Query 009634
Match_columns 530
No_of_seqs 307 out of 2042
Neff 8.2
Searched_HMMs 46136
Date Thu Mar 28 15:29:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009634.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009634hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00165 aspartyl protease; Pr 100.0 4.1E-65 8.8E-70 540.4 41.4 368 45-530 63-447 (482)
2 cd05490 Cathepsin_D2 Cathepsin 100.0 2.8E-62 6.1E-67 501.0 38.3 324 99-528 1-325 (325)
3 cd06098 phytepsin Phytepsin, a 100.0 2.5E-62 5.5E-67 499.3 36.3 317 95-528 1-317 (317)
4 cd05486 Cathespin_E Cathepsin 100.0 1.4E-61 3E-66 493.9 36.1 316 105-528 1-316 (316)
5 cd05487 renin_like Renin stimu 100.0 3.7E-61 8E-66 492.7 39.4 325 97-529 1-326 (326)
6 cd05485 Cathepsin_D_like Cathe 100.0 1.6E-60 3.5E-65 488.3 38.3 327 95-528 2-329 (329)
7 cd05478 pepsin_A Pepsin A, asp 100.0 2.9E-60 6.2E-65 484.4 37.9 316 96-528 2-317 (317)
8 cd05488 Proteinase_A_fungi Fun 100.0 6.8E-60 1.5E-64 482.1 37.7 320 95-528 1-320 (320)
9 cd05477 gastricsin Gastricsins 100.0 1.9E-59 4.2E-64 478.6 38.8 317 102-529 1-318 (318)
10 PTZ00147 plasmepsin-1; Provisi 100.0 6.1E-59 1.3E-63 489.7 39.8 324 90-530 125-450 (453)
11 PTZ00013 plasmepsin 4 (PM4); P 100.0 5.2E-58 1.1E-62 481.7 39.5 325 89-530 123-449 (450)
12 PF00026 Asp: Eukaryotic aspar 100.0 3.7E-55 8E-60 446.2 30.5 316 104-529 1-317 (317)
13 cd06097 Aspergillopepsin_like 100.0 2.1E-51 4.6E-56 411.4 31.0 219 105-331 1-225 (278)
14 cd05473 beta_secretase_like Be 100.0 1.7E-50 3.7E-55 420.0 32.2 316 103-530 2-346 (364)
15 KOG1339 Aspartyl protease [Pos 100.0 3.8E-50 8.2E-55 421.4 32.7 320 93-529 35-392 (398)
16 PLN03146 aspartyl protease fam 100.0 1E-49 2.2E-54 420.7 34.0 305 101-530 81-427 (431)
17 cd06096 Plasmepsin_5 Plasmepsi 100.0 1.3E-49 2.9E-54 407.2 31.1 283 103-530 2-324 (326)
18 cd05474 SAP_like SAPs, pepsin- 100.0 1.1E-48 2.3E-53 395.1 33.3 278 104-529 2-295 (295)
19 cd05472 cnd41_like Chloroplast 100.0 3.6E-48 7.8E-53 392.2 29.8 288 104-530 1-298 (299)
20 cd05471 pepsin_like Pepsin-lik 100.0 6.3E-46 1.4E-50 371.9 34.6 227 105-333 1-231 (283)
21 cd05476 pepsin_A_like_plant Ch 100.0 2.3E-45 5E-50 365.2 28.2 248 104-530 1-264 (265)
22 cd05475 nucellin_like Nucellin 100.0 4E-45 8.8E-50 364.9 29.1 258 103-530 1-272 (273)
23 cd05489 xylanase_inhibitor_I_l 100.0 1.2E-41 2.7E-46 351.5 27.8 313 111-529 2-361 (362)
24 cd05470 pepsin_retropepsin_lik 99.9 7.7E-22 1.7E-26 169.1 13.2 108 107-215 1-109 (109)
25 PF14543 TAXi_N: Xylanase inhi 99.9 9.5E-21 2.1E-25 174.3 16.1 136 105-263 1-164 (164)
26 PF14541 TAXi_C: Xylanase inhi 99.8 1.1E-18 2.3E-23 160.4 12.6 153 283-528 1-161 (161)
27 cd05483 retropepsin_like_bacte 97.9 3.4E-05 7.4E-10 63.6 7.1 92 104-217 2-94 (96)
28 PF05184 SapB_1: Saposin-like 97.6 4.5E-05 9.9E-10 52.1 2.4 38 402-439 2-39 (39)
29 TIGR02281 clan_AA_DTGA clan AA 97.1 0.0037 8E-08 54.3 8.9 101 95-217 2-103 (121)
30 PF13650 Asp_protease_2: Aspar 96.3 0.031 6.7E-07 45.1 8.7 88 107-216 1-89 (90)
31 PF03489 SapB_2: Saposin-like 95.6 0.0079 1.7E-07 39.9 1.8 33 339-371 3-35 (35)
32 PF11925 DUF3443: Protein of u 95.5 0.21 4.5E-06 50.9 12.5 199 105-321 24-272 (370)
33 COG3577 Predicted aspartyl pro 95.5 0.087 1.9E-06 49.2 8.9 91 91-196 92-183 (215)
34 cd05479 RP_DDI RP_DDI; retrope 95.1 0.16 3.4E-06 44.2 8.9 96 96-216 8-106 (124)
35 KOG1340 Prosaposin [Lipid tran 94.2 0.064 1.4E-06 51.1 4.6 89 338-439 77-166 (218)
36 cd05479 RP_DDI RP_DDI; retrope 93.1 0.63 1.4E-05 40.5 8.8 25 502-526 100-124 (124)
37 cd05484 retropepsin_like_LTR_2 92.9 0.66 1.4E-05 37.8 8.1 75 105-197 1-78 (91)
38 TIGR02281 clan_AA_DTGA clan AA 91.4 3 6.5E-05 36.1 10.7 37 280-326 8-44 (121)
39 PF08284 RVP_2: Retroviral asp 90.7 1 2.2E-05 39.8 7.3 27 502-528 105-131 (135)
40 cd06095 RP_RTVL_H_like Retrope 90.2 1.7 3.7E-05 35.0 7.8 81 108-217 2-84 (86)
41 TIGR03698 clan_AA_DTGF clan AA 86.8 4.2 9.1E-05 34.3 8.2 24 501-524 84-107 (107)
42 smart00741 SapB Saposin (B) Do 86.5 0.57 1.2E-05 36.1 2.6 37 403-439 2-38 (76)
43 PF13975 gag-asp_proteas: gag- 82.7 2.2 4.8E-05 33.1 4.3 34 101-136 5-38 (72)
44 PF07966 A1_Propeptide: A1 Pro 74.5 2.1 4.7E-05 27.0 1.5 24 46-69 1-24 (29)
45 PF13650 Asp_protease_2: Aspar 74.1 4.5 9.8E-05 32.1 3.9 29 291-326 3-31 (90)
46 PF00077 RVP: Retroviral aspar 70.7 5.2 0.00011 32.9 3.5 29 106-136 7-35 (100)
47 PF13975 gag-asp_proteas: gag- 69.7 8.4 0.00018 29.8 4.3 30 290-326 12-41 (72)
48 smart00741 SapB Saposin (B) Do 68.9 3.5 7.6E-05 31.6 2.0 35 337-371 42-76 (76)
49 cd05484 retropepsin_like_LTR_2 66.0 8.8 0.00019 31.0 3.9 30 290-326 4-33 (91)
50 PF07172 GRP: Glycine rich pro 65.3 5 0.00011 33.1 2.3 25 17-43 1-25 (95)
51 cd05483 retropepsin_like_bacte 62.7 13 0.00028 29.7 4.4 30 290-326 6-35 (96)
52 KOG1340 Prosaposin [Lipid tran 60.5 4.7 0.0001 38.6 1.5 44 330-373 162-205 (218)
53 cd06095 RP_RTVL_H_like Retrope 56.6 14 0.00031 29.5 3.5 29 291-326 3-31 (86)
54 cd05482 HIV_retropepsin_like R 55.7 15 0.00032 29.8 3.4 26 108-135 2-27 (87)
55 PF12384 Peptidase_A2B: Ty3 tr 54.6 42 0.0009 30.6 6.3 25 303-327 44-68 (177)
56 PF09668 Asp_protease: Asparty 48.7 46 0.00099 28.9 5.5 91 102-216 22-114 (124)
57 PF00077 RVP: Retroviral aspar 41.9 27 0.00059 28.5 3.1 27 290-323 9-35 (100)
58 PF12384 Peptidase_A2B: Ty3 tr 41.4 32 0.0007 31.3 3.5 29 106-134 34-62 (177)
59 PF08284 RVP_2: Retroviral asp 38.9 2E+02 0.0043 25.2 8.2 29 103-133 20-48 (135)
60 COG5550 Predicted aspartyl pro 37.9 20 0.00044 30.9 1.7 22 306-327 28-50 (125)
61 PF09668 Asp_protease: Asparty 37.2 45 0.00098 29.0 3.7 30 290-326 28-57 (124)
62 COG3577 Predicted aspartyl pro 37.1 76 0.0017 30.0 5.4 30 290-326 109-138 (215)
63 cd05481 retropepsin_like_LTR_1 35.5 40 0.00087 27.5 3.1 23 305-327 11-33 (93)
64 cd05470 pepsin_retropepsin_lik 27.5 54 0.0012 27.0 2.7 19 303-321 10-28 (109)
65 cd06094 RP_Saci_like RP_Saci_l 23.0 2.6E+02 0.0056 22.8 5.5 21 116-136 8-28 (89)
66 TIGR03698 clan_AA_DTGF clan AA 21.5 97 0.0021 26.0 3.0 66 107-188 2-73 (107)
No 1
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=4.1e-65 Score=540.43 Aligned_cols=368 Identities=36% Similarity=0.686 Sum_probs=304.9
Q ss_pred ceEEEeeeeecchhhhhhccCcccchhhhcccccccccCCCCCCCCCcceEecccccCceEEEEEEEcCCCceEEEEEcC
Q 009634 45 GLVRIGLRKKKLDQINRLVGQTVSKEEETMRTPVRRYNLHGSLGDSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDT 124 (530)
Q Consensus 45 ~~~~ipl~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~pl~n~~~~~Y~~~i~iGtP~Q~~~v~lDT 124 (530)
.++||||+|.++.++...+.+...-..+.+. .+.+..............||.|+.|.+|+++|+||||||+|.|++||
T Consensus 63 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~n~~d~~Y~~~I~IGTPpQ~f~Vv~DT 140 (482)
T PTZ00165 63 PAHKVELHRFALLKKKRKKNSEKGYISRVLT--KHKYLETKDPNGLQYLQQDLLNFHNSQYFGEIQVGTPPKSFVVVFDT 140 (482)
T ss_pred heEEeeeEEcchHHHhhhhHHHHHhhhhhhh--ccccccccccccccccceecccccCCeEEEEEEeCCCCceEEEEEeC
Confidence 6899999997666654433311100001110 11111101000013467899999999999999999999999999999
Q ss_pred CCCCceeeCCCCCCCcCcCCCCccCCCCCCCcee--CCc---EEEEEecCceEEEEEEEEEEEECCeEecceeEEEEEec
Q 009634 125 GSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKR--NGT---SAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKE 199 (530)
Q Consensus 125 GSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~--~~~---~~~~~Yg~Gs~~G~~~~Dtv~lg~~~~~~~~fg~~~~~ 199 (530)
||+++||++..|. ...|..++.|||++|+||+. .+. .+.+.|++|++.|.+++|+|++|+..+++|.||++...
T Consensus 141 GSS~lWVps~~C~-~~~C~~~~~yd~s~SSTy~~~~~~~~~~~~~i~YGsGs~~G~l~~DtV~ig~l~i~~q~FG~a~~~ 219 (482)
T PTZ00165 141 GSSNLWIPSKECK-SGGCAPHRKFDPKKSSTYTKLKLGDESAETYIQYGTGECVLALGKDTVKIGGLKVKHQSIGLAIEE 219 (482)
T ss_pred CCCCEEEEchhcC-cccccccCCCCccccCCcEecCCCCccceEEEEeCCCcEEEEEEEEEEEECCEEEccEEEEEEEec
Confidence 9999999999997 56899999999999999998 555 67899999999999999999999999999999999987
Q ss_pred ccccccccccceeEecccCccc---cCCCCchHHHHHhCCCCCCCeEEEEecCCCCCCCCeEEEECcccCCCc--ccceE
Q 009634 200 ASITFLAAKFDGILGLGFQEIS---IGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGEEGGEIVFGGVDPDHY--KGEHT 274 (530)
Q Consensus 200 ~~~~~~~~~~~GIlGLg~~~~s---~~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~~~G~L~fGg~D~~~~--~g~l~ 274 (530)
++..|...++|||||||++..+ .....|++++|++||+|++++||+||.++.+ .+|+|+|||+|+.++ .|++.
T Consensus 220 s~~~f~~~~~DGILGLg~~~~s~~s~~~~~p~~~~l~~qgli~~~~FS~yL~~~~~--~~G~l~fGGiD~~~~~~~g~i~ 297 (482)
T PTZ00165 220 SLHPFADLPFDGLVGLGFPDKDFKESKKALPIVDNIKKQNLLKRNIFSFYMSKDLN--QPGSISFGSADPKYTLEGHKIW 297 (482)
T ss_pred cccccccccccceeecCCCcccccccCCCCCHHHHHHHcCCcccceEEEEeccCCC--CCCEEEeCCcCHHHcCCCCceE
Confidence 6666777789999999998873 3457889999999999999999999986532 379999999999877 57899
Q ss_pred EEeccCCCceEEEEceEEECCeeeeecCCCceEEEeCCCCCccccHHHHHHHHHHhccCcccccchhhHHhhhhhHHHHH
Q 009634 275 YVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASGVISQECKTLVDQYGKTILEM 354 (530)
Q Consensus 275 ~~p~~~~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDSGTt~i~lP~~~~~~l~~~i~~~~~~~~~c~~~~~~y~~~~~~~ 354 (530)
|+|+.+.++|+|.+++|+++++.+..+...+.|++||||+++++|++++++|.+++++.
T Consensus 298 ~~Pv~~~~yW~i~l~~i~vgg~~~~~~~~~~~aIiDTGTSli~lP~~~~~~i~~~i~~~--------------------- 356 (482)
T PTZ00165 298 WFPVISTDYWEIEVVDILIDGKSLGFCDRKCKAAIDTGSSLITGPSSVINPLLEKIPLE--------------------- 356 (482)
T ss_pred EEEccccceEEEEeCeEEECCEEeeecCCceEEEEcCCCccEeCCHHHHHHHHHHcCCc---------------------
Confidence 99999999999999999999988876667789999999999999999999999887543
Q ss_pred HHhccCcccccccCcccccCCCccccccceeeeccCCCCCCCCCCCcccchhhHHHHHHHHHHhhccchhHHHhhhhhcc
Q 009634 355 LIAETQPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSACEMAVIWMQNKLRRNETADQILNYVNQL 434 (530)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~ 434 (530)
T Consensus 357 -------------------------------------------------------------------------------- 356 (482)
T PTZ00165 357 -------------------------------------------------------------------------------- 356 (482)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCeeeeCCCCCCCCcEEEEECCE-----EEEeCcCcceeeec--ccccceEEeeEEecccCCCCCCeeeeCH
Q 009634 435 CDRLPSPNGESAVDCDNLSSMPNVSFTIGGK-----VFDLAPNEYVLEVG--EGVAAQCISGFTAFDVAPPRGPLWILGD 507 (530)
Q Consensus 435 c~~~~~~~~~~~~~C~~~~~~P~i~f~fgg~-----~~~l~p~~y~~~~~--~~~~~~C~~~~~~~~~~~~~~~~~ILG~ 507 (530)
.+|+....+|+|+|+|+|. +|.++|++|+++.. ......|+++|..++.+.+.++.||||+
T Consensus 357 ------------~~C~~~~~lP~itf~f~g~~g~~v~~~l~p~dYi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd 424 (482)
T PTZ00165 357 ------------EDCSNKDSLPRISFVLEDVNGRKIKFDMDPEDYVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGN 424 (482)
T ss_pred ------------ccccccccCCceEEEECCCCCceEEEEEchHHeeeecccCCCCCCeEEEEEEECCCCCCCCceEEEch
Confidence 2687777899999999864 89999999999752 3345689999999887666678999999
Q ss_pred HHhcceEEEEeCCCCeEEEEEcC
Q 009634 508 VFMGRYHTVFDYGNLSIGFAEAA 530 (530)
Q Consensus 508 ~flr~~yvvfD~~~~rIGfA~a~ 530 (530)
+|||+||+|||.+++|||||+++
T Consensus 425 ~Flr~yy~VFD~~n~rIGfA~a~ 447 (482)
T PTZ00165 425 NFIRKYYSIFDRDHMMVGLVPAK 447 (482)
T ss_pred hhheeEEEEEeCCCCEEEEEeec
Confidence 99999999999999999999985
No 2
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=2.8e-62 Score=500.96 Aligned_cols=324 Identities=53% Similarity=1.002 Sum_probs=286.1
Q ss_pred cccCceEEEEEEEcCCCceEEEEEcCCCCCceeeCCCCCC-CcCcCCCCccCCCCCCCceeCCcEEEEEecCceEEEEEE
Q 009634 99 NFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYF-SVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAISGFFS 177 (530)
Q Consensus 99 n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~WV~~~~C~~-~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~Gs~~G~~~ 177 (530)
|+.|.+|+++|+||||||++.|++||||+++||+|..|.. ...|..++.|+|++|+||+..++.+.+.|++|++.|.++
T Consensus 1 ~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G~~~G~~~ 80 (325)
T cd05490 1 NYMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIACWLHHKYNSSKSSTYVKNGTEFAIQYGSGSLSGYLS 80 (325)
T ss_pred CCcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCccccCcCcCCcccCcceeeCCcEEEEEECCcEEEEEEe
Confidence 5678999999999999999999999999999999999963 247888899999999999999999999999999999999
Q ss_pred EEEEEECCeEecceeEEEEEecccccccccccceeEecccCccccCCCCchHHHHHhCCCCCCCeEEEEecCCCCCCCCe
Q 009634 178 QDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGEEGG 257 (530)
Q Consensus 178 ~Dtv~lg~~~~~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~~~G 257 (530)
+|+|++|+..++++.||++....+..|....++||||||++..+.....|++++|++||.|.+++||+||.++.+....|
T Consensus 81 ~D~v~~g~~~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~FS~~L~~~~~~~~~G 160 (325)
T cd05490 81 QDTVSIGGLQVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDNIMAQKLVEQNVFSFYLNRDPDAQPGG 160 (325)
T ss_pred eeEEEECCEEEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCC
Confidence 99999999999999999998776544555678999999999888777788999999999999999999998754333479
Q ss_pred EEEECcccCCCcccceEEEeccCCCceEEEEceEEECCeeeeecCCCceEEEeCCCCCccccHHHHHHHHHHhccCcccc
Q 009634 258 EIVFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASGVIS 337 (530)
Q Consensus 258 ~L~fGg~D~~~~~g~l~~~p~~~~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDSGTt~i~lP~~~~~~l~~~i~~~~~~~ 337 (530)
+|+|||+|+++|.|++.|+|+.+..+|.|++++|.|++... .+.....++|||||+++++|++++++|.+++++.
T Consensus 161 ~l~~Gg~d~~~~~g~l~~~~~~~~~~w~v~l~~i~vg~~~~-~~~~~~~aiiDSGTt~~~~p~~~~~~l~~~~~~~---- 235 (325)
T cd05490 161 ELMLGGTDPKYYTGDLHYVNVTRKAYWQIHMDQVDVGSGLT-LCKGGCEAIVDTGTSLITGPVEEVRALQKAIGAV---- 235 (325)
T ss_pred EEEECccCHHHcCCceEEEEcCcceEEEEEeeEEEECCeee-ecCCCCEEEECCCCccccCCHHHHHHHHHHhCCc----
Confidence 99999999999999999999998899999999999988743 2345678999999999999999999999988543
Q ss_pred cchhhHHhhhhhHHHHHHHhccCcccccccCcccccCCCccccccceeeeccCCCCCCCCCCCcccchhhHHHHHHHHHH
Q 009634 338 QECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSACEMAVIWMQNK 417 (530)
Q Consensus 338 ~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (530)
T Consensus 236 -------------------------------------------------------------------------------- 235 (325)
T cd05490 236 -------------------------------------------------------------------------------- 235 (325)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhccchhHHHhhhhhccccCCCCCCCCeeeeCCCCCCCCcEEEEECCEEEEeCcCcceeeecccccceEEeeEEecccCC
Q 009634 418 LRRNETADQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAP 497 (530)
Q Consensus 418 ~~~~~t~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~fgg~~~~l~p~~y~~~~~~~~~~~C~~~~~~~~~~~ 497 (530)
+...+.|.++|+....+|+|+|+|+|+.++|+|++|+++........|+++|+..+...
T Consensus 236 ---------------------~~~~~~~~~~C~~~~~~P~i~f~fgg~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~ 294 (325)
T cd05490 236 ---------------------PLIQGEYMIDCEKIPTLPVISFSLGGKVYPLTGEDYILKVSQRGTTICLSGFMGLDIPP 294 (325)
T ss_pred ---------------------cccCCCEEecccccccCCCEEEEECCEEEEEChHHeEEeccCCCCCEEeeEEEECCCCC
Confidence 01235688999988889999999999999999999999865444568999998877655
Q ss_pred CCCCeeeeCHHHhcceEEEEeCCCCeEEEEE
Q 009634 498 PRGPLWILGDVFMGRYHTVFDYGNLSIGFAE 528 (530)
Q Consensus 498 ~~~~~~ILG~~flr~~yvvfD~~~~rIGfA~ 528 (530)
..++.||||++|||++|+|||++++|||||+
T Consensus 295 ~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 295 PAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred CCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 5567899999999999999999999999996
No 3
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=2.5e-62 Score=499.29 Aligned_cols=317 Identities=82% Similarity=1.416 Sum_probs=284.5
Q ss_pred EecccccCceEEEEEEEcCCCceEEEEEcCCCCCceeeCCCCCCCcCcCCCCccCCCCCCCceeCCcEEEEEecCceEEE
Q 009634 95 VALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAISG 174 (530)
Q Consensus 95 ~pl~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~Gs~~G 174 (530)
+||.|+.+.+|+++|+||||||+++|++||||+++||++..|.....|..++.|+|++|+||+..+..+.+.|++|++.|
T Consensus 1 ~~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G~~~G 80 (317)
T cd06098 1 VALKNYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYKSSKSSTYKKNGTSASIQYGTGSISG 80 (317)
T ss_pred CcccccCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCccccccCcCCcccCCCcccCCCEEEEEcCCceEEE
Confidence 58899999999999999999999999999999999999999964568999999999999999999999999999999999
Q ss_pred EEEEEEEEECCeEecceeEEEEEecccccccccccceeEecccCccccCCCCchHHHHHhCCCCCCCeEEEEecCCCCCC
Q 009634 175 FFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGE 254 (530)
Q Consensus 175 ~~~~Dtv~lg~~~~~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~ 254 (530)
.+++|+|++|+..++++.|+++....+..|....++||||||++..+.....|++++|++||+|++++||+||.+..+..
