..+.....++..+.+
T Consensus 101 ~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~-Wp~fi~dLv~~~~~-~~~~~~~~L~IL~~L~E 178 (1073)
T 3gjx_A 101 CEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKH-WPTFISDIVGASRT-SESLCQNNMVILKLLSE 178 (1073)
T ss_dssp HHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTT-CTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhh-ccHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence 234566666554433 357788888999999988643332 33344444444432 12233344444444332
Q ss_pred CC--------ChH-----------HHHHHHHHHHhhcC-CCChhHHHHHHHHHHHHHhhhcchhh-HHHHHHHH-HHhhc
Q 009632 155 SA--------PDI-----------LKTELRSIYTQLCQ-DDMPMVRRSAASNLGKFAATVEPAHL-KTDIMSIF-EDLTQ 212 (530)
Q Consensus 155 ~~--------~~~-----------~~~~l~~~l~~l~~-d~~~~vR~~a~~~l~~l~~~~~~~~~-~~~l~~~l-~~~~~ 212 (530)
.+ +.. ..+.+++.+...+. ..++.+...++++++.+...++-..+ .+.+++.+ ..++.
T Consensus 179 EV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~~~~L~ 258 (1073)
T 3gjx_A 179 EVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYKFLN 258 (1073)
T ss_dssp HHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHHHTSS
T ss_pred HHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHHHhccchHHHHHHHHhcC
Confidence 21 111 12345555555443 45778889999999999988765433 34577766 46664
Q ss_pred CCchhHHHHHHHHHHHHhhhcCchhhhhc-------cHHHHHHhc-------------CCCCHHHHHHHHHHHHHHHHHh
Q 009632 213 DDQDSVRLLAVEGCAALGKLLEPQDCVAH-------ILPVIVNFS-------------QDKSWRVRYMVANQLYELCEAV 272 (530)
Q Consensus 213 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-------~~~~l~~~~-------------~d~~~~vr~~~~~~l~~l~~~~ 272 (530)
++..|..|++++..+...-.+ .+.+. ++..+...+ .+.+...-...+..+..+++..
T Consensus 259 --~~~~r~aA~dcL~eIv~k~~~-~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~ 335 (1073)
T 3gjx_A 259 --VPMFRNVSLKCLTEIAGVSVS-QYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEH 335 (1073)
T ss_dssp --SHHHHHHHHHHHHHHHHSCSG-GGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred --ChHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHH
Confidence 467999999999998765211 11111 111111111 2233344444555555555432
Q ss_pred CC----c-cccc---chHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH--------------------HHHhhhhHhH
Q 009632 273 GP----E-PTRM---DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--------------------LAIQHILPCV 324 (530)
Q Consensus 273 ~~----~-~~~~---~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~--------------------~~~~~l~~~l 324 (530)
.. . .... ..+..++.+...++.++-+.++.....+...+-.+ .....+.|.+
T Consensus 336 ~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~ 415 (1073)
T 3gjx_A 336 GQLLEKRLNLREALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVL 415 (1073)
T ss_dssp HHHHHHCGGGHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHH
T ss_pred HHHHhcCccchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHH
Confidence 11 1 1111 22333455556677788777777665555432100 0111122222
Q ss_pred hHh-------cc---------------------CCcH-HHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcC--CChH
Q 009632 325 KEL-------SS---------------------DSSQ-HVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKD--EFPD 373 (530)
Q Consensus 325 ~~~-------~~---------------------d~~~-~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d--~~~~ 373 (530)
.++ +. |.+. ..+...-.++..+. .++.+.....+.+.+...+.. .+|.
T Consensus 416 ~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt-~l~~~~~~~i~~~~l~~~~~~~~~sW~ 494 (1073)
T 3gjx_A 416 SKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLT-HLDYVDTEIIMTKKLQNQVNGTEWSWK 494 (1073)
T ss_dssp HHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHHHTSCCCCHH
T ss_pred HHHHHHHHHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHhcCCCCCHH
Confidence 111 11 1111 12222223333332 334455566666767666553 4699
Q ss_pred HHHHHHHhhHHhhhhhchh---HHHhhHHHHHHHHhcCC-----ChHHHHHHHHHHHHHHhhhCh-hhHHHHHHHHHHHH
Q 009632 374 VRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDR-----HWRVRLAIIEYIPLLASQLGV-GFFDDKLGALCMQW 444 (530)
Q Consensus 374 vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~~~-----~~~~R~~~~~~l~~l~~~~~~-~~~~~~~~~~l~~~ 444 (530)
.+++++-+++.+.+.+.++ .+...+++.|..+...+ ...+|...+..+|.....+.. ..+...++..+++.
T Consensus 495 ~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~ 574 (1073)
T 3gjx_A 495 NLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEF 574 (1073)
T ss_dssp HHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHH
Confidence 9999999999998776642 34466777777666544 234666666788777665532 22455677778888
Q ss_pred hcCCcHHHHHHHHHHHHHHHHHhChhHHh----------hhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcChHH
Q 009632 445 LQDKVYSIRDAAANNLKRLAEEFGPEWAM----------QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI 510 (530)
Q Consensus 445 l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~----------~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~~~ 510 (530)
+.|+++.|..+|+.++..+++.++..... +.++..+.....+-..+-.....++++.++...|.+.
T Consensus 575 m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~~ 650 (1073)
T 3gjx_A 575 MHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQT 650 (1073)
T ss_dssp TTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCHH
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCcc
Confidence 99999999999999999999998765422 2233333334445466677789999999999988643
No 82
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=99.18 E-value=2.4e-09 Score=93.81 Aligned_cols=139 Identities=12% Similarity=0.133 Sum_probs=119.2
Q ss_pred cCCCChhHHHHHHHHHHHHHhhhcc------hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHH
Q 009632 172 CQDDMPMVRRSAASNLGKFAATVEP------AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPV 245 (530)
Q Consensus 172 ~~d~~~~vR~~a~~~l~~l~~~~~~------~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ 245 (530)
+.|+++.|-..+++.+..+...+.. +.....++|.+.+-++|+.+.||..+-..+..+...+++. .+.++
T Consensus 96 ~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~----~v~~~ 171 (266)
T 2of3_A 96 FFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL----KMTPM 171 (266)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH----HHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHH----HHHHH
Confidence 4488999999999999998876654 2224678999999999999999999999998888877654 36777
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchH---HHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHH
Q 009632 246 IVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLV---PAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA 316 (530)
Q Consensus 246 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~---~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~ 316 (530)
+.+.+++++|++|..++..++.+.+..|... ...+ |.+.+++.|.+..||.+|+.++..+....|...+
T Consensus 172 l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~--~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~ 243 (266)
T 2of3_A 172 LLDALKSKNARQRSECLLVIEYYITNAGISP--LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMW 243 (266)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG--GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHccCCHHHHHHHHHHHHHHHHhcCCCc--cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHH
Confidence 7778899999999999999999999999763 4567 9999999999999999999999999998887643
No 83
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=99.17 E-value=6.8e-10 Score=104.23 Aligned_cols=257 Identities=12% Similarity=0.067 Sum_probs=171.1
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccH
Q 009632 164 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHIL 243 (530)
Q Consensus 164 l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 243 (530)
+.+.+..-+-|+.|++|+.|+.+|.++.+..+...-.. ...+.+-.+|..++-++..++...++.. +
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~--------~~~N~DLAvRLLCVLALDRFGDYVSDqV----V- 241 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQ--------IRVDSKLFSKIYEILVTDKFNDFVDDRT----V- 241 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CC--------CCCCTTHHHHHHHHHHHBCCBBCSSSSC----B-
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCcee--------ccccHHHHHHHHHHHHhccccccccCee----e-
Confidence 56667777789999999999999999998765411000 0112244567766666666666555432 2
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHh
Q 009632 244 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPC 323 (530)
Q Consensus 244 ~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~ 323 (530)
..||++++++|+.+ ..+..+ -.++..++..+..+.|+||.+++-.+..+...+.. .+.+++.
T Consensus 242 -----------APVRETaAQtLGaL-~hLp~e---~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~---Ld~Vv~a 303 (800)
T 3oc3_A 242 -----------APVRDAAAYLLSRI-YPLIGP---NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED---KDGLCRK 303 (800)
T ss_dssp -----------CHHHHHHHHHHHHH-TTTSCS---CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC---HHHHHHH
T ss_pred -----------eehHHHHHHHHHHH-HhCChh---HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH---HHHHHHH
Confidence 23899999999998 666655 24455555566778899999999888887333332 4677888
Q ss_pred HhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHH
Q 009632 324 VKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV 403 (530)
Q Consensus 324 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~ 403 (530)
+...+.|.+..||..++.++..++..-.-......++..+.++ |+-...-......|+.++..-......+.++|.+.
T Consensus 304 VL~GL~D~DDDVRAVAAetLiPIA~p~~l~~LL~iLWd~L~~L--DDLSASTgSVMdLLAkL~s~p~~a~~dp~LVPRL~ 381 (800)
T 3oc3_A 304 LVSLLSSPDEDIKLLSAELLCHFPITDSLDLVLEKCWKNIESE--ELISVSKTSNLSLLTKIYRENPELSIPPERLKDIF 381 (800)
T ss_dssp HHHHTTCSSHHHHHHHHHHHTTSCCSSTHHHHHHHHHHHHHTC--CSCCTTHHHHHHHHHHHHHHCTTCCCCSGGGGGTG
T ss_pred HHhhcCCcccHHHHHHHHHhhhhcchhhHHHHHHHHHHHhhhh--cccchhhHHHHHHHHHHHcCCcccccChHHHHHHH
Confidence 8888899999999999999988882212233333444444433 33334445555666666553221112247888888
Q ss_pred HHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHH-HHHHHhcCCcHHHHHHHHHHHH
Q 009632 404 ELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGA-LCMQWLQDKVYSIRDAAANNLK 461 (530)
Q Consensus 404 ~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~-~l~~~l~d~~~~Vr~~a~~~l~ 461 (530)
.++.++-..||.+++.++..+. . ..++. ++.+++-++..+|+..+.+++.
T Consensus 382 PFLRHtITSVR~AVL~TL~tfL---~-----~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 382 PCFTSPVPEVRTSILNMVKNLS---E-----ESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp GGGTCSSHHHHHHHHHHTTTCC---C-----HHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred hhhcCCcHHHHHHHHHHHHHHH---h-----hhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 8899999999999999997765 1 12333 3455677899999999999885
No 84
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=99.15 E-value=9.3e-10 Score=101.41 Aligned_cols=291 Identities=13% Similarity=0.023 Sum_probs=167.3
Q ss_pred CCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhc
Q 009632 154 PSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLL 233 (530)
Q Consensus 154 ~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~ 233 (530)
..++......+..-+.+++..++...|+....++..+++. +++. . -+.+.+.+-++|+++.+|..|+.+++.+..
T Consensus 59 ~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~-i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~-- 133 (355)
T 3tjz_B 59 EHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDV-I-IVTSSLTKDMTGKEDSYRGPAVRALCQITD-- 133 (355)
T ss_dssp CCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCG-G-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC--
T ss_pred CCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHH-H-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC--
Confidence 4455556667778888899999999999999999888876 3333 2 678889999999999999999999998854
Q ss_pred CchhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH
Q 009632 234 EPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP 313 (530)
Q Consensus 234 ~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~ 313 (530)
....+.+.+.+.+.+.|+++.||..|+-+...+....+ +. .+.+++.+.+++.|.++-|..+|+..+..+.+.- .
T Consensus 134 --~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~p-e~-v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d-~ 208 (355)
T 3tjz_B 134 --STMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSF-DV-VKRWVNEAQEAASSDNIMVQYHALGLLYHVRKND-R 208 (355)
T ss_dssp --TTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCH-HH-HHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC-H
T ss_pred --HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCH-HH-HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc-h
Confidence 24567799999999999999999999988877754322 22 3467888888999999999999999888887532 1
Q ss_pred HHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhH
Q 009632 314 ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL 393 (530)
Q Consensus 314 ~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 393 (530)
. ....+++.+... .-.++......++.+..++..- .......+.+.+..+|+..++.|...|+.++-.+.. .+..
T Consensus 209 ~-a~~kLv~~l~~~-~l~~~~~q~~llr~l~~~~~~d-~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~-~~~~- 283 (355)
T 3tjz_B 209 L-AVSKMISKFTRH-GLKSPFAYCMMIRVASRQLEDE-DGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG-CSAK- 283 (355)
T ss_dssp H-HHHHHHHHHHSS-CCSCHHHHHHHHHHHTCC------------------CCCCCSSHHHHHHHHHHHTC---------
T ss_pred H-HHHHHHHHHhcC-CCcChHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC-CCHH-
Confidence 1 223444444321 1123444444555554443321 012356788888999999999999999888877644 2211
Q ss_pred HHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 009632 394 LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLK 461 (530)
Q Consensus 394 ~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~ 461 (530)
......+.+..++++++..+|..++..+..++...... ....-.-+..+++|++..++..|+-+|-
T Consensus 284 ~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~--v~~~n~~ie~li~d~n~sI~t~Aittll 349 (355)
T 3tjz_B 284 ELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSA--VTACNLDLENLVTDANRSIATLAITTLL 349 (355)
T ss_dssp ----CCCTHHHHHHSSSSSSHHHHHHCC----------------------------------------
T ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHH--HHHHHHHHHHHccCCcHhHHHHHHHHhh
Confidence 11233445556677777788888888888887643321 1223344667778888777777666553
No 85
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.14 E-value=1e-08 Score=95.87 Aligned_cols=216 Identities=12% Similarity=0.029 Sum_probs=156.6
Q ss_pred cHHHHHHHHHHHHHHHHhhC-HH-HH--HhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCH---HHH-HHhHHHHHH
Q 009632 293 EAEVRIAAAGKVTKFCRILN-PE-LA--IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DAT-IEQLLPIFL 364 (530)
Q Consensus 293 ~~~vr~~a~~~l~~~~~~~~-~~-~~--~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~-~~~l~~~l~ 364 (530)
+++++..|+.+|..++..-. .. .+ ....+|.+..++.+.+..++..++..+..++..-+. ..+ ....+|.+.
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv 176 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALM 176 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHH
Confidence 46788999999988875322 11 22 134588888888888899999999988888653121 111 234578888
Q ss_pred Hh-hcCCChHHHHHHHHhhHHhhhhh-c-hhHH--HhhHHHHHHHHhcCCCh----HHHHHHHHHHHHHHhhh--Chhh-
Q 009632 365 SL-LKDEFPDVRLNIISKLDQVNQVI-G-IDLL--SQSLLPAIVELAEDRHW----RVRLAIIEYIPLLASQL--GVGF- 432 (530)
Q Consensus 365 ~~-l~d~~~~vr~~a~~~l~~l~~~~-~-~~~~--~~~l~~~l~~~~~~~~~----~~R~~~~~~l~~l~~~~--~~~~- 432 (530)
.+ ++..+..++..++.++.++...- + ...+ ....+|.|.+++.+.+. .++..++.++..++..+ +.+.
T Consensus 177 ~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~ 256 (354)
T 3nmw_A 177 ECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHR 256 (354)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHH
Confidence 86 46678899999999998887622 1 1122 25688999999876543 58999999999988631 2222
Q ss_pred --H-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC---hhHHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhc
Q 009632 433 --F-DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG---PEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVM 506 (530)
Q Consensus 433 --~-~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~---~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~ 506 (530)
+ ....+|.+..++.+....+++.|+.+|..++..-. ........+|.|.+++.+++..+|..|+.++.+++..-
T Consensus 257 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~ 336 (354)
T 3nmw_A 257 QILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 336 (354)
T ss_dssp HHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 1 13368999999999999999999999999873211 11223567999999999999999999999999999875
Q ss_pred Ch
Q 009632 507 GS 508 (530)
Q Consensus 507 ~~ 508 (530)
+.
T Consensus 337 ~~ 338 (354)
T 3nmw_A 337 PA 338 (354)
T ss_dssp CG
T ss_pred HH
Confidence 43
No 86
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=99.09 E-value=7.3e-09 Score=97.42 Aligned_cols=254 Identities=13% Similarity=0.013 Sum_probs=177.2
Q ss_pred HHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhhhhccccccccccCCchHHHHHHHHHHhcccccCCCccchhcchhH
Q 009632 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPP 90 (530)
Q Consensus 11 ~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~ 90 (530)
...|+..|.++.|..|.+|..+|.++.+..|....+. ...+.+-.+|.-..-+|-+|+.++++.
T Consensus 176 cE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~-------~~~N~DLAvRLLCVLALDRFGDYVSDq--------- 239 (800)
T 3oc3_A 176 FEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQ-------IRVDSKLFSKIYEILVTDKFNDFVDDR--------- 239 (800)
T ss_dssp THHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CC-------CCCCTTHHHHHHHHHHHBCCBBCSSSS---------
T ss_pred HHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCcee-------ccccHHHHHHHHHHHHhccccccccCe---------
Confidence 4678899999999999999999999988876533222 211226677888888888888877731
Q ss_pred HHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChHHHHHHHHHHHh
Q 009632 91 LETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQ 170 (530)
Q Consensus 91 l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~ 170 (530)
--..||+.|+++|+.+ ..++++ .. ++..+......+.|.+|+.+...+..+...+.. .+.+++.+..
T Consensus 240 -------VVAPVRETaAQtLGaL-~hLp~e--~~-IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~--Ld~Vv~aVL~ 306 (800)
T 3oc3_A 240 -------TVAPVRDAAAYLLSRI-YPLIGP--ND-IIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED--KDGLCRKLVS 306 (800)
T ss_dssp -------CBCHHHHHHHHHHHHH-TTTSCS--CC-HHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC--HHHHHHHHHH
T ss_pred -------eeeehHHHHHHHHHHH-HhCChh--HH-HHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH--HHHHHHHHHh
Confidence 2478999999999999 888776 22 232232344667899999887777766333322 6888999999
Q ss_pred hcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCch--hHHHHHHHHHHHHhhhcCchhhhhccHHHHHH
Q 009632 171 LCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQD--SVRLLAVEGCAALGKLLEPQDCVAHILPVIVN 248 (530)
Q Consensus 171 l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~--~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ 248 (530)
.+.|++..||..|+.+|..++ .+ ...+.++..+...+.+-++ .--...+..|+.+..+-......+.++|.+..
T Consensus 307 GL~D~DDDVRAVAAetLiPIA---~p-~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~dp~LVPRL~P 382 (800)
T 3oc3_A 307 LLSSPDEDIKLLSAELLCHFP---IT-DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSIPPERLKDIFP 382 (800)
T ss_dssp HTTCSSHHHHHHHHHHHTTSC---CS-STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCCCSGGGGGTGG
T ss_pred hcCCcccHHHHHHHHHhhhhc---ch-hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccccChHHHHHHHh
Confidence 999999999999999999988 22 2345556655555554322 22333455566665543322223478888888
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHH-HHHHhcCCCcHHHHHHHHHHHH
Q 009632 249 FSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVP-AYVRLLRDNEAEVRIAAAGKVT 305 (530)
Q Consensus 249 ~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~-~l~~~l~d~~~~vr~~a~~~l~ 305 (530)
.+.+.-..||.++.+++..+. ...++. .+.+++-+++++|+..+.+...
T Consensus 383 FLRHtITSVR~AVL~TL~tfL--------~~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 383 CFTSPVPEVRTSILNMVKNLS--------EESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp GGTCSSHHHHHHHHHHTTTCC--------CHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred hhcCCcHHHHHHHHHHHHHHH--------hhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 999999999999999887665 223333 3455667888899998888774
No 87
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.09 E-value=7.2e-09 Score=96.86 Aligned_cols=215 Identities=12% Similarity=0.074 Sum_probs=153.9
Q ss_pred CHHHHHHHHHHHHHHHHHhC--Cccc--ccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH---H-HHhhhhHhHh
Q 009632 254 SWRVRYMVANQLYELCEAVG--PEPT--RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---L-AIQHILPCVK 325 (530)
Q Consensus 254 ~~~vr~~~~~~l~~l~~~~~--~~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---~-~~~~l~~~l~ 325 (530)
+..++..++.+|.+++..-. +... ....+|.+++++.+++++++..|+.+|..++..-+.+ . .....+|.+.
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv 176 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALM 176 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHH
Confidence 35677777777777763211 0011 2346899999999999999999999999997642221 1 2234577777
Q ss_pred Hh-ccCCcHHHHHHHHHHHHhhccccC--HHHH--HHhHHHHHHHhhcCCCh----HHHHHHHHhhHHhhhhh--chh--
Q 009632 326 EL-SSDSSQHVRSALASVIMGMAPLLG--KDAT--IEQLLPIFLSLLKDEFP----DVRLNIISKLDQVNQVI--GID-- 392 (530)
Q Consensus 326 ~~-~~d~~~~vr~~~~~~l~~l~~~~~--~~~~--~~~l~~~l~~~l~d~~~----~vr~~a~~~l~~l~~~~--~~~-- 392 (530)
++ ..+.+..++..++.++..++.... ...+ ....+|.+..+|.+.+. .++..++.+|.++...+ +++
T Consensus 177 ~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~ 256 (354)
T 3nmw_A 177 ECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHR 256 (354)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHH
Confidence 75 566788899988888888876332 1222 24678999999987654 58999999998887531 111
Q ss_pred -HH-HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhC--h-hhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh
Q 009632 393 -LL-SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--V-GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF 467 (530)
Q Consensus 393 -~~-~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~--~-~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~ 467 (530)
.+ ....+|.|..++.+.+..++..|+.++..++..-. . .......+|.+..++.+++..+|+.|+.+|..+...-
T Consensus 257 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~ 336 (354)
T 3nmw_A 257 QILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 336 (354)
T ss_dssp HHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 11 23578999999999999999999999999974211 1 1122347899999999999999999999999998764
Q ss_pred C
Q 009632 468 G 468 (530)
Q Consensus 468 ~ 468 (530)
+
T Consensus 337 ~ 337 (354)
T 3nmw_A 337 P 337 (354)
T ss_dssp C
T ss_pred H
Confidence 4
No 88
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=99.09 E-value=3.4e-08 Score=82.32 Aligned_cols=214 Identities=13% Similarity=0.108 Sum_probs=166.6
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc---hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc-hh
Q 009632 162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP-QD 237 (530)
Q Consensus 162 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-~~ 237 (530)
++.+..+.++++|.++.++..++.++..+.+.+++ ....+.++|.+.+++.++++.|-..|++++..+....+. +.
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 34677888999999999999999999999998765 345678999999999999999999999999999988654 23
Q ss_pred hhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHH
Q 009632 238 CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAI 317 (530)
Q Consensus 238 ~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~ 317 (530)
.+..+...+.....+++.-.+..++..++.+ ........+..++.+++...++.++.+++.++..++..-+.....
T Consensus 112 ~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl----kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~ 187 (265)
T 3b2a_A 112 TFLKAAKTLVSLLESPDDMMRIETIDVLSKL----QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHL 187 (265)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC----CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCG
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHhCcC----CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHH
Confidence 3456888888899999999999999999888 222224578899999999999999999999999999877666556
Q ss_pred hhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHH---HHhHHHHHHHhh-cCCChHHHHHHH
Q 009632 318 QHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDAT---IEQLLPIFLSLL-KDEFPDVRLNII 379 (530)
Q Consensus 318 ~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~---~~~l~~~l~~~l-~d~~~~vr~~a~ 379 (530)
+.++.-+..++++.++.++.-++..+-.+...--.+.. ...++...-++. ..+.+.+|..|-
T Consensus 188 ~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka~ 253 (265)
T 3b2a_A 188 TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLVYREGAPIIRLKAK 253 (265)
T ss_dssp GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHGGGCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHHHHHHhcCChhHHHHHH
Confidence 77888888889999999999999888877653211111 223344444444 455666666653
No 89
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.08 E-value=1.2e-07 Score=103.82 Aligned_cols=454 Identities=10% Similarity=-0.037 Sum_probs=258.8
Q ss_pred CchHHHHHHHHHHhcccccCCCccchhcchhHHHhhhcccchHHHHHHHHHHHHHHhh----cChh---hhhhhHHHHHH
Q 009632 59 DDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQ----MRES---DLVDWYIPLVK 131 (530)
Q Consensus 59 ~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~----~~~~---~~~~~l~~~l~ 131 (530)
.++++|+.|-..|..+-+. ++.+..+.-.|. ..+.+..+|..|+..|.+.++. ++++ .++..++..+.
