Query 009633
Match_columns 530
No_of_seqs 138 out of 799
Neff 2.8
Searched_HMMs 46136
Date Thu Mar 28 15:28:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009633.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009633hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02859 AMPKbeta_GBD_like AMP- 99.9 1.6E-23 3.5E-28 170.3 9.7 78 438-528 1-79 (79)
2 cd02861 E_set_proteins_like E 99.8 3.5E-18 7.6E-23 138.5 9.0 76 439-527 2-81 (82)
3 KOG1616 Protein involved in Sn 99.6 2.4E-15 5.2E-20 149.2 7.9 83 438-530 79-162 (289)
4 cd02858 Esterase_N_term Estera 99.2 6E-11 1.3E-15 97.7 9.2 77 438-527 5-84 (85)
5 cd02688 E_set E or "early" set 98.8 1.5E-08 3.2E-13 78.2 7.9 70 439-520 4-75 (83)
6 cd02854 Glycogen_branching_enz 98.4 9.2E-07 2E-11 75.8 7.4 68 439-518 5-86 (99)
7 PF02922 CBM_48: Carbohydrate- 98.3 4.1E-07 8.8E-12 72.8 3.7 58 439-507 11-73 (85)
8 cd05808 CBM20_alpha_amylase Al 97.7 0.00016 3.4E-09 59.5 8.3 63 440-514 2-78 (95)
9 cd02860 Pullulanase_N_term Pul 97.7 0.00016 3.5E-09 60.5 7.3 68 440-521 9-88 (100)
10 cd02855 Glycogen_branching_enz 97.6 0.00044 9.6E-09 57.0 8.7 77 440-527 22-105 (106)
11 PF00686 CBM_20: Starch bindin 97.5 0.00032 7E-09 58.5 6.5 58 439-504 2-68 (96)
12 COG0296 GlgB 1,4-alpha-glucan 97.4 0.0002 4.4E-09 79.0 6.3 68 437-516 34-109 (628)
13 PRK12568 glycogen branching en 97.4 0.00061 1.3E-08 76.4 9.1 69 437-518 136-212 (730)
14 cd02856 Glycogen_debranching_e 97.3 0.00099 2.2E-08 56.4 7.7 53 440-506 10-66 (103)
15 PRK12313 glycogen branching en 97.2 0.00095 2.1E-08 72.6 8.6 68 438-517 37-111 (633)
16 cd05818 CBM20_water_dikinase P 97.2 0.0025 5.4E-08 53.7 8.8 67 439-518 2-80 (92)
17 PLN02447 1,4-alpha-glucan-bran 97.1 0.002 4.3E-08 72.7 9.5 63 440-515 115-191 (758)
18 cd05809 CBM20_beta_amylase Bet 97.1 0.0036 7.8E-08 53.1 8.8 70 438-516 2-86 (99)
19 cd05814 CBM20_Prei4 Prei4, N-t 97.1 0.0019 4.2E-08 56.5 7.3 55 440-504 2-66 (120)
20 cd02852 Isoamylase_N_term Isoa 97.0 0.0026 5.6E-08 54.9 6.9 59 439-508 7-72 (119)
21 PRK14705 glycogen branching en 96.9 0.0027 5.8E-08 74.8 8.8 67 437-515 636-710 (1224)
22 cd05820 CBM20_novamyl Novamyl 96.9 0.0091 2E-07 51.2 9.8 70 438-519 2-90 (103)
23 cd05811 CBM20_glucoamylase Glu 96.9 0.01 2.2E-07 50.3 9.8 74 438-519 6-93 (106)
24 PRK14706 glycogen branching en 96.9 0.003 6.6E-08 69.7 8.2 68 438-518 37-112 (639)
25 PRK05402 glycogen branching en 96.8 0.0042 9E-08 69.0 8.7 67 439-516 131-204 (726)
26 cd02853 MTHase_N_term Maltooli 96.7 0.0079 1.7E-07 49.3 7.6 72 439-527 8-82 (85)
27 cd05817 CBM20_DSP Dual-specifi 96.7 0.006 1.3E-07 51.8 7.0 52 441-504 2-62 (100)
28 TIGR02402 trehalose_TreZ malto 96.7 0.0041 9E-08 67.0 7.4 70 441-527 1-73 (542)
29 TIGR01515 branching_enzym alph 96.6 0.0065 1.4E-07 66.3 8.3 68 439-518 28-103 (613)
30 cd05813 CBM20_genethonin_1 Gen 96.6 0.011 2.3E-07 49.5 7.5 53 440-504 2-62 (95)
31 cd05467 CBM20 The family 20 ca 96.5 0.011 2.4E-07 48.4 7.4 53 441-504 2-65 (96)
32 cd05816 CBM20_DPE2_repeat2 Dis 96.5 0.028 6.1E-07 47.6 10.1 66 441-518 2-84 (99)
33 cd05807 CBM20_CGTase CGTase, C 96.4 0.027 6E-07 47.7 9.4 74 438-519 2-90 (101)
34 PLN02316 synthase/transferase 96.0 0.064 1.4E-06 62.8 12.4 63 437-506 327-398 (1036)
35 PRK05402 glycogen branching en 96.0 0.013 2.9E-07 65.1 6.6 63 440-515 29-96 (726)
36 cd05810 CBM20_alpha_MTH Glucan 95.6 0.087 1.9E-06 45.0 8.7 67 440-518 2-86 (97)
37 cd05815 CBM20_DPE2_repeat1 Dis 94.9 0.1 2.2E-06 44.1 7.0 55 441-504 2-65 (101)
38 TIGR02104 pulA_typeI pullulana 94.3 0.13 2.8E-06 56.2 7.6 66 440-518 20-95 (605)
39 PF03423 CBM_25: Carbohydrate 93.8 0.093 2E-06 44.4 4.3 62 440-509 3-75 (87)
40 PLN02316 synthase/transferase 92.8 0.71 1.5E-05 54.5 10.8 56 438-504 490-557 (1036)
41 PF11806 DUF3327: Domain of un 92.7 0.67 1.4E-05 41.6 8.3 79 439-528 2-111 (122)
42 PRK10439 enterobactin/ferric e 92.7 0.46 1E-05 50.0 8.4 82 435-529 35-161 (411)
43 cd05806 CBM20_laforin Laforin 91.9 0.72 1.6E-05 41.4 7.5 54 446-504 12-74 (112)
44 PLN02950 4-alpha-glucanotransf 91.4 1.3 2.8E-05 51.6 10.7 71 437-519 151-237 (909)
45 TIGR02100 glgX_debranch glycog 91.0 0.52 1.1E-05 53.0 6.9 55 440-508 15-75 (688)
46 PRK03705 glycogen debranching 90.9 0.51 1.1E-05 52.9 6.7 55 440-508 20-78 (658)
47 PLN02960 alpha-amylase 89.1 0.96 2.1E-05 52.8 7.2 59 440-505 129-198 (897)
48 TIGR02102 pullulan_Gpos pullul 88.7 1.1 2.3E-05 53.4 7.3 66 440-517 328-408 (1111)
49 PLN02950 4-alpha-glucanotransf 88.5 2.6 5.6E-05 49.3 10.1 67 439-514 9-90 (909)
50 TIGR02103 pullul_strch alpha-1 85.9 2 4.3E-05 50.2 7.2 68 439-518 135-216 (898)
51 cd02857 CD_pullulan_degrading_ 83.8 5.6 0.00012 33.2 7.3 58 439-504 16-79 (116)
52 PRK14510 putative bifunctional 73.9 11 0.00023 45.5 8.2 56 439-508 23-84 (1221)
53 PLN02877 alpha-amylase/limit d 58.4 27 0.00058 41.7 7.3 65 439-518 222-303 (970)
54 PLN03244 alpha-amylase; Provis 54.5 10 0.00022 44.5 3.1 59 441-505 133-201 (872)
55 PF01357 Pollen_allerg_1: Poll 54.4 26 0.00057 29.5 4.7 58 439-511 14-77 (82)
56 PF03370 CBM_21: Putative phos 51.6 44 0.00096 29.4 5.9 66 439-507 21-99 (113)
57 PF02903 Alpha-amylase_N: Alph 51.4 31 0.00066 30.1 4.9 67 440-514 24-100 (120)
58 KOG2264 Exostosin EXT1L [Signa 51.2 19 0.0004 41.3 4.3 52 375-426 116-167 (907)
59 PF11896 DUF3416: Domain of un 49.6 12 0.00026 36.4 2.3 40 459-511 55-99 (187)
60 KOG0470 1,4-alpha-glucan branc 48.0 21 0.00046 41.5 4.2 41 441-492 115-157 (757)
61 COG1725 Predicted transcriptio 47.9 26 0.00057 32.5 4.1 77 62-140 14-91 (125)
62 PF10281 Ish1: Putative stress 44.3 34 0.00074 25.0 3.4 30 66-102 7-36 (38)
63 TIGR03503 conserved hypothetic 41.6 50 0.0011 35.7 5.5 26 482-507 168-195 (374)
64 COG3794 PetE Plastocyanin [Ene 40.2 81 0.0018 29.4 6.0 50 438-501 61-111 (128)
65 PF00392 GntR: Bacterial regul 36.0 39 0.00085 26.4 2.9 44 62-107 3-47 (64)
66 cd01278 aprataxin_related apra 34.0 36 0.00077 28.5 2.5 34 77-111 42-75 (104)
67 PRK10785 maltodextrin glucosid 33.8 1.5E+02 0.0031 33.2 7.8 62 438-507 20-87 (598)
68 PF00730 HhH-GPD: HhH-GPD supe 33.4 41 0.0009 28.1 2.8 36 66-106 16-51 (108)
69 smart00345 HTH_GNTR helix_turn 32.5 46 0.001 24.2 2.6 33 64-96 1-34 (60)
70 TIGR02154 PhoB phosphate regul 32.1 6 0.00013 34.7 -2.5 23 85-107 203-225 (226)
71 PF08022 FAD_binding_8: FAD-bi 30.8 16 0.00036 31.2 0.0 13 19-37 47-59 (105)
72 PF04985 Phage_tube: Phage tai 29.4 2E+02 0.0044 26.6 6.8 54 451-521 99-154 (167)
73 KOG1263 Multicopper oxidases [ 28.5 66 0.0014 36.3 4.1 32 483-514 96-131 (563)
74 TIGR03798 ocin_TIGR03798 bacte 27.9 22 0.00047 28.5 0.2 39 56-113 9-47 (64)
75 PF13473 Cupredoxin_1: Cupredo 27.9 1.2E+02 0.0026 25.7 4.7 16 485-500 74-90 (104)
76 COG0014 ProA Gamma-glutamyl ph 27.2 30 0.00064 37.9 1.1 62 56-119 150-220 (417)
77 PF07862 Nif11: Nitrogen fixat 25.5 48 0.001 25.1 1.7 17 92-108 28-44 (49)
78 PF14347 DUF4399: Domain of un 25.3 1.1E+02 0.0024 26.7 4.0 32 484-516 50-81 (87)
79 KOG3990 Uncharacterized conser 25.2 48 0.001 34.8 2.1 31 372-402 231-261 (305)
80 KOG0045 Cytosolic Ca2+-depende 24.4 69 0.0015 36.5 3.4 27 493-519 114-143 (612)
81 cd01276 PKCI_related Protein K 24.1 62 0.0013 26.9 2.3 44 77-123 40-83 (104)
82 TIGR02375 pseudoazurin pseudoa 23.4 2.5E+02 0.0055 25.4 6.1 16 439-454 23-38 (116)
83 PF03801 Ndc80_HEC: HEC/Ndc80p 21.1 76 0.0017 29.8 2.5 39 61-100 38-76 (157)
84 COG2117 Predicted subunit of t 21.0 43 0.00093 33.3 0.8 51 100-157 133-184 (198)
85 cd01275 FHIT FHIT (fragile his 20.6 80 0.0017 27.6 2.3 44 77-124 40-83 (126)
86 PF15513 DUF4651: Domain of un 20.2 71 0.0015 26.9 1.8 16 61-76 4-19 (62)
87 PF08308 PEGA: PEGA domain; I 20.2 2.9E+02 0.0063 21.7 5.3 20 441-460 4-23 (71)
No 1
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=99.90 E-value=1.6e-23 Score=170.34 Aligned_cols=78 Identities=35% Similarity=0.699 Sum_probs=71.5
Q ss_pred ceEEEEEEecCCceEEEEeeeCCCCcccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEECCEeeeCCCCCee
Q 009633 438 LEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESV 517 (530)
Q Consensus 438 LrpVTFrW~g~AkeVeVTGSFNNWk~~IpMeKd~ss~~~a~~g~kksGvWStTL~LPPGrYEYKFIVDGEW~~DPdnPtV 517 (530)
+++|+|+|+++|++|+|+|+|+||++.++|.+. ..+ |.+++.||||.|+|||+|||+|++||+.|++
T Consensus 1 ~~~v~f~~~~~a~~V~v~G~F~~W~~~~pm~~~------------~~~-~~~~~~L~~g~y~YkF~Vdg~w~~d~~~~~~ 67 (79)
T cd02859 1 MVPTTFVWPGGGKEVYVTGSFDNWKKKIPLEKS------------GKG-FSATLRLPPGKYQYKFIVDGEWRHSPDLPTE 67 (79)
T ss_pred CeEEEEEEcCCCcEEEEEEEcCCCCccccceEC------------CCC-cEEEEEcCCCCEEEEEEECCEEEeCCCCCcc
Confidence 368999999999999999999999988999874 334 9999999999999999999999999999999
Q ss_pred cc-CCccceEEE
Q 009633 518 TK-GGICNNILR 528 (530)
Q Consensus 518 tD-gGnvNNVLe 528 (530)
.+ .|+.||+|.
T Consensus 68 ~d~~G~~NN~i~ 79 (79)
T cd02859 68 TDDEGNVNNVID 79 (79)
T ss_pred CCCCCcEeeeEC
Confidence 87 699999983
No 2
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.75 E-value=3.5e-18 Score=138.47 Aligned_cols=76 Identities=39% Similarity=0.707 Sum_probs=67.3
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCCcccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEECCEee-eCCCCCe
Q 009633 439 EVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWK-VDPQRES 516 (530)
Q Consensus 439 rpVTFrW~g~-AkeVeVTGSFNNWk~~IpMeKd~ss~~~a~~g~kksGvWStTL~LPPGrYEYKFIVDGEW~-~DPdnPt 516 (530)
.+|+|+|.++ +++|+|+|+|++|+ .++|.+. .+|.|++++.|+||.|+|||+|||.|. +||.++.
T Consensus 2 ~~vtf~~~ap~a~~V~v~G~fn~W~-~~~m~~~------------~~G~w~~~~~l~~G~y~Ykf~vdg~~~~~DP~~~~ 68 (82)
T cd02861 2 VPVVFAYRGPEADSVYLAGSFNNWN-AIPMERE------------GDGLWVVTVELRPGRYEYKFVVDGEWVIVDPNAAA 68 (82)
T ss_pred ccEEEEEECCCCCEEEEEeECCCCC-cccCEEC------------CCCcEEEEEeCCCCcEEEEEEECCEEeeCCCCCCc
Confidence 4799999998 69999999999998 5788863 569999999999999999999999998 9999997
Q ss_pred ecc--CCccceEE
Q 009633 517 VTK--GGICNNIL 527 (530)
Q Consensus 517 VtD--gGnvNNVL 527 (530)
..+ .|+.|+||
T Consensus 69 ~~~~~~g~~n~v~ 81 (82)
T cd02861 69 YVDDGFGGKNAVF 81 (82)
T ss_pred eecCCCCccceEc
Confidence 654 47888887
No 3
>KOG1616 consensus Protein involved in Snf1 protein kinase complex assembly [Carbohydrate transport and metabolism]
Probab=99.58 E-value=2.4e-15 Score=149.17 Aligned_cols=83 Identities=39% Similarity=0.567 Sum_probs=75.4
Q ss_pred ceEEEEEEecCCceEEEEeeeCCCCcccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEECCEeeeCCCCCee
Q 009633 438 LEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESV 517 (530)
Q Consensus 438 LrpVTFrW~g~AkeVeVTGSFNNWk~~IpMeKd~ss~~~a~~g~kksGvWStTL~LPPGrYEYKFIVDGEW~~DPdnPtV 517 (530)
..+|+|+|.++++.|+|+|+|++|...++|.+.. +..|.|.+++.|++|.|+|||+|||+|++|++.|++
T Consensus 79 ~~pvvi~W~~gg~~v~v~gS~~nWk~~~~l~~~~----------~~~~~f~~~~dL~~g~~~~kf~vdge~~~s~~~pta 148 (289)
T KOG1616|consen 79 GRPTVIRWSQGGKEVYVDGSFGNWKTKIPLVRSG----------KNVGGFSTILDLPPGEHEYKFIVDGEWRHDPDLPTA 148 (289)
T ss_pred CCceEEEecCCCceEEEecccccccccccceecC----------CCcccceeeEecCCceEEEEEecCCceecCCCCccc
Confidence 4799999999999999999999999999988742 244559999999999999999999999999999999
Q ss_pred cc-CCccceEEEeC
Q 009633 518 TK-GGICNNILRVI 530 (530)
Q Consensus 518 tD-gGnvNNVLeVe 530 (530)
++ .|+.||+|.|.