T Consensus 81 ~~~~D~v~ig~~~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~ 160 (317)
T cd06098 81 FFSQDSVTVGDLVVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVEQGLVKEPVFSFWLNRNPDEE 160 (317)
T ss_pred EEEeeEEEECCEEECCEEEEEEEecCCccccccccceeccccccchhhcCCCCHHHHHHhcCCCCCCEEEEEEecCCCCC
Confidence 99999999999999999999998776655666778999999999887777788999999999999999999998754334
Q ss_pred CCeEEEECcccCCCcccceEEEeccCCCceEEEEceEEECCeeeeecCCCceEEEeCCCCCccccHHHHHHHHHHhccCc
Q 009634 255 EGGEIVFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASG 334 (530)
Q Consensus 255 ~~G~L~fGg~D~~~~~g~l~~~p~~~~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDSGTt~i~lP~~~~~~l~~~i~~~~ 334 (530)
..|+|+|||+|+++|.|+++|+|+...++|.|.+++|+|+++.+..+.....++|||||+++++|++++++|.
T Consensus 161 ~~G~l~fGg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aivDTGTs~~~lP~~~~~~i~------- 233 (317)
T cd06098 161 EGGELVFGGVDPKHFKGEHTYVPVTRKGYWQFEMGDVLIGGKSTGFCAGGCAAIADSGTSLLAGPTTIVTQIN------- 233 (317)
T ss_pred CCcEEEECccChhhcccceEEEecCcCcEEEEEeCeEEECCEEeeecCCCcEEEEecCCcceeCCHHHHHhhh-------
Confidence 5799999999999999999999999889999999999999998776666788999999999999998765442
Q ss_pred ccccchhhHHhhhhhHHHHHHHhccCcccccccCcccccCCCccccccceeeeccCCCCCCCCCCCcccchhhHHHHHHH
Q 009634 335 VISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSACEMAVIWM 414 (530)
Q Consensus 335 ~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (530)
T Consensus 234 -------------------------------------------------------------------------------- 233 (317)
T cd06098 234 -------------------------------------------------------------------------------- 233 (317)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhccchhHHHhhhhhccccCCCCCCCCeeeeCCCCCCCCcEEEEECCEEEEeCcCcceeeecccccceEEeeEEecc
Q 009634 415 QNKLRRNETADQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFD 494 (530)
Q Consensus 415 ~~~~~~~~t~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~fgg~~~~l~p~~y~~~~~~~~~~~C~~~~~~~~ 494 (530)
+.++|+....+|+|+|+|+|++++|+|++|+++..++....|+++|++.+
T Consensus 234 ------------------------------~~~~C~~~~~~P~i~f~f~g~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~ 283 (317)
T cd06098 234 ------------------------------SAVDCNSLSSMPNVSFTIGGKTFELTPEQYILKVGEGAAAQCISGFTALD 283 (317)
T ss_pred ------------------------------ccCCccccccCCcEEEEECCEEEEEChHHeEEeecCCCCCEEeceEEECC
Confidence 23588877789999999999999999999999876555578999998877
Q ss_pred cCCCCCCeeeeCHHHhcceEEEEeCCCCeEEEEE
Q 009634 495 VAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAE 528 (530)
Q Consensus 495 ~~~~~~~~~ILG~~flr~~yvvfD~~~~rIGfA~ 528 (530)
.....++.||||++|||++|+|||++++|||||+
T Consensus 284 ~~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 284 VPPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred CCCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 5544567899999999999999999999999996
No 4
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=1.4e-61 Score=493.92 Aligned_cols=316 Identities=48% Similarity=0.926 Sum_probs=281.2
Q ss_pred EEEEEEEcCCCceEEEEEcCCCCCceeeCCCCCCCcCcCCCCccCCCCCCCceeCCcEEEEEecCceEEEEEEEEEEEEC
Q 009634 105 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAISGFFSQDNVKVG 184 (530)
Q Consensus 105 Y~~~i~iGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~Gs~~G~~~~Dtv~lg 184 (530)
|+++|+||||||+++|+|||||+++||++..|. ...|..++.|+|++|+||+..++.+.+.|++|++.|.+++|+|+++
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~-~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~g~~~G~~~~D~v~ig 79 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCT-SQACTKHNRFQPSESSTYVSNGEAFSIQYGTGSLTGIIGIDQVTVE 79 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCC-CcccCccceECCCCCcccccCCcEEEEEeCCcEEEEEeeecEEEEC
Confidence 899999999999999999999999999999996 4689989999999999999999999999999999999999999999
Q ss_pred CeEecceeEEEEEecccccccccccceeEecccCccccCCCCchHHHHHhCCCCCCCeEEEEecCCCCCCCCeEEEECcc
Q 009634 185 DLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGEEGGEIVFGGV 264 (530)
Q Consensus 185 ~~~~~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~~~G~L~fGg~ 264 (530)
+..++++.||++....+..|....++||||||++..+.....|++++|++||+|++++||+||.+.++....|+|+|||+
T Consensus 80 ~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~L~~~~~~~~~g~l~fGg~ 159 (316)
T cd05486 80 GITVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLVELPMFSVYMSRNPNSADGGELVFGGF 159 (316)
T ss_pred CEEEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHhcCCCCCCEEEEEEccCCCCCCCcEEEEccc
Confidence 99999999999877665445556789999999998887777889999999999999999999987544445799999999
Q ss_pred cCCCcccceEEEeccCCCceEEEEceEEECCeeeeecCCCceEEEeCCCCCccccHHHHHHHHHHhccCcccccchhhHH
Q 009634 265 DPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASGVISQECKTLV 344 (530)
Q Consensus 265 D~~~~~g~l~~~p~~~~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDSGTt~i~lP~~~~~~l~~~i~~~~~~~~~c~~~~ 344 (530)
|+++|.|++.|+|+.+.++|.|.+++|+|+++.+. .+....++|||||+++++|++++++|.+.+++.
T Consensus 160 d~~~~~g~l~~~pi~~~~~w~v~l~~i~v~g~~~~-~~~~~~aiiDTGTs~~~lP~~~~~~l~~~~~~~----------- 227 (316)
T cd05486 160 DTSRFSGQLNWVPVTVQGYWQIQLDNIQVGGTVIF-CSDGCQAIVDTGTSLITGPSGDIKQLQNYIGAT----------- 227 (316)
T ss_pred CHHHcccceEEEECCCceEEEEEeeEEEEecceEe-cCCCCEEEECCCcchhhcCHHHHHHHHHHhCCc-----------
Confidence 99999999999999999999999999999998764 345678999999999999999999998887543
Q ss_pred hhhhhHHHHHHHhccCcccccccCcccccCCCccccccceeeeccCCCCCCCCCCCcccchhhHHHHHHHHHHhhccchh
Q 009634 345 DQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSACEMAVIWMQNKLRRNETA 424 (530)
Q Consensus 345 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 424 (530)
T Consensus 228 -------------------------------------------------------------------------------- 227 (316)
T cd05486 228 -------------------------------------------------------------------------------- 227 (316)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhhhccccCCCCCCCCeeeeCCCCCCCCcEEEEECCEEEEeCcCcceeeecccccceEEeeEEecccCCCCCCeee
Q 009634 425 DQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWI 504 (530)
Q Consensus 425 ~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~fgg~~~~l~p~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~I 504 (530)
...+.|.++|+....+|+|+|+|+|++++|+|++|++.........|+++|+..+..+..++.||
T Consensus 228 ---------------~~~~~~~~~C~~~~~~p~i~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~I 292 (316)
T cd05486 228 ---------------ATDGEYGVDCSTLSLMPSVTFTINGIPYSLSPQAYTLEDQSDGGGYCSSGFQGLDIPPPAGPLWI 292 (316)
T ss_pred ---------------ccCCcEEEeccccccCCCEEEEECCEEEEeCHHHeEEecccCCCCEEeeEEEECCCCCCCCCeEE
Confidence 01356889999877899999999999999999999987533345689999988775544566899
Q ss_pred eCHHHhcceEEEEeCCCCeEEEEE
Q 009634 505 LGDVFMGRYHTVFDYGNLSIGFAE 528 (530)
Q Consensus 505 LG~~flr~~yvvfD~~~~rIGfA~ 528 (530)
||++|||++|+|||.+++|||||+
T Consensus 293 LGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 293 LGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred EchHHhcceEEEEeCCCCEeeccC
Confidence 999999999999999999999996
No 5
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=3.7e-61 Score=492.74 Aligned_cols=325 Identities=46% Similarity=0.892 Sum_probs=287.9
Q ss_pred cccccCceEEEEEEEcCCCceEEEEEcCCCCCceeeCCCCCC-CcCcCCCCccCCCCCCCceeCCcEEEEEecCceEEEE
Q 009634 97 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYF-SVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAISGF 175 (530)
Q Consensus 97 l~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~WV~~~~C~~-~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~Gs~~G~ 175 (530)
|.|+.|..|+++|+||||+|+++|++||||+++||++..|.. ...|..++.|+|++|+||+..++.+.+.|++|++.|.
T Consensus 1 ~~~~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~SsT~~~~~~~~~~~Yg~g~~~G~ 80 (326)
T cd05487 1 LTNYLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTACVTHNLYDASDSSTYKENGTEFTIHYASGTVKGF 80 (326)
T ss_pred CcccCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcchhhcccCcCCCCCCeeeeECCEEEEEEeCCceEEEE
Confidence 568889999999999999999999999999999999999963 2478889999999999999999999999999999999
Q ss_pred EEEEEEEECCeEecceeEEEEEecccccccccccceeEecccCccccCCCCchHHHHHhCCCCCCCeEEEEecCCCCCCC
Q 009634 176 FSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGEE 255 (530)
Q Consensus 176 ~~~Dtv~lg~~~~~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~~ 255 (530)
+++|+|++++..+. +.||++.......|....++||||||++..+..+..|++++|++||.|++++||+||.+.++...
T Consensus 81 ~~~D~v~~g~~~~~-~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FS~~L~~~~~~~~ 159 (326)
T cd05487 81 LSQDIVTVGGIPVT-QMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFDNIMSQGVLKEDVFSVYYSRDSSHSL 159 (326)
T ss_pred EeeeEEEECCEEee-EEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCC
Confidence 99999999998884 78999887654445556789999999988777677899999999999999999999987643345
Q ss_pred CeEEEECcccCCCcccceEEEeccCCCceEEEEceEEECCeeeeecCCCceEEEeCCCCCccccHHHHHHHHHHhccCcc
Q 009634 256 GGEIVFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASGV 335 (530)
Q Consensus 256 ~G~L~fGg~D~~~~~g~l~~~p~~~~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDSGTt~i~lP~~~~~~l~~~i~~~~~ 335 (530)
.|+|+|||+|+++|.|+++|+|+...++|+|.+++++|+++.+. +..+..++|||||+++++|+++++++++++++..
T Consensus 160 ~G~l~fGg~d~~~y~g~l~~~~~~~~~~w~v~l~~i~vg~~~~~-~~~~~~aiiDSGts~~~lP~~~~~~l~~~~~~~~- 237 (326)
T cd05487 160 GGEIVLGGSDPQHYQGDFHYINTSKTGFWQIQMKGVSVGSSTLL-CEDGCTAVVDTGASFISGPTSSISKLMEALGAKE- 237 (326)
T ss_pred CcEEEECCcChhhccCceEEEECCcCceEEEEecEEEECCEEEe-cCCCCEEEECCCccchhCcHHHHHHHHHHhCCcc-
Confidence 79999999999999999999999989999999999999998764 3456789999999999999999999999886540
Q ss_pred cccchhhHHhhhhhHHHHHHHhccCcccccccCcccccCCCccccccceeeeccCCCCCCCCCCCcccchhhHHHHHHHH
Q 009634 336 ISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSACEMAVIWMQ 415 (530)
Q Consensus 336 ~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (530)
T Consensus 238 -------------------------------------------------------------------------------- 237 (326)
T cd05487 238 -------------------------------------------------------------------------------- 237 (326)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhccchhHHHhhhhhccccCCCCCCCCeeeeCCCCCCCCcEEEEECCEEEEeCcCcceeeecccccceEEeeEEeccc
Q 009634 416 NKLRRNETADQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDV 495 (530)
Q Consensus 416 ~~~~~~~t~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~fgg~~~~l~p~~y~~~~~~~~~~~C~~~~~~~~~ 495 (530)
..+.|.+||+....+|+|+|+|+|.+++|++++|+++..+.....|+++|+..+.
T Consensus 238 -------------------------~~~~y~~~C~~~~~~P~i~f~fgg~~~~v~~~~yi~~~~~~~~~~C~~~~~~~~~ 292 (326)
T cd05487 238 -------------------------RLGDYVVKCNEVPTLPDISFHLGGKEYTLSSSDYVLQDSDFSDKLCTVAFHAMDI 292 (326)
T ss_pred -------------------------cCCCEEEeccccCCCCCEEEEECCEEEEeCHHHhEEeccCCCCCEEEEEEEeCCC
Confidence 1346889999888899999999999999999999998765556789999998775
Q ss_pred CCCCCCeeeeCHHHhcceEEEEeCCCCeEEEEEc
Q 009634 496 APPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEA 529 (530)
Q Consensus 496 ~~~~~~~~ILG~~flr~~yvvfD~~~~rIGfA~a 529 (530)
.++.++.||||++|||++|+|||++++|||||+|
T Consensus 293 ~~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 293 PPPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred CCCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 4445578999999999999999999999999986
No 6
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=1.6e-60 Score=488.30 Aligned_cols=327 Identities=55% Similarity=1.040 Sum_probs=289.9
Q ss_pred EecccccCceEEEEEEEcCCCceEEEEEcCCCCCceeeCCCCCC-CcCcCCCCccCCCCCCCceeCCcEEEEEecCceEE
Q 009634 95 VALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYF-SVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAIS 173 (530)
Q Consensus 95 ~pl~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~WV~~~~C~~-~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~Gs~~ 173 (530)
.||.|+.+..|+++|+||||+|++.|++||||+++||+|..|.. ...|..++.|+|++|+|++..++.+.+.|++|++.
T Consensus 2 ~~~~n~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~Sst~~~~~~~~~i~Y~~g~~~ 81 (329)
T cd05485 2 EPLSNYMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIACLLHNKYDSTKSSTYKKNGTEFAIQYGSGSLS 81 (329)
T ss_pred ccceeccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCccccCCCeECCcCCCCeEECCeEEEEEECCceEE
Confidence 37899999999999999999999999999999999999999963 23688888999999999999999999999999999
Q ss_pred EEEEEEEEEECCeEecceeEEEEEecccccccccccceeEecccCccccCCCCchHHHHHhCCCCCCCeEEEEecCCCCC
Q 009634 174 GFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEG 253 (530)
Q Consensus 174 G~~~~Dtv~lg~~~~~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~ 253 (530)
|.+++|++++++..++++.||++....+..|.....+||||||++..+.....|++.+|++||+|++++||+||.+.++.
T Consensus 82 G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~l~~~~~~ 161 (329)
T cd05485 82 GFLSTDTVSVGGVSVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVPVFYNMVNQKLVDAPVFSFYLNRDPSA 161 (329)
T ss_pred EEEecCcEEECCEEECCEEEEEEEecCCccccccccceEEEcCCccccccCCCCHHHHHHhCCCCCCCEEEEEecCCCCC
Confidence 99999999999999999999999876654455567899999999988776778899999999999999999999875443
Q ss_pred CCCeEEEECcccCCCcccceEEEeccCCCceEEEEceEEECCeeeeecCCCceEEEeCCCCCccccHHHHHHHHHHhccC
Q 009634 254 EEGGEIVFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 333 (530)
Q Consensus 254 ~~~G~L~fGg~D~~~~~g~l~~~p~~~~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDSGTt~i~lP~~~~~~l~~~i~~~ 333 (530)
...|+|+|||+|+++|.|+++|+|+.+.++|.|.++++.++++.+. .....++|||||+++++|++++++|.+++++.
T Consensus 162 ~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~~~~i~v~~~~~~--~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~ 239 (329)
T cd05485 162 KEGGELILGGSDPKHYTGNFTYLPVTRKGYWQFKMDSVSVGEGEFC--SGGCQAIADTGTSLIAGPVDEIEKLNNAIGAK 239 (329)
T ss_pred CCCcEEEEcccCHHHcccceEEEEcCCceEEEEEeeEEEECCeeec--CCCcEEEEccCCcceeCCHHHHHHHHHHhCCc
Confidence 4579999999999999999999999989999999999999998763 45678999999999999999999999888654
Q ss_pred cccccchhhHHhhhhhHHHHHHHhccCcccccccCcccccCCCccccccceeeeccCCCCCCCCCCCcccchhhHHHHHH
Q 009634 334 GVISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSACEMAVIW 413 (530)
Q Consensus 334 ~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (530)
.
T Consensus 240 ~------------------------------------------------------------------------------- 240 (329)
T cd05485 240 P------------------------------------------------------------------------------- 240 (329)
T ss_pred c-------------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHhhccchhHHHhhhhhccccCCCCCCCCeeeeCCCCCCCCcEEEEECCEEEEeCcCcceeeecccccceEEeeEEec
Q 009634 414 MQNKLRRNETADQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAF 493 (530)
Q Consensus 414 ~~~~~~~~~t~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~fgg~~~~l~p~~y~~~~~~~~~~~C~~~~~~~ 493 (530)
...+.|.++|+....+|+|+|+|+|+++.|+|++|+++........|+++|+..
T Consensus 241 --------------------------~~~~~~~~~C~~~~~~p~i~f~fgg~~~~i~~~~yi~~~~~~~~~~C~~~~~~~ 294 (329)
T cd05485 241 --------------------------IIGGEYMVNCSAIPSLPDITFVLGGKSFSLTGKDYVLKVTQMGQTICLSGFMGI 294 (329)
T ss_pred --------------------------ccCCcEEEeccccccCCcEEEEECCEEeEEChHHeEEEecCCCCCEEeeeEEEC
Confidence 013458899998778999999999999999999999987655557899999877
Q ss_pred ccCCCCCCeeeeCHHHhcceEEEEeCCCCeEEEEE
Q 009634 494 DVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAE 528 (530)
Q Consensus 494 ~~~~~~~~~~ILG~~flr~~yvvfD~~~~rIGfA~ 528 (530)
++++..++.||||++|||++|+|||++++|||||+
T Consensus 295 ~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 295 DIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred cCCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 65555567899999999999999999999999985
No 7
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=2.9e-60 Score=484.38 Aligned_cols=316 Identities=47% Similarity=0.864 Sum_probs=282.1
Q ss_pred ecccccCceEEEEEEEcCCCceEEEEEcCCCCCceeeCCCCCCCcCcCCCCccCCCCCCCceeCCcEEEEEecCceEEEE
Q 009634 96 ALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAISGF 175 (530)
Q Consensus 96 pl~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~Gs~~G~ 175 (530)
||+|+.+..|+++|+||||||++.|++||||+++||+|..|. ...|..++.|+|++|+||+..++.+.+.|++|++.|.
T Consensus 2 ~l~n~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~-~~~c~~~~~f~~~~Sst~~~~~~~~~~~yg~gs~~G~ 80 (317)
T cd05478 2 PLTNYLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCS-SQACSNHNRFNPRQSSTYQSTGQPLSIQYGTGSMTGI 80 (317)
T ss_pred ccccccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCC-cccccccCcCCCCCCcceeeCCcEEEEEECCceEEEE
Confidence 899999999999999999999999999999999999999996 4579889999999999999999999999999999999
Q ss_pred EEEEEEEECCeEecceeEEEEEecccccccccccceeEecccCccccCCCCchHHHHHhCCCCCCCeEEEEecCCCCCCC
Q 009634 176 FSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGEE 255 (530)
Q Consensus 176 ~~~Dtv~lg~~~~~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~~ 255 (530)
+++|+|++|+..++++.||++....+..+.....+||||||++..+..+..|++++|++||+|++++||+||.+... .
T Consensus 81 ~~~D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~~--~ 158 (317)
T cd05478 81 LGYDTVQVGGISDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVFDNMMSQGLVSQDLFSVYLSSNGQ--Q 158 (317)
T ss_pred EeeeEEEECCEEECCEEEEEEEecCccccccccccceeeeccchhcccCCCCHHHHHHhCCCCCCCEEEEEeCCCCC--C
Confidence 99999999999999999999987655333334579999999988877777889999999999999999999987632 3
Q ss_pred CeEEEECcccCCCcccceEEEeccCCCceEEEEceEEECCeeeeecCCCceEEEeCCCCCccccHHHHHHHHHHhccCcc
Q 009634 256 GGEIVFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASGV 335 (530)
Q Consensus 256 ~G~L~fGg~D~~~~~g~l~~~p~~~~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDSGTt~i~lP~~~~~~l~~~i~~~~~ 335 (530)
.|+|+|||+|+++|.|+++|+|+....+|.|.++++.|+++.+.. ..+..++|||||+++++|++++++|.+++++..
T Consensus 159 ~g~l~~Gg~d~~~~~g~l~~~p~~~~~~w~v~l~~v~v~g~~~~~-~~~~~~iiDTGts~~~lp~~~~~~l~~~~~~~~- 236 (317)
T cd05478 159 GSVVTFGGIDPSYYTGSLNWVPVTAETYWQITVDSVTINGQVVAC-SGGCQAIVDTGTSLLVGPSSDIANIQSDIGASQ- 236 (317)
T ss_pred CeEEEEcccCHHHccCceEEEECCCCcEEEEEeeEEEECCEEEcc-CCCCEEEECCCchhhhCCHHHHHHHHHHhCCcc-
Confidence 799999999999999999999999889999999999999998753 356789999999999999999999999886540
Q ss_pred cccchhhHHhhhhhHHHHHHHhccCcccccccCcccccCCCccccccceeeeccCCCCCCCCCCCcccchhhHHHHHHHH
Q 009634 336 ISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSACEMAVIWMQ 415 (530)
Q Consensus 336 ~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (530)
T Consensus 237 -------------------------------------------------------------------------------- 236 (317)
T cd05478 237 -------------------------------------------------------------------------------- 236 (317)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhccchhHHHhhhhhccccCCCCCCCCeeeeCCCCCCCCcEEEEECCEEEEeCcCcceeeecccccceEEeeEEeccc
Q 009634 416 NKLRRNETADQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDV 495 (530)
Q Consensus 416 ~~~~~~~t~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~fgg~~~~l~p~~y~~~~~~~~~~~C~~~~~~~~~ 495 (530)
...+.|.++|+....+|.|+|+|+|+++.|+|++|+.+. ...|+++|+..+
T Consensus 237 ------------------------~~~~~~~~~C~~~~~~P~~~f~f~g~~~~i~~~~y~~~~----~~~C~~~~~~~~- 287 (317)
T cd05478 237 ------------------------NQNGEMVVNCSSISSMPDVVFTINGVQYPLPPSAYILQD----QGSCTSGFQSMG- 287 (317)
T ss_pred ------------------------ccCCcEEeCCcCcccCCcEEEEECCEEEEECHHHheecC----CCEEeEEEEeCC-
Confidence 124568899998888999999999999999999999864 358999887543
Q ss_pred CCCCCCeeeeCHHHhcceEEEEeCCCCeEEEEE
Q 009634 496 APPRGPLWILGDVFMGRYHTVFDYGNLSIGFAE 528 (530)
Q Consensus 496 ~~~~~~~~ILG~~flr~~yvvfD~~~~rIGfA~ 528 (530)
..+.||||++|||++|+|||++++||||||
T Consensus 288 ---~~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 288 ---LGELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred ---CCCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 246899999999999999999999999996
No 8
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=6.8e-60 Score=482.14 Aligned_cols=320 Identities=49% Similarity=0.924 Sum_probs=285.0
Q ss_pred EecccccCceEEEEEEEcCCCceEEEEEcCCCCCceeeCCCCCCCcCcCCCCccCCCCCCCceeCCcEEEEEecCceEEE
Q 009634 95 VALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAISG 174 (530)
Q Consensus 95 ~pl~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~Gs~~G 174 (530)
+||.|+.+..|+++|+||||+|++.|++||||+++||+|..|. ...|..++.|++++|+||+..++.+.+.|++|+++|
T Consensus 1 ~~l~n~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~-~~~C~~~~~y~~~~Sst~~~~~~~~~~~y~~g~~~G 79 (320)
T cd05488 1 VPLTNYLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCG-SIACFLHSKYDSSASSTYKANGTEFKIQYGSGSLEG 79 (320)
T ss_pred CcccccCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCC-CcccCCcceECCCCCcceeeCCCEEEEEECCceEEE
Confidence 5899999999999999999999999999999999999999996 558988899999999999999999999999999999
Q ss_pred EEEEEEEEECCeEecceeEEEEEecccccccccccceeEecccCccccCCCCchHHHHHhCCCCCCCeEEEEecCCCCCC
Q 009634 175 FFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGE 254 (530)
Q Consensus 175 ~~~~Dtv~lg~~~~~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~ 254 (530)
.+++|++++++..++++.|+++....+..+....++||||||++..+.....|.+.+|++||.|++++||+||.+.. .
