Query 009635
Match_columns 530
No_of_seqs 264 out of 2865
Neff 10.3
Searched_HMMs 46136
Date Thu Mar 28 15:30:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009635.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009635hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02612 phytoene desaturase 100.0 2.7E-59 5.9E-64 482.4 50.8 513 16-528 52-564 (567)
2 TIGR02731 phytoene_desat phyto 100.0 2.3E-48 5.1E-53 396.3 45.3 448 59-509 1-453 (453)
3 TIGR02732 zeta_caro_desat caro 100.0 6.4E-44 1.4E-48 361.7 44.3 443 59-509 1-474 (474)
4 PLN02487 zeta-carotene desatur 100.0 3.5E-43 7.5E-48 357.5 46.4 457 56-520 74-561 (569)
5 PRK07233 hypothetical protein; 100.0 9.5E-39 2E-43 325.6 40.7 424 59-513 1-432 (434)
6 COG3349 Uncharacterized conser 100.0 4E-39 8.6E-44 311.2 28.0 447 58-513 1-464 (485)
7 PRK12416 protoporphyrinogen ox 100.0 9.7E-38 2.1E-42 319.2 35.2 421 58-512 2-461 (463)
8 PLN02268 probable polyamine ox 100.0 8.2E-38 1.8E-42 317.4 28.7 413 58-512 1-434 (435)
9 TIGR00562 proto_IX_ox protopor 100.0 9.2E-37 2E-41 312.7 35.8 419 57-513 2-461 (462)
10 PLN02576 protoporphyrinogen ox 100.0 8.7E-37 1.9E-41 315.2 33.2 431 54-517 9-492 (496)
11 PRK11883 protoporphyrinogen ox 100.0 2.1E-36 4.5E-41 309.7 35.0 417 58-510 1-450 (451)
12 COG1231 Monoamine oxidase [Ami 100.0 7E-37 1.5E-41 289.7 27.2 427 55-514 5-449 (450)
13 TIGR03467 HpnE squalene-associ 100.0 2.1E-35 4.6E-40 299.7 39.9 414 71-509 1-418 (419)
14 COG1232 HemY Protoporphyrinoge 100.0 8.9E-36 1.9E-40 290.2 31.0 409 58-509 1-443 (444)
15 PRK07208 hypothetical protein; 100.0 7.5E-35 1.6E-39 299.4 37.4 424 56-511 3-460 (479)
16 PLN02676 polyamine oxidase 100.0 1.3E-35 2.8E-40 301.0 31.0 422 54-514 23-475 (487)
17 KOG0029 Amine oxidase [Seconda 100.0 8E-36 1.7E-40 298.2 28.7 439 53-514 11-461 (501)
18 PLN02529 lysine-specific histo 100.0 1.1E-34 2.4E-39 300.8 33.5 421 55-516 158-602 (738)
19 PLN02568 polyamine oxidase 100.0 2.1E-34 4.5E-39 293.8 33.0 438 56-513 4-536 (539)
20 TIGR02733 desat_CrtD C-3',4' d 100.0 3.7E-33 8E-38 287.2 38.6 433 57-510 1-490 (492)
21 PLN03000 amine oxidase 100.0 3.7E-34 8.1E-39 297.0 30.3 421 55-518 182-629 (881)
22 PLN02328 lysine-specific histo 100.0 2.3E-33 5.1E-38 291.8 33.1 418 55-517 236-684 (808)
23 TIGR02734 crtI_fam phytoene de 100.0 4E-33 8.7E-38 287.9 34.5 429 60-516 1-496 (502)
24 KOG0685 Flavin-containing amin 100.0 1.7E-33 3.6E-38 266.1 25.7 427 54-517 18-496 (498)
25 PLN02976 amine oxidase 100.0 9.8E-33 2.1E-37 293.1 32.2 420 56-514 692-1188(1713)
26 TIGR02730 carot_isom carotene 100.0 1E-31 2.2E-36 276.0 38.3 433 58-512 1-492 (493)
27 PF01593 Amino_oxidase: Flavin 100.0 2.1E-33 4.5E-38 287.4 14.1 429 67-509 1-450 (450)
28 KOG1276 Protoporphyrinogen oxi 100.0 4.6E-29 1E-33 231.9 24.8 428 54-509 8-490 (491)
29 COG1233 Phytoene dehydrogenase 100.0 2.1E-26 4.5E-31 234.4 28.6 421 56-510 2-481 (487)
30 COG2907 Predicted NAD/FAD-bind 99.9 8.2E-26 1.8E-30 204.5 22.0 284 56-361 7-302 (447)
31 KOG4254 Phytoene desaturase [C 99.9 6.7E-24 1.4E-28 198.5 28.7 251 259-517 252-551 (561)
32 COG3380 Predicted NAD/FAD-depe 99.9 1E-25 2.2E-30 197.4 13.3 324 58-512 2-331 (331)
33 PRK13977 myosin-cross-reactive 99.9 1.7E-18 3.6E-23 173.4 32.8 259 54-334 19-297 (576)
34 PTZ00363 rab-GDP dissociation 99.8 2.8E-17 6.1E-22 163.5 25.1 258 55-327 2-287 (443)
35 TIGR03329 Phn_aa_oxid putative 99.8 7E-18 1.5E-22 171.9 18.6 61 271-336 182-242 (460)
36 COG2081 Predicted flavoprotein 99.7 5.1E-17 1.1E-21 152.5 14.2 168 56-332 2-169 (408)
37 TIGR01373 soxB sarcosine oxida 99.7 3.7E-16 8.1E-21 157.5 19.5 59 271-330 182-240 (407)
38 PF01266 DAO: FAD dependent ox 99.7 7.7E-17 1.7E-21 160.0 10.6 62 271-335 146-207 (358)
39 PRK00711 D-amino acid dehydrog 99.7 1.4E-15 3E-20 154.1 19.1 58 271-330 200-257 (416)
40 TIGR00031 UDP-GALP_mutase UDP- 99.7 1.9E-14 4.1E-19 139.9 25.0 241 57-333 1-250 (377)
41 TIGR01377 soxA_mon sarcosine o 99.7 4.8E-15 1E-19 148.3 19.7 57 271-330 144-200 (380)
42 PF03486 HI0933_like: HI0933-l 99.7 2.6E-15 5.7E-20 147.9 17.3 59 271-330 108-166 (409)
43 KOG2820 FAD-dependent oxidored 99.7 4.3E-15 9.3E-20 135.1 17.1 66 271-337 152-218 (399)
44 PRK12409 D-amino acid dehydrog 99.6 1.4E-14 3.1E-19 146.1 21.3 58 271-330 196-258 (410)
45 PRK11259 solA N-methyltryptoph 99.6 1.3E-14 2.9E-19 144.9 20.3 62 271-336 148-209 (376)
46 PRK11101 glpA sn-glycerol-3-ph 99.6 9.4E-13 2E-17 136.5 27.9 59 271-330 148-211 (546)
47 COG0665 DadA Glycine/D-amino a 99.6 1.4E-12 3E-17 131.0 26.6 57 271-330 155-212 (387)
48 PF13450 NAD_binding_8: NAD(P) 99.6 5E-15 1.1E-19 106.6 6.0 66 62-128 1-68 (68)
49 COG0579 Predicted dehydrogenas 99.5 5.9E-14 1.3E-18 136.7 13.3 95 271-376 152-249 (429)
50 PRK01747 mnmC bifunctional tRN 99.5 5.7E-13 1.2E-17 141.9 20.0 61 271-335 407-467 (662)
51 PRK10157 putative oxidoreducta 99.5 1.2E-12 2.6E-17 132.0 20.2 56 273-330 109-164 (428)
52 PRK10015 oxidoreductase; Provi 99.5 1E-11 2.2E-16 125.1 26.5 56 273-330 109-164 (429)
53 TIGR03364 HpnW_proposed FAD de 99.5 2.3E-14 4.9E-19 142.4 7.2 59 271-337 144-203 (365)
54 COG0578 GlpA Glycerol-3-phosph 99.5 7.4E-12 1.6E-16 124.6 23.4 103 263-374 154-262 (532)
55 PF06100 Strep_67kDa_ant: Stre 99.5 3.2E-11 6.8E-16 117.6 27.1 250 57-329 2-273 (500)
56 COG0644 FixC Dehydrogenases (f 99.5 5.1E-11 1.1E-15 119.2 28.8 63 272-335 95-158 (396)
57 PLN02464 glycerol-3-phosphate 99.5 2.3E-11 5.1E-16 127.6 26.6 60 271-330 231-296 (627)
58 PTZ00383 malate:quinone oxidor 99.5 2.2E-13 4.8E-18 137.8 10.8 59 271-331 210-274 (497)
59 PRK12266 glpD glycerol-3-phosp 99.5 3.4E-11 7.3E-16 124.0 26.8 58 271-330 154-216 (508)
60 PRK13369 glycerol-3-phosphate 99.4 2.8E-11 6.1E-16 124.7 24.8 58 271-330 154-215 (502)
61 PRK11728 hydroxyglutarate oxid 99.4 2.2E-13 4.7E-18 136.6 9.0 57 271-330 148-204 (393)
62 PRK08773 2-octaprenyl-3-methyl 99.4 4E-11 8.8E-16 120.3 23.7 57 272-330 113-169 (392)
63 PF00996 GDI: GDP dissociation 99.4 4.8E-11 1E-15 117.5 21.9 255 55-329 2-287 (438)
64 COG1635 THI4 Ribulose 1,5-bisp 99.4 6.4E-12 1.4E-16 107.9 12.7 42 56-97 29-70 (262)
65 PRK07045 putative monooxygenas 99.4 1.6E-10 3.5E-15 115.8 25.1 61 273-333 107-169 (388)
66 KOG2844 Dimethylglycine dehydr 99.4 1.8E-12 4E-17 127.9 10.3 89 237-330 155-243 (856)
67 PLN02463 lycopene beta cyclase 99.4 5.3E-10 1.1E-14 112.3 27.0 56 272-330 114-169 (447)
68 PRK07364 2-octaprenyl-6-methox 99.4 2.4E-10 5.1E-15 115.8 24.9 38 55-92 16-53 (415)
69 PRK07121 hypothetical protein; 99.4 3.8E-11 8.2E-16 123.7 19.0 60 271-330 176-239 (492)
70 PRK06184 hypothetical protein; 99.4 1.4E-10 3E-15 120.1 23.3 61 274-336 111-175 (502)
71 TIGR01988 Ubi-OHases Ubiquinon 99.3 1.8E-10 4E-15 115.5 22.9 57 272-330 106-163 (385)
72 PRK05714 2-octaprenyl-3-methyl 99.3 3.4E-10 7.3E-15 114.2 24.8 63 273-337 113-176 (405)
73 PRK04176 ribulose-1,5-biphosph 99.3 1.2E-11 2.5E-16 115.1 13.1 59 272-330 104-173 (257)
74 TIGR01984 UbiH 2-polyprenyl-6- 99.3 5.2E-10 1.1E-14 112.0 25.2 64 271-336 104-169 (382)
75 COG0562 Glf UDP-galactopyranos 99.3 7.9E-12 1.7E-16 113.5 10.1 241 57-334 1-245 (374)
76 TIGR00292 thiazole biosynthesi 99.3 2.9E-11 6.2E-16 112.0 14.1 41 56-96 20-60 (254)
77 PRK07190 hypothetical protein; 99.3 6.4E-10 1.4E-14 113.7 25.3 59 276-336 113-172 (487)
78 PRK06847 hypothetical protein; 99.3 2.7E-10 5.8E-15 113.8 22.1 56 273-330 108-163 (375)
79 PRK07494 2-octaprenyl-6-methox 99.3 1.3E-10 2.8E-15 116.5 19.1 62 272-335 111-173 (388)
80 PRK09126 hypothetical protein; 99.3 2.3E-10 4.9E-15 115.0 20.8 59 275-335 113-173 (392)
81 PLN00093 geranylgeranyl diphos 99.3 3E-09 6.5E-14 107.5 28.7 38 53-90 35-72 (450)
82 COG0654 UbiH 2-polyprenyl-6-me 99.3 5E-10 1.1E-14 111.9 22.9 63 272-336 104-169 (387)
83 PRK05257 malate:quinone oxidor 99.3 9.7E-12 2.1E-16 126.5 10.7 59 271-330 182-246 (494)
84 TIGR01320 mal_quin_oxido malat 99.3 4.7E-12 1E-16 128.8 8.5 59 271-330 177-240 (483)
85 PRK08020 ubiF 2-octaprenyl-3-m 99.3 1.6E-09 3.4E-14 108.9 26.4 61 273-335 113-175 (391)
86 TIGR02032 GG-red-SF geranylger 99.3 1.3E-09 2.8E-14 105.0 24.9 57 272-330 91-148 (295)
87 PRK07608 ubiquinone biosynthes 99.3 8.4E-10 1.8E-14 110.8 24.4 61 272-335 111-173 (388)
88 PRK08243 4-hydroxybenzoate 3-m 99.3 2E-09 4.3E-14 108.0 26.9 61 57-133 2-64 (392)
89 PRK08244 hypothetical protein; 99.3 7.3E-10 1.6E-14 114.5 24.4 62 274-335 102-165 (493)
90 PRK06481 fumarate reductase fl 99.3 1.3E-10 2.9E-15 119.7 18.3 58 272-330 190-251 (506)
91 PF01494 FAD_binding_3: FAD bi 99.3 1.4E-10 3.1E-15 114.9 17.7 65 273-337 112-180 (356)
92 PLN02697 lycopene epsilon cycl 99.3 5.4E-09 1.2E-13 106.7 28.7 57 272-330 192-248 (529)
93 PRK07333 2-octaprenyl-6-methox 99.3 7E-10 1.5E-14 111.9 22.2 62 272-335 111-173 (403)
94 TIGR02023 BchP-ChlP geranylger 99.3 2.1E-09 4.6E-14 107.5 25.4 32 58-89 1-32 (388)
95 TIGR01813 flavo_cyto_c flavocy 99.3 4.9E-11 1.1E-15 121.4 13.3 59 272-330 130-192 (439)
96 PRK06183 mhpA 3-(3-hydroxyphen 99.3 3.4E-09 7.4E-14 110.6 27.2 63 55-133 8-70 (538)
97 PRK08274 tricarballylate dehyd 99.3 7.5E-11 1.6E-15 121.0 14.4 58 271-329 130-191 (466)
98 PF01946 Thi4: Thi4 family; PD 99.3 3.5E-11 7.6E-16 104.3 9.8 42 56-97 16-57 (230)
99 TIGR01790 carotene-cycl lycope 99.3 6.7E-09 1.5E-13 104.2 28.0 57 272-330 85-141 (388)
100 PRK06834 hypothetical protein; 99.2 1.6E-09 3.6E-14 110.9 23.4 60 274-335 102-162 (488)
101 PRK08850 2-octaprenyl-6-methox 99.2 3E-09 6.5E-14 107.2 24.8 61 274-336 113-175 (405)
102 PRK07588 hypothetical protein; 99.2 2.6E-09 5.7E-14 107.1 24.3 54 274-330 105-158 (391)
103 PRK08013 oxidoreductase; Provi 99.2 3.9E-09 8.5E-14 106.1 25.4 62 273-336 112-175 (400)
104 PRK06185 hypothetical protein; 99.2 9.1E-09 2E-13 103.9 28.2 63 273-336 109-176 (407)
105 TIGR02028 ChlP geranylgeranyl 99.2 4E-09 8.8E-14 105.5 24.6 36 58-93 1-36 (398)
106 PRK08849 2-octaprenyl-3-methyl 99.2 5E-09 1.1E-13 104.7 24.8 60 274-335 112-173 (384)
107 PRK08132 FAD-dependent oxidore 99.2 1.4E-08 3.1E-13 106.2 28.8 64 54-133 20-83 (547)
108 PRK13339 malate:quinone oxidor 99.2 2E-10 4.3E-15 116.1 13.9 59 271-330 183-247 (497)
109 PRK06126 hypothetical protein; 99.2 4.9E-09 1.1E-13 109.8 25.0 63 55-133 5-67 (545)
110 PRK05732 2-octaprenyl-6-methox 99.2 1.1E-08 2.3E-13 103.1 25.1 53 276-330 116-169 (395)
111 PRK12845 3-ketosteroid-delta-1 99.2 1.3E-09 2.8E-14 113.1 18.5 58 272-330 217-278 (564)
112 PRK06617 2-octaprenyl-6-methox 99.2 1.5E-08 3.2E-13 100.9 25.3 62 272-336 104-167 (374)
113 PF00890 FAD_binding_2: FAD bi 99.2 1E-09 2.2E-14 111.2 17.1 58 272-330 141-203 (417)
114 PRK11445 putative oxidoreducta 99.2 1.9E-08 4E-13 99.2 25.5 62 57-131 1-62 (351)
115 TIGR02352 thiamin_ThiO glycine 99.2 5.3E-10 1.2E-14 109.9 14.3 198 271-510 136-335 (337)
116 PRK07395 L-aspartate oxidase; 99.2 6.1E-10 1.3E-14 115.4 15.2 58 272-329 134-196 (553)
117 PRK07573 sdhA succinate dehydr 99.2 1.1E-09 2.4E-14 115.3 17.3 54 276-330 174-232 (640)
118 PRK06175 L-aspartate oxidase; 99.2 6.9E-10 1.5E-14 111.9 15.1 57 272-329 128-188 (433)
119 PLN02985 squalene monooxygenas 99.1 3.5E-08 7.5E-13 101.5 26.9 65 53-133 39-103 (514)
120 PRK07804 L-aspartate oxidase; 99.1 1.8E-09 3.8E-14 112.2 17.5 59 272-330 144-210 (541)
121 KOG2853 Possible oxidoreductas 99.1 5.2E-09 1.1E-13 95.9 18.1 37 55-91 84-124 (509)
122 PRK12839 hypothetical protein; 99.1 2.6E-09 5.7E-14 111.2 18.6 60 271-330 213-276 (572)
123 PF13738 Pyr_redox_3: Pyridine 99.1 1.9E-10 4E-15 104.3 8.8 51 278-330 88-138 (203)
124 PRK06134 putative FAD-binding 99.1 3E-09 6.4E-14 111.4 18.8 59 271-330 216-278 (581)
125 PLN02661 Putative thiazole syn 99.1 2E-09 4.4E-14 102.3 15.8 42 55-96 90-132 (357)
126 PRK06996 hypothetical protein; 99.1 2.1E-08 4.7E-13 100.7 24.2 63 272-336 115-182 (398)
127 TIGR00275 flavoprotein, HI0933 99.1 4.5E-10 9.7E-15 112.2 11.9 56 272-330 105-160 (400)
128 PRK09078 sdhA succinate dehydr 99.1 9.4E-10 2E-14 115.4 14.4 59 272-330 149-212 (598)
129 PTZ00139 Succinate dehydrogena 99.1 1E-09 2.2E-14 115.3 14.6 59 272-330 166-229 (617)
130 TIGR01989 COQ6 Ubiquinone bios 99.1 4.2E-08 9.1E-13 99.7 26.0 64 273-336 118-190 (437)
131 PRK08294 phenol 2-monooxygenas 99.1 3.7E-08 7.9E-13 104.0 25.9 62 54-133 29-93 (634)
132 PRK08958 sdhA succinate dehydr 99.1 9.7E-10 2.1E-14 114.9 13.9 59 272-330 143-206 (588)
133 PRK12835 3-ketosteroid-delta-1 99.1 4.4E-09 9.5E-14 109.9 18.7 59 272-330 213-275 (584)
134 PRK06452 sdhA succinate dehydr 99.1 1.3E-09 2.8E-14 113.6 14.8 58 272-330 136-198 (566)
135 PRK07057 sdhA succinate dehydr 99.1 1.9E-09 4.1E-14 112.9 15.5 59 272-330 148-211 (591)
136 TIGR02360 pbenz_hydroxyl 4-hyd 99.1 5.2E-08 1.1E-12 97.4 25.3 60 57-132 2-63 (390)
137 TIGR01812 sdhA_frdA_Gneg succi 99.1 3.1E-09 6.7E-14 111.5 16.9 58 272-330 129-191 (566)
138 PRK08163 salicylate hydroxylas 99.1 2.7E-09 5.9E-14 107.4 15.8 57 272-330 109-166 (396)
139 PRK06263 sdhA succinate dehydr 99.1 3.2E-09 7E-14 110.5 16.7 59 272-330 134-197 (543)
140 PRK12844 3-ketosteroid-delta-1 99.1 4.8E-09 1E-13 109.2 17.8 58 272-330 208-269 (557)
141 PLN00128 Succinate dehydrogena 99.1 1.5E-09 3.3E-14 113.9 14.2 59 272-330 187-250 (635)
142 TIGR00551 nadB L-aspartate oxi 99.1 3E-09 6.5E-14 109.4 16.1 58 272-330 128-189 (488)
143 PRK05868 hypothetical protein; 99.1 2.4E-08 5.3E-13 99.1 21.9 50 284-335 116-166 (372)
144 PLN02815 L-aspartate oxidase 99.1 2.5E-09 5.4E-14 111.3 15.0 59 272-330 155-222 (594)
145 PLN02172 flavin-containing mon 99.1 1.3E-09 2.9E-14 110.1 12.5 44 55-98 8-51 (461)
146 PRK05192 tRNA uridine 5-carbox 99.1 1.4E-09 3E-14 110.9 12.5 56 273-330 101-157 (618)
147 PRK08401 L-aspartate oxidase; 99.0 5E-09 1.1E-13 107.0 16.0 56 272-330 120-175 (466)
148 PRK05945 sdhA succinate dehydr 99.0 4.1E-09 8.8E-14 110.4 15.6 58 272-330 135-197 (575)
149 PRK12843 putative FAD-binding 99.0 1.5E-08 3.3E-13 106.1 19.7 59 271-330 220-282 (578)
150 PRK07803 sdhA succinate dehydr 99.0 3.3E-09 7.1E-14 111.8 14.6 41 56-96 7-47 (626)
151 PRK12842 putative succinate de 99.0 5.9E-09 1.3E-13 109.3 16.4 58 272-330 214-275 (574)
152 PRK07843 3-ketosteroid-delta-1 99.0 9.2E-09 2E-13 107.2 17.7 44 55-98 5-48 (557)
153 PRK08641 sdhA succinate dehydr 99.0 1E-08 2.2E-13 107.4 17.3 59 272-330 133-200 (589)
154 TIGR03378 glycerol3P_GlpB glyc 99.0 2.2E-09 4.7E-14 105.1 11.3 63 272-335 263-327 (419)
155 PRK12837 3-ketosteroid-delta-1 99.0 1.4E-08 3E-13 105.0 18.0 42 55-97 5-46 (513)
156 PRK08205 sdhA succinate dehydr 99.0 4.6E-09 1E-13 110.1 14.6 59 272-330 140-206 (583)
157 PF05834 Lycopene_cycl: Lycope 99.0 5.2E-08 1.1E-12 96.7 21.4 55 273-330 88-142 (374)
158 PRK08626 fumarate reductase fl 99.0 1.8E-09 4E-14 113.9 11.2 58 272-330 158-220 (657)
159 TIGR02485 CobZ_N-term precorri 99.0 3.9E-09 8.5E-14 107.1 13.2 59 271-329 122-182 (432)
160 PRK12834 putative FAD-binding 99.0 9.2E-09 2E-13 107.3 16.2 42 56-97 3-46 (549)
161 PRK07538 hypothetical protein; 99.0 2.6E-07 5.7E-12 93.3 26.3 35 58-92 1-35 (413)
162 PF12831 FAD_oxidored: FAD dep 99.0 7E-10 1.5E-14 111.9 6.4 59 278-337 96-157 (428)
163 PRK06069 sdhA succinate dehydr 99.0 1.1E-08 2.3E-13 107.4 15.4 58 272-330 137-200 (577)
164 PRK07236 hypothetical protein; 99.0 5.9E-09 1.3E-13 104.4 12.9 62 56-132 5-66 (386)
165 PRK08071 L-aspartate oxidase; 99.0 9.2E-09 2E-13 106.0 14.5 57 272-330 130-190 (510)
166 PF04820 Trp_halogenase: Trypt 99.0 8.6E-09 1.9E-13 104.3 14.0 58 272-330 154-211 (454)
167 TIGR01811 sdhA_Bsu succinate d 99.0 1.2E-08 2.6E-13 107.0 15.2 59 272-330 129-196 (603)
168 PRK09231 fumarate reductase fl 99.0 1.4E-08 3E-13 106.3 15.6 58 272-330 133-196 (582)
169 TIGR01176 fum_red_Fp fumarate 99.0 1.5E-08 3.3E-13 105.7 15.8 58 272-330 132-195 (580)
170 PRK05249 soluble pyridine nucl 99.0 3.1E-09 6.8E-14 109.0 10.5 60 272-333 216-275 (461)
171 TIGR03197 MnmC_Cterm tRNA U-34 99.0 3.1E-08 6.7E-13 99.0 17.4 57 271-330 134-190 (381)
172 PTZ00306 NADH-dependent fumara 98.9 8.1E-09 1.8E-13 116.1 13.5 43 55-97 407-449 (1167)
173 PRK06854 adenylylsulfate reduc 98.9 2.5E-08 5.3E-13 104.9 16.3 58 272-330 132-195 (608)
174 PF13454 NAD_binding_9: FAD-NA 98.9 2.6E-08 5.7E-13 85.5 13.6 50 276-328 105-155 (156)
175 PRK05329 anaerobic glycerol-3- 98.9 5.7E-09 1.2E-13 103.6 10.7 62 272-334 259-322 (422)
176 TIGR01292 TRX_reduct thioredox 98.9 9.6E-09 2.1E-13 99.2 12.1 38 58-96 1-38 (300)
177 PRK07512 L-aspartate oxidase; 98.9 1.8E-08 3.8E-13 104.0 13.8 59 271-330 135-197 (513)
178 COG2072 TrkA Predicted flavopr 98.9 1.1E-08 2.3E-13 103.2 11.6 46 53-98 4-50 (443)
179 TIGR01372 soxA sarcosine oxida 98.9 5.8E-08 1.3E-12 107.8 18.4 43 56-98 162-204 (985)
180 COG2509 Uncharacterized FAD-de 98.9 7.8E-07 1.7E-11 85.6 23.3 59 271-330 172-230 (486)
181 PRK09077 L-aspartate oxidase; 98.9 2.7E-08 5.9E-13 103.3 14.8 59 272-330 138-207 (536)
182 PLN02927 antheraxanthin epoxid 98.9 3.1E-07 6.7E-12 95.7 22.3 36 55-90 79-114 (668)
183 PRK12831 putative oxidoreducta 98.9 6.4E-08 1.4E-12 98.6 16.8 44 54-97 137-180 (464)
184 PF01134 GIDA: Glucose inhibit 98.9 1.8E-08 3.9E-13 97.5 12.0 56 273-330 96-152 (392)
185 PRK08275 putative oxidoreducta 98.9 5.2E-08 1.1E-12 101.7 16.3 59 272-330 137-200 (554)
186 KOG0042 Glycerol-3-phosphate d 98.9 4.6E-09 1E-13 102.0 7.5 154 263-434 214-377 (680)
187 PF06039 Mqo: Malate:quinone o 98.9 6.2E-09 1.3E-13 100.7 8.1 63 271-334 180-248 (488)
188 PRK06116 glutathione reductase 98.9 3.5E-08 7.5E-13 100.8 14.2 57 273-330 209-265 (450)
189 TIGR01350 lipoamide_DH dihydro 98.8 1.8E-08 3.9E-13 103.4 11.7 41 57-98 1-41 (461)
190 TIGR01421 gluta_reduc_1 glutat 98.8 4.1E-08 8.9E-13 99.9 14.1 60 273-333 208-268 (450)
191 PRK06753 hypothetical protein; 98.8 1.2E-08 2.7E-13 101.7 10.1 36 58-93 1-36 (373)
192 PRK06416 dihydrolipoamide dehy 98.8 1.4E-08 3E-13 104.2 10.5 42 56-98 3-44 (462)
193 PTZ00367 squalene epoxidase; P 98.8 7.4E-07 1.6E-11 92.3 23.0 64 54-132 30-93 (567)
194 TIGR03140 AhpF alkyl hydropero 98.8 1.8E-08 3.9E-13 104.3 11.1 52 277-330 272-323 (515)
195 KOG2404 Fumarate reductase, fl 98.8 3E-08 6.5E-13 90.2 10.9 40 59-98 11-50 (477)
196 PRK15317 alkyl hydroperoxide r 98.8 2.2E-08 4.8E-13 103.8 11.5 52 277-330 271-322 (517)
197 TIGR00136 gidA glucose-inhibit 98.8 3.4E-08 7.3E-13 100.8 12.4 59 272-331 96-155 (617)
198 KOG2614 Kynurenine 3-monooxyge 98.8 2.4E-07 5.3E-12 88.1 17.1 38 57-94 2-39 (420)
199 TIGR01316 gltA glutamate synth 98.8 2E-07 4.3E-12 94.8 18.0 43 55-97 131-173 (449)
200 PRK09897 hypothetical protein; 98.8 4.3E-08 9.4E-13 100.2 12.6 41 58-98 2-45 (534)
201 COG0029 NadB Aspartate oxidase 98.8 8.3E-07 1.8E-11 86.5 20.2 58 271-328 132-194 (518)
202 PRK06115 dihydrolipoamide dehy 98.8 2.4E-08 5.3E-13 102.1 10.4 42 57-98 3-44 (466)
203 PRK07251 pyridine nucleotide-d 98.8 5.4E-08 1.2E-12 99.1 12.8 42 57-98 3-45 (438)
204 TIGR01424 gluta_reduc_2 glutat 98.8 1.9E-07 4.1E-12 95.2 16.7 41 57-98 2-42 (446)
205 TIGR03219 salicylate_mono sali 98.8 1.4E-08 3E-13 102.7 8.4 54 273-330 106-159 (414)
206 PRK06327 dihydrolipoamide dehy 98.8 1.5E-07 3.3E-12 96.6 16.0 42 56-97 3-50 (475)
207 KOG2852 Possible oxidoreductas 98.8 2.3E-08 4.9E-13 89.7 8.3 64 271-337 146-214 (380)
208 PRK06475 salicylate hydroxylas 98.8 1.5E-07 3.3E-12 94.7 15.0 62 273-336 108-174 (400)
209 PF00732 GMC_oxred_N: GMC oxid 98.8 8.2E-08 1.8E-12 92.5 12.6 36 58-93 1-37 (296)
210 PRK12779 putative bifunctional 98.8 2E-07 4.4E-12 102.0 16.8 43 55-97 304-346 (944)
211 PRK12769 putative oxidoreducta 98.8 1.7E-07 3.7E-12 100.0 15.6 44 55-98 325-368 (654)
212 PRK12775 putative trifunctiona 98.7 3.5E-07 7.6E-12 101.1 18.4 44 55-98 428-471 (1006)
213 PRK08010 pyridine nucleotide-d 98.7 8.4E-08 1.8E-12 97.7 12.2 56 272-330 199-254 (441)
214 PRK06467 dihydrolipoamide dehy 98.7 3E-07 6.5E-12 94.2 16.2 43 56-98 3-45 (471)
215 PRK07818 dihydrolipoamide dehy 98.7 9.8E-08 2.1E-12 97.9 12.5 41 57-98 4-44 (466)
216 PRK05976 dihydrolipoamide dehy 98.7 3.3E-07 7.2E-12 94.1 16.4 42 56-98 3-44 (472)
217 KOG2415 Electron transfer flav 98.7 8.5E-08 1.9E-12 90.4 10.7 58 271-328 182-254 (621)
218 KOG1399 Flavin-containing mono 98.7 1.2E-07 2.7E-12 94.2 12.5 43 56-98 5-47 (448)
219 TIGR01789 lycopene_cycl lycope 98.7 1.7E-06 3.6E-11 85.6 20.3 36 59-94 1-38 (370)
220 TIGR02061 aprA adenosine phosp 98.7 4.1E-07 8.8E-12 95.0 16.5 58 273-330 127-191 (614)
221 PF00743 FMO-like: Flavin-bind 98.7 8.4E-08 1.8E-12 98.5 11.3 41 58-98 2-42 (531)
222 TIGR03143 AhpF_homolog putativ 98.7 8E-08 1.7E-12 100.3 10.4 41 56-97 3-43 (555)
223 COG3075 GlpB Anaerobic glycero 98.7 4E-07 8.6E-12 83.5 13.2 64 273-337 259-324 (421)
224 PRK11749 dihydropyrimidine deh 98.7 1.1E-06 2.4E-11 89.8 18.3 43 55-97 138-180 (457)
225 COG1249 Lpd Pyruvate/2-oxoglut 98.7 4.9E-07 1.1E-11 90.4 15.0 57 272-330 214-272 (454)
226 KOG2665 Predicted FAD-dependen 98.7 2.6E-07 5.7E-12 84.0 11.4 59 272-330 196-257 (453)
227 PRK12778 putative bifunctional 98.7 4.7E-07 1E-11 98.2 15.6 43 55-97 429-471 (752)
228 COG0492 TrxB Thioredoxin reduc 98.6 2.1E-07 4.5E-12 88.3 11.2 43 472-515 261-303 (305)
229 TIGR01318 gltD_gamma_fam gluta 98.6 2.2E-06 4.8E-11 87.5 18.8 43 55-97 139-181 (467)
230 PRK10262 thioredoxin reductase 98.6 2.7E-07 5.9E-12 89.8 11.6 43 55-98 4-46 (321)
231 TIGR03377 glycerol3P_GlpA glyc 98.6 6.5E-06 1.4E-10 85.6 22.3 59 271-330 127-190 (516)
232 KOG1439 RAB proteins geranylge 98.6 5.8E-07 1.3E-11 84.7 12.6 253 56-325 3-284 (440)
233 PRK12809 putative oxidoreducta 98.6 1.1E-06 2.5E-11 93.3 16.2 43 55-97 308-350 (639)
234 COG1252 Ndh NADH dehydrogenase 98.6 8.9E-07 1.9E-11 86.3 14.0 54 271-330 208-262 (405)
235 PRK06370 mercuric reductase; V 98.6 1.3E-06 2.8E-11 89.6 15.9 41 56-97 4-44 (463)
236 PTZ00058 glutathione reductase 98.6 8.3E-07 1.8E-11 91.9 14.1 43 55-98 46-88 (561)
237 PLN02507 glutathione reductase 98.6 2.9E-06 6.2E-11 87.4 17.3 44 55-98 23-75 (499)
238 PTZ00052 thioredoxin reductase 98.5 7.3E-07 1.6E-11 91.9 12.8 61 273-335 223-283 (499)
239 PRK13800 putative oxidoreducta 98.5 1.5E-06 3.3E-11 95.8 15.6 36 56-91 12-47 (897)
240 COG3573 Predicted oxidoreducta 98.5 2.1E-06 4.5E-11 78.9 13.0 41 56-96 4-46 (552)
241 PLN02546 glutathione reductase 98.5 5.7E-06 1.2E-10 85.8 17.7 33 56-88 78-110 (558)
242 TIGR01810 betA choline dehydro 98.5 2.9E-06 6.3E-11 88.5 15.3 52 276-328 197-253 (532)
243 COG1053 SdhA Succinate dehydro 98.5 1.5E-06 3.3E-11 89.4 12.8 44 55-98 4-47 (562)
244 PRK07845 flavoprotein disulfid 98.5 5.5E-06 1.2E-10 84.9 16.9 40 58-98 2-41 (466)
245 TIGR02462 pyranose_ox pyranose 98.5 3.6E-06 7.8E-11 86.1 15.0 37 58-94 1-37 (544)
246 PF00070 Pyr_redox: Pyridine n 98.5 2.3E-06 5.1E-11 64.1 10.4 34 59-92 1-34 (80)
247 PRK12771 putative glutamate sy 98.5 1.4E-05 3.1E-10 83.9 20.0 43 55-97 135-177 (564)
248 PRK02106 choline dehydrogenase 98.4 2.1E-06 4.6E-11 90.1 13.1 37 55-91 3-40 (560)
249 COG4716 Myosin-crossreactive a 98.4 9.2E-07 2E-11 82.4 8.4 72 56-128 21-97 (587)
