BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009635
(530 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4E0V|A Chain A, Structure Of L-Amino Acid Oxidase From The B. Jararacussu
Venom
pdb|4E0V|B Chain B, Structure Of L-Amino Acid Oxidase From The B. Jararacussu
Venom
Length = 497
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 36/53 (67%)
Query: 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWY 107
S P +VVI GAG++GLS A LA+AGH+ +LEA + GG++ +++ WY
Sbjct: 44 SNPKRVVIVGAGMSGLSAAYVLANAGHQVTVLEASERAGGQVKTYRNEKEGWY 96
>pdb|1REO|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys Pallas
pdb|1TDK|A Chain A, L-amino Acid Oxidase From Agkistrodon Halys In Complex
With Suicide Substrate L-vinylglycine
pdb|1TDN|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys In Complex
With L-Leucine
pdb|1TDO|A Chain A, L-Amino Acid Oxidae From Agkistrodon Halys In Complex With
L- Phenylalanine
Length = 486
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 35/53 (66%)
Query: 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWY 107
S P VV+ GAG++GLS A L+ AGH+ +LEA + GG++ +++ DWY
Sbjct: 31 SNPKHVVVVGAGMSGLSAAYVLSGAGHQVTVLEASERAGGRVRTYRNDKEDWY 83
>pdb|1F8R|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8S|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|E Chain E, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|F Chain F, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|G Chain G, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|H Chain H, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|2IID|A Chain A, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|B Chain B, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|C Chain C, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|D Chain D, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
Length = 498
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 35/53 (66%)
Query: 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWY 107
S P VVI GAG+AGLS A LA AGH+ +LEA + GG++ +++ + WY
Sbjct: 31 SNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWY 83
>pdb|3KVE|A Chain A, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|B Chain B, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|C Chain C, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|D Chain D, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
Length = 486
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%)
Query: 53 RPSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWY 107
+ S P VV+ GAG++GLS A LA AGHK +LEA + GG++ ++ WY
Sbjct: 29 KTSNPKHVVVVGAGMSGLSAAYVLAGAGHKVTVLEASERAGGRVRTHRNSKEGWY 83
>pdb|2HKO|A Chain A, Crystal Structure Of Lsd1
Length = 664
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 49 RTSPRPSKPL-KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGD 103
R P P+K KV+I G+G++GL+ A+ L G LLEARD +GG++A ++ G+
Sbjct: 98 RIKPLPTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGN 153
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 58/272 (21%), Positives = 102/272 (37%), Gaps = 47/272 (17%)
Query: 275 CLPIVEHIQSLGGEVRLNSRVQKIELNDDG----TVKNFLLTNGNVIDGDAYVFATPVDI 330
C+P+ + G +++LN+ V++++ G V + + DA + P+ +
Sbjct: 402 CVPVA---LAEGLDIKLNTAVRQVQYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGV 458
Query: 331 LKLQ---------LPENWKEMAY----FKRLEKLVGVPVINIHIWFDRKLKNTYDHLLFS 377
LK Q LPE WK A F L K+V + FDR + +L
Sbjct: 459 LKQQPPAVQFVPPLPE-WKTSAVQRMGFGNLNKVV--------LCFDRVFWDPSVNLFGH 509
Query: 378 RSSLLSVYADMSLTCKEYYNPNQSMLELVFAPAEEWI-SCSDSEIIDATMKELAKLFPDE 436
S + ++ L Y P +L LV A + + SD I+ + L +F
Sbjct: 510 VGSTTASRGELFLFWNLYKAP--ILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSS 567
Query: 437 ISADQSKAKIVKYHVVKTPRSVYKTIPNCE---------------PCRPLQRSPVEGFYL 481
+ + ++ R Y + P P P+ +
Sbjct: 568 AVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFF 627
Query: 482 AGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 513
AG++T + Y A++ GA+LSG A I ++
Sbjct: 628 AGEHTIRNYPATVHGALLSGLREAGRIADQFL 659
>pdb|2H94|A Chain A, Crystal Structure And Mechanism Of Human Lysine-Specific
Demethylase-1
Length = 664
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 49 RTSPRPSKPL-KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGD 103
R P P+K KV+I G+G++GL+ A+ L G LLEARD +GG++A ++ G+
Sbjct: 98 RIKPLPTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGN 153
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 58/272 (21%), Positives = 101/272 (37%), Gaps = 47/272 (17%)
Query: 275 CLPIVEHIQSLGGEVRLNSRVQKIELNDDG----TVKNFLLTNGNVIDGDAYVFATPVDI 330
C+P+ + G +++LN+ V+++ G V + + DA + P+ +
Sbjct: 402 CVPVA---LAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGV 458
Query: 331 LKLQ---------LPENWKEMAY----FKRLEKLVGVPVINIHIWFDRKLKNTYDHLLFS 377
LK Q LPE WK A F L K+V + FDR + +L
Sbjct: 459 LKQQPPAVQFVPPLPE-WKTSAVQRMGFGNLNKVV--------LCFDRVFWDPSVNLFGH 509
Query: 378 RSSLLSVYADMSLTCKEYYNPNQSMLELVFAPAEEWI-SCSDSEIIDATMKELAKLFPDE 436
S + ++ L Y P +L LV A + + SD I+ + L +F
Sbjct: 510 VGSTTASRGELFLFWNLYKAP--ILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSS 567
Query: 437 ISADQSKAKIVKYHVVKTPRSVYKTIPNCE---------------PCRPLQRSPVEGFYL 481
+ + ++ R Y + P P P+ +
Sbjct: 568 AVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFF 627
Query: 482 AGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 513
AG++T + Y A++ GA+LSG A I ++
Sbjct: 628 AGEHTIRNYPATVHGALLSGLREAGRIADQFL 659
>pdb|2DW4|A Chain A, Crystal Structure Of Human Lsd1 At 2.3 A Resolution
Length = 660
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 49 RTSPRPSKPL-KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGD 103
R P P+K KV+I G+G++GL+ A+ L G LLEARD +GG++A ++ G+
Sbjct: 98 RIKPLPTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGN 153
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 58/272 (21%), Positives = 101/272 (37%), Gaps = 47/272 (17%)
Query: 275 CLPIVEHIQSLGGEVRLNSRVQKIELNDDG----TVKNFLLTNGNVIDGDAYVFATPVDI 330
C+P+ + G +++LN+ V+++ G V + + DA + P+ +
Sbjct: 402 CVPVA---LAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGV 458
Query: 331 LKLQ---------LPENWKEMAY----FKRLEKLVGVPVINIHIWFDRKLKNTYDHLLFS 377
LK Q LPE WK A F L K+V + FDR + +L
Sbjct: 459 LKQQPPAVQFVPPLPE-WKTSAVQRMGFGNLNKVV--------LCFDRVFWDPSVNLFGH 509
Query: 378 RSSLLSVYADMSLTCKEYYNPNQSMLELVFAPAEEWI-SCSDSEIIDATMKELAKLFPDE 436
S + ++ L Y P +L LV A + + SD I+ + L +F
Sbjct: 510 VGSTTASRGELFLFWNLYKAP--ILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSS 567
Query: 437 ISADQSKAKIVKYHVVKTPRSVYKTIPNCE---------------PCRPLQRSPVEGFYL 481
+ + ++ R Y + P P P+ +
Sbjct: 568 AVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFF 627
Query: 482 AGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 513
AG++T + Y A++ GA+LSG A I ++
Sbjct: 628 AGEHTIRNYPATVHGALLSGLREAGRIADQFL 659
>pdb|2IW5|A Chain A, Structural Basis For Corest-dependent Demethylation Of
Nucleosomes By The Human Lsd1 Histone Demethylase
pdb|2UXN|A Chain A, Structural Basis Of Histone Demethylation By Lsd1 Revealed
By Suicide Inactivation
pdb|2UXX|A Chain A, Human Lsd1 Histone Demethylase-Corest In Complex With An
Fad-Tranylcypromine Adduct
Length = 666
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 49 RTSPRPSKPL-KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGD 103
R P P+K KV+I G+G++GL+ A+ L G LLEARD +GG++A ++ G+
Sbjct: 99 RIKPLPTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGN 154
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 58/272 (21%), Positives = 101/272 (37%), Gaps = 47/272 (17%)
Query: 275 CLPIVEHIQSLGGEVRLNSRVQKIELNDDG----TVKNFLLTNGNVIDGDAYVFATPVDI 330
C+P+ + G +++LN+ V+++ G V + + DA + P+ +
Sbjct: 403 CVPVA---LAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGV 459
Query: 331 LKLQ---------LPENWKEMAY----FKRLEKLVGVPVINIHIWFDRKLKNTYDHLLFS 377
LK Q LPE WK A F L K+V + FDR + +L