T Consensus 80 ~~~~D~v~ig~~~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~--~ 157 (320)
T cd05488 80 FVSQDTLSIGDLTIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPPFYNMINQGLLDEPVFSFYLGSSE--E 157 (320)
T ss_pred EEEEeEEEECCEEECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCCHHHHHHhcCCCCCCEEEEEecCCC--C
Confidence 99999999999999999999998766554555678999999999887766778889999999999999999998753 2
Q ss_pred CCeEEEECcccCCCcccceEEEeccCCCceEEEEceEEECCeeeeecCCCceEEEeCCCCCccccHHHHHHHHHHhccCc
Q 009634 255 EGGEIVFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASG 334 (530)
Q Consensus 255 ~~G~L~fGg~D~~~~~g~l~~~p~~~~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDSGTt~i~lP~~~~~~l~~~i~~~~ 334 (530)
..|.|+|||+|++++.|++.|+|+...++|.|.+++|+||++.+.. ....++|||||+++++|++++++|.+++++..
T Consensus 158 ~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~vg~~~~~~--~~~~~ivDSGtt~~~lp~~~~~~l~~~~~~~~ 235 (320)
T cd05488 158 DGGEATFGGIDESRFTGKITWLPVRRKAYWEVELEKIGLGDEELEL--ENTGAAIDTGTSLIALPSDLAEMLNAEIGAKK 235 (320)
T ss_pred CCcEEEECCcCHHHcCCceEEEeCCcCcEEEEEeCeEEECCEEecc--CCCeEEEcCCcccccCCHHHHHHHHHHhCCcc
Confidence 3799999999999999999999999889999999999999987753 45689999999999999999999998886440
Q ss_pred ccccchhhHHhhhhhHHHHHHHhccCcccccccCcccccCCCccccccceeeeccCCCCCCCCCCCcccchhhHHHHHHH
Q 009634 335 VISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSACEMAVIWM 414 (530)
Q Consensus 335 ~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (530)
T Consensus 236 -------------------------------------------------------------------------------- 235 (320)
T cd05488 236 -------------------------------------------------------------------------------- 235 (320)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhccchhHHHhhhhhccccCCCCCCCCeeeeCCCCCCCCcEEEEECCEEEEeCcCcceeeecccccceEEeeEEecc
Q 009634 415 QNKLRRNETADQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFD 494 (530)
Q Consensus 415 ~~~~~~~~t~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~fgg~~~~l~p~~y~~~~~~~~~~~C~~~~~~~~ 494 (530)
...+.|.++|+....+|+|+|+|+|+++.|+|++|+++.. +.|++.+...+
T Consensus 236 -------------------------~~~~~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~y~~~~~----g~C~~~~~~~~ 286 (320)
T cd05488 236 -------------------------SWNGQYTVDCSKVDSLPDLTFNFDGYNFTLGPFDYTLEVS----GSCISAFTGMD 286 (320)
T ss_pred -------------------------ccCCcEEeeccccccCCCEEEEECCEEEEECHHHheecCC----CeEEEEEEECc
Confidence 1245688999987789999999999999999999998532 47999998776
Q ss_pred cCCCCCCeeeeCHHHhcceEEEEeCCCCeEEEEE
Q 009634 495 VAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAE 528 (530)
Q Consensus 495 ~~~~~~~~~ILG~~flr~~yvvfD~~~~rIGfA~ 528 (530)
.+...++.||||++|||++|+|||++++|||||+
T Consensus 287 ~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 287 FPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred CCCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 5434456899999999999999999999999996
No 9
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=1.9e-59 Score=478.60 Aligned_cols=317 Identities=45% Similarity=0.901 Sum_probs=281.3
Q ss_pred CceEEEEEEEcCCCceEEEEEcCCCCCceeeCCCCCCCcCcCCCCccCCCCCCCceeCCcEEEEEecCceEEEEEEEEEE
Q 009634 102 DAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAISGFFSQDNV 181 (530)
Q Consensus 102 ~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~Gs~~G~~~~Dtv 181 (530)
|..|+++|+||||||++.|++||||+++||++..|. ...|..++.|+|++|+||+..++.+.+.|++|++.|.+++|++
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~-~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~Gs~~G~~~~D~i 79 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQ-SQACTNHTKFNPSQSSTYSTNGETFSLQYGSGSLTGIFGYDTV 79 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCC-CccccccCCCCcccCCCceECCcEEEEEECCcEEEEEEEeeEE
Confidence 468999999999999999999999999999999997 4589989999999999999999999999999999999999999
Q ss_pred EECCeEecceeEEEEEecccccccccccceeEecccCccccCCCCchHHHHHhCCCCCCCeEEEEecCCCCCCCCeEEEE
Q 009634 182 KVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGEEGGEIVF 261 (530)
Q Consensus 182 ~lg~~~~~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~~~G~L~f 261 (530)
++|+..++++.||++....+..+.....+||||||++..+.....+++++|+++|.|++++||+||.+.. ....|+|+|
T Consensus 80 ~~g~~~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~-~~~~g~l~f 158 (318)
T cd05477 80 TVQGIIITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQQNLLQAPIFSFYLSGQQ-GQQGGELVF 158 (318)
T ss_pred EECCEEEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHhcCCcCCCEEEEEEcCCC-CCCCCEEEE
Confidence 9999999999999999765544545567999999999887777788999999999999999999998752 223799999
Q ss_pred CcccCCCcccceEEEeccCCCceEEEEceEEECCeeeeecCCCceEEEeCCCCCccccHHHHHHHHHHhccCcccccchh
Q 009634 262 GGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASGVISQECK 341 (530)
Q Consensus 262 Gg~D~~~~~g~l~~~p~~~~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDSGTt~i~lP~~~~~~l~~~i~~~~~~~~~c~ 341 (530)
||+|++++.|++.|+|+...++|.|.++++.|+++.+..+.....++|||||+++++|++++++|++.+++..
T Consensus 159 Gg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~------- 231 (318)
T cd05477 159 GGVDNNLYTGQIYWTPVTSETYWQIGIQGFQINGQATGWCSQGCQAIVDTGTSLLTAPQQVMSTLMQSIGAQQ------- 231 (318)
T ss_pred cccCHHHcCCceEEEecCCceEEEEEeeEEEECCEEecccCCCceeeECCCCccEECCHHHHHHHHHHhCCcc-------
Confidence 9999999999999999998899999999999999987655566789999999999999999999999886540
Q ss_pred hHHhhhhhHHHHHHHhccCcccccccCcccccCCCccccccceeeeccCCCCCCCCCCCcccchhhHHHHHHHHHHhhcc
Q 009634 342 TLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSACEMAVIWMQNKLRRN 421 (530)
Q Consensus 342 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (530)
T Consensus 232 -------------------------------------------------------------------------------- 231 (318)
T cd05477 232 -------------------------------------------------------------------------------- 231 (318)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhHHHhhhhhccccCCCCCCCCeeeeCCCCCCCCcEEEEECCEEEEeCcCcceeeecccccceEEeeEEecccCCCCC-
Q 009634 422 ETADQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRG- 500 (530)
Q Consensus 422 ~t~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~fgg~~~~l~p~~y~~~~~~~~~~~C~~~~~~~~~~~~~~- 500 (530)
...+.|.++|+....+|+|+|+|+|+++.++|++|+.+. ...|+++|+....+...+
T Consensus 232 ------------------~~~~~~~~~C~~~~~~p~l~~~f~g~~~~v~~~~y~~~~----~~~C~~~i~~~~~~~~~~~ 289 (318)
T cd05477 232 ------------------DQYGQYVVNCNNIQNLPTLTFTINGVSFPLPPSAYILQN----NGYCTVGIEPTYLPSQNGQ 289 (318)
T ss_pred ------------------ccCCCEEEeCCccccCCcEEEEECCEEEEECHHHeEecC----CCeEEEEEEecccCCCCCC
Confidence 124568899998888999999999999999999999863 358998887654333223
Q ss_pred CeeeeCHHHhcceEEEEeCCCCeEEEEEc
Q 009634 501 PLWILGDVFMGRYHTVFDYGNLSIGFAEA 529 (530)
Q Consensus 501 ~~~ILG~~flr~~yvvfD~~~~rIGfA~a 529 (530)
+.||||++|||++|++||++++|||||+|
T Consensus 290 ~~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 290 PLWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred ceEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 57999999999999999999999999986
No 10
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=6.1e-59 Score=489.73 Aligned_cols=324 Identities=35% Similarity=0.665 Sum_probs=280.8
Q ss_pred CCcceEecccccCceEEEEEEEcCCCceEEEEEcCCCCCceeeCCCCCCCcCcCCCCccCCCCCCCceeCCcEEEEEecC
Q 009634 90 SDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGT 169 (530)
Q Consensus 90 ~~~~~~pl~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~ 169 (530)
+....+||.|+.+.+|+++|+||||||++.|++||||+++||+|..|. ...|..++.|+|++|+||+..++.+.+.|++
T Consensus 125 ~~~~~v~L~n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~-~~~C~~~~~yd~s~SsT~~~~~~~f~i~Yg~ 203 (453)
T PTZ00147 125 SEFDNVELKDLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCT-TEGCETKNLYDSSKSKTYEKDGTKVEMNYVS 203 (453)
T ss_pred CCCCeeeccccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCC-cccccCCCccCCccCcceEECCCEEEEEeCC
Confidence 466789999999999999999999999999999999999999999996 5689989999999999999999999999999
Q ss_pred ceEEEEEEEEEEEECCeEecceeEEEEEecccc--cccccccceeEecccCccccCCCCchHHHHHhCCCCCCCeEEEEe
Q 009634 170 GAISGFFSQDNVKVGDLVVKNQDFIEATKEASI--TFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWL 247 (530)
Q Consensus 170 Gs~~G~~~~Dtv~lg~~~~~~~~fg~~~~~~~~--~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l 247 (530)
|++.|.+++|+|++|+.+++ ..|+++....+. .+....++||||||++..+.....|++.+|++||.|++++||+||
T Consensus 204 GsvsG~~~~DtVtiG~~~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~~~p~~~~L~~qg~I~~~vFS~~L 282 (453)
T PTZ00147 204 GTVSGFFSKDLVTIGNLSVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSVDPYVVELKNQNKIEQAVFTFYL 282 (453)
T ss_pred CCEEEEEEEEEEEECCEEEE-EEEEEEEeccCcccccccccccceecccCCccccccCCCHHHHHHHcCCCCccEEEEEe
Confidence 99999999999999999988 568887765432 233457899999999988877788999999999999999999999
Q ss_pred cCCCCCCCCeEEEECcccCCCcccceEEEeccCCCceEEEEceEEECCeeeeecCCCceEEEeCCCCCccccHHHHHHHH
Q 009634 248 NRDIEGEEGGEIVFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQIN 327 (530)
Q Consensus 248 ~~~~~~~~~G~L~fGg~D~~~~~g~l~~~p~~~~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDSGTt~i~lP~~~~~~l~ 327 (530)
.+... ..|.|+|||+|+++|.|++.|+|+.+..+|.|.++ +.+++.. .....++|||||+++++|+++++++.
T Consensus 283 ~~~~~--~~G~L~fGGiD~~ky~G~l~y~pl~~~~~W~V~l~-~~vg~~~----~~~~~aIiDSGTsli~lP~~~~~ai~ 355 (453)
T PTZ00147 283 PPEDK--HKGYLTIGGIEERFYEGPLTYEKLNHDLYWQVDLD-VHFGNVS----SEKANVIVDSGTSVITVPTEFLNKFV 355 (453)
T ss_pred cCCCC--CCeEEEECCcChhhcCCceEEEEcCCCceEEEEEE-EEECCEe----cCceeEEECCCCchhcCCHHHHHHHH
Confidence 86432 37999999999999999999999998899999998 5777643 24678999999999999999999999
Q ss_pred HHhccCcccccchhhHHhhhhhHHHHHHHhccCcccccccCcccccCCCccccccceeeeccCCCCCCCCCCCcccchhh
Q 009634 328 HAIGASGVISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSAC 407 (530)
Q Consensus 328 ~~i~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (530)
+++++..
T Consensus 356 ~~l~~~~------------------------------------------------------------------------- 362 (453)
T PTZ00147 356 ESLDVFK------------------------------------------------------------------------- 362 (453)
T ss_pred HHhCCee-------------------------------------------------------------------------
Confidence 9886430
Q ss_pred HHHHHHHHHHhhccchhHHHhhhhhccccCCCCCCCCeeeeCCCCCCCCcEEEEECCEEEEeCcCcceeeecccccceEE
Q 009634 408 EMAVIWMQNKLRRNETADQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCI 487 (530)
Q Consensus 408 ~~~~~~~~~~~~~~~t~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~fgg~~~~l~p~~y~~~~~~~~~~~C~ 487 (530)
. ...+.|.++|+. ..+|+++|.|+|..++|+|++|+.+..+.....|+
T Consensus 363 ------------------------------~-~~~~~y~~~C~~-~~lP~~~f~f~g~~~~L~p~~yi~~~~~~~~~~C~ 410 (453)
T PTZ00147 363 ------------------------------V-PFLPLYVTTCNN-TKLPTLEFRSPNKVYTLEPEYYLQPIEDIGSALCM 410 (453)
T ss_pred ------------------------------c-CCCCeEEEeCCC-CCCCeEEEEECCEEEEECHHHheeccccCCCcEEE
Confidence 0 013457789986 57999999999999999999999865544456899
Q ss_pred eeEEecccCCCCCCeeeeCHHHhcceEEEEeCCCCeEEEEEcC
Q 009634 488 SGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEAA 530 (530)
Q Consensus 488 ~~~~~~~~~~~~~~~~ILG~~flr~~yvvfD~~~~rIGfA~a~ 530 (530)
++|++.+. ..+.||||++|||++|+|||++++|||||+|+
T Consensus 411 ~~i~~~~~---~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 411 LNIIPIDL---EKNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred EEEEECCC---CCCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 98887652 23579999999999999999999999999985
No 11
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=5.2e-58 Score=481.74 Aligned_cols=325 Identities=34% Similarity=0.668 Sum_probs=278.7
Q ss_pred CCCcceEecccccCceEEEEEEEcCCCceEEEEEcCCCCCceeeCCCCCCCcCcCCCCccCCCCCCCceeCCcEEEEEec
Q 009634 89 DSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYG 168 (530)
Q Consensus 89 ~~~~~~~pl~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg 168 (530)
.+....+||.|+.+.+|+++|+||||||++.|++||||+++||++..|. ...|..++.|+|++|+||+..++.+.+.|+
T Consensus 123 ~~~~~~~~l~d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~-~~~C~~~~~yd~s~SsT~~~~~~~~~i~YG 201 (450)
T PTZ00013 123 GSENDVIELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCD-SIGCSIKNLYDSSKSKSYEKDGTKVDITYG 201 (450)
T ss_pred ccCCCceeeeccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCC-ccccccCCCccCccCcccccCCcEEEEEEC
Confidence 3466789999999999999999999999999999999999999999996 568999999999999999999999999999
Q ss_pred CceEEEEEEEEEEEECCeEecceeEEEEEeccc--ccccccccceeEecccCccccCCCCchHHHHHhCCCCCCCeEEEE
Q 009634 169 TGAISGFFSQDNVKVGDLVVKNQDFIEATKEAS--ITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFW 246 (530)
Q Consensus 169 ~Gs~~G~~~~Dtv~lg~~~~~~~~fg~~~~~~~--~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~ 246 (530)
+|++.|.+++|+|++|+.+++ ..|+++..... ..+....++||||||++..+.....|++++|++||.|++++||+|
T Consensus 202 ~Gsv~G~~~~Dtv~iG~~~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~p~~~~L~~qg~I~~~vFS~~ 280 (450)
T PTZ00013 202 SGTVKGFFSKDLVTLGHLSMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFY 280 (450)
T ss_pred CceEEEEEEEEEEEECCEEEc-cEEEEEEeccccccceecccccceecccCCccccccCCCHHHHHHhccCcCCcEEEEE
Confidence 999999999999999999987 57777765432 123445689999999998877777899999999999999999999
Q ss_pred ecCCCCCCCCeEEEECcccCCCcccceEEEeccCCCceEEEEceEEECCeeeeecCCCceEEEeCCCCCccccHHHHHHH
Q 009634 247 LNRDIEGEEGGEIVFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQI 326 (530)
Q Consensus 247 l~~~~~~~~~G~L~fGg~D~~~~~g~l~~~p~~~~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDSGTt~i~lP~~~~~~l 326 (530)
|.+.+ ...|+|+|||+|+++|.|++.|+|+....+|.|.++ +.++.... ....+++||||+++++|+++++++
T Consensus 281 L~~~~--~~~G~L~fGGiD~~~y~G~L~y~pv~~~~yW~I~l~-v~~G~~~~----~~~~aIlDSGTSli~lP~~~~~~i 353 (450)
T PTZ00013 281 LPVHD--VHAGYLTIGGIEEKFYEGNITYEKLNHDLYWQIDLD-VHFGKQTM----QKANVIVDSGTTTITAPSEFLNKF 353 (450)
T ss_pred ecCCC--CCCCEEEECCcCccccccceEEEEcCcCceEEEEEE-EEECceec----cccceEECCCCccccCCHHHHHHH
Confidence 98643 237999999999999999999999998899999998 66665432 356799999999999999999999
Q ss_pred HHHhccCcccccchhhHHhhhhhHHHHHHHhccCcccccccCcccccCCCccccccceeeeccCCCCCCCCCCCcccchh
Q 009634 327 NHAIGASGVISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSA 406 (530)
Q Consensus 327 ~~~i~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (530)
.+++++..
T Consensus 354 ~~~l~~~~------------------------------------------------------------------------ 361 (450)
T PTZ00013 354 FANLNVIK------------------------------------------------------------------------ 361 (450)
T ss_pred HHHhCCee------------------------------------------------------------------------
Confidence 98876430
Q ss_pred hHHHHHHHHHHhhccchhHHHhhhhhccccCCCCCCCCeeeeCCCCCCCCcEEEEECCEEEEeCcCcceeeecccccceE
Q 009634 407 CEMAVIWMQNKLRRNETADQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQC 486 (530)
Q Consensus 407 ~~~~~~~~~~~~~~~~t~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~fgg~~~~l~p~~y~~~~~~~~~~~C 486 (530)
. ...+.|.++|+. ..+|+|+|+|+|.+++|+|++|+.+........|
T Consensus 362 -------------------------------~-~~~~~y~~~C~~-~~lP~i~F~~~g~~~~L~p~~Yi~~~~~~~~~~C 408 (450)
T PTZ00013 362 -------------------------------V-PFLPFYVTTCDN-KEMPTLEFKSANNTYTLEPEYYMNPLLDVDDTLC 408 (450)
T ss_pred -------------------------------c-CCCCeEEeecCC-CCCCeEEEEECCEEEEECHHHheehhccCCCCee
Confidence 0 013457889986 5789999999999999999999986443334689
Q ss_pred EeeEEecccCCCCCCeeeeCHHHhcceEEEEeCCCCeEEEEEcC
Q 009634 487 ISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEAA 530 (530)
Q Consensus 487 ~~~~~~~~~~~~~~~~~ILG~~flr~~yvvfD~~~~rIGfA~a~ 530 (530)
++++.+.+. .++.||||++|||++|+|||++++|||||+|+
T Consensus 409 ~~~i~~~~~---~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 409 MITMLPVDI---DDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred EEEEEECCC---CCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 998876542 33589999999999999999999999999985
No 12
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=3.7e-55 Score=446.23 Aligned_cols=316 Identities=39% Similarity=0.744 Sum_probs=280.6
Q ss_pred eEEEEEEEcCCCceEEEEEcCCCCCceeeCCCCCCCcCcCCCCccCCCCCCCceeCCcEEEEEecCceEEEEEEEEEEEE
Q 009634 104 QYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAISGFFSQDNVKV 183 (530)
Q Consensus 104 ~Y~~~i~iGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~Gs~~G~~~~Dtv~l 183 (530)
+|+++|+||||+|+++|++||||+++||++..|..+..|..+..|++.+|+|++..++.+.+.|++|+++|.+++|+|.+
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~~~~~~~~y~~~~S~t~~~~~~~~~~~y~~g~~~G~~~~D~v~i 80 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCSSCASSGFYNPSKSSTFSNQGKPFSISYGDGSVSGNLVSDTVSI 80 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHTHHCTSC-BBGGGSTTEEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccccccccccccccccccccccccceeeeeeeccCcccccccccceEee
Confidence 59999999999999999999999999999999973336788899999999999999999999999999999999999999
Q ss_pred CCeEecceeEEEEEecccccccccccceeEecccCccccCC-CCchHHHHHhCCCCCCCeEEEEecCCCCCCCCeEEEEC
Q 009634 184 GDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGK-AIPVWYNMLDQGLVKEPVFSFWLNRDIEGEEGGEIVFG 262 (530)
Q Consensus 184 g~~~~~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~-~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~~~G~L~fG 262 (530)
++..+.++.|+++....+..+....++||||||++..+... ..+++++|+++|+|++++||++|++.. ...|.|+||
T Consensus 81 g~~~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g~i~~~~fsl~l~~~~--~~~g~l~~G 158 (317)
T PF00026_consen 81 GGLTIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQGLISSNVFSLYLNPSD--SQNGSLTFG 158 (317)
T ss_dssp TTEEEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTTSSSSSEEEEEEESTT--SSEEEEEES
T ss_pred eeccccccceeccccccccccccccccccccccCCcccccccCCcceecchhhccccccccceeeeecc--cccchheee
Confidence 99999999999999876655667788999999988776654 788999999999999999999999875 347999999
Q ss_pred cccCCCcccceEEEeccCCCceEEEEceEEECCeeeeecCCCceEEEeCCCCCccccHHHHHHHHHHhccCcccccchhh
Q 009634 263 GVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASGVISQECKT 342 (530)
Q Consensus 263 g~D~~~~~g~l~~~p~~~~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDSGTt~i~lP~~~~~~l~~~i~~~~~~~~~c~~ 342 (530)
|+|+++|.|+++|+|+...++|.+.+++|.+++... .......++||||++++++|.+++++|++++++..