250 PRK09754 phenylpropionate diox 98.4 4.4E-07 9.5E-12 91.1 7.0 55 273-330 187-241 (396)
251 KOG1298 Squalene monooxygenase 98.4 7.7E-06 1.7E-10 76.8 14.2 36 54-89 42-77 (509)
252 PRK14989 nitrite reductase sub 98.3 4.2E-06 9.2E-11 90.9 11.7 56 275-330 190-245 (847)
253 COG5044 MRS6 RAB proteins gera 98.3 1.4E-05 3E-10 74.8 12.6 248 56-325 5-279 (434)
254 PLN02852 ferredoxin-NADP+ redu 98.3 1.5E-06 3.3E-11 87.9 6.6 45 54-98 23-69 (491)
255 TIGR03315 Se_ygfK putative sel 98.3 1.5E-06 3.3E-11 94.5 6.9 43 56-98 536-578 (1012)
256 KOG4405 GDP dissociation inhib 98.2 7.6E-05 1.6E-09 70.7 16.9 120 202-326 218-341 (547)
257 PTZ00318 NADH dehydrogenase-li 98.2 5.6E-05 1.2E-09 76.5 17.8 52 272-329 228-279 (424)
258 COG1148 HdrA Heterodisulfide r 98.2 1.1E-06 2.4E-11 84.7 4.7 44 55-98 122-165 (622)
259 KOG1335 Dihydrolipoamide dehyd 98.2 4.1E-05 9E-10 72.0 14.7 43 56-98 38-80 (506)
260 TIGR02374 nitri_red_nirB nitri 98.2 7.1E-06 1.5E-10 89.1 10.6 54 275-330 185-238 (785)
261 PRK06912 acoL dihydrolipoamide 98.2 5E-05 1.1E-09 77.8 16.1 40 58-98 1-40 (458)
262 PRK13512 coenzyme A disulfide 98.2 5.4E-05 1.2E-09 77.0 15.6 52 273-330 190-241 (438)
263 COG4529 Uncharacterized protei 98.1 2.8E-05 6E-10 76.2 12.2 38 57-94 1-41 (474)
264 PRK09853 putative selenate red 98.1 3.1E-06 6.8E-11 91.7 5.7 44 55-98 537-580 (1019)
265 PRK09564 coenzyme A disulfide 98.1 6.7E-06 1.5E-10 84.1 7.8 35 58-92 1-37 (444)
266 PRK07846 mycothione reductase; 98.1 5.8E-05 1.3E-09 77.0 13.8 39 57-98 1-39 (451)
267 COG0445 GidA Flavin-dependent 98.1 1.1E-05 2.3E-10 79.7 7.9 34 56-89 3-36 (621)
268 PRK06292 dihydrolipoamide dehy 98.1 4.1E-06 8.9E-11 86.0 5.3 41 56-97 2-42 (460)
269 TIGR03452 mycothione_red mycot 98.1 0.00011 2.3E-09 75.1 15.2 39 57-98 2-40 (452)
270 KOG0405 Pyridine nucleotide-di 98.0 1.5E-05 3.2E-10 74.0 7.7 44 55-98 18-61 (478)
271 PTZ00188 adrenodoxin reductase 98.0 8.8E-06 1.9E-10 81.2 6.4 43 56-98 38-81 (506)
272 PRK14694 putative mercuric red 98.0 6.3E-06 1.4E-10 84.6 5.7 43 55-98 4-46 (468)
273 PF07156 Prenylcys_lyase: Pren 98.0 0.00014 3.1E-09 70.9 14.4 114 206-330 69-187 (368)
274 PRK12810 gltD glutamate syntha 98.0 8.9E-06 1.9E-10 83.4 6.5 43 55-97 141-183 (471)
275 TIGR02053 MerA mercuric reduct 98.0 6.3E-06 1.4E-10 84.6 5.3 39 58-97 1-39 (463)
276 PRK14727 putative mercuric red 98.0 7.2E-06 1.6E-10 84.3 5.5 44 55-98 14-57 (479)
277 TIGR03169 Nterm_to_SelD pyridi 98.0 3.5E-05 7.6E-10 76.5 10.1 52 273-330 192-243 (364)
278 KOG1336 Monodehydroascorbate/f 98.0 7.7E-05 1.7E-09 72.7 11.6 65 272-336 255-319 (478)
279 PRK06567 putative bifunctional 98.0 1.1E-05 2.3E-10 86.6 6.2 42 54-95 380-421 (1028)
280 PRK13748 putative mercuric red 98.0 7.5E-06 1.6E-10 86.3 5.1 57 273-332 311-367 (561)
281 PRK12814 putative NADPH-depend 98.0 1.3E-05 2.8E-10 85.4 6.8 42 56-97 192-233 (652)
282 PRK05335 tRNA (uracil-5-)-meth 98.0 1E-05 2.2E-10 79.4 5.4 37 57-93 2-38 (436)
283 PRK04965 NADH:flavorubredoxin 97.9 9.1E-05 2E-09 73.9 11.7 51 278-330 189-239 (377)
284 PRK06370 mercuric reductase; V 97.9 0.00019 4.1E-09 73.7 13.7 35 57-91 171-205 (463)
285 COG0493 GltD NADPH-dependent g 97.9 2.1E-05 4.6E-10 78.9 5.8 43 56-98 122-164 (457)
286 TIGR01317 GOGAT_sm_gam glutama 97.8 2.7E-05 5.8E-10 80.0 6.3 43 56-98 142-184 (485)
287 KOG3923 D-aspartate oxidase [A 97.8 0.00072 1.6E-08 61.8 14.4 185 272-513 151-338 (342)
288 KOG0404 Thioredoxin reductase 97.8 0.00012 2.6E-09 63.7 9.0 62 273-338 71-132 (322)
289 PRK05976 dihydrolipoamide dehy 97.8 0.0002 4.3E-09 73.7 12.5 34 58-91 181-214 (472)
290 TIGR01423 trypano_reduc trypan 97.8 2.2E-05 4.7E-10 80.5 5.4 58 272-330 231-288 (486)
291 TIGR00137 gid_trmFO tRNA:m(5)U 97.8 2.2E-05 4.8E-10 77.7 5.0 37 58-94 1-37 (433)
292 PF07992 Pyr_redox_2: Pyridine 97.8 2.7E-05 5.9E-10 70.1 5.0 33 59-91 1-33 (201)
293 TIGR02053 MerA mercuric reduct 97.8 0.00032 7E-09 72.0 13.4 34 58-91 167-200 (463)
294 KOG0399 Glutamate synthase [Am 97.7 3.7E-05 8.1E-10 81.3 5.5 43 55-97 1783-1825(2142)
295 PRK12770 putative glutamate sy 97.7 5.4E-05 1.2E-09 74.7 6.5 43 56-98 17-59 (352)
296 PRK07845 flavoprotein disulfid 97.7 0.00037 8E-09 71.5 12.9 51 278-330 224-274 (466)
297 PRK09564 coenzyme A disulfide 97.7 0.00039 8.4E-09 71.1 12.7 50 278-330 197-246 (444)
298 KOG2960 Protein involved in th 97.7 1.2E-05 2.6E-10 69.1 1.2 65 57-132 76-144 (328)
299 PTZ00153 lipoamide dehydrogena 97.7 4.1E-05 8.8E-10 80.7 5.3 42 57-98 116-158 (659)
300 COG0446 HcaD Uncharacterized N 97.7 0.00037 8.1E-09 70.5 11.4 38 57-94 136-173 (415)
301 TIGR01424 gluta_reduc_2 glutat 97.7 0.00044 9.6E-09 70.6 11.9 50 279-330 214-263 (446)
302 KOG2311 NAD/FAD-utilizing prot 97.7 0.00019 4.2E-09 69.5 8.4 41 55-95 26-67 (679)
303 PRK13984 putative oxidoreducta 97.6 8E-05 1.7E-09 79.1 6.6 43 55-97 281-323 (604)
304 PLN02507 glutathione reductase 97.6 0.0005 1.1E-08 71.0 12.2 51 278-330 250-300 (499)
305 PRK07846 mycothione reductase; 97.6 0.00083 1.8E-08 68.6 13.6 49 285-335 219-267 (451)
306 TIGR01423 trypano_reduc trypan 97.6 0.0006 1.3E-08 70.0 12.6 37 57-93 187-226 (486)
307 PRK06912 acoL dihydrolipoamide 97.6 0.00082 1.8E-08 68.9 13.2 33 58-90 171-203 (458)
308 TIGR03385 CoA_CoA_reduc CoA-di 97.6 0.00063 1.4E-08 69.1 12.3 48 279-330 186-233 (427)
309 PRK05675 sdhA succinate dehydr 97.6 0.00056 1.2E-08 71.8 12.0 60 271-330 125-189 (570)
310 TIGR01438 TGR thioredoxin and 97.6 6.7E-05 1.5E-09 77.1 5.1 60 272-333 220-282 (484)
311 TIGR03862 flavo_PP4765 unchara 97.6 0.00048 1E-08 67.4 10.5 56 271-330 85-141 (376)
312 PTZ00058 glutathione reductase 97.6 0.00079 1.7E-08 70.0 12.6 34 57-90 237-270 (561)
313 PRK08255 salicylyl-CoA 5-hydro 97.5 8.7E-05 1.9E-09 80.6 5.1 34 58-91 1-36 (765)
314 PRK06327 dihydrolipoamide dehy 97.5 0.001 2.2E-08 68.5 11.7 33 58-90 184-216 (475)
315 KOG1800 Ferredoxin/adrenodoxin 97.4 0.00021 4.5E-09 67.4 5.4 43 56-98 19-63 (468)
316 PF13434 K_oxygenase: L-lysine 97.4 0.00065 1.4E-08 66.2 8.8 36 57-92 2-38 (341)
317 PRK14727 putative mercuric red 97.4 0.0014 3E-08 67.6 11.4 53 278-333 234-286 (479)
318 PRK14694 putative mercuric red 97.4 0.0015 3.2E-08 67.2 11.2 54 278-334 224-277 (468)
319 PRK13748 putative mercuric red 97.3 0.0019 4.1E-08 68.2 11.9 32 58-89 271-302 (561)
320 COG2303 BetA Choline dehydroge 97.3 0.00023 5E-09 73.9 4.6 36 55-90 5-40 (542)
321 PLN02546 glutathione reductase 97.3 0.0024 5.1E-08 66.6 12.0 55 278-333 299-353 (558)
322 COG3634 AhpF Alkyl hydroperoxi 97.3 0.00061 1.3E-08 63.5 6.5 66 273-338 267-333 (520)
323 PRK06467 dihydrolipoamide dehy 97.3 0.0025 5.4E-08 65.5 11.7 34 58-91 175-208 (471)
324 PLN02785 Protein HOTHEAD 97.3 0.00044 9.5E-09 72.4 6.2 38 52-90 50-87 (587)
325 TIGR03452 mycothione_red mycot 97.3 0.0029 6.2E-08 64.7 12.0 49 285-335 222-270 (452)
326 TIGR01438 TGR thioredoxin and 97.2 0.0025 5.5E-08 65.6 11.4 32 58-89 181-212 (484)
327 PTZ00153 lipoamide dehydrogena 97.2 0.0033 7.1E-08 66.6 11.5 34 58-91 313-346 (659)
328 PRK06292 dihydrolipoamide dehy 97.1 0.0065 1.4E-07 62.4 12.3 35 57-91 169-203 (460)
329 PF13434 K_oxygenase: L-lysine 96.7 0.015 3.3E-07 56.7 11.1 36 54-89 187-224 (341)
330 KOG4716 Thioredoxin reductase 96.6 0.0023 4.9E-08 59.6 3.9 59 271-330 237-300 (503)
331 COG1251 NirB NAD(P)H-nitrite r 96.5 0.0074 1.6E-07 62.4 7.6 52 277-330 192-243 (793)
332 COG1206 Gid NAD(FAD)-utilizing 96.5 0.0026 5.6E-08 59.1 3.8 34 58-91 4-37 (439)
333 COG1249 Lpd Pyruvate/2-oxoglut 96.4 0.0065 1.4E-07 61.2 6.3 39 56-94 172-210 (454)
334 PRK09754 phenylpropionate diox 96.3 0.0075 1.6E-07 60.6 6.2 38 57-94 144-181 (396)
335 PRK04965 NADH:flavorubredoxin 96.3 0.0051 1.1E-07 61.4 5.0 33 58-90 3-37 (377)
336 PF01210 NAD_Gly3P_dh_N: NAD-d 96.1 0.006 1.3E-07 52.3 4.0 32 59-90 1-32 (157)
337 PF02737 3HCDH_N: 3-hydroxyacy 96.1 0.0072 1.6E-07 53.0 4.5 32 59-90 1-32 (180)
338 COG3486 IucD Lysine/ornithine 96.1 0.12 2.7E-06 50.0 12.7 38 55-92 3-41 (436)
339 KOG1238 Glucose dehydrogenase/ 96.0 0.0072 1.6E-07 61.8 4.1 38 54-91 54-92 (623)
340 PF03721 UDPG_MGDP_dh_N: UDP-g 95.9 0.0089 1.9E-07 52.6 3.8 34 58-91 1-34 (185)
341 KOG1346 Programmed cell death 95.8 0.035 7.6E-07 53.4 7.6 63 271-335 392-454 (659)
342 PRK01438 murD UDP-N-acetylmura 95.7 0.014 3E-07 60.3 5.3 34 57-90 16-49 (480)
343 KOG3855 Monooxygenase involved 95.6 0.015 3.2E-07 56.0 4.2 34 56-89 35-72 (481)
344 PRK02705 murD UDP-N-acetylmura 95.5 0.017 3.6E-07 59.4 4.7 33 59-91 2-34 (459)
345 PRK07251 pyridine nucleotide-d 95.4 0.025 5.3E-07 57.8 5.5 35 58-92 158-192 (438)
346 PF02558 ApbA: Ketopantoate re 95.3 0.02 4.4E-07 48.7 4.1 31 60-90 1-31 (151)
347 PRK06129 3-hydroxyacyl-CoA deh 95.3 0.024 5.2E-07 54.7 4.8 33 58-90 3-35 (308)
348 COG0569 TrkA K+ transport syst 95.2 0.027 5.9E-07 51.4 4.7 34 58-91 1-34 (225)
349 PRK05249 soluble pyridine nucl 95.2 0.037 8E-07 56.9 6.3 37 57-93 175-211 (461)
350 TIGR01350 lipoamide_DH dihydro 95.1 0.03 6.5E-07 57.6 5.2 34 58-91 171-204 (461)
351 PF01262 AlaDh_PNT_C: Alanine 95.0 0.04 8.7E-07 47.8 5.0 34 56-89 19-52 (168)
352 TIGR01316 gltA glutamate synth 95.0 0.066 1.4E-06 54.7 7.4 35 56-90 271-305 (449)
353 PRK07066 3-hydroxybutyryl-CoA 95.0 0.04 8.7E-07 52.9 5.4 34 57-90 7-40 (321)
354 PF13738 Pyr_redox_3: Pyridine 95.0 0.03 6.5E-07 50.3 4.4 35 56-90 166-200 (203)
355 TIGR01421 gluta_reduc_1 glutat 95.0 0.034 7.3E-07 56.9 5.1 36 58-93 167-202 (450)
356 PRK07819 3-hydroxybutyryl-CoA 95.0 0.038 8.3E-07 52.5 5.1 34 58-91 6-39 (286)
357 PRK12831 putative oxidoreducta 94.9 0.074 1.6E-06 54.5 7.2 34 56-89 280-313 (464)
358 PRK06115 dihydrolipoamide dehy 94.8 0.044 9.5E-07 56.3 5.5 35 57-91 174-208 (466)
359 KOG2755 Oxidoreductase [Genera 94.8 0.02 4.3E-07 51.6 2.5 34 59-92 1-36 (334)
360 PRK13512 coenzyme A disulfide 94.8 0.038 8.2E-07 56.3 4.9 36 58-93 149-184 (438)
361 PF01488 Shikimate_DH: Shikima 94.8 0.069 1.5E-06 44.4 5.6 34 56-89 11-45 (135)
362 TIGR02374 nitri_red_nirB nitri 94.7 0.05 1.1E-06 59.6 5.9 36 57-92 140-175 (785)
363 PRK06416 dihydrolipoamide dehy 94.7 0.042 9E-07 56.5 5.1 34 58-91 173-206 (462)
364 PRK07818 dihydrolipoamide dehy 94.7 0.043 9.3E-07 56.4 5.0 34 58-91 173-206 (466)
365 PRK08293 3-hydroxybutyryl-CoA 94.6 0.051 1.1E-06 51.9 4.9 33 58-90 4-36 (287)
366 cd01080 NAD_bind_m-THF_DH_Cycl 94.6 0.064 1.4E-06 46.2 5.0 34 56-89 43-77 (168)
367 PRK09260 3-hydroxybutyryl-CoA 94.5 0.05 1.1E-06 52.0 4.7 33 58-90 2-34 (288)
368 PRK06249 2-dehydropantoate 2-r 94.5 0.065 1.4E-06 51.8 5.6 35 56-90 4-38 (313)
369 PRK14106 murD UDP-N-acetylmura 94.4 0.057 1.2E-06 55.4 5.2 35 56-90 4-38 (450)
370 TIGR01470 cysG_Nterm siroheme 94.4 0.068 1.5E-06 47.9 5.0 33 57-89 9-41 (205)
371 PRK14989 nitrite reductase sub 94.4 0.069 1.5E-06 58.7 6.0 36 57-92 145-180 (847)
372 COG1004 Ugd Predicted UDP-gluc 94.3 0.053 1.2E-06 52.3 4.3 33 58-90 1-33 (414)
373 PRK07530 3-hydroxybutyryl-CoA 94.3 0.064 1.4E-06 51.3 4.9 32 58-89 5-36 (292)
374 PRK05708 2-dehydropantoate 2-r 94.1 0.078 1.7E-06 51.0 5.2 33 57-89 2-34 (305)
375 COG0686 Ald Alanine dehydrogen 94.1 0.062 1.3E-06 49.9 4.0 35 55-89 166-200 (371)
376 PF13241 NAD_binding_7: Putati 94.0 0.053 1.1E-06 42.6 3.1 34 56-89 6-39 (103)
377 TIGR03140 AhpF alkyl hydropero 94.0 0.076 1.6E-06 55.3 5.1 34 57-90 352-385 (515)
378 KOG2304 3-hydroxyacyl-CoA dehy 93.9 0.07 1.5E-06 47.0 3.9 39 53-91 7-45 (298)
379 PRK06035 3-hydroxyacyl-CoA deh 93.8 0.079 1.7E-06 50.7 4.6 33 58-90 4-36 (291)
380 PRK06718 precorrin-2 dehydroge 93.8 0.11 2.4E-06 46.4 5.1 34 56-89 9-42 (202)
381 TIGR01816 sdhA_forward succina 93.8 0.18 3.8E-06 53.2 7.4 59 271-330 118-181 (565)
382 PRK06522 2-dehydropantoate 2-r 93.7 0.089 1.9E-06 50.7 4.8 32 58-89 1-32 (304)
383 PRK12778 putative bifunctional 93.7 0.17 3.6E-06 55.5 7.4 34 56-89 569-603 (752)
384 PRK06719 precorrin-2 dehydroge 93.7 0.12 2.7E-06 44.1 5.0 32 56-87 12-43 (157)
385 TIGR02354 thiF_fam2 thiamine b 93.7 0.1 2.2E-06 46.6 4.7 35 56-90 20-55 (200)
386 PRK04148 hypothetical protein; 93.6 0.084 1.8E-06 43.2 3.6 34 57-91 17-50 (134)
387 cd05292 LDH_2 A subgroup of L- 93.6 0.1 2.2E-06 50.2 4.9 33 58-90 1-35 (308)
388 PRK12921 2-dehydropantoate 2-r 93.6 0.099 2.1E-06 50.4 4.8 31 58-88 1-31 (305)
389 PRK05808 3-hydroxybutyryl-CoA 93.6 0.093 2E-06 49.9 4.6 33 58-90 4-36 (282)
390 PRK08229 2-dehydropantoate 2-r 93.5 0.096 2.1E-06 51.4 4.7 32 58-89 3-34 (341)
391 PRK10262 thioredoxin reductase 93.5 0.11 2.5E-06 50.4 5.1 35 56-90 145-179 (321)
392 TIGR01763 MalateDH_bact malate 93.5 0.12 2.6E-06 49.6 5.1 32 58-89 2-34 (305)
393 PRK06116 glutathione reductase 93.4 0.12 2.5E-06 53.0 5.3 36 57-92 167-202 (450)
394 TIGR03143 AhpF_homolog putativ 93.4 0.097 2.1E-06 55.0 4.7 37 56-92 142-178 (555)
395 PRK08010 pyridine nucleotide-d 93.3 0.12 2.6E-06 52.8 5.1 36 58-93 159-194 (441)
396 PLN02545 3-hydroxybutyryl-CoA 93.3 0.13 2.7E-06 49.4 4.9 33 58-90 5-37 (295)
397 TIGR00518 alaDH alanine dehydr 93.2 0.13 2.9E-06 50.8 5.1 34 56-89 166-199 (370)
398 PRK15317 alkyl hydroperoxide r 93.2 0.12 2.7E-06 53.8 5.1 35 56-90 350-384 (517)
399 PRK12770 putative glutamate sy 93.2 0.14 3E-06 50.6 5.2 33 57-89 172-205 (352)
400 PRK11064 wecC UDP-N-acetyl-D-m 93.1 0.12 2.7E-06 52.0 4.7 34 58-91 4-37 (415)
401 TIGR03026 NDP-sugDHase nucleot 93.0 0.11 2.5E-06 52.3 4.5 33 59-91 2-34 (411)
402 PRK14618 NAD(P)H-dependent gly 93.0 0.15 3.2E-06 49.7 5.1 34 57-90 4-37 (328)
403 PRK06130 3-hydroxybutyryl-CoA 93.0 0.15 3.3E-06 49.3 5.1 34 57-90 4-37 (311)
404 TIGR01292 TRX_reduct thioredox 92.8 0.16 3.5E-06 48.7 5.1 33 57-89 141-173 (300)
405 PRK14619 NAD(P)H-dependent gly 92.8 0.19 4E-06 48.6 5.4 35 56-90 3-37 (308)
406 PTZ00052 thioredoxin reductase 92.8 0.16 3.4E-06 52.7 5.2 32 58-89 183-214 (499)
407 cd05311 NAD_bind_2_malic_enz N 92.8 0.18 4E-06 46.0 5.0 34 56-89 24-60 (226)
408 TIGR02279 PaaC-3OHAcCoADH 3-hy 92.7 0.17 3.7E-06 52.1 5.2 35 56-90 4-38 (503)
409 COG0771 MurD UDP-N-acetylmuram 92.6 0.14 3E-06 51.3 4.2 36 57-92 7-42 (448)
410 PRK04690 murD UDP-N-acetylmura 92.6 0.16 3.4E-06 52.2 4.8 35 57-91 8-42 (468)
411 PF00899 ThiF: ThiF family; I 92.6 0.18 4E-06 41.8 4.4 35 57-91 2-37 (135)
412 PF03446 NAD_binding_2: NAD bi 92.6 0.19 4.2E-06 43.3 4.7 33 58-90 2-34 (163)
413 PRK14620 NAD(P)H-dependent gly 92.6 0.16 3.5E-06 49.5 4.6 31 59-89 2-32 (326)
414 KOG3851 Sulfide:quinone oxidor 92.5 0.13 2.8E-06 48.0 3.6 38 54-91 36-75 (446)
415 PF00056 Ldh_1_N: lactate/mala 92.4 0.26 5.7E-06 41.2 5.1 33 58-90 1-36 (141)
416 PRK00094 gpsA NAD(P)H-dependen 92.4 0.18 3.9E-06 49.1 4.8 32 58-89 2-33 (325)
417 PRK08268 3-hydroxy-acyl-CoA de 92.4 0.19 4.2E-06 51.9 5.1 36 56-91 6-41 (507)
418 COG1252 Ndh NADH dehydrogenase 92.3 0.1 2.3E-06 51.4 3.0 60 56-132 154-226 (405)
419 PRK01710 murD UDP-N-acetylmura 92.2 0.19 4.1E-06 51.5 4.9 33 58-90 15-47 (458)
420 COG1748 LYS9 Saccharopine dehy 92.2 0.2 4.4E-06 49.1 4.7 33 57-89 1-34 (389)
421 cd05293 LDH_1 A subgroup of L- 92.2 0.25 5.4E-06 47.5 5.3 35 56-90 2-38 (312)
422 PRK09424 pntA NAD(P) transhydr 92.2 0.2 4.4E-06 51.2 4.9 34 56-89 164-197 (509)
423 cd05191 NAD_bind_amino_acid_DH 92.1 0.34 7.3E-06 36.5 4.9 33 56-88 22-55 (86)
424 PF02254 TrkA_N: TrkA-N domain 92.0 0.25 5.5E-06 39.6 4.4 32 60-91 1-32 (116)
425 PRK12549 shikimate 5-dehydroge 92.0 0.24 5.3E-06 47.0 4.9 34 56-89 126-160 (284)
426 PRK15057 UDP-glucose 6-dehydro 91.9 0.21 4.5E-06 49.7 4.5 32 59-91 2-33 (388)
427 PRK11730 fadB multifunctional 91.9 0.23 5E-06 53.7 5.2 34 57-90 313-346 (715)
428 PRK15116 sulfur acceptor prote 91.9 0.27 5.9E-06 45.8 4.9 36 56-91 29-65 (268)
429 PRK07531 bifunctional 3-hydrox 91.8 0.21 4.6E-06 51.5 4.7 33 58-90 5-37 (495)
430 PRK03369 murD UDP-N-acetylmura 91.8 0.24 5.1E-06 51.2 5.0 34 56-89 11-44 (488)
431 COG3634 AhpF Alkyl hydroperoxi 91.8 0.16 3.4E-06 48.0 3.2 36 54-89 351-386 (520)
432 PLN02353 probable UDP-glucose 91.8 0.23 5E-06 50.6 4.8 33 58-90 2-36 (473)
433 COG1250 FadB 3-hydroxyacyl-CoA 91.7 0.24 5.2E-06 47.0 4.5 33 57-89 3-35 (307)
434 TIGR02437 FadB fatty oxidation 91.6 0.26 5.5E-06 53.3 5.2 35 56-90 312-346 (714)
435 PRK11749 dihydropyrimidine deh 91.6 0.29 6.4E-06 50.2 5.4 34 56-89 272-306 (457)
436 cd01075 NAD_bind_Leu_Phe_Val_D 91.6 0.33 7.1E-06 43.4 5.0 35 56-90 27-61 (200)
437 PTZ00318 NADH dehydrogenase-li 91.6 0.26 5.6E-06 50.0 4.9 36 58-93 174-223 (424)
438 PLN02256 arogenate dehydrogena 91.5 0.62 1.3E-05 44.7 7.2 34 56-89 35-68 (304)
439 PRK02472 murD UDP-N-acetylmura 91.5 0.25 5.4E-06 50.5 4.9 34 57-90 5-38 (447)
440 PRK04308 murD UDP-N-acetylmura 91.4 0.29 6.3E-06 50.0 5.2 35 57-91 5-39 (445)
441 PRK12779 putative bifunctional 91.4 0.46 1E-05 53.0 6.9 35 56-90 446-480 (944)
442 PTZ00082 L-lactate dehydrogena 91.3 0.34 7.5E-06 46.8 5.2 35 57-91 6-41 (321)
443 KOG1336 Monodehydroascorbate/f 91.3 0.4 8.7E-06 47.5 5.6 71 15-91 177-247 (478)
444 PRK06223 malate dehydrogenase; 91.2 0.33 7.1E-06 46.8 5.1 33 58-90 3-36 (307)
445 PRK08306 dipicolinate synthase 91.1 0.36 7.8E-06 46.1 5.1 35 56-90 151-185 (296)
446 PRK08644 thiamine biosynthesis 91.0 0.36 7.9E-06 43.5 4.8 35 56-90 27-62 (212)
447 PRK07417 arogenate dehydrogena 91.0 0.27 5.9E-06 46.6 4.3 31 59-89 2-32 (279)
448 PRK12475 thiamine/molybdopteri 91.0 0.33 7.2E-06 47.2 4.8 35 56-90 23-58 (338)
449 PRK07688 thiamine/molybdopteri 90.9 0.35 7.6E-06 47.1 4.9 35 56-90 23-58 (339)
450 cd01487 E1_ThiF_like E1_ThiF_l 90.9 0.39 8.4E-06 41.8 4.7 32 59-90 1-33 (174)
451 PRK00421 murC UDP-N-acetylmura 90.8 0.31 6.7E-06 50.1 4.7 35 56-90 6-41 (461)
452 PRK01368 murD UDP-N-acetylmura 90.7 0.29 6.4E-06 49.9 4.4 32 57-89 6-37 (454)
453 cd05291 HicDH_like L-2-hydroxy 90.7 0.38 8.2E-06 46.3 4.9 32 59-90 2-35 (306)
454 TIGR01915 npdG NADPH-dependent 90.7 0.39 8.5E-06 43.7 4.8 32 58-89 1-33 (219)
455 COG0281 SfcA Malic enzyme [Ene 90.7 0.39 8.5E-06 46.8 4.9 35 56-90 198-235 (432)
456 PRK00141 murD UDP-N-acetylmura 90.7 0.34 7.5E-06 49.8 4.9 33 57-89 15-47 (473)
457 COG1893 ApbA Ketopantoate redu 90.7 0.31 6.8E-06 46.7 4.3 33 58-90 1-33 (307)
458 TIGR00561 pntA NAD(P) transhyd 90.7 0.37 7.9E-06 49.3 4.9 34 56-89 163-196 (511)
459 TIGR02441 fa_ox_alpha_mit fatt 90.6 0.34 7.4E-06 52.5 5.0 35 56-90 334-368 (737)
460 COG2072 TrkA Predicted flavopr 90.6 0.45 9.8E-06 48.4 5.6 36 56-91 174-209 (443)
461 TIGR02356 adenyl_thiF thiazole 90.4 0.44 9.6E-06 42.7 4.8 34 56-89 20-54 (202)
462 cd01078 NAD_bind_H4MPT_DH NADP 90.4 0.49 1.1E-05 42.1 5.0 34 56-89 27-61 (194)
463 cd00401 AdoHcyase S-adenosyl-L 90.3 0.45 9.7E-06 47.4 5.1 35 56-90 201-235 (413)
464 PRK12548 shikimate 5-dehydroge 90.2 0.51 1.1E-05 45.0 5.3 34 56-89 125-159 (289)
465 TIGR02853 spore_dpaA dipicolin 90.2 0.44 9.5E-06 45.3 4.8 35 56-90 150-184 (287)
466 PRK12810 gltD glutamate syntha 90.2 0.84 1.8E-05 47.0 7.2 40 473-514 427-466 (471)
467 TIGR02355 moeB molybdopterin s 90.2 0.46 1E-05 43.8 4.8 36 56-91 23-59 (240)
468 PF13478 XdhC_C: XdhC Rossmann 90.1 0.37 8E-06 39.9 3.7 31 60-90 1-31 (136)
469 TIGR00507 aroE shikimate 5-deh 90.0 0.5 1.1E-05 44.6 5.0 34 56-89 116-149 (270)
470 PRK05690 molybdopterin biosynt 89.8 0.5 1.1E-05 43.7 4.8 34 56-89 31-65 (245)
471 cd01483 E1_enzyme_family Super 89.8 0.52 1.1E-05 39.5 4.5 33 59-91 1-34 (143)
472 COG1251 NirB NAD(P)H-nitrite r 89.7 0.51 1.1E-05 49.5 5.0 52 283-338 70-121 (793)
473 PTZ00117 malate dehydrogenase; 89.7 0.57 1.2E-05 45.3 5.2 35 56-90 4-39 (319)
474 cd01339 LDH-like_MDH L-lactate 89.6 0.41 9E-06 45.9 4.2 31 60-90 1-32 (300)
475 TIGR02964 xanthine_xdhC xanthi 89.5 0.62 1.3E-05 43.1 5.1 37 55-91 98-134 (246)
476 TIGR02440 FadJ fatty oxidation 89.5 0.49 1.1E-05 51.1 5.0 35 56-90 303-338 (699)
477 PRK11154 fadJ multifunctional 89.5 0.46 1E-05 51.4 4.9 35 56-90 308-343 (708)
478 PRK08328 hypothetical protein; 89.5 0.52 1.1E-05 43.2 4.5 34 56-89 26-60 (231)
479 PLN02172 flavin-containing mon 89.5 0.43 9.4E-06 48.8 4.4 34 56-89 203-236 (461)
480 PRK02006 murD UDP-N-acetylmura 89.4 0.47 1E-05 49.3 4.8 34 57-90 7-40 (498)
481 PRK00066 ldh L-lactate dehydro 89.4 0.64 1.4E-05 44.8 5.3 34 56-89 5-40 (315)
482 PRK00258 aroE shikimate 5-dehy 89.2 0.63 1.4E-05 44.1 5.1 34 56-89 122-156 (278)
483 cd00757 ThiF_MoeB_HesA_family 89.2 0.61 1.3E-05 42.7 4.7 35 56-90 20-55 (228)
484 TIGR01505 tartro_sem_red 2-hyd 89.1 0.43 9.3E-06 45.6 3.9 32 59-90 1-32 (291)
485 cd05290 LDH_3 A subgroup of L- 89.0 0.57 1.2E-05 44.9 4.6 31 59-89 1-33 (307)
486 PRK05562 precorrin-2 dehydroge 88.9 0.73 1.6E-05 41.6 4.9 33 56-88 24-56 (223)
487 cd01065 NAD_bind_Shikimate_DH 88.9 0.78 1.7E-05 39.0 5.0 34 56-89 18-52 (155)
488 PRK09496 trkA potassium transp 88.9 0.55 1.2E-05 48.2 4.7 34 58-91 1-34 (453)
489 TIGR01809 Shik-DH-AROM shikima 88.7 0.7 1.5E-05 43.8 5.0 34 56-89 124-158 (282)
490 PRK11199 tyrA bifunctional cho 88.7 0.66 1.4E-05 46.0 5.0 36 54-89 95-131 (374)
491 PRK03803 murD UDP-N-acetylmura 88.7 0.52 1.1E-05 48.2 4.4 35 56-90 5-39 (448)
492 TIGR03169 Nterm_to_SelD pyridi 88.5 0.57 1.2E-05 46.4 4.5 48 278-330 60-107 (364)
493 PTZ00142 6-phosphogluconate de 88.5 0.52 1.1E-05 48.1 4.1 34 58-91 2-35 (470)
494 cd05312 NAD_bind_1_malic_enz N 88.4 0.63 1.4E-05 43.4 4.3 34 56-89 24-68 (279)
495 PF10727 Rossmann-like: Rossma 88.4 0.33 7.3E-06 39.5 2.2 37 54-90 7-43 (127)
496 PRK12550 shikimate 5-dehydroge 88.4 0.88 1.9E-05 42.8 5.3 33 58-90 123-156 (272)
497 PRK14027 quinate/shikimate deh 88.3 0.79 1.7E-05 43.4 5.0 33 57-89 127-160 (283)
498 KOG1335 Dihydrolipoamide dehyd 88.2 0.3 6.6E-06 46.9 2.1 39 57-95 211-249 (506)
499 PLN02695 GDP-D-mannose-3',5'-e 88.2 1 2.2E-05 44.7 6.0 37 53-89 17-54 (370)
500 KOG2495 NADH-dehydrogenase (ub 88.1 0.24 5.3E-06 48.3 1.4 34 59-92 220-267 (491)
No 1
>PLN02612 phytoene desaturase
Probab=100.00 E-value=2.7e-59 Score=482.35 Aligned_cols=513 Identities=88% Similarity=1.417 Sum_probs=425.8
Q ss_pred CCCCceeeecCCCCCCccccchhhhhhhhcCCCCCCCCCCCCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCce
Q 009635 16 GFCPSKVVCVDYPRPDIDNTSNFLEAAYLSSSFRTSPRPSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGK 95 (530)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~ 95 (530)
+.+|.++.|+++|.|....+.+|.............+......+|+|||||++||+||++|++.|++|+|+|+++++||+
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~ 131 (567)
T PLN02612 52 GRGPLQVVCVDYPRPELENTVNFLEAAALSASFRSAPRPAKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGK 131 (567)
T ss_pred CCCCceEEecCCCCCchhhHHHHHhhhhhccccccCCCCCCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCc
Confidence 45689999999999999999999876544444444444556789999999999999999999999999999999999999
Q ss_pred eeeeecCCCCEEeeeeceecCCcchHHHHHHHcCCCCCcceeccceeeecCCCCCCcccccCCCCCCCchhhHHHHHhcc
Q 009635 96 IAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNN 175 (530)
Q Consensus 96 ~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (530)
+.++...+|+.+|.|+|++.+.++++.++++++|+.....+......+.+....+.+..+.++..+|.+...+..++...