Sbjct: 460 LKQQPPAVQFVPPLPE-WKTSAVQRMGFGNLNKVV--------LCFDRVFWDPSVNLFGH 510
Query: 378 RSSLLSVYADMSLTCKEYYNPNQSMLELVFAPAEEWI-SCSDSEIIDATMKELAKLFPDE 436
S + ++ L Y P +L LV A + + SD I+ + L +F
Sbjct: 511 VGSTTASRGELFLFWNLYKAP--ILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSS 568
Query: 437 ISADQSKAKIVKYHVVKTPRSVYKTIPNCE---------------PCRPLQRSPVEGFYL 481
+ + ++ R Y + P P P+ +
Sbjct: 569 AVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFF 628
Query: 482 AGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 513
AG++T + Y A++ GA+LSG A I ++
Sbjct: 629 AGEHTIRNYPATVHGALLSGLREAGRIADQFL 660
>pdb|2V1D|A Chain A, Structural Basis Of Lsd1-Corest Selectivity In Histone H3
Recognition
pdb|2Y48|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A N-
Terminal Snail Peptide
Length = 730
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 49 RTSPRPSKPL-KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGD 103
R P P+K KV+I G+G++GL+ A+ L G LLEARD +GG++A ++ G+
Sbjct: 147 RIKPLPTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGN 202
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 58/272 (21%), Positives = 101/272 (37%), Gaps = 47/272 (17%)
Query: 275 CLPIVEHIQSLGGEVRLNSRVQKIELNDDG----TVKNFLLTNGNVIDGDAYVFATPVDI 330
C+P+ + G +++LN+ V+++ G V + + DA + P+ +
Sbjct: 451 CVPVA---LAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGV 507
Query: 331 LKLQ---------LPENWKEMAY----FKRLEKLVGVPVINIHIWFDRKLKNTYDHLLFS 377
LK Q LPE WK A F L K+V + FDR + +L
Sbjct: 508 LKQQPPAVQFVPPLPE-WKTSAVQRMGFGNLNKVV--------LCFDRVFWDPSVNLFGH 558
Query: 378 RSSLLSVYADMSLTCKEYYNPNQSMLELVFAPAEEWI-SCSDSEIIDATMKELAKLFPDE 436
S + ++ L Y P +L LV A + + SD I+ + L +F
Sbjct: 559 VGSTTASRGELFLFWNLYKAP--ILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSS 616
Query: 437 ISADQSKAKIVKYHVVKTPRSVYKTIPNCE---------------PCRPLQRSPVEGFYL 481
+ + ++ R Y + P P P+ +
Sbjct: 617 AVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFF 676
Query: 482 AGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 513
AG++T + Y A++ GA+LSG A I ++
Sbjct: 677 AGEHTIRNYPATVHGALLSGLREAGRIADQFL 708
>pdb|2EJR|A Chain A, Lsd1-Tranylcypromine Complex
pdb|2Z3Y|A Chain A, Crystal Structure Of Lysine-Specific Demethylase1
pdb|2Z5U|A Chain A, Crystal Structure Of Lysine-Specific Histone Demethylase 1
pdb|3ABT|A Chain A, Crystal Structure Of Lsd1 In Complex With Trans-2-
Pentafluorophenylcyclopropylamine
pdb|3ABU|A Chain A, Crystal Structure Of Lsd1 In Complex With A 2-Pcpa
Derivative, S1201
Length = 662
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 49 RTSPRPSKPL-KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGD 103
R P P+K KV+I G+G++GL+ A+ L G LLEARD +GG++A ++ G+
Sbjct: 98 RIKPLPTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGN 153
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 58/272 (21%), Positives = 101/272 (37%), Gaps = 47/272 (17%)
Query: 275 CLPIVEHIQSLGGEVRLNSRVQKIELNDDG----TVKNFLLTNGNVIDGDAYVFATPVDI 330
C+P+ + G +++LN+ V+++ G V + + DA + P+ +
Sbjct: 402 CVPVA---LAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGV 458
Query: 331 LKLQ---------LPENWKEMAY----FKRLEKLVGVPVINIHIWFDRKLKNTYDHLLFS 377
LK Q LPE WK A F L K+V + FDR + +L
Sbjct: 459 LKQQPPAVQFVPPLPE-WKTSAVQRMGFGNLNKVV--------LCFDRVFWDPSVNLFGH 509
Query: 378 RSSLLSVYADMSLTCKEYYNPNQSMLELVFAPAEEWI-SCSDSEIIDATMKELAKLFPDE 436
S + ++ L Y P +L LV A + + SD I+ + L +F
Sbjct: 510 VGSTTASRGELFLFWNLYKAP--ILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSS 567
Query: 437 ISADQSKAKIVKYHVVKTPRSVYKTIPNCE---------------PCRPLQRSPVEGFYL 481
+ + ++ R Y + P P P+ +
Sbjct: 568 AVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFF 627
Query: 482 AGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 513
AG++T + Y A++ GA+LSG A I ++
Sbjct: 628 AGEHTIRNYPATVHGALLSGLREAGRIADQFL 659
>pdb|2X0L|A Chain A, Crystal Structure Of A Neuro-Specific Splicing Variant Of
Human Histone Lysine Demethylase Lsd1
Length = 734
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 49 RTSPRPSKPL-KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGD 103
R P P+K KV+I G+G++GL+ A+ L G LLEARD +GG++A ++ G+
Sbjct: 147 RIKPLPTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGN 202
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 58/272 (21%), Positives = 101/272 (37%), Gaps = 47/272 (17%)
Query: 275 CLPIVEHIQSLGGEVRLNSRVQKIELNDDG----TVKNFLLTNGNVIDGDAYVFATPVDI 330
C+P+ + G +++LN+ V+++ G V + + DA + P+ +
Sbjct: 455 CVPVA---LAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGV 511
Query: 331 LKLQ---------LPENWKEMAY----FKRLEKLVGVPVINIHIWFDRKLKNTYDHLLFS 377
LK Q LPE WK A F L K+V + FDR + +L
Sbjct: 512 LKQQPPAVQFVPPLPE-WKTSAVQRMGFGNLNKVV--------LCFDRVFWDPSVNLFGH 562
Query: 378 RSSLLSVYADMSLTCKEYYNPNQSMLELVFAPAEEWI-SCSDSEIIDATMKELAKLFPDE 436
S + ++ L Y P +L LV A + + SD I+ + L +F
Sbjct: 563 VGSTTASRGELFLFWNLYKAP--ILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSS 620
Query: 437 ISADQSKAKIVKYHVVKTPRSVYKTIPNCE---------------PCRPLQRSPVEGFYL 481
+ + ++ R Y + P P P+ +
Sbjct: 621 AVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFF 680
Query: 482 AGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 513
AG++T + Y A++ GA+LSG A I ++
Sbjct: 681 AGEHTIRNYPATVHGALLSGLREAGRIADQFL 712
>pdb|2XAF|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine
pdb|2XAG|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (-)-Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAH|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With (+)-
Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAJ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
(-)-Trans- 2-Phenylcyclopropyl-1-Amine
pdb|2XAQ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2584, 13b)
pdb|2XAS|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2580, 14e)
Length = 852
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 49 RTSPRPSKPL-KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGD 103
R P P+K KV+I G+G++GL+ A+ L G LLEARD +GG++A ++ G+
Sbjct: 269 RIKPLPTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGN 324
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 58/272 (21%), Positives = 101/272 (37%), Gaps = 47/272 (17%)
Query: 275 CLPIVEHIQSLGGEVRLNSRVQKIELNDDG----TVKNFLLTNGNVIDGDAYVFATPVDI 330
C+P+ + G +++LN+ V+++ G V + + DA + P+ +
Sbjct: 573 CVPVA---LAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGV 629
Query: 331 LKLQ---------LPENWKEMAY----FKRLEKLVGVPVINIHIWFDRKLKNTYDHLLFS 377
LK Q LPE WK A F L K+V + FDR + +L
Sbjct: 630 LKQQPPAVQFVPPLPE-WKTSAVQRMGFGNLNKVV--------LCFDRVFWDPSVNLFGH 680
Query: 378 RSSLLSVYADMSLTCKEYYNPNQSMLELVFAPAEEWI-SCSDSEIIDATMKELAKLFPDE 436
S + ++ L Y P +L LV A + + SD I+ + L +F
Sbjct: 681 VGSTTASRGELFLFWNLYKAP--ILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSS 738
Query: 437 ISADQSKAKIVKYHVVKTPRSVYKTIPNCE---------------PCRPLQRSPVEGFYL 481
+ + ++ R Y + P P P+ +
Sbjct: 739 AVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFF 798
Query: 482 AGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 513
AG++T + Y A++ GA+LSG A I ++
Sbjct: 799 AGEHTIRNYPATVHGALLSGLREAGRIADQFL 830
>pdb|3RHA|A Chain A, The Crystal Structure Of Oxidoreductase From Arthrobacter
Aurescens
pdb|3RHA|B Chain B, The Crystal Structure Of Oxidoreductase From Arthrobacter
Aurescens
Length = 482
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 104/251 (41%), Gaps = 20/251 (7%)
Query: 60 VVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDG-DGDWYETGLHIFFGAY 118
VVI GAG +GL+ A+ L AG +LEARD +GG+ W D DG E G
Sbjct: 10 VVIVGAGPSGLTAARELKKAGLSVAVLEARDRVGGRT--WTDTIDGAMLEIGGQWVSPDQ 67
Query: 119 PNIQNLFGELGINDRLQWKE-HSMIFAMPNKPGEFSRFDFP--EVLPAPLNGILAILRNN 175
+ L ELG+ ++++ S+ K +++ FP E A ++ ++AIL
Sbjct: 68 TVLMELLDELGLKMYSRYRDGESVYIGADGKRTQYTGDTFPVNETTKAEMDKLVAILD-- 125
Query: 176 EMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALN 235