T Consensus 159 g~d~~~~~g~~~~~~~~~~~~w~v~~~~i~i~~~~~-~~~~~~~~~~Dtgt~~i~lp~~~~~~i~~~l~~~~-------- 229 (317)
T PF00026_consen 159 GYDPSKYDGDLVWVPLVSSGYWSVPLDSISIGGESV-FSSSGQQAILDTGTSYIYLPRSIFDAIIKALGGSY-------- 229 (317)
T ss_dssp SEEGGGEESEEEEEEBSSTTTTEEEEEEEEETTEEE-EEEEEEEEEEETTBSSEEEEHHHHHHHHHHHTTEE--------
T ss_pred ccccccccCceeccCccccccccccccccccccccc-ccccceeeecccccccccccchhhHHHHhhhcccc--------
Confidence 999999999999999999999999999999999932 23456789999999999999999999999997651
Q ss_pred HHhhhhhHHHHHHHhccCcccccccCcccccCCCccccccceeeeccCCCCCCCCCCCcccchhhHHHHHHHHHHhhccc
Q 009634 343 LVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSACEMAVIWMQNKLRRNE 422 (530)
Q Consensus 343 ~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (530)
T Consensus 230 -------------------------------------------------------------------------------- 229 (317)
T PF00026_consen 230 -------------------------------------------------------------------------------- 229 (317)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHhhhhhccccCCCCCCCCeeeeCCCCCCCCcEEEEECCEEEEeCcCcceeeecccccceEEeeEEecccCCCCCCe
Q 009634 423 TADQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPL 502 (530)
Q Consensus 423 t~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~fgg~~~~l~p~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~ 502 (530)
..+.|.++|+....+|.|+|+|++.+++|+|++|+.+........|+..|..++. ....+.
T Consensus 230 ------------------~~~~~~~~c~~~~~~p~l~f~~~~~~~~i~~~~~~~~~~~~~~~~C~~~i~~~~~-~~~~~~ 290 (317)
T PF00026_consen 230 ------------------SDGVYSVPCNSTDSLPDLTFTFGGVTFTIPPSDYIFKIEDGNGGYCYLGIQPMDS-SDDSDD 290 (317)
T ss_dssp ------------------ECSEEEEETTGGGGSEEEEEEETTEEEEEEHHHHEEEESSTTSSEEEESEEEESS-TTSSSE
T ss_pred ------------------cceeEEEecccccccceEEEeeCCEEEEecchHhcccccccccceeEeeeecccc-cccCCc
Confidence 0156889999887899999999999999999999999877655689999998664 445578
Q ss_pred eeeCHHHhcceEEEEeCCCCeEEEEEc
Q 009634 503 WILGDVFMGRYHTVFDYGNLSIGFAEA 529 (530)
Q Consensus 503 ~ILG~~flr~~yvvfD~~~~rIGfA~a 529 (530)
+|||.+|||++|++||++++|||||+|
T Consensus 291 ~iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 291 WILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp EEEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred eEecHHHhhceEEEEeCCCCEEEEecC
Confidence 999999999999999999999999997
No 13
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=2.1e-51 Score=411.44 Aligned_cols=219 Identities=36% Similarity=0.541 Sum_probs=192.2
Q ss_pred EEEEEEEcCCCceEEEEEcCCCCCceeeCCCCCCCcCcCCCCccCCCCCCCcee-CCcEEEEEecCce-EEEEEEEEEEE
Q 009634 105 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKR-NGTSAAIQYGTGA-ISGFFSQDNVK 182 (530)
Q Consensus 105 Y~~~i~iGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~-~~~~~~~~Yg~Gs-~~G~~~~Dtv~ 182 (530)
|+++|+||||||++.|++||||+++||++..|. ...|..+..|++++|+|+.. .++.+.+.|++|+ +.|.+++|+|+
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~-~~~~~~~~~y~~~~Sst~~~~~~~~~~i~Y~~G~~~~G~~~~D~v~ 79 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETP-AAQQGGHKLYDPSKSSTAKLLPGATWSISYGDGSSASGIVYTDTVS 79 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCC-chhhccCCcCCCccCccceecCCcEEEEEeCCCCeEEEEEEEEEEE
Confidence 789999999999999999999999999999996 33455677899999999986 5789999999997 89999999999
Q ss_pred ECCeEecceeEEEEEecccccccccccceeEecccCccccC---CCCchHHHHHhCCCCCCCeEEEEecCCCCCCCCeEE
Q 009634 183 VGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIG---KAIPVWYNMLDQGLVKEPVFSFWLNRDIEGEEGGEI 259 (530)
Q Consensus 183 lg~~~~~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~---~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~~~G~L 259 (530)
+++..++++.||+++...+..+....++||||||++..+.. ...+++++|.+++. +++||+||.+. ..|+|
T Consensus 80 ig~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~~--~~~Fs~~l~~~----~~G~l 153 (278)
T cd06097 80 IGGVEVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSLD--APLFTADLRKA----APGFY 153 (278)
T ss_pred ECCEEECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHHHHhcc--CceEEEEecCC----CCcEE
Confidence 99999999999999887654455567899999999876542 35678999999865 79999999863 27999
Q ss_pred EECcccCCCcccceEEEeccC-CCceEEEEceEEECCeeeeecCCCceEEEeCCCCCccccHHHHHHHHHHhc
Q 009634 260 VFGGVDPDHYKGEHTYVPVTK-KGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIG 331 (530)
Q Consensus 260 ~fGg~D~~~~~g~l~~~p~~~-~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDSGTt~i~lP~~~~~~l~~~i~ 331 (530)
+|||+|+++|.|+++|+|+.+ .++|.|++++|.|+++... ......++|||||+++++|++++++|.++++
T Consensus 154 ~fGg~D~~~~~g~l~~~pi~~~~~~w~v~l~~i~v~~~~~~-~~~~~~~iiDSGTs~~~lP~~~~~~l~~~l~ 225 (278)
T cd06097 154 TFGYIDESKYKGEISWTPVDNSSGFWQFTSTSYTVGGDAPW-SRSGFSAIADTGTTLILLPDAIVEAYYSQVP 225 (278)
T ss_pred EEeccChHHcCCceEEEEccCCCcEEEEEEeeEEECCccee-ecCCceEEeecCCchhcCCHHHHHHHHHhCc
Confidence 999999999999999999976 7899999999999998443 3457889999999999999999999999884
No 14
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=1.7e-50 Score=419.96 Aligned_cols=316 Identities=28% Similarity=0.469 Sum_probs=247.1
Q ss_pred ceEEEEEEEcCCCceEEEEEcCCCCCceeeCCCCCCCcCcCCCCccCCCCCCCceeCCcEEEEEecCceEEEEEEEEEEE
Q 009634 103 AQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAISGFFSQDNVK 182 (530)
Q Consensus 103 ~~Y~~~i~iGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~Gs~~G~~~~Dtv~ 182 (530)
..|+++|+||||+|+|.|+|||||+++||+|..| |..++.|+|++|+||+..++.+.+.|++|++.|.+++|+|+
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~-----~~~~~~f~~~~SsT~~~~~~~~~i~Yg~Gs~~G~~~~D~v~ 76 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPH-----PFIHTYFHRELSSTYRDLGKGVTVPYTQGSWEGELGTDLVS 76 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcCCC-----ccccccCCchhCcCcccCCceEEEEECcceEEEEEEEEEEE
Confidence 4799999999999999999999999999999877 33467899999999999999999999999999999999999
Q ss_pred ECCeEeccee----EEEEEecccccccccccceeEecccCcccc--CCCCchHHHHHhCCCCCCCeEEEEecCCC-----
Q 009634 183 VGDLVVKNQD----FIEATKEASITFLAAKFDGILGLGFQEISI--GKAIPVWYNMLDQGLVKEPVFSFWLNRDI----- 251 (530)
Q Consensus 183 lg~~~~~~~~----fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~--~~~~~~~~~L~~qg~i~~~~FSl~l~~~~----- 251 (530)
+++. .++. |+++....+..+....++||||||++.++. ....|++++|++|+.+ +++||+||+...
T Consensus 77 ig~~--~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q~~~-~~~FS~~l~~~~~~~~~ 153 (364)
T cd05473 77 IPKG--PNVTFRANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVKQTGI-PDVFSLQMCGAGLPVNG 153 (364)
T ss_pred ECCC--CccceEEeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHHHHhccCC-ccceEEEeccccccccc
Confidence 9863 2333 344443332212223679999999998764 2457899999999997 579999986421
Q ss_pred --CCCCCeEEEECcccCCCcccceEEEeccCCCceEEEEceEEECCeeeeecCC---CceEEEeCCCCCccccHHHHHHH
Q 009634 252 --EGEEGGEIVFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCST---GCNAIADSGTSLLAGPTTIITQI 326 (530)
Q Consensus 252 --~~~~~G~L~fGg~D~~~~~g~l~~~p~~~~~~w~v~l~~i~v~g~~~~~~~~---~~~aiiDSGTt~i~lP~~~~~~l 326 (530)
.....|.|+|||+|+++|.|++.|+|+.+..+|.|.+++|.|+++.+..... ...++|||||+++++|++++++|
T Consensus 154 ~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~~~~~~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTs~~~lp~~~~~~l 233 (364)
T cd05473 154 SASGTVGGSMVIGGIDPSLYKGDIWYTPIREEWYYEVIILKLEVGGQSLNLDCKEYNYDKAIVDSGTTNLRLPVKVFNAA 233 (364)
T ss_pred ccccCCCcEEEeCCcCHhhcCCCceEEecCcceeEEEEEEEEEECCEecccccccccCccEEEeCCCcceeCCHHHHHHH
Confidence 1224799999999999999999999999889999999999999988764321 24699999999999999999999
Q ss_pred HHHhccCcccccchhhHHhhhhhHHHHHHHhccCcccccccCcccccCCCccccccceeeeccCCCCCCCCCCCcccchh
Q 009634 327 NHAIGASGVISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSA 406 (530)
Q Consensus 327 ~~~i~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (530)
.++++++...
T Consensus 234 ~~~l~~~~~~---------------------------------------------------------------------- 243 (364)
T cd05473 234 VDAIKAASLI---------------------------------------------------------------------- 243 (364)
T ss_pred HHHHHhhccc----------------------------------------------------------------------
Confidence 9998765100
Q ss_pred hHHHHHHHHHHhhccchhHHHhhhhhccccCCCCC-CCCeeeeCCCCC-----CCCcEEEEECC------EEEEeCcCcc
Q 009634 407 CEMAVIWMQNKLRRNETADQILNYVNQLCDRLPSP-NGESAVDCDNLS-----SMPNVSFTIGG------KVFDLAPNEY 474 (530)
Q Consensus 407 ~~~~~~~~~~~~~~~~t~~~~~~~~~~~c~~~~~~-~~~~~~~C~~~~-----~~P~i~f~fgg------~~~~l~p~~y 474 (530)
. ..+.. .+.+.++|.... .+|+|+|+|+| .++.|+|++|
T Consensus 244 --------------------------~---~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g~~~~~~~~l~l~p~~Y 294 (364)
T cd05473 244 --------------------------E---DFPDGFWLGSQLACWQKGTTPWEIFPKISIYLRDENSSQSFRITILPQLY 294 (364)
T ss_pred --------------------------c---cCCccccCcceeecccccCchHhhCCcEEEEEccCCCCceEEEEECHHHh
Confidence 0 00000 122346786533 58999999964 4789999999
Q ss_pred eeeecc-cccceEEeeEEecccCCCCCCeeeeCHHHhcceEEEEeCCCCeEEEEEcC
Q 009634 475 VLEVGE-GVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEAA 530 (530)
Q Consensus 475 ~~~~~~-~~~~~C~~~~~~~~~~~~~~~~~ILG~~flr~~yvvfD~~~~rIGfA~a~ 530 (530)
+..... +....|+. +. .. ...+.||||+.|||++|+|||++++|||||+++
T Consensus 295 ~~~~~~~~~~~~C~~-~~-~~---~~~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~ 346 (364)
T cd05473 295 LRPVEDHGTQLDCYK-FA-IS---QSTNGTVIGAVIMEGFYVVFDRANKRVGFAVST 346 (364)
T ss_pred hhhhccCCCcceeeE-Ee-ee---cCCCceEEeeeeEcceEEEEECCCCEEeeEecc
Confidence 986432 22457984 21 11 123579999999999999999999999999874
No 15
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-50 Score=421.38 Aligned_cols=320 Identities=43% Similarity=0.803 Sum_probs=265.3
Q ss_pred ceEecccccCceEEEEEEEcCCCceEEEEEcCCCCCceeeCCCCCCCcCcCC-CCc-cCCCCCCCceeCCcE--------
Q 009634 93 DIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYF-HSK-YKSSHSSTYKRNGTS-------- 162 (530)
Q Consensus 93 ~~~pl~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~-~~~-f~~~~SsT~~~~~~~-------- 162 (530)
...++..+.+++|+++|+||||||+|.|++||||+++||+|..|.. .|.. +.. |+|++|+||+..+|.
T Consensus 35 ~~~~~~~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~--~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~ 112 (398)
T KOG1339|consen 35 LPESLSSYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSS--ACYSQHNPIFDPSASSTYKSVGCSSPRCKSLP 112 (398)
T ss_pred cccccccccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccc--cccccCCCccCccccccccccCCCCccccccc
Confidence 3456777778899999999999999999999999999999999952 7874 455 999999999997743
Q ss_pred ----------EEEEecCc-eEEEEEEEEEEEECC---eEecceeEEEEEecccccccc-cccceeEecccCccccCCCCc
Q 009634 163 ----------AAIQYGTG-AISGFFSQDNVKVGD---LVVKNQDFIEATKEASITFLA-AKFDGILGLGFQEISIGKAIP 227 (530)
Q Consensus 163 ----------~~~~Yg~G-s~~G~~~~Dtv~lg~---~~~~~~~fg~~~~~~~~~~~~-~~~~GIlGLg~~~~s~~~~~~ 227 (530)
|.+.|++| +++|.+++|+|++++ ...+++.|||+....+. +.. .+++||||||+...+...+.+
T Consensus 113 ~~~~~~~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~~~~~~~~~FGc~~~~~g~-~~~~~~~dGIlGLg~~~~S~~~q~~ 191 (398)
T KOG1339|consen 113 QSCSPNSSCPYSIQYGDGSSTSGYLATDTVTFGGTTSLPVPNQTFGCGTNNPGS-FGLFAAFDGILGLGRGSLSVPSQLP 191 (398)
T ss_pred cCcccCCcCceEEEeCCCCceeEEEEEEEEEEccccccccccEEEEeeecCccc-cccccccceEeecCCCCccceeecc
Confidence 99999995 599999999999998 77888999999988765 444 678999999999988655544
Q ss_pred hHHHHHhCCCCCCCeEEEEecCCCCC-CCCeEEEECcccCCCcccceEEEeccCCC--ceEEEEceEEECCee----eee
Q 009634 228 VWYNMLDQGLVKEPVFSFWLNRDIEG-EEGGEIVFGGVDPDHYKGEHTYVPVTKKG--YWQFEMGDVLIDGET----TGY 300 (530)
Q Consensus 228 ~~~~L~~qg~i~~~~FSl~l~~~~~~-~~~G~L~fGg~D~~~~~g~l~~~p~~~~~--~w~v~l~~i~v~g~~----~~~ 300 (530)
.+.++. ++||+||.+.... ...|.|+||++|+.++.+++.|+|+.... +|.+.+.+|.|+++. ..+
T Consensus 192 ~~~~~~-------~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~~~y~v~l~~I~vgg~~~~~~~~~ 264 (398)
T KOG1339|consen 192 SFYNAI-------NVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPSTYYQVNLDGISVGGKRPIGSSLF 264 (398)
T ss_pred cccCCc-------eeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCCccEEEEEeEEEECCccCCCcceE
Confidence 332221 3899999987533 24899999999999999999999998877 999999999999843 223
Q ss_pred cCCCceEEEeCCCCCccccHHHHHHHHHHhccCcccccchhhHHhhhhhHHHHHHHhccCcccccccCcccccCCCcccc
Q 009634 301 CSTGCNAIADSGTSLLAGPTTIITQINHAIGASGVISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFS 380 (530)
Q Consensus 301 ~~~~~~aiiDSGTt~i~lP~~~~~~l~~~i~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (530)
+.+..++++||||++++||.++|++|.+++++..
T Consensus 265 ~~~~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~---------------------------------------------- 298 (398)
T KOG1339|consen 265 CTDGGGAIIDSGTSLTYLPTSAYNALREAIGAEV---------------------------------------------- 298 (398)
T ss_pred ecCCCCEEEECCcceeeccHHHHHHHHHHHHhhe----------------------------------------------
Confidence 3346889999999999999999999999997650
Q ss_pred ccceeeeccCCCCCCCCCCCcccchhhHHHHHHHHHHhhccchhHHHhhhhhccccCCCCCCCCeeeeCCCCCC----CC
Q 009634 381 MGIESVIDKSSDKSSDGVHDSAMCSACEMAVIWMQNKLRRNETADQILNYVNQLCDRLPSPNGESAVDCDNLSS----MP 456 (530)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~----~P 456 (530)
......+.+.++|..... +|
T Consensus 299 --------------------------------------------------------~~~~~~~~~~~~C~~~~~~~~~~P 322 (398)
T KOG1339|consen 299 --------------------------------------------------------SVVGTDGEYFVPCFSISTSGVKLP 322 (398)
T ss_pred --------------------------------------------------------eccccCCceeeecccCCCCcccCC
Confidence 001234567788887766 99
Q ss_pred cEEEEEC-CEEEEeCcCcceeeecccccceEEeeEEecccCCCCCCeeeeCHHHhcceEEEEeCC-CCeEEEEEc
Q 009634 457 NVSFTIG-GKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYG-NLSIGFAEA 529 (530)
Q Consensus 457 ~i~f~fg-g~~~~l~p~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILG~~flr~~yvvfD~~-~~rIGfA~a 529 (530)
.|+|+|+ |+.|.+++++|+++....... |++.+...+.. +.||||+.|+|+++++||.. ++|||||++
T Consensus 323 ~i~~~f~~g~~~~l~~~~y~~~~~~~~~~-Cl~~~~~~~~~----~~~ilG~~~~~~~~~~~D~~~~~riGfa~~ 392 (398)
T KOG1339|consen 323 DITFHFGGGAVFSLPPKNYLVEVSDGGGV-CLAFFNGMDSG----PLWILGDVFQQNYLVVFDLGENSRVGFAPA 392 (398)
T ss_pred cEEEEECCCcEEEeCccceEEEECCCCCc-eeeEEecCCCC----ceEEEchHHhCCEEEEEeCCCCCEEEeccc
Confidence 9999998 899999999999987755222 99888755421 68999999999999999999 999999985
No 16
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=1e-49 Score=420.69 Aligned_cols=305 Identities=22% Similarity=0.375 Sum_probs=237.2
Q ss_pred cCceEEEEEEEcCCCceEEEEEcCCCCCceeeCCCCCCCcCcC--CCCccCCCCCCCceeCC------------------
Q 009634 101 MDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCY--FHSKYKSSHSSTYKRNG------------------ 160 (530)
Q Consensus 101 ~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~--~~~~f~~~~SsT~~~~~------------------ 160 (530)
.+++|+++|+||||||++.|++||||+++||+|.+|. .|. .++.|||++|+||+...
T Consensus 81 ~~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~---~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~~~ 157 (431)
T PLN03146 81 NGGEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCD---DCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCSDE 157 (431)
T ss_pred CCccEEEEEEcCCCCceEEEEECCCCCcceEcCCCCc---ccccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCCCC
Confidence 4679999999999999999999999999999999996 676 45799999999998642
Q ss_pred --cEEEEEecCce-EEEEEEEEEEEECC-----eEecceeEEEEEecccccccccccceeEecccCccccCCCCchHHHH
Q 009634 161 --TSAAIQYGTGA-ISGFFSQDNVKVGD-----LVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNM 232 (530)
Q Consensus 161 --~~~~~~Yg~Gs-~~G~~~~Dtv~lg~-----~~~~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L 232 (530)
|.|.+.|++|+ +.|.+++|+|+|++ ..++++.|||+....+. |. ...+||||||+...+ ++.||
T Consensus 158 ~~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~-f~-~~~~GilGLG~~~~S------l~sql 229 (431)
T PLN03146 158 NTCTYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGT-FD-EKGSGIVGLGGGPLS------LISQL 229 (431)
T ss_pred CCCeeEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCC-cc-CCCceeEecCCCCcc------HHHHh
Confidence 78999999998 68999999999997 46889999999876552 32 257999999998766 45565
Q ss_pred HhCCCCCCCeEEEEecCCC-CCCCCeEEEECcccCCCccc-ceEEEeccC---CCceEEEEceEEECCeeeeecC-----
Q 009634 233 LDQGLVKEPVFSFWLNRDI-EGEEGGEIVFGGVDPDHYKG-EHTYVPVTK---KGYWQFEMGDVLIDGETTGYCS----- 302 (530)
Q Consensus 233 ~~qg~i~~~~FSl~l~~~~-~~~~~G~L~fGg~D~~~~~g-~l~~~p~~~---~~~w~v~l~~i~v~g~~~~~~~----- 302 (530)
..+ +. ++||+||.+.. +....|.|+||+. .++.| .+.|+|+.. ..+|.|.+++|+||++.+.+..
T Consensus 230 ~~~--~~-~~FSycL~~~~~~~~~~g~l~fG~~--~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~ 304 (431)
T PLN03146 230 GSS--IG-GKFSYCLVPLSSDSNGTSKINFGTN--AIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNG 304 (431)
T ss_pred hHh--hC-CcEEEECCCCCCCCCCcceEEeCCc--cccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCcccccc
Confidence 442 44 59999997532 2234799999984 45544 488999963 4799999999999999876432
Q ss_pred -CCceEEEeCCCCCccccHHHHHHHHHHhccCcccccchhhHHhhhhhHHHHHHHhccCcccccccCcccccCCCccccc
Q 009634 303 -TGCNAIADSGTSLLAGPTTIITQINHAIGASGVISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSM 381 (530)
Q Consensus 303 -~~~~aiiDSGTt~i~lP~~~~~~l~~~i~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (530)
+...+||||||++++||+++|++|.+++.+. +....