T Consensus 132 ~~s~~~~~G~~~D~G~h~~~g~~~~~~~ll~elG~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~P~~l~~~~~~l~~~ 211 (567)
T PLN02612 132 VAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILRNN 211 (567)
T ss_pred ceeeEcCCCCEEcCCceEEeCCCchHHHHHHHhCCcccceecccceEEEecCCCCceeeCcCchhcCChhhhhHHHHhcC
Confidence 99987557999999999999999999999999999887777776676665555555555555555666666677777666
Q ss_pred cCCChHHHHHhhhhhhhhhhcCcccccccCcccHHHHHHHcCCCHHHHHHHHHHHHhhcccCCCCcccHHHHHHHHHHHH
Q 009635 176 EMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFL 255 (530)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (530)
..+.+.++++....+.+.......+....++.|+.+|+++.+.++.+.++++.++...+++.+++++++...+..+..++
T Consensus 212 ~~ls~~~kl~~~~~~~~~~~~~~~~~~~~d~~Sv~e~l~~~~~~~~~~~~~~~~l~~~~~~~~p~~~S~~~~l~~l~~~l 291 (567)
T PLN02612 212 EMLTWPEKIKFAIGLLPAIVGGQAYVEAQDGLSVKEWMRKQGVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRFL 291 (567)
T ss_pred ccCCHHHHHHHHHhhhHHhcccchhhhhcCcCcHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCHHHhhHHHHHHHHHHHH
Confidence 67778888776655544333333444566789999999999999999999999999888889999999998887777776
Q ss_pred hhccCCeEEeecCCCCccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHHHhhhC
Q 009635 256 QEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQL 335 (530)
Q Consensus 256 ~~~~g~~~~~~~gg~~~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~~~~ll 335 (530)
....+....+++|+.+..+++.|.+.+++.|++|++|++|++|..++++++++|++.+|+++.||+||+|+|+..+..|+
T Consensus 292 ~~~~gs~~~~~~G~~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~~~l~~Ll 371 (567)
T PLN02612 292 QEKHGSKMAFLDGNPPERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPVDILKLLL 371 (567)
T ss_pred hccCCceEeeecCCchHHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCHHHHHHhC
Confidence 66677788888887558899999999999999999999999999866777777888889899999999999999999998
Q ss_pred CccccccHHHHHHhccCCccEEEEEEEeccccccccCccccccCCcceeeeccCcccccccCCCccEEEEEeeCccccCC
Q 009635 336 PENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTYDHLLFSRSSLLSVYADMSLTCKEYYNPNQSMLELVFAPAEEWIS 415 (530)
Q Consensus 336 ~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~~~~~~~~~~~~ 415 (530)
++...+..+.++++++.+.++.+++++|++++|...+++++...+..+++.+++..++.|.+++..++.+++.++.+|..
T Consensus 372 ~~~~~~~~~~~~l~~l~~~~v~~v~l~~dr~~~~~~~~~~~~~~~~~~~~~d~S~~~~~~~~~~~~ll~~~~~~a~~~~~ 451 (567)
T PLN02612 372 PDQWKEIPYFKKLDKLVGVPVINVHIWFDRKLKNTYDHLLFSRSPLLSVYADMSTTCKEYYDPNKSMLELVFAPAEEWIS 451 (567)
T ss_pred cchhcCcHHHHHHHhcCCCCeEEEEEEECcccCCCCCceeecCCCCceeehhhhhcchhhcCCCCeEEEEEEEcChhhhc
Confidence 87655556677788888889999999999999876666667766666777777776777777777777777777889999
Q ss_pred CChhHHHHHHHHHHHHhCCCCcccccccceEEEEEEeecCCceeecCCCCCCCCCCCCCCCCceEEecccccCCCCCcHH
Q 009635 416 CSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASME 495 (530)
Q Consensus 416 ~~~e~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~i~ 495 (530)
+++|++++.++++|+++||+....+.....+..+.+..+|.+.|.+.++...++|.+++|++|||||||++.+.|+++++
T Consensus 452 ~sdeei~e~vl~~L~~lfp~~~~~~~~~~~i~~~~~v~~P~a~~~~~pg~~~~rp~~~tPi~~l~lAGd~t~~~~~~sme 531 (567)
T PLN02612 452 RSDEDIIDATMKELAKLFPDEISADQSKAKILKYHVVKTPRSVYKTVPNCEPCRPLQRSPIEGFYLAGDYTKQKYLASME 531 (567)
T ss_pred CCHHHHHHHHHHHHHHHCCcccccccCCceEEEEEEeccCCceEEeCCCCcccCccccCccCCEEEeecceeCCchhhHH
Confidence 99999999999999999997544433345678888999999999888887777888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhHhhhcccchhhccC
Q 009635 496 GAVLSGKLCAQAIVQDYVLLAARGKGRLAEASM 528 (530)
Q Consensus 496 gA~~sg~~aA~~vl~~~~~~~~~~~~~~~~~~~ 528 (530)
||+.||++||++|+++++...++....++|++.
T Consensus 532 GAv~SG~~AA~~I~~~~~~~~~~~~~~~~~~~~ 564 (567)
T PLN02612 532 GAVLSGKLCAQSIVQDYELLAARGPRKLSEATV 564 (567)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccccccccc
Confidence 999999999999999998877777777777653
No 2
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=100.00 E-value=2.3e-48 Score=396.33 Aligned_cols=448 Identities=75% Similarity=1.229 Sum_probs=345.2
Q ss_pred eEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceeeeeecCCCCEEeeeeceecCCcchHHHHHHHcCCCCCcceec
Q 009635 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQWKE 138 (530)
Q Consensus 59 dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~~~~~~ 138 (530)
+|+|||||++||+||+.|+++|++|+|+|+++++||++.++...+|+.+|.|+|++.+.++++.++++++|+.....+..
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~~~~~~ 80 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKELNIEDRLQWKS 80 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHcCCccceeecC
Confidence 58999999999999999999999999999999999999987655789999999999988999999999999987665555
Q ss_pred cceeeecCCCCCCcccccCCCCCCCchhhHHHHHhcccCCChHHHHHhhhhhhhhhhcCcccccccCcccHHHHHHHcCC
Q 009635 139 HSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQGV 218 (530)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~ 218 (530)
....+......+....+.++. ++.+...+..++.....+++.++++....+........+.....+++|+.+|+++.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~ 159 (453)
T TIGR02731 81 HSMIFNQPDKPGTFSRFDFPD-IPAPFNGVAAILRNNDMLTWPEKIKFAIGLLPAIVRGQKYVEEQDKYTVTEWLRKQGV 159 (453)
T ss_pred CceEEecCCCCcceeeccCCC-CCCCHHHHHHHhcCcCCCCHHHHHHHHHHhHHHHhcCccchhhhccCCHHHHHHHcCC
Confidence 555554433333333333332 4444444455554444567777777665544332222233445678999999999999
Q ss_pred CHHHHHHHHHHHHhhcccCCCCcccHHHHHHHHHHHHhhccCCeEEeecCCCCccchHHHHHHHHHcCcEEEecceeeEE
Q 009635 219 PDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKI 298 (530)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~gg~~~~l~~~l~~~l~~~g~~i~~~t~V~~I 298 (530)
++.+.+.++.++...+++.+++++|+...+..+..++....+....+..|+.+..+++.|.+.++++|++|++|++|++|
T Consensus 160 ~~~~~~~~~~pl~~~~~~~~p~~~S~~~~~~~l~~~~~~~~g~~~~~~~g~~~~~l~~~l~~~l~~~g~~i~l~~~V~~I 239 (453)
T TIGR02731 160 PERVNDEVFIAMSKALNFINPDELSMTVVLTALNRFLQERHGSKMAFLDGAPPERLCQPIVDYITSRGGEVRLNSRLKEI 239 (453)
T ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHhcCCCCeeEeecCCChHHHHHHHHHHHHhcCCEEeCCCeeEEE
Confidence 99999999999999998899999999888877776665556666666766546789999999999999999999999999
Q ss_pred EecCCCCEEEEEEcCCc-----EEecCEEEEccChHHHhhhCCccccccHHHHHHhccCCccEEEEEEEeccccccccCc
Q 009635 299 ELNDDGTVKNFLLTNGN-----VIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTYDH 373 (530)
Q Consensus 299 ~~~~~g~~~~v~~~~G~-----~i~ad~VI~a~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~ 373 (530)
..++++++++|++.+|+ ++.||.||+|+|+..+.+|++.......+.+++.++.+.++.++++.|+++++... .
T Consensus 240 ~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~-~ 318 (453)
T TIGR02731 240 VLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDIFKLLLPQPWKQMPFFQKLNGLEGVPVINVHIWFDRKLTTVD-H 318 (453)
T ss_pred EECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHHHHhhCchhhhcCHHHHHhhcCCCCcEEEEEEEEccccCCCC-c
Confidence 87667777788887665 79999999999999999999765333456677777888899999999999987543 3
Q ss_pred cccccCCcceeeeccCcccccccCCCccEEEEEeeCccccCCCChhHHHHHHHHHHHHhCCCCcccccccceEEEEEEee
Q 009635 374 LLFSRSSLLSVYADMSLTCKEYYNPNQSMLELVFAPAEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVK 453 (530)
Q Consensus 374 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~~~~~~~~~~~~~~~e~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~ 453 (530)
+.+...+......+.+.......+++..++.+.+.....|...++|++++.++++|.+++|+..... ....++.+.|.+
T Consensus 319 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ee~~~~v~~~L~~~~~~~~~~~-~~~~~~~~~~~~ 397 (453)
T TIGR02731 319 LLFSRSPLLSVYADMSETCKEYADPDKSMLELVFAPAADWIGRSDEEIIDATMAELAKLFPNHIKAD-SPAKILKYKVVK 397 (453)
T ss_pred eeeeCCCcceeecchhhhChhhcCCCCeEEEEEecChhhhhcCCHHHHHHHHHHHHHHhCCcccCCC-CCceEEEEEEEE
Confidence 3444444433333444333455566667777666666777788999999999999999998631100 123567778899
Q ss_pred cCCceeecCCCCCCCCCCCCCCCCceEEecccccCCCCCcHHHHHHHHHHHHHHHH
Q 009635 454 TPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIV 509 (530)
Q Consensus 454 ~p~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~i~gA~~sg~~aA~~vl 509 (530)
.|++.|...++.....+.+++|++||||||++++..|+|+||||+.||++||++|+
T Consensus 398 ~p~a~~~~~pg~~~~~~~~~~p~~~l~~AG~~~a~~~~g~~egAi~SG~~AA~~v~ 453 (453)
T TIGR02731 398 TPRSVYKTTPGRQQYRPHQKTPIPNFFLAGDYTKQKYLASMEGAVLSGKLCAQAIV 453 (453)
T ss_pred CCCceeccCCCChhhCccccCccCCEEEeehhccCcccccHHHHHHHHHHHHHHhC
Confidence 99998766677666778889999999999999999999999999999999999873
No 3
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=100.00 E-value=6.4e-44 Score=361.68 Aligned_cols=443 Identities=37% Similarity=0.674 Sum_probs=327.9
Q ss_pred eEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceeeeeecCCCCEEeeeeceecCCcchHHHHHHHcCCCCCcceec
Q 009635 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQWKE 138 (530)
Q Consensus 59 dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~~~~~~ 138 (530)
+|+|||||++||++|+.|+++|++|+|+|+++.+||+++++....|+.+|+|.|++.+.++++.++++++|+...+.+..
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~~~lg~~~~~~~~~ 80 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCYANLFRLMKKVGAEDNLLLKE 80 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCchHHHHHHHHHcCCcccccccc
Confidence 58999999999999999999999999999999999999997656799999999999988999999999999987655443
Q ss_pred cceeeecCCCCCCcccccCCCCCCCchhhHHHHHhcccCCChHHHHHhhhhhh--hhhh---cCc---ccccccCcccHH
Q 009635 139 HSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLL--PAII---GGQ---AYVEAQDGLTVQ 210 (530)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~---~~~~~~~~~s~~ 210 (530)
....+. ...+....+.+...++.++.....+++ ...+++.++++...... +... ... ..+...+++++.
T Consensus 81 ~~~~~~--~~~~~~~~~~~~~~~~~P~~~~~~~l~-~~~ls~~dklr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 157 (474)
T TIGR02732 81 HTHTFV--NKGGDIGELDFRFATGAPFNGLKAFFT-TSQLKWVDKLRNALALGTSPIVRGLVDYDGAMKTIRDLDKISFA 157 (474)
T ss_pred ceeEEE--cCCCcccccccCCCCCCchhhhHHHhc-CCCCCHHHHHHHHHHhhhhHHHhhccccchhhhhhhhhccccHH
Confidence 333232 112222222222224444445555554 45677888776654432 1110 011 223345679999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhhcccCCCCcccHHHHHHHHHHHHhhccCCeEEeecCCCCccchHHHHHHHHHcCcEEE
Q 009635 211 EWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVR 290 (530)
Q Consensus 211 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~gg~~~~l~~~l~~~l~~~g~~i~ 290 (530)
+|+++++.++.+.+.++++++.+.++.+++++|+......+..+.....++...+++|+....+.+.+.+.++++|++|+
T Consensus 158 ~~l~~~~~~~~~~~~~~~Pll~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~s~~~~~~g~~~~~l~~pl~~~L~~~Gg~i~ 237 (474)
T TIGR02732 158 EWFLSHGGSLGSIKRMWDPIAYALGFIDCENISARCMLTIFMLFAAKTEASKLRMLKGSPDKYLTKPILEYIEARGGKFH 237 (474)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCcceeeeecCCcchhHHHHHHHHHHHCCCEEE
Confidence 99999988888899999999999999999999998776655544444666778888877444477889999999999999
Q ss_pred ecceeeEEEecC--CC--CEEEEEEcCC---cEEecCEEEEccChHHHhhhCCccccccHHHHHHhccCCccEEEEEEEe
Q 009635 291 LNSRVQKIELND--DG--TVKNFLLTNG---NVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWF 363 (530)
Q Consensus 291 ~~t~V~~I~~~~--~g--~~~~v~~~~G---~~i~ad~VI~a~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~v~~~~ 363 (530)
++++|++|..++ ++ ++++|++.+| +++.||+||+|+|++.+..|+++..........+.++.+.++..++++|
T Consensus 238 ~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~Ll~~~~~~~~~~~~l~~l~~~pi~~v~l~~ 317 (474)
T TIGR02732 238 LRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKRLLPQEWRQFEEFDNIYKLDAVPVATVQLRY 317 (474)
T ss_pred CCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHhhCChhhhcCHHHhhHhcCCCCCeEEEEEEe
Confidence 999999998743 23 2666777544 4699999999999999999998854434566788889999999999999
Q ss_pred ccccccc--------------cCccccccCCcceeeeccCcccc-cccCCCc-cEEEEEeeCccccCCCChhHHHHHHHH
Q 009635 364 DRKLKNT--------------YDHLLFSRSSLLSVYADMSLTCK-EYYNPNQ-SMLELVFAPAEEWISCSDSEIIDATMK 427 (530)
Q Consensus 364 ~~~~~~~--------------~~~~~~~~~~~~~~~~~~s~~~~-~~~~~~~-~v~~~~~~~~~~~~~~~~e~~~~~~~~ 427 (530)
+++.-.. .+++.+..+....++.+.+...+ .|.+++. .++...+..+..+..+++|++++.+++
T Consensus 318 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 397 (474)
T TIGR02732 318 DGWVTELQDLAKRKQLKRAAGLDNLLYTADADFSCFADLALTSPDDYYKEGQGSLLQCVLTPGDPWMPESNEEIAKRVDK 397 (474)
T ss_pred ccccccccchhhhhcccccccccccccccCccceeeehhhccCHHHHhccCCCeEEEEEEeChhhhcCCCHHHHHHHHHH
Confidence 9765321 11111111111111223222222 3443333 445555666667778999999999999
Q ss_pred HHHHhCCCCcccccccceEEEEEEeecCCceeecCCCCCCCCCCCCCCCCceEEecccccCCCCCcHHHHHHHHHHHHHH
Q 009635 428 ELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQA 507 (530)
Q Consensus 428 ~l~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~i~gA~~sg~~aA~~ 507 (530)
+|++++|.... ..+......+.+++.|...||+...+|..+++++|||+||||+.+.|+.++|||+.||++||+.
T Consensus 398 ~L~~~~p~~~~-----~~~~~~~v~~~~~a~~~~~pg~~~~~P~~~t~~~~l~lAGD~t~~~~pas~egAv~sG~~aA~~ 472 (474)
T TIGR02732 398 QVRALFPSSKN-----LKLTWSSVVKLAQSLYREAPGMDPFRPDQKTPISNFFLAGSYTQQDYIDSMEGATLSGRQAAAA 472 (474)
T ss_pred HHHHhCccccC-----CceeEEEEEEecCceeccCCCCcccCCCCCCCCCCeEEeccccccCchHHHhHHHHHHHHHHHH
Confidence 99999996322 2355557889999999999998888899999999999999999999999999999999999998
Q ss_pred HH
Q 009635 508 IV 509 (530)
Q Consensus 508 vl 509 (530)
|+
T Consensus 473 i~ 474 (474)
T TIGR02732 473 IL 474 (474)
T ss_pred hC
Confidence 74
No 4
>PLN02487 zeta-carotene desaturase
Probab=100.00 E-value=3.5e-43 Score=357.51 Aligned_cols=457 Identities=34% Similarity=0.610 Sum_probs=338.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceeeeeecCCCCEEeeeeceecCCcchHHHHHHHcCCCCCcc
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQ 135 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~~~ 135 (530)
+.++|+|||||++||++|+.|.++|++|+|+|+++.+||++.++.+..|+.+|+|.|++.+.++++.++++++|+.....
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~LGl~~~~~ 153 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKVGADENLL 153 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhcCCccccc
Confidence 34699999999999999999999999999999999999999998656799999999999998999999999999987655
Q ss_pred eeccceeeecCCCCCCcccccCCCCCCCchhhHHHHHhcccCCChHHHHHhhhhhh--hh---hhc---CcccccccCcc
Q 009635 136 WKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLL--PA---IIG---GQAYVEAQDGL 207 (530)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~---~~~~~~~~~~~ 207 (530)
+......+. ...+....+.+.-.++.+...+..++. ...+++.++++...... +. ... ....+...++.
T Consensus 154 ~~~~~~~~~--~~~g~~~~~~~~~p~~~pl~~~~~~l~-~~~Ls~~dklr~~~~l~~~~~~~al~~~~~~~~~~~~~d~~ 230 (569)
T PLN02487 154 VKDHTHTFV--NKGGDVGELDFRFPVGAPLHGIKAFLT-TNQLEPYDKARNALALATSPVVRALVDPDGAMRDIRDLDDI 230 (569)
T ss_pred ccccceeEE--ecCCEEeeeccCCCCCchhhhHHHHHc-CCCCCHHHHHhhcccccccchhhhccCccccccccccccCC
Confidence 433222221 122222212111113333333444443 34566667666543331 10 000 01223345679
Q ss_pred cHHHHHHHcCCCHHHHHHHHHHHHhhcccCCCCcccHHHHHHHHHHHHhhccCCeEEeecCCCCccchHHHHHHHHHcCc
Q 009635 208 TVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGG 287 (530)
Q Consensus 208 s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~gg~~~~l~~~l~~~l~~~g~ 287 (530)
++.+|+++++.+.++.+.+++++....+..+++++|+......+..+.....+....++.|+....|++.+++.++++|+
T Consensus 231 sv~~~l~r~~g~~~~~~~l~dPll~~~~~~~~d~~SA~~~~~vl~~~~~~~~~~~l~~~~Gg~~~~l~~pl~~~L~~~Gg 310 (569)
T PLN02487 231 SFSDWFTSHGGTRMSIKRMWDPIAYALGFIDCDNISARCMLTIFSLFATKTEASLLRMLKGSPDVRLSGPIAKYITDRGG 310 (569)
T ss_pred cHHHHHHHhCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhcCCcceeeecCCCchHHHHHHHHHHHHHcCC
Confidence 99999999988888999999999999999999999998877766433223334568888888333699999999999999
Q ss_pred EEEecceeeEEEecC--CC--CEEEEEE---cCCcEEecCEEEEccChHHHhhhCCccccccHHHHHHhccCCccEEEEE
Q 009635 288 EVRLNSRVQKIELND--DG--TVKNFLL---TNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIH 360 (530)
Q Consensus 288 ~i~~~t~V~~I~~~~--~g--~~~~v~~---~~G~~i~ad~VI~a~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~v~ 360 (530)
+|+++++|.+|..+. ++ ++++|++ .+++++.||.||+|+|.+.+.+|+|+..........+.++.+.+++.++
T Consensus 311 ~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~Llp~~~~~~~~~~~l~~L~~~pi~tv~ 390 (569)
T PLN02487 311 RFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIKRLLPEQWREYEFFDNIYKLVGVPVVTVQ 390 (569)
T ss_pred EEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHHHhCCchhhccHHHhHHhcCCCeeEEEEE
Confidence 999999999999852 33 3678887 3455799999999999999999999875444557788889899999999
Q ss_pred EEecccccccc--------------CccccccCCcceeeeccCcccc-cc-cCCCccEEEEEeeCccccCCCChhHHHHH
Q 009635 361 IWFDRKLKNTY--------------DHLLFSRSSLLSVYADMSLTCK-EY-YNPNQSMLELVFAPAEEWISCSDSEIIDA 424 (530)
Q Consensus 361 ~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~s~~~~-~~-~~~~~~v~~~~~~~~~~~~~~~~e~~~~~ 424 (530)
++||+++-... +++.+..+....++.+.....+ .+ .+.....+.+++.+.+.+..+++|++++.
T Consensus 391 L~~d~~v~~~~~~~~~r~l~~~~g~~~~~~~~~~~~~f~~di~l~~~~~~~~~~~g~~l~~vis~a~~~~~~~~~ei~~~ 470 (569)
T PLN02487 391 LRYNGWVTEMQDLELSRQLRRAAGLDNLLYSADADFSCFADLALTSPEDYYKEGEGSLIQAVLTPGDPYMPLSNDKIVEK 470 (569)
T ss_pred EEecccccccccccccccccccccccccccccCCCcceEeeeecCCHHHHcccCCceEEEEEEcCCccccCCCHHHHHHH
Confidence 99998753211 1111111212222223221111 12 22334667777777788889999999999
Q ss_pred HHHHHHHhCCCCcccccccceEEEEEEeecCCceeecCCCCCCCCCCCCCCCCceEEecccccCCCCCcHHHHHHHHHHH
Q 009635 425 TMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLC 504 (530)
Q Consensus 425 ~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~i~gA~~sg~~a 504 (530)
++++|.+++|.... ..+...+....+.+.|...||....+|..+|+++|||+||||+.+.|+.++|||+.||.+|
T Consensus 471 ~~~~L~~~~p~~~~-----~~v~~~~vv~~~~at~~~~pg~~~~RP~~~T~~~nl~LAGD~t~~~yPat~EgAv~SG~~A 545 (569)
T PLN02487 471 VHKQVLELFPSSRG-----LEVTWSSVVKIGQSLYREAPGMDPFRPDQKTPISNFFLAGSYTKQDYIDSMEGATLSGRQA 545 (569)
T ss_pred HHHHHHHhCccccc-----CceEEEEEEEccCceeccCCCccccCCCCCCCCCCEEEeCcccccCCcchHHHHHHHHHHH
Confidence 99999999997432 1355567899999999999998888899999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHhhhcc
Q 009635 505 AQAIVQDYVLLAARGK 520 (530)
Q Consensus 505 A~~vl~~~~~~~~~~~ 520 (530)
|+.|++......+-|+
T Consensus 546 A~~i~~~~~~~~~~~~ 561 (569)
T PLN02487 546 AAYICEAGEELAGLRK 561 (569)
T ss_pred HHHHHHHhhhhhhhhh
Confidence 9999998876655444
No 5
>PRK07233 hypothetical protein; Provisional
Probab=100.00 E-value=9.5e-39 Score=325.56 Aligned_cols=424 Identities=25% Similarity=0.356 Sum_probs=294.4
Q ss_pred eEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceeeeeecCCCCEEeeeeceecCCcchHHHHHHHcCCCCCcceec
Q 009635 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQWKE 138 (530)
Q Consensus 59 dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~~~~~~ 138 (530)
+|||||||++||+||+.|+++|++|+|||+++++||++.++. .+|+.+|.|+|++.+.++.+.++++++|+.....+..
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~-~~g~~~d~g~~~~~~~~~~~~~l~~~lg~~~~~~~~~ 79 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFE-FGGLPIERFYHHIFKSDEALLELLDELGLEDKLRWRE 79 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeec-cCCcchhhhhhhhccccHHHHHHHHHcCCCCceeecc
Confidence 699999999999999999999999999999999999999876 5689999999999888889999999999976654433
Q ss_pred cceeeecCCCCCCcccccCCCCCCCchhhHHHHHhcccCCChHHHHHhhhhhhhhhhcCcccccccCcccHHHHHHHcCC
Q 009635 139 HSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQGV 218 (530)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~ 218 (530)
....+... +... .+ .....++.. ..+...++++......... ......+.+..++.+|+.+. .
T Consensus 80 ~~~~~~~~---~~~~--~~--------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~s~~~~l~~~-~ 142 (434)
T PRK07233 80 TKTGYYVD---GKLY--PL--------GTPLELLRF-PHLSLIDKFRLGLLTLLAR--RIKDWRALDKVPAEEWLRRW-S 142 (434)
T ss_pred CceEEEEC---CeEe--cC--------CCHHHHHcC-CCCCHHHHHHhHHHHHhhh--hcccccccccccHHHHHHHh-c
Confidence 22222211 1110 00 111111111 1223333333322221111 01112344668999999987 4
Q ss_pred CHHHHHHHHHHHHhhcccCCCCcccHHHHHHHHHHHHhhc---cCCeEEeecCCCCccchHHHHHHHHHcCcEEEeccee
Q 009635 219 PDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEK---HGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRV 295 (530)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~gg~~~~l~~~l~~~l~~~g~~i~~~t~V 295 (530)
.+...+.++.++....++.+++++++......+....... ....+.++.|| +..+++.|.+.+++.|++|+++++|
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gG-~~~l~~~l~~~l~~~g~~v~~~~~V 221 (434)
T PRK07233 143 GEGVYEVFWEPLLESKFGDYADDVSAAWLWSRIKRRGNRRYSLFGEKLGYLEGG-FATLIDALAEAIEARGGEIRLGTPV 221 (434)
T ss_pred CHHHHHHHHHHHHhcccCCCccccCHHHHHHHHhhhhccccccCCceEeccCCC-HHHHHHHHHHHHHhcCceEEeCCCe
Confidence 6677788999999999999999999876655443321111 12346677777 7999999999999999999999999
Q ss_pred eEEEecCCCCEEEEEEcCCcEEecCEEEEccChHHHhhhCCccccccHHHHHHhccCCccEEEEEEEeccccccccCccc
Q 009635 296 QKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTYDHLL 375 (530)
Q Consensus 296 ~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~ 375 (530)
++|+.+ ++.++.+. .+|++++||+||+|+|+..+..++++. +....++++++.+.+..++++.++++.+..+ +.
T Consensus 222 ~~i~~~-~~~~~~~~-~~~~~~~ad~vI~a~p~~~~~~ll~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~ 295 (434)
T PRK07233 222 TSVVID-GGGVTGVE-VDGEEEDFDAVISTAPPPILARLVPDL--PADVLARLRRIDYQGVVCMVLKLRRPLTDYY--WL 295 (434)
T ss_pred eEEEEc-CCceEEEE-eCCceEECCEEEECCCHHHHHhhcCCC--cHHHHhhhcccCccceEEEEEEecCCCCCCc--ee
Confidence 999974 44444444 566689999999999999999998653 2344567778888899999999999864321 11
Q ss_pred c-cc--CCcceeeeccCcccccccCCCccEEE-EEeeCc-cccCCCChhHHHHHHHHHHHHhCCCCcccccccceEEEEE
Q 009635 376 F-SR--SSLLSVYADMSLTCKEYYNPNQSMLE-LVFAPA-EEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYH 450 (530)
Q Consensus 376 ~-~~--~~~~~~~~~~s~~~~~~~~~~~~v~~-~~~~~~-~~~~~~~~e~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~ 450 (530)
. .. .++..++ ..+..++...+++..++. ..+.+. ..+...+++++++.++++|.+++|+... ..+....
T Consensus 296 ~~~~~~~~~~~~~-~~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~p~~~~-----~~~~~~~ 369 (434)
T PRK07233 296 NINDPGAPFGGVI-EHTNLVPPERYGGEHLVYLPKYLPGDHPLWQMSDEELLDRFLSYLRKMFPDFDR-----DDVRAVR 369 (434)
T ss_pred eecCCCCCcceEE-EecccCCccccCCceEEEEeeecCCCChhhcCCHHHHHHHHHHHHHHhCCCCCh-----hheeeEE
Confidence 1 12 2333332 233334444445555432 233332 2233568899999999999999996321 2355667
Q ss_pred EeecCCceeecCCCCCCCCCCCCCCCCceEEecccccCCCCCcHHHHHHHHHHHHHHHHHhhh
Q 009635 451 VVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 513 (530)
Q Consensus 451 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~i~gA~~sg~~aA~~vl~~~~ 513 (530)
+.+++++.+.+.+++....+.+.++++||||||++....+.++|++|+.||++||++|+..++
T Consensus 370 ~~r~~~a~~~~~~g~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~~Ai~sG~~aA~~i~~~~~ 432 (434)
T PRK07233 370 ISRAPYAQPIYEPGYLDKIPPYDTPIEGLYLAGMSQIYPEDRSINGSVRAGRRVAREILEDRR 432 (434)
T ss_pred EEEeccccccccCchhhcCCCcccCcCCEEEeCCcccCCccCchhHHHHHHHHHHHHHhhhhc
Confidence 778888776666776667777788899999999954433345899999999999999988764
No 6
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=4e-39 Score=311.24 Aligned_cols=447 Identities=39% Similarity=0.605 Sum_probs=362.8
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceeeeeecCCCCEEeeeeceecCCcchHHHHHHHcCCCCCccee
Q 009635 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQWK 137 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~~~~~ 137 (530)
++|+|+|||+|||+||++|+++|++|+|+|+++++||.+.++.+.+|.+.|+|.|+|.+.|.++.+++++++......+.
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~dg~~~E~glh~f~~~Y~n~~~ll~~~~~~~~~~~~ 80 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSDGNHVEHGLHVFFGCYYNLLTLLKELPIEDRLQLR 80 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecCCCCeeeeeeEEechhHHHHHHHhhhCCchheeehH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999887777
Q ss_pred ccceee-ecCCCCCCcccccCCCCCCCchhhHHHHHhcccCCChHHHHHhhhhhhhhhhcCcccccccCcccHHHHHHHc
Q 009635 138 EHSMIF-AMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQ 216 (530)
Q Consensus 138 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~ 216 (530)
+....+ ..+..++.+.++.... .|.+...+..++.. ..+...++++.+..+..........+.+.++.++.+|+++.
T Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~-~p~p~~~~~~~l~~-~~~~~~~~~~~~~~l~~~~~g~~~~~~eld~~s~~d~l~~~ 158 (485)
T COG3349 81 EHTKTFVGSGTRPGAIGRFARPD-APQPTNGLKAFLRL-PQLPRREKIRFVLRLGDAPIGADRSLRELDKISFADWLKEK 158 (485)
T ss_pred hhhhhhcccCCCCCcccccccCC-CCCcchhhhhhhhc-cccCHHHHhHHhhccccccchhHHHHHHHhcccHHHHHHHh
Confidence 766665 6666777776666665 44555555555554 36677788777766665544225567788999999999999
Q ss_pred CCCHHHHHHHHHHHHhhcccCCCCcccHHHHHHHHHHHHhhc-cCCeEEeecCCCCccchHHHHHHHHHcCcEEEeccee
Q 009635 217 GVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEK-HGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRV 295 (530)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~gg~~~~l~~~l~~~l~~~g~~i~~~t~V 295 (530)
+.......+.+.++.....+..++.++.......+..++... .++.....+|+..+.++..+.+.+.+.|.+++.+.+|
T Consensus 159 g~~~~~~k~~~~~~~~~l~f~~~e~~sa~~~lt~~~~~~~~~~~~~i~~~~~g~~~E~~~~p~~~yi~~~G~~v~~~~pv 238 (485)
T COG3349 159 GAREGAYKAAFAPIALALTFIDPEGCSARFFLTILNLFLIVTLEASILRNLRGSPDEVLLQPWTEYIPERGRKVHADYPV 238 (485)
T ss_pred CCCchhHHHHHHHHHHhhcccCcccCcchhHHHHHHHHHHhccCcchhhhhcCCCcceeeehhhhhccccCceeecccee
Confidence 999888999999999998899999999987777777666555 6667778888888999999999999999999999999
Q ss_pred eEEEecC---CCCEEEEEEcCC---cEEecCEEEEccChHHHhhhCCccccccHHHHHHhccCCccEEEEEEEecccccc
Q 009635 296 QKIELND---DGTVKNFLLTNG---NVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKN 369 (530)
Q Consensus 296 ~~I~~~~---~g~~~~v~~~~G---~~i~ad~VI~a~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~ 369 (530)
+.|..+. +.+++++... + +.+.++.|+.+.+...+...+|..+.+....+.+..+...++.+++++|+...+.
T Consensus 239 ~~l~l~~~~~~~~~~g~~~~-~~~~e~~~~~~~~~~~~v~~~~~~~ps~W~~~~~f~~ly~l~~~p~~~~~l~~~~~~~~ 317 (485)
T COG3349 239 KELDLDGARGLAKVTGGDVT-GPEQEQQAALAVVDAFAVQRFKRDLPSEWPKWSNFDGLYGLRLVPVITLHLRFDGWVTE 317 (485)
T ss_pred eeeeccccccccceEeeeec-CcceEeeehhhhhcccccchHhhcCcccccccccccccccccccceeEEEEeecCcccc
Confidence 9998643 4456666655 4 2456667777788888888888888766666777788889999999999965432
Q ss_pred c--------cCccccccCCcceeeeccCcccccccCCCc-cEEEEEeeCccccCCCChhHHHHHHHHHHHHhCCCCcccc
Q 009635 370 T--------YDHLLFSRSSLLSVYADMSLTCKEYYNPNQ-SMLELVFAPAEEWISCSDSEIIDATMKELAKLFPDEISAD 440 (530)
Q Consensus 370 ~--------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~e~~~~~~~~~l~~~~p~~~~~~ 440 (530)
. .++..+...+..+.+.++...++.|..++. ..+.....+...|...+++++.+.+.+++...+|......
T Consensus 318 ~~~~~~~~~~dn~~~s~~~l~~~~ad~~~~~~~y~e~g~~~~le~~~~~~~~~~~~~~~~~~a~~e~~~~~~vP~~~~a~ 397 (485)
T COG3349 318 LTDRNQQFGIDNLLWSDDTLGGVVADLALTSPDYVEPGAGCYLEKVLAPGWPFLFESDEAIVATFEKELYELVPSLAEAK 397 (485)
T ss_pred ccccchhhhhhccccccccCCceeeeccccchhhccccchhhhhhhhcccccccccchhhHHHHHHHHhhhcCCchhccc
Confidence 1 233335556666777777666667777765 3334456667788888899999999999999888754432
Q ss_pred cccceEEEEEEeecCCceeecCCCCCCCCCCCCCCCCceEEecccccCCCCCcHHHHHHHHHHHHHHHHHhhh
Q 009635 441 QSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 513 (530)
Q Consensus 441 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~i~gA~~sg~~aA~~vl~~~~ 513 (530)
...+....+.+.+...|+...++|...+|++|++++||++...+.++||+|..||++||+.|++.+.
T Consensus 398 ------~~~~~i~~~q~~~~~~pgs~~~rP~~~Tpv~N~~laGd~~~~~~~~smE~A~~sGl~AA~~v~~~~~ 464 (485)
T COG3349 398 ------LKSSVLVNQQSLYGLAPGSYHYRPEQKTPIPNLLLAGDYTKQPYLGSMEGATLSGLLAANAILDNLG 464 (485)
T ss_pred ------ccccceeccccccccCCCccccCCCCCCCccchhhccceeecCCcCccchhhhhHHHHHHHHHHhhh
Confidence 4567788899999999999999999999999999999999888889999999999999999998766
No 7
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=100.00 E-value=9.7e-38 Score=319.20 Aligned_cols=421 Identities=16% Similarity=0.203 Sum_probs=281.3
Q ss_pred CeEEEECCChHHHHHHHHHHHC------CCcEEEEecCcccCceeeeeecCCCCEEeeeeceecCCcchHHHHHHHcCCC
Q 009635 58 LKVVIAGAGLAGLSTAKYLADA------GHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGIN 131 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~------G~~V~vlEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~ 131 (530)
.+|+|||||+|||+||+.|++. |++|+|||+++++||++.+.. .+|+.+|.|+|++...++.+.++++++|++
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~-~~g~~~e~G~~~i~~~~~~~~~l~~~lgl~ 80 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVE-EKDFIMESGADSIVARNEHVMPLVKDLNLE 80 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEe-eCCEEEecCcHHHhcCCHHHHHHHHHcCCc
Confidence 4799999999999999999986 379999999999999999976 568999999999988888899999999998
Q ss_pred CCcceeccceeeecCCCCCCcccccCCC--CCCCchhhHHHHHhcccCCChHHHHHhhhhhhhhhhcCcccccccCcccH
Q 009635 132 DRLQWKEHSMIFAMPNKPGEFSRFDFPE--VLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTV 209 (530)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 209 (530)
....+......+.+. .+....+.... .+|.. +..++ ....+++..+++......... ....+++|+
T Consensus 81 ~~~~~~~~~~~~~~~--~~~~~~~p~~~~~~~p~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~------~~~~~~~sv 148 (463)
T PRK12416 81 EEMVYNETGISYIYS--DNTLHPIPSDTIFGIPMS---VESLF-SSTLVSTKGKIVALKDFITKN------KEFTKDTSL 148 (463)
T ss_pred cceecCCCCceEEEE--CCeEEECCCCCeecCCCC---hHHhh-cCCcCCHHHHHHhhhhhccCC------CCCCCCCCH
Confidence 665433321111111 11111111111 11111 11222 123334444444433332211 012357899
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhhcccCCCCcccHHHHHHHHHHHHh-----------------hccCCeEEeecCCCCc
Q 009635 210 QEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQ-----------------EKHGSKMAFLDGNPPE 272 (530)
Q Consensus 210 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~g~~~~~~~gg~~~ 272 (530)
.+|+++. +..++.+.++.++...++..++++++....+..+..+.. ...+..+.++.|| +.
T Consensus 149 ~~~l~~~-~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~gG-~~ 226 (463)
T PRK12416 149 ALFLESF-LGKELVERQIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENKKQFQSAGNKKFVSFKGG-LS 226 (463)
T ss_pred HHHHHHh-cCHHHHHHHHHHHhcccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHhhhccCCCCCCceEeeCCC-HH
Confidence 9999986 677888899999999999999999987643333211110 0112335566676 78
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHHHhhhCCccccccHHHHHHhccC
Q 009635 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLV 352 (530)
Q Consensus 273 ~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~~~~ll~~~~~~~~~~~~l~~~~ 352 (530)
.|+++|++.+.+ ++|+++++|++|+.++++ +.|++.+|+++.||+||+|+|++.+..|+++.. ....+.++.
T Consensus 227 ~l~~~l~~~l~~--~~i~~~~~V~~I~~~~~~--~~v~~~~g~~~~ad~VI~a~p~~~~~~ll~~~~----l~~~~~~~~ 298 (463)
T PRK12416 227 TIIDRLEEVLTE--TVVKKGAVTTAVSKQGDR--YEISFANHESIQADYVVLAAPHDIAETLLQSNE----LNEQFHTFK 298 (463)
T ss_pred HHHHHHHHhccc--ccEEcCCEEEEEEEcCCE--EEEEECCCCEEEeCEEEECCCHHHHHhhcCCcc----hhHHHhcCC
Confidence 999999988854 689999999999985544 357788888899999999999999999987542 234567788
Q ss_pred CccEEEEEEEeccccccc-cCc--ccccc-CCcc--eeeeccCcccccccCCCccEEEEEeeC----ccccCCCChhHHH
Q 009635 353 GVPVINIHIWFDRKLKNT-YDH--LLFSR-SSLL--SVYADMSLTCKEYYNPNQSMLELVFAP----AEEWISCSDSEII 422 (530)
Q Consensus 353 ~~~~~~v~~~~~~~~~~~-~~~--~~~~~-~~~~--~~~~~~s~~~~~~~~~~~~v~~~~~~~----~~~~~~~~~e~~~ 422 (530)
+.++.++++.|++++|.. ... ++.++ .+.. +.. ..+..++...+++..++.+++.. ...+.++++|++.
T Consensus 299 ~~~~~~v~l~~~~~~~~~~~~g~G~l~~~~~~~~~~~~~-~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~dee~~ 377 (463)
T PRK12416 299 NSSLISIYLGFDILDEQLPADGTGFIVTENSDLHCDACT-WTSRKWKHTSGKQKLLVRMFYKSTNPVYETIKNYSEEELV 377 (463)
T ss_pred CCceEEEEEEechhhcCCCCCceEEEeeCCCCCeEEEEE-eecCCCCCcCCCCeEEEEEEeCCCCCCchhhhcCCHHHHH
Confidence 889999999999875421 111 22222 2221 111 12222333334444455444431 2446678999999
Q ss_pred HHHHHHHHHhCCCCcccccccceEEEEEEeecCCceeecCCCCCCC----CCCCCCCCCceEEecccccCCCCCcHHHHH
Q 009635 423 DATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPC----RPLQRSPVEGFYLAGDYTKQKYLASMEGAV 498 (530)
Q Consensus 423 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~----~~~~~~~~~~l~~aG~~~~~~~~~~i~gA~ 498 (530)
+.++++|++++|.... +..+...+|..+.+.|..+.... ...+..+.++||+||+++.. .+|++|+
T Consensus 378 ~~~~~~L~~~lG~~~~-------p~~~~v~~W~~a~P~y~~~~~~~~~~~~~~l~~~~~~l~~aG~~~~g---~~i~~ai 447 (463)
T PRK12416 378 RVALYDIEKSLGIKGE-------PEVVEVTNWKDLMPKYHLEHNQAVQSLQEKMMNLYPNIYLAGASYYG---VGIGACI 447 (463)
T ss_pred HHHHHHHHHHhCCCCC-------ceEEEEEEccccCCCcCcCHHHHHHHHHHHHHhhCCCeEEecccccc---ccHHHHH
Confidence 9999999999985321 33456677777666555442111 12233456899999999886 4799999
Q ss_pred HHHHHHHHHHHHhh
Q 009635 499 LSGKLCAQAIVQDY 512 (530)
Q Consensus 499 ~sg~~aA~~vl~~~ 512 (530)
.||+++|++|++.+
T Consensus 448 ~sg~~aA~~i~~~~ 461 (463)
T PRK12416 448 GNGKNTANEIIATL 461 (463)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999775
No 8
>PLN02268 probable polyamine oxidase
Probab=100.00 E-value=8.2e-38 Score=317.37 Aligned_cols=413 Identities=20% Similarity=0.240 Sum_probs=251.6
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceeeeeecCCCCEEeeeeceecCC--cchHHHHHHHcCCCCCcc
Q 009635 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGA--YPNIQNLFGELGINDRLQ 135 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~~--~~~~~~l~~~lg~~~~~~ 135 (530)
.+|+|||||+|||+||+.|.+.|++|+||||++++||++.+.. ..|+.+|.|++++++. ...+.++++++|++....
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~-~~g~~~d~G~~~i~~~~~~~~~~~l~~~lgl~~~~~ 79 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDY-SFGFPVDMGASWLHGVCNENPLAPLIGRLGLPLYRT 79 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecC-cCCcccCCCCeeEeccCCCchHHHHHHHhCCceEec
Confidence 4899999999999999999999999999999999999999864 5688999999999753 334889999999964321
Q ss_pred eeccceeeecCCCCCCcccccCCCCCCCchhhHHHHHhcccCCChHHHHHhhhhhhhhhhcCcccccccCcccHHHHHHH
Q 009635 136 WKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRK 215 (530)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~ 215 (530)
......++. ........+. ....+.+......+.. .+..+........ ....+++|+.+|+++
T Consensus 80 ~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~-----~~~~~~~s~~~~~~~ 142 (435)
T PLN02268 80 SGDNSVLYD--HDLESYALFD-MDGNQVPQELVTKVGE---------TFERILEETEKVR-----DEHEEDMSLLQAISI 142 (435)
T ss_pred cCCcccccc--ccccccceec-CCCCCCCHHHHHHHHH---------HHHHHHHHHHHHH-----hccCCCcCHHHHHHH
Confidence 111111110 0001000000 0000111111111100 0000000000000 012346788887755
Q ss_pred cCC------CHHHHHHHHHHH---HhhcccCCCCcccHHHHHHHHHHHHhhccCCeEEeecCCCCccchHHHHHHHHHcC
Q 009635 216 QGV------PDRVTTEVFIAM---SKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLG 286 (530)
Q Consensus 216 ~~~------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~gg~~~~l~~~l~~~l~~~g 286 (530)
... ...+.+.++..+ ...+++.++++++...... .....|... ++.+| +..+++.|.+ +
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~-----~~~~~g~~~-~~~~G-~~~l~~~l~~-----~ 210 (435)
T PLN02268 143 VLERHPELRLEGLAHEVLQWYLCRMEGWFAADADTISLKSWDQ-----EELLEGGHG-LMVRG-YDPVINTLAK-----G 210 (435)
T ss_pred HhhhCcccccchHHHHHHHHHHHHHHHHhCCChHhCchhhcCC-----ccccCCCce-eecCC-HHHHHHHHhc-----c
Confidence 310 011333333322 2345566777777643110 000112111 23333 4455544432 5
Q ss_pred cEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHHHhhh--CCccccccHHHHHHhccCCccEEEEEEEec
Q 009635 287 GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQ--LPENWKEMAYFKRLEKLVGVPVINIHIWFD 364 (530)
Q Consensus 287 ~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~~~~l--l~~~~~~~~~~~~l~~~~~~~~~~v~~~~~ 364 (530)
++|++|++|++|...+++ +.|++.+|+++.||+||+|+|+..++.. ...+..+....++++++.+.++.|+.+.|+
T Consensus 211 ~~i~~~~~V~~i~~~~~~--v~v~~~~g~~~~ad~VIva~P~~~l~~~~i~f~p~lp~~~~~ai~~~~~g~~~Kv~l~f~ 288 (435)
T PLN02268 211 LDIRLNHRVTKIVRRYNG--VKVTVEDGTTFVADAAIIAVPLGVLKANIIKFEPELPEWKEEAISDLGVGIENKIALHFD 288 (435)
T ss_pred CceeCCCeeEEEEEcCCc--EEEEECCCcEEEcCEEEEecCHHHHhcCcceecCCCCHHHHHHHHhCCccceeEEEEEeC
Confidence 789999999999986555 3588888888999999999999998753 222234556678888999999999999999
Q ss_pred cccccccCcccc--ccCCcceeeeccCcccccccCCCccEEEEEeeC--ccccCCCChhHHHHHHHHHHHHhCCCCcccc
Q 009635 365 RKLKNTYDHLLF--SRSSLLSVYADMSLTCKEYYNPNQSMLELVFAP--AEEWISCSDSEIIDATMKELAKLFPDEISAD 440 (530)
Q Consensus 365 ~~~~~~~~~~~~--~~~~~~~~~~~~s~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~e~~~~~~~~~l~~~~p~~~~~~ 440 (530)
++||+..+...+ +.......+.+. ....+..++.++..+ +..+..++++++++.++++|.+++|....+
T Consensus 289 ~~fw~~~~~~g~~~~~~~~~~~~~~~------~~~~g~~~l~~~~~g~~a~~~~~~~~~e~~~~v~~~L~~~~~~~~~p- 361 (435)
T PLN02268 289 SVFWPNVEFLGVVAPTSYGCSYFLNL------HKATGHPVLVYMPAGRLARDIEKLSDEAAANFAMSQLKKMLPDATEP- 361 (435)
T ss_pred CCCCCCCceeeccCCCCCCceEEEec------ccCCCCCEEEEEeccHHHHHHHhCCHHHHHHHHHHHHHHHcCCCCCc-
Confidence 999975322211 111111111111 112344455444433 255678899999999999999999853222
Q ss_pred cccceEEEEEEeecCCce--eec-CCCC-CCCCCCCCCCCCceEEecccccCCCCCcHHHHHHHHHHHHHHHHHhh
Q 009635 441 QSKAKIVKYHVVKTPRSV--YKT-IPNC-EPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDY 512 (530)
Q Consensus 441 ~~~~~~~~~~~~~~p~~~--~~~-~~~~-~~~~~~~~~~~~~l~~aG~~~~~~~~~~i~gA~~sg~~aA~~vl~~~ 512 (530)
..+..++|...|++. |.+ .++. ....+.+++|+++|||||++++..|+|+||||++||++||++|++.|
T Consensus 362 ---~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~l~~p~~~l~FAGe~ts~~~~g~~eGA~~sG~raA~~v~~~l 434 (435)
T PLN02268 362 ---VQYLVSRWGSDPNSLGCYSYDLVGKPHDLYERLRAPVDNLFFAGEATSSDFPGSVHGAYSTGVMAAEECRMRL 434 (435)
T ss_pred ---cEEEecccCCCCCCCccCCCCCCCCCHHHHHHHhCCCCCeEEeeccCCCcccccHHHHHHHHHHHHHHHHHhh
Confidence 223445666666643 433 2342 22334567889999999999999899999999999999999999764
No 9
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=100.00 E-value=9.2e-37 Score=312.69 Aligned_cols=419 Identities=20% Similarity=0.300 Sum_probs=286.6
Q ss_pred CCeEEEECCChHHHHHHHHHHHC----CCcEEEEecCcccCceeeeeecCCCCEEeeeeceecCCcchHHHHHHHcCCCC
Q 009635 57 PLKVVIAGAGLAGLSTAKYLADA----GHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGIND 132 (530)
Q Consensus 57 ~~dVvIIGaG~aGl~aA~~L~~~----G~~V~vlEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~ 132 (530)
++||+|||||+|||+||+.|+++ |++|+|||+++++||++.+.. .+|+.+|.|+|++...++.+.++++++|+..
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~-~~g~~~e~G~~~~~~~~~~~~~l~~~lgl~~ 80 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVK-EDGYLIERGPDSFLERKKSAPDLVKDLGLEH 80 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEe-eCCEEEecCccccccCChHHHHHHHHcCCCc
Confidence 46999999999999999999998 999999999999999999976 5789999999999988888999999999976
Q ss_pred CcceeccceeeecCCCCCCcccccCCCCCCCchhhHHHHHhcccCCChHHHHHhhhhhhhhhhcCcccccccCcccHHHH
Q 009635 133 RLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEW 212 (530)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 212 (530)
...+......+... ..++... +|. ....++.. ....+.++++....... .. ....++|+.+|
T Consensus 81 ~~~~~~~~~~~~~~-~~g~~~~------~p~---~~~~~~~~-~~~~~~~~~~~~~~~~~---~~----~~~~d~s~~e~ 142 (462)
T TIGR00562 81 VLVSDATGQRYVLV-NRGKLMP------VPT---KIAPFVKT-GLFSLGGKLRAGMDFIR---PA----SPGKDESVEEF 142 (462)
T ss_pred ccccCCCCceEEEE-CCCceec------CCC---ChHHHhcC-CCCCchhhHHhhhhhcc---CC----CCCCCcCHHHH
Confidence 54331111111110 0111111 121 11122211 22333333333221110 00 01235899999
Q ss_pred HHHcCCCHHHHHHHHHHHHhhcccCCCCcccHHHHHHHHHHH-----------Hhhc--------------cCCeEEeec
Q 009635 213 MRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRF-----------LQEK--------------HGSKMAFLD 267 (530)
Q Consensus 213 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~--------------~g~~~~~~~ 267 (530)
+++. +.+++.+.++.++..+++..+++++++......+... .... .+..+..+.
T Consensus 143 l~~~-~g~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (462)
T TIGR00562 143 VRRR-FGDEVVENLIEPLLSGIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTRNLPQGSGLQLTAKKQGQDFQTLA 221 (462)
T ss_pred HHHh-cCHHHHHHHHHHHhcccccCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhcccCccccccccccccCCceEecc
Confidence 9987 6778889999999999999999998887554332111 0000 111133344
Q ss_pred CCCCccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHHHhhhCCccccccHHHHH
Q 009635 268 GNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKR 347 (530)
Q Consensus 268 gg~~~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~~~~ll~~~~~~~~~~~~ 347 (530)
|| +..|++.|++.+.. ++|+++++|++|..++++ +.|++.+|+++.||+||+|+|+..+..++++. +....++
T Consensus 222 gG-~~~l~~~l~~~l~~--~~i~~~~~V~~I~~~~~~--~~v~~~~g~~~~ad~VI~t~P~~~~~~ll~~~--~~~~~~~ 294 (462)
T TIGR00562 222 TG-LETLPEEIEKRLKL--TKVYKGTKVTKLSHRGSN--YTLELDNGVTVETDSVVVTAPHKAAAGLLSEL--SNSASSH 294 (462)
T ss_pred hh-HHHHHHHHHHHhcc--CeEEcCCeEEEEEecCCc--EEEEECCCcEEEcCEEEECCCHHHHHHHhccc--CHHHHHH
Confidence 44 66788888877742 789999999999985444 34778888889999999999999999998763 3456678
Q ss_pred HhccCCccEEEEEEEeccccccc-cCcc--ccccC---CcceeeeccCcccccccCCCccEEEEEeeC--ccccCCCChh
Q 009635 348 LEKLVGVPVINIHIWFDRKLKNT-YDHL--LFSRS---SLLSVYADMSLTCKEYYNPNQSMLELVFAP--AEEWISCSDS 419 (530)
Q Consensus 348 l~~~~~~~~~~v~~~~~~~~~~~-~~~~--~~~~~---~~~~~~~~~s~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~e 419 (530)
+.++.+.++.++.+.|++++|.. ...+ +.+.. +..++.++. ...+...+++..++.++..+ ...+...++|
T Consensus 295 l~~l~~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~i~~s-~~~p~~~p~g~~~l~~~~~g~~~~~~~~~~~e 373 (462)
T TIGR00562 295 LDKIHSPPVANVNLGFPEGSVDGELEGFGFLISRSSKFAILGCIFTS-KLFPNRAPPGKTLLTAYIGGATDESIVDLSEN 373 (462)
T ss_pred HhcCCCCceEEEEEEEchHHcCCCCCceEEEccCCCCCceEEEEEEc-cccCCcCCCCcEEEEEEeCCCCCccccCCCHH
Confidence 88999999999999999887642 2222 22222 234444433 23455566666666555543 2455678899
Q ss_pred HHHHHHHHHHHHhCCCCcccccccceEEEEEEeecCCceeecCCCCCCCCCC----CCCCCCceEEecccccCCCCCcHH
Q 009635 420 EIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPL----QRSPVEGFYLAGDYTKQKYLASME 495 (530)
Q Consensus 420 ~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~----~~~~~~~l~~aG~~~~~~~~~~i~ 495 (530)
++++.+++.|.++++.... +..+...+|+++.+.+.++.....+. +..+.++|++||++... .+++
T Consensus 374 e~~~~v~~~L~~~~gi~~~-------p~~~~v~rw~~a~P~~~~g~~~~~~~i~~~l~~~~~~l~l~G~~~~g---~~i~ 443 (462)
T TIGR00562 374 EIINIVLRDLKKVLNINNE-------PEMLCVTRWHRAIPQYHVGHDQRLKEARELLESAYPGVFLTGNSFEG---VGIP 443 (462)
T ss_pred HHHHHHHHHHHHHhCCCCC-------CcEEEEeEccccCCCCCCChHHHHHHHHHHHHhhCCCEEEeccccCC---CcHH
Confidence 9999999999999974211 23456778888777666664332222 23345799999999775 4899
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 009635 496 GAVLSGKLCAQAIVQDYV 513 (530)
Q Consensus 496 gA~~sg~~aA~~vl~~~~ 513 (530)
+|+.||+++|++|++.+.
T Consensus 444 ~~i~sg~~~a~~~~~~~~ 461 (462)
T TIGR00562 444 DCIDQGKAAASDVLTFLF 461 (462)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 999999999999988764
No 10
>PLN02576 protoporphyrinogen oxidase
Probab=100.00 E-value=8.7e-37 Score=315.16 Aligned_cols=431 Identities=20% Similarity=0.281 Sum_probs=283.6
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHC-CCcEEEEecCcccCceeeeeecCCCCEEeeeeceecCCcchHHHHHHHcCCCC
Q 009635 54 PSKPLKVVIAGAGLAGLSTAKYLADA-GHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGIND 132 (530)
Q Consensus 54 ~~~~~dVvIIGaG~aGl~aA~~L~~~-G~~V~vlEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~ 132 (530)
.+.++||+|||||++||+||++|+++ |++|+|||+++++||++.+.. .+|+.+|.|+|++...++.+..++++ |+..
T Consensus 9 ~~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~-~~g~~~d~G~~~~~~~~~~~~~l~~~-gl~~ 86 (496)
T PLN02576 9 AASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVS-EDGFIWEEGPNSFQPSDPELTSAVDS-GLRD 86 (496)
T ss_pred ccCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEec-cCCeEEecCCchhccCcHHHHHHHHc-CChh
Confidence 45667999999999999999999999 999999999999999999976 57899999999998777777777777 8765
Q ss_pred Ccceecc-ceeeecCCCCCCcccccCCCCCCCchhhHHHHHhcccCCChHHHHHhhhhhhhhhhcCcccccccCcccHHH
Q 009635 133 RLQWKEH-SMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQE 211 (530)
Q Consensus 133 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 211 (530)
...+... ...+.. .+++... +|.. ...++. ...+++.++++......... .. ....+++|+.+
T Consensus 87 ~~~~~~~~~~~~~~--~~g~~~~------~p~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~sv~~ 150 (496)
T PLN02576 87 DLVFPDPQAPRYVV--WNGKLRP------LPSN---PIDLPT-FDLLSAPGKIRAGLGAFGWK---RP-PPPGREESVGE 150 (496)
T ss_pred heecCCCCceEEEE--ECCEEEE------cCCC---hHHhcC-cCcCChhHHHHHhHHHhhcc---CC-CCCCCCCcHHH
Confidence 5433221 111111 1121111 1111 111111 23344445544432222110 00 11235789999
Q ss_pred HHHHcCCCHHHHHHHHHHHHhhcccCCCCcccHHHHHHHHHHH---------------Hhhc---------------cCC
Q 009635 212 WMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRF---------------LQEK---------------HGS 261 (530)
Q Consensus 212 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~---------------~g~ 261 (530)
|++++ +..++.+.++.++..++++.++++++.......+..+ .... .+.
T Consensus 151 ~l~~~-~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (496)
T PLN02576 151 FVRRH-LGDEVFERLIDPFVSGVYAGDPSSLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAKKNPKPEPRDPRLPKPKGQ 229 (496)
T ss_pred HHHHh-cCHHHHHHHHHHHhCceecCCHHHHhHHHHhHHHHHHHHhcCcHHHHHHHhhhhhcccccccccccccccccCC
Confidence 99987 7889999999999999999999999887654432221 0000 112
Q ss_pred eEEeecCCCCccchHHHHHHHHHcCcEEEecceeeEEEecCCC-CEEEEEEcCC-cEEecCEEEEccChHHHhhhCCccc
Q 009635 262 KMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDG-TVKNFLLTNG-NVIDGDAYVFATPVDILKLQLPENW 339 (530)
Q Consensus 262 ~~~~~~gg~~~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g-~~~~v~~~~G-~~i~ad~VI~a~~~~~~~~ll~~~~ 339 (530)
......|| +..|++.|++.+.+ .+|++|++|++|+..+++ ..+.+.+.+| +++.||+||+|+|+..+..++++.
T Consensus 230 ~~~~~~gG-~~~L~~~la~~l~~--~~i~l~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~P~~~l~~ll~~~- 305 (496)
T PLN02576 230 TVGSFRGG-LQTLPDALAKRLGK--DKVKLNWKVLSLSKNDDGGYSLTYDTPEGKVNVTAKAVVMTAPLYVVSEMLRPK- 305 (496)
T ss_pred eeEeccch-HHHHHHHHHHhhCc--CcEEcCCEEEEEEECCCCcEEEEEecCCCceeEEeCEEEECCCHHHHHHHhccc-
Confidence 22333444 67888888876621 589999999999986554 3223333455 369999999999999999998753
Q ss_pred cccHHHHHHhccCCccEEEEEEEeccccccc-------cCccc--ccc-C--CcceeeeccCcccccccCCCccEEEEEe
Q 009635 340 KEMAYFKRLEKLVGVPVINIHIWFDRKLKNT-------YDHLL--FSR-S--SLLSVYADMSLTCKEYYNPNQSMLELVF 407 (530)
Q Consensus 340 ~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~-------~~~~~--~~~-~--~~~~~~~~~s~~~~~~~~~~~~v~~~~~ 407 (530)
+....+.+.++.+.++.++++.|++++|.. ...+. .++ . +..++.+ .+...+...+++..++..+.
T Consensus 306 -~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~lg~~~-~s~~~p~~~~~~~~~l~~~~ 383 (496)
T PLN02576 306 -SPAAADALPEFYYPPVAAVTTSYPKEAVKRERLIDGPLEGFGQLHPRKQGVKTLGTIY-SSSLFPDRAPEGRVLLLNYI 383 (496)
T ss_pred -CHHHHHHhccCCCCceEEEEEEEchHHcccccccCCCCCceEEEccCCCCCceEEEEe-ecCcCCCCCCCCCEEEEEEE
Confidence 234567788899999999999999988753 11111 111 1 1222222 22334455556655554444
Q ss_pred eC--ccccCCCChhHHHHHHHHHHHHhCCCCcccccccceEEEEEEeecCCceeecCCCCCCCCCCCC---CCC--CceE
Q 009635 408 AP--AEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQR---SPV--EGFY 480 (530)
Q Consensus 408 ~~--~~~~~~~~~e~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~---~~~--~~l~ 480 (530)
.+ ...+...++|++++.++++|.+++|...... .......+|+.+.+.+.+++....+..+ ... +|||
T Consensus 384 ~~~~~~~~~~~s~ee~~~~~~~~L~~~~g~~~~~~-----p~~~~~~~w~~a~P~~~~g~~~~~~~~~~~l~~~~~~~l~ 458 (496)
T PLN02576 384 GGSRNTGIASASEEELVEAVDRDLRKLLLKPGAPP-----PKVVGVRVWPKAIPQYLLGHLDVLEAAEKMEKDLGLPGLF 458 (496)
T ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHhCCCCCCC-----CcEEEEeEcCcccCCCCcCHHHHHHHHHHHHHhcCCCCEE
Confidence 32 2456678999999999999999998532111 1222345677766666665432221111 122 6999
Q ss_pred EecccccCCCCCcHHHHHHHHHHHHHHHHHhhhhHhh
Q 009635 481 LAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLLAA 517 (530)
Q Consensus 481 ~aG~~~~~~~~~~i~gA~~sg~~aA~~vl~~~~~~~~ 517 (530)
+||+++.. .+|++|+.||.++|++|+..+.....
T Consensus 459 ~aG~~~~g---~~i~~ai~sg~~aA~~i~~~~~~~~~ 492 (496)
T PLN02576 459 LGGNYRGG---VALGKCVESGYEAADLVISYLESSAY 492 (496)
T ss_pred EeccccCC---ccHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99999986 58999999999999999998765443
No 11
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=100.00 E-value=2.1e-36 Score=309.71 Aligned_cols=417 Identities=21% Similarity=0.266 Sum_probs=275.3
Q ss_pred CeEEEECCChHHHHHHHHHHHCC--CcEEEEecCcccCceeeeeecCCCCEEeeeeceecCCcchHHHHHHHcCCCCCcc
Q 009635 58 LKVVIAGAGLAGLSTAKYLADAG--HKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQ 135 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~G--~~V~vlEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~~~ 135 (530)
++|+|||||+|||+||+.|+++| ++|+|||+++++||++.+.. .+|+.+|.|+|++.+.++.+.++++++|+.....