T Consensus 25 ~~~~~r~~Ae~~L~~~~~~---p~~~~~~~~~L~--~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll~~l~ 99 (1204)
T 3a6p_A 25 STQRYRLEALKFCEEFKEK---CPICVPCGLRLA--EKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELIA 99 (1204)
T ss_dssp CCHHHHHHHHHHHHHHHHH---CTTHHHHHHHHT--STTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhC---chHHHHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 3667899898888877442 222222222221 2456889999999999998753 3332 23444555544
Q ss_pred HHhc---CCccchhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc-----h------
Q 009632 132 RLAA---GEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP-----A------ 197 (530)
Q Consensus 132 ~l~~---~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~-----~------ 197 (530)
.... ++...+|...+.+++.++..--++.++++++.+..+++. ++..+..++..|..+.+-... .
T Consensus 100 ~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l 178 (1204)
T 3a6p_A 100 NGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDI 178 (1204)
T ss_dssp HSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHH
T ss_pred hhccccccccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHH
Confidence 3221 134678888888888877664445677788888777754 566788888888888754211 0
Q ss_pred -----hhHHHHHHHHHHhhcC-------------------CchhHHHHHHHHHHHHhhhcCchhhh---hccHHHHHHhc
Q 009632 198 -----HLKTDIMSIFEDLTQD-------------------DQDSVRLLAVEGCAALGKLLEPQDCV---AHILPVIVNFS 250 (530)
Q Consensus 198 -----~~~~~l~~~l~~~~~d-------------------~~~~vr~~a~~~l~~l~~~~~~~~~~---~~~~~~l~~~~ 250 (530)
...+.+++.+.+.+.+ ++..++..+++++..+..-.+..... ..+++.+..++
T Consensus 179 ~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l 258 (1204)
T 3a6p_A 179 QQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLL 258 (1204)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHc
Confidence 0122455555555543 23346777777777665544433222 23778777777
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCCcc----cccch----HHHHHHhc--------CCCcHHHHHHHHHHHHHHHHhhC--
Q 009632 251 QDKSWRVRYMVANQLYELCEAVGPEP----TRMDL----VPAYVRLL--------RDNEAEVRIAAAGKVTKFCRILN-- 312 (530)
Q Consensus 251 ~d~~~~vr~~~~~~l~~l~~~~~~~~----~~~~l----~~~l~~~l--------~d~~~~vr~~a~~~l~~~~~~~~-- 312 (530)
.+ +.+|..++++|..++..-.+.. ....+ +..+++.. .+.+.++++...+.+..++....
T Consensus 259 ~~--~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l 336 (1204)
T 3a6p_A 259 NE--QELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCAL 336 (1204)
T ss_dssp GC--TTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC--HHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65 4589999999999986432111 01111 11222222 22335566666655555542211
Q ss_pred --------HHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhcccc--CH----HHHHHhHHHHHHH---hhc---CCC-
Q 009632 313 --------PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL--GK----DATIEQLLPIFLS---LLK---DEF- 371 (530)
Q Consensus 313 --------~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~--~~----~~~~~~l~~~l~~---~l~---d~~- 371 (530)
.......+++.+..+..+++..+-..++..+..+.+.. +. ..+...+++.+.. -++ +.+
T Consensus 337 ~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~ 416 (1204)
T 3a6p_A 337 LGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDS 416 (1204)
T ss_dssp HHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSS
T ss_pred HhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCC
Confidence 11123567888888888888888888888877665442 11 2234555555522 111 000
Q ss_pred --------------------hHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhc------------------------
Q 009632 372 --------------------PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE------------------------ 407 (530)
Q Consensus 372 --------------------~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~------------------------ 407 (530)
.+.|......+..++...+... ...+.+.+...+.
T Consensus 417 ~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~~-l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 495 (1204)
T 3a6p_A 417 PSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKTS-FQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSV 495 (1204)
T ss_dssp THHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHHTCC-----------------CCSCS
T ss_pred cchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHHHH-HHHHHHHHHHHHhhhhcccccccccccccccccccCc
Confidence 1356666777776665543322 2334444433322
Q ss_pred -CCChHHHHHHHHHHHHHHhhh---C-hhhHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHHHHhChh-HHhhhhHH
Q 009632 408 -DRHWRVRLAIIEYIPLLASQL---G-VGFFDDKLGALCMQWL---QDKVYSIRDAAANNLKRLAEEFGPE-WAMQHITP 478 (530)
Q Consensus 408 -~~~~~~R~~~~~~l~~l~~~~---~-~~~~~~~~~~~l~~~l---~d~~~~Vr~~a~~~l~~l~~~~~~~-~~~~~i~~ 478 (530)
++.|..+.+....+..++..+ . .+.....+.|.++..+ ...++.+|..++.+++.+...+... .....++.
T Consensus 496 ~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~ 575 (1204)
T 3a6p_A 496 FSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFS 575 (1204)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHH
Confidence 234666677666676666554 1 1111112344444432 3457789999999999888776422 12234455
Q ss_pred HHHhhccC------------CChHHHHHHHHHHHHHhhhcChH--HHHhhHHHHHHh
Q 009632 479 QVLEMINN------------PHYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVIN 521 (530)
Q Consensus 479 ~l~~~~~d------------~~~~vr~~a~~~l~~i~~~~~~~--~~~~~~~p~l~~ 521 (530)
.+...+.+ .+.++|..|+.++..++..++.. .+.+.+...+..
T Consensus 576 ~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~ 632 (1204)
T 3a6p_A 576 KLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQ 632 (1204)
T ss_dssp HHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHH
T ss_pred HHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 45544444 34589999999999999887543 234444444444
No 90
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=99.07 E-value=7.2e-08 Score=84.56 Aligned_cols=180 Identities=10% Similarity=0.083 Sum_probs=130.9
Q ss_pred HhHhccCCcHHHHHHHHHHHHhhccccCHHHH---HHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh------HH
Q 009632 324 VKELSSDSSQHVRSALASVIMGMAPLLGKDAT---IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID------LL 394 (530)
Q Consensus 324 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~------~~ 394 (530)
+...+-+++|+.|..+++.+....+... +.. .+.+++.+.-.+.|.+..|-..+++.+..+...++.. ..
T Consensus 51 ~~~~lfs~d~k~~~~ale~L~~~l~~~~-~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~e 129 (266)
T 2of3_A 51 LMSQLFHKDFKQHLAALDSLVRLADTSP-RSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEE 129 (266)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHHHCH-HHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhhCh-HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence 3444456788888877777776544322 222 1223333333445888888888888888887666542 11
Q ss_pred HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhh
Q 009632 395 SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQ 474 (530)
Q Consensus 395 ~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~ 474 (530)
...++|.+.+-+.|+...+|..+-..+..+....++ ..+++.+...+.++++.+|...+..++.+...+|.. ..
T Consensus 130 a~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~----~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~--~~ 203 (266)
T 2of3_A 130 VSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP----LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS--PL 203 (266)
T ss_dssp HHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH----HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG--GG
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC--cc
Confidence 256889988888898888998888888777765543 346777888888889999999999999999888876 34
Q ss_pred hhH---HHHHhhccCCChHHHHHHHHHHHHHhhhcChHH
Q 009632 475 HIT---PQVLEMINNPHYLYRMTILRAISLLAPVMGSEI 510 (530)
Q Consensus 475 ~i~---~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~~~~ 510 (530)
..+ |.+.++++|+|..||.+|+.++..+....|...
T Consensus 204 ~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v 242 (266)
T 2of3_A 204 KSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQM 242 (266)
T ss_dssp GGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHH
T ss_pred ccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHH
Confidence 567 888889999999999999999998888887653
No 91
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=99.06 E-value=1.5e-09 Score=98.72 Aligned_cols=179 Identities=15% Similarity=0.094 Sum_probs=83.6
Q ss_pred HhccCCcHHHHHHHHHHHHhhccccCHHHH-------HHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh------
Q 009632 326 ELSSDSSQHVRSALASVIMGMAPLLGKDAT-------IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID------ 392 (530)
Q Consensus 326 ~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~-------~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~------ 392 (530)
+-+.+++|..|..+++.+..+......... ...+.+.+...+.|.+..|...++.++..++...+..
T Consensus 16 e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~ 95 (278)
T 4ffb_C 16 ERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAH 95 (278)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHH
T ss_pred HhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccch
Confidence 334555555555555555443322211100 1122344445555555556555555555555443321
Q ss_pred --HHHhhHHHHHHHH-hcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCh
Q 009632 393 --LLSQSLLPAIVEL-AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP 469 (530)
Q Consensus 393 --~~~~~l~~~l~~~-~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~ 469 (530)
.....++|.+.+- +.+....+|..++.++..++...+.. ..+++.+...+..+++.||..++..|..+...+|.
T Consensus 96 ~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~---~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~ 172 (278)
T 4ffb_C 96 NITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI---TQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGL 172 (278)
T ss_dssp HHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS---HHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCC
Confidence 1123444544433 45555555655555555554433221 12334444555556666666666666665555543
Q ss_pred hHH-----hhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcC
Q 009632 470 EWA-----MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG 507 (530)
Q Consensus 470 ~~~-----~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~ 507 (530)
... ...+++.+..+++|+|..||..|..+++.+...+|
T Consensus 173 ~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G 215 (278)
T 4ffb_C 173 TNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTG 215 (278)
T ss_dssp TTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC--
T ss_pred CcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 311 12234444445556666666666666666555555
No 92
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.04 E-value=1.5e-07 Score=74.93 Aligned_cols=216 Identities=16% Similarity=0.094 Sum_probs=154.1
Q ss_pred hcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChHHHHHH
Q 009632 85 HVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTEL 164 (530)
Q Consensus 85 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l 164 (530)
..++.-+-.++.|+-|.||..|+..+..+++..+. .....+-.++.-+.+++.-..-......+|.++. ..++....+
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~e-l~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~-i~Pe~v~~v 108 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTRED-LYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAK-EKPELVKSM 108 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH-HCHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHH-HHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHH-hCHHHHHhh
Confidence 34455566677788899999999999999987654 2233333333333455543333445556665553 345667778
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHH
Q 009632 165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244 (530)
Q Consensus 165 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 244 (530)
+|.+..-..-.++.+|-....+|+.++...| .....++.-+..++++++..-|..|+..++.++..-. .+...++|
T Consensus 109 Vp~lfanyrigd~kikIn~~yaLeeIaranP--~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~--~yv~PfLp 184 (253)
T 2db0_A 109 IPVLFANYRIGDEKTKINVSYALEEIAKANP--MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSF--KYVNPFLP 184 (253)
T ss_dssp HHHHHHHSCCCSHHHHHHHHHHHHHHHHHCH--HHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTH--HHHGGGHH
T ss_pred HHHHHHHHhcCCccceecHHHHHHHHHHhCh--HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCc--cccCcchH
Confidence 8888887776789999999999999987543 3345666777788899998889999888887765422 35666888
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 009632 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCR 309 (530)
Q Consensus 245 ~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~ 309 (530)
-+..++.|.+.-||.++.++++.++..-. ...+++.--++-++|++..|......+++.+.-
T Consensus 185 rL~aLL~D~deiVRaSaVEtL~~lA~~np---klRkii~~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 185 RIINLLHDGDEIVRASAVEALVHLATLND---KLRKVVIKRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp HHHGGGGCSSHHHHHHHHHHHHHHHTSCH---HHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcchhhhHHHHHHHHHHHHcCH---HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999985411 123444455666789998898888888887753
No 93
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=99.04 E-value=9.5e-09 Score=93.47 Aligned_cols=181 Identities=11% Similarity=0.050 Sum_probs=121.3
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHhhCHH----H---HHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHH------
Q 009632 287 RLLRDNEAEVRIAAAGKVTKFCRILNPE----L---AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD------ 353 (530)
Q Consensus 287 ~~l~d~~~~vr~~a~~~l~~~~~~~~~~----~---~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~------ 353 (530)
+-+.+.+|..|..|+..+..+....... . ....+.+.+...+.|.|..+...+++++..++..++..
T Consensus 16 e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~ 95 (278)
T 4ffb_C 16 ERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAH 95 (278)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHH
T ss_pred HhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccch
Confidence 4444455555555555444444322111 0 01234555666677777777777777777776655421
Q ss_pred --HHHHhHHHHHH-HhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCh
Q 009632 354 --ATIEQLLPIFL-SLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV 430 (530)
Q Consensus 354 --~~~~~l~~~l~-~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~ 430 (530)
.+...++|.+. .++.|....+|..+..++-.++...+.. ..++..+...++++++.+|..++.++..+...+|.
T Consensus 96 ~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~---~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~ 172 (278)
T 4ffb_C 96 NITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI---TQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGL 172 (278)
T ss_dssp HHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS---HHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCC
Confidence 22345566665 4688999999999999888777654322 34566667778999999999999999999988875
Q ss_pred hh-----HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh
Q 009632 431 GF-----FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE 470 (530)
Q Consensus 431 ~~-----~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~ 470 (530)
.. ....+++.+..++.|++++||.+|..+++.+...+|+.
T Consensus 173 ~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~ 217 (278)
T 4ffb_C 173 TNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNN 217 (278)
T ss_dssp TTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred CcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence 43 33457778888999999999999999999999998854
No 94
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.03 E-value=2.3e-07 Score=73.95 Aligned_cols=214 Identities=15% Similarity=0.146 Sum_probs=139.9
Q ss_pred HHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHhCCccccc
Q 009632 201 TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVN-FSQDKSWRVRYMVANQLYELCEAVGPEPTRM 279 (530)
Q Consensus 201 ~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~-~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~ 279 (530)
..++..+..++.|+-+.|++.|+..+..+++..+.- ...++..+.. +-++.....-...+..+|.++..-+ + ...
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el--~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P-e-~v~ 106 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDL--YEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP-E-LVK 106 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGG--HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH-H-HHH
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHH--HHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCH-H-HHH
Confidence 345555666666666666666666666666554321 1111111222 2345555566777888888876522 1 134
Q ss_pred chHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhH
Q 009632 280 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQL 359 (530)
Q Consensus 280 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l 359 (530)
.++|.+..-..-.++.+|.+..++|+.++...+. ....++.-+..++++++..-|..++..++.++..- -.+...+
T Consensus 107 ~vVp~lfanyrigd~kikIn~~yaLeeIaranP~--l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~--~~yv~Pf 182 (253)
T 2db0_A 107 SMIPVLFANYRIGDEKTKINVSYALEEIAKANPM--LMASIVRDFMSMLSSKNREDKLTALNFIEAMGENS--FKYVNPF 182 (253)
T ss_dssp HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHH--HHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT--HHHHGGG
T ss_pred hhHHHHHHHHhcCCccceecHHHHHHHHHHhChH--HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccC--ccccCcc
Confidence 6788888877777889999999999999875322 23556666677788888888888888888876532 3456677
Q ss_pred HHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 009632 360 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 425 (530)
Q Consensus 360 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~ 425 (530)
+|-+..+|.|.+.-||..++++|..+...-. .+.+ ++..-.+-+.|.+..+.....+.++.+.
T Consensus 183 LprL~aLL~D~deiVRaSaVEtL~~lA~~np--klRk-ii~~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 183 LPRIINLLHDGDEIVRASAVEALVHLATLND--KLRK-VVIKRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp HHHHHGGGGCSSHHHHHHHHHHHHHHHTSCH--HHHH-HHHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCcchhhhHHHHHHHHHHHHcCH--HHHH-HHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 8888889999999999999999888876422 2322 3333334457777777777777777664
No 95
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.01 E-value=4.4e-08 Score=88.93 Aligned_cols=171 Identities=9% Similarity=0.054 Sum_probs=132.4
Q ss_pred HHHHHHHHHHHHHHHhhCHH--HHHhhhhHhHhH-hccCCcHHHHHHHHHHHHhhccccCH---HHHHHhHHHHHHHhhc
Q 009632 295 EVRIAAAGKVTKFCRILNPE--LAIQHILPCVKE-LSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLK 368 (530)
Q Consensus 295 ~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~-~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~ 368 (530)
+-|..|+..|..++...+.. ......+|.+.. ++++++..+|..++.+++.++..-.. .......+|.+..+|+
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~ 134 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLD 134 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHc
Confidence 56778888888888755432 222345677777 88999999999999999998754221 1223357889999998
Q ss_pred -CCChHHHHHHHHhhHHhhhhhch--hHH-HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhh----HHHHHHHH
Q 009632 369 -DEFPDVRLNIISKLDQVNQVIGI--DLL-SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF----FDDKLGAL 440 (530)
Q Consensus 369 -d~~~~vr~~a~~~l~~l~~~~~~--~~~-~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~----~~~~~~~~ 440 (530)
+++..+|..|+.+++.++....+ +.+ ....+|.|..++++++..+|..++.+++.++.. +.+. ....++|.
T Consensus 135 ~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i~~ 213 (296)
T 1xqr_A 135 RDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMVQQ 213 (296)
T ss_dssp HCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCHHH
Confidence 45889999999999999865432 222 246889999999999999999999999999876 3222 33458899
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHH
Q 009632 441 CMQWLQDKVYSIRDAAANNLKRLAEE 466 (530)
Q Consensus 441 l~~~l~d~~~~Vr~~a~~~l~~l~~~ 466 (530)
+..++.+++..||..++.+++.++..
T Consensus 214 Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 214 LVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 99999999999999999999999876
No 96
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=99.00 E-value=4e-08 Score=90.61 Aligned_cols=285 Identities=9% Similarity=0.046 Sum_probs=162.5
Q ss_pred HHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCccccc
Q 009632 200 KTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM 279 (530)
Q Consensus 200 ~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~ 279 (530)
...+++-..+++..++...|....-.+..+++. +++ .. .+...+.+-++|+++.+|..+..+++.+.. ....+
T Consensus 66 ~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e-~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~----~~m~~ 138 (355)
T 3tjz_B 66 ATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AED-VI-IVTSSLTKDMTGKEDSYRGPAVRALCQITD----STMLQ 138 (355)
T ss_dssp HHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSC-GG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC----TTTHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHH-HH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC----HHHHH
Confidence 456778888999999999999999888888876 322 22 577788888899999999999999988852 22356
Q ss_pred chHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhH
Q 009632 280 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQL 359 (530)
Q Consensus 280 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l 359 (530)
.+.+.+.+.+.|.+|.||++|+-+...+... .++ ..+.+++.+.+++.|+++.|...++..+..+... + .....++
T Consensus 139 ~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~-~pe-~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~-d-~~a~~kL 214 (355)
T 3tjz_B 139 AIERYMKQAIVDKVPSVSSSALVSSLHLLKC-SFD-VVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKN-D-RLAVSKM 214 (355)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTT-CHH-HHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTT-C-HHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHhcc-CHH-HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhh-c-hHHHHHH
Confidence 7889999999999999999999998877654 333 3367888888899999999998888888777643 2 1122333
Q ss_pred HHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHH
Q 009632 360 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGA 439 (530)
Q Consensus 360 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~ 439 (530)
++.+... .-.++......+..+..++..- .....+.+++.+...+++.+..|-..|+.++..+.. .+... ......
T Consensus 215 v~~l~~~-~l~~~~~q~~llr~l~~~~~~d-~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~-~~~~~-~~~a~~ 290 (355)
T 3tjz_B 215 ISKFTRH-GLKSPFAYCMMIRVASRQLEDE-DGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG-CSAKE-LAPAVS 290 (355)
T ss_dssp HHHHHSS-CCSCHHHHHHHHHHHTCC------------------CCCCCSSHHHHHHHHHHHTC-------------CCC
T ss_pred HHHHhcC-CCcChHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC-CCHHH-HHHHHH
Confidence 3333221 0113444444445444443321 012345778888888899999999999999987754 22221 123455
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhccCCChHHHHHHHHHHHH
Q 009632 440 LCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISL 501 (530)
Q Consensus 440 ~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~ 501 (530)
.+..++..+++++|..|++.+..+......- ....-..+.++++|+|..++..|+.++-+
T Consensus 291 ~L~~fLss~d~niryvaLr~L~~l~~~~P~~--v~~~n~~ie~li~d~n~sI~t~Aittllk 350 (355)
T 3tjz_B 291 VLQLFCSSPKAALRYAAVRTLNKVAMKHPSA--VTACNLDLENLVTDANRSIATLAITTLLK 350 (355)
T ss_dssp THHHHHHSSSSSSHHHHHHCC-----------------------------------------
T ss_pred HHHHHHcCCCchHHHHHHHHHHHHHHHCcHH--HHHHHHHHHHHccCCcHhHHHHHHHHhhh
Confidence 6677788888999999999999988765422 23455667788999998888877776543
No 97
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.98 E-value=3.5e-08 Score=89.58 Aligned_cols=172 Identities=14% Similarity=0.148 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHhhccccCH--HHHHHhHHHHHHH-hhcCCChHHHHHHHHhhHHhhhhhch---hHHHhhHHHHHHHHhc
Q 009632 334 HVRSALASVIMGMAPLLGK--DATIEQLLPIFLS-LLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAE 407 (530)
Q Consensus 334 ~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~ 407 (530)
.-|..++..+..++..... .......+|.+.. +|+++++.+|..|+.+++.++..-.. ..+....+|.|..+++
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~ 134 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLD 134 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHc
Confidence 3556666666666654322 1222345788888 99999999999999999999864221 1223467888888887
Q ss_pred C-CChHHHHHHHHHHHHHHhhhCh--hhH-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCh---hHHhhhhHHHH
Q 009632 408 D-RHWRVRLAIIEYIPLLASQLGV--GFF-DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQV 480 (530)
Q Consensus 408 ~-~~~~~R~~~~~~l~~l~~~~~~--~~~-~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~---~~~~~~i~~~l 480 (530)
+ ++..+|..|+.+++.++..... +.| ....+|.+..++.+++..|+..|+.+++.++..... ......++|.|
T Consensus 135 ~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~L 214 (296)
T 1xqr_A 135 RDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQL 214 (296)
T ss_dssp HCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHH
Confidence 4 5789999999999999864332 223 345899999999999999999999999999876221 12346789999
Q ss_pred HhhccCCChHHHHHHHHHHHHHhhh
Q 009632 481 LEMINNPHYLYRMTILRAISLLAPV 505 (530)
Q Consensus 481 ~~~~~d~~~~vr~~a~~~l~~i~~~ 505 (530)
..++.+++..+|..++.++++++..
T Consensus 215 v~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 215 VALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHcCCChhHHHHHHHHHHHHHhC
Confidence 9999999999999999999999876
No 98
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=98.95 E-value=2.3e-08 Score=84.45 Aligned_cols=139 Identities=17% Similarity=0.176 Sum_probs=113.3
Q ss_pred hhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChHHHHHHHHHHHh-hcCCCChhHHHHHHHHHHHHHhhhcchhhHH
Q 009632 123 VDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQ-LCQDDMPMVRRSAASNLGKFAATVEPAHLKT 201 (530)
Q Consensus 123 ~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~-l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~ 201 (530)
.+.+.++...+.+++.+.+|..|+.+++.+ . ....+++.+.. +..|++|.||+.++.+++.++...+++.