T Consensus 305 ~~~g~~iiDSGTt~t~Lp~~~y~~l~~~~~~~----------------------~~~~~--------------------- 341 (431)
T PLN03146 305 VEEGNIIIDSGTTLTLLPSDFYSELESAVEEA----------------------IGGER--------------------- 341 (431)
T ss_pred CCCCcEEEeCCccceecCHHHHHHHHHHHHHH----------------------hcccc---------------------
Confidence 2347999999999999999999998887543 00000
Q ss_pred cceeeeccCCCCCCCCCCCcccchhhHHHHHHHHHHhhccchhHHHhhhhhccccCCCCCCCCeeeeCCCC---CCCCcE
Q 009634 382 GIESVIDKSSDKSSDGVHDSAMCSACEMAVIWMQNKLRRNETADQILNYVNQLCDRLPSPNGESAVDCDNL---SSMPNV 458 (530)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~c~~~~~~~~~~~~~C~~~---~~~P~i 458 (530)
+ . +......+|... ..+|+|
T Consensus 342 ----~----------------------------------------------------~-~~~~~~~~C~~~~~~~~~P~i 364 (431)
T PLN03146 342 ----V----------------------------------------------------S-DPQGLLSLCYSSTSDIKLPII 364 (431)
T ss_pred ----C----------------------------------------------------C-CCCCCCCccccCCCCCCCCeE
Confidence 0 0 000011234321 368999
Q ss_pred EEEECCEEEEeCcCcceeeecccccceEEeeEEecccCCCCCCeeeeCHHHhcceEEEEeCCCCeEEEEEcC
Q 009634 459 SFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEAA 530 (530)
Q Consensus 459 ~f~fgg~~~~l~p~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILG~~flr~~yvvfD~~~~rIGfA~a~ 530 (530)
+|+|+|+++.|+|++|+++..++ ..|+..+. ..+.||||+.|||++|++||++++|||||++.
T Consensus 365 ~~~F~Ga~~~l~~~~~~~~~~~~--~~Cl~~~~-------~~~~~IlG~~~q~~~~vvyDl~~~~igFa~~~ 427 (431)
T PLN03146 365 TAHFTGADVKLQPLNTFVKVSED--LVCFAMIP-------TSSIAIFGNLAQMNFLVGYDLESKTVSFKPTD 427 (431)
T ss_pred EEEECCCeeecCcceeEEEcCCC--cEEEEEec-------CCCceEECeeeEeeEEEEEECCCCEEeeecCC
Confidence 99999999999999999976543 57985332 12469999999999999999999999999863
No 17
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=1.3e-49 Score=407.19 Aligned_cols=283 Identities=29% Similarity=0.458 Sum_probs=235.7
Q ss_pred ceEEEEEEEcCCCceEEEEEcCCCCCceeeCCCCCCCcCcC--CCCccCCCCCCCceeC----------------CcEEE
Q 009634 103 AQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCY--FHSKYKSSHSSTYKRN----------------GTSAA 164 (530)
Q Consensus 103 ~~Y~~~i~iGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~--~~~~f~~~~SsT~~~~----------------~~~~~ 164 (530)
+.|+++|+||||||++.|+|||||+++||+|..|. .|. .++.|+|++|+|++.. .|.+.
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~---~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~~~~~~~~~~~~~ 78 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCK---NCGIHMEPPYNLNNSITSSILYCDCNKCCYCLSCLNNKCEYS 78 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCC---CcCCCCCCCcCcccccccccccCCCccccccCcCCCCcCcEE
Confidence 47999999999999999999999999999999996 464 4578999999999863 57899
Q ss_pred EEecCce-EEEEEEEEEEEECCeEec-------ceeEEEEEecccccccccccceeEecccCccccCCCCchHHHHHhCC
Q 009634 165 IQYGTGA-ISGFFSQDNVKVGDLVVK-------NQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQG 236 (530)
Q Consensus 165 ~~Yg~Gs-~~G~~~~Dtv~lg~~~~~-------~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg 236 (530)
+.|++|+ +.|.+++|+|+|++..+. ++.|||+....+ .|.....+||||||+...+. ..+....|++++
T Consensus 79 i~Y~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~-~~~~~~~~GilGLg~~~~~~--~~~~~~~l~~~~ 155 (326)
T cd06096 79 ISYSEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETN-LFLTQQATGILGLSLTKNNG--LPTPIILLFTKR 155 (326)
T ss_pred EEECCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccC-cccccccceEEEccCCcccc--cCchhHHHHHhc
Confidence 9999997 899999999999986553 467999887654 24455789999999986542 223444577777
Q ss_pred CCCC--CeEEEEecCCCCCCCCeEEEECcccCCCcc----------cceEEEeccCCCceEEEEceEEECCee-eeecCC
Q 009634 237 LVKE--PVFSFWLNRDIEGEEGGEIVFGGVDPDHYK----------GEHTYVPVTKKGYWQFEMGDVLIDGET-TGYCST 303 (530)
Q Consensus 237 ~i~~--~~FSl~l~~~~~~~~~G~L~fGg~D~~~~~----------g~l~~~p~~~~~~w~v~l~~i~v~g~~-~~~~~~ 303 (530)
.+.. ++||+||++. .|.|+|||+|++++. +++.|+|+..+.+|.|.+++|+++++. ......
T Consensus 156 ~~~~~~~~FS~~l~~~-----~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~~~~y~v~l~~i~vg~~~~~~~~~~ 230 (326)
T cd06096 156 PKLKKDKIFSICLSED-----GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITRKYYYYVKLEGLSVYGTTSNSGNTK 230 (326)
T ss_pred ccccCCceEEEEEcCC-----CeEEEECccChhhhcccccccccccCCceEEeccCCceEEEEEEEEEEcccccceeccc
Confidence 7664 9999999864 799999999999987 899999999889999999999999886 112345
Q ss_pred CceEEEeCCCCCccccHHHHHHHHHHhccCcccccchhhHHhhhhhHHHHHHHhccCcccccccCcccccCCCccccccc
Q 009634 304 GCNAIADSGTSLLAGPTTIITQINHAIGASGVISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGI 383 (530)
Q Consensus 304 ~~~aiiDSGTt~i~lP~~~~~~l~~~i~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (530)
...++|||||++++||++++++|.++
T Consensus 231 ~~~aivDSGTs~~~lp~~~~~~l~~~------------------------------------------------------ 256 (326)
T cd06096 231 GLGMLVDSGSTLSHFPEDLYNKINNF------------------------------------------------------ 256 (326)
T ss_pred CCCEEEeCCCCcccCCHHHHHHHHhh------------------------------------------------------
Confidence 77899999999999999999887532
Q ss_pred eeeeccCCCCCCCCCCCcccchhhHHHHHHHHHHhhccchhHHHhhhhhccccCCCCCCCCeeeeCCCCCCCCcEEEEEC
Q 009634 384 ESVIDKSSDKSSDGVHDSAMCSACEMAVIWMQNKLRRNETADQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIG 463 (530)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~fg 463 (530)
+|+|+|.|+
T Consensus 257 -----------------------------------------------------------------------~P~i~~~f~ 265 (326)
T cd06096 257 -----------------------------------------------------------------------FPTITIIFE 265 (326)
T ss_pred -----------------------------------------------------------------------cCcEEEEEc
Confidence 289999997
Q ss_pred -CEEEEeCcCcceeeecccccceEEeeEEecccCCCCCCeeeeCHHHhcceEEEEeCCCCeEEEEEcC
Q 009634 464 -GKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEAA 530 (530)
Q Consensus 464 -g~~~~l~p~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILG~~flr~~yvvfD~~~~rIGfA~a~ 530 (530)
|+++.++|++|+++.... .|..++.. ..+.||||++|||++|+|||++++|||||++.
T Consensus 266 ~g~~~~i~p~~y~~~~~~~---~c~~~~~~------~~~~~ILG~~flr~~y~vFD~~~~riGfa~~~ 324 (326)
T cd06096 266 NNLKIDWKPSSYLYKKESF---WCKGGEKS------VSNKPILGASFFKNKQIIFDLDNNRIGFVESN 324 (326)
T ss_pred CCcEEEECHHHhccccCCc---eEEEEEec------CCCceEEChHHhcCcEEEEECcCCEEeeEcCC
Confidence 899999999999975433 46655542 23579999999999999999999999999873
No 18
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=1.1e-48 Score=395.13 Aligned_cols=278 Identities=33% Similarity=0.551 Sum_probs=240.0
Q ss_pred eEEEEEEEcCCCceEEEEEcCCCCCceeeCCCCCCCcCcCCCCccCCCCCCCceeCCcEEEEEecCc-eEEEEEEEEEEE
Q 009634 104 QYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTG-AISGFFSQDNVK 182 (530)
Q Consensus 104 ~Y~~~i~iGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~G-s~~G~~~~Dtv~ 182 (530)
.|+++|+||||+|++.|++||||+++||+ .+.+.|++| ++.|.+++|+|+
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~-----------------------------~~~~~Y~~g~~~~G~~~~D~v~ 52 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP-----------------------------DFSISYGDGTSASGTWGTDTVS 52 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee-----------------------------eeEEEeccCCcEEEEEEEEEEE
Confidence 69999999999999999999999999996 678899996 599999999999
Q ss_pred ECCeEecceeEEEEEecccccccccccceeEecccCcccc-----CCCCchHHHHHhCCCCCCCeEEEEecCCCCCCCCe
Q 009634 183 VGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISI-----GKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGEEGG 257 (530)
Q Consensus 183 lg~~~~~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~-----~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~~~G 257 (530)
+++..++++.||+++.. ...+||||||++..+. ...++++++|.+||.|++++||+||.+.+ ...|
T Consensus 53 ~g~~~~~~~~fg~~~~~-------~~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~~g~i~~~~Fsl~l~~~~--~~~g 123 (295)
T cd05474 53 IGGATVKNLQFAVANST-------SSDVGVLGIGLPGNEATYGTGYTYPNFPIALKKQGLIKKNAYSLYLNDLD--ASTG 123 (295)
T ss_pred ECCeEecceEEEEEecC-------CCCcceeeECCCCCcccccCCCcCCCHHHHHHHCCcccceEEEEEeCCCC--CCce
Confidence 99999999999999873 2358999999988743 23457999999999999999999998753 2379
Q ss_pred EEEECcccCCCcccceEEEeccCC------CceEEEEceEEECCeeee--ecCCCceEEEeCCCCCccccHHHHHHHHHH
Q 009634 258 EIVFGGVDPDHYKGEHTYVPVTKK------GYWQFEMGDVLIDGETTG--YCSTGCNAIADSGTSLLAGPTTIITQINHA 329 (530)
Q Consensus 258 ~L~fGg~D~~~~~g~l~~~p~~~~------~~w~v~l~~i~v~g~~~~--~~~~~~~aiiDSGTt~i~lP~~~~~~l~~~ 329 (530)
.|+|||+|++++.|++.|+|+... .+|.|.+++|++++.... .......++|||||+++++|.+++++|.++
T Consensus 124 ~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~iiDSGt~~~~lP~~~~~~l~~~ 203 (295)
T cd05474 124 SILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLLSKNLPALLDSGTTLTYLPSDIVDAIAKQ 203 (295)
T ss_pred eEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccccCCCccEEECCCCccEeCCHHHHHHHHHH
Confidence 999999999999999999999765 789999999999998753 234567899999999999999999999999
Q ss_pred hccCcccccchhhHHhhhhhHHHHHHHhccCcccccccCcccccCCCccccccceeeeccCCCCCCCCCCCcccchhhHH
Q 009634 330 IGASGVISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSACEM 409 (530)
Q Consensus 330 i~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (530)
+++..
T Consensus 204 ~~~~~--------------------------------------------------------------------------- 208 (295)
T cd05474 204 LGATY--------------------------------------------------------------------------- 208 (295)
T ss_pred hCCEE---------------------------------------------------------------------------
Confidence 87651
Q ss_pred HHHHHHHHhhccchhHHHhhhhhccccCCCCCCCCeeeeCCCCCCCCcEEEEECCEEEEeCcCcceeeecc--cccceEE
Q 009634 410 AVIWMQNKLRRNETADQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGE--GVAAQCI 487 (530)
Q Consensus 410 ~~~~~~~~~~~~~t~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~fgg~~~~l~p~~y~~~~~~--~~~~~C~ 487 (530)
....+.|.++|+.... |+|+|+|+|.++.||+++|+++... .....|+
T Consensus 209 -----------------------------~~~~~~~~~~C~~~~~-p~i~f~f~g~~~~i~~~~~~~~~~~~~~~~~~C~ 258 (295)
T cd05474 209 -----------------------------DSDEGLYVVDCDAKDD-GSLTFNFGGATISVPLSDLVLPASTDDGGDGACY 258 (295)
T ss_pred -----------------------------cCCCcEEEEeCCCCCC-CEEEEEECCeEEEEEHHHhEeccccCCCCCCCeE
Confidence 0013568899997666 9999999999999999999997642 3357899
Q ss_pred eeEEecccCCCCCCeeeeCHHHhcceEEEEeCCCCeEEEEEc
Q 009634 488 SGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEA 529 (530)
Q Consensus 488 ~~~~~~~~~~~~~~~~ILG~~flr~~yvvfD~~~~rIGfA~a 529 (530)
..|+..+ .+.||||++|||++|++||.+++|||||+|
T Consensus 259 ~~i~~~~-----~~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 259 LGIQPST-----SDYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred EEEEeCC-----CCcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 8887543 158999999999999999999999999997
No 19
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=3.6e-48 Score=392.16 Aligned_cols=288 Identities=25% Similarity=0.404 Sum_probs=223.9
Q ss_pred eEEEEEEEcCCCceEEEEEcCCCCCceeeCCCCCCCcCcCCCCccCCCCCCCceeCCcEEEEEecCce-EEEEEEEEEEE
Q 009634 104 QYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGA-ISGFFSQDNVK 182 (530)
Q Consensus 104 ~Y~~~i~iGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~Gs-~~G~~~~Dtv~ 182 (530)
+|+++|.||||||++.|++||||+++||+|.+| |.|.+.|++|+ ++|.+++|+|+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c------------------------~~~~i~Yg~Gs~~~G~~~~D~v~ 56 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC------------------------CLYQVSYGDGSYTTGDLATDTLT 56 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC------------------------CeeeeEeCCCceEEEEEEEEEEE
Confidence 599999999999999999999999999976544 67999999998 58999999999
Q ss_pred ECCe-EecceeEEEEEecccccccccccceeEecccCccccCCCCchHHHHHhCCCCCCCeEEEEecCCCCCCCCeEEEE
Q 009634 183 VGDL-VVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGEEGGEIVF 261 (530)
Q Consensus 183 lg~~-~~~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~~~G~L~f 261 (530)
|++. .++++.|||+....+. + ...+||||||++..+ +..++..+ .+++||+||.+.. ....|+|+|
T Consensus 57 ig~~~~~~~~~Fg~~~~~~~~-~--~~~~GilGLg~~~~s------~~~ql~~~---~~~~FS~~L~~~~-~~~~G~l~f 123 (299)
T cd05472 57 LGSSDVVPGFAFGCGHDNEGL-F--GGAAGLLGLGRGKLS------LPSQTASS---YGGVFSYCLPDRS-SSSSGYLSF 123 (299)
T ss_pred eCCCCccCCEEEECCccCCCc-c--CCCCEEEECCCCcch------HHHHhhHh---hcCceEEEccCCC-CCCCceEEe
Confidence 9998 8999999999876542 2 267999999987665 34455443 2589999998743 133799999
Q ss_pred CcccCCCcccceEEEeccCC----CceEEEEceEEECCeeeeec---CCCceEEEeCCCCCccccHHHHHHHHHHhccCc
Q 009634 262 GGVDPDHYKGEHTYVPVTKK----GYWQFEMGDVLIDGETTGYC---STGCNAIADSGTSLLAGPTTIITQINHAIGASG 334 (530)
Q Consensus 262 Gg~D~~~~~g~l~~~p~~~~----~~w~v~l~~i~v~g~~~~~~---~~~~~aiiDSGTt~i~lP~~~~~~l~~~i~~~~ 334 (530)
||+|++ .|++.|+|+... .+|.|++++|+|+++.+... .....++|||||+++++|++++++|.+++.+..
T Consensus 124 Gg~d~~--~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~~~~~~l~~~l~~~~ 201 (299)
T cd05472 124 GAAASV--PAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPSAYAALRDAFRAAM 201 (299)
T ss_pred CCcccc--CCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCHHHHHHHHHHHHHHh
Confidence 999998 899999999753 68999999999999987642 235689999999999999999999999986540
Q ss_pred ccccchhhHHhhhhhHHHHHHHhccCcccccccCcccccCCCccccccceeeeccCCCCCCCCCCCcccchhhHHHHHHH
Q 009634 335 VISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSACEMAVIWM 414 (530)
Q Consensus 335 ~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (530)
. .... . .+
T Consensus 202 ~----------------------~~~~----------------------------~-----~~----------------- 209 (299)
T cd05472 202 A----------------------AYPR----------------------------A-----PG----------------- 209 (299)
T ss_pred c----------------------cCCC----------------------------C-----CC-----------------
Confidence 0 0000 0 00
Q ss_pred HHHhhccchhHHHhhhhhccccCCCCCCCCeeeeCCCCCCCCcEEEEEC-CEEEEeCcCcceeeecccccceEEeeEEec
Q 009634 415 QNKLRRNETADQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIG-GKVFDLAPNEYVLEVGEGVAAQCISGFTAF 493 (530)
Q Consensus 415 ~~~~~~~~t~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~fg-g~~~~l~p~~y~~~~~~~~~~~C~~~~~~~ 493 (530)
...-+.|+.. +|.....+|+|+|+|+ |+++.|+|++|+++.. .....|+ ++...
T Consensus 210 --------------~~~~~~C~~~---------~~~~~~~~P~i~f~f~~g~~~~l~~~~y~~~~~-~~~~~C~-~~~~~ 264 (299)
T cd05472 210 --------------FSILDTCYDL---------SGFRSVSVPTVSLHFQGGADVELDASGVLYPVD-DSSQVCL-AFAGT 264 (299)
T ss_pred --------------CCCCCccCcC---------CCCcCCccCCEEEEECCCCEEEeCcccEEEEec-CCCCEEE-EEeCC
Confidence 0000123322 2233357999999997 8999999999998432 2346897 45432
Q ss_pred ccCCCCCCeeeeCHHHhcceEEEEeCCCCeEEEEEcC
Q 009634 494 DVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEAA 530 (530)
Q Consensus 494 ~~~~~~~~~~ILG~~flr~~yvvfD~~~~rIGfA~a~ 530 (530)
+ ..++.||||+.|||++|+|||++++|||||++.
T Consensus 265 ~---~~~~~~ilG~~fl~~~~vvfD~~~~~igfa~~~ 298 (299)
T cd05472 265 S---DDGGLSIIGNVQQQTFRVVYDVAGGRIGFAPGG 298 (299)
T ss_pred C---CCCCCEEEchHHccceEEEEECCCCEEeEecCC
Confidence 2 234579999999999999999999999999863
No 20
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=6.3e-46 Score=371.85 Aligned_cols=227 Identities=48% Similarity=0.868 Sum_probs=199.6
Q ss_pred EEEEEEEcCCCceEEEEEcCCCCCceeeCCCCCCCcCcCCCCc--cCCCCCCCceeCCcEEEEEecCceEEEEEEEEEEE
Q 009634 105 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSK--YKSSHSSTYKRNGTSAAIQYGTGAISGFFSQDNVK 182 (530)
Q Consensus 105 Y~~~i~iGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~--f~~~~SsT~~~~~~~~~~~Yg~Gs~~G~~~~Dtv~ 182 (530)
|+++|.||+|+|++.|++||||+++||+|..|. ...|..... |++..|+++....+.+.+.|++|++.|.+++|+|+
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~Y~~g~~~g~~~~D~v~ 79 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCT-SCSCQKHPRFKYDSSKSSTYKDTGCTFSITYGDGSVTGGLGTDTVT 79 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCC-ccccccCCCCccCccCCceeecCCCEEEEEECCCeEEEEEEEeEEE
Confidence 789999999999999999999999999999996 223333333 89999999999999999999999999999999999
Q ss_pred ECCeEecceeEEEEEecccccccccccceeEecccCccccCCCCchHHHHHhCCCCCCCeEEEEecCCCCCCCCeEEEEC
Q 009634 183 VGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGEEGGEIVFG 262 (530)
Q Consensus 183 lg~~~~~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~~~G~L~fG 262 (530)
+++..++++.||++..... .+....++||||||+...+.....+++++|.+++.|.+++||+||.+.......|.|+||
T Consensus 80 ~~~~~~~~~~fg~~~~~~~-~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~i~~~~Fs~~l~~~~~~~~~g~l~~G 158 (283)
T cd05471 80 IGGLTIPNQTFGCATSESG-DFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLISSPVFSFYLGRDGDGGNGGELTFG 158 (283)
T ss_pred ECCEEEeceEEEEEeccCC-cccccccceEeecCCcccccccCCCHHHHHHHCCCCCCCEEEEEEcCCCCCCCCCEEEEc
Confidence 9999999999999998764 344567899999999987766678899999999999999999999885322348999999
Q ss_pred cccCCCcccceEEEeccC--CCceEEEEceEEECCeeeeecCCCceEEEeCCCCCccccHHHHHHHHHHhccC
Q 009634 263 GVDPDHYKGEHTYVPVTK--KGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 333 (530)
Q Consensus 263 g~D~~~~~g~l~~~p~~~--~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDSGTt~i~lP~~~~~~l~~~i~~~ 333 (530)
|+|++++.+++.|+|+.. ..+|.|.+++|.+++...........++|||||+++++|.+++++|++++.+.