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~-~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~ 79 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVR-KDGFPIELGPESFLARKPSAPALVKELGLEDELV 79 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEe-eCCeEEecChHHhcCCcHHHHHHHHHcCCcccee
Confidence 47999999999999999999987 89999999999999999976 5789999999988877888999999999875433
Q ss_pred eec-cceeeecCCCCCCcccccCCC--CCCCchhhHHHHHhcccCCChHHHHHhhhhhhhhhhcCcccccccCcccHHHH
Q 009635 136 WKE-HSMIFAMPNKPGEFSRFDFPE--VLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEW 212 (530)
Q Consensus 136 ~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 212 (530)
... ...++.. .+....+.... .+|.. +..++ ....+...++++..... ........+++++.+|
T Consensus 80 ~~~~~~~~~~~---~g~~~~~p~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~~~s~~e~ 146 (451)
T PRK11883 80 ANTTGQSYIYV---NGKLHPIPPGTVMGIPTS---IAPFL-FAGLVSPIGKLRAAADL------RPPRWKPGQDQSVGAF 146 (451)
T ss_pred cCCCCcceEEE---CCeEEECCCCCeeccCCC---chhhh-cCCCCCHHHHHHhhCcc------cCCCCCCCCCcCHHHH
Confidence 221 1111111 12111111110 01110 11111 01222222222221111 0111122456899999
Q ss_pred HHHcCCCHHHHHHHHHHHHhhcccCCCCcccHHHHHHHHHHHHh---------------h--ccCCeEEeecCCCCccch
Q 009635 213 MRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQ---------------E--KHGSKMAFLDGNPPERLC 275 (530)
Q Consensus 213 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~--~~g~~~~~~~gg~~~~l~ 275 (530)
+++. +.+.+.+.++.++...+++.+++++++......+..+.. . ..+..+.++.|| +..++
T Consensus 147 l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~~l~ 224 (451)
T PRK11883 147 FRRR-FGDEVVENLIEPLLSGIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKKKTKGVFGTLKGG-LQSLI 224 (451)
T ss_pred HHHh-ccHHHHHHHHHHhhceeecCChHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccCCCCCCceEeeccH-HHHHH
Confidence 9875 778888999999999999999999987655433221110 0 113345566666 78888
Q ss_pred HHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHHHhhhCCccccccHHHHHHhccCCcc
Q 009635 276 LPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVP 355 (530)
Q Consensus 276 ~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~ 355 (530)
+.|++.+.+. +|+++++|++|+.++++ +.|++.+|+++.||+||+|+|+..+..++.+. ...++++++.+.+
T Consensus 225 ~~l~~~l~~~--~i~~~~~V~~i~~~~~~--~~v~~~~g~~~~~d~vI~a~p~~~~~~l~~~~----~~~~~~~~~~~~~ 296 (451)
T PRK11883 225 EALEEKLPAG--TIHKGTPVTKIDKSGDG--YEIVLSNGGEIEADAVIVAVPHPVLPSLFVAP----PAFALFKTIPSTS 296 (451)
T ss_pred HHHHHhCcCC--eEEeCCEEEEEEEcCCe--EEEEECCCCEEEcCEEEECCCHHHHHHhccCh----hHHHHHhCCCCCc
Confidence 8888877543 89999999999975444 35778888899999999999999999987643 2356778889999
Q ss_pred EEEEEEEecccccc-c-cCccccc-cC--CcceeeeccCcccccccCCCccEEEEEeeCc-c-ccCCCChhHHHHHHHHH
Q 009635 356 VINIHIWFDRKLKN-T-YDHLLFS-RS--SLLSVYADMSLTCKEYYNPNQSMLELVFAPA-E-EWISCSDSEIIDATMKE 428 (530)
Q Consensus 356 ~~~v~~~~~~~~~~-~-~~~~~~~-~~--~~~~~~~~~s~~~~~~~~~~~~v~~~~~~~~-~-~~~~~~~e~~~~~~~~~ 428 (530)
+.++++.|+++++. . ...+++. +. +...+.++ +...+...|++..++...+... . ...+.+++++++.++++
T Consensus 297 ~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (451)
T PRK11883 297 VATVALAFPESATNLPDGTGFLVARNSDYTITACTWT-SKKWPHTTPEGKVLLRLYVGRPGDEAVVDATDEELVAFVLAD 375 (451)
T ss_pred eEEEEEEeccccCCCCCceEEEecCCCCCcEEEEEeE-cCcCCCCCCCCcEEEEEecCCCCCchhccCCHHHHHHHHHHH
Confidence 99999999998622 1 1223333 22 22333222 2334455666666665544322 2 22456899999999999
Q ss_pred HHHhCCCCcccccccceEEEEEEeecCCceeecCCCCCCC----CCCCCCCCCceEEecccccCCCCCcHHHHHHHHHHH
Q 009635 429 LAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPC----RPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLC 504 (530)
Q Consensus 429 l~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~----~~~~~~~~~~l~~aG~~~~~~~~~~i~gA~~sg~~a 504 (530)
|+++++.... .......+|..+.+.+.++.... ++.+.. ++|||+||+++.+ +++++|+.||+++
T Consensus 376 L~~~~g~~~~-------~~~~~~~rw~~a~p~~~~~~~~~~~~l~~~l~~-~~~l~~aG~~~~g---~~i~~av~sg~~~ 444 (451)
T PRK11883 376 LSKVMGITGD-------PEFTIVQRWKEAMPQYGVGHIERVAELRAGLPH-YPGLYVAGASFEG---VGLPDCIAQAKRA 444 (451)
T ss_pred HHHHhCCCCC-------ceEEEEeecCccCCCCCccHHHHHHHHHHhhhh-CCCEEEECcccCC---ccHHHHHHHHHHH
Confidence 9999975322 22345556666655444443221 222222 6799999999864 5899999999999
Q ss_pred HHHHHH
Q 009635 505 AQAIVQ 510 (530)
Q Consensus 505 A~~vl~ 510 (530)
|++|++
T Consensus 445 a~~i~~ 450 (451)
T PRK11883 445 AARLLA 450 (451)
T ss_pred HHHHHh
Confidence 999975
No 12
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=100.00 E-value=7e-37 Score=289.65 Aligned_cols=427 Identities=19% Similarity=0.163 Sum_probs=269.9
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceeeeeecCCCCEEeeeeceecCCcchHHHHHHHcCCCCCc
Q 009635 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRL 134 (530)
Q Consensus 55 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~~ 134 (530)
++.+||||||||++||++|++|.|.|++|+|||+++++|||+.+... .+...|+|++++.+....+..+.+++|++...
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~-~~~~~d~gG~~i~p~~~~~l~~~k~~gv~~~~ 83 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARA-GGEYTDLGGQYINPTHDALLAYAKEFGVPLEP 83 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEec-cceeeccCCcccCccchhhhhhHHhcCCCCCc
Confidence 57889999999999999999999999999999999999999999775 78899999999988888899999999998766
Q ss_pred ceeccceeeecCCCCCCcccccCCCCCCCchhhHHHHHhcccCCChHHHHHhhhhhhhhhhcCcccccccCcccHHHHHH
Q 009635 135 QWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMR 214 (530)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~ 214 (530)
.......+.......... |.........+.... ..+..+......+. ........+.+.+++..| +
T Consensus 84 fi~~g~~~~~~~~~~~~~---------p~~~~~~~~d~~~~~-~~~~~~a~~~~~~~---~~~t~~~~e~~~~~~~~W-~ 149 (450)
T COG1231 84 FIRDGDNVIGYVGSSKST---------PKRSLTAAADVRGLV-AELEAKARSAGELD---PGLTPEDRELDLESLAAW-K 149 (450)
T ss_pred eeccCccccccccccccc---------chhccchhhhhcchh-hhhhhhhhcccccC---cccCcchhhhhhHHHHhh-h
Confidence 554433332221111111 110000000000000 00000000000011 111122233445566666 1
Q ss_pred HcCCCHHHHHHHHHHHHhhcc-c-CCCCcccHHHHHHHHHHHH------hhccCCeEEeecCCCCccchHHHHHHHHHcC
Q 009635 215 KQGVPDRVTTEVFIAMSKALN-F-INPDELSMQCILIALNRFL------QEKHGSKMAFLDGNPPERLCLPIVEHIQSLG 286 (530)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~------~~~~g~~~~~~~gg~~~~l~~~l~~~l~~~g 286 (530)
.. ..+.+-......+. + ..+.+.....-........ ...........-|| ++.|.+++.+.+ |
T Consensus 150 ~~-----~~~~~~~~~~a~~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~~~~GG-md~la~Afa~ql---~ 220 (450)
T COG1231 150 TS-----SLRGLSRDPGARVSPGPIEPGDVSLLHDALPLRSASVVDRGIGGEIRTQMLQRLGG-MDQLAEAFAKQL---G 220 (450)
T ss_pred hc-----cccccccCccceeccCCCCcccccchhhhhhhhhhhhccccccccccchhhccCcc-HHHHHHHHHHHh---h
Confidence 00 00001011111111 1 2222222211111111111 11111122222244 788888888776 5
Q ss_pred cEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHHHhhhCCccccccHHHHHHhccCCccEEEEEEEeccc
Q 009635 287 GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRK 366 (530)
Q Consensus 287 ~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~ 366 (530)
-.|.++.+|.+|.+.++| +.|++.+..++.+|.||+|+|..++..+.-++..+..++++++.++|.+..|+.+.|+++
T Consensus 221 ~~I~~~~~V~rI~q~~~g--V~Vt~~~~~~~~ad~~i~tiPl~~l~qI~f~P~l~~~~~~a~~~~~y~~~~K~~v~f~rp 298 (450)
T COG1231 221 TRILLNEPVRRIDQDGDG--VTVTADDVGQYVADYVLVTIPLAILGQIDFAPLLPAEYKQAAKGVPYGSATKIGVAFSRP 298 (450)
T ss_pred ceEEecCceeeEEEcCCe--EEEEeCCcceEEecEEEEecCHHHHhhcccCCCCCHHHHHHhcCcCcchheeeeeecCch
Confidence 789999999999986666 358888844899999999999999999976666677888889999999999999999999
Q ss_pred cccccC---ccccccCCcceeeeccCcccccccCCCccEEEE--E-eeCccccCCCChhHHHHHHHHHHHHhCCCCcccc
Q 009635 367 LKNTYD---HLLFSRSSLLSVYADMSLTCKEYYNPNQSMLEL--V-FAPAEEWISCSDSEIIDATMKELAKLFPDEISAD 440 (530)
Q Consensus 367 ~~~~~~---~~~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~~--~-~~~~~~~~~~~~e~~~~~~~~~l~~~~p~~~~~~ 440 (530)
||+..+ ...+.+.++..++. .+ ....+|..|+.. . ..++..|..+++++.++.++.++.++||+.....
T Consensus 299 FWee~~~l~G~~~tD~~~~~i~~-~s----~~~~~G~gVl~g~~~~g~~A~~~~~~~~~~r~~~vl~~l~~~~g~~a~~~ 373 (450)
T COG1231 299 FWEEAGILGGESLTDLGLGFISY-PS----APFADGPGVLLGSYAFGDDALVIDALPEAERRQKVLARLAKLFGDEAADP 373 (450)
T ss_pred hhhhcccCCceEeecCCcceEec-Cc----cccCCCceEEEeeeeccccceeEecCCHHHHHHHHHHhHhhhCChhhccc
Confidence 997544 44556656332222 11 123356666654 2 2246889999999999999999999999643322
Q ss_pred cccceEEEEEEeecCCcee--e-cCCC-CCCCCCCCCCCCCceEEecccccCCCCCcHHHHHHHHHHHHHHHHHhhhh
Q 009635 441 QSKAKIVKYHVVKTPRSVY--K-TIPN-CEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVL 514 (530)
Q Consensus 441 ~~~~~~~~~~~~~~p~~~~--~-~~~~-~~~~~~~~~~~~~~l~~aG~~~~~~~~~~i~gA~~sg~~aA~~vl~~~~~ 514 (530)
. ......+|...|.+.. . +.++ ....-+.+..|.++|+|||.+....+.|+++||++||++||.+|...+.+
T Consensus 374 f--~~~~~~~W~~dpwt~G~~aa~~~g~~~~~~~~l~~p~gRIh~AgtEhas~~~Gw~eGAi~Sg~~AA~ei~~~l~s 449 (450)
T COG1231 374 F--DYGASVDWSKDPWTLGGTAAYPPGQRTKLYPTLPAPHGRIHFAGTEHASEFGGWLEGAIRSGQRAAAEIHALLSS 449 (450)
T ss_pred c--ccceeeecccCCcCCccccccCCcccccccccccCCCCceEEeeecccccccchhHHHHHHHHHHHHHHHHhhcC
Confidence 1 1223345555555432 2 2333 44556777889999999996666668899999999999999999987754
No 13
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=100.00 E-value=2.1e-35 Score=299.66 Aligned_cols=414 Identities=29% Similarity=0.431 Sum_probs=281.8
Q ss_pred HHHHHHHHCCCcEEEEecCcccCceeeeeecCCC--CEEeeeeceecCCcchHHHHHHHcCCCCCcceeccceeeecCCC
Q 009635 71 STAKYLADAGHKPLLLEARDVLGGKIAAWKDGDG--DWYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNK 148 (530)
Q Consensus 71 ~aA~~L~~~G~~V~vlEa~~~~GG~~~~~~~~~g--~~~d~G~~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~ 148 (530)
+||+.|+++|++|+|||+++++||++.++. .+| +.+|.|+|++.+.++.+.++++++|++...........+...
T Consensus 1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~-~~g~~~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~-- 77 (419)
T TIGR03467 1 SAAVELARAGARVTLFEARPRLGGRARSFE-DGGLGQTIDNGQHVLLGAYTNLLALLRRIGAEPRLQGPRLPLPFYDP-- 77 (419)
T ss_pred ChHHHHHhCCCceEEEecCCCCCCceeEee-cCCCCcceecCCEEEEcccHHHHHHHHHhCCchhhhcccCCcceecC--
Confidence 589999999999999999999999999986 343 459999999998889999999999998654321212222111
Q ss_pred CCCcccccCCCCCCCchhhHHHHHhcccCCChHHHHHhhhhhhhhhhcCcccccccCcccHHHHHHHcCCCHHHHHHHHH
Q 009635 149 PGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQGVPDRVTTEVFI 228 (530)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~ 228 (530)
.+....+.. ..++.+......+. ....++...+.+....+....... ....++.++.+|+++.+..+++.+.++.
T Consensus 78 ~~~~~~~~~-~~~~~p~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~s~~~~l~~~~~~~~~~~~~~~ 152 (419)
T TIGR03467 78 GGRLSRLRL-SRLPAPLHLARGLL-RAPGLSWADKLALARALLALRRTR---FRALDDTTVGDWLQAAGQSERLIERLWE 152 (419)
T ss_pred CCCceeecC-CCCCCCHHHHHHHh-cCCCCCHHHHHHHHHHHHHHHhcC---ccccCCCCHHHHHHHcCCCHHHHHHHHH
Confidence 111111111 11222222122222 233444444444433222111111 1245678999999998888888888999
Q ss_pred HHHhhcccCCCCcccHHHHHHHHHH-HHhhccCCeEEeecCCCCccch-HHHHHHHHHcCcEEEecceeeEEEecCCCCE
Q 009635 229 AMSKALNFINPDELSMQCILIALNR-FLQEKHGSKMAFLDGNPPERLC-LPIVEHIQSLGGEVRLNSRVQKIELNDDGTV 306 (530)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~gg~~~~l~-~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~ 306 (530)
++...+++.++++++.......+.. +.....+..+.++.|| +..++ +.|++.+++.|++|++|++|++|+.++++..
T Consensus 153 p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~gG-~~~~~~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~ 231 (419)
T TIGR03467 153 PLLLSALNTPPERASAALAAKVLRDSFLAGRAASDLLLPRVP-LSELFPEPARRWLDSRGGEVRLGTRVRSIEANAGGIR 231 (419)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCC-HHHHHHHHHHHHHHHcCCEEEcCCeeeEEEEcCCcce
Confidence 9999999999999998776655433 2222233457777776 45554 5588899889999999999999998655422
Q ss_pred EEEEEcCCcEEecCEEEEccChHHHhhhCCccccccHHHHHHhccCCccEEEEEEEeccccccccCccccccCCcceeee
Q 009635 307 KNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTYDHLLFSRSSLLSVYA 386 (530)
Q Consensus 307 ~~v~~~~G~~i~ad~VI~a~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (530)
.+.+.+|+++.||+||+|+|++.+..++++. ...++++++.+.++.++++.|++++|...+...+...+.. ++.
T Consensus 232 -~~~~~~g~~~~~d~vi~a~p~~~~~~ll~~~----~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~-~~~ 305 (419)
T TIGR03467 232 -ALVLSGGETLPADAVVLAVPPRHAASLLPGE----DLGALLTALGYSPITTVHLRLDRAVRLPAPMVGLVGGLAQ-WLF 305 (419)
T ss_pred -EEEecCCccccCCEEEEcCCHHHHHHhCCCc----hHHHHHhhcCCcceEEEEEEeCCCcCCCCCeeeecCCcee-EEE
Confidence 2233467789999999999999999998762 2446778889999999999999999754433323222221 112
Q ss_pred ccCcccccccCCCccEEEEEeeCccccCCCChhHHHHHHHHHHHHhCCCCcccccccceEEEEEEeecCCceeecCCCCC
Q 009635 387 DMSLTCKEYYNPNQSMLELVFAPAEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCE 466 (530)
Q Consensus 387 ~~s~~~~~~~~~~~~v~~~~~~~~~~~~~~~~e~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 466 (530)
+.+. .++...++.++......+...++|++++.++++|.+++|..... .+...++..+..+.|.+.++..
T Consensus 306 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~ 375 (419)
T TIGR03467 306 DRGQ-----LAGEPGYLAVVISAARDLVDLPREELADRIVAELRRAFPRVAGA-----KPLWARVIKEKRATFAATPGLN 375 (419)
T ss_pred ECCc-----CCCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhcCccccC-----CccceEEEEccCCccccCCccc
Confidence 2111 11223444444445566777889999999999999999964211 1222344555556666556655
Q ss_pred CCCCCCCCCCCceEEecccccCCCCCcHHHHHHHHHHHHHHHH
Q 009635 467 PCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIV 509 (530)
Q Consensus 467 ~~~~~~~~~~~~l~~aG~~~~~~~~~~i~gA~~sg~~aA~~vl 509 (530)
..++.+.+|.+|||||||++++++++++|||+.||.+||++|+
T Consensus 376 ~~~~~~~~~~~~l~~aGd~~~~~~~~~~egA~~SG~~aA~~i~ 418 (419)
T TIGR03467 376 RLRPGARTPWPNLFLAGDWTATGWPATMEGAVRSGYQAAEAVL 418 (419)
T ss_pred ccCCCCCCCcCCEEEecccccCCCcchHHHHHHHHHHHHHHHh
Confidence 5566677889999999999998888899999999999999986
No 14
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=100.00 E-value=8.9e-36 Score=290.25 Aligned_cols=409 Identities=23% Similarity=0.339 Sum_probs=291.5
Q ss_pred CeEEEECCChHHHHHHHHHHHCC--CcEEEEecCcccCceeeeeecCCCCEEeeeeceecCCcchHHHHHHHcCCCCCcc
Q 009635 58 LKVVIAGAGLAGLSTAKYLADAG--HKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQ 135 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~G--~~V~vlEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~~~ 135 (530)
++|+|||||+|||+|||+|+|++ .+|+|||+.+++||.+.+.. .+|+.+|.|+|.+...-..+.++++++|++..+.
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~-~~G~~~e~G~~~f~~~~~~~l~li~eLGled~l~ 79 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVK-IDGFLFERGPHHFLARKEEILDLIKELGLEDKLL 79 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEe-eCCEEEeechhheecchHHHHHHHHHhCcHHhhc
Confidence 47999999999999999999998 89999999999999999985 7999999999988766567899999999998877
Q ss_pred eecccee-eecCCCCCCcccccCCCC--CCCchhhHHHHHhcccCCChHHHHHhhhhhhhhhhcCcccccccCcccHHHH
Q 009635 136 WKEHSMI-FAMPNKPGEFSRFDFPEV--LPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEW 212 (530)
Q Consensus 136 ~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 212 (530)
|.....- +. ..+++..+..... +|..... +...+.+.+..+. ........++.++.+|
T Consensus 80 ~~~~~~~~i~---~~gkl~p~P~~~i~~ip~~~~~-----------~~~~~~~~~~~~~-----~~~~~~~~~d~sv~~f 140 (444)
T COG1232 80 WNSTARKYIY---YDGKLHPIPTPTILGIPLLLLS-----------SEAGLARALQEFI-----RPKSWEPKQDISVGEF 140 (444)
T ss_pred cCCcccceEe---eCCcEEECCccceeecCCcccc-----------chhHHHHHHHhhh-----cccCCCCCCCcCHHHH
Confidence 5433222 21 1233322222210 1111110 0001111111111 1111223457899999
Q ss_pred HHHcCCCHHHHHHHHHHHHhhcccCCCCcccHHHHHHHHHHHHhhccCC------------------eEEeecCCCCccc
Q 009635 213 MRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGS------------------KMAFLDGNPPERL 274 (530)
Q Consensus 213 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~------------------~~~~~~gg~~~~l 274 (530)
++++ +.+++.+.++.+++.++|+.+.+++|+.......... ...+++ .+.+++|| ++.|
T Consensus 141 ~r~~-fG~ev~~~~~~pll~giy~~~~~~LS~~~~~p~~~~~-e~~~~s~~~g~~~~~~~~~~~~~~~~~~~~gG-~~~l 217 (444)
T COG1232 141 IRRR-FGEEVVERFIEPLLEGIYAGDADKLSAAAAFPILARA-ERKYGSLLRGAKKEGLPKQSLKKEKFGYLRGG-LQSL 217 (444)
T ss_pred HHHH-HhHHHHHHHHHHHhhchhcCCHHHhhHHHhcchhhhh-hhhhcchhhhhhhccCcccccccccccccCcc-HHHH
Confidence 9998 7889999999999999999999999987333322211 111111 35566666 8999
Q ss_pred hHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHHHhhhCCccccccHHHHHHhccCCc
Q 009635 275 CLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGV 354 (530)
Q Consensus 275 ~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~~~~ll~~~~~~~~~~~~l~~~~~~ 354 (530)
+++|.+.+..+ |+++++|++|.++.++. .+++.+|+.+.||.||+|+|++.+..++++. ...+.+.++.+.
T Consensus 218 ~~al~~~l~~~---i~~~~~V~~i~~~~~~~--~~~~~~g~~~~~D~VI~t~p~~~l~~ll~~~----~~~~~~~~~~~~ 288 (444)
T COG1232 218 IEALAEKLEAK---IRTGTEVTKIDKKGAGK--TIVDVGGEKITADGVISTAPLPELARLLGDE----AVSKAAKELQYT 288 (444)
T ss_pred HHHHHHHhhhc---eeecceeeEEEEcCCcc--EEEEcCCceEEcceEEEcCCHHHHHHHcCCc----chhhhhhhcccc
Confidence 99999998765 99999999999854443 4677888889999999999999999999883 334677888998
Q ss_pred cEEEEEEEeccc----cccccCccccccCC-cceeeeccCcccccccCCCccEEEEEeeCc-ccc-CCCChhHHHHHHHH
Q 009635 355 PVINIHIWFDRK----LKNTYDHLLFSRSS-LLSVYADMSLTCKEYYNPNQSMLELVFAPA-EEW-ISCSDSEIIDATMK 427 (530)
Q Consensus 355 ~~~~v~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~v~~~~~~~~-~~~-~~~~~e~~~~~~~~ 427 (530)
++.++.+.++++ ....++.++..+.+ ..++ ...|..++...|.+++++.+.+... ..+ ..++||++++.+++
T Consensus 289 s~~~vv~~~~~~~~~~~~~~~g~~iad~~~~~~a~-~~~S~~~p~~~p~g~~ll~~~~~~~g~~~~~~~~dee~~~~~l~ 367 (444)
T COG1232 289 SVVTVVVGLDEKDNPALPDGYGLLIADDDPYILAI-TFHSNKWPHEAPEGKTLLRVEFGGPGDESVSTMSDEELVAAVLD 367 (444)
T ss_pred ceEEEEEEeccccccCCCCceEEEEecCCCcceeE-EEecccCCCCCCCCcEEEEEEeecCCCcchhccCHHHHHHHHHH
Confidence 999999999986 33333333444455 3343 3455677777777888887765543 332 36679999999999
Q ss_pred HHHHhCCCCcccccccceEEEEEEeecCCceeecCCCCCCCC----CCCCCCCCceEEecccccCCCCCcHHHHHHHHHH
Q 009635 428 ELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCR----PLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKL 503 (530)
Q Consensus 428 ~l~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~----~~~~~~~~~l~~aG~~~~~~~~~~i~gA~~sg~~ 503 (530)
.|.++++....+ ..++..+|+.+++.|..|+.... ..+.+-.++|+++|.+... -++.+|+.+|..
T Consensus 368 ~L~~~~~~~~~~-------~~~~v~r~~~~~PqY~vG~~~~~~~ir~~l~~~y~gi~~~G~~~~g---~g~~d~I~~g~~ 437 (444)
T COG1232 368 DLKKLGGINGDP-------VFVEVTRWKYAMPQYEVGHLDRLEPIRAALKGAYPGIKSVGRYGEG---VGLPDCIAAGKE 437 (444)
T ss_pred HHHHHcCcCcch-------hheeeeeccccCCccchhHHHHHHHHHHhhccccCCeEEeccCCCC---CCchHHHHHHHH
Confidence 999999864332 24677889999988888754433 2333334799999988775 389999999999
Q ss_pred HHHHHH
Q 009635 504 CAQAIV 509 (530)
Q Consensus 504 aA~~vl 509 (530)
||++|+
T Consensus 438 aa~~l~ 443 (444)
T COG1232 438 AAEQLL 443 (444)
T ss_pred HHHHhh
Confidence 999986
No 15
>PRK07208 hypothetical protein; Provisional
Probab=100.00 E-value=7.5e-35 Score=299.45 Aligned_cols=424 Identities=19% Similarity=0.264 Sum_probs=282.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceeeeeecCCCCEEeeeeceecCCcchHHHHHHHcCCCCCcc
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQ 135 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~~~ 135 (530)
+..||+|||||++||+||+.|+++|++|+|+|+++++||++.+.. .+|+.+|.|+|++...++.+.+++++++......
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~-~~g~~~d~G~h~~~~~~~~~~~l~~~l~~~~~~~ 81 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVT-YKGNRFDIGGHRFFSKSPEVMDLWNEILPDDDFL 81 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeec-cCCceEccCCceeccCCHHHHHHHHHhcCCCccc
Confidence 467999999999999999999999999999999999999998865 5789999999999988889999999998633322
Q ss_pred eeccceeeecCCCCCCcccccCCCCCCCchhhHHHHHhcccCCChHHHHHhhhhhhhhhhcCcccccccCcccHHHHHHH
Q 009635 136 WKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRK 215 (530)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~ 215 (530)
.......... .+.... +|.. ....+. .+.+....+.......... ....+++|+.+|+.+
T Consensus 82 ~~~~~~~~~~---~g~~~~------~p~~---~~~~l~---~~~~~~~~~~~~~~~~~~~-----~~~~~~~s~~e~l~~ 141 (479)
T PRK07208 82 LRPRLSRIYY---RGKFFD------YPLK---AFDALK---NLGLWRTAKCGASYLKARL-----RPRKEEDSFEDWVIN 141 (479)
T ss_pred cccccceEEE---CCEEec------CCcc---hhHHHH---hCCHhHHHHHHHHHHHHhc-----CCCCCCCCHHHHHHH
Confidence 2111111111 111111 1111 111111 1222222222222211110 011246899999998
Q ss_pred cCCCHHHHHHHHHHHHhhcccCCCCcccHHHHHHH---------HHHHHhhc-------------cCCeEEeecCCCCcc
Q 009635 216 QGVPDRVTTEVFIAMSKALNFINPDELSMQCILIA---------LNRFLQEK-------------HGSKMAFLDGNPPER 273 (530)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~-------------~g~~~~~~~gg~~~~ 273 (530)
. +.+++.+.++.++...+|+.+++++++...... +...+... ....+.++.|| +..
T Consensus 142 ~-~g~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gG-~~~ 219 (479)
T PRK07208 142 R-FGRRLYSTFFKGYTEKVWGVPCDEISADWAAQRIKGLSLGKAIRNALRRSLGLKRRNKEVETSLIEEFRYPKLG-PGQ 219 (479)
T ss_pred h-hCHHHHHHHHHHhhhhhhCCChHHCCChHHhCcccCCCHHHHHHHHhhhcccccccCCCccccceeEEeCCCCC-cch
Confidence 6 677889999999999999999999988653311 11111110 01245677777 789
Q ss_pred chHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEc--CCc--EEecCEEEEccChHHHhhhCCccccccHHHHHHh
Q 009635 274 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT--NGN--VIDGDAYVFATPVDILKLQLPENWKEMAYFKRLE 349 (530)
Q Consensus 274 l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~--~G~--~i~ad~VI~a~~~~~~~~ll~~~~~~~~~~~~l~ 349 (530)
|++.|.+.+++.|++|++|++|++|..++++.++.++.. +|+ ++.||+||+|+|++.+..++++. .+....+.++
T Consensus 220 l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l~~~l~~~-~~~~~~~~~~ 298 (479)
T PRK07208 220 LWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLRELVAALDPP-PPPEVRAAAA 298 (479)
T ss_pred HHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHHHHHHhcCCC-CCHHHHHHHh
Confidence 999999999999999999999999998655544444432 353 58999999999999888887643 2335566677
Q ss_pred ccCCccEEEEEEEeccccccccCcccccc-CCcceeeeccCcccccccCCCcc-EEEEEe--e-CccccCCCChhHHHHH
Q 009635 350 KLVGVPVINIHIWFDRKLKNTYDHLLFSR-SSLLSVYADMSLTCKEYYNPNQS-MLELVF--A-PAEEWISCSDSEIIDA 424 (530)
Q Consensus 350 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~-v~~~~~--~-~~~~~~~~~~e~~~~~ 424 (530)
.+.+.++.++++.|+++.......+.+.+ ....+.....+...+...|+++. .+.+.+ . +...| .+++|++++.
T Consensus 299 ~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~p~g~~~~l~~~~~~~~~~~~~-~~~deel~~~ 377 (479)
T PRK07208 299 GLRYRDFITVGLLVKELNLFPDNWIYIHDPDVKVGRLQNFNNWSPYLVPDGRDTWLGLEYFCFEGDDLW-NMSDEDLIAL 377 (479)
T ss_pred CCCcceeEEEEEEecCCCCCCCceEEecCCCCccceecccccCCcccCCCCCceEEEEEEEccCCCccc-cCCHHHHHHH
Confidence 88888999999999987543322222222 11111111223333455666663 332222 1 22334 7889999999
Q ss_pred HHHHHHHhCCCCcccccccceEEEEEEeecCCceeecCCCCCCCCCC---CCCCCCceEEecccccCCCCCcHHHHHHHH
Q 009635 425 TMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPL---QRSPVEGFYLAGDYTKQKYLASMEGAVLSG 501 (530)
Q Consensus 425 ~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~---~~~~~~~l~~aG~~~~~~~~~~i~gA~~sg 501 (530)
+++.|.++ +.... ..+....+.+++.+.+.+..++...... ..++.+|||+||++....| .++++|+.||
T Consensus 378 ~~~~L~~l-~~~~~-----~~~~~~~v~r~~~a~P~y~~~~~~~~~~~~~~~~~~~~l~laGr~~~~~~-~~~d~a~~sg 450 (479)
T PRK07208 378 AIQELARL-GLIRP-----ADVEDGFVVRVPKAYPVYDGTYERNVEIIRDLLDHFPNLHLVGRNGMHRY-NNQDHSMLTA 450 (479)
T ss_pred HHHHHHHc-CCCCh-----hheeEEEEEEecCcccCCCchHHHHHHHHHHHHHhcCCceeecccccccc-CChhHHHHHH
Confidence 99999996 32111 2356667788888877666654322221 3356789999999877765 4899999999
Q ss_pred HHHHHHHHHh
Q 009635 502 KLCAQAIVQD 511 (530)
Q Consensus 502 ~~aA~~vl~~ 511 (530)
+++|+.|++.
T Consensus 451 ~~~a~~i~~~ 460 (479)
T PRK07208 451 MLAVENIIAG 460 (479)
T ss_pred HHHHHHHhcC
Confidence 9999999877
No 16
>PLN02676 polyamine oxidase
Probab=100.00 E-value=1.3e-35 Score=300.97 Aligned_cols=422 Identities=19% Similarity=0.185 Sum_probs=258.2
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHCCC-cEEEEecCcccCceeeeeecCCCCEEeeeeceecC----CcchHHHHHHHc
Q 009635 54 PSKPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFG----AYPNIQNLFGEL 128 (530)
Q Consensus 54 ~~~~~dVvIIGaG~aGl~aA~~L~~~G~-~V~vlEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~----~~~~~~~l~~~l 128 (530)
.+..+||+|||||++||+||++|++.|. +|+|||+++++||++.+.. ..|+.+|.|++++.+ ....+.++.+++
T Consensus 23 ~~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~-~~g~~~d~g~~~~~~~~~~~~~~~~~l~~~~ 101 (487)
T PLN02676 23 AKPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKAN-FAGVSVELGANWVEGVGGPESNPIWELANKL 101 (487)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeec-CCCeEEecCCEEEEcccCcccChHHHHHHhc
Confidence 3457799999999999999999999998 6999999999999998865 478899999999964 234478899999
Q ss_pred CCCCCcceecc-c-eeeecCCCCCCcccccCCCCCCCchhhHHHHHhcccCCChHHHHHhhhhhhhhhhcCcccccccCc
Q 009635 129 GINDRLQWKEH-S-MIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDG 206 (530)
Q Consensus 129 g~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (530)
|+......... . .++.. +++. .+ ......+.. .......+......... ....++
T Consensus 102 g~~~~~~~~~~~~~~~~~~---~g~~--------~~--~~~~~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~~ 158 (487)
T PLN02676 102 KLRTFYSDFDNLSSNIYKQ---DGGL--------YP--KKVVQKSMK---------VADASDEFGENLSISLS-AKKAVD 158 (487)
T ss_pred CCceeecCccccceeEECC---CCCC--------CC--HHHHHHHHH---------HHHHHHHHHHHHHHhhc-ccCCCC
Confidence 98754221111 1 11110 1110 01 000001000 00000000000000000 011223
Q ss_pred ccH--HHHHHHcCCCHHHHHHHHHHHHh-hcccCCCCcccHHHHHHHHHHHHhhccCCeEEee--cCCCCccchHHHHHH
Q 009635 207 LTV--QEWMRKQGVPDRVTTEVFIAMSK-ALNFINPDELSMQCILIALNRFLQEKHGSKMAFL--DGNPPERLCLPIVEH 281 (530)
Q Consensus 207 ~s~--~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~gg~~~~l~~~l~~~ 281 (530)
.++ .+++.+.. ...........+.. ..++.+++++++..... ... .. ..|....++ .+| .+.|++.|++.