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~-----~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~--- 139 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S-----KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK--- 139 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T-----TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT---
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c-----CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH---
Confidence 345788899999999999999999999887 3 22668888887 8889999999999999999997555542
Q ss_pred HHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 009632 202 DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA 271 (530)
Q Consensus 202 ~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~ 271 (530)
.++.+...+.|++..||..|++.+...+.........+.++|.+..+..|+++.||.+++..|..+++.
T Consensus 140 -~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~ 208 (240)
T 3l9t_A 140 -ALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKK 208 (240)
T ss_dssp -THHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhh
Confidence 567888999999999999999987654443222333556899999999999999999999999998754
No 99
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.95 E-value=3.2e-07 Score=76.55 Aligned_cols=181 Identities=12% Similarity=0.038 Sum_probs=146.8
Q ss_pred chhHHHhhhcccchHHHHHHHHHHHHHHhhcChhh---hhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCC--hHHH
Q 009632 87 LLPPLETLCTVEETCVRDKAVESLCRIGSQMRESD---LVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAP--DILK 161 (530)
Q Consensus 87 l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~--~~~~ 161 (530)
.+..+..++.|+|+.++..++.++..+.+..++.. ..+.+++.+..+..+++.++-..|.+++..+....+ ++..
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y 113 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTF 113 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHH
Confidence 55667778899999999999999999999876532 234467777778888888888889999998887754 4567
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhc
Q 009632 162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAH 241 (530)
Q Consensus 162 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 241 (530)
..+...+..+..+++.-.+..++..++.+ ..-...+.+...+.+++...+..++.+|+.++..++..-++......
T Consensus 114 ~Kl~~aL~dlik~~~~il~~eaae~Lgkl----kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~~ 189 (265)
T 3b2a_A 114 LKAAKTLVSLLESPDDMMRIETIDVLSKL----QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTL 189 (265)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHHHHHHC----CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGG
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHhCcC----CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHHH
Confidence 77888888888888999999999998887 33333567888888888888899999999999999988777677777
Q ss_pred cHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 009632 242 ILPVIVNFSQDKSWRVRYMVANQLYELCEA 271 (530)
Q Consensus 242 ~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~ 271 (530)
++.-+..++++.++.++.-+...+..+...
T Consensus 190 I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 190 ILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp TTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 888888888888999999888887777643
No 100
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.89 E-value=3.7e-10 Score=89.81 Aligned_cols=122 Identities=16% Similarity=0.199 Sum_probs=88.1
Q ss_pred HHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHH
Q 009632 355 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD 434 (530)
Q Consensus 355 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~ 434 (530)
+.....+.+..+|+|+++.+|..++..|+.+.. . . ++.+.+.++|+++.+|..++.+++.+..
T Consensus 9 ~~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~----~----~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~-------- 71 (131)
T 1te4_A 9 HHSSGLVPRGSHMADENKWVRRDVSTALSRMGD----E----A-FEPLLESLSNEDWRIRGAAAWIIGNFQD-------- 71 (131)
T ss_dssp ------------CCSSCCCSSSSCCSSTTSCSS----T----T-HHHHHHGGGCSCHHHHHHHHHHHGGGCS--------
T ss_pred cccccHHHHHHHhcCCCHHHHHHHHHHHHHhCc----h----H-HHHHHHHHcCCCHHHHHHHHHHHHhcCC--------
Confidence 344556778888999999999999888876532 1 2 4778888899999999999998887642
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhccCCChHHHHHHHHHHHH
Q 009632 435 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISL 501 (530)
Q Consensus 435 ~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~ 501 (530)
...+|.+...+.|+++.||..|+.+|+.+. ....++.|...++|++..||..+..+++.
T Consensus 72 ~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~--------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 ERAVEPLIKLLEDDSGFVRSGAARSLEQIG--------GERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC--------SHHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--------cHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 235777888888999999999999998763 13467888888889999999999988865
No 101
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=98.77 E-value=8.6e-08 Score=80.97 Aligned_cols=139 Identities=20% Similarity=0.232 Sum_probs=106.9
Q ss_pred HHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHhCCcccc
Q 009632 200 KTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVN-FSQDKSWRVRYMVANQLYELCEAVGPEPTR 278 (530)
Q Consensus 200 ~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~-~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~ 278 (530)
.+++++.+..+.+|+.++||..|+..++.. . ....+++.+.. +..|++|+||..++..++.++...+.+
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe--- 138 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK--- 138 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT---
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH---
Confidence 467889999999999999999999988776 2 12458888887 888999999999999999998755543
Q ss_pred cchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccc
Q 009632 279 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL 349 (530)
Q Consensus 279 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~ 349 (530)
..++.+..-+.|+++.||..|+..+...+.........+.++|.+..+..|+++.||.++...+..+++.
T Consensus 139 -~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~ 208 (240)
T 3l9t_A 139 -KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKK 208 (240)
T ss_dssp -TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhh
Confidence 3678888889999999999998876543332111122245677888888888888888888888777654
No 102
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.76 E-value=1.9e-09 Score=85.61 Aligned_cols=120 Identities=16% Similarity=0.132 Sum_probs=80.4
Q ss_pred hhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhh
Q 009632 318 QHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQS 397 (530)
Q Consensus 318 ~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 397 (530)
+...+.+...++|+++.+|..++..++.+... . .+.+..+++|+++.||..++.+++.+.. +.
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~--------~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------~~ 73 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE--------A-FEPLLESLSNEDWRIRGAAAWIIGNFQD--------ER 73 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSST--------T-HHHHHHGGGCSCHHHHHHHHHHHGGGCS--------HH
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch--------H-HHHHHHHHcCCCHHHHHHHHHHHHhcCC--------HH
Confidence 34456666667777888887777666555321 1 3667788888888888888888877642 24
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 009632 398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKR 462 (530)
Q Consensus 398 l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~ 462 (530)
.++.+...+.|+++.+|..++.+++.+.. ...+|.+...++|+++.||..|+.+|+.
T Consensus 74 a~~~L~~~L~d~~~~VR~~A~~aL~~~~~--------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 74 AVEPLIKLLEDDSGFVRSGAARSLEQIGG--------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHHHHCCTHHHHHHHHHHHHHCS--------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 56677777778888888888888887641 2356777888888888888888888764
No 103
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=98.63 E-value=1.5e-06 Score=91.74 Aligned_cols=370 Identities=11% Similarity=0.023 Sum_probs=200.2
Q ss_pred CCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc------hhhHHHHHHHHHHhhcC-CchhHHHHHHHHH
Q 009632 154 PSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP------AHLKTDIMSIFEDLTQD-DQDSVRLLAVEGC 226 (530)
Q Consensus 154 ~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~------~~~~~~l~~~l~~~~~d-~~~~vr~~a~~~l 226 (530)
...++...+.+.+.+..++.|++..-.+++++.++.+...... +...+.+.|.+.+.+.+ -.++....=..++
T Consensus 499 rn~~~~~l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i 578 (997)
T 1vsy_5 499 SGFCELNMSDLFELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLA 578 (997)
T ss_dssp TTTCCCCGGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHH
Confidence 4556667788999999999999988999999999998764332 34567788999988884 4444333222222
Q ss_pred HHHhhhcCchhhhhccHHHHHH----hc-CCCCHHHHHHHHHHHHHHHHHhCCcc-cccchHHHHHHhcCCCcHHHHHHH
Q 009632 227 AALGKLLEPQDCVAHILPVIVN----FS-QDKSWRVRYMVANQLYELCEAVGPEP-TRMDLVPAYVRLLRDNEAEVRIAA 300 (530)
Q Consensus 227 ~~l~~~~~~~~~~~~~~~~l~~----~~-~d~~~~vr~~~~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~d~~~~vr~~a 300 (530)
..+....++.. ..-++..+.. +. ++.+.-....-...+..+....+-.. ....++..+. +.++...||++.
T Consensus 579 ~~~~~~~DprR-~~~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~~~~~l~~~~--l~h~y~~VRe~I 655 (997)
T 1vsy_5 579 WWLPAVVDLRR-SKTFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPDVGKLFDELV--FDHPYDQVRQAV 655 (997)
T ss_dssp HHHHHHSCGGG-CHHHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCCCHHHHHHCC--SCCSCHHHHHHH
T ss_pred HHHhcCCChhh-hHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH--hCCChHHHHHHH
Confidence 33333333322 1223333311 00 11111011111122333332222211 1233444444 566777888888
Q ss_pred HHHHHHHHHhhC----------------------------HHHHHhhhh---HhHhHhcc---C--C-----cH--HHHH
Q 009632 301 AGKVTKFCRILN----------------------------PELAIQHIL---PCVKELSS---D--S-----SQ--HVRS 337 (530)
Q Consensus 301 ~~~l~~~~~~~~----------------------------~~~~~~~l~---~~l~~~~~---d--~-----~~--~vr~ 337 (530)
...|..+....- +..+.+.+. ..+..... + + +. +.-.
T Consensus 656 g~~L~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~s~y~~~~k 735 (997)
T 1vsy_5 656 AKLLTTLVQNQSNPSISDPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQFIKTDYFYRTS 735 (997)
T ss_dssp HHHHHHHHHTSCCCCBSCHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCCSTTTTTSHHHHHHH
T ss_pred HHHHHHHHHhhcccCCCCHHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhcccccCccccchHHHHHHHH
Confidence 777776655430 011111111 11111111 1 0 11 1223
Q ss_pred HHHHHHHhhccccCHHH---HHH-hHHHHHHHhhcCCCh-HHHHH-HHHhhHHhhhhhchhHHHhhHHHHHHHHhc-CCC
Q 009632 338 ALASVIMGMAPLLGKDA---TIE-QLLPIFLSLLKDEFP-DVRLN-IISKLDQVNQVIGIDLLSQSLLPAIVELAE-DRH 410 (530)
Q Consensus 338 ~~~~~l~~l~~~~~~~~---~~~-~l~~~l~~~l~d~~~-~vr~~-a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~-~~~ 410 (530)
.++.++........... +.. .++|.++.+.++++. ++... +...+..+....-+....+.++..+.+..+ +++
T Consensus 736 Tvl~wl~~~l~~~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~s 815 (997)
T 1vsy_5 736 TIFYWIKEMARGPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSS 815 (997)
T ss_dssp HHHHHHHHHSSGGGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCS
T ss_pred HHHHHHHHHhcCCCccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCc
Confidence 44444433322211111 112 255555555554433 33333 334444443332233334556666666665 579
Q ss_pred hHHHHHHHHHHHHHHhh----hChhhHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhcc
Q 009632 411 WRVRLAIIEYIPLLASQ----LGVGFFDDKLGALCMQWLQDKV-YSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN 485 (530)
Q Consensus 411 ~~~R~~~~~~l~~l~~~----~~~~~~~~~~~~~l~~~l~d~~-~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~ 485 (530)
| .|..++..+..+.-. ++.+. ...+...+..+|.|+. .+||+.|+.+|+-+....+.......++..+.+.+.
T Consensus 816 W-~R~~~L~~lq~~~f~n~f~l~~~~-~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~ 893 (997)
T 1vsy_5 816 N-QTKLQLAFIQHFLSAELLQLTEEE-KNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLD 893 (997)
T ss_dssp S-SHHHHHHHHHHHHHHHTTTSCTTH-HHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSST
T ss_pred H-HHHHHHHHHHHHHHHHHHHcCHHH-HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 9 999999988766441 22322 3568889999999999 999999999999998765232222345555554442
Q ss_pred C------------CChHHHHHHHHHHHHHhhhcChH----HHHhhHHHHHHhhccCCCC
Q 009632 486 N------------PHYLYRMTILRAISLLAPVMGSE----ITCSRLLPVVINASKDRYL 528 (530)
Q Consensus 486 d------------~~~~vr~~a~~~l~~i~~~~~~~----~~~~~~~p~l~~~l~D~~~ 528 (530)
. .+...|.+++-+++.++.+.+-. ...+.++..|-..+.|+-|
T Consensus 894 ~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~ 952 (997)
T 1vsy_5 894 VNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM 952 (997)
T ss_dssp TTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS
T ss_pred hcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc
Confidence 2 12257899999999999987733 4566777777778887543
No 104
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=98.54 E-value=9.5e-07 Score=93.18 Aligned_cols=384 Identities=11% Similarity=0.009 Sum_probs=209.6
Q ss_pred hhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcCh------hhhhhhHHHHHHHHhcC-CccchhHHHHhHhhhhcCCC
Q 009632 84 AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE------SDLVDWYIPLVKRLAAG-EWFTARVSACGLFHIAYPSA 156 (530)
Q Consensus 84 ~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~------~~~~~~l~~~l~~l~~~-~~~~~r~~~~~~l~~l~~~~ 156 (530)
.+.+.+.+..+..+++..-...|++.+..++..... +..+..+.|++.....+ -.+.....=..++..+....
T Consensus 506 l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~~~~ 585 (997)
T 1vsy_5 506 MSDLFELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLPAVV 585 (997)
T ss_dssp GGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhcCC
Confidence 345556777888888888888899999998775432 34667899999888884 34443332222222222333
Q ss_pred ChHHHHHHHHHHHh----hc-CCCChhHHHHHHHHHHHHHhhhcc-hhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHh
Q 009632 157 PDILKTELRSIYTQ----LC-QDDMPMVRRSAASNLGKFAATVEP-AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALG 230 (530)
Q Consensus 157 ~~~~~~~l~~~l~~----l~-~d~~~~vR~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~ 230 (530)
++.....+++.+.. +. ++.+.-....-+..|..+....+- -.....++..+. +.++...||+.....+..+.
T Consensus 586 DprR~~~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~~~~~l~~~~--l~h~y~~VRe~Ig~~L~~i~ 663 (997)
T 1vsy_5 586 DLRRSKTFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPDVGKLFDELV--FDHPYDQVRQAVAKLLTTLV 663 (997)
T ss_dssp CGGGCHHHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCCCHHHHHHCC--SCCSCHHHHHHHHHHHHHHH
T ss_pred ChhhhHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH--hCCChHHHHHHHHHHHHHHH
Confidence 44444556665522 11 111111111112222222221111 001234444444 66677778887777776665
Q ss_pred hhcCch----------------------------hhhhccHHHHHHhc---C---C--CCHHH---HHHHHHHHHH-HHH
Q 009632 231 KLLEPQ----------------------------DCVAHILPVIVNFS---Q---D--KSWRV---RYMVANQLYE-LCE 270 (530)
Q Consensus 231 ~~~~~~----------------------------~~~~~~~~~l~~~~---~---d--~~~~v---r~~~~~~l~~-l~~ 270 (530)
...-.. .+.+.+...+..+- . + +.... .....+++-. +..
T Consensus 664 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~s~y~~~~kTvl~wl~~ 743 (997)
T 1vsy_5 664 QNQSNPSISDPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQFIKTDYFYRTSTIFYWIKE 743 (997)
T ss_dssp HTSCCCCBSCHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCCSTTTTTSHHHHHHHHHHHHHHH
T ss_pred HhhcccCCCCHHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhcccccCccccchHHHHHHHHHHHHHHHH
Confidence 543100 00000111111110 0 0 00000 1111222221 112
Q ss_pred HhCCc-------ccccchHHHHHHhcCCCcH-HHHHH-HHHHHHHHHHhhCHHHHHhhhhHhHhHhcc-CCcHHHHHHHH
Q 009632 271 AVGPE-------PTRMDLVPAYVRLLRDNEA-EVRIA-AAGKVTKFCRILNPELAIQHILPCVKELSS-DSSQHVRSALA 340 (530)
Q Consensus 271 ~~~~~-------~~~~~l~~~l~~~l~d~~~-~vr~~-a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-d~~~~vr~~~~ 340 (530)
.++.. .....++|.++.+.++++. +.... +..++..++...-.....+.++..+.+... +++| .|..++
T Consensus 744 ~l~~~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L 822 (997)
T 1vsy_5 744 MARGPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQL 822 (997)
T ss_dssp HSSGGGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHH
T ss_pred HhcCCCccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHH
Confidence 22211 0112266666666666654 55554 444555554433333344566667766666 6899 999998
Q ss_pred HHHHhhcc----ccCHHHHHHhHHHHHHHhhcCCC-hHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcC-------
Q 009632 341 SVIMGMAP----LLGKDATIEQLLPIFLSLLKDEF-PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED------- 408 (530)
Q Consensus 341 ~~l~~l~~----~~~~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~------- 408 (530)
..+..+.- .+..+ ....+...+..+|.|+. .+||+.|..+|+.+++..+.....+.++..+.+.+..
T Consensus 823 ~~lq~~~f~n~f~l~~~-~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~ 901 (997)
T 1vsy_5 823 AFIQHFLSAELLQLTEE-EKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKE 901 (997)
T ss_dssp HHHHHHHHHHTTTSCTT-HHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHH
T ss_pred HHHHHHHHHHHHHcCHH-HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhccccccc
Confidence 88665431 12222 23578899999999999 9999999999999988762312122344444333311
Q ss_pred -----CChHHHHHHHHHHHHHHhhhCh----hhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHH
Q 009632 409 -----RHWRVRLAIIEYIPLLASQLGV----GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA 472 (530)
Q Consensus 409 -----~~~~~R~~~~~~l~~l~~~~~~----~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~ 472 (530)
++-..|.+++-.|+.+...++= ..+.+.++..+-....|+.+ |+..+=++++.+-+.....|.
T Consensus 902 ~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~tlseFkrTH~D~W~ 973 (997)
T 1vsy_5 902 RQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNTISEFKKVRADTWK 973 (997)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHHHHHHHHTSTTHH
T ss_pred ccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHhccchhHH
Confidence 1125788899999988887652 34555666666666777655 899999999999888877764
No 105
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=98.22 E-value=0.00024 Score=66.47 Aligned_cols=258 Identities=16% Similarity=0.137 Sum_probs=127.9
Q ss_pred ChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcCCCCH
Q 009632 176 MPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSW 255 (530)
Q Consensus 176 ~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~ 255 (530)
+...++-|++.++.+.+.++.- .+..++.+..++.|++..||..|++.|..+++. .+...+...|.++++..++
T Consensus 41 ~~k~K~LaaQ~I~kffk~FP~l--~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~----~~i~kiaDvL~QlLqtdd~ 114 (507)
T 3u0r_A 41 GTKEKRLAAQFIPKFFKHFPEL--ADSAINAQLDLCEDEDVSIRRQAIKELPQFATG----ENLPRVADILTQLLQTDDS 114 (507)
T ss_dssp CHHHHHHHHHHHHHHGGGCGGG--HHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT----TCHHHHHHHHHHHTTCCCH
T ss_pred CHHHHHHHHHHHHHHHhhChhh--HHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh----hhhhhHHHHHHHHHhccch
Confidence 4666666666666666665542 244556666666776666777777666666654 2355566666666666666
Q ss_pred HHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH----HHHhhhhHhHhHhccCC
Q 009632 256 RVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----LAIQHILPCVKELSSDS 331 (530)
Q Consensus 256 ~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~----~~~~~l~~~l~~~~~d~ 331 (530)
.-+..+-++|..+...-. ...+...+.++.. .++.+|..+++-|..-...++.+ .....+...+.+.++|-
T Consensus 115 ~E~~~V~~sL~sllk~Dp----k~tl~~lf~~i~~-~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DV 189 (507)
T 3u0r_A 115 AEFNLVNNALLSIFKMDA----KGTLGGLFSQILQ-GEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDV 189 (507)
T ss_dssp HHHHHHHHHHHHHHHHCH----HHHHHHHHHHHHH-SCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHhcCh----HHHHHHHHHHHcc-cchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhccc
Confidence 555555555555554311 1122333333333 23566766666655444433322 22334444555555554
Q ss_pred cHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhc-----C-CChHH----HHHHHHhhHHhhhhhchhH----HHhh
Q 009632 332 SQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK-----D-EFPDV----RLNIISKLDQVNQVIGIDL----LSQS 397 (530)
Q Consensus 332 ~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-----d-~~~~v----r~~a~~~l~~l~~~~~~~~----~~~~ 397 (530)
...-=..+...+..+ +.++...-.+.+++++..... + .+.+. ..++-.++.-+........ +.+.
T Consensus 190 T~~EF~L~m~lL~~l-kl~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~~k 268 (507)
T 3u0r_A 190 TGEEFVLFMKILSGL-KSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQ 268 (507)
T ss_dssp CHHHHHHHHHHHHTS-GGGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhc-ccccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHh
Confidence 332212222222222 111212223455555555422 1 12222 2222333333333333222 2345
Q ss_pred HHHHHHHHhcC-CChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHh
Q 009632 398 LLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL 445 (530)
Q Consensus 398 l~~~l~~~~~~-~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l 445 (530)
++|.+..+... +....+...+..+..++...|........+|.+...|
T Consensus 269 IlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~~L 317 (507)
T 3u0r_A 269 VLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKL 317 (507)
T ss_dssp TGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHH
T ss_pred hccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHH
Confidence 66655444322 1223677889999999999884444444555555544
No 106
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=98.13 E-value=0.00016 Score=67.63 Aligned_cols=256 Identities=15% Similarity=0.110 Sum_probs=145.9
Q ss_pred ccchhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchh
Q 009632 138 WFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDS 217 (530)
Q Consensus 138 ~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~ 217 (530)
+...+..|++.|...++.++ +..+.-+..++.+|+|.+..||..|+..|..+++. .+.+.+.+.|.+++..+++.
T Consensus 41 ~~k~K~LaaQ~I~kffk~FP-~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~----~~i~kiaDvL~QlLqtdd~~ 115 (507)
T 3u0r_A 41 GTKEKRLAAQFIPKFFKHFP-ELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG----ENLPRVADILTQLLQTDDSA 115 (507)
T ss_dssp CHHHHHHHHHHHHHHGGGCG-GGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT----TCHHHHHHHHHHHTTCCCHH
T ss_pred CHHHHHHHHHHHHHHHhhCh-hhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh----hhhhhHHHHHHHHHhccchH
Confidence 34566677777777776654 34556677788888888888888888888888765 44677888888888877776
Q ss_pred HHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCccc----ccchHHHHHHhcCCCc
Q 009632 218 VRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT----RMDLVPAYVRLLRDNE 293 (530)
Q Consensus 218 vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~----~~~l~~~l~~~l~d~~ 293 (530)
-+...-.+|..+.+.-++..+ -..+.++.+ .+..+|.-+.+.|..-...++.+.. ...+...+.+.+.|-.
T Consensus 116 E~~~V~~sL~sllk~Dpk~tl----~~lf~~i~~-~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DVT 190 (507)
T 3u0r_A 116 EFNLVNNALLSIFKMDAKGTL----GGLFSQILQ-GEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDVT 190 (507)
T ss_dssp HHHHHHHHHHHHHHHCHHHHH----HHHHHHHHH-SCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHhcChHHHH----HHHHHHHcc-cchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhcccc
Confidence 666677777777665443321 112222222 3567888877777665555554432 2345566666666543
Q ss_pred HHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhcc-----C-CcH----HHHHHHHHHHHhhccccCHHHHHHhHHHHH
Q 009632 294 AEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS-----D-SSQ----HVRSALASVIMGMAPLLGKDATIEQLLPIF 363 (530)
Q Consensus 294 ~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-----d-~~~----~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l 363 (530)
.+==.-.+..|..+ +..+...-.+.+++.+.+.+. + .+. +....+-.++..++.......|...+...+
T Consensus 191 ~~EF~L~m~lL~~l-kl~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~~kI 269 (507)
T 3u0r_A 191 GEEFVLFMKILSGL-KSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQV 269 (507)
T ss_dssp HHHHHHHHHHHHTS-GGGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc-ccccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHhh
Confidence 21111111111111 111111223455666654422 1 122 333444445555555555555555555555
Q ss_pred HHhhcCCCh-----HHHHHHHHhhHHhhhhhchhHHHhhHHHHHHH
Q 009632 364 LSLLKDEFP-----DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVE 404 (530)
Q Consensus 364 ~~~l~d~~~-----~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~ 404 (530)
+..+++-.. ..+...++.++.++...|........++.+.+
T Consensus 270 lP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~ 315 (507)
T 3u0r_A 270 LPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFD 315 (507)
T ss_dssp GGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHH
T ss_pred ccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHH
Confidence 555554333 37889999999999888832222344444443
No 107
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.12 E-value=0.005 Score=63.25 Aligned_cols=86 Identities=14% Similarity=0.139 Sum_probs=61.6
Q ss_pred hhccccccccccCCchHHHHHHHHHHhcccccCCCccch------hcchhHHHhhhcccchHHHHHHHHHHHHHHhhcCh
Q 009632 46 RKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHA------HVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE 119 (530)
Q Consensus 46 ~~~l~~~l~~~~d~~~~vr~~~~~~l~~~~~~~~~~~~~------~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~ 119 (530)
.+.++|.+..+.++++..|..++.++++++. + +... ..+.+++..++.|++..||..|+.+|++++..-+.