T Consensus 159 g~d~~~~~~~~~~~p~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~lp~~~~~~l~~~~~~~ 231 (283)
T cd05471 159 GIDPSKYTGDLTYTPVVSNGPGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYLPSSVYDAILKALGAA 231 (283)
T ss_pred ccCccccCCceEEEecCCCCCCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeCCHHHHHHHHHHhCCc
Confidence 999999999999999987 78999999999999974222456789999999999999999999999999766
No 21
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=2.3e-45 Score=365.19 Aligned_cols=248 Identities=28% Similarity=0.476 Sum_probs=210.7
Q ss_pred eEEEEEEEcCCCceEEEEEcCCCCCceeeCCCCCCCcCcCCCCccCCCCCCCceeCCcEEEEEecCce-EEEEEEEEEEE
Q 009634 104 QYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGA-ISGFFSQDNVK 182 (530)
Q Consensus 104 ~Y~~~i~iGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~Gs-~~G~~~~Dtv~ 182 (530)
+|+++|+||||||++.|+|||||+++||+| |.+.++|++|+ ++|.+++|+|+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~---------------------------~~~~~~Y~dg~~~~G~~~~D~v~ 53 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC---------------------------CSYEYSYGDGSSTSGVLATETFT 53 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC---------------------------CceEeEeCCCceeeeeEEEEEEE
Confidence 599999999999999999999999999974 45788999775 89999999999
Q ss_pred ECCe--EecceeEEEEEecccccccccccceeEecccCccccCCCCchHHHHHhCCCCCCCeEEEEecCCCCCCCCeEEE
Q 009634 183 VGDL--VVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGEEGGEIV 260 (530)
Q Consensus 183 lg~~--~~~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~~~G~L~ 260 (530)
+++. .++++.||++....+ +....++||||||++..+ +..+|..++ ++||+||.+..+....|+|+
T Consensus 54 ~g~~~~~~~~~~Fg~~~~~~~--~~~~~~~GIlGLg~~~~s------~~~ql~~~~----~~Fs~~l~~~~~~~~~G~l~ 121 (265)
T cd05476 54 FGDSSVSVPNVAFGCGTDNEG--GSFGGADGILGLGRGPLS------LVSQLGSTG----NKFSYCLVPHDDTGGSSPLI 121 (265)
T ss_pred ecCCCCccCCEEEEecccccC--CccCCCCEEEECCCCccc------HHHHhhccc----CeeEEEccCCCCCCCCCeEE
Confidence 9998 889999999998765 456678999999987654 667787776 79999998753234589999
Q ss_pred ECcccCCCcccceEEEeccC----CCceEEEEceEEECCeeeee--------cCCCceEEEeCCCCCccccHHHHHHHHH
Q 009634 261 FGGVDPDHYKGEHTYVPVTK----KGYWQFEMGDVLIDGETTGY--------CSTGCNAIADSGTSLLAGPTTIITQINH 328 (530)
Q Consensus 261 fGg~D~~~~~g~l~~~p~~~----~~~w~v~l~~i~v~g~~~~~--------~~~~~~aiiDSGTt~i~lP~~~~~~l~~ 328 (530)
|||+|++ +.|++.|+|+.. .++|.+++++|+|+++.+.+ ......++|||||+++++|+++
T Consensus 122 fGg~d~~-~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~~~lp~~~------ 194 (265)
T cd05476 122 LGDAADL-GGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTYLPDPA------ 194 (265)
T ss_pred ECCcccc-cCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcceEcCccc------
Confidence 9999999 999999999975 57999999999999998752 2456789999999999999641
Q ss_pred HhccCcccccchhhHHhhhhhHHHHHHHhccCcccccccCcccccCCCccccccceeeeccCCCCCCCCCCCcccchhhH
Q 009634 329 AIGASGVISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSACE 408 (530)
Q Consensus 329 ~i~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (530)
T Consensus 195 -------------------------------------------------------------------------------- 194 (265)
T cd05476 195 -------------------------------------------------------------------------------- 194 (265)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhhccchhHHHhhhhhccccCCCCCCCCeeeeCCCCCCCCcEEEEEC-CEEEEeCcCcceeeecccccceEE
Q 009634 409 MAVIWMQNKLRRNETADQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIG-GKVFDLAPNEYVLEVGEGVAAQCI 487 (530)
Q Consensus 409 ~~~~~~~~~~~~~~t~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~fg-g~~~~l~p~~y~~~~~~~~~~~C~ 487 (530)
+|+|+|+|+ +.++.+++++|+++.. ....|+
T Consensus 195 ----------------------------------------------~P~i~~~f~~~~~~~i~~~~y~~~~~--~~~~C~ 226 (265)
T cd05476 195 ----------------------------------------------YPDLTLHFDGGADLELPPENYFVDVG--EGVVCL 226 (265)
T ss_pred ----------------------------------------------cCCEEEEECCCCEEEeCcccEEEECC--CCCEEE
Confidence 278999998 8999999999999643 346898
Q ss_pred eeEEecccCCCCCCeeeeCHHHhcceEEEEeCCCCeEEEEEcC
Q 009634 488 SGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEAA 530 (530)
Q Consensus 488 ~~~~~~~~~~~~~~~~ILG~~flr~~yvvfD~~~~rIGfA~a~ 530 (530)
. +... ...+.||||++|||++|++||.+++|||||++.
T Consensus 227 ~-~~~~----~~~~~~ilG~~fl~~~~~vFD~~~~~iGfa~~~ 264 (265)
T cd05476 227 A-ILSS----SSGGVSILGNIQQQNFLVEYDLENSRLGFAPAD 264 (265)
T ss_pred E-EecC----CCCCcEEEChhhcccEEEEEECCCCEEeeecCC
Confidence 5 4322 245689999999999999999999999999873
No 22
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=4e-45 Score=364.89 Aligned_cols=258 Identities=22% Similarity=0.415 Sum_probs=213.1
Q ss_pred ceEEEEEEEcCCCceEEEEEcCCCCCceeeCC-CCCCCcCcCCCCccCCCCCCCceeCCcEEEEEecCc-eEEEEEEEEE
Q 009634 103 AQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSA-KCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTG-AISGFFSQDN 180 (530)
Q Consensus 103 ~~Y~~~i~iGtP~Q~~~v~lDTGSs~~WV~~~-~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~G-s~~G~~~~Dt 180 (530)
++|+++|+||||||++.|++||||+++||+|. .|. .| .|.|.++|++| +++|.+++|+
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~---~c-----------------~c~~~i~Ygd~~~~~G~~~~D~ 60 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCT---GC-----------------QCDYEIEYADGGSSMGVLVTDI 60 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCC---CC-----------------cCccEeEeCCCCceEEEEEEEE
Confidence 47999999999999999999999999999984 564 45 46799999965 5899999999
Q ss_pred EEECC----eEecceeEEEEEeccccc-ccccccceeEecccCccccCCCCchHHHHHhCCCCCCCeEEEEecCCCCCCC
Q 009634 181 VKVGD----LVVKNQDFIEATKEASIT-FLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGEE 255 (530)
Q Consensus 181 v~lg~----~~~~~~~fg~~~~~~~~~-~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~~ 255 (530)
|+++. ..++++.|||+....+.. +.....+||||||+...+ ++++|.+++.| +++||+||.+..
T Consensus 61 v~~~~~~~~~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s------~~~ql~~~~~i-~~~Fs~~l~~~~---- 129 (273)
T cd05475 61 FSLKLTNGSRAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKIS------LPSQLASQGII-KNVIGHCLSSNG---- 129 (273)
T ss_pred EEEeecCCCcccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCC------HHHHHHhcCCc-CceEEEEccCCC----
Confidence 99953 567899999997654421 234568999999987654 78899999999 899999997632
Q ss_pred CeEEEECcccCCCcccceEEEeccCC---CceEEEEceEEECCeeeeecCCCceEEEeCCCCCccccHHHHHHHHHHhcc
Q 009634 256 GGEIVFGGVDPDHYKGEHTYVPVTKK---GYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGA 332 (530)
Q Consensus 256 ~G~L~fGg~D~~~~~g~l~~~p~~~~---~~w~v~l~~i~v~g~~~~~~~~~~~aiiDSGTt~i~lP~~~~~~l~~~i~~ 332 (530)
.|.|+|| |..++.|++.|+|+.++ .+|.|++.+|+||++... .....++|||||+++++|+++|
T Consensus 130 ~g~l~~G--~~~~~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~--~~~~~~ivDTGTt~t~lp~~~y--------- 196 (273)
T cd05475 130 GGFLFFG--DDLVPSSGVTWTPMRRESQKKHYSPGPASLLFNGQPTG--GKGLEVVFDSGSSYTYFNAQAY--------- 196 (273)
T ss_pred CeEEEEC--CCCCCCCCeeecccccCCCCCeEEEeEeEEEECCEECc--CCCceEEEECCCceEEcCCccc---------
Confidence 6899998 45667899999999764 799999999999998543 4567899999999999997522
Q ss_pred CcccccchhhHHhhhhhHHHHHHHhccCcccccccCcccccCCCccccccceeeeccCCCCCCCCCCCcccchhhHHHHH
Q 009634 333 SGVISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSACEMAVI 412 (530)
Q Consensus 333 ~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (530)
T Consensus 197 -------------------------------------------------------------------------------- 196 (273)
T cd05475 197 -------------------------------------------------------------------------------- 196 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhccchhHHHhhhhhccccCCCCCCCCeeeeCCCCCCCCcEEEEECC----EEEEeCcCcceeeecccccceEEe
Q 009634 413 WMQNKLRRNETADQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGG----KVFDLAPNEYVLEVGEGVAAQCIS 488 (530)
Q Consensus 413 ~~~~~~~~~~t~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~fgg----~~~~l~p~~y~~~~~~~~~~~C~~ 488 (530)
+|+|+|+|++ ++++|+|++|++.... ...|+.
T Consensus 197 ------------------------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~~~--~~~Cl~ 232 (273)
T cd05475 197 ------------------------------------------FKPLTLKFGKGWRTRLLEIPPENYLIISEK--GNVCLG 232 (273)
T ss_pred ------------------------------------------cccEEEEECCCCceeEEEeCCCceEEEcCC--CCEEEE
Confidence 5789999976 7999999999987543 357987
Q ss_pred eEEecccCCCCCCeeeeCHHHhcceEEEEeCCCCeEEEEEcC
Q 009634 489 GFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEAA 530 (530)
Q Consensus 489 ~~~~~~~~~~~~~~~ILG~~flr~~yvvfD~~~~rIGfA~a~ 530 (530)
.+...+. ..++.||||+.|||++|++||++++|||||++.
T Consensus 233 ~~~~~~~--~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~ 272 (273)
T cd05475 233 ILNGSEI--GLGNTNIIGDISMQGLMVIYDNEKQQIGWVRSD 272 (273)
T ss_pred EecCCCc--CCCceEEECceEEEeeEEEEECcCCEeCcccCC
Confidence 7654321 234689999999999999999999999999874
No 23
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=1.2e-41 Score=351.55 Aligned_cols=313 Identities=17% Similarity=0.240 Sum_probs=230.9
Q ss_pred EcCCCce-EEEEEcCCCCCceeeCCC----------CCCCcCcCCCCccCCCC------CCCceeCCcEEEEE-ecCce-
Q 009634 111 IGTPSQT-FTVIFDTGSSNLWVPSAK----------CYFSVSCYFHSKYKSSH------SSTYKRNGTSAAIQ-YGTGA- 171 (530)
Q Consensus 111 iGtP~Q~-~~v~lDTGSs~~WV~~~~----------C~~~~~C~~~~~f~~~~------SsT~~~~~~~~~~~-Yg~Gs- 171 (530)
+|||-.+ +.|++||||+++||+|.+ |. +..|..+..|++.. ++......|.|... |++|+
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~~~sst~~~~~C~-s~~C~~~~~~~~~~~~~~~~~~~c~~~~C~y~~~~y~~gs~ 80 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDAGHSSTYQTVPCS-SSVCSLANRYHCPGTCGGAPGPGCGNNTCTAHPYNPVTGEC 80 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCCCCcCCCCccCcC-ChhhccccccCCCccccCCCCCCCCCCcCeeEccccccCcE
Confidence 5788777 999999999999997764 44 56777666676542 22333344767554 77885
Q ss_pred EEEEEEEEEEEECC--------eEecceeEEEEEecccccccccccceeEecccCccccCCCCchHHHHHhCCCCCCCeE
Q 009634 172 ISGFFSQDNVKVGD--------LVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVF 243 (530)
Q Consensus 172 ~~G~~~~Dtv~lg~--------~~~~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~F 243 (530)
..|.+++|+++|+. ..++++.|||+.......+ ...++||||||++.++ +..||..++. .+++|
T Consensus 81 t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~-~~~~dGIlGLg~~~lS------l~sql~~~~~-~~~~F 152 (362)
T cd05489 81 ATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGL-PPGAQGVAGLGRSPLS------LPAQLASAFG-VARKF 152 (362)
T ss_pred eeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCC-ccccccccccCCCccc------hHHHhhhhcC-CCcce
Confidence 78999999999973 3688999999976432112 3347999999999887 4556666554 46899
Q ss_pred EEEecCCCCCCCCeEEEECcccCCCcc------cceEEEeccCC----CceEEEEceEEECCeeeeec--------CCCc
Q 009634 244 SFWLNRDIEGEEGGEIVFGGVDPDHYK------GEHTYVPVTKK----GYWQFEMGDVLIDGETTGYC--------STGC 305 (530)
Q Consensus 244 Sl~l~~~~~~~~~G~L~fGg~D~~~~~------g~l~~~p~~~~----~~w~v~l~~i~v~g~~~~~~--------~~~~ 305 (530)
|+||.+.. ...|.|+||+.+..++. +++.|+|+..+ .+|.|++++|+||++.+.+. .+..
T Consensus 153 S~CL~~~~--~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~~~~~~ 230 (362)
T cd05489 153 ALCLPSSP--GGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSANDRLGPG 230 (362)
T ss_pred EEEeCCCC--CCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhccccccCCC
Confidence 99998753 23799999999988774 78999999753 79999999999999987642 2346
Q ss_pred eEEEeCCCCCccccHHHHHHHHHHhccCcccccchhhHHhhhhhHHHHHHHhccCcccccccCcccccCCCcccccccee
Q 009634 306 NAIADSGTSLLAGPTTIITQINHAIGASGVISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIES 385 (530)
Q Consensus 306 ~aiiDSGTt~i~lP~~~~~~l~~~i~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (530)
.++|||||++++||+++|++|.+++.+.- ..++ ...+
T Consensus 231 g~iiDSGTs~t~lp~~~y~~l~~a~~~~~----------~~~~---------~~~~------------------------ 267 (362)
T cd05489 231 GVKLSTVVPYTVLRSDIYRAFTQAFAKAT----------ARIP---------RVPA------------------------ 267 (362)
T ss_pred cEEEecCCceEEECHHHHHHHHHHHHHHh----------cccC---------cCCC------------------------
Confidence 79999999999999999999999986540 0000 0000
Q ss_pred eeccCCCCCCCCCCCcccchhhHHHHHHHHHHhhccchhHHHhhhhhccccCCCCCCCCeeeeCCCCCCCCcEEEEECC-
Q 009634 386 VIDKSSDKSSDGVHDSAMCSACEMAVIWMQNKLRRNETADQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGG- 464 (530)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~fgg- 464 (530)
. ....+.|+.... ...|+....+|+|+|+|+|
T Consensus 268 ---------------------------------------~---~~~~~~C~~~~~-----~~~~~~~~~~P~it~~f~g~ 300 (362)
T cd05489 268 ---------------------------------------A---AVFPELCYPASA-----LGNTRLGYAVPAIDLVLDGG 300 (362)
T ss_pred ---------------------------------------C---CCCcCccccCCC-----cCCcccccccceEEEEEeCC
Confidence 0 000135655322 1233334679999999965
Q ss_pred -EEEEeCcCcceeeecccccceEEeeEEecccCCCCCCeeeeCHHHhcceEEEEeCCCCeEEEEEc
Q 009634 465 -KVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEA 529 (530)
Q Consensus 465 -~~~~l~p~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILG~~flr~~yvvfD~~~~rIGfA~a 529 (530)
++++|+|++|+++..+ ...|+ +|...+.. .++.||||+.|||++|++||.+++|||||++
T Consensus 301 g~~~~l~~~ny~~~~~~--~~~Cl-~f~~~~~~--~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 301 GVNWTIFGANSMVQVKG--GVACL-AFVDGGSE--PRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred CeEEEEcCCceEEEcCC--CcEEE-EEeeCCCC--CCceEEEeeheecceEEEEECCCCEeecccC
Confidence 9999999999998654 36896 56654321 2468999999999999999999999999975
No 24
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.87 E-value=7.7e-22 Score=169.05 Aligned_cols=108 Identities=57% Similarity=0.887 Sum_probs=95.6
Q ss_pred EEEEEcCCCceEEEEEcCCCCCceeeCCCCCCCcCcCCCCcc-CCCCCCCceeCCcEEEEEecCceEEEEEEEEEEEECC
Q 009634 107 GEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKY-KSSHSSTYKRNGTSAAIQYGTGAISGFFSQDNVKVGD 185 (530)
Q Consensus 107 ~~i~iGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f-~~~~SsT~~~~~~~~~~~Yg~Gs~~G~~~~Dtv~lg~ 185 (530)
++|.||||||++.|+|||||+++||+|..|. ...|..+..| +|+.|++++...+.+.+.|++|++.|.++.|+|++++
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~-~~~~~~~~~~~~~~~sst~~~~~~~~~~~Y~~g~~~g~~~~D~v~ig~ 79 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQ-SLAIYSHSSYDDPSASSTYSDNGCTFSITYGTGSLSGGLSTDTVSIGD 79 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCC-CcccccccccCCcCCCCCCCCCCcEEEEEeCCCeEEEEEEEEEEEECC
Confidence 4799999999999999999999999999986 3344455666 9999999999999999999999999999999999999
Q ss_pred eEecceeEEEEEecccccccccccceeEec
Q 009634 186 LVVKNQDFIEATKEASITFLAAKFDGILGL 215 (530)
Q Consensus 186 ~~~~~~~fg~~~~~~~~~~~~~~~~GIlGL 215 (530)
..++++.||++....+..+.....+|||||
T Consensus 80 ~~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 80 IEVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred EEECCEEEEEEEecCCccccccccccccCC
Confidence 999999999999887654455678999998
No 25
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.86 E-value=9.5e-21 Score=174.29 Aligned_cols=136 Identities=34% Similarity=0.523 Sum_probs=106.0
Q ss_pred EEEEEEEcCCCceEEEEEcCCCCCceeeCCCCCCCcCcCCCCccCCCCCCCceeC----------------------CcE
Q 009634 105 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRN----------------------GTS 162 (530)
Q Consensus 105 Y~~~i~iGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~----------------------~~~ 162 (530)
|+++|.||||+|++.|++||||+.+|++| ..+.|+|.+|+||+.. .|.
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C----------~~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C~ 70 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQC----------PDPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSCP 70 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET--------------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcC----------CCcccCCccCCcccccCCCCcchhhcccccccCCCCcCccc
Confidence 89999999999999999999999999987 2567888888888762 268
Q ss_pred EEEEecCce-EEEEEEEEEEEECC-----eEecceeEEEEEecccccccccccceeEecccCccccCCCCchHHHHHhCC
Q 009634 163 AAIQYGTGA-ISGFFSQDNVKVGD-----LVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQG 236 (530)
Q Consensus 163 ~~~~Yg~Gs-~~G~~~~Dtv~lg~-----~~~~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg 236 (530)
|.+.|++++ +.|.+++|+++++. ..+.++.|||+....+. ....+||||||+...+ ++.||.++
T Consensus 71 y~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g~---~~~~~GilGLg~~~~S------l~sQl~~~- 140 (164)
T PF14543_consen 71 YSQSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSGL---FYGADGILGLGRGPLS------LPSQLASS- 140 (164)
T ss_dssp EEEEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGTS---STTEEEEEE-SSSTTS------HHHHHHHH-
T ss_pred ceeecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeeccccC---CcCCCcccccCCCccc------HHHHHHHh-
Confidence 999999987 78999999999976 46788999999987753 2278999999998877 78888877
Q ss_pred CCCCCeEEEEecCCCCCCCCeEEEECc
Q 009634 237 LVKEPVFSFWLNRDIEGEEGGEIVFGG 263 (530)
Q Consensus 237 ~i~~~~FSl~l~~~~~~~~~G~L~fGg 263 (530)
..++||+||.+ .+....|.|+||+
T Consensus 141 --~~~~FSyCL~~-~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 141 --SGNKFSYCLPS-SSPSSSGFLSFGD 164 (164)
T ss_dssp ----SEEEEEB-S--SSSSEEEEEECS
T ss_pred --cCCeEEEECCC-CCCCCCEEEEeCc
Confidence 56899999998 2234589999995
No 26
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.78 E-value=1.1e-18 Score=160.35 Aligned_cols=153 Identities=22% Similarity=0.382 Sum_probs=104.1
Q ss_pred ceEEEEceEEECCeeeeecCC-------CceEEEeCCCCCccccHHHHHHHHHHhccCcccccchhhHHhhhhhHHHHHH
Q 009634 283 YWQFEMGDVLIDGETTGYCST-------GCNAIADSGTSLLAGPTTIITQINHAIGASGVISQECKTLVDQYGKTILEML 355 (530)
Q Consensus 283 ~w~v~l~~i~v~g~~~~~~~~-------~~~aiiDSGTt~i~lP~~~~~~l~~~i~~~~~~~~~c~~~~~~y~~~~~~~~ 355 (530)
+|.|++.+|+||++.+.+... ...++|||||++++||+++|++|.+++.+..
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~--------------------- 59 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQM--------------------- 59 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHH---------------------
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHh---------------------
Confidence 589999999999999886543 4689999999999999999999999986540
Q ss_pred HhccCcccccccCcccccCCCccccccceeeeccCCCCCCCCCCCcccchhhHHHHHHHHHHhhccchhHHHhhhhhccc
Q 009634 356 IAETQPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSACEMAVIWMQNKLRRNETADQILNYVNQLC 435 (530)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~c 435 (530)
.... .... .-...-.++|
T Consensus 60 -~~~~----------------------~~~~---------------------------------------~~~~~~~~~C 77 (161)
T PF14541_consen 60 -GAPG----------------------VSRE---------------------------------------APPFSGFDLC 77 (161)
T ss_dssp -HTCT------------------------CE---------------------------------------E---TT-S-E
T ss_pred -hhcc----------------------cccc---------------------------------------cccCCCCCce
Confidence 0000 0000 0000123467
Q ss_pred cCCCCCCCCeeeeCCCCCCCCcEEEEEC-CEEEEeCcCcceeeecccccceEEeeEEecccCCCCCCeeeeCHHHhcceE
Q 009634 436 DRLPSPNGESAVDCDNLSSMPNVSFTIG-GKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYH 514 (530)
Q Consensus 436 ~~~~~~~~~~~~~C~~~~~~P~i~f~fg-g~~~~l~p~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILG~~flr~~y 514 (530)
++.+... .. .....+|+|+|+|. |++++|+|++|++....+ ..|+.... .+ ....+..|||..+|++++
T Consensus 78 y~~~~~~----~~-~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~~~--~~Cla~~~-~~--~~~~~~~viG~~~~~~~~ 147 (161)
T PF14541_consen 78 YNLSSFG----VN-RDWAKFPTITLHFEGGADLTLPPENYFVQVSPG--VFCLAFVP-SD--ADDDGVSVIGNFQQQNYH 147 (161)
T ss_dssp EEGGCS-----EE-TTEESS--EEEEETTSEEEEE-HHHHEEEECTT--EEEESEEE-ET--STTSSSEEE-HHHCCTEE
T ss_pred eeccccc----cc-cccccCCeEEEEEeCCcceeeeccceeeeccCC--CEEEEEEc-cC--CCCCCcEEECHHHhcCcE
Confidence 7665411 01 11247999999995 899999999999987643 78996443 31 234568899999999999
Q ss_pred EEEeCCCCeEEEEE
Q 009634 515 TVFDYGNLSIGFAE 528 (530)
Q Consensus 515 vvfD~~~~rIGfA~ 528 (530)
++||++++||||+|
T Consensus 148 v~fDl~~~~igF~~ 161 (161)
T PF14541_consen 148 VVFDLENGRIGFAP 161 (161)
T ss_dssp EEEETTTTEEEEEE
T ss_pred EEEECCCCEEEEeC
Confidence 99999999999997
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=97.91 E-value=3.4e-05 Score=63.60 Aligned_cols=92 Identities=21% Similarity=0.332 Sum_probs=65.1
Q ss_pred eEEEEEEEcCCCceEEEEEcCCCCCceeeCCCCCCCcCcCCCCccCCCCCCCceeCCcEEEEEecCce-EEEEEEEEEEE
Q 009634 104 QYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGA-ISGFFSQDNVK 182 (530)
Q Consensus 104 ~Y~~~i~iGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~Gs-~~G~~~~Dtv~ 182 (530)
.|++++.||. +++++++|||++.+|+...... .+. . + ........+...+|. .......+.++
T Consensus 2 ~~~v~v~i~~--~~~~~llDTGa~~s~i~~~~~~---~l~---~--~------~~~~~~~~~~~~~G~~~~~~~~~~~i~ 65 (96)
T cd05483 2 HFVVPVTING--QPVRFLLDTGASTTVISEELAE---RLG---L--P------LTLGGKVTVQTANGRVRAARVRLDSLQ 65 (96)
T ss_pred cEEEEEEECC--EEEEEEEECCCCcEEcCHHHHH---HcC---C--C------ccCCCcEEEEecCCCccceEEEcceEE
Confidence 5899999994 9999999999999999754221 111 0 0 112234556677776 44556688999
Q ss_pred ECCeEecceeEEEEEecccccccccccceeEeccc
Q 009634 183 VGDLVVKNQDFIEATKEASITFLAAKFDGILGLGF 217 (530)
Q Consensus 183 lg~~~~~~~~fg~~~~~~~~~~~~~~~~GIlGLg~ 217 (530)
+|+..+.++.+........ ..+||||+.+
T Consensus 66 ig~~~~~~~~~~v~d~~~~------~~~gIlG~d~ 94 (96)
T cd05483 66 IGGITLRNVPAVVLPGDAL------GVDGLLGMDF 94 (96)
T ss_pred ECCcEEeccEEEEeCCccc------CCceEeChHH
Confidence 9999999888877754321 4699999863
No 28
>PF05184 SapB_1: Saposin-like type B, region 1; InterPro: IPR007856 Synonym(s):cerebroside sulphate activator, CSAct Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease, and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. Although the secondary structure of saposin B is similar to that of the known monomeric members of the saposin-like superfamily, the helices are repacked into a different tertiary arrangement to form the homodimer. A comparison of the two forms of the saposin B dimer suggests that extraction of target lipids from membranes involves a conformational change that facilitates access to the inner cavity [].; GO: 0006629 lipid metabolic process; PDB: 1N69_C 1QDM_C 4DDJ_A 2DOB_A 1OF9_A 2Z9A_A 1M12_A 2GTG_A 1SN6_A 2QYP_B ....