+ A + P D ++ W+R+ + + + ++ +
Sbjct: 126 ---------ELAAEIGPTEPWAHPKARELDTISFHHWLRQNSNDEEACNNIGLFIAGGM- 175
Query: 236 FINPDEL--SMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNS 293
P ++Q +L+A + + LD + + LG +V LNS
Sbjct: 176 LTKPAHAFSALQAVLMAASAGSFSHLTDEDFILDKRVIGGMQQVSLLQAAELGDDVVLNS 235
Query: 294 RVQKIELNDDG 304
V+ I+ +++G
Sbjct: 236 PVRTIKWDENG 246
>pdb|2BXR|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXR|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXS|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
pdb|2BXS|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
Length = 527
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%)
Query: 60 VVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYP 119
VV+ G G++GLS AK L + G L+LEARD +GG+ ++ D+ + G
Sbjct: 16 VVVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGGRTYTIRNEHVDYVDVGGAYVGPTQN 75
Query: 120 NIQNLFGELGI 130
I L ELGI
Sbjct: 76 RILRLSKELGI 86
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 473 RSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIV 509
R PV + AG T K+ MEGAV +G+ A+ ++
Sbjct: 424 RQPVGRIFFAGTETATKWSGYMEGAVEAGERAAREVL 460
>pdb|2Z5Y|A Chain A, Crystal Structure Of Human Monoamine Oxidase A (G110a)
With Harmine
Length = 513
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%)
Query: 60 VVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYP 119
VV+ G G++GLS AK L + G L+LEARD +GG+ ++ D+ + G
Sbjct: 5 VVVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGGRTYTIRNEHVDYVDVGGAYVGPTQN 64
Query: 120 NIQNLFGELGI 130
I L ELGI
Sbjct: 65 RILRLSKELGI 75
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 473 RSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIV 509
R PV + AG T K+ MEGAV +G+ A+ ++
Sbjct: 413 RQPVGRIFFAGTETATKWSGYMEGAVEAGERAAREVL 449
>pdb|2Z5X|A Chain A, Crystal Structure Of Human Monoamine Oxidase A With
Harmine
Length = 513
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%)
Query: 60 VVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYP 119
VV+ G G++GLS AK L + G L+LEARD +GG+ ++ D+ + G
Sbjct: 5 VVVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGGRTYTIRNEHVDYVDVGGAYVGPTQN 64
Query: 120 NIQNLFGELGI 130
I L ELGI
Sbjct: 65 RILRLSKELGI 75
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 473 RSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIV 509
R PV + AG T K+ MEGAV +G+ A+ ++
Sbjct: 413 RQPVGRIFFAGTETATKWSGYMEGAVEAGERAAREVL 449
>pdb|2VVM|A Chain A, The Structure Of Mao-N-D5, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVM|B Chain B, The Structure Of Mao-N-D5, A Variant Of Monoamine Oxidase
From Aspergillus Niger
Length = 495
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDG-DGDWYETG 110
P V++ G G GL+ + L AG K LLLEARD +GG+ +W DG YE G
Sbjct: 39 PWDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGR--SWSSNIDGYPYEMG 91
>pdb|2VVL|G Chain G, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger
Length = 495
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDG-DGDWYETG 110
P V++ G G GL+ + L AG K LLLEARD +GG+ +W DG YE G
Sbjct: 39 PWDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGR--SWSSNIDGYPYEMG 91
>pdb|2VVL|A Chain A, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|B Chain B, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|C Chain C, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|D Chain D, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|E Chain E, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|F Chain F, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|H Chain H, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger
Length = 495
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDG-DGDWYETG 110
P V++ G G GL+ + L AG K LLLEARD +GG+ +W DG YE G
Sbjct: 39 PWDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGR--SWSSNIDGYPYEMG 91
>pdb|2YG6|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: P15i-A394c Double Mutant
pdb|2YG6|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: P15i-A394c Double Mutant
Length = 453
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDG-DGDWYETGLH 112
P+ V I GAG++GL+ A L AG ++EARD +GG+ W D DG E G
Sbjct: 2 PTLQRDVAIVGAGISGLAAATALRKAGLSVAVIEARDRVGGRT--WTDTIDGAVLEIGGQ 59
Query: 113 IFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRF 155
+ +L ELG+ +++E ++ + GE +R+
Sbjct: 60 WVSPDQTALISLLDELGLKTFERYREGESVYI--SSAGERTRY 100
>pdb|3GF4|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To
Udp-Glucose
pdb|3GF4|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To
Udp-Glucose
pdb|3INR|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Oxidized)
pdb|3INR|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Oxidized)
pdb|3INT|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Reduced)
pdb|3INT|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Reduced)
pdb|3KYB|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To Flavin
Mononucleotide
pdb|3KYB|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To Flavin
Mononucleotide
Length = 390
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/190 (21%), Positives = 83/190 (43%), Gaps = 11/190 (5%)
Query: 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGD--WYETGLHI 113
K K++I GAG +G + LA+ GH+ +++ RD +GG +D + + + G HI
Sbjct: 2 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSETNVMVHVYGPHI 61
Query: 114 FFGAYPNIQNLFGE----LGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIL 169
F + N + + +R++ + +F++P ++F P ++
Sbjct: 62 FHTDNETVWNYINKHAEMMPYVNRVKATVNGQVFSLPINLHTINQFFSKTCSPDEARALI 121
Query: 170 AILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEW-MRKQGVPDRVTTEVFI 228
A + + + P+ F L IG + Y G T+++W M+ +P + + +
Sbjct: 122 A-EKGDSTIADPQ--TFEEQAL-RFIGKELYEAFFKGYTIKQWGMQPSELPASILKRLPV 177
Query: 229 AMSKALNFIN 238
+ N+ N
Sbjct: 178 RFNYDDNYFN 187
>pdb|1WAM|A Chain A, Structure Of Udp-Galactopyranose Mutase From Klebsiella
Pneumoniae With Fadh-
Length = 384
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/190 (21%), Positives = 83/190 (43%), Gaps = 11/190 (5%)
Query: 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGD--WYETGLHI 113
K K++I GAG +G + LA+ GH+ +++ RD +GG +D + + + G HI
Sbjct: 2 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSETNVMVHVYGPHI 61
Query: 114 FFGAYPNIQNLFGE----LGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIL 169
F + N + + +R++ + +F++P ++F P ++
Sbjct: 62 FHTDNETVWNYVNKHAEMMPYVNRVKATVNGQVFSLPINLHTINQFFSKTCSPDEARALI 121
Query: 170 AILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEW-MRKQGVPDRVTTEVFI 228
A + + + P+ F L IG + Y G T+++W M+ +P + + +
Sbjct: 122 A-EKGDSTIADPQ--TFEEEAL-RFIGKELYEAFFKGYTIKQWGMQPSELPASILKRLPV 177
Query: 229 AMSKALNFIN 238
+ N+ N
Sbjct: 178 RFNYDDNYFN 187
>pdb|2BI7|A Chain A, Udp-Galactopyranose Mutase From Klebsiella Pneumoniae
Oxidised Fad
pdb|2BI8|A Chain A, Udp-Galactopyranose Mutase From Klebsiella Pneumoniae With
Reduced Fad
Length = 384
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/190 (21%), Positives = 83/190 (43%), Gaps = 11/190 (5%)
Query: 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGD--WYETGLHI 113
K K++I GAG +G + LA+ GH+ +++ RD +GG +D + + + G HI
Sbjct: 2 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSETNVMVHVYGPHI 61
Query: 114 FFGAYPNIQNLFGE----LGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIL 169
F + N + + +R++ + +F++P ++F P ++
Sbjct: 62 FHTDNETVWNYVNKHAEMMPYVNRVKATVNGQVFSLPINLHTINQFFSKTCSPDEARALI 121
Query: 170 AILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEW-MRKQGVPDRVTTEVFI 228
A + + + P+ F L IG + Y G T+++W M+ +P + + +
Sbjct: 122 A-EKGDSTIADPQ--TFEEEAL-RFIGKELYEAFFKGYTIKQWGMQPSELPASILKRLPV 177
Query: 229 AMSKALNFIN 238
+ N+ N
Sbjct: 178 RFNYDDNYFN 187