T Consensus 159 ~s~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~-~~~-~~-~~g~~~~~~~~~~G-~~~l~~~La~~ 233 (487)
T PLN02676 159 ISILTAQRLFGQV-PKTPLEMVIDYYNYDYEFAEPPRVTSLKNTEP-NPT-FV-DFGEDEYFVADPRG-YESLVYYLAEQ 233 (487)
T ss_pred ccHHHHHHHHhhC-CCCHHHHHHHHHhccceeccCccccchhhcCc-ccc-cc-cCCCceEEeecCCC-HHHHHHHHHhh
Confidence 444 23333321 10111111111111 12455667777654321 001 11 122222232 344 78889999887
Q ss_pred HHHc------CcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHHHhh--hCCccccccHHHHHHhccCC
Q 009635 282 IQSL------GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL--QLPENWKEMAYFKRLEKLVG 353 (530)
Q Consensus 282 l~~~------g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~~~~--ll~~~~~~~~~~~~l~~~~~ 353 (530)
+.++ +.+|++|++|++|..++++ +.|++.+|++++||+||+|+|..+++. +...+..|....++++++.+
T Consensus 234 ~~~~~~~~~~~~~I~l~~~V~~I~~~~~g--V~V~~~~G~~~~a~~VIvtvPl~vLk~~~I~F~P~LP~~k~~ai~~l~~ 311 (487)
T PLN02676 234 FLSTKSGKITDPRLKLNKVVREISYSKNG--VTVKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKPPLPDWKIEAIYQFDM 311 (487)
T ss_pred cccccccccCCCceecCCEeeEEEEcCCc--EEEEECCCCEEEeCEEEEccChHHhccCceEEeCCCCHHHHHHHHhCCc
Confidence 7543 2679999999999986555 368899998999999999999999886 43333455566788899999
Q ss_pred ccEEEEEEEecccccccc-Cc--cccccCC--cceeeeccCcccccccCCCccEEEEEeeC--ccccCCCChhHHHHHHH
Q 009635 354 VPVINIHIWFDRKLKNTY-DH--LLFSRSS--LLSVYADMSLTCKEYYNPNQSMLELVFAP--AEEWISCSDSEIIDATM 426 (530)
Q Consensus 354 ~~~~~v~~~~~~~~~~~~-~~--~~~~~~~--~~~~~~~~s~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~e~~~~~~~ 426 (530)
..+.|+++.|+++||+.. +. ..+.+.. ...++.. .....++..++.+++.+ +..|..+++++.++.++
T Consensus 312 g~~~Kv~l~f~~~FW~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~g~~a~~~~~~s~e~~~~~vl 386 (487)
T PLN02676 312 AVYTKIFLKFPYKFWPSGPGTEFFLYAHERRGYYPFWQH-----LENEYPGSNVLFVTVTDEESRRIEQQPDSETKAEIM 386 (487)
T ss_pred eeeEEEEEEeCCCCCCCCCCceeeeeeccccccchhhhh-----cccCCCCCCEEEEEechHHHHHHHhCCHHHHHHHHH
Confidence 999999999999999751 11 1111110 0000100 00012333444444433 35567788999999999
Q ss_pred HHHHHhCCCCcccccccceEEEEEEeecCCce--eec-CCCC-CCCCCCCCCCCCceEEecccccCCCCCcHHHHHHHHH
Q 009635 427 KELAKLFPDEISADQSKAKIVKYHVVKTPRSV--YKT-IPNC-EPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGK 502 (530)
Q Consensus 427 ~~l~~~~p~~~~~~~~~~~~~~~~~~~~p~~~--~~~-~~~~-~~~~~~~~~~~~~l~~aG~~~~~~~~~~i~gA~~sg~ 502 (530)
++|+++||..... ...+..+.|...|++. |.+ .++. ....+.+++|+++|||||++++..|+|+|+||++||+
T Consensus 387 ~~L~~~~g~~~~~---p~~~~~~~W~~dp~s~Gsys~~~pG~~~~~~~~L~~P~gri~FAGe~ts~~~~g~~eGA~~SG~ 463 (487)
T PLN02676 387 EVLRKMFGPNIPE---ATDILVPRWWSNRFFKGSYSNWPIGVSRYEFDQIRAPVGRVYFTGEHTSEKYNGYVHGAYLAGI 463 (487)
T ss_pred HHHHHHhCCCCCC---cceEEecccCCCCCCCcccCCCCCCCChhHHHHHhCCCCceEEeccccccccccchHHHHHHHH
Confidence 9999999843211 1234555677777743 443 2342 2334566789999999999999989999999999999
Q ss_pred HHHHHHHHhhhh
Q 009635 503 LCAQAIVQDYVL 514 (530)
Q Consensus 503 ~aA~~vl~~~~~ 514 (530)
|||++|++.++.
T Consensus 464 RaA~~I~~~l~~ 475 (487)
T PLN02676 464 DTANDLLECIKK 475 (487)
T ss_pred HHHHHHHHHhcc
Confidence 999999998865
No 17
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=8e-36 Score=298.17 Aligned_cols=439 Identities=25% Similarity=0.316 Sum_probs=255.0
Q ss_pred CCCCCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceeeeeecCCCCEEeeeeceecCCcch-HHHHHHHcCCC
Q 009635 53 RPSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPN-IQNLFGELGIN 131 (530)
Q Consensus 53 ~~~~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~-~~~l~~~lg~~ 131 (530)
...+.++|||||||+|||+||+.|.+.|++|+||||++|+|||+.++....+..+|+|++++.+.+.+ +.-+.+++|++
T Consensus 11 ~~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~~~~~~~~vd~Gas~~~g~~~npl~~l~~qlgl~ 90 (501)
T KOG0029|consen 11 EAGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYTFKSEGGDHVDLGASVLTGVYNNPLALLSKQLGLE 90 (501)
T ss_pred cccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEEEecCCCCeeecCCceecCcCccHHHHHHHHhCcc
Confidence 34567899999999999999999999999999999999999999999877777899999999999885 67788999998
Q ss_pred CCcceeccceeeecCCCCCCcccccCCCCCCCchhhHHHHHhcccCCChHHHHHhhhhhhhhhhcCcccccccCcccHHH
Q 009635 132 DRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQE 211 (530)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 211 (530)
....-.. ..++...+ ...+..+....+...+.+............................. ............
T Consensus 91 ~~~~~~~-~~l~~~~~---~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~ 164 (501)
T KOG0029|consen 91 LYKVRDT-CPLFNENG---GESDKVFDDFVEQEFNRLLDDASNLEQRLDNEIIGISDDSFGEALEA--FLSASRLMKTLL 164 (501)
T ss_pred cceeccc-ccccccCC---cccccccccchhhhhHHHHHHHhhhhhhhhhcccccccccHHHHHHh--HHHHHHHHHhhH
Confidence 6432211 11221111 11111111112221221111111000000000000000000000000 000000000111
Q ss_pred HHHHcCCCHHHHHHHHHHHHhhcccCCCCcccHHHHHHHHHHHHhhccCCeEEeecCCCCccchHHHHHHHHHcCcEEEe
Q 009635 212 WMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRL 291 (530)
Q Consensus 212 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~gg~~~~l~~~l~~~l~~~g~~i~~ 291 (530)
++...+.........+..+... .....+.++.. .......+. ..+ ......+| ...++..+.. |..|++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~d~~~~-~~~-~~~~~~~G-~~~v~~~la~-----~l~I~~ 233 (501)
T KOG0029|consen 165 ELLLEGEADKVLQWHLVNLELT-FIAHLENASAR--LWDQDELFG-GGG-IHLLMKGG-YEPVVNSLAE-----GLDIHL 233 (501)
T ss_pred HHhhhhhhhHHHHHHHHHHHHH-hhccHhHhhHH--hhhhhhhcc-ccc-chhHhhCC-ccHHHhhcCC-----Ccceee
Confidence 1111111111111111111100 00111111110 000111111 111 11222222 3445455544 899999
Q ss_pred cceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHHHhh--hCCccccccHHHHHHhccCCccEEEEEEEecccccc
Q 009635 292 NSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL--QLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKN 369 (530)
Q Consensus 292 ~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~~~~--ll~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~ 369 (530)
+..|.+|.+.+++. +.++..++..+.+|+||+|+|...++. +...+..+..+.++++++....+.||.+.|++.||.
T Consensus 234 ~~~v~~i~~~~~~~-~~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~Lp~~k~~aI~~lg~g~~~Kv~l~F~~~fW~ 312 (501)
T KOG0029|consen 234 NKRVRKIKYGDDGA-VKVTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPLPRWKQEAIDRLGFGLVNKVILEFPRVFWD 312 (501)
T ss_pred ceeeEEEEEecCCc-eEEEEECCCeeEeeEEEEEccHHHhccCceeeCCCCcHHHHHHHHhcCCCceeEEEEEeccccCC
Confidence 99999999977775 345666666699999999999999888 545555677888999999999999999999999995
Q ss_pred c-cCcccc-c-cCCcce--eeeccCcccccccCCCccEEEEEeeC-ccccCCCChhHHHHHHHHHHHHhCCCCccccccc
Q 009635 370 T-YDHLLF-S-RSSLLS--VYADMSLTCKEYYNPNQSMLELVFAP-AEEWISCSDSEIIDATMKELAKLFPDEISADQSK 443 (530)
Q Consensus 370 ~-~~~~~~-~-~~~~~~--~~~~~s~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~e~~~~~~~~~l~~~~p~~~~~~~~~ 443 (530)
. .+.+.. + .....+ .|.+++ ..+ ....++...... +..+.++++++++..+++.|+++|+.....++..
T Consensus 313 ~~~d~fg~~~~~~~~~~~~~f~~~~----~~~-~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~l~k~f~~~~~~~p~~ 387 (501)
T KOG0029|consen 313 QDIDFFGIVPETSVLRGLFTFYDCK----PVA-GHPVLMSVVVGEAAERVETLSDSEIVKKAMKLLRKVFGSEEVPDPLD 387 (501)
T ss_pred CCcCeEEEccccccccchhhhhhcC----ccC-CCCeEEEEehhhhhHHHhcCCHHHHHHHHHHHHHHHhccCcCCCccc
Confidence 2 222211 1 111112 112211 111 122233222222 4778899999999999999999999444444445
Q ss_pred ceEEEEEEeecCCceeecCC-CCCCCC-CCCCCCCCc-eEEecccccCCCCCcHHHHHHHHHHHHHHHHHhhhh
Q 009635 444 AKIVKYHVVKTPRSVYKTIP-NCEPCR-PLQRSPVEG-FYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVL 514 (530)
Q Consensus 444 ~~~~~~~~~~~p~~~~~~~~-~~~~~~-~~~~~~~~~-l~~aG~~~~~~~~~~i~gA~~sg~~aA~~vl~~~~~ 514 (530)
..+.+|.......+.|.+.+ +..... ..++.|+.| +||||++++..|.++|+||+.||.++|..|++.+..
T Consensus 388 ~~vt~w~~d~~~~gsys~~~~~~~~~~y~~l~~pi~~~~ffage~t~~~~~~tm~GA~~sG~~~a~~i~~~~~~ 461 (501)
T KOG0029|consen 388 ALVTRWGTDPLSGGSYSYVAVGSDGDDYDRLAEPIKNRVFFAGEATSRKYPGTMHGAYLSGLRAASDILDSLIE 461 (501)
T ss_pred eeeeeecccccCCccccccCCCCChhHHHHHhccccCcEEecchhhcccCCCchHHHHHhhHHHHHHHHHHHHh
Confidence 55666666666666666544 222222 445778888 999999999999999999999999999999999985
No 18
>PLN02529 lysine-specific histone demethylase 1
Probab=100.00 E-value=1.1e-34 Score=300.75 Aligned_cols=421 Identities=19% Similarity=0.207 Sum_probs=252.7
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceeeeeecC-CC--CEEeeeeceecCCcch-HHHHHHHcCC
Q 009635 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDG-DG--DWYETGLHIFFGAYPN-IQNLFGELGI 130 (530)
Q Consensus 55 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~~~~~-~g--~~~d~G~~~~~~~~~~-~~~l~~~lg~ 130 (530)
....||+|||||++||+||..|+++|++|+|||+++++||++.+.... +| ..+|+|++|+++...+ +..+.+++|+
T Consensus 158 ~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~~~~~g~~~~~DlGaswi~g~~~npl~~la~~lgl 237 (738)
T PLN02529 158 GTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGRKGQFAAVDLGGSVITGIHANPLGVLARQLSI 237 (738)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeecccCCCCceEEecCCeeccccccchHHHHHHHhCC
Confidence 456799999999999999999999999999999999999999987632 23 4799999999987766 7789999998
Q ss_pred CCCcceeccceeeecCCCCCCcccccCCCCCCCchh-hHHHHHhcccCCChHHHHHhhhhhhhhhhcCcccccccCcccH
Q 009635 131 NDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLN-GILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTV 209 (530)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 209 (530)
+.... .....++.. ++... +.... .+...+. ..+.....+.... . ...++.|+
T Consensus 238 ~~~~~-~~~~~~~~~---~G~~v--------~~~~~~~~~~~~~--------~~l~~~~~l~~~~-~-----~~~~d~Sl 291 (738)
T PLN02529 238 PLHKV-RDNCPLYKP---DGALV--------DKEIDSNIEFIFN--------KLLDKVTELRQIM-G-----GFANDISL 291 (738)
T ss_pred Ccccc-CCCceEEeC---CCcCc--------chhhhhhHHHHHH--------HHHHHHHHHHHhc-c-----cCccCCCH
Confidence 75322 111111111 11110 00000 0000000 0000000000000 0 12346788
Q ss_pred HHHHHHcC------CCHHHHHHHHHHHHhhcccCCCCcccHHHHHHHHHHHHhhccCCeEEeecCCCCccchHHHHHHHH
Q 009635 210 QEWMRKQG------VPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQ 283 (530)
Q Consensus 210 ~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~gg~~~~l~~~l~~~l~ 283 (530)
.+++++.. ... ....++......+.......++.......... .....+.....+.|| +..|+++|++
T Consensus 292 ~~~le~~~~~~~~~~t~-~e~~ll~~~~~~le~a~~~~~s~LSl~~~~~~-~~~e~~G~~~~i~GG-~~~Li~aLA~--- 365 (738)
T PLN02529 292 GSVLERLRQLYGVARST-EERQLLDWHLANLEYANAGCLSDLSAAYWDQD-DPYEMGGDHCFLAGG-NWRLINALCE--- 365 (738)
T ss_pred HHHHHHHHhhhccCCCH-HHHHHHHHHHHHhceecCCChHHhhhhHhhhc-cccccCCceEEECCc-HHHHHHHHHh---
Confidence 88887542 111 12233333333333334444443322211111 011223334445555 6777777765
Q ss_pred HcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHHHhh--hCCccccccHHHHHHhccCCccEEEEEE
Q 009635 284 SLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL--QLPENWKEMAYFKRLEKLVGVPVINIHI 361 (530)
Q Consensus 284 ~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~~~~--ll~~~~~~~~~~~~l~~~~~~~~~~v~~ 361 (530)
++.|++|++|++|..++++ +.|++ +++++.||+||+|+|+..+.. +...+..|..+.++++++.+.++.||++
T Consensus 366 --~L~IrLnt~V~~I~~~~dG--VtV~t-~~~~~~AD~VIVTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~yG~v~KV~L 440 (738)
T PLN02529 366 --GVPIFYGKTVDTIKYGNDG--VEVIA-GSQVFQADMVLCTVPLGVLKKRTIRFEPELPRRKLAAIDRLGFGLLNKVAM 440 (738)
T ss_pred --cCCEEcCCceeEEEEcCCe--EEEEE-CCEEEEcCEEEECCCHHHHHhccccCCCCCCHHHHHHHHcCCCceeEEEEE
Confidence 3569999999999986555 34655 445899999999999999874 3222233556778899999999999999
Q ss_pred EeccccccccC-cccc--ccCCccee-eeccCcccccccCCCccEEEEEee-C-ccccCCCChhHHHHHHHHHHHHhCCC
Q 009635 362 WFDRKLKNTYD-HLLF--SRSSLLSV-YADMSLTCKEYYNPNQSMLELVFA-P-AEEWISCSDSEIIDATMKELAKLFPD 435 (530)
Q Consensus 362 ~~~~~~~~~~~-~~~~--~~~~~~~~-~~~~s~~~~~~~~~~~~v~~~~~~-~-~~~~~~~~~e~~~~~~~~~l~~~~p~ 435 (530)
.|+++||+... .+.+ ......+. +...+. ...+.+. ++..+.. + +..+..++++++++.++++|+++|+.
T Consensus 441 ~F~~~FW~~~~~~fG~l~~~~~~~g~~~~~~~~---~~~~ggp-vLvafv~G~~A~~le~lsdeeii~~vl~~L~~ifgp 516 (738)
T PLN02529 441 VFPSVFWGEELDTFGCLNESSNKRGEFFLFYGY---HTVSGGP-ALVALVAGEAAQRFENTDPSTLLHRVLSVLRGIYNP 516 (738)
T ss_pred EeCCccccCCCCceEEEeccCCCCceEEEEecC---CCCCCCC-EEEEEECchhhHHHhcCCHHHHHHHHHHHHHHHhCc
Confidence 99999996432 1111 11111111 111110 0112233 4433333 2 35567788999999999999999973
Q ss_pred CcccccccceEEEEEEeecCCce--eecCC-CC-CCCCCCCCCC-CCceEEecccccCCCCCcHHHHHHHHHHHHHHHHH
Q 009635 436 EISADQSKAKIVKYHVVKTPRSV--YKTIP-NC-EPCRPLQRSP-VEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 510 (530)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~p~~~--~~~~~-~~-~~~~~~~~~~-~~~l~~aG~~~~~~~~~~i~gA~~sg~~aA~~vl~ 510 (530)
.....+....+..++|...|++. |.+.. +. ......+..| .++||||||+++..|+++|+||++||++||++|++
T Consensus 517 ~~~~vp~Pi~~v~t~W~~DP~s~GsYS~~~~g~~~~d~~~La~pv~grL~FAGEaTs~~~pgtVeGAi~SG~RAA~eIl~ 596 (738)
T PLN02529 517 KGINVPDPIQTICTRWGSDPLSYGSYSHVRVQSSGSDYDILAESVSGRLFFAGEATTRQYPATMHGAFLSGLREASRILH 596 (738)
T ss_pred cccccCCceEEEEccCCcCCCCCCCcccCCCCCchhHHHHHhCCCCCCEEEEEHHHhCCCCeEeHHHHHHHHHHHHHHHH
Confidence 11110111234455666666643 44322 21 1111223445 47999999999999999999999999999999999
Q ss_pred hhhhHh
Q 009635 511 DYVLLA 516 (530)
Q Consensus 511 ~~~~~~ 516 (530)
.+++..
T Consensus 597 ~l~~~~ 602 (738)
T PLN02529 597 VARSQQ 602 (738)
T ss_pred HHhhhh
Confidence 887533
No 19
>PLN02568 polyamine oxidase
Probab=100.00 E-value=2.1e-34 Score=293.79 Aligned_cols=438 Identities=18% Similarity=0.184 Sum_probs=249.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCC-----CcEEEEecCcccCceeeeeecCCCCEEeeeeceecCCc-chHHHHHHHcC
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAG-----HKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAY-PNIQNLFGELG 129 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G-----~~V~vlEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~-~~~~~l~~~lg 129 (530)
+..||+|||||++||+||+.|++.| ++|+|||+++++||++.+.. ..|+.+|.|++++.+.. ..+.++++++|
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~~-~~g~~~d~G~~~~~g~~~~~~~~l~~~~g 82 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSE-FGGERIEMGATWIHGIGGSPVYKIAQEAG 82 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEEE-eCCeEEecCCceeCCCCCCHHHHHHHHhC
Confidence 4579999999999999999999887 89999999999999999976 46899999999998754 34889999999
Q ss_pred CCCCcc-eeccceeeecCCCCCCcccccCCC-CCCCc-hhhHH----HHHhcccCC--ChHHHHHhhhhhhhhhhc-Ccc
Q 009635 130 INDRLQ-WKEHSMIFAMPNKPGEFSRFDFPE-VLPAP-LNGIL----AILRNNEML--TWPEKVKFAIGLLPAIIG-GQA 199 (530)
Q Consensus 130 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~----~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~ 199 (530)
+..... +...... ......+...+ .++.. ...+. .++...... .-.+. ...++. .+.. ...
T Consensus 83 ~~~~~~~~~~~~~~------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~-~~~~~~~~ 153 (539)
T PLN02568 83 SLESDEPWECMDGF------PDRPKTVAEGGFEVDPSIVESISTLFRGLMDDAQGKLIEPSEV--DEVDFV-KLAAKAAR 153 (539)
T ss_pred CccccCcceecccc------cccceEEccCCcCCCHHHHHHHHHHHHHHHHHhhccccccccc--cccccc-ccchhccc
Confidence 864321 1110000 00000000000 01100 01111 111110000 00000 000000 0000 000
Q ss_pred cccccCcccHHHHHHHcCCCHHHHHHHHHHHHhhcccCCCCcccHHHHHHHHHHHH--------------------hhcc
Q 009635 200 YVEAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFL--------------------QEKH 259 (530)
Q Consensus 200 ~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~ 259 (530)
......+.|+.+|+++.- .. +.+....+.....+....+.++....+..+..+. ....
T Consensus 154 ~~~~~~~~Sl~~fl~~~l-~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ls~ls~~~~~~~~~~~ 231 (539)
T PLN02568 154 VCESGGGGSVGSFLRRGL-DA-YWDSVSADEQIKGYGGWSRKLLEEAIFTMHENTQRTYTSADDLSTLDLAAESEYRMFP 231 (539)
T ss_pred hhccCCCCcHHHHHHHHH-HH-HHhhcccchhhccccchhHHHHHHHHHHHHHHhhccccccccHhhccccccCcceecC
Confidence 000011247777777521 10 1111111111111111111111111110000000 0001
Q ss_pred CCeEEeecCCCCccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHHHhh------
Q 009635 260 GSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL------ 333 (530)
Q Consensus 260 g~~~~~~~gg~~~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~~~~------ 333 (530)
|. ...+.|| .+.|++.|++.+. +.+|++|++|++|..++++ +.|++.+|+++.||+||+|+|+..+..
T Consensus 232 g~-~~~i~gG-~~~Li~~La~~L~--~~~I~ln~~V~~I~~~~~~--v~V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~ 305 (539)
T PLN02568 232 GE-EITIAKG-YLSVIEALASVLP--PGTIQLGRKVTRIEWQDEP--VKLHFADGSTMTADHVIVTVSLGVLKAGIGEDS 305 (539)
T ss_pred CC-eEEECCc-HHHHHHHHHhhCC--CCEEEeCCeEEEEEEeCCe--EEEEEcCCCEEEcCEEEEcCCHHHHhhcccccc
Confidence 22 3334555 6788888888774 3579999999999985444 358888998899999999999999885
Q ss_pred hCCccccccHHHHHHhccCCccEEEEEEEeccccccccCccccccCCcceeeeccCc---------cc----cccc--CC
Q 009635 334 QLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTYDHLLFSRSSLLSVYADMSL---------TC----KEYY--NP 398 (530)
Q Consensus 334 ll~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~---------~~----~~~~--~~ 398 (530)
+...+..|..+.++++++.+..+.||++.|+++||.....+ ..-+...++.+.+. .+ ..+. ..
T Consensus 306 i~F~P~LP~~k~~Ai~~l~~g~~~Ki~l~f~~~fW~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (539)
T PLN02568 306 GLFSPPLPDFKTDAISRLGFGVVNKLFVELSPRPDGSPEDV--AKFPFLQMAFHRSDSEARHDKIPWWMRRTASICPIHK 383 (539)
T ss_pred ceecCCCCHHHHHHHHhcCCceeeEEEEEecCCCCCccccc--ccccceeeeecccchhhhcccccchhhccccccccCC
Confidence 22333445567789999999999999999999987421110 00001111100000 00 0111 12
Q ss_pred CccEEEEEeeC--ccccCCCChhHHHHHHHHHHHHhCCCCccc-------------------ccccceEEEEEEeecCCc
Q 009635 399 NQSMLELVFAP--AEEWISCSDSEIIDATMKELAKLFPDEISA-------------------DQSKAKIVKYHVVKTPRS 457 (530)
Q Consensus 399 ~~~v~~~~~~~--~~~~~~~~~e~~~~~~~~~l~~~~p~~~~~-------------------~~~~~~~~~~~~~~~p~~ 457 (530)
+..++..+..+ +..+..++++++++.+++.|+++||..... ......+...+|...|++
T Consensus 384 ~~~vL~~~~~G~~A~~~e~l~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~t~W~~dp~~ 463 (539)
T PLN02568 384 NSSVLLSWFAGKEALELEKLSDEEIIRGVQTTLSSFLKRRVAGLGSQSHPLCNGGASSNDGSRWKFVKVLKSKWGTDPLF 463 (539)
T ss_pred CCCEEEEEeccHHHHHHHcCCHHHHHHHHHHHHHHHcCCcccCcccccccccccccccccccCCCCceEEeCCCCCCCcc
Confidence 44555554443 366778999999999999999999853220 011234555667666774
Q ss_pred --eeecC-CCCCC-CCCCCCCCC-------------CceEEecccccCCCCCcHHHHHHHHHHHHHHHHHhhh
Q 009635 458 --VYKTI-PNCEP-CRPLQRSPV-------------EGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 513 (530)
Q Consensus 458 --~~~~~-~~~~~-~~~~~~~~~-------------~~l~~aG~~~~~~~~~~i~gA~~sg~~aA~~vl~~~~ 513 (530)
.|++. ++... ....+..|+ ++|||||++++..|+++|+||++||+|+|++|++.++
T Consensus 464 ~GsYs~~~~g~~~~~~~~La~P~~~~~~~~~~~~~~~~l~FAGEat~~~~~~Tv~GA~~SG~RaA~~i~~~~~ 536 (539)
T PLN02568 464 LGSYSYVAVGSSGDDLDRMAEPLPRISDHDQAGGPPLQLLFAGEATHRTHYSTTHGAYFSGLREANRLLQHYK 536 (539)
T ss_pred CCccCCCcCCCChhHHHHHhCccccccccccccCCCccEEEeecccCCCccchHHHHHHHHHHHHHHHHHHhc
Confidence 45544 34322 223344454 3799999999999999999999999999999999876
No 20
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=100.00 E-value=3.7e-33 Score=287.24 Aligned_cols=433 Identities=21% Similarity=0.250 Sum_probs=261.7
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceeeeeecCCCCEEeeeeceecCCc--chHHHHHHHcCCCCC-
Q 009635 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAY--PNIQNLFGELGINDR- 133 (530)
Q Consensus 57 ~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~--~~~~~l~~~lg~~~~- 133 (530)
+.||||||||++||+||..|+++|++|+|||+++++||++.++. .+|+.+|.|+|++.+.. ..+..+++++|+...
T Consensus 1 ~~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~-~~G~~fD~G~~~~~~~~~~~~~~~~~~~lg~~~~~ 79 (492)
T TIGR02733 1 ETSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFR-RRGFTFDVGATQVAGLEPGGIHARIFRELGIPLPE 79 (492)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceec-cCCEEEeecceEEEecCcCCHHHHHHHHcCCCCcc
Confidence 36999999999999999999999999999999999999999987 58999999999987532 336788899998632
Q ss_pred cceeccceeeecCCCCCCccccc--------CCCCCCCchh---hHHHHHh-------cccCC---ChHHHHHhhhhhhh
Q 009635 134 LQWKEHSMIFAMPNKPGEFSRFD--------FPEVLPAPLN---GILAILR-------NNEML---TWPEKVKFAIGLLP 192 (530)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~---~~~~~~~-------~~~~~---~~~~~~~~~~~~~~ 192 (530)
.............+....+..+. .....|.... .+..... ....+ ...+..+....+.+
T Consensus 80 ~~~~d~~~~~~~~dg~~~~~~~~d~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (492)
T TIGR02733 80 AKILDPACAVDLPDGSEPIPLWHDPDRWQKERERQFPGSERFWQLCSQLHQSNWRFAGRDPVLPPRNYWDLLQLVSALRP 159 (492)
T ss_pred cccCCCCcEEEECCCceEeeeecCHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhcCh
Confidence 11111111111111100010000 0001121111 1000000 00000 01111110000000
Q ss_pred hhhcCcccccccCcccHHHHHHHcC-CCHHHHHHHHHHHHhhcccCCCCcccHHHHHHHHHHHHhhccCCeEEeecCCCC
Q 009635 193 AIIGGQAYVEAQDGLTVQEWMRKQG-VPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPP 271 (530)
Q Consensus 193 ~~~~~~~~~~~~~~~s~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~gg~~ 271 (530)
.. .........++.+|+++.+ ...+..+.++..........++++.+.......+. +.....| ..++.|| +
T Consensus 160 ~~----~~~~~~~~~s~~~~l~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~G--~~~~~GG-~ 231 (492)
T TIGR02733 160 DT----LLTGPLSLLTVADLLRLCGLGDDRRLRRFLDLQLKLYSQEDADETAALYGATVLQ-MAQAPHG--LWHLHGS-M 231 (492)
T ss_pred hh----hhhhhhhhhhHHHHHHHhCCCccHHHHHHHHHHHhhhccCChhhhhHHHHHHHhh-ccccCCC--ceeecCc-H
Confidence 00 0011123578899998864 34444455554333222334455555543322111 1111122 3456776 8
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCC-----cEEecCEEEEccChHHHhhhCCccccccHHHH
Q 009635 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-----NVIDGDAYVFATPVDILKLQLPENWKEMAYFK 346 (530)
Q Consensus 272 ~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G-----~~i~ad~VI~a~~~~~~~~ll~~~~~~~~~~~ 346 (530)
+.|+++|.+.++++|++|+++++|++|..+ ++++.+|.+.+| +++.||+||+++++..+.+|+++...+..+.+
T Consensus 232 ~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~~ll~~~~~~~~~~~ 310 (492)
T TIGR02733 232 QTLSDRLVEALKRDGGNLLTGQRVTAIHTK-GGRAGWVVVVDSRKQEDLNVKADDVVANLPPQSLLELLGPLGLPPGYRK 310 (492)
T ss_pred HHHHHHHHHHHHhcCCEEeCCceEEEEEEe-CCeEEEEEEecCCCCceEEEECCEEEECCCHHHHHHhcCcccCCHHHHH
Confidence 999999999999999999999999999984 455556666554 57999999999999988889876544555667
Q ss_pred HHhccCCcc-EEEEEEEeccccc----cccCccccccCCcceeeeccCcccccccCCCccEEE-EEeeCccccCCC----
Q 009635 347 RLEKLVGVP-VINIHIWFDRKLK----NTYDHLLFSRSSLLSVYADMSLTCKEYYNPNQSMLE-LVFAPAEEWISC---- 416 (530)
Q Consensus 347 ~l~~~~~~~-~~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~-~~~~~~~~~~~~---- 416 (530)
.++++.+.+ .+.+++.+++... .......+.... .+|...+..++..+|+|+.++. ..+++...|...
T Consensus 311 ~~~~~~~s~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~d~~~aP~G~~~l~~~~~~~~~~~~~~~~~~ 388 (492)
T TIGR02733 311 RLKKLPEPSGAFVFYLGVKRAALPVDCPPHLQFLSDHQG--SLFVSISQEGDGRAPQGEATLIASSFTDTNDWSSLDEED 388 (492)
T ss_pred HHhcCCCCCceEEEEEeecccccCCCCCcceeeccCCCc--eEEEEeCCccccCCCCCceEEEEEcCCCHHHHcCCCHHH
Confidence 777777665 5678899987421 111111222222 3443333345677888887764 345555555432
Q ss_pred ---ChhHHHHHHHHHHHHhCCCCcccccccceEEEEEEeecCCce-----------eecCCCC---CCCCCCCCCCCCce
Q 009635 417 ---SDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSV-----------YKTIPNC---EPCRPLQRSPVEGF 479 (530)
Q Consensus 417 ---~~e~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~p~~~-----------~~~~~~~---~~~~~~~~~~~~~l 479 (530)
.++++.+.+++.|++.+|+.... +. .....+|.+. |+..... ..+++..+++++||
T Consensus 389 y~~~k~~~~~~il~~le~~~p~l~~~------i~-~~~v~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~~~~~~t~i~gL 461 (492)
T TIGR02733 389 YTAKKKQYTQTIIERLGHYFDLLEEN------WV-HVELATPRTFERWTGRPQGIVGGLGQRPSTFGPFGLSSRTPVKGL 461 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCcccc------EE-EEEccCCchHHHHhCCCCcEECCCCcCccccCCcCCCCCCCCCCe
Confidence 23568889999999999975332 33 3445666632 2222211 12234447899999
Q ss_pred EEecccccCCCCCcHHHHHHHHHHHHHHHHH
Q 009635 480 YLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 510 (530)
Q Consensus 480 ~~aG~~~~~~~~~~i~gA~~sg~~aA~~vl~ 510 (530)
||||+++.++ +++.||+.||+.+|++|+.
T Consensus 462 yl~G~~~~pG--~Gv~g~~~sg~~~a~~i~~ 490 (492)
T TIGR02733 462 WLCGDSIHPG--EGTAGVSYSALMVVRQILA 490 (492)
T ss_pred EEecCccCCC--CcHHHHHHHHHHHHHHHhh
Confidence 9999999886 6999999999999999985
No 21
>PLN03000 amine oxidase
Probab=100.00 E-value=3.7e-34 Score=297.03 Aligned_cols=421 Identities=19% Similarity=0.236 Sum_probs=248.9
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceeeeeecC---CCCEEeeeeceecCCcch-HHHHHHHcCC
Q 009635 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDG---DGDWYETGLHIFFGAYPN-IQNLFGELGI 130 (530)
Q Consensus 55 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~~~~~---~g~~~d~G~~~~~~~~~~-~~~l~~~lg~ 130 (530)
....+|+|||||++||+||+.|.+.|++|+|+|+++++||++.+.... .++.+|.|++++++...+ +..+++++|+
T Consensus 182 ~~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~~~~g~~~~~~~DlGas~i~g~~~npl~~L~~qlgl 261 (881)
T PLN03000 182 SSKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEANRVGAAADLGGSVLTGTLGNPLGIIARQLGS 261 (881)
T ss_pred CCCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcceecccCCCCceEeecCCeEEeCCCccHHHHHHHHcCC
Confidence 356899999999999999999999999999999999999999987632 257899999999987665 5677899998
Q ss_pred CCCcceeccceeeecCCCCCCcccccCCCCCCCchh-hHHHHHhcccCCChHHHHHhhhhhhhhhhcCcccccccCcccH
Q 009635 131 NDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLN-GILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTV 209 (530)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 209 (530)
........ ..++.. .+.. .+.... .+...+. . +.+.......+... ...+.++
T Consensus 262 ~l~~~~~~-~~ly~~---~Gk~--------v~~~~~~~ve~~fn--~---lLd~~~~lr~l~~~---------~~~D~SL 315 (881)
T PLN03000 262 SLYKVRDK-CPLYRV---DGKP--------VDPDVDLKVEVAFN--Q---LLDKASKLRQLMGD---------VSMDVSL 315 (881)
T ss_pred ceeecCCC-CeEEEe---CCcC--------CchhhhhhHHHHHH--H---HHHHHHHHHHHhcc---------cCcCCcH
Confidence 74322111 111111 1111 000000 0000000 0 00000000000000 0112333
Q ss_pred HHHHHH---c---CCCHHHHHHHHHHHHhhcccCCCCcccHHHHHHHHHHHHhhccCCeEEeecCCCCccchHHHHHHHH
Q 009635 210 QEWMRK---Q---GVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQ 283 (530)
Q Consensus 210 ~~~l~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~gg~~~~l~~~l~~~l~ 283 (530)
.++++. + .+..+. ..++......+.......++...... .........+.....+.|| +..|+++|++.+
T Consensus 316 g~aLe~~~~~~g~~~t~e~-~~Ll~w~lanLE~~~as~ls~LSl~~-wdqd~~~e~~G~~~~v~GG-~~~LieaLa~~L- 391 (881)
T PLN03000 316 GAALETFRQVSGNDVATEE-MGLFNWHLANLEYANAGLVSKLSLAF-WDQDDPYDMGGDHCFLPGG-NGRLVQALAENV- 391 (881)
T ss_pred HHHHHHHHHHHcccCCHHH-HHHHHHHHHHHhcccccCHHHHHHHH-hhhcccccCCCceEEeCCC-HHHHHHHHHhhC-
Confidence 332221 1 111111 11222222222222222222221110 0000001122334445565 788888888765
Q ss_pred HcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHHHh--hhCCccccccHHHHHHhccCCccEEEEEE
Q 009635 284 SLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILK--LQLPENWKEMAYFKRLEKLVGVPVINIHI 361 (530)
Q Consensus 284 ~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~~~--~ll~~~~~~~~~~~~l~~~~~~~~~~v~~ 361 (530)
.|+++++|++|.+.+++ +.|++.++ ++.||+||+|+|..+++ .+...+..+....++++++.+..+.||.+
T Consensus 392 ----~I~Ln~~Vt~I~~~~dg--V~V~~~~~-~~~AD~VIvTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~~G~l~KViL 464 (881)
T PLN03000 392 ----PILYEKTVQTIRYGSNG--VKVIAGNQ-VYEGDMVLCTVPLGVLKNGSIKFVPELPQRKLDCIKRLGFGLLNKVAM 464 (881)
T ss_pred ----CcccCCcEEEEEECCCe--EEEEECCc-EEEeceEEEcCCHHHHhhCceeeCCCCCHHHHHHHHcCCCcceEEEEE
Confidence 49999999999986555 34666544 89999999999999998 33323334566778999999999999999
Q ss_pred Eecccccccc-Ccc--ccccCCcceeeeccCcccccccC-CCccEEEEEeeC--ccccCCCChhHHHHHHHHHHHHhCCC
Q 009635 362 WFDRKLKNTY-DHL--LFSRSSLLSVYADMSLTCKEYYN-PNQSMLELVFAP--AEEWISCSDSEIIDATMKELAKLFPD 435 (530)
Q Consensus 362 ~~~~~~~~~~-~~~--~~~~~~~~~~~~~~s~~~~~~~~-~~~~v~~~~~~~--~~~~~~~~~e~~~~~~~~~l~~~~p~ 435 (530)
.|+++||+.. +.+ +..+....+.++. +.++.+ .+..++..+..+ +..+..++++++++.++++|+++|+.