T Consensus 33 ~~~i~Pll~~L~S~~~~~r~~A~~al~~l~~--~-~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~ 109 (684)
T 4gmo_A 33 EDKILPVLKDLKSPDAKSRTTAAGAIANIVQ--D-AKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEA 109 (684)
T ss_dssp HHTTHHHHHHHSSSCCSHHHHHHHHHHHHTT--S-HHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCH
T ss_pred hhhHHHHHHHcCCCCHHHHHHHHHHHHHHHc--C-cHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCc
Confidence 3478888877888899999999999998875 2 2221 23445677888899999999999999999877666
Q ss_pred hhhhhh----HHHHHHHHh
Q 009632 120 SDLVDW----YIPLVKRLA 134 (530)
Q Consensus 120 ~~~~~~----l~~~l~~l~ 134 (530)
+..... +++.+..+.
T Consensus 110 d~~~~l~~~~il~~L~~~l 128 (684)
T 4gmo_A 110 DFCVHLYRLDVLTAIEHAA 128 (684)
T ss_dssp HHHHHHHHTTHHHHHHHHH
T ss_pred hHHHHHHHcChHHHHHHHH
Confidence 555442 444444443
No 108
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=98.06 E-value=0.0051 Score=60.59 Aligned_cols=322 Identities=13% Similarity=0.093 Sum_probs=164.4
Q ss_pred hhcchhHH-HhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChHHHH
Q 009632 84 AHVLLPPL-ETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKT 162 (530)
Q Consensus 84 ~~~l~~~l-~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~~ 162 (530)
....++.| .++.+..-.+=|+.|+.+|..+++..+.......+.+++..+-+|..+ .+..+
T Consensus 19 ~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D------------------~e~v~ 80 (651)
T 3grl_A 19 EAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSD------------------SEIIG 80 (651)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTC------------------HHHHH
T ss_pred hhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhccccc------------------HHHHH
Confidence 33444433 444555667778888888888888776654444455555555554321 11122
Q ss_pred HHHHHHHhhc-CCCChhH-H--HHHHHHHHH-HHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchh
Q 009632 163 ELRSIYTQLC-QDDMPMV-R--RSAASNLGK-FAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD 237 (530)
Q Consensus 163 ~l~~~l~~l~-~d~~~~v-R--~~a~~~l~~-l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~ 237 (530)
.+++.+..++ .+.++.- + .....-++. ++..+- -.++-++.+..+++.++..+|..+++.|..++..-+...
T Consensus 81 ~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~---~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~ 157 (651)
T 3grl_A 81 YALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFI---KQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQV 157 (651)
T ss_dssp HHHHHHHHHHCCC--------------CHHHHHHHHHH---HSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHH
T ss_pred HHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHH---cCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHH
Confidence 2222222211 1111000 0 000000110 000000 013455666777777777777777777777776554311
Q ss_pred ---h--hhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC---cccccchHHHHHHhcCCCc----HHHHHHHHHHHH
Q 009632 238 ---C--VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNE----AEVRIAAAGKVT 305 (530)
Q Consensus 238 ---~--~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~----~~vr~~a~~~l~ 305 (530)
+ .+.-++.+..+++|+...+|..+...|..+...-.. -..-+..++.++.++.++. ..|..-++..+.
T Consensus 158 Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~ 237 (651)
T 3grl_A 158 QQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQ 237 (651)
T ss_dssp HHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHH
T ss_pred HHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHH
Confidence 1 124566677777777777777777777666643110 0112234555555555433 366677777777
Q ss_pred HHHHhhC--HHHHH-hhhhHhHhHhccC----CcHH---HH--HHHHHHHHhhccccCH---------HHHHHhHHHHHH
Q 009632 306 KFCRILN--PELAI-QHILPCVKELSSD----SSQH---VR--SALASVIMGMAPLLGK---------DATIEQLLPIFL 364 (530)
Q Consensus 306 ~~~~~~~--~~~~~-~~l~~~l~~~~~d----~~~~---vr--~~~~~~l~~l~~~~~~---------~~~~~~l~~~l~ 364 (530)
.+.+.=. ...+. ...+|.+..+++. ..|. ++ ..+...+..+...-+. ..+...+++.+.
T Consensus 238 nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll 317 (651)
T 3grl_A 238 NLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLC 317 (651)
T ss_dssp HHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHH
Confidence 7765421 11221 2345555554432 2342 22 1244555555543221 112334566677
Q ss_pred HhhcCC--ChHHHHHHHHhhHHhhhhhchh--HHH----------hhHHHHHHHHhcCC-ChHHHHHHHHHHHHHHh
Q 009632 365 SLLKDE--FPDVRLNIISKLDQVNQVIGID--LLS----------QSLLPAIVELAEDR-HWRVRLAIIEYIPLLAS 426 (530)
Q Consensus 365 ~~l~d~--~~~vr~~a~~~l~~l~~~~~~~--~~~----------~~l~~~l~~~~~~~-~~~~R~~~~~~l~~l~~ 426 (530)
+++-.. ...+|..|+.+++.++...... .+. ..++..+..+..+. ...+|.+++.++.....
T Consensus 318 ~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~ 394 (651)
T 3grl_A 318 TILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLY 394 (651)
T ss_dssp HHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHh
Confidence 776544 5679999999999987543211 111 23444455555544 58899999999987753
No 109
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=98.00 E-value=0.0046 Score=60.92 Aligned_cols=325 Identities=14% Similarity=0.158 Sum_probs=185.8
Q ss_pred HHHHHHHHHh-hcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCC--chhHHHHHHHHHHHHhhhcCchh
Q 009632 161 KTELRSIYTQ-LCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDD--QDSVRLLAVEGCAALGKLLEPQD 237 (530)
Q Consensus 161 ~~~l~~~l~~-l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~--~~~vr~~a~~~l~~l~~~~~~~~ 237 (530)
..+-++.+.. +-+..-.+=|+.|+..|..+++..+.+ +...-++.+...+.++ +.++-..++++|..+...-+.+.
T Consensus 19 ~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~-Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~ 97 (651)
T 3grl_A 19 EAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLE-VGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEE 97 (651)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTH-HHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC----
T ss_pred hhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHH-hhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCccc
Confidence 3444444443 444566778999999999998765443 3344456666655543 44566667777766543222111
Q ss_pred hhhccHHHHHHhcCCCCHHHHHHHHHHHH-HHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH--
Q 009632 238 CVAHILPVIVNFSQDKSWRVRYMVANQLY-ELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE-- 314 (530)
Q Consensus 238 ~~~~~~~~l~~~~~d~~~~vr~~~~~~l~-~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~-- 314 (530)
- .. .+..........+. .+.. ...-++.++.+++.++..+|..+++.|..++..-+..
T Consensus 98 ~-~~-----------~~~~~~~~~~~~~~d~f~~-------~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q 158 (651)
T 3grl_A 98 V-EE-----------NSTRQSEDLGSQFTEIFIK-------QQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQ 158 (651)
T ss_dssp ----------------------CHHHHHHHHHHH-------STHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred c-cc-----------cccccchHHHHHHHHHHHc-------CCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHH
Confidence 0 00 00000000111111 1111 2456888999999999999999999999998765442
Q ss_pred -HH--HhhhhHhHhHhccCCcHHHHHHHHHHHHhhccccCH---HHHHHhHHHHHHHhhcCCCh----HHHHHHHHhhHH
Q 009632 315 -LA--IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFP----DVRLNIISKLDQ 384 (530)
Q Consensus 315 -~~--~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~----~vr~~a~~~l~~ 384 (530)
.+ .+.-++.+..++.|+..-+|..++-.+..+...-.. -...+..++.++.++..+.. .|-..++..+..
T Consensus 159 ~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~n 238 (651)
T 3grl_A 159 QIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQN 238 (651)
T ss_dssp HHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHH
T ss_pred HHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHH
Confidence 11 235678888999999999999999998888764321 01122345667777765443 556666677777
Q ss_pred hhhhhchh--HHH-hhHHHHHHHHhcCC----ChHHHH--H---HHHHHHHHHhhhCh---------hhHHHHHHHHHHH
Q 009632 385 VNQVIGID--LLS-QSLLPAIVELAEDR----HWRVRL--A---IIEYIPLLASQLGV---------GFFDDKLGALCMQ 443 (530)
Q Consensus 385 l~~~~~~~--~~~-~~l~~~l~~~~~~~----~~~~R~--~---~~~~l~~l~~~~~~---------~~~~~~~~~~l~~ 443 (530)
+.+.-..+ .+. ...+|.+..+++.+ .|.-+. . ++.++..+...-+. ..+...+++.+.+
T Consensus 239 LLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ 318 (651)
T 3grl_A 239 LLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCT 318 (651)
T ss_dssp HHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHH
Confidence 76543211 121 23445555554422 343221 1 34444444332221 1123346677777
Q ss_pred HhcCC--cHHHHHHHHHHHHHHHHHhChh---HHh---------hhhHHHHHhhccC-CChHHHHHHHHHHHHHhhh
Q 009632 444 WLQDK--VYSIRDAAANNLKRLAEEFGPE---WAM---------QHITPQVLEMINN-PHYLYRMTILRAISLLAPV 505 (530)
Q Consensus 444 ~l~d~--~~~Vr~~a~~~l~~l~~~~~~~---~~~---------~~i~~~l~~~~~d-~~~~vr~~a~~~l~~i~~~ 505 (530)
++..+ ...||..|+.+++.+.+..... +.. ..++..+..+.++ ...+.|.+++.++..+...
T Consensus 319 ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~ 395 (651)
T 3grl_A 319 ILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYK 395 (651)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhC
Confidence 76544 4679999999999987643211 111 1234445555655 4688999999999988753
No 110
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=97.91 E-value=0.00021 Score=61.77 Aligned_cols=148 Identities=11% Similarity=0.066 Sum_probs=96.5
Q ss_pred HHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh--H-HHhhHHHHHHHHhc-CCChHHHHHHHHHHHHHHhhhC-hhhH
Q 009632 359 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--L-LSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLG-VGFF 433 (530)
Q Consensus 359 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~-~~~~l~~~l~~~~~-~~~~~~R~~~~~~l~~l~~~~~-~~~~ 433 (530)
.+|.+..+|+.++..++..|+.+|..+...-... . ....-+|.|.+++. .+++.++..++.+|..++..-. +..+
T Consensus 53 ~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i 132 (233)
T 3tt9_A 53 GILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLM 132 (233)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHH
Confidence 4577888888888888888888888876421111 1 12356788888886 5688999999988888876433 2223
Q ss_pred HHHHHHHHHHHhc-------C---------CcHHHHHHHHHHHHHHHHHh--ChhHHh--hhhHHHHHhhcc------CC
Q 009632 434 DDKLGALCMQWLQ-------D---------KVYSIRDAAANNLKRLAEEF--GPEWAM--QHITPQVLEMIN------NP 487 (530)
Q Consensus 434 ~~~~~~~l~~~l~-------d---------~~~~Vr~~a~~~l~~l~~~~--~~~~~~--~~i~~~l~~~~~------d~ 487 (530)
...-+|.+..++. + .+..|+..|..+|..+...- ...... .-+++.|..+++ ++
T Consensus 133 ~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~ 212 (233)
T 3tt9_A 133 ITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQP 212 (233)
T ss_dssp HHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCT
T ss_pred HhccHHHHHHHHhccccCCcccccccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccc
Confidence 3344565554431 1 25689999999999886531 111111 346677776643 24
Q ss_pred ChHHHHHHHHHHHHHhhhc
Q 009632 488 HYLYRMTILRAISLLAPVM 506 (530)
Q Consensus 488 ~~~vr~~a~~~l~~i~~~~ 506 (530)
+...+++++.++.++.-.+
T Consensus 213 ~~k~~En~v~~L~nLs~~~ 231 (233)
T 3tt9_A 213 DDKATENCVCILHNLSYQL 231 (233)
T ss_dssp TCHHHHHHHHHHHHHCCCC
T ss_pred hhHHHHHHHHHHHHHHhhh
Confidence 6678899999999886543
No 111
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=97.86 E-value=0.00041 Score=59.97 Aligned_cols=185 Identities=12% Similarity=0.117 Sum_probs=109.3
Q ss_pred cHHHHHHhcCCCCH--HHHHHHHHHHHHHHHHhC---CcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC-HH-
Q 009632 242 ILPVIVNFSQDKSW--RVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN-PE- 314 (530)
Q Consensus 242 ~~~~l~~~~~d~~~--~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~-~~- 314 (530)
-+|.+.++++++++ .++..++..+..++..-. ........+|.++++|..++++++..|+.+|..++..-. ..
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 45556666665554 666666666666554311 111223457888888888888888888888888875211 11
Q ss_pred -HHHhhhhHhHhHhcc-CCcHHHHHHHHHHHHhhccccC-HHHHHHhHHHHHHHhhc-------C---------CChHHH
Q 009632 315 -LAIQHILPCVKELSS-DSSQHVRSALASVIMGMAPLLG-KDATIEQLLPIFLSLLK-------D---------EFPDVR 375 (530)
Q Consensus 315 -~~~~~l~~~l~~~~~-d~~~~vr~~~~~~l~~l~~~~~-~~~~~~~l~~~l~~~l~-------d---------~~~~vr 375 (530)
......+|.+.+++. ..++.++..++..+..++..-. +......-+|.+..++. + .+..|+
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~ 168 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIF 168 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchHHHH
Confidence 222345777777776 4678888888877777764322 23333444565555432 1 256888
Q ss_pred HHHHHhhHHhhhhh--chhHHH--hhHHHHHHHHhcC------CChHHHHHHHHHHHHHHh
Q 009632 376 LNIISKLDQVNQVI--GIDLLS--QSLLPAIVELAED------RHWRVRLAIIEYIPLLAS 426 (530)
Q Consensus 376 ~~a~~~l~~l~~~~--~~~~~~--~~l~~~l~~~~~~------~~~~~R~~~~~~l~~l~~ 426 (530)
..|..+|.++...- +...+. ..+++.|+.+++. .+...++.++.+|..++.
T Consensus 169 ~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~ 229 (233)
T 3tt9_A 169 YNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY 229 (233)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence 88888888876421 111221 2356666555432 245677777777777654
No 112
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=97.72 E-value=0.02 Score=58.77 Aligned_cols=86 Identities=19% Similarity=0.226 Sum_probs=61.7
Q ss_pred cHHHHHHHhcChhHHHHHHHhhcHHHHHHhhChHhh----hhccc-ccccc-ccCCchHHHHHHHHHHhcccccCCCccc
Q 009632 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERT----RKELI-PFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEH 83 (530)
Q Consensus 10 ~~~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~----~~~l~-~~l~~-~~d~~~~vr~~~~~~l~~~~~~~~~~~~ 83 (530)
.|..+++.|+|+|+..|..|+.+|..++. +++.. .+.++ +.+.. +.|++.+||.+++.+|++++..-| .+.
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~--~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g-~d~ 111 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIVQ--DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEE-ADF 111 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHTT--SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSC-HHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHc--CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcC-chH
Confidence 45678999999999999999999999975 33321 22344 44556 789999999999999999977533 444
Q ss_pred hhc-----chhHHHhhhccc
Q 009632 84 AHV-----LLPPLETLCTVE 98 (530)
Q Consensus 84 ~~~-----l~~~l~~l~~d~ 98 (530)
... +++.|..++...
T Consensus 112 ~~~l~~~~il~~L~~~l~~~ 131 (684)
T 4gmo_A 112 CVHLYRLDVLTAIEHAAKAV 131 (684)
T ss_dssp HHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHhh
Confidence 443 455555555433
No 113
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=97.15 E-value=0.057 Score=47.12 Aligned_cols=129 Identities=14% Similarity=0.213 Sum_probs=92.9
Q ss_pred HHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHH
Q 009632 374 VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIR 453 (530)
Q Consensus 374 vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr 453 (530)
.+...+....+++-.-.+ .+.+++++.+..+..+++..+|...+.++...+.. ........++.+..++.|+++.|.
T Consensus 31 ~kl~~L~qa~el~~~~dp-~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~--k~~l~~~~l~~L~~Ll~d~d~~V~ 107 (257)
T 3gs3_A 31 TKCELLAKVQETVLGSCA-ELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV--KVELLPHVINVVSMLLRDNSAQVI 107 (257)
T ss_dssp HHHHHHHHHHHHHTTTTG-GGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHHHHHccCH-hHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHHH
Confidence 444444444443332222 24577888888888888899999999999887743 344567788889999999999999
Q ss_pred HHHHHHHHHHHHHh-------C-------hhHHh-hhhHHHHHhhccCCChHHHHHHHHHHHHHhhh
Q 009632 454 DAAANNLKRLAEEF-------G-------PEWAM-QHITPQVLEMINNPHYLYRMTILRAISLLAPV 505 (530)
Q Consensus 454 ~~a~~~l~~l~~~~-------~-------~~~~~-~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~ 505 (530)
+.++.+.+.++... + ..|.. ..+...+.+.....+..+|..+++++..++..
T Consensus 108 K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~ 174 (257)
T 3gs3_A 108 KRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVL 174 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHh
Confidence 99999988887642 1 11221 45566677778888999999999999998743
No 114
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=97.07 E-value=0.036 Score=59.79 Aligned_cols=246 Identities=10% Similarity=-0.002 Sum_probs=132.7
Q ss_pred hcCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhh
Q 009632 152 AYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGK 231 (530)
Q Consensus 152 l~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~ 231 (530)
+...++.+....+.+.+.. .+..|.....+++.... ...+..+.+++..++-...+ |...+.....
T Consensus 319 ~lR~~~~e~L~~l~~~~~~-----~~~~r~~~lDal~~aGT--------~~a~~~i~~~i~~~~l~~~e-a~~~l~~~~~ 384 (1056)
T 1lsh_A 319 FLRNVDAGVLQSIWHKLHQ-----QKDYRRWILDAVPAMAT--------SEALLFLKRTLASEQLTSAE-ATQIVASTLS 384 (1056)
T ss_dssp HHTTSCHHHHHHHHHHHTT-----SHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHTTCSCHHH-HHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHhc-----cHHHHHHHHHHhHhcCC--------HHHHHHHHHHHHcCCCCHHH-HHHHHHHhhc
Confidence 4455555544444444331 35667765555554332 22334444444443322222 4444443332
Q ss_pred hcCchhhhhccHHHHHHhcCC----CCHHHHHHHHHHHHHHHHHhCCc------ccccchHHHHHHhcCCCcHHHHHHHH
Q 009632 232 LLEPQDCVAHILPVIVNFSQD----KSWRVRYMVANQLYELCEAVGPE------PTRMDLVPAYVRLLRDNEAEVRIAAA 301 (530)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~~~d----~~~~vr~~~~~~l~~l~~~~~~~------~~~~~l~~~l~~~l~d~~~~vr~~a~ 301 (530)
...+ ....+..+..++.+ .++.+|.++.-+++.++...... .....+...+.+.+...+.+-+..++
T Consensus 385 ~~~P---t~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~L 461 (1056)
T 1lsh_A 385 NQQA---TRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLAL 461 (1056)
T ss_dssp TCCC---CHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCC---CHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 2222 12245555556554 46789999999999988765322 11234455555556666677788888
Q ss_pred HHHHHHHHhhCHHHHHhhhhHhHhHh---ccCCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhh--cCCChHHHH
Q 009632 302 GKVTKFCRILNPELAIQHILPCVKEL---SSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL--KDEFPDVRL 376 (530)
Q Consensus 302 ~~l~~~~~~~~~~~~~~~l~~~l~~~---~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l--~d~~~~vr~ 376 (530)
++|+.++.- . ..+.+.+++... ..+...++|..++.++..++... ...+-+++++.. .+.+.++|.
T Consensus 462 kaLGN~g~p---~-~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~-----p~~v~~il~~i~~n~~e~~EvRi 532 (1056)
T 1lsh_A 462 KALGNAGQP---N-SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD-----PRKVQEIVLPIFLNVAIKSELRI 532 (1056)
T ss_dssp HHHHHHTCG---G-GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC-----HHHHHHHHHHHHHCTTSCHHHHH
T ss_pred HHhhccCCh---h-HHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc-----hHHHHHHHHHHhcCCCCChHHHH
Confidence 888888642 1 112333333221 12335689999999888887432 223445566666 446789999
Q ss_pred HHHHhhHHhhhhhchhHHHhhHHHHHHHHh-cCCChHHHHHHHHHHHHHHhhhCh
Q 009632 377 NIISKLDQVNQVIGIDLLSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQLGV 430 (530)
Q Consensus 377 ~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~-~~~~~~~R~~~~~~l~~l~~~~~~ 430 (530)
+|+..+-... .+ ...+..+...+ .+++.+++.-....+..+++.-.+
T Consensus 533 aA~~~Lm~t~---P~----~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P 580 (1056)
T 1lsh_A 533 RSCIVFFESK---PS----VALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP 580 (1056)
T ss_dssp HHHHHHHHTC---CC----HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHC---cC----HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence 9987764321 11 12333333333 346677777776666666665443
No 115
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=96.94 E-value=0.027 Score=60.76 Aligned_cols=157 Identities=10% Similarity=0.037 Sum_probs=103.0
Q ss_pred CcHHHHHHHHHHHHhhccc-------cCHHHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHH
Q 009632 331 SSQHVRSALASVIMGMAPL-------LGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV 403 (530)
Q Consensus 331 ~~~~vr~~~~~~l~~l~~~-------~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~ 403 (530)
.++.+|..++-+++.++.. +. ....+.+...+...+...+..-+..++.+|+++..- ..++.+.
T Consensus 407 ~~~~l~~ta~La~gslV~k~c~~~~~c~-~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p--------~~l~~l~ 477 (1056)
T 1lsh_A 407 NRPILRKTAVLGYGSLVFRYCANTVSCP-DELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP--------NSIKKIQ 477 (1056)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTCSSCC-GGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG--------GGHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHhccCCCCC-HHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh--------hHHHHHH
Confidence 4566777777666665432 22 223455666677777777888889999999987652 3455555
Q ss_pred HHhc-------CCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHh--cCCcHHHHHHHHHHHHHHHHHhChhHHhh
Q 009632 404 ELAE-------DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL--QDKVYSIRDAAANNLKRLAEEFGPEWAMQ 474 (530)
Q Consensus 404 ~~~~-------~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l--~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~ 474 (530)
+++. +...++|.+|+.++..++.. . ...+.+.++... .+...+||.+|+..|- ..... .