>pdb|1O5W|A Chain A, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|B Chain B, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|C Chain C, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|D Chain D, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
Length = 534
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%)
Query: 60 VVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYP 119
VV+ G G++GL+ AK L++ L+LEARD +GG+ ++ W + G
Sbjct: 24 VVVIGGGISGLAAAKLLSEYKINVLVLEARDRVGGRTYTVRNEHVKWVDVGGAYVGPTQN 83
Query: 120 NIQNLFGELGI 130
I L ELGI
Sbjct: 84 RILRLSKELGI 94
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 473 RSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIV 509
R PV Y AG T ++ MEGAV +G+ A+ ++
Sbjct: 432 RQPVGRIYFAGTETATQWSGYMEGAVEAGERAAREVL 468
>pdb|3KA7|A Chain A, Crystal Structure Of An Oxidoreductase From Methanosarcina
Mazei. Northeast Structural Genomics Consortium Target
Id Mar208
Length = 425
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 89/463 (19%), Positives = 177/463 (38%), Gaps = 70/463 (15%)
Query: 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAY 118
K V+ GAGL GL +A L+ AGH+ + E + GG+ + G + GA+
Sbjct: 2 KTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGGRFT-------NLSYKGFQLSSGAF 54
Query: 119 PNIQN--------LFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILA 170
+ N E+ + + E + + +P K G P + G
Sbjct: 55 HXLPNGPGGPLACFLKEVEASVNIVRSEXTTV-RVPLKKGN----------PDYVKGFKD 103
Query: 171 ILRNN--EMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQGVPDRVTTEVFI 228
I N+ +L++ ++ K A+ ++ G ++Q W++ Q V+ E I
Sbjct: 104 ISFNDFPSLLSYKDRXKIALLIV------STRKNRPSGSSLQAWIKSQ-----VSDEWLI 152
Query: 229 AMSKALN----FINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQS 284
+ + + DE+ ++ + + + F PE C I++ +++
Sbjct: 153 KFADSFCGWALSLKSDEVPVEEVFEIIENXYR--------FGGTGIPEGGCKGIIDALET 204
Query: 285 L----GGEVRLNSRVQKIELNDD---GTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPE 337
+ GG++ V KI + + G + + + + +++ + AT V L +
Sbjct: 205 VISANGGKIHTGQEVSKILIENGKAAGIIADDRIHDADLVISNLGHAATAV--LCSEALS 262
Query: 338 NWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTYDHLLFSRSSLLSVYADMSLTCKEYYN 397
+ AYFK + L I I + D L LL + ++ +++ E
Sbjct: 263 KEADAAYFKXVGTLQPSAGIKICLAADEPLVGHTGVLLTPYTRRINGVNEVTQADPELAP 322
Query: 398 PNQSMLELVFAPAEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRS 457
P + + A E + +SE I+ +++L ++FP K + ++++
Sbjct: 323 PGKHLTXCHQYVAPENVKNLESE-IEXGLEDLKEIFP---------GKRYEVLLIQSYHD 372
Query: 458 VYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLS 500
+ P +P G Y+ GD K K +EG L
Sbjct: 373 EWPVNRAASGTDPGNETPFSGLYVVGDGAKGKGGIEVEGVALG 415
>pdb|2YG5|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c Mutant
Length = 453
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDG-DGDWYETGLH 112
P+ V I GAG +GL+ A L AG ++EARD +GG+ W D DG E G
Sbjct: 2 PTLQRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRT--WTDTIDGAVLEIGGQ 59
Query: 113 IFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRF 155
+ +L ELG+ +++E ++ + GE +R+
Sbjct: 60 WVSPDQTALISLLDELGLKTFERYREGESVYI--SSAGERTRY 100
>pdb|2YG7|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c-A396t-Q431g Triple Mutant
pdb|2YG7|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c-A396t-Q431g Triple Mutant
Length = 453
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDG-DGDWYETGLH 112
P+ V I GAG +GL+ A L AG ++EARD +GG+ W D DG E G
Sbjct: 2 PTLQRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRT--WTDTIDGAVLEIGGQ 59
Query: 113 IFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRF 155
+ +L ELG+ +++E ++ + GE +R+
Sbjct: 60 WVSPDQTALISLLDELGLKTFERYREGESVYI--SSAGERTRY 100
>pdb|4ECH|A Chain A, Yeast Polyamine Oxidase Fms1, H67q Mutant
pdb|4ECH|B Chain B, Yeast Polyamine Oxidase Fms1, H67q Mutant
Length = 516
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 54 PSKPLKVVIAGAGLAGLSTAKYLADAG-HKPLLLEARDVLGGKIAAWKDGDGDWYETG 110
P+K KV+I GAG+AGL A L G L+LEARD +GG++ G Y+ G
Sbjct: 6 PAKK-KVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIG 62
>pdb|2YG3|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Enzyme
pdb|2YG3|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Enzyme
pdb|2YG4|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Bound To Putrescine
pdb|2YG4|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Bound To Putrescine
Length = 453
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDG-DGDWYETGLH 112
P+ V I GAG +GL+ A L AG ++EARD +GG+ W D DG E G
Sbjct: 2 PTLQRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRT--WTDTIDGAVLEIGGQ 59
Query: 113 IFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRF 155
+ +L ELG+ +++E ++ + GE +R+
Sbjct: 60 WVSPDQTALISLLDELGLKTFERYREGESVYI--SSAGERTRY 100
>pdb|1YY5|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1YY5|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|C Chain C, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|D Chain D, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
Length = 513
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 54 PSKPLKVVIAGAGLAGLSTAKYLADAG-HKPLLLEARDVLGGKIAAWKDGDGDWYETG 110
P+K KV+I GAG+AGL A L G L+LEARD +GG++ G Y+ G
Sbjct: 6 PAKK-KVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIG 62
>pdb|1Z6L|A Chain A, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|1Z6L|B Chain B, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|3BI2|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI2|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI4|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI4|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI5|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI5|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BNM|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNM|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNU|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3BNU|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3CN8|B Chain B, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CN8|A Chain A, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CND|B Chain B, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CND|A Chain A, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CNP|B Chain B, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNP|A Chain A, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNS|A Chain A, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNS|B Chain B, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNT|B Chain B, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
pdb|3CNT|A Chain A, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
Length = 516
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 54 PSKPLKVVIAGAGLAGLSTAKYLADAG-HKPLLLEARDVLGGKIAAWKDGDGDWYETG 110
P+K KV+I GAG+AGL A L G L+LEARD +GG++ G Y+ G
Sbjct: 6 PAKK-KVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIG 62
>pdb|4GDP|A Chain A, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|B Chain B, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|C Chain C, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|D Chain D, Yeast Polyamine Oxidase Fms1, N195a Mutant
Length = 516
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 54 PSKPLKVVIAGAGLAGLSTAKYLADAG-HKPLLLEARDVLGGKIAAWKDGDGDWYETG 110
P+K KV+I GAG+AGL A L G L+LEARD +GG++ G Y+ G
Sbjct: 6 PAKK-KVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIG 62
>pdb|1RSG|A Chain A, Crystal Structure Of The Polyamine Oxidase Fms1 From Yeast
pdb|1RSG|B Chain B, Crystal Structure Of The Polyamine Oxidase Fms1 From Yeast
Length = 516
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 54 PSKPLKVVIAGAGLAGLSTAKYLADAG-HKPLLLEARDVLGGKIAAWKDGDGDWYETG 110
P+K KV+I GAG+AGL A L G L+LEARD +GG++ G Y+ G
Sbjct: 6 PAKK-KVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIG 62
>pdb|3LOV|A Chain A, Crystal Structure Of Putative Protoporphyrinogen Oxidase