T Consensus 465 ~Fd~~FW~~d~~~FG~l~~~~~~rg~~~~----f~s~sp~~G~pVLvafv~Gd~A~~le~lSdeE~ve~vl~~Lrkifg~ 540 (881)
T PLN03000 465 LFPYVFWSTDLDTFGHLTEDPNYRGEFFL----FYSYAPVAGGPLLIALVAGEAAHKFETMPPTDAVTRVLHILRGIYEP 540 (881)
T ss_pred EeCCccccCCCCceeEEecCCCCCceeEE----EeCCCCCCCCcEEEEEecCchhHHhhcCCHHHHHHHHHHHHHHHhCc
Confidence 9999999753 111 1111111111110 111222 233455444433 35677889999999999999999973
Q ss_pred C-c-ccccccceEEEEEEeecCCc--eeecC-CCC-CCCCCCCCCCC--CceEEecccccCCCCCcHHHHHHHHHHHHHH
Q 009635 436 E-I-SADQSKAKIVKYHVVKTPRS--VYKTI-PNC-EPCRPLQRSPV--EGFYLAGDYTKQKYLASMEGAVLSGKLCAQA 507 (530)
Q Consensus 436 ~-~-~~~~~~~~~~~~~~~~~p~~--~~~~~-~~~-~~~~~~~~~~~--~~l~~aG~~~~~~~~~~i~gA~~sg~~aA~~ 507 (530)
. . .+.+ .....++|...|++ .|.+. ++. ......+.+|+ ++|||||++++..|+|+|+||++||+|||++
T Consensus 541 ~~~~vp~P--v~~ivtrW~~DPysrGSYS~~~pG~~~~~~d~LaePv~~GRIfFAGEaTs~~~~GTVhGAieSGlRAA~e 618 (881)
T PLN03000 541 QGINVPDP--LQTVCTRWGGDPFSLGSYSNVAVGASGDDYDILAESVGDGRLFFAGEATTRRYPATMHGAFVTGLREAAN 618 (881)
T ss_pred cccccCCc--eEEEEccCCCCCCCCccccCCCCCCchHHHHHHhCcCCCCcEEEeehHHhCCCCeeHHHHHHHHHHHHHH
Confidence 1 1 1112 13444566666664 45443 332 22334456664 5899999999998999999999999999999
Q ss_pred HHHhhhhHhhh
Q 009635 508 IVQDYVLLAAR 518 (530)
Q Consensus 508 vl~~~~~~~~~ 518 (530)
|++.++....+
T Consensus 619 Il~~l~~~~~~ 629 (881)
T PLN03000 619 MAQSAKARGIR 629 (881)
T ss_pred HHHHhhhccCC
Confidence 99998866554
No 22
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=100.00 E-value=2.3e-33 Score=291.80 Aligned_cols=418 Identities=19% Similarity=0.228 Sum_probs=248.2
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceeeeeecCC-C--CEEeeeeceecCCcch-HHHHHHHcCC
Q 009635 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGD-G--DWYETGLHIFFGAYPN-IQNLFGELGI 130 (530)
Q Consensus 55 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~~~~~~-g--~~~d~G~~~~~~~~~~-~~~l~~~lg~ 130 (530)
....+|+|||||++||+||+.|++.|++|+|+|+++++||++.+....+ + ..+|.|++++++...+ +..+++++|+
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~~~g~~~~~~~d~Gas~i~g~~~npl~~l~~~lgl 315 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMKMKGDGVVAAADLGGSVLTGINGNPLGVLARQLGL 315 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccccccCCCCcceeccCCceeecCCCccHHHHHHHHcCC
Confidence 3567999999999999999999999999999999999999998876332 2 3689999999877655 6789999998
Q ss_pred CCCcceeccceeeecCCCCCCcccccCCCCCCCchh-hHHHHHhcccCCChHHHHHhhhhhhhhhhcCcccccccCcccH
Q 009635 131 NDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLN-GILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTV 209 (530)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 209 (530)
+..... ....++. .++...... ++.... .+..++.. ..+.+.. +. .. ....+.|+
T Consensus 316 ~~~~~~-~~~~~~~---~dG~~~~~~----~~~~v~~~f~~lL~~------~~klr~~--~~-------~~-~~~~D~SL 371 (808)
T PLN02328 316 PLHKVR-DICPLYL---PDGKAVDAE----IDSKIEASFNKLLDR------VCKLRQA--MI-------EE-VKSVDVNL 371 (808)
T ss_pred ceEecC-CCceEEe---CCCcCcchh----hhhhHHHHHHHHHHH------HHHHHHh--hh-------hc-ccccCcCH
Confidence 643211 1111111 111110000 111000 00111110 0000000 00 00 01124677
Q ss_pred HHHHHHc----CCC-HHHHHHHHHHHHhhcccCCCCcccHHHHHHHHHHHHh---hccCCeEEeecCCCCccchHHHHHH
Q 009635 210 QEWMRKQ----GVP-DRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQ---EKHGSKMAFLDGNPPERLCLPIVEH 281 (530)
Q Consensus 210 ~~~l~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g~~~~~~~gg~~~~l~~~l~~~ 281 (530)
.++++.. +.. ......++......+.......++... +..+.. ...+.....+.|| +..|+++|++.
T Consensus 372 g~~le~~~~~~~~~~~~~e~~Ll~w~lanlE~~~gs~ls~LS----l~~w~qd~~~e~~G~~~~v~GG-~~~Li~aLa~~ 446 (808)
T PLN02328 372 GTALEAFRHVYKVAEDPQERMLLNWHLANLEYANASLMSNLS----MAYWDQDDPYEMGGDHCFIPGG-NDTFVRELAKD 446 (808)
T ss_pred HHHHHHHhhhhccCCCHHHHHHHHHHHHHHhccchhhHHHHH----hhhhhccccccCCCeEEEECCc-HHHHHHHHHhh
Confidence 7777532 110 011112222222221112222221111 111111 1122334455565 78888888876
Q ss_pred HHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHHHhh--hCCccccccHHHHHHhccCCccEEEE
Q 009635 282 IQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL--QLPENWKEMAYFKRLEKLVGVPVINI 359 (530)
Q Consensus 282 l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~~~~--ll~~~~~~~~~~~~l~~~~~~~~~~v 359 (530)
+ .|++|++|++|...+++. .| +.+|+++.||+||+|+|...+.. +...+..+..+.++++++.+..+.||
T Consensus 447 L-----~I~ln~~V~~I~~~~dgV--~V-~~~G~~~~AD~VIvTvPl~vLk~~~I~F~P~LP~~K~~AI~~l~yG~~~KV 518 (808)
T PLN02328 447 L-----PIFYERTVESIRYGVDGV--IV-YAGGQEFHGDMVLCTVPLGVLKKGSIEFYPELPQRKKDAIQRLGYGLLNKV 518 (808)
T ss_pred C-----CcccCCeeEEEEEcCCeE--EE-EeCCeEEEcCEEEECCCHHHHhhcccccCCCCCHHHHHHHHcCCCcceEEE
Confidence 5 489999999999865553 34 55677899999999999999884 22222345567789999999999999
Q ss_pred EEEeccccccccCc-c--ccccCCccee---eeccCcccccccCCCccEEEEEeeC--ccccCCCChhHHHHHHHHHHHH
Q 009635 360 HIWFDRKLKNTYDH-L--LFSRSSLLSV---YADMSLTCKEYYNPNQSMLELVFAP--AEEWISCSDSEIIDATMKELAK 431 (530)
Q Consensus 360 ~~~~~~~~~~~~~~-~--~~~~~~~~~~---~~~~s~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~e~~~~~~~~~l~~ 431 (530)
.+.|+++||..... + +..+....+. +.+.+ ...+..++..+..+ +..+..++++++++.++++|++
T Consensus 519 ~L~F~~~FW~~~~d~fG~l~~d~s~rG~~~lf~s~s------~~~G~~vLvafv~G~~A~~~e~lsdeE~v~~vL~~Lr~ 592 (808)
T PLN02328 519 ALLFPYNFWGGEIDTFGHLTEDPSMRGEFFLFYSYS------SVSGGPLLIALVAGDAAVKFETLSPVESVKRVLQILRG 592 (808)
T ss_pred EEEeCCccccCCCCceEEEeecCCCCceEEEEecCC------CCCCCcEEEEEecChhhHHHhcCCHHHHHHHHHHHHHH
Confidence 99999999975321 1 1121112221 11111 11233445444433 2556678899999999999999
Q ss_pred hCCCC-c-ccccccceEEEEEEeecCCc--eeecC-CCCC-CCCCCCCCCC--CceEEecccccCCCCCcHHHHHHHHHH
Q 009635 432 LFPDE-I-SADQSKAKIVKYHVVKTPRS--VYKTI-PNCE-PCRPLQRSPV--EGFYLAGDYTKQKYLASMEGAVLSGKL 503 (530)
Q Consensus 432 ~~p~~-~-~~~~~~~~~~~~~~~~~p~~--~~~~~-~~~~-~~~~~~~~~~--~~l~~aG~~~~~~~~~~i~gA~~sg~~ 503 (530)
+|+.. . .+.+ .....++|...|++ .|.+. ++.. ...+.+..|+ ++|||||++++..|+|+|+||++||+|
T Consensus 593 ifgp~~~~vp~P--~~~~vtrW~~DP~s~GSYS~~~pG~~~~~~~~LaePv~~GRL~FAGEaTs~~~~GtVhGAi~SGlR 670 (808)
T PLN02328 593 IFHPKGIVVPDP--VQAVCTRWGKDCFTYGSYSYVAVGSSGDDYDILAESVGDGRVFFAGEATNKQYPATMHGAFLSGMR 670 (808)
T ss_pred HhCcccccccCc--ceEEEecCCCCCCcCCCCCCCCCCCchhHHHHHhccCCCCCEEEEEhhHhCCCCeEhHHHHHHHHH
Confidence 99741 1 1111 23444556555554 34432 2321 1223445554 589999999998889999999999999
Q ss_pred HHHHHHHhhhhHhh
Q 009635 504 CAQAIVQDYVLLAA 517 (530)
Q Consensus 504 aA~~vl~~~~~~~~ 517 (530)
||++|++.++....
T Consensus 671 AA~eIl~~~~~~~~ 684 (808)
T PLN02328 671 EAANILRVARRRSL 684 (808)
T ss_pred HHHHHHHHHhhccc
Confidence 99999999886654
No 23
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=100.00 E-value=4e-33 Score=287.95 Aligned_cols=429 Identities=21% Similarity=0.249 Sum_probs=259.4
Q ss_pred EEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceeeeeecCCCCEEeeeeceecCCcchHHHHHHHcCCC--CCccee
Q 009635 60 VVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGIN--DRLQWK 137 (530)
Q Consensus 60 VvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~--~~~~~~ 137 (530)
|||||||++||+||..|+++|++|+|||+++++||+++++. .+|+.+|.|++++... ..+.++++++|++ ..+.+.
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~-~~G~~fD~G~~~~~~~-~~~~~l~~~lg~~l~~~l~~~ 78 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLE-DDGFRFDTGPTVITMP-EALEELFALAGRDLADYVELV 78 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEe-cCCeEEecCCeEEccc-cHHHHHHHHcCCChhheEEEE
Confidence 69999999999999999999999999999999999999987 5899999999988632 3467888888853 233333
Q ss_pred ccceeeecCCCCCCcccccCCCC-----------CCCchhhHHHHHhcccCCChHHHHHhh-hhhh--h-----hhhc--
Q 009635 138 EHSMIFAMPNKPGEFSRFDFPEV-----------LPAPLNGILAILRNNEMLTWPEKVKFA-IGLL--P-----AIIG-- 196 (530)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~-----~~~~-- 196 (530)
+....+.+...++.. +.+... .|.....+..++.... ...... .... + ....
T Consensus 79 ~~~~~~~~~~~~g~~--~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (502)
T TIGR02734 79 PLDPFYRLCWEDGSQ--LDVDNDQEELEAQIARFNPGDVAGYRRFLDYAE-----RVYREGYRKLGYVPFLSPRDLLRAD 151 (502)
T ss_pred ECCCceEEECCCCCE--EEecCCHHHHHHHHHHhCcccHHHHHHHHHHHH-----HHHHHHHHHHhhCCCCCHHHHHhHh
Confidence 322222221122211 111111 1111111111111000 000000 0000 0 0000
Q ss_pred CcccccccCcccHHHHHHHcCCCHHHHHHHHHHHHhhcccCCCCcccHHHHHHHHHHHHhhccCCeEEeecCCCCccchH
Q 009635 197 GQAYVEAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCL 276 (530)
Q Consensus 197 ~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~gg~~~~l~~ 276 (530)
...........++.+++++.. ..+..+.++.. .....+.++.+.+....+..+ ... .+ ...++.|| ...+++
T Consensus 152 ~~~~~~~~~~~s~~~~~~~~~-~~~~l~~~l~~-~~~~~g~~p~~~~~~~~l~~~---~~~-~~-g~~~~~gG-~~~l~~ 223 (502)
T TIGR02734 152 LPQLLALLAWRSLYSKVARFF-SDERLRQAFSF-HALFLGGNPFRTPSIYALISA---LER-EW-GVWFPRGG-TGALVA 223 (502)
T ss_pred hHhhhhccCcCCHHHHHHhhc-CCHHHHHHhcc-cceeeccCcccchHHHHHHHH---HHh-hc-eEEEcCCC-HHHHHH
Confidence 000111224578888888763 33333333331 122344566666654332221 111 12 24467776 689999
Q ss_pred HHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChH-HHhhhCCccccccHHHHHHhccC-Cc
Q 009635 277 PIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQLPENWKEMAYFKRLEKLV-GV 354 (530)
Q Consensus 277 ~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~-~~~~ll~~~~~~~~~~~~l~~~~-~~ 354 (530)
+|.+.++++|++|+++++|++|..+ ++++++|++.+|+++.||+||+|++.. +...|++....+..+.+.+++.. ..
T Consensus 224 al~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~ 302 (502)
T TIGR02734 224 AMAKLAEDLGGELRLNAEVIRIETE-GGRATAVHLADGERLDADAVVSNADLHHTYRRLLPNHPRRRYPAARLSRKRPSP 302 (502)
T ss_pred HHHHHHHHCCCEEEECCeEEEEEee-CCEEEEEEECCCCEEECCEEEECCcHHHHHHHhcCccccccccccccccCCcCC
Confidence 9999999999999999999999874 566678999999889999999999974 54567766543333334455555 34
Q ss_pred cEEEEEEEec---ccccc-ccCcccccc------------C---Ccceeee-ccCcccccccCCCccEEEE-EeeCcc--
Q 009635 355 PVINIHIWFD---RKLKN-TYDHLLFSR------------S---SLLSVYA-DMSLTCKEYYNPNQSMLEL-VFAPAE-- 411 (530)
Q Consensus 355 ~~~~v~~~~~---~~~~~-~~~~~~~~~------------~---~~~~~~~-~~s~~~~~~~~~~~~v~~~-~~~~~~-- 411 (530)
+.+++++.++ +++.. ...++.+.. . ..+.++. ..+..++..+|+|+.++.+ ...+..
T Consensus 303 s~~~~~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~v~~~s~~dp~~aP~G~~~~~~~~~~~~~~~ 382 (502)
T TIGR02734 303 SLFVLYFGLLGVDGHWPQLAHHTLCFGPRYKELFDEIFRKGRLAEDPSLYLHRPTVTDPSLAPPGCENLYVLAPVPHLGT 382 (502)
T ss_pred eeeEEEEeeccccCcCCCcCceeEecCcCHHHHHHHHhcCCCCCCCCcEEEEcCCCCCCCCCCCCCccEEEEEeCCCCCC
Confidence 6788888888 44421 111111110 0 0123333 2355677889988766643 333332
Q ss_pred ---ccCCCChhHHHHHHHHHHHHh-CCCCcccccccceEEEEEEeecCCce-----------eecCC---CCCCCCCC-C
Q 009635 412 ---EWISCSDSEIIDATMKELAKL-FPDEISADQSKAKIVKYHVVKTPRSV-----------YKTIP---NCEPCRPL-Q 472 (530)
Q Consensus 412 ---~~~~~~~e~~~~~~~~~l~~~-~p~~~~~~~~~~~~~~~~~~~~p~~~-----------~~~~~---~~~~~~~~-~ 472 (530)
.|.. .++++.+.+++.|++. +|+.... +. +....+|.+. |+..+ +...++|. .
T Consensus 383 ~~~~~~~-~k~~~~~~il~~l~~~~~p~l~~~------i~-~~~~~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~rp~~~ 454 (502)
T TIGR02734 383 ADVDWSV-EGPRYRDRILAYLEERAIPGLRDR------IV-VERTFTPADFRDRYNAWLGSAFSLEHTLTQSAWFRPHNR 454 (502)
T ss_pred CCCCcHH-HHHHHHHHHHHHHHHhcCCChhHh------eE-EEEEcCHHHHHHhcCCCCccccchhhchhhcccCCCCCC
Confidence 2432 3577999999999998 8875432 33 3445555532 22211 12224453 3
Q ss_pred CCCCCceEEecccccCCCCCcHHHHHHHHHHHHHHHHHhhhhHh
Q 009635 473 RSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLLA 516 (530)
Q Consensus 473 ~~~~~~l~~aG~~~~~~~~~~i~gA~~sg~~aA~~vl~~~~~~~ 516 (530)
+++++|||+||+++.++ +++.+|+.||+.||++|+.+++...
T Consensus 455 ~t~i~gLyl~G~~~~pG--~Gv~g~~~sg~~~a~~il~~~~~~~ 496 (502)
T TIGR02734 455 DRKIDNLYLVGAGTHPG--AGVPGVLGSAKATAKLMLGDLAPGP 496 (502)
T ss_pred CCCCCCEEEeCCCCCCC--CCHHHHHHHHHHHHHHHHhhccCCC
Confidence 67899999999999886 6999999999999999998765544
No 24
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=100.00 E-value=1.7e-33 Score=266.07 Aligned_cols=427 Identities=22% Similarity=0.258 Sum_probs=252.1
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHCCC-cEEEEecCcccCceeeeeecCCCCEEeeeeceecCCcch-HHHHHHHcCCC
Q 009635 54 PSKPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPN-IQNLFGELGIN 131 (530)
Q Consensus 54 ~~~~~dVvIIGaG~aGl~aA~~L~~~G~-~V~vlEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~-~~~l~~~lg~~ 131 (530)
....++|||||||+|||+||.+|.+.|+ +|+|||+.+|+|||+.+....+| .+|+|++|++|...+ +.++.+++|..
T Consensus 18 ~~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti~~~d~-~ielGAqwihG~~gNpVY~la~~~g~~ 96 (498)
T KOG0685|consen 18 ARGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTIPFADG-VIELGAQWIHGEEGNPVYELAKEYGDL 96 (498)
T ss_pred ccCCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEeeEEcCCC-eEeecceeecCCCCChHHHHHHHhCcc
Confidence 4566799999999999999999998765 79999999999999999875455 999999999985554 89999988811
Q ss_pred CCcceeccceeeecCCCCCCcccccCCCCCCCchhh-HHHHHhcccCCChHHHHHhhhhhhhhhhcCcccccccCcccHH
Q 009635 132 DRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNG-ILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQ 210 (530)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 210 (530)
.. +........ + ..........+|..... +..+.... ... ..+.....+..|+.
T Consensus 97 ~~--~~~tg~~~~----~-~~~~~~~g~~V~~~~~~~~~~~~~~~---------------~~~---~r~~~~~~~~~SvG 151 (498)
T KOG0685|consen 97 KL--LEVTGPAYV----D-NFHTRSNGEVVPEELLDELNEITVTL---------------SDK---LREAEIAHDEGSVG 151 (498)
T ss_pred ce--eccCCcccc----c-eeEEEecCccCcHHHHHHHHHHHHhh---------------hhh---cccccccCccccHH
Confidence 10 000000000 0 00000001111211111 11111100 000 00000012234555
Q ss_pred HHHHHc--------CC---CHHHHHHHHHHHHhhcc---cC-CCCcccHHHHHHHHHHHHhhccC-CeEEeecCCCCccc
Q 009635 211 EWMRKQ--------GV---PDRVTTEVFIAMSKALN---FI-NPDELSMQCILIALNRFLQEKHG-SKMAFLDGNPPERL 274 (530)
Q Consensus 211 ~~l~~~--------~~---~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~gg~~~~l 274 (530)
+++... .. ..++...++..+..... +. +.++++.... ..+... .| -...+..-| ..++
T Consensus 152 ~~ln~~~~~~~~~~e~~~~~k~l~~~~~~~~~k~e~~~~~~d~l~evs~~~~----~ey~~~-~ge~~~~~~~kG-y~~i 225 (498)
T KOG0685|consen 152 EYLNSEFWDELRGPENPEIDKTLAEEILNVYFKVECSITGADNLSEVSLRAL----LEYTEC-PGEELLIWNKKG-YKRI 225 (498)
T ss_pred HHHHHHHHHHhccccccchhhHHHHHHHHHHHHHheeeeccCchhhhhhhhc----cceeec-CchhhheechhH-HHHH
Confidence 555531 00 11122222222222111 11 2222222111 111111 11 011111111 4555
Q ss_pred hHHHHHHHHHc----C--cEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHHHhhh---CCccccccHHH
Q 009635 275 CLPIVEHIQSL----G--GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQ---LPENWKEMAYF 345 (530)
Q Consensus 275 ~~~l~~~l~~~----g--~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~~~~l---l~~~~~~~~~~ 345 (530)
.+-|.+.+.+. | .+++++++|.+|..+..+.+ .|++.||+.+.||+||++++...+++- +..+..|..+.
T Consensus 226 L~~l~~~~p~~~i~~~~~~~~~~~~rv~~I~~~~~~~v-~l~c~dg~v~~adhVIvTvsLGvLk~~h~~lF~P~LP~~K~ 304 (498)
T KOG0685|consen 226 LKLLMAVIPAQNIELGLWKRIHLNTRVENINWKNTGEV-KLRCSDGEVFHADHVIVTVSLGVLKEQHHKLFVPPLPAEKQ 304 (498)
T ss_pred HHHHhccCCCcchhcCchhhhcccccceeeccCCCCcE-EEEEeCCcEEeccEEEEEeechhhhhhhhhhcCCCCCHHHH
Confidence 55555544432 2 35667799999997655654 699999999999999999999998883 22233467888
Q ss_pred HHHhccCCccEEEEEEEecccccccc-Cccc--cccCC---cce----eeeccCcccccccCCCccEEEEEeeC--cccc
Q 009635 346 KRLEKLVGVPVINIHIWFDRKLKNTY-DHLL--FSRSS---LLS----VYADMSLTCKEYYNPNQSMLELVFAP--AEEW 413 (530)
Q Consensus 346 ~~l~~~~~~~~~~v~~~~~~~~~~~~-~~~~--~~~~~---~~~----~~~~~s~~~~~~~~~~~~v~~~~~~~--~~~~ 413 (530)
++++++...++.|+++-|.+|||+.. ..+. +.+.. +.. ++.+.. .....+..+.++..++.+ +...
T Consensus 305 ~AIe~lgfGtv~KiFLE~E~pfwp~~~~~i~~lw~~e~l~e~r~~~~~w~~~~~--~f~~v~~~~~vL~gWiaG~~~~~m 382 (498)
T KOG0685|consen 305 RAIERLGFGTVNKIFLEFEEPFWPSDWNGIQLLWLDEDLEELRSTLDAWEEDIM--GFQPVSWAPNVLLGWIAGREARHM 382 (498)
T ss_pred HHHHhccCCccceEEEEccCCCCCCCCceeEEEEecCcHHHHhhhhHHHHhhce--EEEEcCcchhhhheeccCCcceeh
Confidence 99999999999999999999999752 2222 22222 000 000000 000111223566555554 3556
Q ss_pred CCCChhHHHHHHHHHHHHhCCCCcccccccceEEEEEEeecCC--ceeecCC-CCCC--------CCC-CCCCCCCceEE
Q 009635 414 ISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPR--SVYKTIP-NCEP--------CRP-LQRSPVEGFYL 481 (530)
Q Consensus 414 ~~~~~e~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~-~~~~--------~~~-~~~~~~~~l~~ 481 (530)
.++++|++.+.++..|++.+++...+. ..++.+..|...|. +.|+|.. +... ..| ...++-+.|.|
T Consensus 383 e~lsdEev~e~~~~~lr~fl~n~~iP~--p~kilRs~W~snp~frGSYSY~svgs~~~d~~~~a~p~p~~~~~~~p~I~F 460 (498)
T KOG0685|consen 383 ETLSDEEVLEGLTKLLRKFLKNPEIPK--PKKILRSQWISNPFFRGSYSYRSVGSDGSDTGALALPLPLTLVTGRPQILF 460 (498)
T ss_pred hhCCHHHHHHHHHHHHHHhcCCCCCCC--chhhhhhcccCCCccCceeeEeeccccccccchhhccCCccccCCCceEEE
Confidence 789999999999999999999644332 25688888888888 5576643 2111 111 12234568999
Q ss_pred ecccccCCCCCcHHHHHHHHHHHHHHHHHhhhhHhh
Q 009635 482 AGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLLAA 517 (530)
Q Consensus 482 aG~~~~~~~~~~i~gA~~sg~~aA~~vl~~~~~~~~ 517 (530)
||++++..++.+++||++||+|.|++|++.+.....
T Consensus 461 AGEaThr~~YsTthGA~~SG~REA~RL~~~y~~~~~ 496 (498)
T KOG0685|consen 461 AGEATHRTFYSTTHGAVLSGWREADRLLEHYESSTS 496 (498)
T ss_pred ccccccccceehhhhhHHhhHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999998876543
No 25
>PLN02976 amine oxidase
Probab=100.00 E-value=9.8e-33 Score=293.06 Aligned_cols=420 Identities=18% Similarity=0.197 Sum_probs=245.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceeeeeecCCCCEEeeeeceecCCcc--------h-HHHHHH
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYP--------N-IQNLFG 126 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~--------~-~~~l~~ 126 (530)
..+||+|||||++|+++|+.|.+.|++|+|||+++++||++.+.....|+.+|.|++++.+... + +..+++
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t~~~~~g~pvDlGas~i~G~~~nv~~~r~~np~~~la~ 771 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTDRSSLSVPVDLGASIITGVEADVATERRPDPSSLICA 771 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceeeccccCCceeccCcEEEecccccccccccccHHHHHHH
Confidence 4579999999999999999999999999999999999999988654468899999999876432 2 334678
Q ss_pred HcCCCCCcceeccceeeecCCCCCCcccccCCCCCCCchh-hHHHHHhcccCCChHHHHHhhhhhhhhhhcCcccccccC
Q 009635 127 ELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLN-GILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQD 205 (530)
Q Consensus 127 ~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (530)
++|+.....-.... .+.. ..+ ..++.... .+...+.. .+........ ... ....
T Consensus 772 qlGl~l~~~~~~~~-~yd~--~~G--------~~V~~e~~~~v~~~fn~--------lld~~~~~~~---~~g---~~a~ 826 (1713)
T PLN02976 772 QLGLELTVLNSDCP-LYDV--VTG--------EKVPADLDEALEAEYNS--------LLDDMVLLVA---QKG---EHAM 826 (1713)
T ss_pred hcCCccccccCCCc-eeEc--cCC--------cCCCHHHHHHHHHHHHH--------HHHHHHHHHh---hcc---cCcc
Confidence 88887532111100 0100 000 01111110 01110000 0000000000 000 0000
Q ss_pred cccHHHHHHHcC------------------------------------C----CHH----HHHHHHHHHHhhc---ccCC
Q 009635 206 GLTVQEWMRKQG------------------------------------V----PDR----VTTEVFIAMSKAL---NFIN 238 (530)
Q Consensus 206 ~~s~~~~l~~~~------------------------------------~----~~~----~~~~~~~~~~~~~---~~~~ 238 (530)
+.++.++|+... . ... ....++....... .+.+
T Consensus 827 d~SLgd~Le~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~G~~~er~s~~~~Ls~~er~lL~w~~~~lE~~~aa~ 906 (1713)
T PLN02976 827 KMSLEDGLEYALKRRRMPRPGVDIDETELGNAADDLYDSASTGVDGGHCEKESKEDVLSPLERRVMNWHFAHLEYGCAAL 906 (1713)
T ss_pred CCCHHHHHHHHHhhhhccccccccchhhcccchhhhhhhhhhcccccchhhhhHHHhhCHHHHHHHHHHHHhhcccccCC
Confidence 122222222100 0 000 0111111111111 1233
Q ss_pred CCcccHHHHHHHHHHHHhhccCCeEEeecCCCCccchHHHHHHHHHcCcEEEecceeeEEEecC--------CCCEEEEE
Q 009635 239 PDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELND--------DGTVKNFL 310 (530)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~gg~~~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~--------~g~~~~v~ 310 (530)
++++++..... ...+....|..+ .+.|| +..|++.|++.+ .|++|++|++|.+.. ++.-+.|+
T Consensus 907 L~eVSl~~~~q--d~~y~~fgG~~~-rIkGG-YqqLIeALAe~L-----~IrLNtpVtrId~s~~d~~~~~s~~dGVtVt 977 (1713)
T PLN02976 907 LKEVSLPYWNQ--DDVYGGFGGAHC-MIKGG-YSNVVESLAEGL-----DIHLNHVVTDVSYGSKDAGASGSSRKKVKVS 977 (1713)
T ss_pred HHHhhhhhhhc--ccccccCCCceE-EeCCC-HHHHHHHHHhhC-----CeecCCeEEEEEecCCcccccccCCCcEEEE
Confidence 44444331110 000111122233 34555 678888887754 599999999998731 12224688
Q ss_pred EcCCcEEecCEEEEccChHHHh--hhCCccccccHHHHHHhccCCccEEEEEEEecccccccc-Ccccc--ccCCcceee
Q 009635 311 LTNGNVIDGDAYVFATPVDILK--LQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTY-DHLLF--SRSSLLSVY 385 (530)
Q Consensus 311 ~~~G~~i~ad~VI~a~~~~~~~--~ll~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~-~~~~~--~~~~~~~~~ 385 (530)
|.+|+++.||+||+|+|+..+. .+...+.+|.....+++.+.+..+.||++.|+++||+.. +.+.. .+....+.+
T Consensus 978 TsDGetftADaVIVTVPLGVLKag~I~FsPPLPe~KqaAIqrLgfG~lnKV~LeFdrpFW~~d~d~FG~s~edtdlrG~~ 1057 (1713)
T PLN02976 978 TSNGSEFLGDAVLITVPLGCLKAETIKFSPPLPDWKYSSIQRLGFGVLNKVVLEFPEVFWDDSVDYFGATAEETDLRGQC 1057 (1713)
T ss_pred ECCCCEEEeceEEEeCCHHHhhhcccccCCcccHHHHHHHHhhccccceEEEEEeCCccccCCCCccccccccCCCCceE
Confidence 8999899999999999999987 344444456667788999999999999999999999753 21111 111122221
Q ss_pred eccCcccccccCCCccEEEEEeeC--ccccCCCChhHHHHHHHHHHHHhCCCCcccccccceEEEEEEeecCCc--eeec
Q 009635 386 ADMSLTCKEYYNPNQSMLELVFAP--AEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRS--VYKT 461 (530)
Q Consensus 386 ~~~s~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~e~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~p~~--~~~~ 461 (530)
+. .+....+.+..++..++.+ +..+..++++++++.+++.|+++||....+.+ ..+...+|...|++ .|.+
T Consensus 1058 ~~---~wnlr~psG~pVLVafv~G~aAreiEsLSDEE~Ve~ALe~LrKlFG~~~iPdP--v~~vvTrWssDPySrGSYSy 1132 (1713)
T PLN02976 1058 FM---FWNVKKTVGAPVLIALVVGKAAIDGQSMSSSDHVNHALMVLRKLFGEALVPDP--VASVVTDWGRDPFSYGAYSY 1132 (1713)
T ss_pred EE---eccCCCCCCCCEEEEEeccHhHHHHhhCCHHHHHHHHHHHHHHHcCcccccCc--ceeEEecCCCCCCcCccccC
Confidence 10 1111122344455444433 35566789999999999999999995322222 23445566666764 4544
Q ss_pred C-CCC-CCCCCCCCCCCCc-eEEecccccCCCCCcHHHHHHHHHHHHHHHHHhhhh
Q 009635 462 I-PNC-EPCRPLQRSPVEG-FYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVL 514 (530)
Q Consensus 462 ~-~~~-~~~~~~~~~~~~~-l~~aG~~~~~~~~~~i~gA~~sg~~aA~~vl~~~~~ 514 (530)
. +|. ......+..|++| |||||++++..|+|+|+||++||+|||++|+..|.+
T Consensus 1133 ~~PGs~~~d~d~LAePVggRLFFAGEATS~~~pGTVHGAIeSG~RAA~eIL~~L~~ 1188 (1713)
T PLN02976 1133 VAIGASGEDYDILGRPVENCLFFAGEATCKEHPDTVGGAMMSGLREAVRIIDILNT 1188 (1713)
T ss_pred CCCCCCchHHHHHhCCCCCcEEEEehhhhCCCcchHHHHHHHHHHHHHHHHHHHHc
Confidence 3 342 2233445678766 999999999999999999999999999999999865
No 26
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=100.00 E-value=1e-31 Score=275.96 Aligned_cols=433 Identities=18% Similarity=0.271 Sum_probs=256.1
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceeeeeecCCCCEEeeeeceecCC----cch-HHHHHHHcCCCC
Q 009635 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGA----YPN-IQNLFGELGIND 132 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~~----~~~-~~~l~~~lg~~~ 132 (530)
+||||||||++||+||..|+++|++|+||||+..+||+++++. .+|+.+|.|++.+.+. ..+ +.+.+..++...