T Consensus 478 ~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~-~----p~~v~~il~~i~~n~~e~~EvRiaA~~~Lm---~t~P~----~ 545 (1056)
T 1lsh_A 478 RFLPGQGKSLDEYSTRVQAEAIMALRNIAKR-D----PRKVQEIVLPIFLNVAIKSELRIRSCIVFF---ESKPS----V 545 (1056)
T ss_dssp TTSTTSSSCCCCSCHHHHHHHHHTTTTGGGT-C----HHHHHHHHHHHHHCTTSCHHHHHHHHHHHH---HTCCC----H
T ss_pred HhhcCccccccccchHHHHHHHHHHHHhhhh-c----hHHHHHHHHHHhcCCCCChHHHHHHHHHHH---HHCcC----H
Confidence 5543 22457899999999888642 1 223445555555 4567899999999863 22221 2
Q ss_pred hhHHHHHhh-ccCCChHHHHHHHHHHHHHhhhcCh
Q 009632 475 HITPQVLEM-INNPHYLYRMTILRAISLLAPVMGS 508 (530)
Q Consensus 475 ~i~~~l~~~-~~d~~~~vr~~a~~~l~~i~~~~~~ 508 (530)
..+..+... -.+++..|+......|..+.+.-.+
T Consensus 546 ~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P 580 (1056)
T 1lsh_A 546 ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP 580 (1056)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence 234444443 4568999999999999999887654
No 116
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=96.94 E-value=0.18 Score=44.06 Aligned_cols=69 Identities=19% Similarity=0.251 Sum_probs=38.9
Q ss_pred hhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 009632 238 CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFC 308 (530)
Q Consensus 238 ~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~ 308 (530)
+.+.+++.+..+..|.+..+|+.++..++..+.. +.......++.+..+++|+++.|.+.++.+...+.
T Consensus 50 ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~--k~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY 118 (257)
T 3gs3_A 50 LAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV--KVELLPHVINVVSMLLRDNSAQVIKRVIQACGSIY 118 (257)
T ss_dssp GHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 4455555555555555666666666666555532 12223445566666666666666666666665554
No 117
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=96.92 E-value=0.043 Score=45.34 Aligned_cols=142 Identities=11% Similarity=0.115 Sum_probs=92.0
Q ss_pred HHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcC------CChHHHHHHHHHHHHHHhh--hChhhHHHHHHHHHHHH
Q 009632 373 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED------RHWRVRLAIIEYIPLLASQ--LGVGFFDDKLGALCMQW 444 (530)
Q Consensus 373 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~------~~~~~R~~~~~~l~~l~~~--~~~~~~~~~~~~~l~~~ 444 (530)
..|..|+..+..= -| .+.++|.+..+..+ .++..-...++....+... +.-+.+...++|.++.+
T Consensus 23 ~~r~~aL~sL~~D---~g----L~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtC 95 (196)
T 4atg_A 23 DMKDIAIECLEKE---SG----LQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTC 95 (196)
T ss_dssp TTHHHHHHHHHHC---SS----CTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC---CC----hhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHH
Confidence 4577776666542 22 25677776655433 2455555555666655542 23455677899998887
Q ss_pred hcC---CcHHHHHHHHHHHHHHHHHhChh--HHhhhhHHHHHhhccCC--ChHHHHHHHHHHHHHhhhcChHHHHhhHHH
Q 009632 445 LQD---KVYSIRDAAANNLKRLAEEFGPE--WAMQHITPQVLEMINNP--HYLYRMTILRAISLLAPVMGSEITCSRLLP 517 (530)
Q Consensus 445 l~d---~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~d~--~~~vr~~a~~~l~~i~~~~~~~~~~~~~~p 517 (530)
+-. ....+|..|++.++.++..+|.. ..+..+...+.+.+.|| +...+-+|+..+.. +|.+.+...++|
T Consensus 96 ll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~----lG~~~vr~~llP 171 (196)
T 4atg_A 96 VIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSI----LSKNVVNTVIRE 171 (196)
T ss_dssp HHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH----HCHHHHHTHHHH
T ss_pred HHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHH----hHHHHHHHhhhc
Confidence 632 11279999999999999999864 33467777777778776 44556666666554 455666667778
Q ss_pred HHHhhccC
Q 009632 518 VVINASKD 525 (530)
Q Consensus 518 ~l~~~l~D 525 (530)
.+..+.++
T Consensus 172 ~l~~~~~~ 179 (196)
T 4atg_A 172 HAEEYKRT 179 (196)
T ss_dssp HHHHHHHH
T ss_pred CHHHHHHH
Confidence 88776543
No 118
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=96.79 E-value=0.086 Score=48.86 Aligned_cols=129 Identities=15% Similarity=0.165 Sum_probs=96.2
Q ss_pred HHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHH
Q 009632 374 VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIR 453 (530)
Q Consensus 374 vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr 453 (530)
.+...+....+++-.-.+ .+.+.+++.+..+..+++..+|...+.++...+.. ...+...+++.+..++.|.++.|.
T Consensus 41 ~Kl~~L~q~~EL~l~~dp-sLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~--~~el~~~~l~~L~~LL~d~d~~V~ 117 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDP-TLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR--DIELLLKLIANLNMLLRDENVNVV 117 (386)
T ss_dssp HHHHHHHHHHHHHHTTCG-GGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTCSSHHHH
T ss_pred HHHHHHHHHHHHHhccCH-HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHHH
Confidence 455555555554332222 34578999999999999999999999999988753 333457789999999999999999
Q ss_pred HHHHHHHHHHHHHh--------C------hhHHh-hhhHHHHHhhccCCChHHHHHHHHHHHHHhhh
Q 009632 454 DAAANNLKRLAEEF--------G------PEWAM-QHITPQVLEMINNPHYLYRMTILRAISLLAPV 505 (530)
Q Consensus 454 ~~a~~~l~~l~~~~--------~------~~~~~-~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~ 505 (530)
+.++.+.+.++... + ..|.. ..+...+.+.....+..+|..+++++..++..
T Consensus 118 K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~ 184 (386)
T 3o2t_A 118 KKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVT 184 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHH
Confidence 99999998887432 1 12322 45566677778888999999999999998753
No 119
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=96.24 E-value=0.74 Score=42.66 Aligned_cols=69 Identities=28% Similarity=0.346 Sum_probs=36.6
Q ss_pred hhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 009632 238 CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFC 308 (530)
Q Consensus 238 ~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~ 308 (530)
..+.++|.+..+..|.+..+|+.++..|+..+.. +......+++.+..+++|+++.|.+.++.+...+.
T Consensus 60 Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~--~~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslY 128 (386)
T 3o2t_A 60 LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR--DIELLLKLIANLNMLLRDENVNVVKKAILTMTQLY 128 (386)
T ss_dssp GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 3445555555555555555666665555555432 11112345555555566666666666555555443
No 120
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=94.92 E-value=2 Score=38.59 Aligned_cols=106 Identities=12% Similarity=0.080 Sum_probs=78.8
Q ss_pred HHHHhhcCCChHHHHHHHHhhHHhhhhh---chhHH---HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHH-
Q 009632 362 IFLSLLKDEFPDVRLNIISKLDQVNQVI---GIDLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD- 434 (530)
Q Consensus 362 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~---~~~~~---~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~- 434 (530)
-++..++.++.+|-..|..++..+.... ..+.+ .+.+.....+++.++||-+|..++..|+.+.---....+.
T Consensus 168 ~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~ 247 (341)
T 1upk_A 168 DFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMT 247 (341)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHH
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHH
Confidence 3556788888999999988888775431 11221 1456777778899999999999999999886422111111
Q ss_pred -----HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh
Q 009632 435 -----DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF 467 (530)
Q Consensus 435 -----~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~ 467 (530)
..-+..++.+|.|+..+++..|..++..++..-
T Consensus 248 ~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP 285 (341)
T 1upk_A 248 KYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP 285 (341)
T ss_dssp HHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred HHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCC
Confidence 346788999999999999999999999887653
No 121
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=94.67 E-value=0.71 Score=38.11 Aligned_cols=90 Identities=13% Similarity=0.163 Sum_probs=65.8
Q ss_pred HHHHHhHHHHHHHhhcC---CChHHHHHHHHhhHHhhhhhch--hHHHhhHHHHHHHHhcCC--ChHHHHHHHHHHHHHH
Q 009632 353 DATIEQLLPIFLSLLKD---EFPDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVELAEDR--HWRVRLAIIEYIPLLA 425 (530)
Q Consensus 353 ~~~~~~l~~~l~~~l~d---~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~~~--~~~~R~~~~~~l~~l~ 425 (530)
+.+...++|.++.++-. ....+|..|+..++.++..+|. ..+.+.+...+.+.+.|+ +...+..|+..+..+
T Consensus 82 epYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~l- 160 (196)
T 4atg_A 82 DPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSIL- 160 (196)
T ss_dssp GGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHh-
Confidence 56677888888887632 1238999999999999999886 345567777777777665 567777787777665
Q ss_pred hhhChhhHHHHHHHHHHHHhc
Q 009632 426 SQLGVGFFDDKLGALCMQWLQ 446 (530)
Q Consensus 426 ~~~~~~~~~~~~~~~l~~~l~ 446 (530)
|.+.+...++|.+..+.+
T Consensus 161 ---G~~~vr~~llP~l~~~~~ 178 (196)
T 4atg_A 161 ---SKNVVNTVIREHAEEYKR 178 (196)
T ss_dssp ---CHHHHHTHHHHHHHHHHH
T ss_pred ---HHHHHHHhhhcCHHHHHH
Confidence 666666667788766664
No 122
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=93.59 E-value=1.8 Score=34.05 Aligned_cols=84 Identities=10% Similarity=0.029 Sum_probs=65.2
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHh----hhhHHHHHhhccC------CChHHHHHHHHHHHHHhh
Q 009632 435 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM----QHITPQVLEMINN------PHYLYRMTILRAISLLAP 504 (530)
Q Consensus 435 ~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~----~~i~~~l~~~~~d------~~~~vr~~a~~~l~~i~~ 504 (530)
...+..+.+-+..+++.|...|+..+..+++++|..+.. .+++..|.+++.+ .+..||..++..+..+..
T Consensus 47 k~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 47 PLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 446667778888999999999999999999999987643 5678888887764 477899999999999998
Q ss_pred hcChHHHHhhHHHH
Q 009632 505 VMGSEITCSRLLPV 518 (530)
Q Consensus 505 ~~~~~~~~~~~~p~ 518 (530)
.++.+.-....+..
T Consensus 127 ~f~~~p~i~~~Y~~ 140 (149)
T 3g2s_A 127 GLPEEVKIAEAYQM 140 (149)
T ss_dssp HCTTCHHHHHHHHH
T ss_pred HhCCCchHHHHHHH
Confidence 88654333333333
No 123
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=93.47 E-value=0.93 Score=38.67 Aligned_cols=130 Identities=10% Similarity=-0.025 Sum_probs=86.5
Q ss_pred HHHHHHhcCCccchhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcC-CCChhHHHHHHHHHHHHHhhhcchhhHHHHHHH
Q 009632 128 PLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQ-DDMPMVRRSAASNLGKFAATVEPAHLKTDIMSI 206 (530)
Q Consensus 128 ~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~-d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~ 206 (530)
.++..+.+++..+.|..++.+++.......+ +-++.+...+. -++|.+-...+.+++.++..- ...+.+.
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~~----~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~-----~~~~~~~ 128 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQRFSL----EEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALH-----LTELPTI 128 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGGCCH----HHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHS-----GGGHHHH
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhhCCH----HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHC-----hHHHHHH
Confidence 4556666667777888888888766544443 33444444443 567888777776677766532 1235677
Q ss_pred HHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 009632 207 FEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCE 270 (530)
Q Consensus 207 l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~ 270 (530)
+.+.+.|++.-+|..|+..+-. . ........+++.+..+..|++.-||.+++..|..++.
T Consensus 129 i~~W~~s~~~w~rR~ai~~~l~---~-~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k 188 (220)
T 2b6c_A 129 FALFYGAENFWNRRVALNLQLM---L-KEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSK 188 (220)
T ss_dssp HHHHTTCSSHHHHHHHHHTTTT---C-GGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCHHHHHHHHHHHHH---H-HHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHh
Confidence 8888999988888887775521 1 2223345567777778888888888888888877764
No 124
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=93.41 E-value=1 Score=35.10 Aligned_cols=98 Identities=11% Similarity=0.082 Sum_probs=70.5
Q ss_pred hcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHh----hhhHHHHH
Q 009632 406 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM----QHITPQVL 481 (530)
Q Consensus 406 ~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~----~~i~~~l~ 481 (530)
..+++|..-...+..+.. ++ .-....+..+.+-+..+++.+...|+..+..+++++|..+.. .+++..+.
T Consensus 18 l~~~dw~~ileicD~I~~-----~~-~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~ 91 (140)
T 3ldz_A 18 NTAEDWGLILDICDKVGQ-----SR-TGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVS 91 (140)
T ss_dssp SSSCCHHHHHHHHHHHTT-----ST-THHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHC-----CC-cCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHH
Confidence 345677644444433321 11 123456677778888899999999999999999999987653 55777777
Q ss_pred hhccCCChHHHHHHHHHHHHHhhhcChH
Q 009632 482 EMINNPHYLYRMTILRAISLLAPVMGSE 509 (530)
Q Consensus 482 ~~~~d~~~~vr~~a~~~l~~i~~~~~~~ 509 (530)
++++..+..||..++..+..+...++.+
T Consensus 92 ~l~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (140)
T 3ldz_A 92 NVLNKGHPKVCEKLKALMVEWTDEFKND 119 (140)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHhccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 7776778899999999999998877654
No 125
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=92.81 E-value=2.8 Score=32.88 Aligned_cols=117 Identities=7% Similarity=-0.007 Sum_probs=77.4
Q ss_pred hcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHh----hhhHHHHH
Q 009632 406 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM----QHITPQVL 481 (530)
Q Consensus 406 ~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~----~~i~~~l~ 481 (530)
..+++|..-...+..+..= + .-....+..+.+-+..+++.|...|+..+..+++++|..+.. ..++..|.
T Consensus 14 l~~~dw~~~leicD~I~~~----~--~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~ 87 (148)
T 1mhq_A 14 MSEQDWSAIQNFCEQVNTD----P--NGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELI 87 (148)
T ss_dssp CSSCCHHHHHHHHHHHHHS----S--HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHcC----C--ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHH
Confidence 3456786544444444321 1 113345667777788999999999999999999999987643 66788888
Q ss_pred hhccC------CChHHHHHHHHHHHHHhhhcChHHHHhhHHHHHHh-hccCCCC
Q 009632 482 EMINN------PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVIN-ASKDRYL 528 (530)
Q Consensus 482 ~~~~d------~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~p~l~~-~l~D~~~ 528 (530)
+++.+ .+..||..++..+..+...++...-....+..|.. ....|-|
T Consensus 88 kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~p~i~~~y~~Lk~~G~~Fp~~ 141 (148)
T 1mhq_A 88 KVLSPKYLGSWATGKVKGRVIEILFSWTVWFPEDIKIRDAYQMLKKQGIIKQDP 141 (148)
T ss_dssp HTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSCSCC
T ss_pred HHHccccCCCCCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHcCCCCCCC
Confidence 87764 36789999999999998887654333344443333 3333333
No 126
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=92.19 E-value=5.1 Score=34.35 Aligned_cols=159 Identities=9% Similarity=-0.059 Sum_probs=90.5
Q ss_pred HHHHHHhcCCccchhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcCCCChhHHHHHH-HHHHHHHhhhcchhhHHHHHHH
Q 009632 128 PLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA-SNLGKFAATVEPAHLKTDIMSI 206 (530)
Q Consensus 128 ~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~-~~l~~l~~~~~~~~~~~~l~~~ 206 (530)
.++..+-+++....|..|+..+....+...++..+.+-..+ . ..++|.+-...+ ..++.+...-+. ...+.
T Consensus 64 ~~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~~l~~~~~~l-~--~~~nWd~~D~~a~~~~g~~~~~~p~-----~~~~~ 135 (232)
T 3jxy_A 64 IIIRELWDLPEREFQAAALDIMQKYKKHINETHIPFLEELI-V--TKSWWDSVDSIVPTFLGDIFLKHPE-----LISAY 135 (232)
T ss_dssp HHHHHHHTSSBHHHHHHHHHHHHHTGGGCCGGGHHHHHHHH-T--SSCCHHHHHHHTTTHHHHHHHHCGG-----GGGGT
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH-c--cCCChHHHHHhhHHHHHHHHHHCHH-----HHHHH
Confidence 34555556666667777777776554444444333332222 1 356787766553 455666554211 24456
Q ss_pred HHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHH
Q 009632 207 FEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYV 286 (530)
Q Consensus 207 l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~ 286 (530)
+...+.|++.-+|..|+..+-.. . .......+++.+...+.|++.-|+.+++..|..++.. ..+.+.+++.
T Consensus 136 l~~W~~s~~~w~rR~ai~~~l~~---~-~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~-----~p~~v~~fl~ 206 (232)
T 3jxy_A 136 IPKWIASDNIWLQRAAILFQLKY---K-QKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKT-----NPDVVWEYVQ 206 (232)
T ss_dssp HHHHHHSSCHHHHHHHHHTTTTC---G-GGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTT-----CHHHHHHHHH
T ss_pred HHHHhcCCchHHHHHHHHHHHHH---H-hCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh-----CHHHHHHHHH
Confidence 66788888888887777654221 1 1112334667777788888888999888888877643 1233444444
Q ss_pred HhcCCCcHHHHHHHHHHHH
Q 009632 287 RLLRDNEAEVRIAAAGKVT 305 (530)
Q Consensus 287 ~~l~d~~~~vr~~a~~~l~ 305 (530)
+. .-++..+..|++.|+
T Consensus 207 ~~--~l~~~~~r~A~k~l~ 223 (232)
T 3jxy_A 207 NN--ELAPLSKREAIKHIK 223 (232)
T ss_dssp HS--CCCHHHHHHHTTTTH
T ss_pred HC--CCCHHHHHHHHHhcc
Confidence 43 333445555555443
No 127
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=91.75 E-value=3.2 Score=33.52 Aligned_cols=109 Identities=7% Similarity=0.009 Sum_probs=73.8
Q ss_pred cCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHh----hhhHHHHHh
Q 009632 407 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM----QHITPQVLE 482 (530)
Q Consensus 407 ~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~----~~i~~~l~~ 482 (530)
.+++|..-...+..+..= . .-....+..+.+-+..+++.|...|+..+-.+++++|..+.. ..++..|.+
T Consensus 27 ~~~Dw~~ileicD~I~~~----~--~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~k 100 (171)
T 1juq_A 27 RQEDWEYIIGFCDQINKE----L--EGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIK 100 (171)
T ss_dssp SSCCHHHHHHHHHHHHHS----T--THHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHcC----C--ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHH
Confidence 346786544444444321 1 113345667777788899999999999999999998876543 566777777
Q ss_pred hccC------CChHHHHHHHHHHHHHhhhcChHHHHhhHHHHHHh
Q 009632 483 MINN------PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVIN 521 (530)
Q Consensus 483 ~~~d------~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~p~l~~ 521 (530)
++.. .+..||..++..+..+...++........+..|+.
T Consensus 101 l~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~~~i~~~y~~Lk~ 145 (171)
T 1juq_A 101 VVSPKYLGDRVSEKVKTKVIELLYSWTMALPEEAKIKDAYHMLKR 145 (171)
T ss_dssp HHCCCCCCTTSCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HhccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 7652 36789999999999998888755434444444443
No 128
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=91.72 E-value=2.7 Score=33.62 Aligned_cols=97 Identities=12% Similarity=0.104 Sum_probs=69.1
Q ss_pred cCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHh----hhhHHHHHh
Q 009632 407 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM----QHITPQVLE 482 (530)
Q Consensus 407 ~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~----~~i~~~l~~ 482 (530)
.+++|..-...+..+..= . .-....+..+.+-+..+++.|...|+..+..+++++|..+.. ..++..+.+
T Consensus 29 ~~~Dw~~~leicD~I~~~-----~-~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~ 102 (163)
T 1x5b_A 29 TTEDWSLIMDICDKVGST-----P-NGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRA 102 (163)
T ss_dssp SSCCHHHHHHHHHHHHHS-----S-SHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHhCC-----C-ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHH
Confidence 456787555444444321 1 113345667777788899999999999999999999987542 556777777
Q ss_pred hccC-CChHHHHHHHHHHHHHhhhcChH
Q 009632 483 MINN-PHYLYRMTILRAISLLAPVMGSE 509 (530)
Q Consensus 483 ~~~d-~~~~vr~~a~~~l~~i~~~~~~~ 509 (530)
++.. .+..||..++..+..+...++.+
T Consensus 103 l~~~~~~~~Vk~kil~li~~W~~~f~~~ 130 (163)
T 1x5b_A 103 VIKNKAHPKVCEKLKSLMVEWSEEFQKD 130 (163)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHccCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 6654 57789999999999998877654
No 129
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=90.94 E-value=8.7 Score=34.58 Aligned_cols=207 Identities=9% Similarity=0.046 Sum_probs=125.1
Q ss_pred hhhhHhHhHhccCCcHHHHHHHHHHHHhhccc-cCH----HHH---HHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhhh
Q 009632 318 QHILPCVKELSSDSSQHVRSALASVIMGMAPL-LGK----DAT---IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI 389 (530)
Q Consensus 318 ~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~-~~~----~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 389 (530)
+.++..+...+..-++..|..+...+..+... .|. -.+ .+.++..+...-.+++... .+..-|...++.-
T Consensus 77 ~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl--~~G~mLRecir~e 154 (341)
T 1upk_A 77 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIAL--NCGIMLRECIRHE 154 (341)
T ss_dssp HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHH--HHHHHHHHHHTSH
T ss_pred hCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHh--HHHHHHHHHHHhH
Confidence 34455555555666777777777776665432 221 111 2345555555555443221 1111121211110
Q ss_pred c--hhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhC---hhhH---HHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 009632 390 G--IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFF---DDKLGALCMQWLQDKVYSIRDAAANNLK 461 (530)
Q Consensus 390 ~--~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~---~~~~---~~~~~~~l~~~l~d~~~~Vr~~a~~~l~ 461 (530)
. .--+....+..+.++...++..+-..|..++..+..... .+++ .+.++..+-+++..++.-.|..+++.||
T Consensus 155 ~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLg 234 (341)
T 1upk_A 155 PLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLG 234 (341)
T ss_dssp HHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHH
Confidence 0 000112233456678889999999999888887765422 2232 2457777888999999999999999999
Q ss_pred HHHHHhChhHH------hhhhHHHHHhhccCCChHHHHHHHHHHHHHhhhcC-hHHH-------HhhHHHHHHhhccCC
Q 009632 462 RLAEEFGPEWA------MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG-SEIT-------CSRLLPVVINASKDR 526 (530)
Q Consensus 462 ~l~~~~~~~~~------~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~~~-~~~~-------~~~~~p~l~~~l~D~ 526 (530)
.+.-.-.+..+ ..+-+..++++++|++..++..|...+.-++-+-. +..+ .+.++.++..+..|+
T Consensus 235 elLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f~~d~ 313 (341)
T 1upk_A 235 ELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKFQNDR 313 (341)
T ss_dssp HHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHTTTTC
T ss_pred HHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 99854222111 14457788899999999999999999987764321 1111 566777888887776
No 130
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=90.92 E-value=3.4 Score=32.05 Aligned_cols=108 Identities=8% Similarity=-0.044 Sum_probs=68.2
Q ss_pred cCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhh----hhccHHHHH
Q 009632 172 CQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDC----VAHILPVIV 247 (530)
Q Consensus 172 ~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~~~~l~ 247 (530)
+.+++|..-...|..+.. . +.-..+.+..+.+.+.+.++.+...|+..+..+.+.+|+.-. ...++..+.