Probab=97.58 E-value=4.5e-05 Score=52.08 Aligned_cols=38 Identities=26% Similarity=0.646 Sum_probs=36.1
Q ss_pred ccchhhHHHHHHHHHHhhccchhHHHhhhhhccccCCC
Q 009634 402 AMCSACEMAVIWMQNKLRRNETADQILNYVNQLCDRLP 439 (530)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~c~~~~ 439 (530)
..|.+|++++.++++.|..|.|+++|.+.+++.|..+|
T Consensus 2 ~~C~~C~~~v~~i~~~l~~~~t~~~I~~~l~~~C~~lP 39 (39)
T PF05184_consen 2 DECDICKFVVKEIEKLLKNNKTEEEIKKALEKACNKLP 39 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHSTCHHHHHHHHHHHHHTTSC
T ss_pred CcchHHHHHHHHHHHHHHcCccHHHHHHHHHHHHhhCc
Confidence 57999999999999999999999999999999998875
No 29
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=97.05 E-value=0.0037 Score=54.35 Aligned_cols=101 Identities=20% Similarity=0.349 Sum_probs=66.9
Q ss_pred EecccccCceEEEEEEEcCCCceEEEEEcCCCCCceeeCCCCCCCcCcCCCCccCCCCCCCceeCCcEEEEEecCceE-E
Q 009634 95 VALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAI-S 173 (530)
Q Consensus 95 ~pl~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~Gs~-~ 173 (530)
+++.-..++.|++++.|.. +++.+++|||++.+.++...-. .-..++.. ......+.-..|.. .
T Consensus 2 ~~i~~~~~g~~~v~~~InG--~~~~flVDTGAs~t~is~~~A~-------~Lgl~~~~------~~~~~~~~ta~G~~~~ 66 (121)
T TIGR02281 2 VQLAKDGDGHFYATGRVNG--RNVRFLVDTGATSVALNEEDAQ-------RLGLDLNR------LGYTVTVSTANGQIKA 66 (121)
T ss_pred EEEEEcCCCeEEEEEEECC--EEEEEEEECCCCcEEcCHHHHH-------HcCCCccc------CCceEEEEeCCCcEEE
Confidence 4556666899999999986 8999999999999988643210 00111111 12233444455654 3
Q ss_pred EEEEEEEEEECCeEecceeEEEEEecccccccccccceeEeccc
Q 009634 174 GFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGF 217 (530)
Q Consensus 174 G~~~~Dtv~lg~~~~~~~~fg~~~~~~~~~~~~~~~~GIlGLg~ 217 (530)
..+.-|.+.+|+....|..+.+..... ..+|+||+.+
T Consensus 67 ~~~~l~~l~iG~~~~~nv~~~v~~~~~-------~~~~LLGm~f 103 (121)
T TIGR02281 67 ARVTLDRVAIGGIVVNDVDAMVAEGGA-------LSESLLGMSF 103 (121)
T ss_pred EEEEeCEEEECCEEEeCcEEEEeCCCc-------CCceEcCHHH
Confidence 456889999999999999977664211 1279999973
No 30
>PF13650 Asp_protease_2: Aspartyl protease
Probab=96.26 E-value=0.031 Score=45.09 Aligned_cols=88 Identities=19% Similarity=0.266 Sum_probs=53.7
Q ss_pred EEEEEcCCCceEEEEEcCCCCCceeeCCCCCCCcCcCCCCccCCCCCCCceeCCcEEEEEecCce-EEEEEEEEEEEECC
Q 009634 107 GEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGA-ISGFFSQDNVKVGD 185 (530)
Q Consensus 107 ~~i~iGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~Gs-~~G~~~~Dtv~lg~ 185 (530)
+++.|+. +++++++|||++.+.+....+. .. ...+.. ......+.-.+|. .......+.+++|+
T Consensus 1 V~v~vng--~~~~~liDTGa~~~~i~~~~~~------~l-~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~i~ig~ 65 (90)
T PF13650_consen 1 VPVKVNG--KPVRFLIDTGASISVISRSLAK------KL-GLKPRP------KSVPISVSGAGGSVTVYRGRVDSITIGG 65 (90)
T ss_pred CEEEECC--EEEEEEEcCCCCcEEECHHHHH------Hc-CCCCcC------CceeEEEEeCCCCEEEEEEEEEEEEECC
Confidence 3577775 8999999999998887643321 00 011111 1112333334444 34556666899999
Q ss_pred eEecceeEEEEEecccccccccccceeEecc
Q 009634 186 LVVKNQDFIEATKEASITFLAAKFDGILGLG 216 (530)
Q Consensus 186 ~~~~~~~fg~~~~~~~~~~~~~~~~GIlGLg 216 (530)
..+.+..|..... ....+||||+-
T Consensus 66 ~~~~~~~~~v~~~-------~~~~~~iLG~d 89 (90)
T PF13650_consen 66 ITLKNVPFLVVDL-------GDPIDGILGMD 89 (90)
T ss_pred EEEEeEEEEEECC-------CCCCEEEeCCc
Confidence 9888888766651 23568999974
No 31
>PF03489 SapB_2: Saposin-like type B, region 2; InterPro: IPR008138 Saposins are small lysosomal proteins that serve as activators of various lysosomal lipid-degrading enzymes []. They probably act by isolating the lipid substrate from the membrane surroundings, thus making it more accessible to the soluble degradative enzymes. All mammalian saposins are synthesized as a single precursor molecule (prosaposin) which contains four Saposin-B domains, yielding the active saposins after proteolytic cleavage, and two Saposin-A domains that are removed in the activation reaction. The Saposin-B domains also occur in other proteins, many of them active in the lysis of membranes [, ].; PDB: 3BQQ_A 2RB3_B 2R0R_A 3BQP_A 2R1Q_A 1NKL_A 1L9L_A 1QDM_C 3RFI_A 4DDJ_A ....
Probab=95.57 E-value=0.0079 Score=39.87 Aligned_cols=33 Identities=52% Similarity=1.148 Sum_probs=31.6
Q ss_pred chhhHHhhhhhHHHHHHHhccCcccccccCccc
Q 009634 339 ECKTLVDQYGKTILEMLIAETQPQKICSQMGLC 371 (530)
Q Consensus 339 ~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 371 (530)
.|+.+++.|++.+++.+....+|+.+|...++|
T Consensus 3 ~C~~~V~~y~~~ii~~l~~~~~p~~iC~~i~~C 35 (35)
T PF03489_consen 3 ECKNFVDQYGPQIIQLLEKQLDPQQICTKIGLC 35 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHHhcCChHHHHHHcCCC
Confidence 599999999999999999999999999999987
No 32
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=95.53 E-value=0.21 Score=50.92 Aligned_cols=199 Identities=19% Similarity=0.212 Sum_probs=104.2
Q ss_pred EEEEEEEcCCC----ceE-EEEEcCCCCCceeeCCCCCCCcCcCCCCccCCCCCCCceeCCcEEEEEecCceEEEEEEEE
Q 009634 105 YFGEVSIGTPS----QTF-TVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAISGFFSQD 179 (530)
Q Consensus 105 Y~~~i~iGtP~----Q~~-~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~Gs~~G~~~~D 179 (530)
=++.|+|=-|. |.+ +|++||||.-+=|..+.-.. .-........+. ...-.--..|++|..=|-+.+.
T Consensus 24 p~VsVtVC~PGts~CqTIdnvlVDTGS~GLRi~~sAl~~----~l~~~Lp~~t~~---g~~laEC~~F~sgytWGsVr~A 96 (370)
T PF11925_consen 24 PTVSVTVCAPGTSNCQTIDNVLVDTGSYGLRIFASALPS----SLAGSLPQQTGG---GAPLAECAQFASGYTWGSVRTA 96 (370)
T ss_pred eeeEEEEeCCCCCCceeeCcEEEeccchhhhHHHhhhch----hhhccCCcccCC---CcchhhhhhccCcccccceEEE
Confidence 45666664443 566 49999999987776542210 000011111110 0011122467777767899999
Q ss_pred EEEECCeEecceeEEEEEecc-----------c---ccccccccceeEecccCccccC----------------CCCc-h
Q 009634 180 NVKVGDLVVKNQDFIEATKEA-----------S---ITFLAAKFDGILGLGFQEISIG----------------KAIP-V 228 (530)
Q Consensus 180 tv~lg~~~~~~~~fg~~~~~~-----------~---~~~~~~~~~GIlGLg~~~~s~~----------------~~~~-~ 228 (530)
.|+|++....+..+.++.+.. + ..-....++||||+|.-..... ...+ .
T Consensus 97 dV~igge~A~~iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~~~DcG~~C~~sa~~~~YY~C~~~~sCt 176 (370)
T PF11925_consen 97 DVTIGGETASSIPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPFPYDCGAACAQSALPGNYYSCPSGGSCT 176 (370)
T ss_pred EEEEcCeeccccCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCCccccCchhhcccCCCceEECCCCCCee
Confidence 999999776666666654320 0 0112456799999996543220 0000 0
Q ss_pred HHHHHhCCCCCCCeEEEEecCC---------C---CCCCCeEEEECcccCC--CcccceEEEeccCCCceEEEEceEEEC
Q 009634 229 WYNMLDQGLVKEPVFSFWLNRD---------I---EGEEGGEIVFGGVDPD--HYKGEHTYVPVTKKGYWQFEMGDVLID 294 (530)
Q Consensus 229 ~~~L~~qg~i~~~~FSl~l~~~---------~---~~~~~G~L~fGg~D~~--~~~g~l~~~p~~~~~~w~v~l~~i~v~ 294 (530)
-..+-...++..|+..|-.+++ + .....|.|+||=--++ ...+.....+..+.++... .++
T Consensus 177 ~t~v~~~~QV~NPV~~Fa~DNNGvii~lP~v~~~Ga~SatG~LiFGIgTQsNN~l~~~~~~~~~~~~G~~tt-----~~~ 251 (370)
T PF11925_consen 177 STTVPLAQQVANPVARFATDNNGVIIQLPAVSASGAASATGTLIFGIGTQSNNALPSGATVLTTDSNGDFTT-----TFN 251 (370)
T ss_pred cccchhhhcccCcccccCccCCeEEEecCCCCCCCCccceEEEEEecCCcccCcccccceEEeecCCceEEE-----Eec
Confidence 0111111225556655533322 1 2335799999832222 1222245555555555322 334
Q ss_pred CeeeeecCCCceEEEeCCCCCccccHH
Q 009634 295 GETTGYCSTGCNAIADSGTSLLAGPTT 321 (530)
Q Consensus 295 g~~~~~~~~~~~aiiDSGTt~i~lP~~ 321 (530)
|+... ...||||+.-.++|+.
T Consensus 252 G~t~~------~sf~DSGSNg~fF~d~ 272 (370)
T PF11925_consen 252 GQTYS------ASFFDSGSNGYFFPDS 272 (370)
T ss_pred Cceee------eeeEecCCceeeccCC
Confidence 44332 3499999999998864
No 33
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=95.50 E-value=0.087 Score=49.16 Aligned_cols=91 Identities=16% Similarity=0.223 Sum_probs=66.4
Q ss_pred CcceEecccccCceEEEEEEEcCCCceEEEEEcCCCCCceeeCCCCCCCcCcCCCCccCCCCCCCceeCCcEEEEEecCc
Q 009634 91 DTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTG 170 (530)
Q Consensus 91 ~~~~~pl~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~G 170 (530)
+...+.|....++.|.++..|-. |+++.++|||-+.+-++...-. .--++... .+.++.+.-.+|
T Consensus 92 g~~~v~Lak~~~GHF~a~~~VNG--k~v~fLVDTGATsVal~~~dA~-------RlGid~~~------l~y~~~v~TANG 156 (215)
T COG3577 92 GYQEVSLAKSRDGHFEANGRVNG--KKVDFLVDTGATSVALNEEDAR-------RLGIDLNS------LDYTITVSTANG 156 (215)
T ss_pred CceEEEEEecCCCcEEEEEEECC--EEEEEEEecCcceeecCHHHHH-------HhCCCccc------cCCceEEEccCC
Confidence 34478888888999999999986 9999999999999888654321 12344332 234556666778
Q ss_pred eEE-EEEEEEEEEECCeEecceeEEEE
Q 009634 171 AIS-GFFSQDNVKVGDLVVKNQDFIEA 196 (530)
Q Consensus 171 s~~-G~~~~Dtv~lg~~~~~~~~fg~~ 196 (530)
... ..+--|+|.||+..+.|+.=.++
T Consensus 157 ~~~AA~V~Ld~v~IG~I~~~nV~A~V~ 183 (215)
T COG3577 157 RARAAPVTLDRVQIGGIRVKNVDAMVA 183 (215)
T ss_pred ccccceEEeeeEEEccEEEcCchhhee
Confidence 754 56778999999999888775444
No 34
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=95.05 E-value=0.16 Score=44.25 Aligned_cols=96 Identities=20% Similarity=0.229 Sum_probs=59.8
Q ss_pred ecccccCceEEEEEEEcCCCceEEEEEcCCCCCceeeCCCCCCCcCcCCCCccCCCCCCCceeCCcEEE-EEecCce--E
Q 009634 96 ALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAA-IQYGTGA--I 172 (530)
Q Consensus 96 pl~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~-~~Yg~Gs--~ 172 (530)
|........+++++.|+. +++.+++|||++.+++...-+. .+.- ..... ..+. ...+.|. .
T Consensus 8 ~~~~~~~~~~~v~~~Ing--~~~~~LvDTGAs~s~Is~~~a~---~lgl----~~~~~-------~~~~~~~~g~g~~~~ 71 (124)
T cd05479 8 PESFGKVPMLYINVEING--VPVKAFVDSGAQMTIMSKACAE---KCGL----MRLID-------KRFQGIAKGVGTQKI 71 (124)
T ss_pred cchhceeeEEEEEEEECC--EEEEEEEeCCCceEEeCHHHHH---HcCC----ccccC-------cceEEEEecCCCcEE
Confidence 333334567999999996 8899999999999998643221 1110 00001 1111 2233232 5
Q ss_pred EEEEEEEEEEECCeEecceeEEEEEecccccccccccceeEecc
Q 009634 173 SGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLG 216 (530)
Q Consensus 173 ~G~~~~Dtv~lg~~~~~~~~fg~~~~~~~~~~~~~~~~GIlGLg 216 (530)
.|....+.+.+++...+ ..|.+... ...|+|||+-
T Consensus 72 ~g~~~~~~l~i~~~~~~-~~~~Vl~~--------~~~d~ILG~d 106 (124)
T cd05479 72 LGRIHLAQVKIGNLFLP-CSFTVLED--------DDVDFLIGLD 106 (124)
T ss_pred EeEEEEEEEEECCEEee-eEEEEECC--------CCcCEEecHH
Confidence 67777889999998765 56655431 2568999996
No 35
>KOG1340 consensus Prosaposin [Lipid transport and metabolism; Carbohydrate transport and metabolism]
Probab=94.19 E-value=0.064 Score=51.09 Aligned_cols=89 Identities=26% Similarity=0.545 Sum_probs=70.6
Q ss_pred cchhhHHhhhhhHHHHHHHhccCcccccccCcccccCCCccccccceeeeccCCCCCCCCCCCcccchhhHHHHHHHHHH
Q 009634 338 QECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSACEMAVIWMQNK 417 (530)
Q Consensus 338 ~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (530)
+.|..+++.|++.+++.+.+.+.|+.+|..+++|+... . +...+...+ ..+..|.+|.+++.+....
T Consensus 77 ~~C~~fv~~y~~~ii~~l~~~~~P~~vC~~l~lC~~~~-~----~~~~~~~~~--------~~~~~C~~C~~~V~~~~~~ 143 (218)
T KOG1340|consen 77 FECLSFVDSYLDPIIKELESGTAPEDVCKKLNLCSASA-G----PVSEVFASQ--------PAAGECELCRETVTEADTK 143 (218)
T ss_pred HHHHHHHHHhhhHHHHHHHhccCHHHHHHHhccCCccc-c----hhhhhhhhc--------ccccccHHHHHHHHHHHHh
Confidence 47999999999999999999999999999999998511 1 111111111 1367899999999999999
Q ss_pred hhc-cchhHHHhhhhhccccCCC
Q 009634 418 LRR-NETADQILNYVNQLCDRLP 439 (530)
Q Consensus 418 ~~~-~~t~~~~~~~~~~~c~~~~ 439 (530)
|.- +.++..+.......|..++
T Consensus 144 l~d~~~~k~~~~~~~~~~ck~l~ 166 (218)
T KOG1340|consen 144 LQDKPKTKGKIVSLLLKSCKSLP 166 (218)
T ss_pred cccchhHHHHHHHHHHhhccCCc
Confidence 998 8888888888888886554
No 36
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=93.13 E-value=0.63 Score=40.46 Aligned_cols=25 Identities=16% Similarity=0.256 Sum_probs=22.4
Q ss_pred eeeeCHHHhcceEEEEeCCCCeEEE
Q 009634 502 LWILGDVFMGRYHTVFDYGNLSIGF 526 (530)
Q Consensus 502 ~~ILG~~flr~~yvvfD~~~~rIGf 526 (530)
..|||..||+.+-.+.|+.+++|-+
T Consensus 100 d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 100 DFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred CEEecHHHHHhCCeEEECCCCEEEC
Confidence 5699999999999999999998753
No 37
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=92.89 E-value=0.66 Score=37.78 Aligned_cols=75 Identities=15% Similarity=0.098 Sum_probs=46.9
Q ss_pred EEEEEEEcCCCceEEEEEcCCCCCceeeCCCCCCCcCcCCCCccCCCCCCCceeCCcEEEEEecCce---EEEEEEEEEE
Q 009634 105 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGA---ISGFFSQDNV 181 (530)
Q Consensus 105 Y~~~i~iGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~Gs---~~G~~~~Dtv 181 (530)
|++.+.|+. +++.+++||||+..++....+. ....+. .......+.-.+|. ..|.. .+.+
T Consensus 1 ~~~~~~Ing--~~i~~lvDTGA~~svis~~~~~--------~lg~~~------~~~~~~~v~~a~G~~~~~~G~~-~~~v 63 (91)
T cd05484 1 KTVTLLVNG--KPLKFQLDTGSAITVISEKTWR--------KLGSPP------LKPTKKRLRTATGTKLSVLGQI-LVTV 63 (91)
T ss_pred CEEEEEECC--EEEEEEEcCCcceEEeCHHHHH--------HhCCCc------cccccEEEEecCCCEeeEeEEE-EEEE
Confidence 578899987 9999999999999999754431 011110 11122333334443 45766 7899
Q ss_pred EECCeEecceeEEEEE
Q 009634 182 KVGDLVVKNQDFIEAT 197 (530)
Q Consensus 182 ~lg~~~~~~~~fg~~~ 197 (530)
++++... ...|-+..
T Consensus 64 ~~~~~~~-~~~~~v~~ 78 (91)
T cd05484 64 KYGGKTK-VLTLYVVK 78 (91)
T ss_pred EECCEEE-EEEEEEEE
Confidence 9998763 35554443
No 38
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=91.36 E-value=3 Score=36.09 Aligned_cols=37 Identities=14% Similarity=0.207 Sum_probs=27.4
Q ss_pred CCCceEEEEceEEECCeeeeecCCCceEEEeCCCCCccccHHHHHHH
Q 009634 280 KKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQI 326 (530)
Q Consensus 280 ~~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDSGTt~i~lP~~~~~~l 326 (530)
..+++.+ .+.|||+.+ .++||||.+.+.++.++.+++
T Consensus 8 ~~g~~~v---~~~InG~~~-------~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 8 GDGHFYA---TGRVNGRNV-------RFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCCeEEE---EEEECCEEE-------EEEEECCCCcEEcCHHHHHHc
Confidence 3455544 346777644 689999999999999987765
No 39
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=90.72 E-value=1 Score=39.82 Aligned_cols=27 Identities=22% Similarity=0.393 Sum_probs=24.7
Q ss_pred eeeeCHHHhcceEEEEeCCCCeEEEEE
Q 009634 502 LWILGDVFMGRYHTVFDYGNLSIGFAE 528 (530)
Q Consensus 502 ~~ILG~~flr~~yvvfD~~~~rIGfA~ 528 (530)
..|||.++|+.+...-|+.+++|-|-.