T Consensus 149 ~d~~Gn~~N~i~v~ 162 (289)
T KOG1616|consen 149 EDSLGNLNNILEVQ 162 (289)
T ss_pred ccccCCcccceEec
Confidence 98 69999999984
No 4
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.22 E-value=6e-11 Score=97.72 Aligned_cols=77 Identities=25% Similarity=0.371 Sum_probs=64.6
Q ss_pred ceEEEEEEecC-CceEEEEeeeCCCCcccccCCCCCCCccccccccCCCcEEEEE-EeCCeeEEEEEEECCEeeeCCCCC
Q 009633 438 LEVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVL-WLYPGTYEIKFIVDGQWKVDPQRE 515 (530)
Q Consensus 438 LrpVTFrW~g~-AkeVeVTGSFNNWk~~IpMeKd~ss~~~a~~g~kksGvWStTL-~LPPGrYEYKFIVDGEW~~DPdnP 515 (530)
...|+|+..++ |++|.|.|+|++|. ..+|.++ ++|.|++++ .|.+|.|+|+|+|||.|+.||.++
T Consensus 5 ~~~v~F~vwAP~A~~V~L~~~~~~~~-~~~m~~~------------~~G~W~~~v~~l~~g~Y~Y~~~vdg~~~~DP~s~ 71 (85)
T cd02858 5 DRTVTFRLFAPKANEVQVRGSWGGAG-SHPMTKD------------EAGVWSVTTGPLAPGIYTYSFLVDGVRVIDPSNP 71 (85)
T ss_pred CCcEEEEEECCCCCEEEEEeecCCCc-cEeCeEC------------CCeEEEEEECCCCCcEEEEEEEECCeEecCCCCC
Confidence 35799999887 99999999999886 4689874 589999998 488999999999999999999999
Q ss_pred eecc-CCccceEE
Q 009633 516 SVTK-GGICNNIL 527 (530)
Q Consensus 516 tVtD-gGnvNNVL 527 (530)
.... .+..-|++
T Consensus 72 ~~~~~~~~~~~~~ 84 (85)
T cd02858 72 TTKPGRQVDTSGV 84 (85)
T ss_pred ceeecccccceee
Confidence 9874 45544443
No 5
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.83 E-value=1.5e-08 Score=78.24 Aligned_cols=70 Identities=30% Similarity=0.478 Sum_probs=60.3
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCCcccccCCCCCCCccccccccCCCcEEEEEEeCC-eeEEEEEEECCEeeeCCCCCe
Q 009633 439 EVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYP-GTYEIKFIVDGQWKVDPQRES 516 (530)
Q Consensus 439 rpVTFrW~g~-AkeVeVTGSFNNWk~~IpMeKd~ss~~~a~~g~kksGvWStTL~LPP-GrYEYKFIVDGEW~~DPdnPt 516 (530)
..|+|++.++ ++.|.|.+.|++|...++|.+. ..|.|.+.+.+.+ |.|.|+|+|||.|.+++..+.
T Consensus 4 ~~v~f~v~ap~a~~v~l~~~~~~~~~~~~~~~~------------~~g~w~~~v~~~~~~~~~Y~~~v~~~~~~~~~~~~ 71 (83)
T cd02688 4 KGVTFTVRGPKAQRVSLAGSFNGDTQLIPMTKV------------EDGYWEVELPLPSPGKYQYKYVLDGGKGPDEGEPK 71 (83)
T ss_pred ccEEEEEECCCCCEEEEEEEECCCCCcccCEEC------------CCceEEEEEcCCCCCCeEEEEEEeCCCCCCCCChh
Confidence 4789999887 8999999999997667888764 5699999999887 999999999999999998866
Q ss_pred eccC
Q 009633 517 VTKG 520 (530)
Q Consensus 517 VtDg 520 (530)
..+.
T Consensus 72 ~~~~ 75 (83)
T cd02688 72 ADEG 75 (83)
T ss_pred hhcC
Confidence 6653
No 6
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=98.39 E-value=9.2e-07 Score=75.85 Aligned_cols=68 Identities=19% Similarity=0.379 Sum_probs=53.3
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCCcc-cccCCCCCCCccccccccCCCcEEEEEEe--------CCe-eEEEEEEE-CC
Q 009633 439 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLWL--------YPG-TYEIKFIV-DG 506 (530)
Q Consensus 439 rpVTFrW~g~-AkeVeVTGSFNNWk~~-IpMeKd~ss~~~a~~g~kksGvWStTL~L--------PPG-rYEYKFIV-DG 506 (530)
..++|+..++ |++|+|+|+||+|+.. .+|.|. +.|+|++++.. +.| .|.|.+.. ||
T Consensus 5 ~g~~FrvwAP~A~~V~l~GdFn~W~~~~~~m~k~------------~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G 72 (99)
T cd02854 5 GGVTYREWAPNAEEVYLIGDFNNWDRNAHPLKKD------------EFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSG 72 (99)
T ss_pred CeEEEEEECCCCCEEEEEccCCCCCCcCcccEEC------------CCCEEEEEECCcccccccCCCCCEEEEEEEeCCC
Confidence 4689999887 9999999999999864 678874 58999999863 455 66666666 78
Q ss_pred Ee--eeCCCCCeec
Q 009633 507 QW--KVDPQRESVT 518 (530)
Q Consensus 507 EW--~~DPdnPtVt 518 (530)
+| ++||-.-.+.
T Consensus 73 ~~~~~~DPyA~~~~ 86 (99)
T cd02854 73 EWIDRIPAWIKYVT 86 (99)
T ss_pred CEEEEcCcceeEEE
Confidence 87 5788777655
No 7
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=98.34 E-value=4.1e-07 Score=72.78 Aligned_cols=58 Identities=28% Similarity=0.472 Sum_probs=46.8
Q ss_pred eEEEEEEecC-CceEEEEeeeCC-CCcc-cccCCCCCCCccccccccCCCcEEEEEE--eCCeeEEEEEEECCE
Q 009633 439 EVVEIQYSGD-GEIVEVAGSFNG-WHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW--LYPGTYEIKFIVDGQ 507 (530)
Q Consensus 439 rpVTFrW~g~-AkeVeVTGSFNN-Wk~~-IpMeKd~ss~~~a~~g~kksGvWStTL~--LPPGrYEYKFIVDGE 507 (530)
..|+|+..++ |+.|.|.|.|++ |... ++|.+. ...|+|++++. +++|.++|+|.|||.
T Consensus 11 ~~~~F~vwaP~A~~V~l~~~~~~~~~~~~~~m~~~-----------~~~G~w~~~~~~~~~~g~~~Y~y~i~~~ 73 (85)
T PF02922_consen 11 GGVTFRVWAPNAKSVELVLYFNGSWPAEEYPMTRK-----------DDDGVWEVTVPGDLPPGGYYYKYRIDGD 73 (85)
T ss_dssp TEEEEEEE-TTESEEEEEEETTTSSEEEEEEEEEE-----------CTTTEEEEEEEGCGTTTT-EEEEEEEET
T ss_pred CEEEEEEECCCCCEEEEEEEeeecCCCceEEeeec-----------CCCCEEEEEEcCCcCCCCEEEEEEEEeC
Confidence 5899999887 999999999999 8654 688831 37899999998 888988888888855
No 8
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=97.75 E-value=0.00016 Score=59.53 Aligned_cols=63 Identities=29% Similarity=0.578 Sum_probs=47.4
Q ss_pred EEEEEEec---CCceEEEEee---eCCCCcc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE-C--C-
Q 009633 440 VVEIQYSG---DGEIVEVAGS---FNGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV-D--G- 506 (530)
Q Consensus 440 pVTFrW~g---~AkeVeVTGS---FNNWk~~--IpMeKd~ss~~~a~~g~kksGvWStTL~LPPG-rYEYKFIV-D--G- 506 (530)
+|+|.... .|+.|+|+|+ +.+|++. ++|... ..+.|++++.||+| .++|||++ + |
T Consensus 2 ~v~F~v~~~t~~ge~l~v~G~~~~lG~W~~~~a~~l~~~------------~~~~W~~~v~l~~~~~~eYKy~~~~~~~~ 69 (95)
T cd05808 2 AVTFNVTATTVWGQNVYVVGNVPELGNWSPANAVALSAA------------TYPVWSGTVDLPAGTAIEYKYIKKDGSGT 69 (95)
T ss_pred eEEEEEEEECCCCCEEEEEeCcHHhCCCChhhCccCCCC------------CCCCEEEEEEeCCCCeEEEEEEEECCCCc
Confidence 56777754 3899999995 7899854 577642 56899999999987 79999996 2 3
Q ss_pred -EeeeCCCC
Q 009633 507 -QWKVDPQR 514 (530)
Q Consensus 507 -EW~~DPdn 514 (530)
.|...++.
T Consensus 70 ~~WE~~~nr 78 (95)
T cd05808 70 VTWESGPNR 78 (95)
T ss_pred EEEecCCCE
Confidence 47666643
No 9
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.66 E-value=0.00016 Score=60.55 Aligned_cols=68 Identities=18% Similarity=0.255 Sum_probs=53.4
Q ss_pred EEEEEEecC-CceEEEEeeeCCCC-----cccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEECCE-----
Q 009633 440 VVEIQYSGD-GEIVEVAGSFNGWH-----HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQ----- 507 (530)
Q Consensus 440 pVTFrW~g~-AkeVeVTGSFNNWk-----~~IpMeKd~ss~~~a~~g~kksGvWStTL~-LPPGrYEYKFIVDGE----- 507 (530)
.++|+..++ |++|.|.. |++|. ..++|.+ ...|+|++.+. +.+|.+ |+|.|+|.
T Consensus 9 ~~~F~vwAP~A~~V~L~l-~~~~~~~~~~~~~~m~~------------~~~gvw~~~v~~~~~g~~-Y~y~i~~~~~~~~ 74 (100)
T cd02860 9 KTTFRLWAPTAQSVKLLL-YDKDDQDKVLETVQMKR------------GENGVWSVTLDGDLEGYY-YLYEVKVYKGETN 74 (100)
T ss_pred CEEEEEECCCCcEEEEEE-EcCCCCCCcceeEeeec------------CCCCEEEEEeCCccCCcE-EEEEEEEeceEEE
Confidence 588988887 99999988 88886 3467875 36899999986 667765 88888875
Q ss_pred eeeCCCCCeeccCC
Q 009633 508 WKVDPQRESVTKGG 521 (530)
Q Consensus 508 W~~DPdnPtVtDgG 521 (530)
...||-...+...|
T Consensus 75 ~~~DPyA~~~~~~~ 88 (100)
T cd02860 75 EVVDPYAKALSANG 88 (100)
T ss_pred EEcCcccEeEeeCC
Confidence 67899888776533
No 10
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=97.59 E-value=0.00044 Score=57.00 Aligned_cols=77 Identities=26% Similarity=0.352 Sum_probs=51.5
Q ss_pred EEEEEEecC-CceEEEEeeeCCCCcc-cccCCCCCCCccccccccCCCcEEEEEE-eCCe-eEEEEEEEC-CEe--eeCC
Q 009633 440 VVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-TYEIKFIVD-GQW--KVDP 512 (530)
Q Consensus 440 pVTFrW~g~-AkeVeVTGSFNNWk~~-IpMeKd~ss~~~a~~g~kksGvWStTL~-LPPG-rYEYKFIVD-GEW--~~DP 512 (530)
.++|+...+ |+.|.|.|+|++|... .+|.+. ...|.|.+++. +++| .|.|++..+ |.| +.||
T Consensus 22 ~~~frv~aP~A~~V~l~~~~~~~~~~~~~m~~~-----------~~~G~w~~~v~~~~~~~~Y~~~v~~~~g~~~~~~DP 90 (106)
T cd02855 22 GVRFAVWAPNARRVSVVGDFNGWDGRRHPMRRR-----------GDSGVWELFIPGLGEGELYKYEILGADGHLPLKADP 90 (106)
T ss_pred CEEEEEECCCCCEEEEEEECCCCCCcceecEEC-----------CCCCEEEEEECCCCCCCEEEEEEECCCCCEEEeeCC
Confidence 478888776 9999999999999643 578764 24899999885 6666 455554444 333 4577
Q ss_pred CCCeeccCCccceEE
Q 009633 513 QRESVTKGGICNNIL 527 (530)
Q Consensus 513 dnPtVtDgGnvNNVL 527 (530)
-..-++.....++|+
T Consensus 91 Ya~~~~~~~~~~~~~ 105 (106)
T cd02855 91 YAFYSELRPGTASIV 105 (106)
T ss_pred CceeeEeCCCCeEEe
Confidence 665554433355553
No 11
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=97.47 E-value=0.00032 Score=58.48 Aligned_cols=58 Identities=22% Similarity=0.427 Sum_probs=45.4
Q ss_pred eEEEEEEec---CCceEEEEeeeC---CCCc--ccccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE
Q 009633 439 EVVEIQYSG---DGEIVEVAGSFN---GWHH--RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV 504 (530)
Q Consensus 439 rpVTFrW~g---~AkeVeVTGSFN---NWk~--~IpMeKd~ss~~~a~~g~kksGvWStTL~LPPG-rYEYKFIV 504 (530)
+.|+|+... .++.|+|+|+.. +|++ .++|.... +......|++++.||.| .++|||+|
T Consensus 2 v~V~F~v~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~--------~~~~~~~W~~~v~lp~~~~~eYKy~i 68 (96)
T PF00686_consen 2 VSVTFRVNYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNE--------GTENYPIWSATVDLPAGTPFEYKYVI 68 (96)
T ss_dssp EEEEEEESE---TTEEEEEEESSGGGTTTSGGGSBESEBES--------SSSTTTSEEEEEEEETTSEEEEEEEE
T ss_pred EEEEEEEEeECCCCCEEEEEECcHHhCCCChHhcccccccc--------CCCCCCeEEEEEECcCCCEEEEEEEE
Confidence 578888854 489999999996 8996 36776531 01246899999999988 79999998
No 12
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=97.44 E-value=0.0002 Score=79.04 Aligned_cols=68 Identities=25% Similarity=0.451 Sum_probs=53.9
Q ss_pred CceEEEEEEecC-CceEEEEeeeCCCCcc-cccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEECCE-----e
Q 009633 437 GLEVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQ-----W 508 (530)
Q Consensus 437 gLrpVTFrW~g~-AkeVeVTGSFNNWk~~-IpMeKd~ss~~~a~~g~kksGvWStTL~-LPPGrYEYKFIVDGE-----W 508 (530)
|...|+|+..++ ++.|.|.|+||+|+.. .+|... ++.|.|.+++. ++|| +.|||.|++. +
T Consensus 34 g~~~~~F~vWAP~a~~V~vvgdfn~w~~~~~~~~~~-----------~~~G~we~~vp~~~~G-~~Yky~l~~~~g~~~~ 101 (628)
T COG0296 34 GVSGVRFRVWAPNARRVSLVGDFNDWDGRRMPMRDR-----------KESGIWELFVPGAPPG-TRYKYELIDPSGQLRL 101 (628)
T ss_pred CCCceEEEEECCCCCeEEEEeecCCccceecccccC-----------CCCceEEEeccCCCCC-CeEEEEEeCCCCceee
Confidence 566899999887 9999999999999864 334321 46799999998 9999 9999998754 3
Q ss_pred eeCCCCCe
Q 009633 509 KVDPQRES 516 (530)
Q Consensus 509 ~~DPdnPt 516 (530)
+.||-.-.
T Consensus 102 ~~DP~a~~ 109 (628)
T COG0296 102 KADPYARR 109 (628)
T ss_pred ccCchhhc
Confidence 66765543
No 13
>PRK12568 glycogen branching enzyme; Provisional
Probab=97.37 E-value=0.00061 Score=76.42 Aligned_cols=69 Identities=26% Similarity=0.445 Sum_probs=53.6
Q ss_pred CceEEEEEEecC-CceEEEEeeeCCCCcc-cccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEE---CCEee-
Q 009633 437 GLEVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIV---DGQWK- 509 (530)
Q Consensus 437 gLrpVTFrW~g~-AkeVeVTGSFNNWk~~-IpMeKd~ss~~~a~~g~kksGvWStTL~-LPPGrYEYKFIV---DGEW~- 509 (530)
|..-|+|+..++ |++|.|+|+||+|..+ .+|.+. ..|+|++.+. +.+|. .|||.| ||.+.
T Consensus 136 g~~Gv~FaVWAPnA~~VsVvGDFN~Wdg~~~pM~~~------------~~GVWelfipg~~~G~-~YKYeI~~~~G~~~~ 202 (730)
T PRK12568 136 EVPGVRFAVWAPHAQRVAVVGDFNGWDVRRHPMRQR------------IGGFWELFLPRVEAGA-RYKYAITAADGRVLL 202 (730)
T ss_pred CCCcEEEEEECCCCCEEEEEEecCCCCccceecccC------------CCCEEEEEECCCCCCC-EEEEEEEcCCCeEee
Confidence 445799999887 9999999999999865 578752 6899999984 77883 577777 78764
Q ss_pred -eCCCCCeec
Q 009633 510 -VDPQRESVT 518 (530)
Q Consensus 510 -~DPdnPtVt 518 (530)
.||-.-...
T Consensus 203 k~DPYA~~~e 212 (730)
T PRK12568 203 KADPVARQTE 212 (730)
T ss_pred cCCCcceEee
Confidence 688765544
No 14
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.31 E-value=0.00099 Score=56.36 Aligned_cols=53 Identities=17% Similarity=0.278 Sum_probs=42.3
Q ss_pred EEEEEEecC-CceEEEEeeeCCCC--cccccCCCCCCCccccccccCCCcEEEEE-EeCCeeEEEEEEECC
Q 009633 440 VVEIQYSGD-GEIVEVAGSFNGWH--HRIKMDPLPSSSIIEPIRSRKSRLWSTVL-WLYPGTYEIKFIVDG 506 (530)
Q Consensus 440 pVTFrW~g~-AkeVeVTGSFNNWk--~~IpMeKd~ss~~~a~~g~kksGvWStTL-~LPPGrYEYKFIVDG 506 (530)
.++|+..++ |+.|.|.. |++|. ..++|.+. ..|+|.+.+ .+.+|. .|+|.|||
T Consensus 10 g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~------------~~GvW~~~v~~~~~g~-~Y~y~i~g 66 (103)
T cd02856 10 GCNFAVHSENATRIELCL-FDEDGSETRLPLTEE------------YGGVWHGFLPGIKAGQ-RYGFRVHG 66 (103)
T ss_pred CeEEEEECCCCCEEEEEE-EeCCCCEEEEEcccc------------cCCEEEEEECCCCCCC-EEEEEECC
Confidence 478988887 99999998 66664 34678753 579999998 477776 79999999
No 15
>PRK12313 glycogen branching enzyme; Provisional
Probab=97.24 E-value=0.00095 Score=72.63 Aligned_cols=68 Identities=22% Similarity=0.316 Sum_probs=51.0
Q ss_pred ceEEEEEEecC-CceEEEEeeeCCCCcc-cccCCCCCCCccccccccCCCcEEEEEE-eCCe-eEEEEEEE-CCEe--ee
Q 009633 438 LEVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-TYEIKFIV-DGQW--KV 510 (530)
Q Consensus 438 LrpVTFrW~g~-AkeVeVTGSFNNWk~~-IpMeKd~ss~~~a~~g~kksGvWStTL~-LPPG-rYEYKFIV-DGEW--~~ 510 (530)
...|+|+..++ |++|+|.|+|++|... .+|.+. ..|+|.+++. +++| .|.|++.+ ||.| +.