(Yp_001813199.1) From Exiguobacterium Sp. 255-15 At 2.06
A Resolution
Length = 475
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 63/142 (44%), Gaps = 21/142 (14%)
Query: 59 KVVIAGAGLAGLSTAKYLADAGHKPL---LLEARDVLGGKIAAWKDGDGDWYETGLHIFF 115
++VI G G+ GL+ A Y A+ L LLEA + LGGK+A +++ DG E G +
Sbjct: 6 RLVIVGGGITGLAAA-YYAERAFPDLNITLLEAGERLGGKVATYRE-DGFTIERGPDSYV 63
Query: 116 GAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGI------L 169
+ +L +G+ ++L S F + D + P P + L
Sbjct: 64 ARKHILTDLIEAIGLGEKLVRNNTSQAFIL----------DTGGLHPIPKGAVXGIPTDL 113
Query: 170 AILRNNEMLTWPEKVKFAIGLL 191
+ R +LT EK + A LL
Sbjct: 114 DLFRQTTLLTEEEKQEVADLLL 135
>pdb|3KPF|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KPF|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KU9|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3KU9|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3L1R|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
pdb|3L1R|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
Length = 478
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 30/39 (76%), Gaps = 1/39 (2%)
Query: 59 KVVIAGAGLAGLSTAKYLADAGHKPLL-LEARDVLGGKI 96
+V++ GAG++G+S AK L++AG LL LEA D +GG++
Sbjct: 6 RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRM 44
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 7/136 (5%)
Query: 377 SRSSLLSVYADMSLTCKEYYNPNQSMLELVFAPAEEWISCSDSEIIDATMKELAKLFPDE 436
SR V+ + K+Y + N ++ + + SD + M+ L K+FP +
Sbjct: 324 SRRGYYGVWQEFE---KQYPDANVLLVTVTDEESRRIEQQSDEQTKAEIMQVLRKMFPGK 380
Query: 437 ISADQSKAKIVKYHVVKTPRSVYKTIP---NCEPCRPLQRSPVEGFYLAGDYTKQKYLAS 493
D + + ++ + + + P N L R+PV Y G++T + Y
Sbjct: 381 DVPDATDILVPRWWSDRFYKGTFSNWPVGVNRYEYDQL-RAPVGRVYFTGEHTSEHYNGY 439
Query: 494 MEGAVLSGKLCAQAIV 509
+ GA LSG A+ ++
Sbjct: 440 VHGAYLSGIDSAEILI 455
>pdb|1B37|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1H81|A Chain A, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|B Chain B, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|C Chain C, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H82|A Chain A, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|B Chain B, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|C Chain C, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H83|A Chain A, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|B Chain B, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|C Chain C, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H84|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H86|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
Length = 472
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 30/39 (76%), Gaps = 1/39 (2%)
Query: 59 KVVIAGAGLAGLSTAKYLADAGHKPLL-LEARDVLGGKI 96
+V++ GAG++G+S AK L++AG LL LEA D +GG++
Sbjct: 6 RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRM 44
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 7/136 (5%)
Query: 377 SRSSLLSVYADMSLTCKEYYNPNQSMLELVFAPAEEWISCSDSEIIDATMKELAKLFPDE 436
SR V+ + K+Y + N ++ + + SD + M+ L K+FP +
Sbjct: 324 SRRGYYGVWQEFE---KQYPDANVLLVTVTDEESRRIEQQSDEQTKAEIMQVLRKMFPGK 380
Query: 437 ISADQSKAKIVKYHVVKTPRSVYKTIP---NCEPCRPLQRSPVEGFYLAGDYTKQKYLAS 493
D + + ++ + + + P N L R+PV Y G++T + Y
Sbjct: 381 DVPDATDILVPRWWSDRFYKGTFSNWPVGVNRYEYDQL-RAPVGRVYFTGEHTSEHYNGY 439
Query: 494 MEGAVLSGKLCAQAIV 509
+ GA LSG A+ ++
Sbjct: 440 VHGAYLSGIDSAEILI 455
>pdb|3I6D|A Chain A, Crystal Structure Of Ppo From Bacillus Subtilis With Af
pdb|3I6D|B Chain B, Crystal Structure Of Ppo From Bacillus Subtilis With Af
Length = 470
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 88/441 (19%), Positives = 174/441 (39%), Gaps = 69/441 (15%)
Query: 60 VVIAGAGLAGLSTAKYLA---DAGHKPL---LLEARDVLGGKIAAWKDGDGDWYETGLHI 113
VVI G G+ GL+ A Y+ + PL L+EA +GGKI K DG E G
Sbjct: 8 VVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQTVKK-DGYIIERGPDS 66
Query: 114 FFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAI-- 171
F + L +LG+ L + + N+ + P P ++ I
Sbjct: 67 FLERKKSAPQLVKDLGLEHLLVNNATGQSYVLVNRT----------LHPMPKGAVMGIPT 116
Query: 172 ----LRNNEMLTWPEKVKFAIG-LLPAIIGGQAYVEAQDGLTVQEWMRKQGVPDRVTTEV 226
+ + + K + A+ +LPA + +D ++ E+ R++ V D V +
Sbjct: 117 KIAPFVSTGLFSLSGKARAAMDFILPA-------SKTKDDQSLGEFFRRR-VGDEVVENL 168
Query: 227 FIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEH----- 281
+ + + D+LS+ + ++KH S + + P+ +
Sbjct: 169 IEPLLSGIYAGDIDKLSLMSTFPQFYQ-TEQKHRSLILGMKKTRPQGSGQQLTAKKQGQF 227
Query: 282 ------IQSLGGEVRLNSRVQKI-------ELNDDGTVKNFLLTNGNVIDGDAYVFATPV 328
+Q+L E+ ++ K+ +L+ G+ + L NG +D D+ + P
Sbjct: 228 QTLSTGLQTLVEEIEKQLKLTKVYKGTKVTKLSHSGSCYSLELDNGVTLDADSVIVTAPH 287
Query: 329 DILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDR---KLKNTYDHLLFSRSSLLSVY 385
L E+ L+ + V N+ + F ++++ + SR+S ++
Sbjct: 288 KAAAGML----SELPAISHLKNMHSTSVANVALGFPEGSVQMEHEGTGFVISRNSDFAIT 343
Query: 386 ADMSLTCKEYYNP---NQSMLELVFAPA--EEWISCSDSEIIDATMKELAKLF-----PD 435
A + T K++ + +++L A E + SD++II+ +++L K+ P+
Sbjct: 344 A-CTWTNKKWPHAAPEGKTLLRAYVGKAGDESIVDLSDNDIINIVLEDLKKVMNINGEPE 402
Query: 436 EISADQSKAKIVKYHVVKTPR 456
+ + +YHV R
Sbjct: 403 MTCVTRWHESMPQYHVGHKQR 423
>pdb|2E1M|A Chain A, Crystal Structure Of L-Glutamate Oxidase From Streptomyces
Sp. X-119-6
Length = 376
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 10/91 (10%)
Query: 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR-DVLGGKIAAWKDGDGD------- 105
P P +++I GAG+AGL L AGH +LEA + +GG+I + G+
Sbjct: 41 PGPPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKTFHAKKGEPSPFADP 100
Query: 106 --WYETGLHIFFGAYPNIQNLFGELGINDRL 134
+ E G +P L +LG+ RL
Sbjct: 101 AQYAEAGAMRLPSFHPLTLALIDKLGLKRRL 131
>pdb|4DSG|A Chain A, Crystal Structure Of Oxidized Udp-Galactopyranose Mutase
pdb|4DSG|B Chain B, Crystal Structure Of Oxidized Udp-Galactopyranose Mutase
pdb|4DSH|A Chain A, Crystal Structure Of Reduced Udp-Galactopyranose Mutase
pdb|4DSH|B Chain B, Crystal Structure Of Reduced Udp-Galactopyranose Mutase
Length = 484
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 59 KVVIAGAGLAGLSTAKYLADAGHKPL-LLEARDVLGGKIAAWKDGDGDWYETGLHIFFGA 117
K+VI GAG GL A L + G+K L E D GG ++ D +G ++ G H+ F
Sbjct: 11 KIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRSFLDENGFTWDLGGHVIFSH 70
Query: 118 Y 118
Y
Sbjct: 71 Y 71
>pdb|3HDQ|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDY|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HE3|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3MJ4|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
Length = 397
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 15/113 (13%)
Query: 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDW-YETGLHI 113
SK +I GAG AG A+ LA +G + L+++ R +GG D G + G HI
Sbjct: 27 SKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAYDCYDDAGVLIHPYGPHI 86
Query: 114 FFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLN 166
F + N +++F L + +H ++ ++ ++LP P+N
Sbjct: 87 F---HTNSKDVFEYLSRFTEWRPYQHRVLASVDG-----------QLLPIPIN 125
>pdb|3K7M|X Chain X, Crystal Structure Of 6-Hydroxy-L-Nicotine Oxidase From
Arthrobacter Nicotinovorans
pdb|3K7Q|X Chain X, Crystal Structure Of Substrate-Bound
6-Hydroxy-L-Nicotine Oxidase From Arthrobacter
Nicotinovorans
pdb|3NG7|X Chain X, Complex Of Dithionite-Reduced 6-Hydroxy-L-Nicotine
Oxidase With Substrate Bound At Active Site And
Inhibitor At Exit Cavity
pdb|3NGC|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With
Intermediate Methylmyosmine Product Formed During
Catalytic Turnover
pdb|3NH3|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Final
Ketone Product Formed During Catalytic Turnover
pdb|3NHO|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Product
Bound At Active Site
pdb|3NK0|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Inhibitor
Bound At Active Site And Turnover Product At Exit
Cavity
pdb|3NK1|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Serotonin