T Consensus 18 l~~~dw~~ileicD~I~~-----~-~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~ 91 (140)
T 3ldz_A 18 NTAEDWGLILDICDKVGQ-----S-RTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVS 91 (140)
T ss_dssp SSSCCHHHHHHHHHHHTT-----S-TTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHC-----C-CcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHH
Confidence 345666544444433321 1 122345677788888888999999999999999999887311 123444444
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHH
Q 009632 248 NFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAY 285 (530)
Q Consensus 248 ~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l 285 (530)
.+++..++.||..+...+...+..++.+.....+...+
T Consensus 92 ~l~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~Y 129 (140)
T 3ldz_A 92 NVLNKGHPKVCEKLKALMVEWTDEFKNDPQLSLISAMI 129 (140)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHTTCGGGTHHHHHH
T ss_pred HHhccCCHHHHHHHHHHHHHHHHHhCCCCCchHHHHHH
Confidence 45545677888888888888887776654433333333
No 131
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=89.91 E-value=7.9 Score=32.80 Aligned_cols=131 Identities=8% Similarity=-0.004 Sum_probs=66.1
Q ss_pred HHHHHhhcCCChHHHHHHHHhhHHhhhhhchhHHHhhHHHHHHHHhc-CCChHHHHHHHHHHHHHHhhhChhhHHHHHHH
Q 009632 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGA 439 (530)
Q Consensus 361 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~-~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~ 439 (530)
.++..+...+..+.|..++..++.....+.. ..++.+..++. ..+|.+--..+.+++.+..... ..+.+
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~~-----~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~-----~~~~~ 127 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQRFSL-----EEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHL-----TELPT 127 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGGCCH-----HHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSG-----GGHHH
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhhCCH-----HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHCh-----HHHHH
Confidence 3344445555666666666666554332221 22233333333 3456555544443444432211 12345
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhhhHHHHHhhccCCChHHHHHHHHHHHHHhhh
Q 009632 440 LCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPV 505 (530)
Q Consensus 440 ~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~ 505 (530)
.+.....|++..+|..|+.++- .. ......+.+++.+..+..|+++-||.+..++|..+...
T Consensus 128 ~i~~W~~s~~~w~rR~ai~~~l---~~-~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~ 189 (220)
T 2b6c_A 128 IFALFYGAENFWNRRVALNLQL---ML-KEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKT 189 (220)
T ss_dssp HHHHHTTCSSHHHHHHHHHTTT---TC-GGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHcCCCHHHHHHHHHHHH---HH-HHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhh
Confidence 5666667767666666666431 11 11112244555555566777777777777777776654
No 132
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=89.78 E-value=7.1 Score=33.42 Aligned_cols=131 Identities=11% Similarity=0.094 Sum_probs=71.4
Q ss_pred HHHHHhhcCCchhHHHHHHHHHHHHhhhcCchhhhhccHHHHHHhcC-CCCHHHHHHHH-HHHHHHHHHhCCcccccchH
Q 009632 205 SIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQ-DKSWRVRYMVA-NQLYELCEAVGPEPTRMDLV 282 (530)
Q Consensus 205 ~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~-d~~~~vr~~~~-~~l~~l~~~~~~~~~~~~l~ 282 (530)
..+.++..++..+.|-.|+..+....+.+.++ .++.+..++. .++|.+-...+ ..++.+.... ...+.
T Consensus 64 ~~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~-----~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~-----p~~~~ 133 (232)
T 3jxy_A 64 IIIRELWDLPEREFQAAALDIMQKYKKHINET-----HIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKH-----PELIS 133 (232)
T ss_dssp HHHHHHHTSSBHHHHHHHHHHHHHTGGGCCGG-----GHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHC-----GGGGG
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHhCCHH-----HHHHHHHHHccCCChHHHHHhhHHHHHHHHHHC-----HHHHH
Confidence 34555666666778888887776544433332 2333444433 46677766553 4445554431 12244
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhccc
Q 009632 283 PAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL 349 (530)
Q Consensus 283 ~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~ 349 (530)
+.+.....+++.-+|..|+..+-........ ..+.+.+...+.|++..|+.++...+..++..
T Consensus 134 ~~l~~W~~s~~~w~rR~ai~~~l~~~~~~d~----~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~ 196 (232)
T 3jxy_A 134 AYIPKWIASDNIWLQRAAILFQLKYKQKMDE----ELLFWIIGQLHSSKEFFIQKAIGWVLREYAKT 196 (232)
T ss_dssp GTHHHHHHSSCHHHHHHHHHTTTTCGGGCCH----HHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHhCCCH----HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Confidence 5566666666666666665543221111111 23445555666777777777777777776654
No 133
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=88.78 E-value=5.7 Score=33.83 Aligned_cols=97 Identities=14% Similarity=0.132 Sum_probs=66.6
Q ss_pred cCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHh----hhhHHHHHh
Q 009632 407 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM----QHITPQVLE 482 (530)
Q Consensus 407 ~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~----~~i~~~l~~ 482 (530)
.+++|..-...+..+.. ...| ....+..+.+-+..+++.|...|+..|..++++.|..+.. .+++..|.+
T Consensus 22 ~~~dw~~ileicD~I~~--~~~~----~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~ 95 (226)
T 3zyq_A 22 LETDWESILQICDLIRQ--GDTQ----AKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKD 95 (226)
T ss_dssp SSCCHHHHHHHHHHHHT--TSSC----HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHhC--CCcc----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHH
Confidence 44577754444444431 1112 2445667777788899999999999999999998876543 455666666
Q ss_pred hcc-CCChHHHHHHHHHHHHHhhhcChH
Q 009632 483 MIN-NPHYLYRMTILRAISLLAPVMGSE 509 (530)
Q Consensus 483 ~~~-d~~~~vr~~a~~~l~~i~~~~~~~ 509 (530)
+++ ..+..||..++..+..+...+..+
T Consensus 96 l~~~~~~~~Vk~kil~li~~W~~~f~~~ 123 (226)
T 3zyq_A 96 LLKRQVEVNVRNKILYLIQAWAHAFRNE 123 (226)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred HhccCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 554 357789999999999888877543
No 134
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=87.87 E-value=6.4 Score=31.46 Aligned_cols=70 Identities=11% Similarity=0.062 Sum_probs=36.9
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhh----HHHHHHHHHHhhcC-CchhHHHHHHHHHHHHhhhcC
Q 009632 165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHL----KTDIMSIFEDLTQD-DQDSVRLLAVEGCAALGKLLE 234 (530)
Q Consensus 165 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~----~~~l~~~l~~~~~d-~~~~vr~~a~~~l~~l~~~~~ 234 (530)
...+.+-+...++.+...|+..|..+.+++|.... ...+++.+..++.. .++.||..+++.+...+..++
T Consensus 54 ~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~ 128 (163)
T 1x5b_A 54 LKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQ 128 (163)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhc
Confidence 33444444556677777777777777776665221 12344444444433 334566666555555554443
No 135
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=87.81 E-value=9.2 Score=32.86 Aligned_cols=128 Identities=12% Similarity=0.087 Sum_probs=74.6
Q ss_pred HHHHHHHHHhhhcCc------hhhhhccHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHhCCccc----ccchHHHHHHhc
Q 009632 221 LAVEGCAALGKLLEP------QDCVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVGPEPT----RMDLVPAYVRLL 289 (530)
Q Consensus 221 ~a~~~l~~l~~~~~~------~~~~~~~~~~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~~~~----~~~l~~~l~~~l 289 (530)
.|+..+-.++.+-.- ..+.-++.|++....++. .+..|-+....+|.+.+.-..+.. ...++|.+++.+
T Consensus 75 naLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrim 154 (268)
T 2fv2_A 75 NALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIM 154 (268)
T ss_dssp HHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHH
Confidence 344455555543221 223455777776666653 367898888888888765222221 346899999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHhh-CHH----------HHHhhhhHhHhHhccCCcHHHHHHHHHHHHhhcc
Q 009632 290 RDNEAEVRIAAAGKVTKFCRIL-NPE----------LAIQHILPCVKELSSDSSQHVRSALASVIMGMAP 348 (530)
Q Consensus 290 ~d~~~~vr~~a~~~l~~~~~~~-~~~----------~~~~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~ 348 (530)
+-.+.-.+.-|..-+..+...- |-+ .+...+-..+..+.++++.|.-..++++...++.
T Consensus 155 e~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsd 224 (268)
T 2fv2_A 155 ESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSD 224 (268)
T ss_dssp HHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT
T ss_pred hhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence 8887777777777666665321 111 1112222333445566666766666666666654
No 136
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=87.49 E-value=8.9 Score=30.04 Aligned_cols=74 Identities=5% Similarity=-0.012 Sum_probs=59.4
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHH----HHHHHHHHHHhcC------CcHHHHHHHHHHHHHHHH
Q 009632 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD----DKLGALCMQWLQD------KVYSIRDAAANNLKRLAE 465 (530)
Q Consensus 396 ~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~----~~~~~~l~~~l~d------~~~~Vr~~a~~~l~~l~~ 465 (530)
+..+..+.+.++++++.+...|+..+..+.+.+|..|.. ..++.-+.+++.+ ....||...+..+..-..
T Consensus 47 k~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 47 PLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 456667777778999999999999999999999977643 4577777777765 467899999999988887
Q ss_pred HhCh
Q 009632 466 EFGP 469 (530)
Q Consensus 466 ~~~~ 469 (530)
.++.
T Consensus 127 ~f~~ 130 (149)
T 3g2s_A 127 GLPE 130 (149)
T ss_dssp HCTT
T ss_pred HhCC
Confidence 7753
No 137
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=86.44 E-value=22 Score=33.60 Aligned_cols=250 Identities=11% Similarity=0.105 Sum_probs=137.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHH--hCC----cccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhh-CHH-HHHhhhhH
Q 009632 251 QDKSWRVRYMVANQLYELCEA--VGP----EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL-NPE-LAIQHILP 322 (530)
Q Consensus 251 ~d~~~~vr~~~~~~l~~l~~~--~~~----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~-~~~-~~~~~l~~ 322 (530)
.+.+|..-..+.+.+-.+... +.. ......++-.++.++..+++.-|......+..+...+ +.. .+...+-.
T Consensus 127 ~e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~n 206 (449)
T 2npp_B 127 LEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINN 206 (449)
T ss_dssp CCTTHHHHHHHHHHHHHHHTSTTCCSTTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466888888888887776643 221 2223457778888889998888888888887776543 222 11122222
Q ss_pred hHhHhccC-CcHHHHHHHHHHHHhhccccC---HHHHHHhHHHHHHHhhcCCChHHH-HHHHHhhHHhhhhhchhHHHhh
Q 009632 323 CVKELSSD-SSQHVRSALASVIMGMAPLLG---KDATIEQLLPIFLSLLKDEFPDVR-LNIISKLDQVNQVIGIDLLSQS 397 (530)
Q Consensus 323 ~l~~~~~d-~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr-~~a~~~l~~l~~~~~~~~~~~~ 397 (530)
.+..++.. ....--..+++.++.+...+. ++.....+...++.+.+......= .+...++..+++. ...+...
T Consensus 207 if~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eK--Dp~L~~~ 284 (449)
T 2npp_B 207 IFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEK--DSTLTEP 284 (449)
T ss_dssp HHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHH--CGGGHHH
T ss_pred HHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhc--CcHhHHH
Confidence 22222221 111122355666666665543 233344444555555554432211 1111222222211 1112233
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHH---HHHHHHHHhcCCcHHHHHHHHHHHHH--HHHHhChhHH
Q 009632 398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDK---LGALCMQWLQDKVYSIRDAAANNLKR--LAEEFGPEWA 472 (530)
Q Consensus 398 l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~---~~~~l~~~l~d~~~~Vr~~a~~~l~~--l~~~~~~~~~ 472 (530)
++..+.+.=-..+..--...+.-+..+....++..|... ++..+-+++..++.+|-+.|+..+.. +...+...
T Consensus 285 vi~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~li~~n-- 362 (449)
T 2npp_B 285 VVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDN-- 362 (449)
T ss_dssp HHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTT--
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHHHHhc--
Confidence 444444433334444556677778888888888777654 45556677889999999999987732 22222111
Q ss_pred hhhhHHHHHhhc-----cCCChHHHHHHHHHHHHHhh
Q 009632 473 MQHITPQVLEMI-----NNPHYLYRMTILRAISLLAP 504 (530)
Q Consensus 473 ~~~i~~~l~~~~-----~d~~~~vr~~a~~~l~~i~~ 504 (530)
...++|.+...+ ++=|..+|..+..++..+.+
T Consensus 363 ~~~IlPii~p~L~~~s~~HWn~~V~~la~~vlk~l~e 399 (449)
T 2npp_B 363 AAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFME 399 (449)
T ss_dssp HHHHHHHHHHHHTSCTTCCSSTTHHHHHHHHHHHHHT
T ss_pred hhhhHHhhHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 234566655533 22366799999999986655
No 138
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=84.27 E-value=12 Score=31.87 Aligned_cols=98 Identities=11% Similarity=0.033 Sum_probs=61.0
Q ss_pred CCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCchh----hhhccHHHHHH
Q 009632 173 QDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD----CVAHILPVIVN 248 (530)
Q Consensus 173 ~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~~~~~l~~ 248 (530)
.+++|..-...+..+.. . +.-..+.+..+.+.+.+.++.+...|+..|..+.+..|+.- -...++..+..
T Consensus 22 ~~~dw~~ileicD~I~~-----~-~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~ 95 (226)
T 3zyq_A 22 LETDWESILQICDLIRQ-----G-DTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKD 95 (226)
T ss_dssp SSCCHHHHHHHHHHHHT-----T-SSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHhC-----C-CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHH
Confidence 35566554444444321 1 11234567777778888888899999999999888887621 12223344444
Q ss_pred hcC-CCCHHHHHHHHHHHHHHHHHhCCcc
Q 009632 249 FSQ-DKSWRVRYMVANQLYELCEAVGPEP 276 (530)
Q Consensus 249 ~~~-d~~~~vr~~~~~~l~~l~~~~~~~~ 276 (530)
+++ ..+..||..+...+...+..+..+.
T Consensus 96 l~~~~~~~~Vk~kil~li~~W~~~f~~~~ 124 (226)
T 3zyq_A 96 LLKRQVEVNVRNKILYLIQAWAHAFRNEP 124 (226)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHTTTCG
T ss_pred HhccCCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 433 3457788888888888887776544
No 139
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=84.02 E-value=9.3 Score=30.27 Aligned_cols=61 Identities=7% Similarity=0.083 Sum_probs=40.7
Q ss_pred CCccchhHHHHhHhhhhcCCCChHHH-----HHHHHH-HHhhcC---CCChhHHHHHHHHHHHHHhhhcc
Q 009632 136 GEWFTARVSACGLFHIAYPSAPDILK-----TELRSI-YTQLCQ---DDMPMVRRSAASNLGKFAATVEP 196 (530)
Q Consensus 136 ~~~~~~r~~~~~~l~~l~~~~~~~~~-----~~l~~~-l~~l~~---d~~~~vR~~a~~~l~~l~~~~~~ 196 (530)
..++.++..|..++..+.+.+++... .++++. +..++. ++...||..++..+...+..++.
T Consensus 65 ~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f~~ 134 (157)
T 1elk_A 65 NKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADAFRS 134 (157)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHcCC
Confidence 45667777788888888877776522 334444 445443 34457888888888888877654
No 140
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=83.94 E-value=12 Score=28.41 Aligned_cols=94 Identities=9% Similarity=0.029 Sum_probs=55.7
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHhhh
Q 009632 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQH 475 (530)
Q Consensus 396 ~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~ 475 (530)
..++|.|...++|.||.+...++..+... .+.++|.+.+.+...+..=. ..++..+...+..+ ....
T Consensus 30 ~p~lp~LL~WLQD~NWPvA~~i~~~L~~~---------~~~l~p~I~~vl~s~D~~W~---ywil~~lv~~~~~~-~~~~ 96 (134)
T 3ut4_A 30 EPIIFDLLKWLQDYNWPIAKDILPVVVLH---------QSIAMPHILTILQGNDIMWK---YWVIKLMIPYLIYP-NKQL 96 (134)
T ss_dssp HHHHHHHHGGGSCTTSTTHHHHHHHHHHT---------HHHHHHHHHHHHHSSCHHHH---HHHHHHHGGGCCHH-HHHH
T ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHc---------cHhhHHHHHHHHHcCChHHH---HHHHHHHHHcCCHH-HHHH
Confidence 46788888888888888777776666543 23466666666654443322 23333344444332 2355
Q ss_pred hHHHHHhhccCC-----ChHHHHHHHHHHHHH
Q 009632 476 ITPQVLEMINNP-----HYLYRMTILRAISLL 502 (530)
Q Consensus 476 i~~~l~~~~~d~-----~~~vr~~a~~~l~~i 502 (530)
+.+.+.++...+ ...+...|-+.+.++
T Consensus 97 l~~eL~rl~~~pt~~E~~eev~e~A~~iL~~~ 128 (134)
T 3ut4_A 97 VKSELERLSSLEIINEDIREIVNLSKDYLHFY 128 (134)
T ss_dssp HHHHHHHHHTCCCSSGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHHHHH
Confidence 677777766554 445666666666554
No 141
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=83.21 E-value=12 Score=28.48 Aligned_cols=100 Identities=8% Similarity=-0.132 Sum_probs=63.4
Q ss_pred CCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcC
Q 009632 155 SAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLE 234 (530)
Q Consensus 155 ~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~ 234 (530)
.++.+....++|.++..++|.+|.+...++..|..+. +.++|.+.+.+..+++.-+-. .+..+...++
T Consensus 23 ~~~~~~i~p~lp~LL~WLQD~NWPvA~~i~~~L~~~~---------~~l~p~I~~vl~s~D~~W~yw---il~~lv~~~~ 90 (134)
T 3ut4_A 23 KLIDNEIEPIIFDLLKWLQDYNWPIAKDILPVVVLHQ---------SIAMPHILTILQGNDIMWKYW---VIKLMIPYLI 90 (134)
T ss_dssp TCCHHHHHHHHHHHHGGGSCTTSTTHHHHHHHHHHTH---------HHHHHHHHHHHHSSCHHHHHH---HHHHHGGGCC
T ss_pred hCCHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHcc---------HhhHHHHHHHHHcCChHHHHH---HHHHHHHcCC
Confidence 3466678889999999999999999999888887653 356666666666555443332 3444455555
Q ss_pred chhhhhccHHHHHHhcCCC-----CHHHHHHHHHHHHH
Q 009632 235 PQDCVAHILPVIVNFSQDK-----SWRVRYMVANQLYE 267 (530)
Q Consensus 235 ~~~~~~~~~~~l~~~~~d~-----~~~vr~~~~~~l~~ 267 (530)
.+ ....+.|.+.+++..+ .+.|...|-+.|..
T Consensus 91 ~~-~~~~l~~eL~rl~~~pt~~E~~eev~e~A~~iL~~ 127 (134)
T 3ut4_A 91 YP-NKQLVKSELERLSSLEIINEDIREIVNLSKDYLHF 127 (134)
T ss_dssp HH-HHHHHHHHHHHHHTCCCSSGGGHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHH
Confidence 43 3445667777766543 34455544444443
No 142
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=82.82 E-value=9.8 Score=29.32 Aligned_cols=101 Identities=14% Similarity=0.075 Sum_probs=61.3
Q ss_pred HHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHh-----hhhH
Q 009632 403 VELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM-----QHIT 477 (530)
Q Consensus 403 ~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~-----~~i~ 477 (530)
.+..++.+|..=...+.-|..+..... ..+...+++++.+-++++.+.|...|+++|..++...++.+.. ..++
T Consensus 17 ~~ATs~d~~~~pgylm~EIA~~T~~s~-~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~I 95 (140)
T 1vdy_A 17 DAVTSDEDKVAPVYKLEEICDLLRSSH-VSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAV 95 (140)
T ss_dssp HHTTCSCSSCCCHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHH
T ss_pred HHHhcCCCCCCcHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHH
Confidence 344555556544444444444432222 2234679999999999999999999999999988765544332 1222
Q ss_pred HHHHhhc--cC------CChHHHHHHHHHHHHHhh
Q 009632 478 PQVLEMI--NN------PHYLYRMTILRAISLLAP 504 (530)
Q Consensus 478 ~~l~~~~--~d------~~~~vr~~a~~~l~~i~~ 504 (530)
..+.++- .| +...||..|-+++.-+..
T Consensus 96 k~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~d 130 (140)
T 1vdy_A 96 RNLFHYKGHPDPLKGDALNKAVRETAHETISAIFS 130 (140)
T ss_dssp HTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHhcCCCCCcccccchhHHHHHHHHHHHHHHhC
Confidence 2232221 12 235799999888876643
No 143
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=82.51 E-value=31 Score=32.05 Aligned_cols=253 Identities=10% Similarity=0.078 Sum_probs=135.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHh------CCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH-HH-HHhhhhH
Q 009632 251 QDKSWRVRYMVANQLYELCEAV------GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP-EL-AIQHILP 322 (530)
Q Consensus 251 ~d~~~~vr~~~~~~l~~l~~~~------~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~-~~-~~~~l~~ 322 (530)
.+.+|..-..+.+.+-.+...- .+......++-.++.++..+++.=|...-..+..+...+.. .. +...+-.
T Consensus 94 ~e~sWpHLqlVYe~llrfi~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~inn 173 (403)
T 3fga_B 94 LEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINN 173 (403)
T ss_dssp CCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred cccCcHHHHHHHHHHHHHHhccccChhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 4678888888888887776541 12223345777788899999999998888888876654322 11 1112222
Q ss_pred hHhHhccCCc-HHHHHHHHHHHHhhccccC---HHHHHHhHHHHHHHhhcCCChHHH-HHHHHhhHHhhhhhchhHHHhh
Q 009632 323 CVKELSSDSS-QHVRSALASVIMGMAPLLG---KDATIEQLLPIFLSLLKDEFPDVR-LNIISKLDQVNQVIGIDLLSQS 397 (530)
Q Consensus 323 ~l~~~~~d~~-~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr-~~a~~~l~~l~~~~~~~~~~~~ 397 (530)
.+..++.... ..--..+++.++.+...+. ++.....+...++.+-+.+...+= .+...++..+++. ...+...
T Consensus 174 if~~fiye~e~~~GIaeLLeilgsIinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eK--Dp~L~~~ 251 (403)
T 3fga_B 174 IFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEK--DSTLTEP 251 (403)
T ss_dssp HHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHH--CGGGHHH
T ss_pred HHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHh--CchhHHH
Confidence 2222222111 1112345566666655442 133333344445555544432211 1112222222211 1112233
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHH---HHHHHHHHhcCCcHHHHHHHHHHHHH--HHHHhCh--h
Q 009632 398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDK---LGALCMQWLQDKVYSIRDAAANNLKR--LAEEFGP--E 470 (530)
Q Consensus 398 l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~---~~~~l~~~l~d~~~~Vr~~a~~~l~~--l~~~~~~--~ 470 (530)
++..+.+.=-..+..--...+.-+..+....++..|... ++..+-.++.+++.+|-+.|+..+.. +...+.. .
T Consensus 252 vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~~ 331 (403)
T 3fga_B 252 VVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAA 331 (403)
T ss_dssp HHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHH
T ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHhHH
Confidence 444444433334555556677778888888887777654 44455667789999999999887632 1222111 1
Q ss_pred HHhhhhHHHHHhhcc-CCChHHHHHHHHHHHHHhhh
Q 009632 471 WAMQHITPQVLEMIN-NPHYLYRMTILRAISLLAPV 505 (530)
Q Consensus 471 ~~~~~i~~~l~~~~~-d~~~~vr~~a~~~l~~i~~~ 505 (530)
.....+.|.+.+... +=|..+|..+..++..+.+.
T Consensus 332 ~IlPii~p~L~~~~~~HWn~~v~~l~~~vlk~l~e~ 367 (403)
T 3fga_B 332 KILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEM 367 (403)
T ss_dssp HHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Confidence 112334444444332 33778999998888877553
No 144
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=81.56 E-value=19 Score=28.94 Aligned_cols=74 Identities=7% Similarity=0.003 Sum_probs=58.2
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHH----HHHHHHHHHHhcC------CcHHHHHHHHHHHHHHHH
Q 009632 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD----DKLGALCMQWLQD------KVYSIRDAAANNLKRLAE 465 (530)
Q Consensus 396 ~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~----~~~~~~l~~~l~d------~~~~Vr~~a~~~l~~l~~ 465 (530)
+..+..+.+.+++++..+...|+..+..+.+.+|..+.. ..++.-+.+++.. ....||..++..+..-..