T Consensus 37 ~~gv~Frv~AP~A~~V~v~gdfn~w~~~~~~m~~~------------~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~ 104 (633)
T PRK12313 37 EKGTYFRVWAPNAQAVSVVGDFNDWRGNAHPLVRR------------ESGVWEGFIPGAKEGQLYKYHISRQDGYQVEKI 104 (633)
T ss_pred cccEEEEEECCCCCEEEEEEecCCCCccccccccc------------CCCEEEEEeCCCCCCCEEEEEEECCCCeEEecC
Confidence 34799999887 9999999999999865 578763 5799999997 5555 67777654 5776 45
Q ss_pred CCCCCee
Q 009633 511 DPQRESV 517 (530)
Q Consensus 511 DPdnPtV 517 (530)
||-....
T Consensus 105 DPya~~~ 111 (633)
T PRK12313 105 DPFAFYF 111 (633)
T ss_pred CCceEEE
Confidence 6655543
No 16
>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=97.19 E-value=0.0025 Score=53.66 Aligned_cols=67 Identities=27% Similarity=0.447 Sum_probs=50.4
Q ss_pred eEEEEEEec---CCceEEEEeee---CCCCcccccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---CC--
Q 009633 439 EVVEIQYSG---DGEIVEVAGSF---NGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG-- 506 (530)
Q Consensus 439 rpVTFrW~g---~AkeVeVTGSF---NNWk~~IpMeKd~ss~~~a~~g~kksGvWStTL~LPPG-rYEYKFIV---DG-- 506 (530)
..|+|+.+. .|+.++|+|+- .+|++..+|.. ..+.|.+.+.||+| .++|||++ ||
T Consensus 2 ~~v~F~~~~~~~~Gq~l~v~G~~~~LG~W~~~~~l~~-------------~~~~W~~~~~l~~~~~ieyKy~~~~~~~~v 68 (92)
T cd05818 2 VKLQVRLDHQVKFGEHVAILGSTKELGSWKKKVPMNW-------------TENGWVCDLELDGGELVEYKFVIVKRDGSV 68 (92)
T ss_pred EEEEEEEEEEcCCCCEEEEEeChHHHCCCCCCCcccc-------------CCCCEEEEEEeCCCCcEEEEEEEEcCCCCE
Confidence 467777766 38999999987 59997777763 24579999999987 79999999 44
Q ss_pred EeeeCCCCCeec
Q 009633 507 QWKVDPQRESVT 518 (530)
Q Consensus 507 EW~~DPdnPtVt 518 (530)
.|...++.-...
T Consensus 69 ~WE~g~Nr~~~~ 80 (92)
T cd05818 69 IWEGGNNRVLEL 80 (92)
T ss_pred EEEeCCCEEEEc
Confidence 486666554433
No 17
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=97.10 E-value=0.002 Score=72.69 Aligned_cols=63 Identities=17% Similarity=0.405 Sum_probs=47.4
Q ss_pred EEEEEEecC-CceEEEEeeeCCCCcc-cccCCCCCCCccccccccCCCcEEEEEE-------eCCeeEEEEEEEC---CE
Q 009633 440 VVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-------LYPGTYEIKFIVD---GQ 507 (530)
Q Consensus 440 pVTFrW~g~-AkeVeVTGSFNNWk~~-IpMeKd~ss~~~a~~g~kksGvWStTL~-------LPPGrYEYKFIVD---GE 507 (530)
.++|+..++ |+.|+|+|+||+|... .+|.+. ..|+|++.+. ++.|. .|||.|. |.
T Consensus 115 g~~FrvWAP~A~~V~LvGdFN~W~~~~~~M~~~------------~~GvWe~~ip~~~g~~~~~~G~-~Yky~i~~~~g~ 181 (758)
T PLN02447 115 GITYREWAPGAKAAALIGDFNNWNPNAHWMTKN------------EFGVWEIFLPDADGSPAIPHGS-RVKIRMETPDGR 181 (758)
T ss_pred CEEEEEECCCCCEEEEEEecCCCCCCccCceeC------------CCCEEEEEECCccccccCCCCC-EEEEEEEeCCCc
Confidence 689999887 9999999999999864 578763 6799999985 44553 6777774 54
Q ss_pred e--eeCCCCC
Q 009633 508 W--KVDPQRE 515 (530)
Q Consensus 508 W--~~DPdnP 515 (530)
| ++||-..
T Consensus 182 ~~~r~dpya~ 191 (758)
T PLN02447 182 WVDRIPAWIK 191 (758)
T ss_pred EEeecCchHh
Confidence 3 5676543
No 18
>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1
Probab=97.08 E-value=0.0036 Score=53.11 Aligned_cols=70 Identities=23% Similarity=0.348 Sum_probs=48.8
Q ss_pred ceEEEEEEec----CCceEEEEe---eeCCCCccc-ccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---C
Q 009633 438 LEVVEIQYSG----DGEIVEVAG---SFNGWHHRI-KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---D 505 (530)
Q Consensus 438 LrpVTFrW~g----~AkeVeVTG---SFNNWk~~I-pMeKd~ss~~~a~~g~kksGvWStTL~LPPG-rYEYKFIV---D 505 (530)
.++|+|.... .++.|+|+| .+.+|+... +|..-. ....+.|.+++.||+| .++|||++ |
T Consensus 2 ~v~v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~~~~~~~~---------~~~~~~W~~~~~lp~~~~veyKyv~~~~~ 72 (99)
T cd05809 2 PVPQTFVVKNVPTTIGETVYITGSRAELGNWDTKQYPIQLYY---------NSHSNDWRGTVHLPAGRNIEFKAIKKSKD 72 (99)
T ss_pred ceEEEEEEcccccCCCCEEEEEeChHHhCCCChhhhhhcccc---------CCCCCCEEEEEEecCCCcEEEEEEEEcCC
Confidence 4688999843 389999999 567998542 232210 0245789999999998 79999999 4
Q ss_pred C---EeeeCCCCCe
Q 009633 506 G---QWKVDPQRES 516 (530)
Q Consensus 506 G---EW~~DPdnPt 516 (530)
| .|...++.-.
T Consensus 73 ~~~~~WE~g~nr~~ 86 (99)
T cd05809 73 GTNKSWQGGQQSWY 86 (99)
T ss_pred CCeeEEecCCCeeE
Confidence 4 3766555433
No 19
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=97.08 E-value=0.0019 Score=56.48 Aligned_cols=55 Identities=24% Similarity=0.558 Sum_probs=43.9
Q ss_pred EEEEEEec----CCceEEEEee---eCCCCcc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE
Q 009633 440 VVEIQYSG----DGEIVEVAGS---FNGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV 504 (530)
Q Consensus 440 pVTFrW~g----~AkeVeVTGS---FNNWk~~--IpMeKd~ss~~~a~~g~kksGvWStTL~LPPG-rYEYKFIV 504 (530)
.|+|+... .++.|+|+|+ +.+|++. ++|.... ...+.|++++.||++ .++|||+|
T Consensus 2 ~v~F~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~l~~~~----------~~~~~W~~~v~lp~~~~veYkY~~ 66 (120)
T cd05814 2 RVTFRVFASELAPGEVVAVVGSLPVLGNWQPEKAVPLEKED----------DDCNLWKASIELPRGVDFQYRYFV 66 (120)
T ss_pred eEEEEEeeccCCCCCEEEEEeChHHhCCCCHHhCeeCccCC----------CcCCccEEEEEECCCCeEEEEEEE
Confidence 46777765 3899999999 8999844 5776531 145789999999988 89999999
No 20
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=96.95 E-value=0.0026 Score=54.90 Aligned_cols=59 Identities=25% Similarity=0.415 Sum_probs=44.3
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCC---c--ccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEECCEe
Q 009633 439 EVVEIQYSGD-GEIVEVAGSFNGWH---H--RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQW 508 (530)
Q Consensus 439 rpVTFrW~g~-AkeVeVTGSFNNWk---~--~IpMeKd~ss~~~a~~g~kksGvWStTL~-LPPGrYEYKFIVDGEW 508 (530)
..++|+..++ |+.|.|.. |++|. + .++|.+.. .+..|+|.+.+. +.+|. .|+|.|+|.|
T Consensus 7 ~g~~F~vwAP~A~~V~L~l-f~~~~~~~~~~~~~m~~~~---------~~~~gvW~~~v~~~~~g~-~Y~y~v~g~~ 72 (119)
T cd02852 7 GGVNFSVYSSNATAVELLL-FDPGDGDEPALEIELDPSV---------NRTGDVWHVFVEGLKPGQ-LYGYRVDGPF 72 (119)
T ss_pred CCEEEEEECCCCCEEEEEE-EeCCCCCCceEEEeCcCcc---------cccCCEEEEEECCCCCCC-EEEEEECCCC
Confidence 3588988887 99999998 88886 2 35676431 124699999984 78886 6999999854
No 21
>PRK14705 glycogen branching enzyme; Provisional
Probab=96.92 E-value=0.0027 Score=74.83 Aligned_cols=67 Identities=33% Similarity=0.574 Sum_probs=51.5
Q ss_pred CceEEEEEEecC-CceEEEEeeeCCCCcc-cccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEC---CEe--
Q 009633 437 GLEVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD---GQW-- 508 (530)
Q Consensus 437 gLrpVTFrW~g~-AkeVeVTGSFNNWk~~-IpMeKd~ss~~~a~~g~kksGvWStTL~-LPPGrYEYKFIVD---GEW-- 508 (530)
+..-|.|+..++ |+.|.|.|+||+|..+ .+|.+. ...|+|++.+. +.+|. .|||.|+ |.|
T Consensus 636 ~~~Gv~F~VWAP~A~~V~vvgdFN~w~~~~~~m~~~-----------~~~GvW~~fipg~~~G~-~Yky~i~~~~g~~~~ 703 (1224)
T PRK14705 636 DVDGVSFAVWAPNAQAVRVKGDFNGWDGREHSMRSL-----------GSSGVWELFIPGVVAGA-CYKFEILTKAGQWVE 703 (1224)
T ss_pred CCCeEEEEEECCCCCEEEEEEEecCCCCCcccceEC-----------CCCCEEEEEECCCCCCC-EEEEEEEcCCCcEEe
Confidence 455789999887 9999999999999865 467753 35799999984 88885 5888885 555
Q ss_pred eeCCCCC
Q 009633 509 KVDPQRE 515 (530)
Q Consensus 509 ~~DPdnP 515 (530)
+.||-.-
T Consensus 704 k~DPyA~ 710 (1224)
T PRK14705 704 KADPLAF 710 (1224)
T ss_pred cCCcccc
Confidence 4566553
No 22
>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco
Probab=96.91 E-value=0.0091 Score=51.22 Aligned_cols=70 Identities=23% Similarity=0.339 Sum_probs=51.6
Q ss_pred ceEEEEEEec-----CCceEEEEeee---CCCCccc-----ccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEE
Q 009633 438 LEVVEIQYSG-----DGEIVEVAGSF---NGWHHRI-----KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFI 503 (530)
Q Consensus 438 LrpVTFrW~g-----~AkeVeVTGSF---NNWk~~I-----pMeKd~ss~~~a~~g~kksGvWStTL~LPPG-rYEYKFI 503 (530)
.++|+|+... .|+.|+|+|+- .+|+... +|.. .....|.+++.||.| ..+|||+
T Consensus 2 ~~~v~f~~~~~~~t~~Ge~l~vvGs~~~LG~W~~~~~~a~~~l~~------------~~~~~W~~~~~lp~~~~veyK~v 69 (103)
T cd05820 2 QIPVIFTVQNTPETAPGEFLYLTGSVPELGNWSTSTDQAVGPLLC------------PNWPDWFVVASVPAGTYIEFKFL 69 (103)
T ss_pred cccEEEEEeCCcCcCCCCEEEEEECcHHhCCCChhcccccccccc------------CCCCCEEEEEEcCCCCcEEEEEE
Confidence 3689999863 38999999987 4898632 4542 245789999999998 7999999
Q ss_pred E---CC--EeeeCCCCCeecc
Q 009633 504 V---DG--QWKVDPQRESVTK 519 (530)
Q Consensus 504 V---DG--EW~~DPdnPtVtD 519 (530)
+ || .|...++.-...+
T Consensus 70 ~~~~~g~v~WE~g~Nr~~~~p 90 (103)
T cd05820 70 KAPADGTGTWEGGSNHAYTTP 90 (103)
T ss_pred EECCCCCEEEEeCCCEeEECC
Confidence 9 45 3877666554444
No 23
>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also
Probab=96.89 E-value=0.01 Score=50.32 Aligned_cols=74 Identities=27% Similarity=0.554 Sum_probs=50.7
Q ss_pred ceEEEEEEec---CCceEEEEeee---CCCCcc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE-C--
Q 009633 438 LEVVEIQYSG---DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV-D-- 505 (530)
Q Consensus 438 LrpVTFrW~g---~AkeVeVTGSF---NNWk~~--IpMeKd~ss~~~a~~g~kksGvWStTL~LPPG-rYEYKFIV-D-- 505 (530)
.+.|+|.... .|+.|+|+|+- .+|+.. ++|.... .....+.|.+++.||+| .++|||+| +
T Consensus 6 ~v~V~F~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~--------~t~~~~~W~~~v~lp~~~~veYKy~~~~~~ 77 (106)
T cd05811 6 TVAVTFNERVTTSYGENIKIVGSIPQLGNWDTSSAVALSASQ--------YTSSNPLWSVTIPLPAGTSFEYKFIRKESD 77 (106)
T ss_pred EEEEEEEEeeEcCCCCeEEEEeCcHHHCCCChhhCccccccc--------CccCCCcEEEEEEeCCCCcEEEEEEEEcCC
Confidence 3678888765 38999999986 489864 5675320 01245789999999988 59999996 2
Q ss_pred C--EeeeCCCCCeecc
Q 009633 506 G--QWKVDPQRESVTK 519 (530)
Q Consensus 506 G--EW~~DPdnPtVtD 519 (530)
| .|...++.-...+
T Consensus 78 ~~~~WE~~~nr~~~~~ 93 (106)
T cd05811 78 GSVTWESDPNRSYTVP 93 (106)
T ss_pred CcEEEecCCCeEEECC
Confidence 3 3866664433333
No 24
>PRK14706 glycogen branching enzyme; Provisional
Probab=96.86 E-value=0.003 Score=69.69 Aligned_cols=68 Identities=31% Similarity=0.453 Sum_probs=51.5
Q ss_pred ceEEEEEEecC-CceEEEEeeeCCCCcc-cccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEECC---Ee--e
Q 009633 438 LEVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDG---QW--K 509 (530)
Q Consensus 438 LrpVTFrW~g~-AkeVeVTGSFNNWk~~-IpMeKd~ss~~~a~~g~kksGvWStTL~-LPPGrYEYKFIVDG---EW--~ 509 (530)
...|+|+..++ |++|.|.|+||+|... .+|.+. ..|+|.+.+. +.+| ..|||.|+| .+ +
T Consensus 37 ~~Gv~FrvwAP~A~~V~Lvgdfn~w~~~~~pM~~~------------~~GvW~~~vpg~~~g-~~Yky~I~~~~g~~~~~ 103 (639)
T PRK14706 37 VEGVRFAVWAPGAQHVSVVGDFNDWNGFDHPMQRL------------DFGFWGAFVPGARPG-QRYKFRVTGAAGQTVDK 103 (639)
T ss_pred cccEEEEEECCCCCEEEEEEecCCccccccccccc------------CCCEEEEEECCCCCC-CEEEEEEECCCCCEEec
Confidence 34689999887 9999999999999864 578764 4699999985 5566 468888864 44 6
Q ss_pred eCCCCCeec
Q 009633 510 VDPQRESVT 518 (530)
Q Consensus 510 ~DPdnPtVt 518 (530)
.||-.-...
T Consensus 104 ~DPYa~~~~ 112 (639)
T PRK14706 104 MDPYGSFFE 112 (639)
T ss_pred cCcceEEEe
Confidence 777665544
No 25
>PRK05402 glycogen branching enzyme; Provisional
Probab=96.80 E-value=0.0042 Score=69.02 Aligned_cols=67 Identities=28% Similarity=0.466 Sum_probs=50.1
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCCcc-cccCCCCCCCccccccccCCCcEEEEEE-eCCe-eEEEEEEEC-CEe--eeC
Q 009633 439 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-TYEIKFIVD-GQW--KVD 511 (530)
Q Consensus 439 rpVTFrW~g~-AkeVeVTGSFNNWk~~-IpMeKd~ss~~~a~~g~kksGvWStTL~-LPPG-rYEYKFIVD-GEW--~~D 511 (530)
..|+|+..++ |++|.|.|+|++|... .+|.+. ...|+|.+++. +++| .|.|++..+ |.| +.|
T Consensus 131 ~gv~FrvwAP~A~~V~l~gdfn~w~~~~~~m~~~-----------~~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~D 199 (726)
T PRK05402 131 SGVRFAVWAPNARRVSVVGDFNGWDGRRHPMRLR-----------GESGVWELFIPGLGEGELYKFEILTADGELLLKAD 199 (726)
T ss_pred CcEEEEEECCCCCEEEEEEEcCCCCCccccceEc-----------CCCCEEEEEeCCCCCCCEEEEEEeCCCCcEeecCC
Confidence 4689999887 9999999999999754 578763 26799999984 6777 777777665 455 445
Q ss_pred CCCCe
Q 009633 512 PQRES 516 (530)
Q Consensus 512 PdnPt 516 (530)
|-.-.