pdb|3NK2|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Dopamine
pdb|3NN6|X Chain X, Crystal Structure Of Inhibitor-Bound In Active Centre
6-Hydroxy-L- Nicotine Oxidase From Arthrobacter
Nicotinovorans
pdb|3NN0|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With
Nicotinamide
Length = 431
Score = 35.0 bits (79), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 61 VIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGK 95
++ G G +GL A+ L +AG K LLLE + LGG+
Sbjct: 5 IVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGR 39
>pdb|3K7T|A Chain A, Crystal Structure Of Apo-Form 6-Hydroxy-L-Nicotine
Oxidase, Crystal Form P3121
pdb|3K7T|B Chain B, Crystal Structure Of Apo-Form 6-Hydroxy-L-Nicotine
Oxidase, Crystal Form P3121
Length = 425
Score = 35.0 bits (79), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 61 VIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGK 95
++ G G +GL A+ L +AG K LLLE + LGG+
Sbjct: 5 IVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGR 39
>pdb|4DGK|A Chain A, Crystal Structure Of Phytoene Desaturase Crti From Pantoea
Ananatis
Length = 501
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKD 101
KP V+ GAG GL+ A L AG LLLE RD GG+ ++D
Sbjct: 2 KPTTVI--GAGFGGLALAIRLQAAGIPVLLLEQRDKPGGRAYVYED 45
>pdb|2JAE|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In The Unbound State
pdb|2JAE|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In The Unbound State
pdb|2JB1|A Chain A, The L-Amino Acid Oxidase From Rhodococcus Opacus In
Complex With L-Alanine
pdb|2JB1|B Chain B, The L-Amino Acid Oxidase From Rhodococcus Opacus In
Complex With L-Alanine
pdb|2JB3|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With O-Aminobenzoate
pdb|2JB3|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With O-Aminobenzoate
pdb|2JB2|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With L-Phenylalanine.
pdb|2JB2|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With L-Phenylalanine
Length = 489
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 26/43 (60%)
Query: 60 VVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDG 102
VV+ G G AGL +A L AG+K +LEAR GG++ + G
Sbjct: 14 VVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGRVWTARGG 56
>pdb|2IVD|A Chain A, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus With Acifluorfen
pdb|2IVD|B Chain B, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus With Acifluorfen
pdb|2IVE|A Chain A, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus
pdb|2IVE|B Chain B, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus
Length = 478
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 52 PRPSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGL 111
PR + + V + G G++GL+ A +L G +LLE+ LGG + G E G
Sbjct: 12 PRTTG-MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALA-GYLVEQGP 69
Query: 112 HIFFGAYPNIQNLFGELGINDRLQWKE 138
+ F P + L L + R++ +
Sbjct: 70 NSFLDREPATRALAAALNLEGRIRAAD 96
>pdb|3IHG|A Chain A, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
pdb|3IHG|B Chain B, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
pdb|3IHG|C Chain C, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
Length = 535
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89
+ V++ GAGL GLSTA +LA G + L++E R
Sbjct: 6 VDVLVVGAGLGGLSTAMFLARQGVRVLVVERR 37
>pdb|2C75|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C75|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 67 LAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFG 126
++G++ AK L D+G ++LEARD +GG+ ++ + + G I L
Sbjct: 14 ISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLAK 73
Query: 127 ELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEV 160
ELG+ + +I + K F R FP V
Sbjct: 74 ELGLETYKVNEVERLIHHVKGKSYPF-RGPFPPV 106
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 473 RSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 510
R PV+ Y AG T + MEGAV +G+ A+ I+
Sbjct: 415 RQPVDRIYFAGTETATHWSGLMEGAVEAGERAAREILH 452
>pdb|2C73|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C73|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 67 LAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFG 126
++G++ AK L D+G ++LEARD +GG+ ++ + + G I L
Sbjct: 14 ISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLAK 73
Query: 127 ELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEV 160
ELG+ + +I + K F R FP V
Sbjct: 74 ELGLETYKVNEVERLIHHVKGKSYPF-RGPFPPV 106
Score = 32.0 bits (71), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 473 RSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 510
R PV+ Y AG T + MEGAV +G+ A+ I+
Sbjct: 415 RQPVDRIYFAGTETATHWSGFMEGAVEAGERAAREILH 452
>pdb|1GOS|A Chain A, Human Monoamine Oxidase B
pdb|1GOS|B Chain B, Human Monoamine Oxidase B
pdb|1OJ9|A Chain A, Human Monoamine Oxidase B In Complex With
1,4-Diphenyl-2-Butene
pdb|1OJ9|B Chain B, Human Monoamine Oxidase B In Complex With
1,4-Diphenyl-2-Butene
pdb|1OJA|A Chain A, Human Monoamine Oxidase B In Complex With Isatin
pdb|1OJA|B Chain B, Human Monoamine Oxidase B In Complex With Isatin
pdb|1OJC|A Chain A, Human Monoamine Oxidase B In Complex With
N-(2-Aminoethyl)-P-Chlorobenzamide
pdb|1OJC|B Chain B, Human Monoamine Oxidase B In Complex With
N-(2-Aminoethyl)-P-Chlorobenzamide
pdb|1OJD|A Chain A, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|B Chain B, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|C Chain C, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|D Chain D, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|E Chain E, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|F Chain F, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|G Chain G, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|H Chain H, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|I Chain I, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|L Chain L, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1S2Q|A Chain A, Crystal Structure Of Maob In Complex With
N-Propargyl-1(R)-Aminoindan (Rasagiline)
pdb|1S2Q|B Chain B, Crystal Structure Of Maob In Complex With
N-Propargyl-1(R)-Aminoindan (Rasagiline)
pdb|1S2Y|A Chain A, Crystal Structure Of Maob In Complex With
N-propargyl-1(s)- Aminoindan
pdb|1S2Y|B Chain B, Crystal Structure Of Maob In Complex With
N-propargyl-1(s)- Aminoindan
pdb|1S3B|A Chain A, Crystal Structure Of Maob In Complex With N-Methyl-N-
Propargyl-1(R)-Aminoindan
pdb|1S3B|B Chain B, Crystal Structure Of Maob In Complex With N-Methyl-N-
Propargyl-1(R)-Aminoindan
pdb|1S3E|A Chain A, Crystal Structure Of Maob In Complex With 6-Hydroxy-N-
Propargyl-1(R)-Aminoindan
pdb|1S3E|B Chain B, Crystal Structure Of Maob In Complex With 6-Hydroxy-N-
Propargyl-1(R)-Aminoindan
pdb|2BK3|A Chain A, Human Monoamine Oxidase B In Complex With Farnesol
pdb|2BK3|B Chain B, Human Monoamine Oxidase B In Complex With Farnesol
pdb|2BYB|A Chain A, Human Monoamine Oxidase B In Complex With Deprenyl
pdb|2BYB|B Chain B, Human Monoamine Oxidase B In Complex With Deprenyl
pdb|2C64|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C64|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C65|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C65|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C66|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C66|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C67|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C67|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C70|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C70|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2V5Z|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor Safinamide
pdb|2V5Z|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor Safinamide
pdb|2V60|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor
7-(3-Chlorobenzyloxy)-4-Carboxaldehyde-Coumarin
pdb|2V60|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor
7-(3-Chlorobenzyloxy)-4-Carboxaldehyde-Coumarin
pdb|2V61|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor 7-(3-Chlorobenzyloxy)-4-(Methylamino)methyl-
Coumarin
pdb|2V61|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor 7-(3-Chlorobenzyloxy)-4-(Methylamino)methyl-
Coumarin
pdb|2VRL|A Chain A, Structure Of Human Mao B In Complex With Benzylhydrazine
pdb|2VRL|B Chain B, Structure Of Human Mao B In Complex With Benzylhydrazine
pdb|2VRM|A Chain A, Structure Of Human Mao B In Complex With
Phenyethylhydrazine
pdb|2VRM|B Chain B, Structure Of Human Mao B In Complex With
Phenyethylhydrazine
pdb|2VZ2|A Chain A, Human Mao B In Complex With Mofegiline
pdb|2VZ2|B Chain B, Human Mao B In Complex With Mofegiline
pdb|2XCG|A Chain A, Tranylcypromine-Inhibited Human Monoamine Oxidase B In
Complex With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XCG|B Chain B, Tranylcypromine-Inhibited Human Monoamine Oxidase B In
Complex With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFN|A Chain A, Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl) -2-Imidazoline
pdb|2XFN|B Chain B, Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl) -2-Imidazoline
pdb|2XFP|A Chain A, Isatin-Inhibited Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFP|B Chain B, Isatin-Inhibited Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFQ|A Chain A, Rasagiline-Inhibited Human Monoamine Oxidase B In Complex
With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFQ|B Chain B, Rasagiline-Inhibited Human Monoamine Oxidase B In Complex
With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|3PO7|A Chain A, Human Monoamine Oxidase B In Complex With Zonisamide
pdb|3PO7|B Chain B, Human Monoamine Oxidase B In Complex With Zonisamide
pdb|4A79|A Chain A, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Pioglitazone
pdb|4A79|B Chain B, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Pioglitazone
pdb|4A7A|A Chain A, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Rosiglitazone
pdb|4A7A|B Chain B, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Rosiglitazone
Length = 520
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 67 LAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFG 126
++G++ AK L D+G ++LEARD +GG+ ++ + + G I L
Sbjct: 14 ISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLAK 73
Query: 127 ELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEV 160
ELG+ + +I + K F R FP V
Sbjct: 74 ELGLETYKVNEVERLIHHVKGKSYPF-RGPFPPV 106
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 473 RSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 510
R PV+ Y AG T + MEGAV +G+ A+ I+
Sbjct: 415 RQPVDRIYFAGTETATHWSGYMEGAVEAGERAAREILH 452
>pdb|2XFU|A Chain A, Human Monoamine Oxidase B With Tranylcypromine
pdb|2XFU|B Chain B, Human Monoamine Oxidase B With Tranylcypromine
Length = 519
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 67 LAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFG 126
++G++ AK L D+G ++LEARD +GG+ ++ + + G I L
Sbjct: 13 ISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLAK 72
Query: 127 ELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEV 160
ELG+ + +I + K F R FP V
Sbjct: 73 ELGLETYKVNEVERLIHHVKGKSYPF-RGPFPPV 105
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 473 RSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 510
R PV+ Y AG T + MEGAV +G+ A+ I+
Sbjct: 414 RQPVDRIYFAGTETATHWSGYMEGAVEAGERAAREILH 451
>pdb|3ZYX|A Chain A, Crystal Structure Of Human Monoamine Oxidase B In Complex
With Methylene Blue And Bearing The Double Mutation
I199a- Y326a
pdb|3ZYX|B Chain B, Crystal Structure Of Human Monoamine Oxidase B In Complex
With Methylene Blue And Bearing The Double Mutation
I199a- Y326a
Length = 519
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 67 LAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFG 126
++G++ AK L D+G ++LEARD +GG+ ++ + + G I L
Sbjct: 13 ISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLAK 72
Query: 127 ELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEV 160
ELG+ + +I + K F R FP V
Sbjct: 73 ELGLETYKVNEVERLIHHVKGKSYPF-RGPFPPV 105
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 473 RSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 510
R PV+ Y AG T + MEGAV +G+ A+ I+
Sbjct: 414 RQPVDRIYFAGTETATHWSGYMEGAVEAGERAAREILH 451
>pdb|2C72|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C72|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 67 LAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFG 126
++G++ AK L D+G ++LEARD +GG+ ++ + + G I L
Sbjct: 14 ISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLAK 73
Query: 127 ELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEV 160
ELG+ + +I + K F R FP V
Sbjct: 74 ELGLETYKVNEVERLIHHVKGKSYPF-RGPFPPV 106
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 473 RSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 510
R PV+ Y AG T + MEGAV +G+ A+ I+
Sbjct: 415 RQPVDRIYFAGTETATHWSGHMEGAVEAGERAAREILH 452
>pdb|2BK4|A Chain A, Human Monoamine Oxidase B: I199f Mutant In Complex With
Rasagiline
pdb|2BK4|B Chain B, Human Monoamine Oxidase B: I199f Mutant In Complex With
Rasagiline
pdb|2BK5|A Chain A, Human Monoamine Oxidase B: I199f Mutant In Complex With
Isatin
pdb|2BK5|B Chain B, Human Monoamine Oxidase B: I199f Mutant In Complex With
Isatin
Length = 520
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 67 LAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFG 126
++G++ AK L D+G ++LEARD +GG+ ++ + + G I L
Sbjct: 14 ISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLAK 73
Query: 127 ELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEV 160
ELG+ + +I + K F R FP V
Sbjct: 74 ELGLETYKVNEVERLIHHVKGKSYPF-RGPFPPV 106
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 473 RSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 510
R PV+ Y AG T + MEGAV +G+ A+ I+
Sbjct: 415 RQPVDRIYFAGTETATHWSGYMEGAVEAGERAAREILH 452
>pdb|2XFO|A Chain A, Tranylcypromine-Inhibited Human Monoamine Oxidase B
Ile199ala Mutant In Complex With 2-(2-Benzofuranyl)-2-
Imidazoline
pdb|2XFO|B Chain B, Tranylcypromine-Inhibited Human Monoamine Oxidase B
Ile199ala Mutant In Complex With 2-(2-Benzofuranyl)-2-
Imidazoline
Length = 520
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 67 LAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFG 126
++G++ AK L D+G ++LEARD +GG+ ++ + + G I L
Sbjct: 14 ISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLAK 73
Query: 127 ELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEV 160
ELG+ + +I + K F R FP V
Sbjct: 74 ELGLETYKVNEVERLIHHVKGKSYPF-RGPFPPV 106
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 473 RSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 510
R PV+ Y AG T + MEGAV +G+ A+ I+
Sbjct: 415 RQPVDRIYFAGTETATHWSGYMEGAVEAGERAAREILH 452
>pdb|2C76|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C76|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 67 LAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFG 126
++G++ AK L D+G ++LEARD +GG+ ++ + + G I L
Sbjct: 14 ISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLAK 73
Query: 127 ELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEV 160
ELG+ + +I + K F R FP V
Sbjct: 74 ELGLETYKVNEVERLIHHVKGKSYPF-RGPFPPV 106
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 473 RSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 510
R PV+ Y AG T + MEGAV +G+ A+ I+
Sbjct: 415 RQPVDRIYFAGTETATHWSGWMEGAVEAGERAAREILH 452
>pdb|1SEZ|A Chain A, Crystal Structure Of Protoporphyrinogen Ix Oxidase
pdb|1SEZ|B Chain B, Crystal Structure Of Protoporphyrinogen Ix Oxidase
Length = 504
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 53 RPSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLH 112