T Consensus 49 k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 49 QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 455667777788999999999999999999998876643 4566677777753 357899999999988887
Q ss_pred HhCh
Q 009632 466 EFGP 469 (530)
Q Consensus 466 ~~~~ 469 (530)
.++.
T Consensus 129 ~f~~ 132 (171)
T 1juq_A 129 ALPE 132 (171)
T ss_dssp HCTT
T ss_pred HcCC
Confidence 7754
No 145
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=79.94 E-value=20 Score=28.27 Aligned_cols=96 Identities=16% Similarity=0.173 Sum_probs=65.6
Q ss_pred cCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHHhChhHHh----hhhHHH-H
Q 009632 407 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGPEWAM----QHITPQ-V 480 (530)
Q Consensus 407 ~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~-d~~~~Vr~~a~~~l~~l~~~~~~~~~~----~~i~~~-l 480 (530)
.+++|..-...+..+.. +. .-....+..+.+-++ .+++.|...|+..+..+++++|..+.. ..++.. +
T Consensus 30 ~~~Dw~~~leicD~I~~-----~~-~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~L 103 (157)
T 1elk_A 30 QSEDWALNMEICDIINE-----TE-EGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVL 103 (157)
T ss_dssp SSCCHHHHHHHHHHHHH-----SS-SHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHT
T ss_pred CCcCHHHHHHHHHHHhC-----CC-ccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHH
Confidence 34678765554444432 11 123345666777776 578899999999999999999987643 456666 5
Q ss_pred Hhhcc---CCChHHHHHHHHHHHHHhhhcCh
Q 009632 481 LEMIN---NPHYLYRMTILRAISLLAPVMGS 508 (530)
Q Consensus 481 ~~~~~---d~~~~vr~~a~~~l~~i~~~~~~ 508 (530)
.+++. ++...||..++..+..+...++.
T Consensus 104 vk~~~~k~~~~~~Vk~kil~li~~W~~~f~~ 134 (157)
T 1elk_A 104 VRTILPKNNPPTIVHDKVLNLIQSWADAFRS 134 (157)
T ss_dssp HHHHSTTTCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhccCCCCcHHHHHHHHHHHHHHHHHcCC
Confidence 66653 34568999999999999887754
No 146
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=78.71 E-value=17 Score=30.68 Aligned_cols=96 Identities=14% Similarity=0.090 Sum_probs=64.6
Q ss_pred cCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHh----hhhHHHHHh
Q 009632 407 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM----QHITPQVLE 482 (530)
Q Consensus 407 ~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~----~~i~~~l~~ 482 (530)
.+++|..-...+..+.. ...+ ....+..+.+-+..+++.|...|+..|..++.+.|..+.. ..++..+.+
T Consensus 19 ~~~dw~~~leicd~i~~--~~~~----~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~ 92 (220)
T 1dvp_A 19 LEPDWPSILLICDEINQ--KDVT----PKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSS 92 (220)
T ss_dssp SSCCHHHHHHHHHHHHT--TSSC----HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHH
T ss_pred CCcCHHHHHHHHHhhcC--CCcC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHH
Confidence 45677754444433321 1112 2345556777778889999999999999999888876532 456666666
Q ss_pred hcc-CCChHHHHHHHHHHHHHhhhcCh
Q 009632 483 MIN-NPHYLYRMTILRAISLLAPVMGS 508 (530)
Q Consensus 483 ~~~-d~~~~vr~~a~~~l~~i~~~~~~ 508 (530)
++. .++..||..+++.+..+...++.
T Consensus 93 l~~~~~~~~Vk~kil~li~~W~~~f~~ 119 (220)
T 1dvp_A 93 FLESTPHENVRQKMLELVQTWAYAFRS 119 (220)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHHHHTTT
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 654 45778999999988888877653
No 147
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=77.99 E-value=33 Score=29.53 Aligned_cols=69 Identities=14% Similarity=0.112 Sum_probs=50.5
Q ss_pred hhcchhHHHhhhccc-chHHHHHHHHHHHHHHhhcChhhh----hhhHHHHHHHHhcCCccchhHHHHhHhhhh
Q 009632 84 AHVLLPPLETLCTVE-ETCVRDKAVESLCRIGSQMRESDL----VDWYIPLVKRLAAGEWFTARVSACGLFHIA 152 (530)
Q Consensus 84 ~~~l~~~l~~l~~d~-~~~vR~~a~~~l~~l~~~~~~~~~----~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l 152 (530)
.-++.|+|....++. -...|-.++..++.+++.-.++.+ ...++|++.+.++..+.-.+..|..++..+
T Consensus 99 plyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKI 172 (268)
T 2fv2_A 99 PLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI 172 (268)
T ss_dssp GGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 456778877666554 577999999999999988555433 345889999998888777777776666543
No 148
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=77.29 E-value=33 Score=29.24 Aligned_cols=125 Identities=7% Similarity=-0.039 Sum_probs=72.9
Q ss_pred HHHHhcCCccchhHHHHhHhhhhcCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHH
Q 009632 130 VKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFED 209 (530)
Q Consensus 130 l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~ 209 (530)
...+-.++....|..+..++..- .+..+.. +.+.. .=.+|.+-...+..+ ... . +...+.+.+
T Consensus 53 a~~Lw~~~~~E~r~lA~li~~~~--~~~~~~~----~~~v~--~~~nWd~~D~~~~~l---~~~---~---~~~~~~~~~ 115 (235)
T 1t06_A 53 AEELYATGNYDAMYFAGIIADPK--AMSESDF----DRWID--GAYFYMLSDYVVAVT---LSE---S---NIAQDVADK 115 (235)
T ss_dssp HHHHHHTCCHHHHHHHHHHCCGG--GCCHHHH----HHHHH--TCCSHHHHHHTHHHH---HTT---S---SSHHHHHHH
T ss_pred HHHHHcCCcHHHHHHHHHhhCHH--hcCHHHH----HHHHh--CCCcHHHHHHHHHHH---Hhc---C---chHHHHHHH
Confidence 44455556666676666443211 2222222 22222 234576666543333 221 1 235566777
Q ss_pred hhcCCchhHHHHHHH----HHHHHhhhcCchhhhhccHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 009632 210 LTQDDQDSVRLLAVE----GCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA 271 (530)
Q Consensus 210 ~~~d~~~~vr~~a~~----~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~ 271 (530)
.+.|++.-+|..|+. .+..+...-..+...+.++..+...+.|++..|+.++..+|..++..
T Consensus 116 W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~ 181 (235)
T 1t06_A 116 WIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAIS 181 (235)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhh
Confidence 888888888888877 44442111112345666888888888899999999999999888764
No 149
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=77.14 E-value=11 Score=29.01 Aligned_cols=36 Identities=11% Similarity=0.158 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhh
Q 009632 159 ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATV 194 (530)
Q Consensus 159 ~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~ 194 (530)
+...++++.+.+-++++++.+...++..|..++..-
T Consensus 45 ~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~G 80 (140)
T 1vdy_A 45 SIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKS 80 (140)
T ss_dssp HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTS
T ss_pred hHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhC
Confidence 445788889999889999999999999998887653
No 150
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=76.11 E-value=77 Score=32.81 Aligned_cols=297 Identities=8% Similarity=-0.005 Sum_probs=153.8
Q ss_pred HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc--hhhHHHHHHHHHHhhcC---CchhHHHHHHHHHHHHhhhcC
Q 009632 160 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQD---DQDSVRLLAVEGCAALGKLLE 234 (530)
Q Consensus 160 ~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d---~~~~vr~~a~~~l~~l~~~~~ 234 (530)
...-++|.+...+.+++..+...+..++..++-..|. +.+.+.++..+...+.. .++.--.++++++..++..+-
T Consensus 336 fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv 415 (799)
T 1vsy_4 336 IVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIV 415 (799)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHT
T ss_pred HHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHh
Confidence 3456777777778899999999999999999875441 56666666666666665 444445577888888887654
Q ss_pred c-hhhhhccHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHhCCc------ccc---cchHHHHHHhcC-----------
Q 009632 235 P-QDCVAHILPVIVNF---SQDKSWRVRYMVANQLYELCEAVGPE------PTR---MDLVPAYVRLLR----------- 290 (530)
Q Consensus 235 ~-~~~~~~~~~~l~~~---~~d~~~~vr~~~~~~l~~l~~~~~~~------~~~---~~l~~~l~~~l~----------- 290 (530)
. ..+..++.|.+..+ ++-.++.--....+.+..+...++-. ... ....+.+.+.+.
T Consensus 416 ~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s~ipi~d~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 495 (799)
T 1vsy_4 416 MDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAAFIPIQDLTGEDDYISFESDTLPLVQQHFYHIKCGESSKTF 495 (799)
T ss_dssp TSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHTSCBCCCCCCCTTCCHHHHTHHHHHHHHHHHHTTCCSSSC
T ss_pred cCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHhccccccCCcchhhhhhhhhhhhhhhhhhhhccccccccc
Confidence 3 33455666666554 44455555556777777777765321 100 011122222211
Q ss_pred CCcHHHHHHHHHHHHHHHHhhCHHHHHhhhhHhHhHhcc-CCcHHHHHHHHHHHHhhccccCHHHHHHhHHHHHHHhhcC
Q 009632 291 DNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS-DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKD 369 (530)
Q Consensus 291 d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d 369 (530)
+-+.+.-..++... ..+-..+...++..+..+++ +.+..+-..+...+..+...+.++. .+.++..+.+...+
T Consensus 496 ~~d~~~~~~~~~~s-----T~~f~~~v~~f~drvf~llen~~Ee~l~~~l~~~~~~l~~~lS~~i-f~~~l~k~~~fv~~ 569 (799)
T 1vsy_4 496 RVDDELLNNAFKAS-----TTVFQSMLKVYVEKIFQLVDVDLEDSLVTKINQTTMILQESMDDKI-FNYFASLLNRNFWS 569 (799)
T ss_dssp CCCTTHHHHHHHHH-----TSTHHHHHHHHHHHHHHHTTSCCCTHHHHHHHHHHHHHHHTBCHHH-HHHHHHHHHHHHHS
T ss_pred cccHHHHHHHHHHH-----HhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhCCHHH-HHHHHHHHHHHHHH
Confidence 00111101111111 01111222333333434333 3333444455555666666666543 34444444554443
Q ss_pred CChHHHHHHHHhhHHh--------hhhhchhHHHhhHHHHHHHHhc----CC------------ChHHHHHHHHHHHHHH
Q 009632 370 EFPDVRLNIISKLDQV--------NQVIGIDLLSQSLLPAIVELAE----DR------------HWRVRLAIIEYIPLLA 425 (530)
Q Consensus 370 ~~~~vr~~a~~~l~~l--------~~~~~~~~~~~~l~~~l~~~~~----~~------------~~~~R~~~~~~l~~l~ 425 (530)
..... |.+.++.+ +.. .++ ..+.++|.+...+. +. ....-...+..++.+.
T Consensus 570 n~~~~---a~~~v~~L~~~~~~a~~~~-~P~-~~~~~~p~l~~~i~~~i~~ga~s~rs~~e~~~~D~~L~w~l~iL~~~v 644 (799)
T 1vsy_4 570 NDSFK---EKDPNYELVTIPLAALVRR-NNG-LSKELVRTLLFHIKEQIKRGAGSVRSTSEIQQRDVKLVLYLTALNDVL 644 (799)
T ss_dssp CSCCC---SSSCCTHHHHHHHHHHHHH-CGG-GHHHHHHHHHHHHHHHHHTTTTCSCCSSSCCTTTHHHHHHHHHHHHHH
T ss_pred hhhhh---HHHHHHHHHHHHHHHHHHh-CHH-HHHHHHHHHHHHHHHHHhccccccccccccCcchHHHHHHHHHHHHHH
Confidence 32211 22222222 222 233 34556666543221 11 1122233445555555
Q ss_pred hhhChhh--HHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHHh
Q 009632 426 SQLGVGF--FDDKLGALCMQWL-QDKVYSIRDAAANNLKRLAEEF 467 (530)
Q Consensus 426 ~~~~~~~--~~~~~~~~l~~~l-~d~~~~Vr~~a~~~l~~l~~~~ 467 (530)
...|... +.+.++.++..++ +.+...+-..+++.+..+...+
T Consensus 645 ~~~g~~lL~y~deL~~il~~~~~~~k~~~~~~~~~~ll~~lL~sL 689 (799)
T 1vsy_4 645 RNCHESLLEYSDELITFMKYLYDNVTNPPLDVITSIVIHSALATL 689 (799)
T ss_dssp TTTGGGGGTTHHHHHHHHHHHHHSCCCHHHHHHHTTHHHHHHHHH
T ss_pred hcCcHHHHccHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHh
Confidence 5556553 4466777776666 3455555577888888887664
No 151
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=76.00 E-value=56 Score=31.16 Aligned_cols=56 Identities=13% Similarity=-0.019 Sum_probs=35.6
Q ss_pred ChHHHHHHHHHHHHHHhhhChhhH-HH--HHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 009632 410 HWRVRLAIIEYIPLLASQLGVGFF-DD--KLGALCMQWLQDKVYSIRDAAANNLKRLAE 465 (530)
Q Consensus 410 ~~~~R~~~~~~l~~l~~~~~~~~~-~~--~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~ 465 (530)
+..+-..||.=++.+++..+.... .+ .....+++++.+++++||..|+.|++.+..
T Consensus 418 d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 418 EKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred CcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 455666677777777776553321 11 245667777777777777777777776653
No 152
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=75.92 E-value=22 Score=30.04 Aligned_cols=71 Identities=8% Similarity=0.066 Sum_probs=41.0
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcchh----hHHHHHHHHHHhhcC-CchhHHHHHHHHHHHHhhhcC
Q 009632 164 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH----LKTDIMSIFEDLTQD-DQDSVRLLAVEGCAALGKLLE 234 (530)
Q Consensus 164 l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~~~d-~~~~vr~~a~~~l~~l~~~~~ 234 (530)
....+.+-+...++.+...|+..|..+.++.|... ....++..+..++.+ .+..||..+++.+...+..+.
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 118 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFR 118 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhc
Confidence 33444455566788888888888888887766522 122344444444432 345667666666665555443
No 153
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=68.61 E-value=74 Score=29.44 Aligned_cols=208 Identities=11% Similarity=0.085 Sum_probs=109.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHH--h----CCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC-HHH-HHhhhhH
Q 009632 251 QDKSWRVRYMVANQLYELCEA--V----GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN-PEL-AIQHILP 322 (530)
Q Consensus 251 ~d~~~~vr~~~~~~l~~l~~~--~----~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~-~~~-~~~~l~~ 322 (530)
.+.+|..-..+.+.+-.+... + .+......++-.++.++..+++.-|......+..+...+. ... +...+-.
T Consensus 139 ~e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~n 218 (392)
T 2jak_A 139 LEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINN 218 (392)
T ss_dssp CCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred cccCChhHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888877776643 1 1233344677888888999999888888888877765432 211 1122222
Q ss_pred hHhHhccCCc-HHHHHHHHHHHHhhccccC---HHHHHHhHHHHHHHhhcCCChHH-HHHHHHhhHHhhhhhchhHHHhh
Q 009632 323 CVKELSSDSS-QHVRSALASVIMGMAPLLG---KDATIEQLLPIFLSLLKDEFPDV-RLNIISKLDQVNQVIGIDLLSQS 397 (530)
Q Consensus 323 ~l~~~~~d~~-~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~v-r~~a~~~l~~l~~~~~~~~~~~~ 397 (530)
.+..++...+ ..--..+++.++.+...+. +++....+...++.+.+.+...+ -.+...++..+++. ...+...
T Consensus 219 if~~fiye~e~~~GIaeLLeilgsIIngfa~PLKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eK--Dp~L~~~ 296 (392)
T 2jak_A 219 IFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEK--DSTLTEP 296 (392)
T ss_dssp HHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHH--CGGGHHH
T ss_pred HHHHHhhccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhc--CchhHHH
Confidence 2333332211 1122345566666655443 23333334444454444332211 01111111111111 1111223
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHHHH---HHHHHHHHhcCCcHHHHHHHHHHH
Q 009632 398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDK---LGALCMQWLQDKVYSIRDAAANNL 460 (530)
Q Consensus 398 l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~---~~~~l~~~l~d~~~~Vr~~a~~~l 460 (530)
++..+.+.=-..+..--...+.-+..+....+++.|... ++..+-+++..+..+|-+.|+..+
T Consensus 297 vi~~LLk~WP~tns~KevlFL~eleeiLe~~~~~~f~~i~~~lF~~la~ci~S~hfqVAErAL~~w 362 (392)
T 2jak_A 297 VVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYW 362 (392)
T ss_dssp HHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHGGG
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 333333332223333445677777788887887776654 444456677888888888888765
No 154
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=68.07 E-value=41 Score=26.21 Aligned_cols=74 Identities=8% Similarity=0.001 Sum_probs=58.2
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhChhhHH----HHHHHHHHHHhcC------CcHHHHHHHHHHHHHHHH
Q 009632 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD----DKLGALCMQWLQD------KVYSIRDAAANNLKRLAE 465 (530)
Q Consensus 396 ~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~----~~~~~~l~~~l~d------~~~~Vr~~a~~~l~~l~~ 465 (530)
+..+..+.+.+++++..+...|+..+..+.+.+|..+.. ..++.-+.+++.+ ....||..++..+..-..
T Consensus 37 k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 455666777778999999999999999999999976643 4577777777764 367899999999888877
Q ss_pred HhCh
Q 009632 466 EFGP 469 (530)
Q Consensus 466 ~~~~ 469 (530)
.++.
T Consensus 117 ~f~~ 120 (148)
T 1mhq_A 117 WFPE 120 (148)
T ss_dssp HCTT
T ss_pred HcCC
Confidence 7753
No 155
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=64.48 E-value=1.4e+02 Score=30.97 Aligned_cols=113 Identities=12% Similarity=0.058 Sum_probs=73.7
Q ss_pred hHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc--hhhhhccHHHHHHhcCC---CCHHHHHHHHHHHHHHHHHhC
Q 009632 199 LKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQD---KSWRVRYMVANQLYELCEAVG 273 (530)
Q Consensus 199 ~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~~~d---~~~~vr~~~~~~l~~l~~~~~ 273 (530)
+...+.|.+...+...+..+...+..++..++..-+. +.+.+.++..+...++. .++.--.++++++..++..+-
T Consensus 336 fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv 415 (799)
T 1vsy_4 336 IVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIV 415 (799)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHT
T ss_pred HHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHh
Confidence 3455777777888888889999899999988876551 33444455555555555 445555567788888887664
Q ss_pred Cc-ccccchHHHH---HHhcCCCcHHHHHHHHHHHHHHHHhh
Q 009632 274 PE-PTRMDLVPAY---VRLLRDNEAEVRIAAAGKVTKFCRIL 311 (530)
Q Consensus 274 ~~-~~~~~l~~~l---~~~l~d~~~~vr~~a~~~l~~~~~~~ 311 (530)
.. .+..++.+.+ +..+.-+++.--..+++.+..++..+
T Consensus 416 ~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s~i 457 (799)
T 1vsy_4 416 MDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAAFI 457 (799)
T ss_dssp TSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHTS
T ss_pred cCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHhc
Confidence 32 3344554444 44556666666677778888777654
No 156
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=63.74 E-value=84 Score=28.32 Aligned_cols=116 Identities=9% Similarity=-0.020 Sum_probs=74.0
Q ss_pred HHHHHhHHHHHHHhhcCCChHHHHHHHHhhHHhhhh-hchhHHH--hhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhC
Q 009632 353 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV-IGIDLLS--QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG 429 (530)
Q Consensus 353 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~-~~~~~~~--~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~ 429 (530)
++....=+..++....+.+.+....++.++.++... .|.+.+. ..++..+..++.+.+..+-..++..+..++....
T Consensus 155 EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se 234 (339)
T 3dad_A 155 EFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSE 234 (339)
T ss_dssp HHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCc
Confidence 333334456677777777888888888888887654 2332222 4566677777777777788888888877776542
Q ss_pred hhh--HHHH-----------HHHHHHHHhc---CCcHHHHHHHHHHHHHHHHHhC
Q 009632 430 VGF--FDDK-----------LGALCMQWLQ---DKVYSIRDAAANNLKRLAEEFG 468 (530)
Q Consensus 430 ~~~--~~~~-----------~~~~l~~~l~---d~~~~Vr~~a~~~l~~l~~~~~ 468 (530)
..+ +... .++.++..+. ..+.++...|.-.+..+....+
T Consensus 235 ~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~ap 289 (339)
T 3dad_A 235 NNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAALP 289 (339)
T ss_dssp GGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHCS
T ss_pred ccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcCC
Confidence 111 1111 1345666665 4667788888877777776654
No 157
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=62.75 E-value=1.1e+02 Score=29.09 Aligned_cols=248 Identities=8% Similarity=0.049 Sum_probs=117.5
Q ss_pred CCChhHHHHHHHHHHHHHhh--hc----chhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc-hh-hhhccHHH
Q 009632 174 DDMPMVRRSAASNLGKFAAT--VE----PAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP-QD-CVAHILPV 245 (530)
Q Consensus 174 d~~~~vR~~a~~~l~~l~~~--~~----~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-~~-~~~~~~~~ 245 (530)
|++|.--..+.+.+..+... +. +..+...++-.+..++..+++.-|......+..+-..+.. .. +...+-..
T Consensus 128 e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~ni 207 (449)
T 2npp_B 128 EAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNI 207 (449)
T ss_dssp CTTHHHHHHHHHHHHHHHTSTTCCSTTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55777666676766666543 21 2334455777788888888888888877777666544322 11 11112122
Q ss_pred HHHhcCC-CCHHHHHHHHHHHHHHHHHhCCc---ccccchHHHHHHhcCCCc-HHHHHHHHHHHHHHHHhhCHHHHHhhh
Q 009632 246 IVNFSQD-KSWRVRYMVANQLYELCEAVGPE---PTRMDLVPAYVRLLRDNE-AEVRIAAAGKVTKFCRILNPELAIQHI 320 (530)
Q Consensus 246 l~~~~~d-~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~~~~~~~l 320 (530)
+.+.... ....--..+.+.++.+..++... ....-+...++.+.+... ..--....+++..+.+.- +. +...+
T Consensus 208 f~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKD-p~-L~~~v 285 (449)
T 2npp_B 208 FYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKD-ST-LTEPV 285 (449)
T ss_dssp HHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHC-GG-GHHHH
T ss_pred HHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcC-cH-hHHHH
Confidence 2222111 11111123445555555544311 111112223333333322 222234445555554421 11 11222
Q ss_pred hHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHH---hHHHHHHHhhcCCChHHHHHHHHhhHHh--hhhhchhHHH
Q 009632 321 LPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIE---QLLPIFLSLLKDEFPDVRLNIISKLDQV--NQVIGIDLLS 395 (530)
Q Consensus 321 ~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~---~l~~~l~~~l~d~~~~vr~~a~~~l~~l--~~~~~~~~~~ 395 (530)
+..+...---.+..-....+.-+..+....++..+.. .+...+-.++..+...|-+.|+..+.+- ...+.. ..