T Consensus 200 PYa~~ 204 (726)
T PRK05402 200 PYAFA 204 (726)
T ss_pred CceEE
Confidence 54443
No 26
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=96.70 E-value=0.0079 Score=49.34 Aligned_cols=72 Identities=14% Similarity=0.069 Sum_probs=51.3
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCCcccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEC-CEeeeCCCCC
Q 009633 439 EVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD-GQWKVDPQRE 515 (530)
Q Consensus 439 rpVTFrW~g~-AkeVeVTGSFNNWk~~IpMeKd~ss~~~a~~g~kksGvWStTL~-LPPGrYEYKFIVD-GEW~~DPdnP 515 (530)
..++|+..++ |++|.|.... |. .++|.+. ..|.|++++. + +|. .|+|.|+ |..+.||...
T Consensus 8 ~~~~F~vwAP~A~~V~l~l~~--~~-~~~m~~~------------~~G~W~~~v~~~-~g~-~Y~y~v~~~~~~~DP~a~ 70 (85)
T cd02853 8 GGTRFRLWAPDAKRVTLRLDD--GE-EIPMQRD------------GDGWFEAEVPGA-AGT-RYRYRLDDGTPVPDPASR 70 (85)
T ss_pred CCEEEEEeCCCCCEEEEEecC--CC-cccCccC------------CCcEEEEEeCCC-CCC-eEEEEECCCcCCCCCccc
Confidence 3588999887 9999999643 53 5788763 6799999985 6 775 4777777 5688899988
Q ss_pred eeccCCccceEE
Q 009633 516 SVTKGGICNNIL 527 (530)
Q Consensus 516 tVtDgGnvNNVL 527 (530)
....+.+-++++
T Consensus 71 ~~~~~~~~~s~v 82 (85)
T cd02853 71 FQPEGVHGPSQV 82 (85)
T ss_pred cCCCCCCCCeEe
Confidence 754433324443
No 27
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.69 E-value=0.006 Score=51.84 Aligned_cols=52 Identities=23% Similarity=0.416 Sum_probs=39.7
Q ss_pred EEEEEec---CCceEEEEee---eCCCCcc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE
Q 009633 441 VEIQYSG---DGEIVEVAGS---FNGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV 504 (530)
Q Consensus 441 VTFrW~g---~AkeVeVTGS---FNNWk~~--IpMeKd~ss~~~a~~g~kksGvWStTL~LPPG-rYEYKFIV 504 (530)
|+|+... .|+.|+|+|+ ..+|+.. ++|.. .....|++++.||+| .++|||+|
T Consensus 2 v~F~i~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~m~~------------~~~~~W~~~v~lp~~~~veYKY~i 62 (100)
T cd05817 2 VTFKIHYPTQFGEAVYISGNCNQLGNWNPSKAKRMQW------------NEGDLWTVDVGIPESVYIEYKYFV 62 (100)
T ss_pred EEEEEEEEcCCCCEEEEEeCcHHHCCCCccccCcccC------------CCCCCEEEEEEECCCCcEEEEEEE
Confidence 4455543 3899999999 4689854 56754 245789999999987 69999998
No 28
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=96.68 E-value=0.0041 Score=67.04 Aligned_cols=70 Identities=14% Similarity=0.116 Sum_probs=53.0
Q ss_pred EEEEEecC-CceEEEEeeeCCCCcccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEECC-EeeeCCCCCee
Q 009633 441 VEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDG-QWKVDPQRESV 517 (530)
Q Consensus 441 VTFrW~g~-AkeVeVTGSFNNWk~~IpMeKd~ss~~~a~~g~kksGvWStTL~-LPPGrYEYKFIVDG-EW~~DPdnPtV 517 (530)
|+|+..++ |++|.|.+ ++ ..++|.+. ..|+|++++. +.+| |.|+|.||| .-+.||-+...
T Consensus 1 v~FrlwAP~A~~V~L~l---~~-~~~~m~k~------------~~GvW~~~v~~~~~G-~~Y~y~v~g~~~v~DPya~~~ 63 (542)
T TIGR02402 1 VRFRLWAPTAASVKLRL---NG-ALHAMQRL------------GDGWFEITVPPVGPG-DRYGYVLDDGTPVPDPASRRQ 63 (542)
T ss_pred CEEEEECCCCCEEEEEe---CC-CEEeCeEC------------CCCEEEEEECCCCCC-CEEEEEEeeeEEecCcccccc
Confidence 57888887 99999997 23 35789864 5799999996 7888 789999999 67889998875
Q ss_pred ccCCccceEE
Q 009633 518 TKGGICNNIL 527 (530)
Q Consensus 518 tDgGnvNNVL 527 (530)
..+.+..++|
T Consensus 64 ~~~~~~~S~V 73 (542)
T TIGR02402 64 PDGVHGPSQV 73 (542)
T ss_pred ccCCCCCeEE
Confidence 5432223444
No 29
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=96.60 E-value=0.0065 Score=66.30 Aligned_cols=68 Identities=24% Similarity=0.324 Sum_probs=51.0
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCCcc-cccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEC---CE--eee
Q 009633 439 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD---GQ--WKV 510 (530)
Q Consensus 439 rpVTFrW~g~-AkeVeVTGSFNNWk~~-IpMeKd~ss~~~a~~g~kksGvWStTL~-LPPGrYEYKFIVD---GE--W~~ 510 (530)
..|+|+..++ |+.|.|.|+|++|... .+|.+. ...|+|++.+. +.+|. .|+|.|+ |. ++.
T Consensus 28 ~g~~FrvwAP~A~~V~L~~dfn~w~~~~~~m~~~-----------~~~Gvw~~~i~~~~~g~-~Y~y~v~~~~g~~~~~~ 95 (613)
T TIGR01515 28 SGTRFCVWAPNAREVRVAGDFNYWDGREHPMRRR-----------NDNGIWELFIPGIGEGE-LYKYEIVTNNGEIRLKA 95 (613)
T ss_pred CcEEEEEECCCCCEEEEEEecCCCCCceecceEe-----------cCCCEEEEEeCCCCCCC-EEEEEEECCCCcEEEeC
Confidence 4688999887 9999999999999754 467653 24799999885 56675 5888884 55 467
Q ss_pred CCCCCeec
Q 009633 511 DPQRESVT 518 (530)
Q Consensus 511 DPdnPtVt 518 (530)
||-.-...
T Consensus 96 DPYA~~~~ 103 (613)
T TIGR01515 96 DPYAFYAE 103 (613)
T ss_pred CCCEeeec
Confidence 88765444
No 30
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.56 E-value=0.011 Score=49.46 Aligned_cols=53 Identities=28% Similarity=0.487 Sum_probs=41.8
Q ss_pred EEEEEEec----CCceEEEEeee---CCCCcccccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE
Q 009633 440 VVEIQYSG----DGEIVEVAGSF---NGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV 504 (530)
Q Consensus 440 pVTFrW~g----~AkeVeVTGSF---NNWk~~IpMeKd~ss~~~a~~g~kksGvWStTL~LPPG-rYEYKFIV 504 (530)
+|+|+... +++.|+|+|+- .+|+...+|.. ...+.|.+++.||+| .++|||++
T Consensus 2 ~v~F~v~~~t~~~~e~l~v~G~~~~LG~W~~~~~l~~------------~~~~~W~~~v~lp~~~~ieYky~~ 62 (95)
T cd05813 2 NVTFRVHYITHSDAQLVAVTGDHEELGSWHSYIPLQY------------VKDGFWSASVSLPVDTHVEWKFVL 62 (95)
T ss_pred eEEEEEEeeeCCCCeEEEEEcChHHHCCCCccccCcC------------CCCCCEEEEEEecCCCcEEEEEEE
Confidence 57777754 35778999986 58997778864 245789999999988 59999998
No 31
>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.55 E-value=0.011 Score=48.40 Aligned_cols=53 Identities=26% Similarity=0.491 Sum_probs=40.4
Q ss_pred EEEEEec---CCceEEEEeee---CCCCcc--cccCCCCCCCccccccccCCCcEEEEEEeCC--e-eEEEEEEE
Q 009633 441 VEIQYSG---DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYP--G-TYEIKFIV 504 (530)
Q Consensus 441 VTFrW~g---~AkeVeVTGSF---NNWk~~--IpMeKd~ss~~~a~~g~kksGvWStTL~LPP--G-rYEYKFIV 504 (530)
|+|+... .|+.|+|+|+. .+|++. ++|... ...+.|.+++.||+ | .++|||++
T Consensus 2 v~f~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~-----------~~~~~W~~~v~~~~~~~~~~~yKy~~ 65 (96)
T cd05467 2 VRFQVRCTTQFGQSVYVVGSHPELGNWDPAKALRLNTS-----------NSYPLWTGEIPLPAPEGQVIEYKYVI 65 (96)
T ss_pred EEEEEEEECCCCCEEEEEeCcHHhCCcChhcCccccCC-----------CCCCcEEEEEEecCCCCCeEEEEEEE
Confidence 4555543 48999999998 489853 567642 12689999999998 7 79999998
No 32
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=96.54 E-value=0.028 Score=47.61 Aligned_cols=66 Identities=26% Similarity=0.571 Sum_probs=47.1
Q ss_pred EEEEEec----CCceEEEEeee---CCCCcc--cccCCCCCCCccccccccCCCcEEEEEEeCCe--eEEEEEEE--C--
Q 009633 441 VEIQYSG----DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG--TYEIKFIV--D-- 505 (530)
Q Consensus 441 VTFrW~g----~AkeVeVTGSF---NNWk~~--IpMeKd~ss~~~a~~g~kksGvWStTL~LPPG--rYEYKFIV--D-- 505 (530)
|+|+... .++.|+|+|+- .+|++. ++|... ....|.+++.+|++ .++|||++ +
T Consensus 2 v~f~v~~~~~~~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~------------~~~~W~~~v~~p~~~~~ieYKyvi~~~~~ 69 (99)
T cd05816 2 VQFKILCPYVPKGQSVYVTGSSPELGNWDPQKALKLSDV------------GFPIWEADIDISKDSFPFEYKYIIANKDS 69 (99)
T ss_pred EEEEEEcCccCCCCEEEEEEChHHhCCCCccccccCCCC------------CCCcEEEEEEeCCCCccEEEEEEEEeCCC
Confidence 5666644 38999999986 589854 567642 46789999999986 58999998 2
Q ss_pred C--EeeeCCCCCeec
Q 009633 506 G--QWKVDPQRESVT 518 (530)
Q Consensus 506 G--EW~~DPdnPtVt 518 (530)
| .|..-++.-...
T Consensus 70 ~~~~WE~g~nr~~~~ 84 (99)
T cd05816 70 GVVSWENGPNRELSA 84 (99)
T ss_pred CcEEEEcCCCeEEEC
Confidence 2 276655544433
No 33
>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. CGTase, also known as cyclodextrin glycosyltransferase and cyclodextrin glucanotransferase, catalyzes the formation of various cyclodextrins (alpha-1,4-glucans) from starch. CGTase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13 and an IPT domain of unknown function. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific
Probab=96.45 E-value=0.027 Score=47.75 Aligned_cols=74 Identities=20% Similarity=0.221 Sum_probs=49.9
Q ss_pred ceEEEEEEec----CCceEEEEeee---CCCCccc--ccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---
Q 009633 438 LEVVEIQYSG----DGEIVEVAGSF---NGWHHRI--KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV--- 504 (530)
Q Consensus 438 LrpVTFrW~g----~AkeVeVTGSF---NNWk~~I--pMeKd~ss~~~a~~g~kksGvWStTL~LPPG-rYEYKFIV--- 504 (530)
.++|+|.... .|+.|+|+|+- .+|+... .|... ........|.+.+.||.| .++|||++
T Consensus 2 ~v~v~f~v~~~~t~~Gq~l~v~Gs~~~LG~W~~~~a~~~~~~--------~~~~~~~~W~~~~~lp~~~~~eyK~~~~~~ 73 (101)
T cd05807 2 QVSVRFVVNNATTQLGENVYLVGNVHELGNWDPSKAIGPFFN--------QVVYQYPNWYYDVSVPAGTTIEFKFIKKNG 73 (101)
T ss_pred cEEEEEEEeccccCCCCEEEEEECHHHHCCCChHHccccccc--------cCCCcCCcEEEEEEcCCCCcEEEEEEEECC
Confidence 4678888752 38999999987 4898542 22110 001245789999999998 79999998
Q ss_pred CCE--eeeCCCCCeecc
Q 009633 505 DGQ--WKVDPQRESVTK 519 (530)
Q Consensus 505 DGE--W~~DPdnPtVtD 519 (530)
||. |...++.-...+
T Consensus 74 ~~~~~WE~g~nr~~~~p 90 (101)
T cd05807 74 DNTVTWESGSNHTYTAP 90 (101)
T ss_pred CCCEEEEeCCCEEEeCC
Confidence 353 766555444333
No 34
>PLN02316 synthase/transferase
Probab=96.00 E-value=0.064 Score=62.77 Aligned_cols=63 Identities=13% Similarity=0.343 Sum_probs=45.7
Q ss_pred CceEEEEEEec------CCceEEEEeeeCCCCcccc--cCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEE-CC
Q 009633 437 GLEVVEIQYSG------DGEIVEVAGSFNGWHHRIK--MDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV-DG 506 (530)
Q Consensus 437 gLrpVTFrW~g------~AkeVeVTGSFNNWk~~Ip--MeKd~ss~~~a~~g~kksGvWStTL~LPPGrYEYKFIV-DG 506 (530)
.-.+|++.|+. +..+|+|.|.||+|.+... +.. .+...+..+.|.+++.+|+.-|-.-|+. ||
T Consensus 327 aG~~v~lyYN~~~~~L~~~~~v~i~gg~N~W~~~~~~~~~~-------~~~~~~~g~ww~a~v~vP~~A~~mDfVFsdg 398 (1036)
T PLN02316 327 AGDTVKLYYNRSSGPLAHSTEIWIHGGYNNWIDGLSIVEKL-------VKSEEKDGDWWYAEVVVPERALVLDWVFADG 398 (1036)
T ss_pred CCCEEEEEECCCCCCCCCCCcEEEEEeEcCCCCCCccccee-------ecccCCCCCEEEEEEecCCCceEEEEEEecC
Confidence 34689999973 3789999999999997532 111 1111234568999999999999999986 55
No 35
>PRK05402 glycogen branching enzyme; Provisional
Probab=95.97 E-value=0.013 Score=65.11 Aligned_cols=63 Identities=21% Similarity=0.054 Sum_probs=47.3
Q ss_pred EEEEEEecC-CceEEEEeeeCCCCcccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEE--CCEe--eeCCCC
Q 009633 440 VVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV--DGQW--KVDPQR 514 (530)
Q Consensus 440 pVTFrW~g~-AkeVeVTGSFNNWk~~IpMeKd~ss~~~a~~g~kksGvWStTL~LPPGrYEYKFIV--DGEW--~~DPdn 514 (530)
-|+|+..++ |++|.|.|+||+ ....+|.+. ...|+|++.+.+..|.. |||.| ||+| +.||-.
T Consensus 29 g~~f~vwaP~A~~V~vvgdfn~-~~~~~m~~~-----------~~~G~w~~~ip~~~g~~-YKy~i~~~g~~~~k~DPya 95 (726)
T PRK05402 29 GLVVRALLPGAEEVWVILPGGG-RKLAELERL-----------HPRGLFAGVLPRKGPFD-YRLRVTWGGGEQLIDDPYR 95 (726)
T ss_pred cEEEEEECCCCeEEEEEeecCC-CccccceEc-----------CCCceEEEEecCCCCCC-eEEEEEeCCceeEeccccc
Confidence 578888887 999999999996 344678864 36799999999778833 55555 8864 567766
Q ss_pred C
Q 009633 515 E 515 (530)
Q Consensus 515 P 515 (530)
-
T Consensus 96 f 96 (726)
T PRK05402 96 F 96 (726)
T ss_pred c
Confidence 3
No 36
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=95.62 E-value=0.087 Score=45.00 Aligned_cols=67 Identities=27% Similarity=0.450 Sum_probs=46.9
Q ss_pred EEEEEEe-c---CCceEEEEeeeC---CCCcc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEEC---C
Q 009633 440 VVEIQYS-G---DGEIVEVAGSFN---GWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIVD---G 506 (530)
Q Consensus 440 pVTFrW~-g---~AkeVeVTGSFN---NWk~~--IpMeKd~ss~~~a~~g~kksGvWStTL~LPPG-rYEYKFIVD---G 506 (530)
.|+|... + .++.|+|+|+.. +|+.. ++|.. .....|.+.+.||.| ..+|||++- |
T Consensus 2 ~v~f~~~~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~l~~------------~~~~~W~~~v~lp~~~~veyKyv~~~~~~ 69 (97)
T cd05810 2 SVTFSCNNGTTQLGQSVYVVGNVPQLGNWSPADAVKLDP------------TAYPTWSGSISLPASTNVEWKCLKRNETN 69 (97)
T ss_pred eEEEEEeecccCCCCeEEEEEChHHhCCCChhhcccccC------------CCCCeEEEEEEcCCCCeEEEEEEEEcCCC
Confidence 5666633 2 389999999874 99854 45643 245789999999998 799999982 2
Q ss_pred -----EeeeCCCCCeec
Q 009633 507 -----QWKVDPQRESVT 518 (530)
Q Consensus 507 -----EW~~DPdnPtVt 518 (530)
.|...++.-...