T Consensus 105 DvILGm~WL~~~~~~IDw~~k~v~f~~ 131 (135)
T PF08284_consen 105 DVILGMDWLKKHNPVIDWATKTVTFNS 131 (135)
T ss_pred eeEeccchHHhCCCEEEccCCEEEEeC
Confidence 469999999999999999999998864
No 40
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=90.23 E-value=1.7 Score=34.97 Aligned_cols=81 Identities=19% Similarity=0.198 Sum_probs=46.8
Q ss_pred EEEEcCCCceEEEEEcCCCCCceeeCCCCCCCcCcCCCCccCCCCCCCceeCCcEEEEEecCceEEEEE-EEE-EEEECC
Q 009634 108 EVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAISGFF-SQD-NVKVGD 185 (530)
Q Consensus 108 ~i~iGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~Gs~~G~~-~~D-tv~lg~ 185 (530)
.+.|.. +++++++|||++.+-+....+. .. ....+...+.=..|.....+ ..+ .+.+|+
T Consensus 2 ~v~InG--~~~~fLvDTGA~~tii~~~~a~---~~--------------~~~~~~~~v~gagG~~~~~v~~~~~~v~vg~ 62 (86)
T cd06095 2 TITVEG--VPIVFLVDTGATHSVLKSDLGP---KQ--------------ELSTTSVLIRGVSGQSQQPVTTYRTLVDLGG 62 (86)
T ss_pred EEEECC--EEEEEEEECCCCeEEECHHHhh---hc--------------cCCCCcEEEEeCCCcccccEEEeeeEEEECC
Confidence 455654 8999999999999999765442 00 01122333333344321111 123 699999
Q ss_pred eEecceeEEEEEecccccccccccceeEeccc
Q 009634 186 LVVKNQDFIEATKEASITFLAAKFDGILGLGF 217 (530)
Q Consensus 186 ~~~~~~~fg~~~~~~~~~~~~~~~~GIlGLg~ 217 (530)
....+ .|...... .++|||+.+
T Consensus 63 ~~~~~-~~~v~~~~---------~~~lLG~df 84 (86)
T cd06095 63 HTVSH-SFLVVPNC---------PDPLLGRDL 84 (86)
T ss_pred EEEEE-EEEEEcCC---------CCcEechhh
Confidence 88875 34443211 278999864
No 41
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=86.84 E-value=4.2 Score=34.32 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=20.8
Q ss_pred CeeeeCHHHhcceEEEEeCCCCeE
Q 009634 501 PLWILGDVFMGRYHTVFDYGNLSI 524 (530)
Q Consensus 501 ~~~ILG~~flr~~yvvfD~~~~rI 524 (530)
+..+||..||+++-++.|+.++++
T Consensus 84 ~~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 84 DEPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred CccEecHHHHhhCCEEEehhhCcC
Confidence 356999999999999999988753
No 42
>smart00741 SapB Saposin (B) Domains. Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present.
Probab=86.54 E-value=0.57 Score=36.12 Aligned_cols=37 Identities=32% Similarity=0.733 Sum_probs=35.5
Q ss_pred cchhhHHHHHHHHHHhhccchhHHHhhhhhccccCCC
Q 009634 403 MCSACEMAVIWMQNKLRRNETADQILNYVNQLCDRLP 439 (530)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~c~~~~ 439 (530)
.|..|+.++...+..+..+.+.+.+.+.+.+.|..+|
T Consensus 2 ~C~~C~~~v~~~~~~~~~~~~~~~i~~~~~~~C~~~~ 38 (76)
T smart00741 2 LCELCEDVVKQLENLLKDNKTEEEIKKALEKVCKKLP 38 (76)
T ss_pred cChHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHcC
Confidence 5999999999999999999999999999999999987
No 43
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=82.68 E-value=2.2 Score=33.11 Aligned_cols=34 Identities=21% Similarity=0.340 Sum_probs=29.4
Q ss_pred cCceEEEEEEEcCCCceEEEEEcCCCCCceeeCCCC
Q 009634 101 MDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKC 136 (530)
Q Consensus 101 ~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~WV~~~~C 136 (530)
..+.+++.+.||. +.+..++|||++...|+...+
T Consensus 5 ~~g~~~v~~~I~g--~~~~alvDtGat~~fis~~~a 38 (72)
T PF13975_consen 5 DPGLMYVPVSIGG--VQVKALVDTGATHNFISESLA 38 (72)
T ss_pred cCCEEEEEEEECC--EEEEEEEeCCCcceecCHHHH
Confidence 3678999999998 999999999999998875543
No 44
>PF07966 A1_Propeptide: A1 Propeptide ; InterPro: IPR012848 Most eukaryotic endopeptidases (MEROPS peptidase family A1) are synthesised with signal and propeptides. The animal pepsin-like endopeptidase propeptides form a distinct family of propeptides, which contain a conserved motif approximately 30 residues long. In pepsinogen A, the first 11 residues of the mature pepsin sequence are displaced by residues of the propeptide. The propeptide contains two helices that block the active site cleft, in particular the conserved Asp11 residue, in pepsin, hydrogen bonds to a conserved Arg residue in the propeptide. This hydrogen bond stabilises the propeptide conformation and is probably responsible for triggering the conversion of pepsinogen to pepsin under acidic conditions [, ]. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1AVF_Q 1HTR_P 3PSG_A 2PSG_A 3VCM_Q 1TZS_P.
Probab=74.52 E-value=2.1 Score=26.98 Aligned_cols=24 Identities=33% Similarity=0.221 Sum_probs=16.2
Q ss_pred eEEEeeeeecchhhhhhccCcccc
Q 009634 46 LVRIGLRKKKLDQINRLVGQTVSK 69 (530)
Q Consensus 46 ~~~ipl~~~~~~~~~~~~~~~~~~ 69 (530)
++||||+|.++.++.+.+.+...+
T Consensus 1 l~rIPL~K~kS~R~~L~e~g~~~~ 24 (29)
T PF07966_consen 1 LVRIPLKKFKSMRETLREKGTLEE 24 (29)
T ss_dssp -EEEEEEE---HHHHHHHTT-HHH
T ss_pred CEEEeccCCchHHHHHHHcCchHH
Confidence 479999999999999988777654
No 45
>PF13650 Asp_protease_2: Aspartyl protease
Probab=74.06 E-value=4.5 Score=32.10 Aligned_cols=29 Identities=17% Similarity=0.398 Sum_probs=23.8
Q ss_pred EEECCeeeeecCCCceEEEeCCCCCccccHHHHHHH
Q 009634 291 VLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQI 326 (530)
Q Consensus 291 i~v~g~~~~~~~~~~~aiiDSGTt~i~lP~~~~~~l 326 (530)
+.|+|+.+ .+++|||++.+.++++.++++
T Consensus 3 v~vng~~~-------~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGKPV-------RFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCEEE-------EEEEcCCCCcEEECHHHHHHc
Confidence 56677644 689999999999999988776
No 46
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=70.74 E-value=5.2 Score=32.87 Aligned_cols=29 Identities=17% Similarity=0.312 Sum_probs=23.5
Q ss_pred EEEEEEcCCCceEEEEEcCCCCCceeeCCCC
Q 009634 106 FGEVSIGTPSQTFTVIFDTGSSNLWVPSAKC 136 (530)
Q Consensus 106 ~~~i~iGtP~Q~~~v~lDTGSs~~WV~~~~C 136 (530)
+.+|.+.. +++.+++||||+.+-++...+
T Consensus 7 ~i~v~i~g--~~i~~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 7 YITVKING--KKIKALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEEEEETT--EEEEEEEETTBSSEEESSGGS
T ss_pred eEEEeECC--EEEEEEEecCCCcceeccccc
Confidence 56777776 899999999999988875443
No 47
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=69.74 E-value=8.4 Score=29.82 Aligned_cols=30 Identities=20% Similarity=0.300 Sum_probs=24.8
Q ss_pred eEEECCeeeeecCCCceEEEeCCCCCccccHHHHHHH
Q 009634 290 DVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQI 326 (530)
Q Consensus 290 ~i~v~g~~~~~~~~~~~aiiDSGTt~i~lP~~~~~~l 326 (530)
.+.+++..+ .+++|||++-.+++.+..+.+
T Consensus 12 ~~~I~g~~~-------~alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 12 PVSIGGVQV-------KALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEEECCEEE-------EEEEeCCCcceecCHHHHHHh
Confidence 356677554 589999999999999988887
No 48
>smart00741 SapB Saposin (B) Domains. Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present.
Probab=68.89 E-value=3.5 Score=31.55 Aligned_cols=35 Identities=43% Similarity=1.036 Sum_probs=31.9
Q ss_pred ccchhhHHhhhhhHHHHHHHhccCcccccccCccc
Q 009634 337 SQECKTLVDQYGKTILEMLIAETQPQKICSQMGLC 371 (530)
Q Consensus 337 ~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 371 (530)
...|+.+++.|++.+++.+.....|+.+|..+++|
T Consensus 42 ~~~C~~~v~~~~~~ii~~i~~~~~p~~iC~~l~~C 76 (76)
T smart00741 42 SDQCKEFVDQYGPEIIDLLEQGLDPKDVCQKLGLC 76 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHcCCC
Confidence 45699999999999999999999999999999887
No 49
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=65.99 E-value=8.8 Score=31.03 Aligned_cols=30 Identities=13% Similarity=0.309 Sum_probs=25.2
Q ss_pred eEEECCeeeeecCCCceEEEeCCCCCccccHHHHHHH
Q 009634 290 DVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQI 326 (530)
Q Consensus 290 ~i~v~g~~~~~~~~~~~aiiDSGTt~i~lP~~~~~~l 326 (530)
.+.|+|+.+ .+++|||++...++.+.+.++
T Consensus 4 ~~~Ing~~i-------~~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 4 TLLVNGKPL-------KFQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEECCEEE-------EEEEcCCcceEEeCHHHHHHh
Confidence 457788766 589999999999999988866
No 50
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=65.34 E-value=5 Score=33.12 Aligned_cols=25 Identities=16% Similarity=0.081 Sum_probs=11.8
Q ss_pred ccchhhHHHHHHHHHHHHHhhhhhcCC
Q 009634 17 MGTKFTAIRVALFLFLILSPAAFALPN 43 (530)
Q Consensus 17 m~~~~~~~~~~l~~~~l~~~~~~a~s~ 43 (530)
|++++.++ +.+++++++++++++++
T Consensus 1 MaSK~~ll--L~l~LA~lLlisSevaa 25 (95)
T PF07172_consen 1 MASKAFLL--LGLLLAALLLISSEVAA 25 (95)
T ss_pred CchhHHHH--HHHHHHHHHHHHhhhhh
Confidence 78666555 33333333444444443
No 51
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=62.73 E-value=13 Score=29.71 Aligned_cols=30 Identities=20% Similarity=0.341 Sum_probs=23.6
Q ss_pred eEEECCeeeeecCCCceEEEeCCCCCccccHHHHHHH
Q 009634 290 DVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQI 326 (530)
Q Consensus 290 ~i~v~g~~~~~~~~~~~aiiDSGTt~i~lP~~~~~~l 326 (530)
.+.+|++.+ .+++|||++.+.++.+..+.+
T Consensus 6 ~v~i~~~~~-------~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 6 PVTINGQPV-------RFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEECCEEE-------EEEEECCCCcEEcCHHHHHHc
Confidence 456666544 689999999999999877665
No 52
>KOG1340 consensus Prosaposin [Lipid transport and metabolism; Carbohydrate transport and metabolism]
Probab=60.55 E-value=4.7 Score=38.56 Aligned_cols=44 Identities=25% Similarity=0.622 Sum_probs=38.4
Q ss_pred hccCcccccchhhHHhhhhhHHHHHHHhccCcccccccCccccc
Q 009634 330 IGASGVISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTF 373 (530)
Q Consensus 330 i~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (530)
.....++...|++++..|++.++..+....+|..+|++++.|+.
T Consensus 162 ck~l~~~~~~Ck~fV~~y~p~~i~~l~~~~~p~~vC~~l~~C~~ 205 (218)
T KOG1340|consen 162 CKSLPNYEQKCKQFVHEYGPQLITLLEEGLDPHDVCTALGACPP 205 (218)
T ss_pred ccCCccchhHHHHHHHHhccHHHHHHHHhhCchhHHHHhhcCCc
Confidence 33445566779999999999999999999999999999999984
No 53
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=56.63 E-value=14 Score=29.54 Aligned_cols=29 Identities=10% Similarity=0.182 Sum_probs=24.2
Q ss_pred EEECCeeeeecCCCceEEEeCCCCCccccHHHHHHH
Q 009634 291 VLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQI 326 (530)
Q Consensus 291 i~v~g~~~~~~~~~~~aiiDSGTt~i~lP~~~~~~l 326 (530)
+.+||+.+ ..++|||.+.+.++++..+.+
T Consensus 3 v~InG~~~-------~fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPI-------VFLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEE-------EEEEECCCCeEEECHHHhhhc
Confidence 56777655 579999999999999988875
No 54
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=55.70 E-value=15 Score=29.83 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=21.4
Q ss_pred EEEEcCCCceEEEEEcCCCCCceeeCCC
Q 009634 108 EVSIGTPSQTFTVIFDTGSSNLWVPSAK 135 (530)
Q Consensus 108 ~i~iGtP~Q~~~v~lDTGSs~~WV~~~~ 135 (530)
.+.|+. |.+++++|||++++.+....
T Consensus 2 ~~~i~g--~~~~~llDTGAd~Tvi~~~~ 27 (87)
T cd05482 2 TLYING--KLFEGLLDTGADVSIIAEND 27 (87)
T ss_pred EEEECC--EEEEEEEccCCCCeEEcccc
Confidence 456774 99999999999999997544
No 55
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=54.65 E-value=42 Score=30.60 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=21.2
Q ss_pred CCceEEEeCCCCCccccHHHHHHHH
Q 009634 303 TGCNAIADSGTSLLAGPTTIITQIN 327 (530)
Q Consensus 303 ~~~~aiiDSGTt~i~lP~~~~~~l~ 327 (530)
....+++|||++..++..++.+.|.
T Consensus 44 t~i~vLfDSGSPTSfIr~di~~kL~ 68 (177)
T PF12384_consen 44 TPIKVLFDSGSPTSFIRSDIVEKLE 68 (177)
T ss_pred cEEEEEEeCCCccceeehhhHHhhC
Confidence 3457999999999999999888774
No 56
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=48.75 E-value=46 Score=28.95 Aligned_cols=91 Identities=21% Similarity=0.330 Sum_probs=49.3
Q ss_pred CceEEEEEEEcCCCceEEEEEcCCCCCceeeCCCCCCCcCcCCCCccCCCCCCCceeCCcEEEEEecCce--EEEEEEEE
Q 009634 102 DAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGA--ISGFFSQD 179 (530)
Q Consensus 102 ~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~Gs--~~G~~~~D 179 (530)
....|++++|+. ++++.++|||...+-+.. .| ...|.-...-+. ..-...+|-|. +-|.+..-
T Consensus 22 v~mLyI~~~ing--~~vkA~VDtGAQ~tims~-~~--a~r~gL~~lid~----------r~~g~a~GvG~~~i~G~Ih~~ 86 (124)
T PF09668_consen 22 VSMLYINCKING--VPVKAFVDTGAQSTIMSK-SC--AERCGLMRLIDK----------RFAGVAKGVGTQKILGRIHSV 86 (124)
T ss_dssp ----EEEEEETT--EEEEEEEETT-SS-EEEH-HH--HHHTTGGGGEEG----------GG-EE-------EEEEEEEEE
T ss_pred cceEEEEEEECC--EEEEEEEeCCCCccccCH-HH--HHHcCChhhccc----------cccccccCCCcCceeEEEEEE
Confidence 346899999997 999999999999888753 33 134442211111 11122344454 67989888
Q ss_pred EEEECCeEecceeEEEEEecccccccccccceeEecc
Q 009634 180 NVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLG 216 (530)
Q Consensus 180 tv~lg~~~~~~~~fg~~~~~~~~~~~~~~~~GIlGLg 216 (530)
.+.+|+..++ ..|-+.. ....+=+|||-
T Consensus 87 ~l~ig~~~~~-~s~~Vle--------~~~~d~llGld 114 (124)
T PF09668_consen 87 QLKIGGLFFP-CSFTVLE--------DQDVDLLLGLD 114 (124)
T ss_dssp EEEETTEEEE-EEEEEET--------TSSSSEEEEHH
T ss_pred EEEECCEEEE-EEEEEeC--------CCCcceeeeHH
Confidence 9999886554 4443333 12335677774
No 57
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=41.90 E-value=27 Score=28.46 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=21.3
Q ss_pred eEEECCeeeeecCCCceEEEeCCCCCccccHHHH
Q 009634 290 DVLIDGETTGYCSTGCNAIADSGTSLLAGPTTII 323 (530)
Q Consensus 290 ~i~v~g~~~~~~~~~~~aiiDSGTt~i~lP~~~~ 323 (530)
.|.++|+.+ .++||||+..+.+|.+.+
T Consensus 9 ~v~i~g~~i-------~~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 9 TVKINGKKI-------KALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEEETTEEE-------EEEEETTBSSEEESSGGS
T ss_pred EEeECCEEE-------EEEEecCCCcceeccccc
Confidence 456677655 689999999999998644
No 58
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=41.41 E-value=32 Score=31.27 Aligned_cols=29 Identities=24% Similarity=0.433 Sum_probs=22.2
Q ss_pred EEEEEEcCCCceEEEEEcCCCCCceeeCC
Q 009634 106 FGEVSIGTPSQTFTVIFDTGSSNLWVPSA 134 (530)
Q Consensus 106 ~~~i~iGtP~Q~~~v~lDTGSs~~WV~~~ 134 (530)
+..+.++.-..+++++|||||+...+...
T Consensus 34 T~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 34 TAIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred EEEEEEeecCcEEEEEEeCCCccceeehh
Confidence 44555555568999999999999888653
No 59
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=38.93 E-value=2e+02 Score=25.24 Aligned_cols=29 Identities=21% Similarity=0.393 Sum_probs=24.5
Q ss_pred ceEEEEEEEcCCCceEEEEEcCCCCCceeeC
Q 009634 103 AQYFGEVSIGTPSQTFTVIFDTGSSNLWVPS 133 (530)
Q Consensus 103 ~~Y~~~i~iGtP~Q~~~v~lDTGSs~~WV~~ 133 (530)
..-.+.+.|.+ ++..+++|+|++..+|..
T Consensus 20 ~vi~g~~~I~~--~~~~vLiDSGAThsFIs~ 48 (135)
T PF08284_consen 20 DVITGTFLINS--IPASVLIDSGATHSFISS 48 (135)
T ss_pred CeEEEEEEecc--EEEEEEEecCCCcEEccH
Confidence 35677888887 999999999999988854
No 60
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=37.93 E-value=20 Score=30.89 Aligned_cols=22 Identities=18% Similarity=0.465 Sum_probs=18.9
Q ss_pred eEEEeCCCC-CccccHHHHHHHH
Q 009634 306 NAIADSGTS-LLAGPTTIITQIN 327 (530)
Q Consensus 306 ~aiiDSGTt-~i~lP~~~~~~l~ 327 (530)
..++|||.+ ++.+|.++++++.
T Consensus 28 ~~LiDTGFtg~lvlp~~vaek~~ 50 (125)
T COG5550 28 DELIDTGFTGYLVLPPQVAEKLG 50 (125)
T ss_pred eeEEecCCceeEEeCHHHHHhcC
Confidence 348999999 9999999888764
No 61
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=37.22 E-value=45 Score=28.98 Aligned_cols=30 Identities=17% Similarity=0.243 Sum_probs=23.4
Q ss_pred eEEECCeeeeecCCCceEEEeCCCCCccccHHHHHHH
Q 009634 290 DVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQI 326 (530)
Q Consensus 290 ~i~v~g~~~~~~~~~~~aiiDSGTt~i~lP~~~~~~l 326 (530)
.+++||..+ .|+||||+..+.++.+.++++
T Consensus 28 ~~~ing~~v-------kA~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 28 NCKINGVPV-------KAFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEEETTEEE-------EEEEETT-SS-EEEHHHHHHT
T ss_pred EEEECCEEE-------EEEEeCCCCccccCHHHHHHc
Confidence 467788766 699999999999999988874
No 62
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=37.15 E-value=76 Score=30.04 Aligned_cols=30 Identities=13% Similarity=0.265 Sum_probs=25.8
Q ss_pred eEEECCeeeeecCCCceEEEeCCCCCccccHHHHHHH
Q 009634 290 DVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQI 326 (530)
Q Consensus 290 ~i~v~g~~~~~~~~~~~aiiDSGTt~i~lP~~~~~~l 326 (530)
...|||+.+ ..++|||.|.+.++++..+.+
T Consensus 109 ~~~VNGk~v-------~fLVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 109 NGRVNGKKV-------DFLVDTGATSVALNEEDARRL 138 (215)
T ss_pred EEEECCEEE-------EEEEecCcceeecCHHHHHHh
Confidence 567888877 479999999999999988876
No 63
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=35.49 E-value=40 Score=27.52 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=20.0
Q ss_pred ceEEEeCCCCCccccHHHHHHHH
Q 009634 305 CNAIADSGTSLLAGPTTIITQIN 327 (530)
Q Consensus 305 ~~aiiDSGTt~i~lP~~~~~~l~ 327 (530)
..+.+|||++...+|...+.++-
T Consensus 11 v~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 11 VKFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred EEEEEecCCEEEeccHHHHhhhc
Confidence 36899999999999999888774
No 64
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=27.52 E-value=54 Score=26.96 Aligned_cols=19 Identities=32% Similarity=0.410 Sum_probs=16.2
Q ss_pred CCceEEEeCCCCCccccHH
Q 009634 303 TGCNAIADSGTSLLAGPTT 321 (530)
Q Consensus 303 ~~~~aiiDSGTt~i~lP~~ 321 (530)
....++||||++.+++|..
T Consensus 10 q~~~~~~DTGSs~~Wv~~~ 28 (109)
T cd05470 10 QTFNVLLDTGSSNLWVPSV 28 (109)
T ss_pred ceEEEEEeCCCCCEEEeCC
Confidence 4567999999999999975
No 65
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=22.99 E-value=2.6e+02 Score=22.80 Aligned_cols=21 Identities=19% Similarity=0.385 Sum_probs=17.6
Q ss_pred ceEEEEEcCCCCCceeeCCCC
Q 009634 116 QTFTVIFDTGSSNLWVPSAKC 136 (530)
Q Consensus 116 Q~~~v~lDTGSs~~WV~~~~C 136 (530)
....+++|||+....+|...|
T Consensus 8 s~~~fLVDTGA~vSviP~~~~ 28 (89)
T cd06094 8 SGLRFLVDTGAAVSVLPASST 28 (89)
T ss_pred CCcEEEEeCCCceEeeccccc
Confidence 456899999999999997665
No 66
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=21.46 E-value=97 Score=25.95 Aligned_cols=66 Identities=15% Similarity=0.237 Sum_probs=39.0
Q ss_pred EEEEEcCCC----ceEEEEEcCCCCCce-eeCCCCCCCcCcCCCCccCCCCCCCceeCCcEEEEEecCce-EEEEEEEEE
Q 009634 107 GEVSIGTPS----QTFTVIFDTGSSNLW-VPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGA-ISGFFSQDN 180 (530)
Q Consensus 107 ~~i~iGtP~----Q~~~v~lDTGSs~~W-V~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~Gs-~~G~~~~Dt 180 (530)
+++.+..|. -++.+++|||.+..- ++...- ..-...+.. .....-++|. ..-....++
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~~~~a-------~~lgl~~~~---------~~~~~tA~G~~~~~~v~~~~ 65 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVPPDIV-------NKLGLPELD---------QRRVYLADGREVLTDVAKAS 65 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecCHHHH-------HHcCCCccc---------CcEEEecCCcEEEEEEEEEE
Confidence 567788773 368899999998654 442211 001111111 1234445664 556677889
Q ss_pred EEECCeEe
Q 009634 181 VKVGDLVV 188 (530)
Q Consensus 181 v~lg~~~~ 188 (530)
+.+++...
T Consensus 66 v~igg~~~ 73 (107)
T TIGR03698 66 IIINGLEI 73 (107)
T ss_pred EEECCEEE
Confidence 99998765
Done!