T Consensus 286 i~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~li~~--n~ 363 (449)
T 2npp_B 286 VMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISD--NA 363 (449)
T ss_dssp HHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHT--TH
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHHHHh--ch
Confidence 2222221111222333345556666667777666644 4455566677888888888887766432 222211 12
Q ss_pred hhHHHHHHHHh-c--CCCh--HHHHHHHHHHHHHH
Q 009632 396 QSLLPAIVELA-E--DRHW--RVRLAIIEYIPLLA 425 (530)
Q Consensus 396 ~~l~~~l~~~~-~--~~~~--~~R~~~~~~l~~l~ 425 (530)
+.++|.+...+ . ..+| .+|..+..++..+.
T Consensus 364 ~~IlPii~p~L~~~s~~HWn~~V~~la~~vlk~l~ 398 (449)
T 2npp_B 364 AKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFM 398 (449)
T ss_dssp HHHHHHHHHHHTSCTTCCSSTTHHHHHHHHHHHHH
T ss_pred hhhHHhhHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 34556554432 2 2334 46777666666543
No 158
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=62.34 E-value=90 Score=28.15 Aligned_cols=139 Identities=9% Similarity=0.007 Sum_probs=85.2
Q ss_pred CChHHHHHHHHhhHHhhh---hhchhHHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHhhh-Ch-hhH-HHHHHHHHHH
Q 009632 370 EFPDVRLNIISKLDQVNQ---VIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-GV-GFF-DDKLGALCMQ 443 (530)
Q Consensus 370 ~~~~vr~~a~~~l~~l~~---~~~~~~~~~~l~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~-~~-~~~-~~~~~~~l~~ 443 (530)
.+...+..++..|+.+.. .+..+.+...=+..|.+...+.+.....-++.++..+.... |. ..+ ...++.-+..
T Consensus 130 ~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lys 209 (339)
T 3dad_A 130 SSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYT 209 (339)
T ss_dssp CCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHH
Confidence 344445555555555321 12223333333555666666667777777777777775432 22 111 2446666777
Q ss_pred HhcCCcHHHHHHHHHHHHHHHHHhChhH--Hh-----------hhhHHHHHhhcc---CCChHHHHHHHHHHHHHhhhcC
Q 009632 444 WLQDKVYSIRDAAANNLKRLAEEFGPEW--AM-----------QHITPQVLEMIN---NPHYLYRMTILRAISLLAPVMG 507 (530)
Q Consensus 444 ~l~d~~~~Vr~~a~~~l~~l~~~~~~~~--~~-----------~~i~~~l~~~~~---d~~~~vr~~a~~~l~~i~~~~~ 507 (530)
++......|-..|++.|..++.+-.... +. ....+.+...++ ..+..++.+++..+..+....+
T Consensus 210 lv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~ap 289 (339)
T 3dad_A 210 LCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAALP 289 (339)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHCS
T ss_pred HHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcCC
Confidence 7777888999999999998887752221 11 112456667776 5688899999999988887776
Q ss_pred h
Q 009632 508 S 508 (530)
Q Consensus 508 ~ 508 (530)
.
T Consensus 290 d 290 (339)
T 3dad_A 290 D 290 (339)
T ss_dssp S
T ss_pred C
Confidence 4
No 159
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=61.70 E-value=96 Score=28.26 Aligned_cols=14 Identities=7% Similarity=0.117 Sum_probs=7.1
Q ss_pred HHHHHHHHhhcCCc
Q 009632 202 DIMSIFEDLTQDDQ 215 (530)
Q Consensus 202 ~l~~~l~~~~~d~~ 215 (530)
.+.+.+..++.|.+
T Consensus 131 el~~~~~~L~~d~~ 144 (351)
T 3gvo_A 131 ELDGHVLKCVKDQN 144 (351)
T ss_dssp GGTTCHHHHHHSTT
T ss_pred HhhhhHHHHHHhhh
Confidence 34444555556654
No 160
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=51.50 E-value=2.1e+02 Score=31.51 Aligned_cols=153 Identities=11% Similarity=0.060 Sum_probs=0.0
Q ss_pred ccchhcchhHHHhhhcccchHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCccchhHHHHhHhhhhcCCCChH-
Q 009632 81 VEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI- 159 (530)
Q Consensus 81 ~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~~~~~l~~l~~~~~~~- 159 (530)
..+.+.++.+...++...++.||..+......+.+.+..-...+.+-.++...+.+....+-. |...+..++..-+..
T Consensus 395 ~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd~~~qqeVl~~Lv~hi~sg~~~eVd~-ALdvL~~L~~~~~~~l 473 (1323)
T 3s4w_B 395 KDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFDTYCQQEVVGALVTHVCSGTEAEVDT-ALDVLLELIVLNASAM 473 (1323)
T ss_dssp TTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHH-HHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhhhcCCCcHHHHH-HHHHHHHHHhcCHHHH
Q ss_pred -HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcch---hhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcC
Q 009632 160 -LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA---HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLE 234 (530)
Q Consensus 160 -~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~ 234 (530)
....++..++..+++-+..--+.....+..++-.-+.+ ...+++.=.+.+.+..++...+..++-....+...++
T Consensus 474 ~~~a~~l~giLD~l~~l~~~QiRklf~iL~~laf~~~~~~~~~i~ddl~ivIRKQLs~~~~~~KriGIIGav~~v~~~~ 552 (1323)
T 3s4w_B 474 RLNAAFVKGILDYLENMSPQQIRKIFCILSTLAFSQQPGTSNHIQDDMHLVIRKQLSSTVFKYKLIGIIGAVTMAGIMA 552 (1323)
T ss_dssp HHTHHHHHGGGGGGGGCCHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHcCCCCCcchhhHHhHHHHHHHHHhCCchhhhhhhHHHHHHHHHHHH
No 161
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=51.46 E-value=85 Score=24.52 Aligned_cols=97 Identities=9% Similarity=0.081 Sum_probs=64.1
Q ss_pred hcCCChHHHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHhChhHHh----hhhHHH-
Q 009632 406 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQD-KVYSIRDAAANNLKRLAEEFGPEWAM----QHITPQ- 479 (530)
Q Consensus 406 ~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d-~~~~Vr~~a~~~l~~l~~~~~~~~~~----~~i~~~- 479 (530)
+.+++|..-...+..+.. . . .-....+..+.+-+.. +++.+...|+..+..+++++|..+.. .+++..
T Consensus 29 l~~~Dw~~ileicD~In~---~--~-~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~ 102 (152)
T 3rru_A 29 VQTEDWGQFMHICDIINT---T--Q-DGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKEN 102 (152)
T ss_dssp CCSCCHHHHHHHHHHHHH---S--T-THHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTT
T ss_pred CCCccHHHHHHHHHHHhC---C--C-ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHH
Confidence 345678754444444332 1 1 1234456667666663 57778888999999999999987653 344543
Q ss_pred HHhhccCC---ChHHHHHHHHHHHHHhhhcCh
Q 009632 480 VLEMINNP---HYLYRMTILRAISLLAPVMGS 508 (530)
Q Consensus 480 l~~~~~d~---~~~vr~~a~~~l~~i~~~~~~ 508 (530)
|.++++++ ...||..++..+..+...++.
T Consensus 103 L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F~~ 134 (152)
T 3rru_A 103 LVKLLNPRYNLPLDIQNRILNFIKTWSQGFPG 134 (152)
T ss_dssp TGGGGSGGGCCCHHHHHHHHHHHHHHHTCCSS
T ss_pred HHHHhcCCCCCcHHHHHHHHHHHHHHHHHhCC
Confidence 55555543 447999999999999988765
No 162
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=51.31 E-value=1.7e+02 Score=27.92 Aligned_cols=68 Identities=15% Similarity=0.166 Sum_probs=51.9
Q ss_pred HHHHHHHHhc----------CCcHHHHHHHHHHHHHHHHHhChhHH---hhhhHHHHHhhccCCChHHHHHHHHHHHHHh
Q 009632 437 LGALCMQWLQ----------DKVYSIRDAAANNLKRLAEEFGPEWA---MQHITPQVLEMINNPHYLYRMTILRAISLLA 503 (530)
Q Consensus 437 ~~~~l~~~l~----------d~~~~Vr~~a~~~l~~l~~~~~~~~~---~~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~ 503 (530)
++..+.+++. +.++.+-.-||.=+|++++.++.... .-.....++++++++|.+||-.|+.++..++
T Consensus 396 llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 396 IFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp HHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 5566666665 23677888899999999998754321 1345777888999999999999999999876
Q ss_pred h
Q 009632 504 P 504 (530)
Q Consensus 504 ~ 504 (530)
.
T Consensus 476 ~ 476 (480)
T 1ho8_A 476 G 476 (480)
T ss_dssp H
T ss_pred H
Confidence 4
No 163
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=50.15 E-value=1.6e+02 Score=27.35 Aligned_cols=219 Identities=14% Similarity=0.150 Sum_probs=106.5
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHHHhhhcc--hhhHHHHHHHHHHhhcCCch-hHHHHHHHHHHHHhhhcCc---hh
Q 009632 164 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQD-SVRLLAVEGCAALGKLLEP---QD 237 (530)
Q Consensus 164 l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~-~vr~~a~~~l~~l~~~~~~---~~ 237 (530)
.+-.++.+.++++++=|...-..+-.+-..+.. ......+-..+.+++...+. .=-...++.++++...+.. +.
T Consensus 130 Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PLkee 209 (403)
T 3fga_B 130 FVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEE 209 (403)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHH
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchHH
Confidence 445566778888888888887777765544332 12223334445554443322 1122456667777766532 22
Q ss_pred hhhccHHHHHHhcCCCCHH-HHHHHHHHHHHHHHHhCCccc-ccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHH
Q 009632 238 CVAHILPVIVNFSQDKSWR-VRYMVANQLYELCEAVGPEPT-RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL 315 (530)
Q Consensus 238 ~~~~~~~~l~~~~~d~~~~-vr~~~~~~l~~l~~~~~~~~~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~ 315 (530)
....+...+..+-+.++.. --.....++..+.+. +.. ...++..+++.=--+++.=....+.-+..+...+++..
T Consensus 210 hk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eK---Dp~L~~~vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~ 286 (403)
T 3fga_B 210 HKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEK---DSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSE 286 (403)
T ss_dssp HHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHH---CGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHh---CchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHH
Confidence 2222233333333332211 112333444444432 111 11222222222222333333456666777888788776
Q ss_pred HHhhhhHhH---hHhccCCcHHHHHHHHHHHHh--hccccCHHHHHHhHHHHHHHhh----cCC-ChHHHHHHHHhhHHh
Q 009632 316 AIQHILPCV---KELSSDSSQHVRSALASVIMG--MAPLLGKDATIEQLLPIFLSLL----KDE-FPDVRLNIISKLDQV 385 (530)
Q Consensus 316 ~~~~l~~~l---~~~~~d~~~~vr~~~~~~l~~--l~~~~~~~~~~~~l~~~l~~~l----~d~-~~~vr~~a~~~l~~l 385 (530)
+.....|.+ ...+.+++.+|-..++..+.. +...+ ......++|.+...| +.. +..||..+..++..+
T Consensus 287 f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li--~~n~~~IlPii~p~L~~~~~~HWn~~v~~l~~~vlk~l 364 (403)
T 3fga_B 287 FVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLI--SDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLF 364 (403)
T ss_dssp HHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHH--HTTHHHHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHH--HHhHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 654444444 455678888888877654321 11100 111234445544443 222 567777777777665
Q ss_pred hh
Q 009632 386 NQ 387 (530)
Q Consensus 386 ~~ 387 (530)
.+
T Consensus 365 ~e 366 (403)
T 3fga_B 365 ME 366 (403)
T ss_dssp HT
T ss_pred HH
Confidence 43
No 164
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=48.83 E-value=1.2e+02 Score=27.20 Aligned_cols=11 Identities=18% Similarity=-0.076 Sum_probs=5.4
Q ss_pred HHHHHhcCCcH
Q 009632 440 LCMQWLQDKVY 450 (530)
Q Consensus 440 ~l~~~l~d~~~ 450 (530)
.+..++.|+--
T Consensus 274 ~l~~L~~d~~g 284 (333)
T 3bwt_A 274 GIQSLLNDSYG 284 (333)
T ss_dssp HHHHHHTSTTH
T ss_pred HHHHHHcCChH
Confidence 34455555543
No 165
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=48.71 E-value=1.5e+02 Score=26.55 Aligned_cols=135 Identities=13% Similarity=0.189 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHhhccccC-HHHHHHhHHHHHH-HhhcC---CChHHHH-HHHHhhHHhhhhhch----h--HHHhhHHHH
Q 009632 334 HVRSALASVIMGMAPLLG-KDATIEQLLPIFL-SLLKD---EFPDVRL-NIISKLDQVNQVIGI----D--LLSQSLLPA 401 (530)
Q Consensus 334 ~vr~~~~~~l~~l~~~~~-~~~~~~~l~~~l~-~~l~d---~~~~vr~-~a~~~l~~l~~~~~~----~--~~~~~l~~~ 401 (530)
.+|..+++.+..+..... .+.....++|.++ ..|.| ..+..|. ..+..+..++..++. . .+.+.+...
T Consensus 44 ~vKkeiLkLiet~i~~~~d~~~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe~ 123 (321)
T 1w9c_A 44 TVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFEC 123 (321)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 456666666666554432 2344445555554 34433 2233332 223334444444432 1 222344444
Q ss_pred HHHHhcC---CChHHHHHHHHHHHHHHhhhChhhH------HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC
Q 009632 402 IVELAED---RHWRVRLAIIEYIPLLASQLGVGFF------DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG 468 (530)
Q Consensus 402 l~~~~~~---~~~~~R~~~~~~l~~l~~~~~~~~~------~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~ 468 (530)
-.++.++ ..+..|......+..+...+=...+ ...++..+.-..+++..+|-+.++.++..+...++
T Consensus 124 TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~ 199 (321)
T 1w9c_A 124 TLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVA 199 (321)
T ss_dssp HHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHh
Confidence 4455553 4688999999999888765432222 23466666677889999999999999988888774
No 166
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=46.26 E-value=1.7e+02 Score=26.53 Aligned_cols=7 Identities=29% Similarity=0.344 Sum_probs=2.7
Q ss_pred HHHhhcC
Q 009632 363 FLSLLKD 369 (530)
Q Consensus 363 l~~~l~d 369 (530)
+..+..|
T Consensus 208 ~~~L~~d 214 (351)
T 3gvo_A 208 TEQLVQD 214 (351)
T ss_dssp HHHHHTS
T ss_pred HHhcCCC
Confidence 3333333
No 167
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=41.65 E-value=2e+02 Score=26.37 Aligned_cols=14 Identities=7% Similarity=0.278 Sum_probs=6.2
Q ss_pred HHhHhhhhcCCCCh
Q 009632 145 ACGLFHIAYPSAPD 158 (530)
Q Consensus 145 ~~~~l~~l~~~~~~ 158 (530)
+++.+-.+.+..++
T Consensus 42 gsR~lQ~~l~~~~~ 55 (369)
T 3k49_A 42 GSRFIQRELATSPA 55 (369)
T ss_dssp HHHHHHHHHTTCCH
T ss_pred chHHHHHHhccCCH
Confidence 44444444444443
No 168
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=41.52 E-value=77 Score=26.94 Aligned_cols=70 Identities=7% Similarity=0.034 Sum_probs=45.7
Q ss_pred HHHHHHhhcCCCChhHHHHHHH----HHHHHHhhhcchhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhc
Q 009632 164 LRSIYTQLCQDDMPMVRRSAAS----NLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLL 233 (530)
Q Consensus 164 l~~~l~~l~~d~~~~vR~~a~~----~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~ 233 (530)
..+.+.....|++.-+|+.+.. .+..+.....++...+.++..+...+.|++..|+.+...+|..++...
T Consensus 109 ~~~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~~ 182 (235)
T 1t06_A 109 AQDVADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAISY 182 (235)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhhC
Confidence 3445556666777666766666 333311111134556677888888888988899998888888877653
No 169
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=38.12 E-value=1.4e+02 Score=23.05 Aligned_cols=36 Identities=11% Similarity=0.058 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc
Q 009632 200 KTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP 235 (530)
Q Consensus 200 ~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~ 235 (530)
.+.++..+.+.+....+.-+..+++.+..+++..|.
T Consensus 41 a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~ 76 (144)
T 1sz9_A 41 AQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGS 76 (144)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccc
Confidence 456667666666667788888999999999888765
No 170
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=34.05 E-value=1.7e+02 Score=22.84 Aligned_cols=108 Identities=6% Similarity=-0.044 Sum_probs=63.1
Q ss_pred cCCCChhHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcC-CchhHHHHHHHHHHHHhhhcCchhh----hhccHH-H
Q 009632 172 CQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQD-DQDSVRLLAVEGCAALGKLLEPQDC----VAHILP-V 245 (530)
Q Consensus 172 ~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d-~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~~~-~ 245 (530)
+.+++|..-...|..+.. . +.-..+.+..+.+.+.. .++.+...|+..+..+.+.+|..-. ...++. .
T Consensus 29 l~~~Dw~~ileicD~In~-----~-~~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~ 102 (152)
T 3rru_A 29 VQTEDWGQFMHICDIINT-----T-QDGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKEN 102 (152)
T ss_dssp CCSCCHHHHHHHHHHHHH-----S-TTHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTT
T ss_pred CCCccHHHHHHHHHHHhC-----C-CccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHH
Confidence 345677644444444332 1 11234566667777764 4777777899999999998887311 112332 2
Q ss_pred HHHhcCC---CCHHHHHHHHHHHHHHHHHhCCcccccchHHHH
Q 009632 246 IVNFSQD---KSWRVRYMVANQLYELCEAVGPEPTRMDLVPAY 285 (530)
Q Consensus 246 l~~~~~d---~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l 285 (530)
+..++++ ....||..+...+...+..++.+.....+...+
T Consensus 103 L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F~~~p~l~~i~~~Y 145 (152)
T 3rru_A 103 LVKLLNPRYNLPLDIQNRILNFIKTWSQGFPGGVDVSEVKEVY 145 (152)
T ss_dssp TGGGGSGGGCCCHHHHHHHHHHHHHHHTCCSSSCCCHHHHHHH
T ss_pred HHHHhcCCCCCcHHHHHHHHHHHHHHHHHhCCCCcchHHHHHH
Confidence 3344443 235799999888888888776554333444433
No 171
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=29.46 E-value=1.9e+02 Score=22.18 Aligned_cols=73 Identities=7% Similarity=0.013 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhHHh---hhhHHHHHhhccCCChHHHHHHHHHHHHHhhh
Q 009632 433 FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM---QHITPQVLEMINNPHYLYRMTILRAISLLAPV 505 (530)
Q Consensus 433 ~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~---~~i~~~l~~~~~d~~~~vr~~a~~~l~~i~~~ 505 (530)
....++..+.+.+....+.-+..++..+-.+++..|.++.. ..+.+.+...+...+...|....+.+..+-+.
T Consensus 40 ~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W~~~ 115 (144)
T 1sz9_A 40 CAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWLNP 115 (144)
T ss_dssp GHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHHTSG
T ss_pred HHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhCc
Confidence 34566777777666666788888999999999888876432 34455555666666788898888888888754
No 172
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=28.26 E-value=3.6e+02 Score=24.93 Aligned_cols=209 Identities=6% Similarity=-0.005 Sum_probs=97.6
Q ss_pred CCCChhHHHHHHHHHHHHHhh--hc----chhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcCc-hh-hhhccHH
Q 009632 173 QDDMPMVRRSAASNLGKFAAT--VE----PAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP-QD-CVAHILP 244 (530)
Q Consensus 173 ~d~~~~vR~~a~~~l~~l~~~--~~----~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-~~-~~~~~~~ 244 (530)
.|++|.--..+.+.+..+... +. +..+...++-.+..++..+++.-|......+..+-..+.. .. +...+-.
T Consensus 139 ~e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~n 218 (392)
T 2jak_A 139 LEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINN 218 (392)
T ss_dssp CCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred cccCChhHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888777777777777653 22 2334455777788888888888888877777666543322 11 1112222
Q ss_pred HHHHhcCC-CCHHHHHHHHHHHHHHHHHhCCc---ccccchHHHHHHhcCCCc-HHHHHHHHHHHHHHHHhhCHHHHHhh
Q 009632 245 VIVNFSQD-KSWRVRYMVANQLYELCEAVGPE---PTRMDLVPAYVRLLRDNE-AEVRIAAAGKVTKFCRILNPELAIQH 319 (530)
Q Consensus 245 ~l~~~~~d-~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~~~~~~~ 319 (530)
.+.+.... ....--..+.+.++.+..++... ....-+...++.+.+... ..-.....+++..+.+.- +. +...
T Consensus 219 if~~fiye~e~~~GIaeLLeilgsIIngfa~PLKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKD-p~-L~~~ 296 (392)
T 2jak_A 219 IFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKD-ST-LTEP 296 (392)
T ss_dssp HHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHC-GG-GHHH
T ss_pred HHHHHhhccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcC-ch-hHHH
Confidence 22222221 11111234556666666665421 111112233333333322 112223334444444321 11 1112
Q ss_pred hhHhHhHhccCCcHHHHHHHHHHHHhhccccCHHHHHH---hHHHHHHHhhcCCChHHHHHHHHhhH
Q 009632 320 ILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIE---QLLPIFLSLLKDEFPDVRLNIISKLD 383 (530)
Q Consensus 320 l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~---~l~~~l~~~l~d~~~~vr~~a~~~l~ 383 (530)
++..+.+.---.+..-....+.-+..+...++.+.+.. .+...+-.++..+...|-+.|+..+.
T Consensus 297 vi~~LLk~WP~tns~KevlFL~eleeiLe~~~~~~f~~i~~~lF~~la~ci~S~hfqVAErAL~~wn 363 (392)
T 2jak_A 297 VVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWN 363 (392)
T ss_dssp HHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHGGGG
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHhC
Confidence 22222111100111112233444555555566555543 34444556667777777777766553
No 173
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=21.42 E-value=2.5e+02 Score=25.63 Aligned_cols=16 Identities=6% Similarity=0.054 Sum_probs=10.2
Q ss_pred HHHHhhHHHHHHhhcc
Q 009632 509 EITCSRLLPVVINASK 524 (530)
Q Consensus 509 ~~~~~~~~p~l~~~l~ 524 (530)
+.+.+.+.|.+..+..
T Consensus 330 ~~l~~~i~p~l~~L~~ 345 (369)
T 3k49_A 330 KLIVIAIRAYLDKLNK 345 (369)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4456677777777643
No 174
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=20.86 E-value=4.5e+02 Score=23.46 Aligned_cols=97 Identities=8% Similarity=-0.016 Sum_probs=60.5
Q ss_pred hhHHHHHHHHHHHHhhhcCch--hhhhccHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHhCCcc------cccchHHH
Q 009632 216 DSVRLLAVEGCAALGKLLEPQ--DCVAHILPVIVNFSQ---DKSWRVRYMVANQLYELCEAVGPEP------TRMDLVPA 284 (530)
Q Consensus 216 ~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~---d~~~~vr~~~~~~l~~l~~~~~~~~------~~~~l~~~ 284 (530)
++|-......+..+...+.+. .+.+.+..+-..+++ ++-|..|....+.+..+...+-... .-..++..
T Consensus 92 peVL~l~~tii~kl~~~i~~~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvids 171 (321)
T 1w9c_A 92 PEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDS 171 (321)
T ss_dssp THHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHH
Confidence 445444444444444443331 122222222233444 3568999999999998887643211 12457777
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHhhC
Q 009632 285 YVRLLRDNEAEVRIAAAGKVTKFCRILN 312 (530)
Q Consensus 285 l~~~l~d~~~~vr~~a~~~l~~~~~~~~ 312 (530)
+...++++..+|-..++..+..+.+.+.
T Consensus 172 iiWa~kH~~r~V~e~gL~il~~ll~n~~ 199 (321)
T 1w9c_A 172 IIWAFKHTMRNVADTGLQILFTLLQNVA 199 (321)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCchHHHHHHHHHHHHHHHHh
Confidence 8888999999999999999988887663
Done!