T Consensus 70 ~~~~v~WE~g~Nr~~~~ 86 (97)
T cd05810 70 PTAGVQWQGGGNNQLTT 86 (97)
T ss_pred CcceEEEeeCCCEEEeC
Confidence 476665554433
No 37
>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol
Probab=94.93 E-value=0.1 Score=44.10 Aligned_cols=55 Identities=20% Similarity=0.439 Sum_probs=39.7
Q ss_pred EEEEEec---CCceEEEEeee---CCCCcc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE
Q 009633 441 VEIQYSG---DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV 504 (530)
Q Consensus 441 VTFrW~g---~AkeVeVTGSF---NNWk~~--IpMeKd~ss~~~a~~g~kksGvWStTL~LPPG-rYEYKFIV 504 (530)
|+|...+ .|+.|+|+|+- .+|+.. ++|... .......|.+++.+|++ ..+|||+|
T Consensus 2 l~f~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~---------~~~~~~~W~~~v~~~~~~~veYky~v 65 (101)
T cd05815 2 LSFKLPYYTQWGQSLLICGSDPLLGSWNVKKGLLLKPS---------HQGDVLVWSGSISVPPGFSSEYNYYV 65 (101)
T ss_pred EEEEEEEEccCCCEEEEEcChHHcCCcChHhcEeeeec---------CCCCCCEEEEEEEeCCCCcEEEEEEE
Confidence 5666654 38999999987 589754 557431 01234589999999987 69999999
No 38
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=94.25 E-value=0.13 Score=56.25 Aligned_cols=66 Identities=24% Similarity=0.318 Sum_probs=47.8
Q ss_pred EEEEEEecC-CceEEEEeeeCCCCc-----ccccCCCCCCCccccccccCCCcEEEEEE-eCCe-eEEEEEEECCE--ee
Q 009633 440 VVEIQYSGD-GEIVEVAGSFNGWHH-----RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-TYEIKFIVDGQ--WK 509 (530)
Q Consensus 440 pVTFrW~g~-AkeVeVTGSFNNWk~-----~IpMeKd~ss~~~a~~g~kksGvWStTL~-LPPG-rYEYKFIVDGE--W~ 509 (530)
.|+|+..++ |++|.|.+ |++|.. .++|.+. ..|+|++.+. +.+| .|.|++..+|. ++
T Consensus 20 ~~~F~vwaP~a~~V~l~~-~~~~~~~~~~~~~~m~~~------------~~gvw~~~i~~~~~g~~Y~y~v~~~~~~~~~ 86 (605)
T TIGR02104 20 KTVFRVWAPTATEVELLL-YKSGEDGEPYKVVKMKRG------------ENGVWSAVLEGDLHGYFYTYQVCINGKWRET 86 (605)
T ss_pred eeEEEEECCCCCEEEEEE-EcCCCCCccceEEecccC------------CCCEEEEEECCCCCCCEEEEEEEcCCCeEEE
Confidence 489999887 99999997 888853 3577753 5799999996 5666 44444444565 47
Q ss_pred eCCCCCeec
Q 009633 510 VDPQRESVT 518 (530)
Q Consensus 510 ~DPdnPtVt 518 (530)
.||-.....
T Consensus 87 ~DPya~~~~ 95 (605)
T TIGR02104 87 VDPYAKAVT 95 (605)
T ss_pred cCCCcceec
Confidence 898776544
No 39
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=93.78 E-value=0.093 Score=44.38 Aligned_cols=62 Identities=24% Similarity=0.598 Sum_probs=38.3
Q ss_pred EEEEEEec------CCceEEEEeeeCCCCcc--cccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEE-CC--Ee
Q 009633 440 VVEIQYSG------DGEIVEVAGSFNGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV-DG--QW 508 (530)
Q Consensus 440 pVTFrW~g------~AkeVeVTGSFNNWk~~--IpMeKd~ss~~~a~~g~kksGvWStTL~LPPGrYEYKFIV-DG--EW 508 (530)
+|+|.|.. ++.+|.+.+.|++|... +.|.+.. . ....+.|++++.+|...|+..|+. || .|
T Consensus 3 ~vtVyYn~~~~~l~g~~~v~~~~G~n~W~~~~~~~m~~~~-------~-~~~~~~~~~tv~vP~~a~~~dfvF~dg~~~w 74 (87)
T PF03423_consen 3 TVTVYYNPSLTALSGAPNVHLHGGFNRWTHVPGFGMTKMC-------V-PDEGGWWKATVDVPEDAYVMDFVFNDGAGNW 74 (87)
T ss_dssp EEEEEE---E-SSS-S-EEEEEETTS-B-SSS-EE-EEES-------S----TTEEEEEEE--TTTSEEEEEEE-SSS-E
T ss_pred EEEEEEEeCCCCCCCCCcEEEEecCCCCCcCCCCCcceee-------e-eecCCEEEEEEEEcCCceEEEEEEcCCCCcE
Confidence 67888843 37899999999999866 3465421 0 013799999999999999999998 65 56
Q ss_pred e
Q 009633 509 K 509 (530)
Q Consensus 509 ~ 509 (530)
-
T Consensus 75 D 75 (87)
T PF03423_consen 75 D 75 (87)
T ss_dssp E
T ss_pred e
Confidence 3
No 40
>PLN02316 synthase/transferase
Probab=92.79 E-value=0.71 Score=54.49 Aligned_cols=56 Identities=27% Similarity=0.430 Sum_probs=43.7
Q ss_pred ceEEEEEEec------CCceEEEEeeeCCCCccc------ccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEE
Q 009633 438 LEVVEIQYSG------DGEIVEVAGSFNGWHHRI------KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV 504 (530)
Q Consensus 438 LrpVTFrW~g------~AkeVeVTGSFNNWk~~I------pMeKd~ss~~~a~~g~kksGvWStTL~LPPGrYEYKFIV 504 (530)
-.+|++.|+. +..+|++.|+||.|.+.. +|.+. ...+.|.+++.+|...|-..|+.
T Consensus 490 G~~v~v~Yn~~~t~l~~~~ev~~~g~~NrWth~~~~~~~~~m~~~-----------~~g~~~~a~v~vP~da~~mdfvF 557 (1036)
T PLN02316 490 GTTVTVLYNPANTVLNGKPEVWFRGSFNRWTHRLGPLPPQKMVPA-----------DNGSHLKATVKVPLDAYMMDFVF 557 (1036)
T ss_pred CCEEEEEECCCCCcCCCCceEEEEccccCcCCCCCCCCceeeeec-----------CCCceEEEEEEccccceEEEEEE
Confidence 3689999965 268999999999999763 24432 23356699999999999999987
No 41
>PF11806 DUF3327: Domain of unknown function (DUF3327); InterPro: IPR021764 This entry represents the N-terminal domain of enterochelin esterase. The activity of the enzyme has been characterised [, ]. Fes catalyses the hydrolysis of the 2,3-dihydroxy-N-benzoyl-L-serine trimer, enterochelin, forming 2,3-dihydroxybenzoylserine. It also catalyses hydrolysis of free enterobactin and ferric enterobactin. Upon hydrolysis of ferric enterobactin by Fes, released iron is probably reduced by a second enzyme. Enterochelin esterase represents a family of non-peptidase homologues belonging to the MEROPS peptidase family S9, clan SC. ; GO: 0005506 iron ion binding, 0008849 enterochelin esterase activity, 0006826 iron ion transport, 0005737 cytoplasm; PDB: 3MGA_B 3C87_B 3C8H_B 3C8D_A 2B20_A.
Probab=92.70 E-value=0.67 Score=41.64 Aligned_cols=79 Identities=22% Similarity=0.275 Sum_probs=53.2
Q ss_pred eEEEEEEe----cCCceEEEEeeeCCCCccc-----ccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEECCE-
Q 009633 439 EVVEIQYS----GDGEIVEVAGSFNGWHHRI-----KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIVDGQ- 507 (530)
Q Consensus 439 rpVTFrW~----g~AkeVeVTGSFNNWk~~I-----pMeKd~ss~~~a~~g~kksGvWStTL~LPPG-rYEYKFIVDGE- 507 (530)
..|||-|. +....|.|-|..+++..+. .|.+. .+..+|..++.||.+ +=.|.|+.+-.
T Consensus 2 ~~VTFlWRdp~~~~~~~~~V~~~~ngvtD~~~~~~~~l~Rl-----------~gTDVW~~t~~lp~d~rgSY~~~p~~~~ 70 (122)
T PF11806_consen 2 CLVTFLWRDPDEGASANVRVYGDINGVTDHHDPDPQSLQRL-----------PGTDVWYWTYRLPADWRGSYSFIPDVPD 70 (122)
T ss_dssp -EEEEEEE-TSTTT----EEEEEETTTTCGGGT---BEEE------------TTSSEEEEEEEEETT-EEEEEEEEES-T
T ss_pred cEEEEEEeCCCCCCCceeEEEEECCcccccccCChhhheeC-----------CCCceEEEEEEECcccEEEEEEEecCcc
Confidence 47999999 4478899999999996543 45554 367899999999988 88999997533
Q ss_pred ---------------eeeCCCCCeecc-----CCccceEEE
Q 009633 508 ---------------WKVDPQRESVTK-----GGICNNILR 528 (530)
Q Consensus 508 ---------------W~~DPdnPtVtD-----gGnvNNVLe 528 (530)
-..||-||.... .|..-++++
T Consensus 71 ~~~~~r~~~r~~l~~~~~DPlNp~~~~~~~~~~g~~~S~l~ 111 (122)
T PF11806_consen 71 ARGAQREWWRAILAQAQADPLNPRPWPNGAQDRGNAASVLE 111 (122)
T ss_dssp -HHHHHHHHHHHGGG-B--TTSSSEEE-TT---SSEEEEEE
T ss_pred cchhHHHHHHHHHhccCCCCCCCCCCCCCccccccccCcee
Confidence 356999997642 256666665
No 42
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=92.68 E-value=0.46 Score=49.98 Aligned_cols=82 Identities=20% Similarity=0.228 Sum_probs=56.3
Q ss_pred CCCceEEEEEEecC-C-------ceEEEEeeeCCCC------cccccCCCCCCCccccccccCCCcEEEEEEeCCe-eEE
Q 009633 435 LSGLEVVEIQYSGD-G-------EIVEVAGSFNGWH------HRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYE 499 (530)
Q Consensus 435 LsgLrpVTFrW~g~-A-------keVeVTGSFNNWk------~~IpMeKd~ss~~~a~~g~kksGvWStTL~LPPG-rYE 499 (530)
..+.+.|||-|+++ + +.|+|. .|+.. .+..|.+. ....+|..++.||.. +-.
T Consensus 35 ~~~~~~vTFlwr~~~~~~~~~~~~~v~~~--~n~~tdh~~~~~~~~l~rl-----------~~tDvW~~~~~~p~~~r~s 101 (411)
T PRK10439 35 DDGMVRVTFWWRDPQGDEEHSTIRRVWIY--INGVTDHHQNSQPQSLQRI-----------AGTDVWQWSTELSANWRGS 101 (411)
T ss_pred CCCcEEEEEEeeCCCCCcccccceeEEEe--CCCCCCcCccCCcchhhcc-----------CCCceEEEEEEECcccEEE
Confidence 34668999999974 3 258874 23443 22357765 367899999999998 899
Q ss_pred EEEEEC---C-------------------------EeeeCCCCCeeccC--CccceEEEe
Q 009633 500 IKFIVD---G-------------------------QWKVDPQRESVTKG--GICNNILRV 529 (530)
Q Consensus 500 YKFIVD---G-------------------------EW~~DPdnPtVtDg--GnvNNVLeV 529 (530)
|+|+++ . .-+.||.+|....+ |...++|.+
T Consensus 102 Y~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~l~~~~~~DP~N~~~~~~~~~~~~S~l~l 161 (411)
T PRK10439 102 YCFIPTERDDIFSAFAPAPSPDRLELREGWRKLLPQAIADPLNPQSWRGGRGHAVSALEM 161 (411)
T ss_pred EEEEeccccccccccccccchhHHHHHHHHHHhhccccCCCCCCCCCCCCCccccccccC
Confidence 999993 1 11479999986542 443467654
No 43
>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Laforin, encoded by the EPM2A gene, is a dual-specificity phosphatase that dephosphorylates complex carbohydrates. Mutations in the gene encoding laforin result in Lafora disease, a fatal autosomal recessive neurodegenerative disorder characterized by the presence of intracellular deposits of insoluble, abnormally branched, glycogen-like polymers, known as Lafora bodies, in neurons, muscle, liver, and other tissues. The molecular basis for the formation of these Lafora bodies is unknown. Laforin is one of the only phosphatases that contains a carbohydrate-binding module. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen
Probab=91.92 E-value=0.72 Score=41.38 Aligned_cols=54 Identities=22% Similarity=0.399 Sum_probs=36.8
Q ss_pred ecCCceEEEEeee---CCCCcc--cccCCCCCCCccccccccCCCcEEEEEEeCCe----eEEEEEEE
Q 009633 446 SGDGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG----TYEIKFIV 504 (530)
Q Consensus 446 ~g~AkeVeVTGSF---NNWk~~--IpMeKd~ss~~~a~~g~kksGvWStTL~LPPG----rYEYKFIV 504 (530)
-.++++|+|+|+- .+|+.. ++|...... ........|.+.+.||+| ..+|||+.