+ S +V + GAG++GL+ A L G + EA GGK+ + DG ++ G +
Sbjct: 9 KHSSAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQ-DGLIWDEGAN 67
Query: 113 IFFGAYPNIQNLFGELGINDRLQW 136
+ ++ L LG+ ++ Q+
Sbjct: 68 TXTESEGDVTFLIDSLGLREKQQF 91
>pdb|1PS9|A Chain A, The Crystal Structure And Reaction Mechanism Of E. Coli
2,4- Dienoyl Coa Reductase
Length = 671
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGK--IAAWKDGDGDWYET 109
+ + GAG AGL+ A A GH+ L +A +GG+ IA G ++YET
Sbjct: 375 NLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYET 427
>pdb|1KDG|A Chain A, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
pdb|1KDG|B Chain B, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
Length = 546
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLE-----ARDVLGGKIAAWKDGDG 104
+ P +I GAG G+ A L++AG K LLLE + G +A W G
Sbjct: 5 ATPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPSTKQTGGTYVAPWATSSG 59
>pdb|3DME|A Chain A, Crystal Structure Of Conserved Exported Protein From
Bordetella Pertussis. Northeast Structural Genomics
Target Ber141
pdb|3DME|B Chain B, Crystal Structure Of Conserved Exported Protein From
Bordetella Pertussis. Northeast Structural Genomics
Target Ber141
Length = 369
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLG 93
S + ++ GAG+ GL+ A+ LA GH+ L+ EA + +G
Sbjct: 2 STDIDCIVIGAGVVGLAIARALAAGGHEVLVAEAAEGIG 40
>pdb|1NAA|A Chain A, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
With Cellobionolactam
pdb|1NAA|B Chain B, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
With Cellobionolactam
Length = 541
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLE-----ARDVLGGKIAAWKDGDG 104
P +I GAG G+ A L++AG K LLLE + G +A W G
Sbjct: 2 PYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPSTKQTGGTYVAPWATSSG 54
>pdb|3NKS|A Chain A, Structure Of Human Protoporphyrinogen Ix Oxidase
Length = 477
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 60 VVIAGAGLAGLSTAKYLADAGHKP--LLLEARDVLGGKIAAWKDGDGDWYETG 110
VV+ G G++GL+ + +L+ A P +L+E+ + LGG I + + +G +E G
Sbjct: 5 VVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRSVRGPNGAIFELG 57
>pdb|3K30|A Chain A, Histamine Dehydrogenase From Nocardiodes Simplex
pdb|3K30|B Chain B, Histamine Dehydrogenase From Nocardiodes Simplex
Length = 690
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKI 96
+V++ GAG +GL A+ L G+ +L EA LGG++
Sbjct: 393 RVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRV 430
>pdb|1I8T|A Chain A, Strcuture Of Udp-Galactopyranose Mutase From E.Coli
pdb|1I8T|B Chain B, Strcuture Of Udp-Galactopyranose Mutase From E.Coli
Length = 367
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 66/166 (39%), Gaps = 37/166 (22%)
Query: 61 VIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDG-DWYETGLHIFFGAYP 119
+I G+GL G A L K L++E R+ +GG A +D +G ++ G HIF
Sbjct: 5 IIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGN-AYTEDCEGIQIHKYGAHIFH---- 59
Query: 120 NIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLT 179
ND+ W N EF+RF N LAI + +++
Sbjct: 60 ----------TNDKYIWD-------YVNDLVEFNRF---------TNSPLAIYK-DKLFN 92
Query: 180 WPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQGVPDRVTTE 225
P F + + G + EAQ+ + Q+ VP+ + +
Sbjct: 93 LP----FNMNTFHQMWGVKDPQEAQNIINAQKKKYGDKVPENLEEQ 134
>pdb|3C96|A Chain A, Crystal Structure Of The Flavin-Containing Monooxygenase
Phzs From Pseudomonas Aeruginosa. Northeast Structural
Genomics Consortium Target Par240
Length = 410
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 55 SKPLKVVIAGAGLAGLSTAKYLADAG-HKPLLLEA 88
S+P+ ++IAGAG+ GLS A L AG K LLE+
Sbjct: 2 SEPIDILIAGAGIGGLSCALALHQAGIGKVTLLES 36
>pdb|2RGJ|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase
Phzs
Length = 402
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 55 SKPLKVVIAGAGLAGLSTAKYLADAG-HKPLLLEA 88
S+P+ ++IAGAG+ GLS A L AG K LLE+
Sbjct: 2 SEPIDILIAGAGIGGLSCALALHQAGIGKVTLLES 36
>pdb|1ZOV|A Chain A, Crystal Structure Of Monomeric Sarcosine Oxidase From
Bacillus Sp. Ns- 129
pdb|1ZOV|B Chain B, Crystal Structure Of Monomeric Sarcosine Oxidase From
Bacillus Sp. Ns- 129
Length = 386
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90
S V++ GAG G++ YLA G K LL+++ D
Sbjct: 1 STHFDVIVVGAGSMGMAAGYYLAKQGVKTLLVDSFD 36
>pdb|2HAE|A Chain A, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
pdb|2HAE|B Chain B, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
pdb|2HAE|C Chain C, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
pdb|2HAE|D Chain D, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
Length = 386
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 31 DIDNTSNFLEAAYLSSSFRTSPRPSKPLKVVIAGAGLAGLSTAKYLADAGHK 82
D T+ + AA+L++ + + + + +KVV+ G G AG + K+L D G K
Sbjct: 157 DQQGTAVVVSAAFLNA-LKLTEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVK 207
>pdb|3NLC|A Chain A, Crystal Structure Of The Vp0956 Protein From Vibrio
Parahaemolyticus. Northeast Structural Genomics
Consortium Target Vpr147
Length = 549
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 282 IQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFA 325
I LGGE+R ++RV + +DG + L+NG I V A
Sbjct: 230 IIELGGEIRFSTRVDDLHX-EDGQITGVTLSNGEEIKSRHVVLA 272
>pdb|1VL6|A Chain A, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
pdb|1VL6|B Chain B, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
pdb|1VL6|C Chain C, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
pdb|1VL6|D Chain D, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
Length = 388
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 31 DIDNTSNFLEAAYLSSSFRTSPRPSKPLKVVIAGAGLAGLSTAKYLADAGHK 82
D T+ + AA+L++ + + + + +KVV+ G G AG + K+L D G K
Sbjct: 167 DQQGTAVVVSAAFLNA-LKLTEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVK 217
>pdb|3UOV|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOV|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOX|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOX|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOY|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp
(Form 1)
pdb|3UOY|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp
(Form 1)
pdb|3UOZ|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp
(Form 2)
pdb|3UOZ|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp
(Form 2)
pdb|3UP4|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp
(Form 3)
pdb|3UP4|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp
(Form 3)
pdb|3UP5|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp
(Form 4)
pdb|3UP5|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp
(Form 4)
Length = 545
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGG 94
S L V+ GAG+ G+ A + AG K L +EA + +GG
Sbjct: 7 SPALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGG 46
>pdb|3KKJ|A Chain A, X-Ray Structure Of P. Syringae Q888a4 Oxidoreductase At
Resolution 2.5a, Northeast Structural Genomics
Consortium Target Psr10
pdb|3KKJ|B Chain B, X-Ray Structure Of P. Syringae Q888a4 Oxidoreductase At
Resolution 2.5a, Northeast Structural Genomics
Consortium Target Psr10
Length = 336
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLE 87
+ + I G G+AGLS A+ L AGH+ L +
Sbjct: 3 VPIAIIGTGIAGLSAAQALTAAGHQVHLFD 32
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,598,038
Number of Sequences: 62578
Number of extensions: 731650
Number of successful extensions: 2110
Number of sequences better than 100.0: 121
Number of HSP's better than 100.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1948
Number of HSP's gapped (non-prelim): 182
length of query: 530
length of database: 14,973,337
effective HSP length: 103
effective length of query: 427
effective length of database: 8,527,803
effective search space: 3641371881
effective search space used: 3641371881
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)