T Consensus 12 ~~~gq~v~IvGsipeLG~Wd~~~Av~Ls~~~yt-----~~~~~~~~W~~~v~lp~~~~~~~~eYKfv~ 74 (112)
T cd05806 12 ADRDTELLVLGSRPELGSWDPQRAVPMRPARKA-----LSPQEPSLWLGEVELSEPGSEDTFWYKFLK 74 (112)
T ss_pred cCCCCEEEEEECchhcCCCCccccccccccccc-----ccCCCCCEEEEEEEcCCCCcCceEEEEEEE
Confidence 3468999999986 589854 456532000 000134579999999986 69999998
No 44
>PLN02950 4-alpha-glucanotransferase
Probab=91.41 E-value=1.3 Score=51.60 Aligned_cols=71 Identities=20% Similarity=0.373 Sum_probs=52.4
Q ss_pred CceEEEEEEec----CCceEEEEeee---CCCCcc--cccCCCCCCCccccccccCCCcEEEEEEeCCe--eEEEEEEE-
Q 009633 437 GLEVVEIQYSG----DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG--TYEIKFIV- 504 (530)
Q Consensus 437 gLrpVTFrW~g----~AkeVeVTGSF---NNWk~~--IpMeKd~ss~~~a~~g~kksGvWStTL~LPPG--rYEYKFIV- 504 (530)
..+.|+|+... .|+.|+|+|+- .+|+.. ++|.. .....|++++.+|++ ..+|||++
T Consensus 151 ~~v~V~F~v~~~~~~~Gq~v~VvGs~~eLGnW~~~~a~~Ls~------------~~~p~W~~~v~lp~~~~~~EYKyv~~ 218 (909)
T PLN02950 151 DEIVVRFKIACPRLEEGTSVYVTGSIAQLGNWQVDDGLKLNY------------TGDSIWEADCLVPKSDFPIKYKYALQ 218 (909)
T ss_pred CceeEEEEEecCccCCCCeEEEEechhhcCCCCccccccccc------------CCCCcEEEEEEecCCCceEEEEEEEE
Confidence 34788888754 38999999987 489854 34543 246789999999988 58999998
Q ss_pred --CCE--eeeCCCCCeecc
Q 009633 505 --DGQ--WKVDPQRESVTK 519 (530)
Q Consensus 505 --DGE--W~~DPdnPtVtD 519 (530)
+|. |-..++.-...+
T Consensus 219 ~~~g~v~WE~g~NR~~~~p 237 (909)
T PLN02950 219 TAEGLVSLELGVNRELSLD 237 (909)
T ss_pred cCCCceEEeeCCCceeecC
Confidence 443 877666655544
No 45
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=90.98 E-value=0.52 Score=52.96 Aligned_cols=55 Identities=24% Similarity=0.413 Sum_probs=42.4
Q ss_pred EEEEEEecC-CceEEEEeeeCCCCc----ccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEECCEe
Q 009633 440 VVEIQYSGD-GEIVEVAGSFNGWHH----RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQW 508 (530)
Q Consensus 440 pVTFrW~g~-AkeVeVTGSFNNWk~----~IpMeKd~ss~~~a~~g~kksGvWStTL~-LPPGrYEYKFIVDGEW 508 (530)
.|+|+..++ |+.|.|. -|++|.. .++|.+ ...|+|.+++. +.+|.| |+|.|+|.|
T Consensus 15 g~~F~vwap~A~~V~L~-l~~~~~~~~~~~~~m~~------------~~~gvW~~~v~~~~~g~~-Y~yrv~g~~ 75 (688)
T TIGR02100 15 GVNFALFSANAEKVELC-LFDAQGEKEEARLPLPE------------RTDDIWHGYLPGAQPGQL-YGYRVHGPY 75 (688)
T ss_pred cEEEEEECCCCCEEEEE-EEcCCCCceeeEEeccc------------CCCCEEEEEECCCCCCCE-EEEEEeeee
Confidence 589999887 9999996 6766642 356765 35799999995 778875 999999854
No 46
>PRK03705 glycogen debranching enzyme; Provisional
Probab=90.90 E-value=0.51 Score=52.86 Aligned_cols=55 Identities=25% Similarity=0.441 Sum_probs=42.0
Q ss_pred EEEEEEecC-CceEEEEeeeCCCC--cccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEECCEe
Q 009633 440 VVEIQYSGD-GEIVEVAGSFNGWH--HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQW 508 (530)
Q Consensus 440 pVTFrW~g~-AkeVeVTGSFNNWk--~~IpMeKd~ss~~~a~~g~kksGvWStTL~-LPPGrYEYKFIVDGEW 508 (530)
.|+|+..++ |+.|.|.. |++|. ..++|.+ ...|+|.+.+. +.+|. .|+|.|+|.|
T Consensus 20 g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~------------~~~gvW~~~v~~~~~G~-~Y~yrv~g~~ 78 (658)
T PRK03705 20 GVNFTLFSAHAERVELCV-FDENGQEQRYDLPA------------RSGDIWHGYLPGARPGL-RYGYRVHGPW 78 (658)
T ss_pred CEEEEEECCCCCEEEEEE-EcCCCCeeeEeeee------------ccCCEEEEEECCCCCCC-EEEEEEcccc
Confidence 589998887 99999997 77653 2456764 35799999985 77775 4999999853
No 47
>PLN02960 alpha-amylase
Probab=89.13 E-value=0.96 Score=52.76 Aligned_cols=59 Identities=19% Similarity=0.321 Sum_probs=43.0
Q ss_pred EEEEEEec-CCceEEEEeeeCCCCccc-ccCCCCCCCccccccccCCCcEEEEEE--eCCee-------EEEEEEEC
Q 009633 440 VVEIQYSG-DGEIVEVAGSFNGWHHRI-KMDPLPSSSIIEPIRSRKSRLWSTVLW--LYPGT-------YEIKFIVD 505 (530)
Q Consensus 440 pVTFrW~g-~AkeVeVTGSFNNWk~~I-pMeKd~ss~~~a~~g~kksGvWStTL~--LPPGr-------YEYKFIVD 505 (530)
.|.|.-.+ +|..+.|+|+||||.+.. .|.+ .-.+..+-|.|.+++. |.+|. -||.|..|
T Consensus 129 ~~~~~~wap~a~~~~~~gdfn~w~~~~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (897)
T PLN02960 129 RVDFMEWAPGARYCSLVGDFNNWSPTENRARE-------GYFGHDDFGYWFIILEDKLREGEEPDELYFQEYNYVDD 198 (897)
T ss_pred CeEEEEEcCCceeEEEeecccCCCcccchhhc-------ccccccccceEEEEechhhhcCCCcchhhhhhhccccc
Confidence 56666555 499999999999999774 3431 1234567899999994 88873 46888776
No 48
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=88.68 E-value=1.1 Score=53.41 Aligned_cols=66 Identities=15% Similarity=0.243 Sum_probs=48.3
Q ss_pred EEEEEEecC-CceEEEEe-eeCCCCc---ccccCCCCCCCccccccccCCCcEEEEEE-eCCe-----eEEEEEEECC--
Q 009633 440 VVEIQYSGD-GEIVEVAG-SFNGWHH---RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-----TYEIKFIVDG-- 506 (530)
Q Consensus 440 pVTFrW~g~-AkeVeVTG-SFNNWk~---~IpMeKd~ss~~~a~~g~kksGvWStTL~-LPPG-----rYEYKFIVDG-- 506 (530)
.|+|+..++ |++|.|.+ .+++|.. .++|.+. ..|+|++.+. +.+| -|.|+|.|+|
T Consensus 328 ~v~F~vWAP~A~~V~L~lyd~~~~~~~~~~~~m~~~------------~~GvW~v~v~~~~~G~~d~~G~~Y~Y~V~~~~ 395 (1111)
T TIGR02102 328 TVTLKLWSPSADHVSVVLYDKDDQDKVVGTVELKKG------------DRGVWEVQLTKENTGIDSLTGYYYHYEITRGG 395 (1111)
T ss_pred CEEEEEECCCCCEEEEEEEeCCCCCCceeeEecccC------------CCCEEEEEECCcccCcccCCCceEEEEEECCC
Confidence 378998887 99999998 4456654 4678763 6899999986 5543 3688888876
Q ss_pred --EeeeCCCCCee
Q 009633 507 --QWKVDPQRESV 517 (530)
Q Consensus 507 --EW~~DPdnPtV 517 (530)
..+.||-...+
T Consensus 396 ~~~~~~DPYA~al 408 (1111)
T TIGR02102 396 DKVLALDPYAKSL 408 (1111)
T ss_pred ceEEEeChhheEE
Confidence 35678866543
No 49
>PLN02950 4-alpha-glucanotransferase
Probab=88.54 E-value=2.6 Score=49.27 Aligned_cols=67 Identities=19% Similarity=0.452 Sum_probs=47.1
Q ss_pred eEEEEEEec---CCceEEEEeee---CCCCcc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE-C--C
Q 009633 439 EVVEIQYSG---DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV-D--G 506 (530)
Q Consensus 439 rpVTFrW~g---~AkeVeVTGSF---NNWk~~--IpMeKd~ss~~~a~~g~kksGvWStTL~LPPG-rYEYKFIV-D--G 506 (530)
+.|+|..+. -|++|+|+|+- .+|+.. ++|... .......|++++.||+| ..+|||+| | |
T Consensus 9 V~V~F~i~y~T~~GQ~l~VvGs~~~LG~Wd~~kA~~Ls~~---------~~~d~~~W~~~v~lp~~~~ieYKYv~v~~~g 79 (909)
T PLN02950 9 VTLSFRIPYYTQWGQSLLVCGSEPLLGSWNVKKGLLLSPV---------HQGDELVWEGSVSVPEGFSCEYSYYVVDDNK 79 (909)
T ss_pred EEEEEEeEEecCCCCeEEEEecchhcCCCCcccceecccc---------cCCCCCeEEEEEEecCCCeEEEEEEEEeCCC
Confidence 567777765 38999999988 479754 567432 11234589999999987 69999994 3 4
Q ss_pred E---eeeCCCC
Q 009633 507 Q---WKVDPQR 514 (530)
Q Consensus 507 E---W~~DPdn 514 (530)
. |-..++.
T Consensus 80 ~vi~WE~g~NR 90 (909)
T PLN02950 80 NVLRWEAGKKR 90 (909)
T ss_pred ceeeeecCCCe
Confidence 3 7666543
No 50
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=85.86 E-value=2 Score=50.25 Aligned_cols=68 Identities=19% Similarity=0.236 Sum_probs=48.4
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCC--cccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEC------CE-
Q 009633 439 EVVEIQYSGD-GEIVEVAGSFNGWH--HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD------GQ- 507 (530)
Q Consensus 439 rpVTFrW~g~-AkeVeVTGSFNNWk--~~IpMeKd~ss~~~a~~g~kksGvWStTL~-LPPGrYEYKFIVD------GE- 507 (530)
..|+|+..++ |+.|.|.+-+++|. ..++|.+. ...|+|++++. ...|.| |+|.|+ |.
T Consensus 135 ~gv~FrVWAPtA~~V~L~Ly~~~~~~~~~~~M~~~-----------~~~GVWsv~v~g~~~G~~-Y~Y~V~v~~p~~G~v 202 (898)
T TIGR02103 135 SGVTFRLWAPTAQQVKLHIYSASKKVETTLPMTRD-----------STSGVWSAEGGSSWKGAY-YRYEVTVYHPSTGKV 202 (898)
T ss_pred CcEEEEEECCCCCEEEEEEEcCCCCccceEeCccC-----------CCCCEEEEEECcCCCCCE-eEEEEEEecCCCCeE
Confidence 4789999887 99999997766664 23578753 25799999985 556653 677775 54
Q ss_pred ---eeeCCCCCeec
Q 009633 508 ---WKVDPQRESVT 518 (530)
Q Consensus 508 ---W~~DPdnPtVt 518 (530)
.+.||-.-...
T Consensus 203 ~~~~v~DPYA~als 216 (898)
T TIGR02103 203 ETYLVTDPYSVSLS 216 (898)
T ss_pred CCeEEeCcCcceEc
Confidence 36788776554
No 51
>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain. Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of
Probab=83.83 E-value=5.6 Score=33.24 Aligned_cols=58 Identities=16% Similarity=0.068 Sum_probs=37.6
Q ss_pred eEEEEEEec---CCceEEEEeeeCC--CC-cccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEE
Q 009633 439 EVVEIQYSG---DGEIVEVAGSFNG--WH-HRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV 504 (530)
Q Consensus 439 rpVTFrW~g---~AkeVeVTGSFNN--Wk-~~IpMeKd~ss~~~a~~g~kksGvWStTL~LPPGrYEYKFIV 504 (530)
.+|+|+.+- +...|.|.---+. |. ..++|.+..+ ......|.+++.++.|++.|.|+|
T Consensus 16 ~~v~irlr~~~~~v~~v~l~~~~~~~~~~~~~~~M~~~~~--------~~~~~~~~~~i~~~~~~~~Y~F~l 79 (116)
T cd02857 16 DTLHIRLRTKKGDVAKVYLRYGDPYDKGEEEEVPMRKDGS--------DELFDYWEATLPPPTGRLRYYFEL 79 (116)
T ss_pred CEEEEEEEecCCCccEEEEEEECCCCCCCceEEEEEEeee--------CCceeEEEEEEecCCcEEEEEEEE
Confidence 456666543 3678888655443 22 2467876521 112246999999888999999999
No 52
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=73.92 E-value=11 Score=45.55 Aligned_cols=56 Identities=25% Similarity=0.388 Sum_probs=43.5
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCCcc----cccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEECCEe
Q 009633 439 EVVEIQYSGD-GEIVEVAGSFNGWHHR----IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQW 508 (530)
Q Consensus 439 rpVTFrW~g~-AkeVeVTGSFNNWk~~----IpMeKd~ss~~~a~~g~kksGvWStTL~-LPPGrYEYKFIVDGEW 508 (530)
..|+|+...+ |+.|.|. -|+.|... ++|.. +..|+|.+.+. +.+|. .|+|.|+|.|
T Consensus 23 ~gv~F~v~ap~A~~V~L~-lf~~~~~~~~~~~~l~~------------~~g~vW~~~i~~~~~g~-~Ygyrv~g~~ 84 (1221)
T PRK14510 23 GGVNLALFSGAAERVEFC-LFDLWGVREEARIKLPG------------RTGDVWHGFIVGVGPGA-RYGNRQEGPG 84 (1221)
T ss_pred CeEEEEEECCCCCEEEEE-EEECCCCCeeEEEECCC------------CcCCEEEEEEccCCCCc-EEEEEeccCC
Confidence 3689998876 9999997 89988643 45542 35789999885 88897 6999999855
No 53
>PLN02877 alpha-amylase/limit dextrinase
Probab=58.39 E-value=27 Score=41.70 Aligned_cols=65 Identities=14% Similarity=0.269 Sum_probs=43.3
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCCcc-----cccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEC------
Q 009633 439 EVVEIQYSGD-GEIVEVAGSFNGWHHR-----IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD------ 505 (530)
Q Consensus 439 rpVTFrW~g~-AkeVeVTGSFNNWk~~-----IpMeKd~ss~~~a~~g~kksGvWStTL~-LPPGrYEYKFIVD------ 505 (530)
..|+|+..++ |+.|.|.- |++|... ++|. ...|+|++.+. ...|. .|+|.|+
T Consensus 222 ~g~~F~VWAPtA~~V~L~l-yd~~~~~~~~~~~~m~-------------~~~GVWsv~v~~~~~G~-~Y~Y~V~v~~p~~ 286 (970)
T PLN02877 222 DAVSLYLWAPTAQAVSLCL-YDDPRGKEPLEIVQLK-------------ESNGVWSVEGPKSWEGC-YYVYEVSVYHPST 286 (970)
T ss_pred CCEEEEEECCCCCEEEEEE-ecCCCCccceEEeccc-------------CCCCEEEEEeccCCCCC-eeEEEEeecccCC
Confidence 3789999887 99999984 6665321 3454 25899999986 45663 4777776
Q ss_pred CEe----eeCCCCCeec
Q 009633 506 GQW----KVDPQRESVT 518 (530)
Q Consensus 506 GEW----~~DPdnPtVt 518 (530)
|.+ +.||-.-...
T Consensus 287 g~~~~~~v~DPYA~als 303 (970)
T PLN02877 287 GKVETCYANDPYARGLS 303 (970)
T ss_pred CcccccccCCccceEEe
Confidence 322 4677665543
No 54
>PLN03244 alpha-amylase; Provisional
Probab=54.52 E-value=10 Score=44.49 Aligned_cols=59 Identities=19% Similarity=0.407 Sum_probs=40.8
Q ss_pred EEE-EEecCCceEEEEeeeCCCCcccccCCCCCCCccccccccCCCcEEEEEE--eCCee-------EEEEEEEC
Q 009633 441 VEI-QYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLW--LYPGT-------YEIKFIVD 505 (530)
Q Consensus 441 VTF-rW~g~AkeVeVTGSFNNWk~~IpMeKd~ss~~~a~~g~kksGvWStTL~--LPPGr-------YEYKFIVD 505 (530)
++| .|--+|.--.|.|+||||.+.....+. .-.+..+-|.|.+.+. |..|. -||.|.-|
T Consensus 133 ~~~~ewapga~~~~~~gdfn~w~~~~~~~r~------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (872)
T PLN03244 133 VDFMDWAPGARYCAIIGDFNGWSPTENAARE------GHFGHDDYGYWFIILEDKLREGEEPDELYFQQYNYVDD 201 (872)
T ss_pred ceeEeecCCcceeeeeccccCCCcccccccc------ccccccccceEEEEechhhhcCCCchhhhHhhhccccc
Confidence 444 565568999999999999976444332 1134457899999984 88773 36777655
No 55
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=54.41 E-value=26 Score=29.49 Aligned_cols=58 Identities=26% Similarity=0.267 Sum_probs=39.1
Q ss_pred eEEEEEEecC---CceEEEEeee-CCCCcccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEE-C-CEeeeC
Q 009633 439 EVVEIQYSGD---GEIVEVAGSF-NGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV-D-GQWKVD 511 (530)
Q Consensus 439 rpVTFrW~g~---AkeVeVTGSF-NNWk~~IpMeKd~ss~~~a~~g~kksGvWStTL~LPPGrYEYKFIV-D-GEW~~D 511 (530)
-.|.+.+.++ =..|+|.+.- ..| ++|.+. -...|.+.-.++.|-+.+|+.. | |+|...
T Consensus 14 l~v~v~n~gG~gdi~~Vevk~~~s~~W---~~m~r~------------wGa~W~~~~~~~~~pls~Rvts~~~G~~vv~ 77 (82)
T PF01357_consen 14 LAVLVKNVGGDGDIKAVEVKQSGSGNW---IPMKRS------------WGAVWQIDSNPPGGPLSFRVTSGDSGQTVVA 77 (82)
T ss_dssp EEEEEEECCTTS-EEEEEEEETTSSS----EE-EEE------------CTTEEEEE-SS--SSEEEEEEETTTSEEEEE
T ss_pred EEEEEEEcCCCccEEEEEEEeCCCCCc---eEeecC------------cCceEEECCCCcCCCEEEEEEEcCCCeEEEE
Confidence 5677888765 2679999544 457 478763 3569999877888899999998 7 888753
No 56
>PF03370 CBM_21: Putative phosphatase regulatory subunit; InterPro: IPR005036 This family consists of several eukaryotic proteins that are thought to be involved in the regulation of glycogen metabolism. For instance, the mouse PTG protein O08541 from SWISSPROT has been shown to interact with glycogen synthase, phosphorylase kinase, phosphorylase a: these three enzymes have key roles in the regulation of glycogen metabolism. PTG also binds the catalytic subunit of protein phosphatase 1 (PP1C) and localizes it to glycogen. Subsets of similar interactions have been observed with several other members of this family, such as the yeast PIG1, PIG2, GAC1 and GIP2 proteins. While the precise function of these proteins is not known, they may serve a scaffold function, bringing together the key enzymes in glycogen metabolism. This entry is a carbohydrate binding domain.; GO: 0005515 protein binding; PDB: 2V8M_D 2V8L_A 2VQ4_A 2EEF_A 2DJM_A.
Probab=51.64 E-value=44 Score=29.41 Aligned_cols=66 Identities=18% Similarity=0.188 Sum_probs=39.9
Q ss_pred eEEEEEEecC--CceEEEEeeeCCCCcccccCCCCCCCccc---cccccCCCcEEEEEEeCCe--------eEEEEEEEC
Q 009633 439 EVVEIQYSGD--GEIVEVAGSFNGWHHRIKMDPLPSSSIIE---PIRSRKSRLWSTVLWLYPG--------TYEIKFIVD 505 (530)
Q Consensus 439 rpVTFrW~g~--AkeVeVTGSFNNWk~~IpMeKd~ss~~~a---~~g~kksGvWStTL~LPPG--------rYEYKFIVD 505 (530)
...++...+- .+.|.|.=+|++|.....+.-. +.-. ......-..|..++.|++. .+-.+|.|+
T Consensus 21 L~G~V~V~NlayeK~V~VryT~D~W~t~~d~~a~---y~~~~~~~~~~~~~d~F~F~i~l~~~~~~~~~~lef~I~Y~~~ 97 (113)
T PF03370_consen 21 LSGTVRVRNLAYEKEVTVRYTFDNWRTFSDVPAS---YVSSCPGPSPSGNYDRFSFSIPLPDLLPPEGGRLEFCIRYEVN 97 (113)
T ss_dssp EEEEEEEE-SSSSEEEEEEEETSCTSSCCEEEEE---EEE---EESTTSSEEEEEEEEE-SSE--T-TS-SEEEEEEEET
T ss_pred EEEEEEEEcCCCCeEEEEEEeeCCCCceeEEeeE---EeccccCCCCCCcccEEEEEEECCcccccCCceEEEEEEEEeC
Confidence 4556666654 6899999999999866443211 0000 0111233488888888754 577899999
Q ss_pred CE
Q 009633 506 GQ 507 (530)
Q Consensus 506 GE 507 (530)
|.
T Consensus 98 g~ 99 (113)
T PF03370_consen 98 GQ 99 (113)
T ss_dssp TE
T ss_pred CC
Confidence 96
No 57
>PF02903 Alpha-amylase_N: Alpha amylase, N-terminal ig-like domain; InterPro: IPR004185 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1J0J_A 1J0H_A 1J0I_A 1J0K_A 1EA9_C 1SMA_A 1GVI_B 1WZK_B 1VFM_B 3A6O_A ....
Probab=51.42 E-value=31 Score=30.12 Aligned_cols=67 Identities=13% Similarity=0.182 Sum_probs=40.1
Q ss_pred EEEEEEe-cCCceEEEE-eeeCCC----C-cccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEC--CE-ee
Q 009633 440 VVEIQYS-GDGEIVEVA-GSFNGW----H-HRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVD--GQ-WK 509 (530)
Q Consensus 440 pVTFrW~-g~AkeVeVT-GSFNNW----k-~~IpMeKd~ss~~~a~~g~kksGvWStTL~LPPGrYEYKFIVD--GE-W~ 509 (530)
.|.|+-. ++.++|.|. |+-..| . ..++|.+.. .+..-..|++++.++..+..|.|.|- |+ |-
T Consensus 24 ~IRLRt~k~Dv~~V~l~~~d~~~~~~~~~~~~~~M~k~~--------~~~~fDyye~~l~~~~~r~~Y~F~l~~~~~~~~ 95 (120)
T PF02903_consen 24 HIRLRTAKNDVEKVFLVYGDPYEEEGKWTYKSVEMEKIA--------SDELFDYYEATLKLPEKRLRYYFELEDGGETYY 95 (120)
T ss_dssp EEEEEEETTT-SEEEEEEEETTSETTCECEEEEEEEEEE--------EESSEEEEEEEEE-TTSEEEEEEEEEETTEEEE
T ss_pred EEEEEecCCCCCEEEEEECCCccccccceEEEEEeEEEE--------eCCCeEEEEEEEECCCCeEEEEEEEEeCCEEEE
Confidence 4444443 357889885 666666 1 235687642 12234588999999999888888873 44 54
Q ss_pred eCCCC
Q 009633 510 VDPQR 514 (530)
Q Consensus 510 ~DPdn 514 (530)
.+..-
T Consensus 96 y~~~G 100 (120)
T PF02903_consen 96 YGERG 100 (120)
T ss_dssp EETTE
T ss_pred EeCCc
Confidence 44433
No 58
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=51.25 E-value=19 Score=41.34 Aligned_cols=52 Identities=29% Similarity=0.339 Sum_probs=43.7
Q ss_pred hHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhhhccchhhccccchH
Q 009633 375 IDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDE 426 (530)
Q Consensus 375 i~~lk~MlhQkele~~rlKeqie~~K~aLavl~~k~~~ei~eAqkLLseKd~ 426 (530)
|++||..+-|+++|+++||..||.+.-++.-+....-.++.-...||-.+.+
T Consensus 116 iEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~pkl~LP~sllP~~~p 167 (907)
T KOG2264|consen 116 IEELKRLIPQKQLELSALKGEIEQAQRQLEELRETNNPKLFLPFSLLPLQIP 167 (907)
T ss_pred HHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcCCceeeccccCcccCc
Confidence 5678999999999999999999999999988887777788777777755544
No 59
>PF11896 DUF3416: Domain of unknown function (DUF3416); InterPro: IPR021828 This presumed domain is functionally uncharacterised. This domain is found in bacteria and archaea. This domain is about 190 amino acids in length. This domain is found associated with PF00128 from PFAM. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3ZT7_A 3ZST_B 3ZT6_A 3ZSS_D 3ZT5_B.
Probab=49.63 E-value=12 Score=36.41 Aligned_cols=40 Identities=33% Similarity=0.784 Sum_probs=23.7
Q ss_pred CCCCcccccCCCCCCCccccccccCCCcEEEEEEe-CCeeEEEEEE--EC--CEeeeC
Q 009633 459 NGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWL-YPGTYEIKFI--VD--GQWKVD 511 (530)
Q Consensus 459 NNWk~~IpMeKd~ss~~~a~~g~kksGvWStTL~L-PPGrYEYKFI--VD--GEW~~D 511 (530)
..|+ .+||... .+..|...+.+ .+|.|+|+.. +| ++|.++
T Consensus 55 ~~w~-~vpM~~~------------gnDrW~a~f~~~~~G~~~f~VeAW~D~faTW~~~ 99 (187)
T PF11896_consen 55 REWQ-EVPMTPL------------GNDRWEASFTPDRPGRYEFRVEAWVDHFATWRHD 99 (187)
T ss_dssp -B-----B-EES------------TS-EEEEEEE--SSEEEEEEEEEEE-HHHHHHHH
T ss_pred Ccce-eeccccC------------CCCEEEEEEECCCceeEEEEEEEEeccHHHHHHh
Confidence 4586 5899863 68899999987 5899999986 56 456543
No 60
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=47.99 E-value=21 Score=41.48 Aligned_cols=41 Identities=24% Similarity=0.492 Sum_probs=31.0
Q ss_pred EEEEEecC-CceEEEEeeeCCCCccc-ccCCCCCCCccccccccCCCcEEEEEE
Q 009633 441 VEIQYSGD-GEIVEVAGSFNGWHHRI-KMDPLPSSSIIEPIRSRKSRLWSTVLW 492 (530)
Q Consensus 441 VTFrW~g~-AkeVeVTGSFNNWk~~I-pMeKd~ss~~~a~~g~kksGvWStTL~ 492 (530)
|.|+-.++ ++.|.++|+||+|+... .|.. +...|.|++.+.
T Consensus 115 v~~~ewaP~a~~~s~~gd~n~W~~~~~~~~~-----------k~~~g~w~i~l~ 157 (757)
T KOG0470|consen 115 VDFTEWAPLAEAVSLIGDFNNWNPSSNELKP-----------KDDLGVWEIDLP 157 (757)
T ss_pred eeeeeecccccccccccccCCCCCcccccCc-----------ccccceeEEecC
Confidence 77777776 89999999999998652 2331 146789998876
No 61
>COG1725 Predicted transcriptional regulators [Transcription]
Probab=47.93 E-value=26 Score=32.49 Aligned_cols=77 Identities=23% Similarity=0.283 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHhhCCCCC-CCCChHHHhhhcchhHHHHHHhhhHHHHHHHHhcCCCCCCcchhccccccccchhhhhhh
Q 009633 62 EELYNDLREFLSTVGLSES-HVPSMKELSAHGRDDLANIVRRRGYKFIRQLLKSSTKPGFNGFVAEKSLAGQDEKVANEV 140 (530)
Q Consensus 62 ~el~~~~~ef~~~~~l~~~-h~psmkels~hgr~dlanivrrrgyk~i~~l~~~s~~~~~~~~~~e~~~~~~~~~~~~~~ 140 (530)
+.+++-|++=+.+=-|++| .|||+.||..+=.+-..- | +|+|+-+.+.===-+.-|..-||+|...+.-+....-.+
T Consensus 14 ~QI~~qIk~~I~~g~l~pGdkLPSvRelA~~~~VNpnT-v-~raY~eLE~eG~i~t~rg~G~fV~~~~~~~~~~~~~~~~ 91 (125)
T COG1725 14 EQIANQIKEQIASGELKPGDKLPSVRELAKDLGVNPNT-V-QRAYQELEREGIVETKRGKGTFVTEDAKEILDQLKRELA 91 (125)
T ss_pred HHHHHHHHHHHHhCCcCCCCCCCcHHHHHHHhCCCHHH-H-HHHHHHHHHCCCEEEecCeeEEEcCCchhhHHHHHHHHH
Confidence 4577777777777777776 699999999877666544 3 468876655322234566677888876554444443333
No 62
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=44.28 E-value=34 Score=25.02 Aligned_cols=30 Identities=23% Similarity=0.572 Sum_probs=23.7
Q ss_pred HHHHHHHHhhCCCCCCCCChHHHhhhcchhHHHHHHh
Q 009633 66 NDLREFLSTVGLSESHVPSMKELSAHGRDDLANIVRR 102 (530)
Q Consensus 66 ~~~~ef~~~~~l~~~h~psmkels~hgr~dlanivrr 102 (530)
+||++||...|+|-..-. .-|++|-+.||+
T Consensus 7 ~~L~~wL~~~gi~~~~~~-------~~rd~Ll~~~k~ 36 (38)
T PF10281_consen 7 SDLKSWLKSHGIPVPKSA-------KTRDELLKLAKK 36 (38)
T ss_pred HHHHHHHHHcCCCCCCCC-------CCHHHHHHHHHH
Confidence 689999999999865433 568888888875
No 63
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=41.64 E-value=50 Score=35.67 Aligned_cols=26 Identities=12% Similarity=0.288 Sum_probs=22.4
Q ss_pred cCCCcEEEEEE--eCCeeEEEEEEECCE
Q 009633 482 RKSRLWSTVLW--LYPGTYEIKFIVDGQ 507 (530)
Q Consensus 482 kksGvWStTL~--LPPGrYEYKFIVDGE 507 (530)
..+|+|+..+. .+||.|+..+.+||.
T Consensus 168 p~DGvFT~~l~l~~~~G~Y~~~v~~~n~ 195 (374)
T TIGR03503 168 PGDGIFTGEFNLDVAPGEYRPTYQSRNP 195 (374)
T ss_pred CCCceEEEEeeccCCCceEEEEEEEcCc
Confidence 47899998875 689999999999984
No 64
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=40.16 E-value=81 Score=29.42 Aligned_cols=50 Identities=14% Similarity=0.185 Sum_probs=34.7
Q ss_pred ceEEEEEEecC-CceEEEEeeeCCCCcccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEE
Q 009633 438 LEVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIK 501 (530)
Q Consensus 438 LrpVTFrW~g~-AkeVeVTGSFNNWk~~IpMeKd~ss~~~a~~g~kksGvWStTL~LPPGrYEYK 501 (530)
--+|+|.|... +..|...+...-|... .+. . +.+-.|+.++.- ||.|.|+
T Consensus 61 GDTVtw~~~d~~~Hnv~~~~~~~~~g~~-~~~-~-----------~~~~s~~~Tfe~-~G~Y~Y~ 111 (128)
T COG3794 61 GDTVTWVNTDSVGHNVTAVGGMDPEGSG-TLK-A-----------GINESFTHTFET-PGEYTYY 111 (128)
T ss_pred CCEEEEEECCCCCceEEEeCCCCccccc-ccc-c-----------CCCcceEEEecc-cceEEEE
Confidence 35899999887 9999999988555432 221 1 234567777665 9999885
No 65
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=35.98 E-value=39 Score=26.37 Aligned_cols=44 Identities=23% Similarity=0.405 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhhCCCCC-CCCChHHHhhhcchhHHHHHHhhhHHH
Q 009633 62 EELYNDLREFLSTVGLSES-HVPSMKELSAHGRDDLANIVRRRGYKF 107 (530)
Q Consensus 62 ~el~~~~~ef~~~~~l~~~-h~psmkels~hgr~dlanivrrrgyk~ 107 (530)
+.++..|++.+.+-.+|.| .+||..+|+.+= +.....=|+.|+.
T Consensus 3 ~~i~~~l~~~I~~g~~~~g~~lps~~~la~~~--~vsr~tvr~al~~ 47 (64)
T PF00392_consen 3 EQIYDQLRQAILSGRLPPGDRLPSERELAERY--GVSRTTVREALRR 47 (64)
T ss_dssp HHHHHHHHHHHHTTSS-TTSBE--HHHHHHHH--TS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCEeCCHHHHHHHh--ccCCcHHHHHHHH
Confidence 4688999999999999987 789999998753 3333333444443
No 66
>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome. All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin.
Probab=34.00 E-value=36 Score=28.52 Aligned_cols=34 Identities=18% Similarity=0.270 Sum_probs=28.7
Q ss_pred CCCCCCCChHHHhhhcchhHHHHHHhhhHHHHHHH
Q 009633 77 LSESHVPSMKELSAHGRDDLANIVRRRGYKFIRQL 111 (530)
Q Consensus 77 l~~~h~psmkels~hgr~dlanivrrrgyk~i~~l 111 (530)
+|..|++++.+|.+..+.+|+.+++ .+.+.+++.
T Consensus 42 iPk~h~~~~~~l~~~~~~~l~~~~~-~~~~~l~~~ 75 (104)
T cd01278 42 IPKEHIASLKALTKEDVPLLEHMET-VGREKLLRS 75 (104)
T ss_pred EecCCCCChHHCCHhHHHHHHHHHH-HHHHHHHHH
Confidence 5888999999999999999999988 676655554
No 67
>PRK10785 maltodextrin glucosidase; Provisional
Probab=33.81 E-value=1.5e+02 Score=33.23 Aligned_cols=62 Identities=13% Similarity=0.147 Sum_probs=39.1
Q ss_pred ceEEEEEEecC--CceEEEEeeeCCCCcccccCCCCCCCccccccccCCCcEEEEEEeC--CeeEEEEEEE--CCE
Q 009633 438 LEVVEIQYSGD--GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLY--PGTYEIKFIV--DGQ 507 (530)
Q Consensus 438 LrpVTFrW~g~--AkeVeVTGSFNNWk~~IpMeKd~ss~~~a~~g~kksGvWStTL~LP--PGrYEYKFIV--DGE 507 (530)
...++++...+ ...|.|.=.+++-...++|.+... ......|.+++.++ +|++.|.|.+ +|+
T Consensus 20 ~~~~~lr~~~~~~~~~v~l~~~~~~~~~~~~m~~~~~--------~~~~~~~~~~~~~~~~~~~~~Y~F~l~~~~~ 87 (598)
T PRK10785 20 QLLITLWLTGEDPPQRVMLRCEPDNEEYLLPMEKQRS--------QPQVTAWRASLPLNSGQPRRRYSFKLLWHDR 87 (598)
T ss_pred EEEEEEEEcCCCceEEEEEEEEcCCCEEEEEeEEeec--------CCCceEEEEEEEcCCCCceEEEEEEEEeCCE
Confidence 34555554432 568888665566555577886521 11223699999885 7888888888 554
No 68
>PF00730 HhH-GPD: HhH-GPD superfamily base excision DNA repair protein This entry corresponds to Endonuclease III This entry corresponds to Alkylbase DNA glycosidase; InterPro: IPR003265 Endonuclease III (4.2.99.18 from EC) is a DNA repair enzyme which removes a number of damaged pyrimidines from DNA via its glycosylase activity and also cleaves the phosphodiester backbone at apurinic / apyrimidinic sites via a beta-elimination mechanism [, ]. The structurally related DNA glycosylase MutY recognises and excises the mutational intermediate 8-oxoguanine-adenine mispair []. The 3-D structures of Escherichia coli endonuclease III [] and catalytic domain of MutY [] have been determined. The structures contain two all-alpha domains: a sequence-continuous, six-helix domain (residues 22-132) and a Greek-key, four-helix domain formed by one N-terminal and three C-terminal helices (residues 1-21 and 133-211) together with the [Fe4S4] cluster. The cluster is bound entirely within the C-terminal loop by four cysteine residues with a ligation pattern Cys-(Xaa)6-Cys-(Xaa)2-Cys-(Xaa)5-Cys which is distinct from all other known Fe4S4 proteins. This structural motif is referred to as a [Fe4S4] cluster loop (FCL) []. Two DNA-binding motifs have been proposed, one at either end of the interdomain groove: the helix-hairpin-helix (HhH) and FCL motifs (see IPR003651 from INTERPRO). The primary role of the iron-sulphur cluster appears to involve positioning conserved basic residues for interaction with the DNA phosphate backbone by forming the loop of the FCL motif [, ]. The HhH-GPD domain gets its name from its hallmark helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate. This domain is found in a diverse range of structurally related DNA repair proteins that include: endonuclease III, 4.2.99.18 from EC and DNA glycosylase MutY, an A/G-specific adenine glycosylase. Both of these enzymes have a C-terminal iron-sulphur cluster loop (FCL). The methyl-CPG binding protein (MBD4) also contain a related domain that is a thymine DNA glycosylase. The family also includes DNA-3-methyladenine glycosylase II 3.2.2.21 from EC, 8-oxoguanine DNA glycosylases and other members of the AlkA family.; GO: 0006284 base-excision repair; PDB: 3F0Z_A 3I0X_A 3F10_A 3I0W_A 3S6I_D 3N5N_Y 1PU7_A 1PU8_B 1PU6_B 1NGN_A ....
Probab=33.37 E-value=41 Score=28.14 Aligned_cols=36 Identities=19% Similarity=0.498 Sum_probs=31.6
Q ss_pred HHHHHHHHhhCCCCCCCCChHHHhhhcchhHHHHHHhhhHH
Q 009633 66 NDLREFLSTVGLSESHVPSMKELSAHGRDDLANIVRRRGYK 106 (530)
Q Consensus 66 ~~~~ef~~~~~l~~~h~psmkels~hgr~dlanivrrrgyk 106 (530)
.-++.|...+| .|+.+.|.+-+..||..++|+.||.
T Consensus 16 ~~~~~l~~~~g-----~pt~~~l~~~~~~el~~~i~~~G~~ 51 (108)
T PF00730_consen 16 KIYRRLFERYG-----FPTPEALAEASEEELRELIRPLGFS 51 (108)
T ss_dssp HHHHHHHHHHS-----CSSHHHHHCSHHHHHHHHHTTSTSH
T ss_pred HHHHHHHHHhc-----CCCHHHHHhCCHHHHHHHhhccCCC
Confidence 34567788888 8999999999999999999999986
No 69
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=32.53 E-value=46 Score=24.24 Aligned_cols=33 Identities=27% Similarity=0.266 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhhCCCC-CCCCChHHHhhhcchhH
Q 009633 64 LYNDLREFLSTVGLSE-SHVPSMKELSAHGRDDL 96 (530)
Q Consensus 64 l~~~~~ef~~~~~l~~-~h~psmkels~hgr~dl 96 (530)
++..|+..+....+++ ..+||.+||+++=....
T Consensus 1 i~~~l~~~i~~~~~~~~~~l~s~~~la~~~~vs~ 34 (60)
T smart00345 1 VAERLREDIVSGELRPGDKLPSERELAAQLGVSR 34 (60)
T ss_pred CHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCCCH
Confidence 3567777777777654 46899999998754443
No 70
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=32.09 E-value=6 Score=34.74 Aligned_cols=23 Identities=39% Similarity=0.680 Sum_probs=18.3
Q ss_pred hHHHhhhcchhHHHHHHhhhHHH
Q 009633 85 MKELSAHGRDDLANIVRRRGYKF 107 (530)
Q Consensus 85 mkels~hgr~dlanivrrrgyk~ 107 (530)
+|.|..+|+.++...+|+.||+|
T Consensus 203 ~~Kl~~~~~~~~i~~~~~~Gy~~ 225 (226)
T TIGR02154 203 RKALNPFGLEDPVQTVRGAGYRF 225 (226)
T ss_pred HHhhccCCCCCcEEEecccceEe
Confidence 35677778888888889999976
No 71
>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=30.76 E-value=16 Score=31.22 Aligned_cols=13 Identities=62% Similarity=1.595 Sum_probs=0.0
Q ss_pred ccccCCCCCceeeEEEeec
Q 009633 19 LWQWHPPRKHLSFTICCAS 37 (530)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~ 37 (530)
+||||| |||+++.
T Consensus 47 ~~q~HP------FTIas~~ 59 (105)
T PF08022_consen 47 FWQWHP------FTIASSP 59 (105)
T ss_dssp -------------------
T ss_pred cccccc------cEeeccC
Confidence 799998 7775443
No 72
>PF04985 Phage_tube: Phage tail tube protein FII; InterPro: IPR006498 This entry is represented by Bacteriophage P2, FII, the major tail tube protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The tails of some phage are contractile. These sequences represent the tail tube, or tail core, protein of the contractile tail of phage P2, and homologous proteins from other phage.
Probab=29.38 E-value=2e+02 Score=26.59 Aligned_cols=54 Identities=15% Similarity=0.188 Sum_probs=34.6
Q ss_pred eEEEEeeeCCCCcccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEECCE--eeeCCCCCeeccCC
Q 009633 451 IVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQ--WKVDPQRESVTKGG 521 (530)
Q Consensus 451 eVeVTGSFNNWk~~IpMeKd~ss~~~a~~g~kksGvWStTL~LPPGrYEYKFIVDGE--W~~DPdnPtVtDgG 521 (530)
.+.+.|.+..|+.. .++. ++...+++++. .+.||+.|||+ +.+|..+.+..-+|
T Consensus 99 ~~~~~G~~~~~~~g-~~k~------------g~~~~~~~~~~----v~yyk~~idG~~~~eiD~~n~i~~vnG 154 (167)
T PF04985_consen 99 VAVIRGRIKSVDPG-EWKP------------GEKTETSIEFS----VTYYKLEIDGKEIIEIDKLNNIYRVNG 154 (167)
T ss_pred EEEEEEEEEeeCCc-ccCc------------CccccceEEEE----EEEEEEEECCEEEEEEECccCEEEECC
Confidence 46777888777532 2221 12334444443 58999999997 77899888765333
No 73
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=28.49 E-value=66 Score=36.26 Aligned_cols=32 Identities=19% Similarity=0.356 Sum_probs=24.6
Q ss_pred CCCcEEEEEEeCCe-eEEEEEEEC---CEeeeCCCC
Q 009633 483 KSRLWSTVLWLYPG-TYEIKFIVD---GQWKVDPQR 514 (530)
Q Consensus 483 ksGvWStTL~LPPG-rYEYKFIVD---GEW~~DPdn 514 (530)
.+|.+-+.+.++|| .|.|+|.|| |.+..-+..
T Consensus 96 ~DG~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~ 131 (563)
T KOG1263|consen 96 QDGVYITQCPIQPGENFTYRFTVKDQIGTLWYHSHV 131 (563)
T ss_pred ccCCccccCCcCCCCeEEEEEEeCCcceeEEEeecc
Confidence 35688899999999 899999999 554443333
No 74
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=27.93 E-value=22 Score=28.54 Aligned_cols=39 Identities=28% Similarity=0.477 Sum_probs=28.3
Q ss_pred ccccccHHHHHHHHHHHHhhCCCCCCCCChHHHhhhcchhHHHHHHhhhHHHHHHHHh
Q 009633 56 RKVKSNEELYNDLREFLSTVGLSESHVPSMKELSAHGRDDLANIVRRRGYKFIRQLLK 113 (530)
Q Consensus 56 ~~v~~~~el~~~~~ef~~~~~l~~~h~psmkels~hgr~dlanivrrrgyk~i~~l~~ 113 (530)
.+|++|++|...|+.... ..++..|.|..||.|-.+=|.
T Consensus 9 ~~~~~d~~L~~~l~~~~~-------------------~e~~~~lA~~~Gf~ft~~el~ 47 (64)
T TIGR03798 9 EKVKTDPDLREKLKAAED-------------------PEDRVAIAKEAGFEFTGEDLK 47 (64)
T ss_pred HHHHcCHHHHHHHHHcCC-------------------HHHHHHHHHHcCCCCCHHHHH
Confidence 467888888888776321 356788889999999665443
No 75
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=27.93 E-value=1.2e+02 Score=25.70 Aligned_cols=16 Identities=31% Similarity=0.468 Sum_probs=9.5
Q ss_pred CcEEEEE-EeCCeeEEE
Q 009633 485 RLWSTVL-WLYPGTYEI 500 (530)
Q Consensus 485 GvWStTL-~LPPGrYEY 500 (530)
..+++++ .++||.|+|
T Consensus 74 ~~~~~~f~~~~~G~y~~ 90 (104)
T PF13473_consen 74 ETATVTFTPLKPGEYEF 90 (104)
T ss_dssp -EEEEEEEE-S-EEEEE
T ss_pred CEEEEEEcCCCCEEEEE
Confidence 4566665 789999877
No 76
>COG0014 ProA Gamma-glutamyl phosphate reductase [Amino acid transport and metabolism]
Probab=27.20 E-value=30 Score=37.94 Aligned_cols=62 Identities=29% Similarity=0.454 Sum_probs=47.7
Q ss_pred ccccccHHHHHHHHHHHHhhCCCCCCCCCh--------HH-HhhhcchhHHHHHHhhhHHHHHHHHhcCCCCC
Q 009633 56 RKVKSNEELYNDLREFLSTVGLSESHVPSM--------KE-LSAHGRDDLANIVRRRGYKFIRQLLKSSTKPG 119 (530)
Q Consensus 56 ~~v~~~~el~~~~~ef~~~~~l~~~h~psm--------ke-ls~hgr~dlanivrrrgyk~i~~l~~~s~~~~ 119 (530)
--+.||..|+.-|++=|..+|||++.|.=+ .| |..-|-.|| |+-|=|..||+....+++-|-
T Consensus 150 ea~~Sn~ai~~~i~~aL~~~~lP~~aVqli~~~~R~~v~~ll~l~~yiD~--iIPRGg~~Li~~v~~~a~vPV 220 (417)
T COG0014 150 EAIHSNAAIVEVIQEALEKAGLPADAVQLIEDTDREEVLELLRLDGYIDL--VIPRGGAGLIRRVVENATVPV 220 (417)
T ss_pred HHhhhHHHHHHHHHHHHHHcCCCHHHhhhccCCCHHHHHHHHhhcCceeE--EEcCCcHHHHHHHHhCCcCCE
Confidence 457899999999999999999999876432 22 344555555 466778899999999998653
No 77
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=25.51 E-value=48 Score=25.06 Aligned_cols=17 Identities=24% Similarity=0.690 Sum_probs=13.8
Q ss_pred cchhHHHHHHhhhHHHH
Q 009633 92 GRDDLANIVRRRGYKFI 108 (530)
Q Consensus 92 gr~dlanivrrrgyk~i 108 (530)
-..++..|.|.+||.|=
T Consensus 28 ~~~e~~~lA~~~Gy~ft 44 (49)
T PF07862_consen 28 NPEEVVALAREAGYDFT 44 (49)
T ss_pred CHHHHHHHHHHcCCCCC
Confidence 44678889999999985
No 78
>PF14347 DUF4399: Domain of unknown function (DUF4399)
Probab=25.25 E-value=1.1e+02 Score=26.65 Aligned_cols=32 Identities=16% Similarity=0.152 Sum_probs=24.6
Q ss_pred CCcEEEEEEeCCeeEEEEEEECCEeeeCCCCCe
Q 009633 484 SRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRES 516 (530)
Q Consensus 484 sGvWStTL~LPPGrYEYKFIVDGEW~~DPdnPt 516 (530)
.|.=++.+.|+||+|....+. |.+.+-|..|.
T Consensus 50 ~Gqte~~I~L~PG~htLtl~~-~d~~h~~~~~~ 81 (87)
T PF14347_consen 50 KGQTELNIELPPGKHTLTLQL-GDGDHVPHDPP 81 (87)
T ss_pred CCEEEEEEEeCCCCEEEEEEe-CCCCcccCCCc
Confidence 455567789999999999887 66666666654
No 79
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.22 E-value=48 Score=34.76 Aligned_cols=31 Identities=35% Similarity=0.382 Sum_probs=24.6
Q ss_pred hhhhHHHHHHhhhHHHHHhHHHHHHHHHHHH
Q 009633 372 QLEIDHLKFMLHQKEMELSRLKEQIEKEKLA 402 (530)
Q Consensus 372 ~~Ei~~lk~MlhQkele~~rlKeqie~~K~a 402 (530)
..||++|+-|||||.+++..--.||-+-|+-
T Consensus 231 keeia~Lkk~L~qkdq~ileKdkqisnLKad 261 (305)
T KOG3990|consen 231 KEEIARLKKLLHQKDQLILEKDKQISNLKAD 261 (305)
T ss_pred HHHHHHHHHHHhhhHHHHHhhhhhhhccCcc
Confidence 4589999999999999887777776655543
No 80
>KOG0045 consensus Cytosolic Ca2+-dependent cysteine protease (calpain), large subunit (EF-Hand protein superfamily) [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=24.44 E-value=69 Score=36.46 Aligned_cols=27 Identities=22% Similarity=0.652 Sum_probs=23.0
Q ss_pred eCCeeEEEEEEECCEee---eCCCCCeecc
Q 009633 493 LYPGTYEIKFIVDGQWK---VDPQRESVTK 519 (530)
Q Consensus 493 LPPGrYEYKFIVDGEW~---~DPdnPtVtD 519 (530)
-+.|.|+|||.++|+|+ +|..-|+..+
T Consensus 114 ~yaGif~f~~w~~G~W~~VvIDD~LP~~~~ 143 (612)
T KOG0045|consen 114 NYAGIFHFRFWQNGEWVEVVIDDRLPTSNG 143 (612)
T ss_pred ccceEEEEEEEeCCeEEEEEeeeecceEcC
Confidence 45799999999999996 5888898764
No 81
>cd01276 PKCI_related Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members.
Probab=24.14 E-value=62 Score=26.92 Aligned_cols=44 Identities=14% Similarity=0.312 Sum_probs=33.4
Q ss_pred CCCCCCCChHHHhhhcchhHHHHHHhhhHHHHHHHHhcCCCCCCcch
Q 009633 77 LSESHVPSMKELSAHGRDDLANIVRRRGYKFIRQLLKSSTKPGFNGF 123 (530)
Q Consensus 77 l~~~h~psmkels~hgr~dlanivrrrgyk~i~~l~~~s~~~~~~~~ 123 (530)
+|.-|++++.+|++--+.+|+.+.+.- -++.+.+- ...+++|=.
T Consensus 40 iPk~H~~~~~dl~~~~~~~l~~~~~~~-~~~~~~~~--~~~~~~n~~ 83 (104)
T cd01276 40 IPKKHIASLSDATEEDEELLGHLLSAA-AKVAKDLG--IAEDGYRLV 83 (104)
T ss_pred EecceeCChHHcccccHHHHHHHHHHH-HHHHHHhC--CCCCCEEEE
Confidence 688899999999999999999998876 56666652 134566643
No 82
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=23.37 E-value=2.5e+02 Score=25.44 Aligned_cols=16 Identities=25% Similarity=0.329 Sum_probs=11.4
Q ss_pred eEEEEEEecCCceEEE
Q 009633 439 EVVEIQYSGDGEIVEV 454 (530)
Q Consensus 439 rpVTFrW~g~AkeVeV 454 (530)
-+|+|.|...+..|..
T Consensus 23 dTV~f~n~d~~Hnv~~ 38 (116)
T TIGR02375 23 DTVTFVPTDKGHNVET 38 (116)
T ss_pred CEEEEEECCCCeeEEE
Confidence 3788888777766654
No 83
>PF03801 Ndc80_HEC: HEC/Ndc80p family; InterPro: IPR005550 Members of this family are components of the mitotic spindle. It has been shown that Ndc80 from yeast is part of a complex called the Ndc80p complex []. This complex is thought to bind to the microtubules of the spindle.; PDB: 3IZ0_E 2VE7_B 2IGP_A.
Probab=21.07 E-value=76 Score=29.82 Aligned_cols=39 Identities=33% Similarity=0.451 Sum_probs=20.8
Q ss_pred cHHHHHHHHHHHHhhCCCCCCCCChHHHhhhcchhHHHHH
Q 009633 61 NEELYNDLREFLSTVGLSESHVPSMKELSAHGRDDLANIV 100 (530)
Q Consensus 61 ~~el~~~~~ef~~~~~l~~~h~psmkels~hgr~dlaniv 100 (530)
-.+.+.+|-+||.+-|-. .+-.++|.|..=-.-|..+|+
T Consensus 38 q~~~~~~I~~fL~~~~~~-~~~is~k~l~~Pt~kdf~~I~ 76 (157)
T PF03801_consen 38 QQECIRKIYEFLSEHGFE-SHPISPKTLKSPTQKDFVEIF 76 (157)
T ss_dssp HHHHHHHHHHHHHHTT---SS---TTTTSS--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCC-CccccccccCCCCHHHHHHHH
Confidence 457789999999999982 333344444443333444443
No 84
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=20.98 E-value=43 Score=33.33 Aligned_cols=51 Identities=31% Similarity=0.404 Sum_probs=38.1
Q ss_pred HHhhhHHHHHHHHhcCCCCCCcchhccccccccchhhhhhhh-cccccccccccccccc
Q 009633 100 VRRRGYKFIRQLLKSSTKPGFNGFVAEKSLAGQDEKVANEVE-DVSLSVEVSSVRDCFP 157 (530)
Q Consensus 100 vrrrgyk~i~~l~~~s~~~~~~~~~~e~~~~~~~~~~~~~~e-~~~~~~~~~~~~~~~~ 157 (530)
+-+-|||-||.|.+. .|+-|.-......+.++||| ...+-...-+....||
T Consensus 133 L~G~G~kti~~Lv~~-------~f~~e~~~Se~~~k~DYEaElR~lL~erg~~~~~~FP 184 (198)
T COG2117 133 LLGLGYKTIRRLVSA-------IFILEEGPSEKIEKADYEAELRYLLRERGTAPEDIFP 184 (198)
T ss_pred cccccHHHHHHHHHH-------HeeeeccccccccccchHHHHHHHHHHcCCChHHhcc
Confidence 457899999999874 46677777777888999999 6666555555556666
No 85
>cd01275 FHIT FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Fhit plays a very important role in the development of tumours. Infact, Fhit deletions are among the earliest and most frequent genetic alterations in the development of tumours.
Probab=20.55 E-value=80 Score=27.56 Aligned_cols=44 Identities=27% Similarity=0.406 Sum_probs=32.7
Q ss_pred CCCCCCCChHHHhhhcchhHHHHHHhhhHHHHHHHHhcCCCCCCcchh
Q 009633 77 LSESHVPSMKELSAHGRDDLANIVRRRGYKFIRQLLKSSTKPGFNGFV 124 (530)
Q Consensus 77 l~~~h~psmkels~hgr~dlanivrrrgyk~i~~l~~~s~~~~~~~~~ 124 (530)
+|-.|++++.+|+..-+.+|+.++++-. +.+++++. ..++|=+.
T Consensus 40 iPk~H~~~~~~L~~~e~~~l~~~~~~v~-~~l~~~~~---~~~~n~~~ 83 (126)
T cd01275 40 VPYRHVPRLEDLTPEEIADLFKLVQLAM-KALKVVYK---PDGFNIGI 83 (126)
T ss_pred EeccccCChhhCCHHHHHHHHHHHHHHH-HHHHHhcC---CCceEEEE
Confidence 5888999999999999999999997754 44454442 45555444
No 86
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=20.23 E-value=71 Score=26.85 Aligned_cols=16 Identities=38% Similarity=0.825 Sum_probs=13.7
Q ss_pred cHHHHHHHHHHHHhhC
Q 009633 61 NEELYNDLREFLSTVG 76 (530)
Q Consensus 61 ~~el~~~~~ef~~~~~ 76 (530)
.+++..+||+|+|..|
T Consensus 4 re~i~~~iR~~fs~lG 19 (62)
T PF15513_consen 4 REEITAEIRQFFSQLG 19 (62)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 4788899999999887
No 87
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=20.21 E-value=2.9e+02 Score=21.66 Aligned_cols=20 Identities=25% Similarity=0.443 Sum_probs=13.8
Q ss_pred EEEEEecCCceEEEEeeeCC
Q 009633 441 VEIQYSGDGEIVEVAGSFNG 460 (530)
Q Consensus 441 VTFrW~g~AkeVeVTGSFNN 460 (530)
+.+.-.-.+-.|+|-|.+-|
T Consensus 4 l~V~s~p~gA~V~vdg~~~G 23 (71)
T PF08308_consen 4 LRVTSNPSGAEVYVDGKYIG 23 (71)
T ss_pred EEEEEECCCCEEEECCEEec
Confidence 34444445788999988777
Done!