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~-~~G~~fd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFE-REGYRFDVGASMIFGFGDKGTTNLLTRALAAVGRKL 79 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEec-cCCEEEEecchhheecCCcccccHHHHHHHHcCCcc
Confidence 5899999999999999999999999999999999999999986 5899999999987533 222 455666666432
Q ss_pred CcceeccceeeecCCCCCCcccccCCC-----------CCCCchhhHHHHHhccc----------CCChHHHHHhhhhhh
Q 009635 133 RLQWKEHSMIFAMPNKPGEFSRFDFPE-----------VLPAPLNGILAILRNNE----------MLTWPEKVKFAIGLL 191 (530)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~ 191 (530)
..........+..+ ++.. +.+.. ..|.....+..++.... ...+.........+.
T Consensus 80 ~~~~~~~~~~~~~~--~g~~--~~~~~d~~~~~~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (493)
T TIGR02730 80 ETIPDPVQIHYHLP--NGLN--VKVHREYDDFIQELVAKFPHEKEGIRRFYDECWQVFNCLNSMELLSLEEPRYLFRVFF 155 (493)
T ss_pred cccCCCccEEEECC--CCee--EeeecCHHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHHHhhhhccccChHHHHHHHh
Confidence 21111111112111 1110 11111 01222222222211100 000000000000000
Q ss_pred hhhhcCcccccccCcccHHHHHHHcCCCHHHHHHHHHHHHhhcccCCCCcccHHHHHHHHHHHHhhccCCeEEeecCCCC
Q 009635 192 PAIIGGQAYVEAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPP 271 (530)
Q Consensus 192 ~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~gg~~ 271 (530)
.... ....+......++.+++++....+ ....++..........++.+.+.......+. .... ..+.++.|| .
T Consensus 156 ~~~~-~~~~~~~~~~~s~~~~~~~~~~~~-~l~~~l~~~~~~~~~~p~~~~p~~~~~~~~~---~~~~-~g~~~~~gG-~ 228 (493)
T TIGR02730 156 KHPL-ACLGLAKYLPQNAGDIARRYIRDP-GLLKFIDIECFCWSVVPADQTPMINAGMVFS---DRHY-GGINYPKGG-V 228 (493)
T ss_pred hchh-hhhHHHHHhhccHHHHHHHhcCCH-HHHHHHHHHHHhccCCCcccchhhhHHHhhc---cccc-ceEecCCCh-H
Confidence 0000 000001112367788887764333 3444444333222223335555433322221 1122 235567777 6
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChH-HHhhhCCccccccHHHHHHhc
Q 009635 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQLPENWKEMAYFKRLEK 350 (530)
Q Consensus 272 ~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~-~~~~ll~~~~~~~~~~~~l~~ 350 (530)
..++++|.+.++++|++|+++++|++|..+ ++++.+|++.+|+++.||+||+|++++ ++.+|+++...+..+...+++
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~~~~~~~~~~~~~~~ 307 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIILE-NGKAVGVKLADGEKIYAKRIVSNATRWDTFGKLLKAENLPKKEKNWQRN 307 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEec-CCcEEEEEeCCCCEEEcCEEEECCChHHHHHHhCCccccchhhHHHHhh
Confidence 899999999999999999999999999874 567788999999889999999998765 555788765444444444455
Q ss_pred cCC-ccEEEEEEEecccccc---ccCccccc-----cCCcceeeec-cCcccccccCCCccEEEEEe-eCccccCCC---
Q 009635 351 LVG-VPVINIHIWFDRKLKN---TYDHLLFS-----RSSLLSVYAD-MSLTCKEYYNPNQSMLELVF-APAEEWISC--- 416 (530)
Q Consensus 351 ~~~-~~~~~v~~~~~~~~~~---~~~~~~~~-----~~~~~~~~~~-~s~~~~~~~~~~~~v~~~~~-~~~~~~~~~--- 416 (530)
+.. .+.+++++.++++... ...++++. ......++.. .+..++..+|+|++++.+.. .+...|..+
T Consensus 308 ~~~s~s~~~~~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~~ps~~dps~aP~G~~~i~~~~~~~~~~w~~~~~~ 387 (493)
T TIGR02730 308 YVKSPSFLSLHLGVKADVLPPGTECHHILLEDWTNLEKPQGTIFVSIPTLLDPSLAPEGHHIIHTFTPSSMEDWQGLSPK 387 (493)
T ss_pred ccCCCceEEEEEEecCccCCCCCCccEEecchhhccCCCCCeEEEEeCCCCCCCCCcCCcEEEEEecCCChhhccCCCcH
Confidence 544 3588899999875421 11112211 1112233333 34566788888988775432 233445322
Q ss_pred ----ChhHHHHHHHHHHHHhCCCCcccccccceEEEEEEeecCCce----------eecCCCC---CCCC-CCCCCCCCc
Q 009635 417 ----SDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSV----------YKTIPNC---EPCR-PLQRSPVEG 478 (530)
Q Consensus 417 ----~~e~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~p~~~----------~~~~~~~---~~~~-~~~~~~~~~ 478 (530)
.++++.+.+++.|++.+|+.... + .+....+|.+. |+..+.. ...+ +..+++++|
T Consensus 388 ~y~~~k~~~~~~il~~l~~~~p~l~~~------I-~~~~~~TP~t~~r~~~~~~G~~G~~~~~~~~~~~~~~~~~t~i~g 460 (493)
T TIGR02730 388 DYEAKKEADAERIIDRLEKIFPGLDSA------I-DYKEVGTPRTHRRFLGRDSGTYGPIPRRTLPGLLPMPFNRTAIPG 460 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCChhhc------E-EEEEeeCchhHHHHhCCCCcccCCcccccccccccCCCCCCCCCC
Confidence 24668899999999999875432 2 23445555542 2211111 0111 346789999
Q ss_pred eEEecccccCCCCCcHHHHHHHHHHHHHHHHHhh
Q 009635 479 FYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDY 512 (530)
Q Consensus 479 l~~aG~~~~~~~~~~i~gA~~sg~~aA~~vl~~~ 512 (530)
||+||+++.++ +++.+|+.||+.+|++|+.++
T Consensus 461 Lyl~G~~~~pG--~Gv~g~~~sG~~~a~~i~~~~ 492 (493)
T TIGR02730 461 LYCVGDSCFPG--QGLNAVAFSGFACAHRVAADL 492 (493)
T ss_pred eEEecCcCCCC--CCHHHHHHHHHHHHHHHHhhc
Confidence 99999999886 799999999999999999864
No 27
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=100.00 E-value=2.1e-33 Score=287.41 Aligned_cols=429 Identities=29% Similarity=0.389 Sum_probs=235.2
Q ss_pred hHHHHHHHHHHHCCCcEEEEecCcccCceeeeeecCC-CCEEeeeeceecCCcchHHHHHHHcCCCCCcceeccceeeec
Q 009635 67 LAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGD-GDWYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAM 145 (530)
Q Consensus 67 ~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~~~~~~-g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~ 145 (530)
||||+||++|+++|++|+|||+++++||++.++.... |+.+|.|++++.+.++.+..+++++++...............
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~~t~~~~~~g~~~e~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 80 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRIRTFRFDNPGFTFELGAHRFFGMYPNLLNLIDELGLELSLETFPFPQIPFV 80 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBTTS-EEEETTTTEEEESSS-EEETTSHHHHHHHHHHTHHTTEEEEEESSEEEE
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCcceEEecCCccceeecCCcccccccchhhHHHHHHhhhcccccccccccceee
Confidence 6999999999999999999999999999999988553 899999999999888889999999998644333322211110
Q ss_pred CCCCCCcccccCCCCCCCchhh---HHHHHhcccCCChHHHHHhhhhhhhhhhcCcccccccCcccHHHHHHHcCCCHHH
Q 009635 146 PNKPGEFSRFDFPEVLPAPLNG---ILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQGVPDRV 222 (530)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~ 222 (530)
................+..... ......... .+...........................++.+++......+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (450)
T PF01593_consen 81 YWPFGDGRPPWPPSQLPRNLNEFAALISLARFFR--LLERLNKLRQMLDPFFNKAEPEFLEDDLESFLEFLDSQSFSEIF 158 (450)
T ss_dssp EEEEEEEEEEEEECHHHHHHHHHHCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eccccccccccccccccccccchhhhhhcccccc--ccccccchhccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh
Confidence 0000000000000000000000 000000000 00000000000000000000011111223444444433222222
Q ss_pred HHHHHHHHHhhcccCCCCcccHHHHHHHHHHH-----HhhccCCeEEeecCCCCccchHHHHHHHHHcCcEEEecceeeE
Q 009635 223 TTEVFIAMSKALNFINPDELSMQCILIALNRF-----LQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQK 297 (530)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~g~~~~~~~gg~~~~l~~~l~~~l~~~g~~i~~~t~V~~ 297 (530)
....+...............+.......+... ........+....| .+...+...+...|++|++|++|++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~~~~~~~~~~~g~~i~l~~~V~~ 234 (450)
T PF01593_consen 159 RESLFRPFFFGAFGFLPDESSAALALLSFPHFDLQDNGGYFPFGGLTVGMG----GLSLALALAAEELGGEIRLNTPVTR 234 (450)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTHHHHHHHHHHCHHHHHHHHTTSSTEEEETT----TTHHHHHHHHHHHGGGEESSEEEEE
T ss_pred HHHHHHhhhhhhhccccchhhhhHHHhhhhhcccccccccccccceeeccc----chhHHHHHHHhhcCceeecCCccee
Confidence 22122222222222222333322111111111 00111222233332 3344455555556789999999999
Q ss_pred EEecCCCCEEEEEEcCCcEEecCEEEEccChHHHhh--hCCccccccHHHHHHhccCCccEEEEEEEecccccccc---C
Q 009635 298 IELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL--QLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTY---D 372 (530)
Q Consensus 298 I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~~~~--ll~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~---~ 372 (530)
|..++ +.+ .|++.+|+++.||+||+|+|.+.+.+ +.|.. +.....+++++.+.++.++++.|++++|... .
T Consensus 235 I~~~~-~~v-~v~~~~g~~~~ad~VI~a~p~~~l~~i~~~p~l--~~~~~~a~~~~~~~~~~~v~l~~~~~~~~~~~~~~ 310 (450)
T PF01593_consen 235 IERED-GGV-TVTTEDGETIEADAVISAVPPSVLKNILLLPPL--PEDKRRAIENLPYSSVSKVFLGFDRPFWPPDIDFF 310 (450)
T ss_dssp EEEES-SEE-EEEETTSSEEEESEEEE-S-HHHHHTSEEESTS--HHHHHHHHHTEEEEEEEEEEEEESSGGGGSTTTES
T ss_pred ccccc-ccc-ccccccceEEecceeeecCchhhhhhhhhcccc--cccccccccccccCcceeEEEeeeccccccccccc
Confidence 99854 444 68899998999999999999999895 44433 3345577788899999999999999998753 2
Q ss_pred ccccccC-CcceeeeccCcccccccCCCccEEEEEeeCc-cccCCCChhHHHHHHHHHHHHhCCCCcccccccceEEEEE
Q 009635 373 HLLFSRS-SLLSVYADMSLTCKEYYNPNQSMLELVFAPA-EEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYH 450 (530)
Q Consensus 373 ~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~e~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~ 450 (530)
.+++.+. .....+.+.+... .. +++..++.++..+. ..|..+++|++++.++++|++++|......+. .+...+
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~L~~~~~~~~~~~~~--~~~~~~ 386 (450)
T PF01593_consen 311 GILYSDGFSPIGYVSDPSKFP-GR-PGGGVLTSYVGGPDAPEWDDLSDEEILERVLDDLRKILPGASIPDPI--DITVTR 386 (450)
T ss_dssp EEEEESSTSSEEEEEEECCTT-SC-TTSEEEEEEEEHHHHHHHTTSCHHHHHHHHHHHHHHHHTTGGGGEES--EEEEEE
T ss_pred ceecccCccccccccccccCc-cc-ccCCcceeeeeccccchhcccchhhhHHHHHHHhhhccccccccccc--cccccc
Confidence 3333433 2222222222111 11 23333334444333 56788899999999999999999952211111 223334
Q ss_pred Eee--cCCceeecCCCCCC--CCCCCCCCC-CceEEecccccCCCCCcHHHHHHHHHHHHHHHH
Q 009635 451 VVK--TPRSVYKTIPNCEP--CRPLQRSPV-EGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIV 509 (530)
Q Consensus 451 ~~~--~p~~~~~~~~~~~~--~~~~~~~~~-~~l~~aG~~~~~~~~~~i~gA~~sg~~aA~~vl 509 (530)
|.. ++.+.|.+...... ..+.+++|+ +||||||||+++.+.++++||+.||++||++||
T Consensus 387 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~sG~~aA~~il 450 (450)
T PF01593_consen 387 WSRDPYPRGSYSYFPPGQSSQFRPALRTPIDPGLYFAGDWTSPGYPGGIEGAILSGRRAAEEIL 450 (450)
T ss_dssp CTTSTTTSSSCECHCTTHHHHHHHHHHSCBTTTEEE-SGGGSSSSTTSHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccCCcceEEEEeecccCCCCCCcHHHHHHHHHHHHHHhC
Confidence 433 33444444333222 455667787 699999999999877899999999999999986
No 28
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.97 E-value=4.6e-29 Score=231.93 Aligned_cols=428 Identities=19% Similarity=0.234 Sum_probs=277.7
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHCCCc--EEEEecCcccCceeeeeecCCCCEEeeeeceecCCcc---hHHHHHHHc
Q 009635 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHK--PLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYP---NIQNLFGEL 128 (530)
Q Consensus 54 ~~~~~dVvIIGaG~aGl~aA~~L~~~G~~--V~vlEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~---~~~~l~~~l 128 (530)
....++|+|||||++||++||+|++.+.+ |+|+|+.+|+||++++....+|+++|.|++.+.+..+ ...+++.++
T Consensus 8 ~~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dL 87 (491)
T KOG1276|consen 8 AVSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDL 87 (491)
T ss_pred ceecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHc
Confidence 34678999999999999999999999765 5679999999999999666789999999999987666 578999999
Q ss_pred CCCCCcceeccceeeecCCCCCCcccc-cCCCCCCCchhhHHHHHhcccCCChHHHHHhhhhhhhhhhcCcccccccCcc
Q 009635 129 GINDRLQWKEHSMIFAMPNKPGEFSRF-DFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGL 207 (530)
Q Consensus 129 g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (530)
|+++.+........ ....++ .+.+.++..-.++...... ...+....+. ..++... .....-....++
T Consensus 88 Gl~~e~~~i~~~~p-------aaknr~l~~~~~L~~vP~sl~~s~~~-~l~p~~k~L~--~a~l~e~-fr~~~~~~~~dE 156 (491)
T KOG1276|consen 88 GLEDELQPIDISHP-------AAKNRFLYVPGKLPTVPSSLVGSLKF-SLQPFGKPLL--EAFLREL-FRKKVSDPSADE 156 (491)
T ss_pred CccceeeecCCCCh-------hhhheeeccCcccccCCccccccccc-ccCcccchhH--HHHHhhh-ccccCCCCCccc
Confidence 99865443222111 000111 1111111111111110000 0000000000 0000000 000001234579
Q ss_pred cHHHHHHHcCCCHHHHHHHHHHHHhhcccCCCCcccHHHHHHHHHHHHhhccCC--------------------------
Q 009635 208 TVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGS-------------------------- 261 (530)
Q Consensus 208 s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-------------------------- 261 (530)
|+++|++++ +.+++.+..+++++.++++.++.++|+...+..+.... ..+|+
T Consensus 157 SV~sF~~Rr-fG~eV~d~~isp~i~GiyAgD~~~LSmk~~F~~l~~~E-qk~Gsi~~G~i~~~~~~~~~k~~e~~~~~~~ 234 (491)
T KOG1276|consen 157 SVESFARRR-FGKEVADRLISPFIRGIYAGDPSELSMKSSFGKLWKVE-QKHGSIILGTIRAKFARKRTKKAETALSAQA 234 (491)
T ss_pred cHHHHHHHh-hhHHHHHHHHHHHhCccccCChHHhhHHHHHHHHHHHH-HhccchhHHHHHHHHHhhcCCCccchhhhhh
Confidence 999999997 66889999999999999999999999987665443211 12221
Q ss_pred -----eEEeecCCCCccchHHHHHHHHHcCcEEEecceeeEEEecCCC-CEEEEEEcCCc-EEecCEEEEccChHHHhhh
Q 009635 262 -----KMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDG-TVKNFLLTNGN-VIDGDAYVFATPVDILKLQ 334 (530)
Q Consensus 262 -----~~~~~~gg~~~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g-~~~~v~~~~G~-~i~ad~VI~a~~~~~~~~l 334 (530)
...-.+|| .+.+.+++.+.|.+..+.|.+..++..+.....+ +...++..++. .+..+++..+.++..+.++
T Consensus 235 ~~e~~~~~sl~gG-le~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~~~~~~tl~~~~~~~~~~~~~~~~t~~~~k~a~l 313 (491)
T KOG1276|consen 235 KKEKWTMFSLKGG-LETLPKALRKSLGEREVSISLGLKLSGNSKSRSGNWSLTLVDHSGTQRVVVSYDAATLPAVKLAKL 313 (491)
T ss_pred cccccchhhhhhh-HhHhHHHHHHHhcccchhhhcccccccccccccCCceeEeEcCCCceeeeccccccccchHHhhhh
Confidence 01112334 6889999999998888999999999999865444 44455556664 3455666679999999999
Q ss_pred CCccccccHHHHHHhccCCccEEEEEEEeccc-c---ccccCccccc--cC--CcceeeeccCcccccccCCCccEEEEE
Q 009635 335 LPENWKEMAYFKRLEKLVGVPVINIHIWFDRK-L---KNTYDHLLFS--RS--SLLSVYADMSLTCKEYYNPNQSMLELV 406 (530)
Q Consensus 335 l~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~-~---~~~~~~~~~~--~~--~~~~~~~~~s~~~~~~~~~~~~v~~~~ 406 (530)
++... +....++.+++|.++..|++.|.++ . .++++.++.+ .. ...++.+|.. ..+...+++. ++.+.
T Consensus 314 l~~~~--~sls~~L~ei~y~~V~vVn~~yp~~~~~~pl~GFG~LvPs~~~~~~~~LG~ifdS~-~Fp~~~~s~~-vtvm~ 389 (491)
T KOG1276|consen 314 LRGLQ--NSLSNALSEIPYVPVAVVNTYYPKEKIDLPLQGFGLLVPSEPKNGFKTLGTIFDSM-LFPDRSPSPK-VTVMM 389 (491)
T ss_pred ccccc--hhhhhhhhcCCCCceEEEEEeccCcccccccccceeeccCCCCCCCceeEEEeecc-cCCCCCCCce-EEEEe
Confidence 98863 3556888999999999999999986 2 2456666652 22 3456666643 2334444433 33333
Q ss_pred eeC-cccc--CCCChhHHHHHHHHHHHHhCCCCcccccccceEEEEEEeecCCceeecCCCCCCCCCCC----CC-CCCc
Q 009635 407 FAP-AEEW--ISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQ----RS-PVEG 478 (530)
Q Consensus 407 ~~~-~~~~--~~~~~e~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~----~~-~~~~ 478 (530)
.+. ...| ...+.|++++.+.++|+++++....+ .......|+.+.+.|..|+....... .+ +-.+
T Consensus 390 gg~~~~n~~~~~~S~ee~~~~v~~alq~~Lgi~~~P-------~~~~v~l~~~ciPqy~vGh~~~le~a~~~l~~~~g~~ 462 (491)
T KOG1276|consen 390 GGGGSTNTSLAVPSPEELVNAVTSALQKMLGISNKP-------VSVNVHLWKNCIPQYTVGHDDVLEAAKSMLTDSPGLG 462 (491)
T ss_pred cccccccCcCCCCCHHHHHHHHHHHHHHHhCCCCCc-------ccccceehhhcccceecchHHHHHHHHHHHHhCCCCc
Confidence 222 2333 35578999999999999999864332 11223367777777777654433322 11 2248
Q ss_pred eEEecccccCCCCCcHHHHHHHHHHHHHHHH
Q 009635 479 FYLAGDYTKQKYLASMEGAVLSGKLCAQAIV 509 (530)
Q Consensus 479 l~~aG~~~~~~~~~~i~gA~~sg~~aA~~vl 509 (530)
|+++|.|+.. -++..+++||+++|.+|+
T Consensus 463 l~l~G~~y~G---v~vgdcI~sg~~~A~~v~ 490 (491)
T KOG1276|consen 463 LFLGGNHYGG---VSVGDCIESGRKTAVEVI 490 (491)
T ss_pred eEeeccccCC---CChhHHHHhhHHHHHhhc
Confidence 9999999887 489999999999999875
No 29
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.95 E-value=2.1e-26 Score=234.44 Aligned_cols=421 Identities=22% Similarity=0.277 Sum_probs=228.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceeeeeecCCCCEEeeeeceecCCcchHHHHHHHcC-CCCC-
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELG-INDR- 133 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg-~~~~- 133 (530)
+.+||||||||+.||+||..|+++|++|+||||++++||++++.. ..||.+|.|++++..... ..++++++ ++..
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e-~~Gf~fd~G~~~~~~~~~--~~~~~~l~~l~~~~ 78 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFE-LDGFRFDTGPSWYLMPDP--GPLFRELGNLDADG 78 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEe-ccceEeccCcceeecCch--HHHHHHhccCcccc
Confidence 468999999999999999999999999999999999999999987 459999999987763333 36667776 5433
Q ss_pred cceeccceeeecCCCCCCcccc---------cCCCCCCCchhhHHHHHhcccCCChHHHHHhhhh-hhhhhhc-----Cc
Q 009635 134 LQWKEHSMIFAMPNKPGEFSRF---------DFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIG-LLPAIIG-----GQ 198 (530)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~ 198 (530)
+.+......+......+..... .+....|.....+..++... .+....... +...... ..
T Consensus 79 l~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 153 (487)
T COG1233 79 LDLLPPDPAYRVFLPDGDAIDVYTDLEATAELLESLEPGDGEALARYLRLL-----ARLYELLAALLLAPPRSELLLVPD 153 (487)
T ss_pred eeeeccCCceeeecCCCCEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHH-----HHhhHHHHhhcCCCchhhhhhccc
Confidence 3333322222222222211100 00001111111111111100 000000000 0000000 00
Q ss_pred ---c--cccccCcccHHHHHHHcCCCHHHHHHHHHHHHhhcccCCCCcccHHHHHHHHHHHHhhccCCeEEeecCCCCcc
Q 009635 199 ---A--YVEAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPER 273 (530)
Q Consensus 199 ---~--~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~gg~~~~ 273 (530)
. ........+..+++... +..+..+..+........ .++.+.++. ..+.... .....+.++.|| +..
T Consensus 154 ~~~~~l~~~~~~~~~~~~~~~~~-f~~~~~r~~~~~~~~~~~-~~p~~~~a~---~~~~~~~--~~~~G~~~p~GG-~~a 225 (487)
T COG1233 154 TPERLLRLLGFSLTSALDFFRGR-FGSELLRALLAYSAVYGG-APPSTPPAL---YLLLSHL--GLSGGVFYPRGG-MGA 225 (487)
T ss_pred cHHHHHHHHHHhhhhHHHHHHHH-hcCHHHHHHHHHHHHhcC-CCCCchhHH---HHHHHHh--cccCCeeeeeCC-HHH
Confidence 0 00111234556666665 444444444443322223 455554411 1111222 233347788887 899
Q ss_pred chHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHHHhhhCCccccccHHHHHHhccCC
Q 009635 274 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVG 353 (530)
Q Consensus 274 l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~~~~ll~~~~~~~~~~~~l~~~~~ 353 (530)
++++|++.++++|++|+++++|++|.. ++|+.+++++.+|+.+++|.||++........+.++.... .+.... ...
T Consensus 226 l~~aL~~~~~~~Gg~I~~~~~V~~I~v-~~g~g~~~~~~~g~~~~ad~vv~~~~~~~~~~l~~~~~~~-~~~~~~--~~~ 301 (487)
T COG1233 226 LVDALAELAREHGGEIRTGAEVSQILV-EGGKGVGVRTSDGENIEADAVVSNADPALLARLLGEARRP-RYRGSY--LKS 301 (487)
T ss_pred HHHHHHHHHHHcCCEEECCCceEEEEE-eCCcceEEeccccceeccceeEecCchhhhhhhhhhhhhh-ccccch--hhh
Confidence 999999999999999999999999998 4655667888888789999999998775555555443210 000000 011
Q ss_pred ccEEEEEEEecc--------------ccccc----cCccccccCCcceee-eccCcccccccCCCccEE--EEEeeC-cc
Q 009635 354 VPVINIHIWFDR--------------KLKNT----YDHLLFSRSSLLSVY-ADMSLTCKEYYNPNQSML--ELVFAP-AE 411 (530)
Q Consensus 354 ~~~~~v~~~~~~--------------~~~~~----~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~v~--~~~~~~-~~ 411 (530)
.+.+...+.++. +++.. ++. .....+ .++ ...|..+++++|+|+..+ .....+ ..
T Consensus 302 ~~al~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~--~~~v~~ps~~Dps~AP~G~~~~~~~~~~~~~~~ 378 (487)
T COG1233 302 LSALSLYLGLKGDLLPLAHHTTILLGDTREQIEEAFDD-RAGRPP--PLYVSIPSLTDPSLAPEGKHSTFAQLVPVPSLG 378 (487)
T ss_pred hHHHHhccCCCCCCcchhhcceEecCCcHHHHHHHhhh-hcCCCC--ceEEeCCCCCCCccCCCCCcceeeeeeecCcCC
Confidence 111122222222 21111 111 111111 222 235668889999997622 222222 12
Q ss_pred ccCCCChhHHHHHHHHHHHHhCCCCcccccccceEEEEEEeecCCcee---e----cC-------CCCCCCCCCC-CCCC
Q 009635 412 EWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVY---K----TI-------PNCEPCRPLQ-RSPV 476 (530)
Q Consensus 412 ~~~~~~~e~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~---~----~~-------~~~~~~~~~~-~~~~ 476 (530)
.| ....+++.+. +..+++..|+..+. + ......+|...- . .. .+....+|.. ++|+
T Consensus 379 ~~-~~~~~~~~~~-~~~~~~~~p~~~~~------i-v~~~~~tp~~~e~~~~~~~G~~~~~~~~~~q~~~~rp~~~~t~i 449 (487)
T COG1233 379 DY-DELKESLADA-IDALEELAPGLRDR------I-VAREVLTPLDLERYLGLPGGDIFGGAHTLDQLGPFRPPPKSTPI 449 (487)
T ss_pred Ch-HHHHHHHHHH-HHHHhhcCCCcccc------e-eEEEEeChHHHHHhcCCCCCcccchhcChhhhcCCCCCCCCCCc
Confidence 22 2234555555 66788888875432 3 233444555321 1 00 1122234443 5889
Q ss_pred CceEEecccccCCCCCcHHHHHHHHHHHHHHHHH
Q 009635 477 EGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 510 (530)
Q Consensus 477 ~~l~~aG~~~~~~~~~~i~gA~~sg~~aA~~vl~ 510 (530)
+|||++|++++++ +++.++..++..++..+..
T Consensus 450 ~~LYl~Ga~t~PG--~Gv~g~~g~~~a~~~~~~~ 481 (487)
T COG1233 450 KGLYLVGASTHPG--GGVPGVPGSAAAVALLIDL 481 (487)
T ss_pred CceEEeCCcCCCC--CCcchhhhhHHHHHhhhcc
Confidence 9999999999998 8899997666666555543
No 30
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.95 E-value=8.2e-26 Score=204.46 Aligned_cols=284 Identities=20% Similarity=0.278 Sum_probs=192.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceeeeee---cCCCCEEeeeeceecC-CcchHHHHHHHcCCC
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWK---DGDGDWYETGLHIFFG-AYPNIQNLFGELGIN 131 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~~~---~~~g~~~d~G~~~~~~-~~~~~~~l~~~lg~~ 131 (530)
.+.+|+|||+|++||+|||.|+++ ++|+|+|+.+++||++++.. +..|+.+|+|.++..+ .|+++..+++.+|++
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~tYpnl~~Lf~~iGv~ 85 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNERTYPNLTRLFKTIGVD 85 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccccCCceeecceeEEecCCCcchHHHHHHHcCCC
Confidence 567999999999999999999886 89999999999999999974 5668899999999986 999999999999998
Q ss_pred CCcceeccceeeecCCCCCCcccccCCCCCCCchhhHHHHHhcccCCChHHHHHhhhhhhhhhhc--CcccccccCcccH
Q 009635 132 DRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIG--GQAYVEAQDGLTV 209 (530)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~s~ 209 (530)
.+.. .+.+.+....+.+ ++.... .+..++.....+.-+....++.+++..... .........+.++
T Consensus 86 t~as----~Msf~v~~d~ggl---Ey~g~t-----gl~~L~aqk~n~l~pRf~~mlaeiLrf~r~~~~~~d~~~~~~~tl 153 (447)
T COG2907 86 TKAS----FMSFSVSLDMGGL---EYSGLT-----GLAGLLAQKRNLLRPRFPCMLAEILRFYRSDLAPSDNAGQGDTTL 153 (447)
T ss_pred Cccc----ceeEEEEecCCce---eeccCC-----CccchhhccccccchhHHHHHHHHHHHhhhhccchhhhcCCCccH
Confidence 7532 2333332222222 111100 001111111111111122222222222211 1112223456899
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhhcccCCCCcccHHHHHHHHHHHHhh------ccCCeEEeecCCCCccchHHHHHHHH
Q 009635 210 QEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQE------KHGSKMAFLDGNPPERLCLPIVEHIQ 283 (530)
Q Consensus 210 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~g~~~~~~~gg~~~~l~~~l~~~l~ 283 (530)
.+||++++++..+..+++.++...+|..+..+++.......+ .+... ..-+.|+.+.|| ..+.++.|.+.+
T Consensus 154 ~~~L~~~~f~~af~e~~l~P~~aaiwstp~~d~~~~pa~~~~-~f~~nhGll~l~~rp~wrtV~gg-S~~yvq~laa~~- 230 (447)
T COG2907 154 AQYLKQRNFGRAFVEDFLQPLVAAIWSTPLADASRYPACNFL-VFTDNHGLLYLPKRPTWRTVAGG-SRAYVQRLAADI- 230 (447)
T ss_pred HHHHHhcCccHHHHHHhHHHHHHHHhcCcHhhhhhhhHHHHH-HHHhccCceecCCCCceeEcccc-hHHHHHHHhccc-
Confidence 999999999999999999999999998888887765443333 22221 222456666666 344455554433
Q ss_pred HcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHHHhhhCCccccccHHHHHHhccCCccEEEEEE
Q 009635 284 SLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHI 361 (530)
Q Consensus 284 ~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~v~~ 361 (530)
+.+|.++++|..|..-.+|.+ |+..+|++-++|.||+||.++....||++... ...+.+..+.|.....+..
T Consensus 231 --~~~i~t~~~V~~l~rlPdGv~--l~~~~G~s~rFD~vViAth~dqAl~mL~e~sp--~e~qll~a~~Ys~n~aVlh 302 (447)
T COG2907 231 --RGRIETRTPVCRLRRLPDGVV--LVNADGESRRFDAVVIATHPDQALALLDEPSP--EERQLLGALRYSANTAVLH 302 (447)
T ss_pred --cceeecCCceeeeeeCCCceE--EecCCCCccccceeeeecChHHHHHhcCCCCH--HHHHHHHhhhhhhceeEEe
Confidence 467999999999998888854 66778999999999999999988889888643 3345777777766655543
No 31
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=99.94 E-value=6.7e-24 Score=198.46 Aligned_cols=251 Identities=20% Similarity=0.239 Sum_probs=163.7
Q ss_pred cCCeEEeecCCCCccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEc-cChHHHhhhCCc
Q 009635 259 HGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFA-TPVDILKLQLPE 337 (530)
Q Consensus 259 ~g~~~~~~~gg~~~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a-~~~~~~~~ll~~ 337 (530)
+...|.|+.|| +..+..++++.++++|.+|+++..|.+|..+ +|++++|.+++|++++++.||+. ++..++.+|+|.
T Consensus 252 ~~g~~~Yp~GG-~Gavs~aia~~~~~~GaeI~tka~Vq~Illd-~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLlp~ 329 (561)
T KOG4254|consen 252 HKGGWGYPRGG-MGAVSFAIAEGAKRAGAEIFTKATVQSILLD-SGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLLPG 329 (561)
T ss_pred cCCcccCCCCC-hhHHHHHHHHHHHhccceeeehhhhhheecc-CCeEEEEEecCCcEEEeeeeecCCchHHHHHHhCCC
Confidence 44568899998 8999999999999999999999999999984 59999999999999999999985 566788899999
Q ss_pred cccccHHHHHHhccCCcc-EEE----EEEEeccc----cccccC------------ccccc------cCCcceee-eccC
Q 009635 338 NWKEMAYFKRLEKLVGVP-VIN----IHIWFDRK----LKNTYD------------HLLFS------RSSLLSVY-ADMS 389 (530)
Q Consensus 338 ~~~~~~~~~~l~~~~~~~-~~~----v~~~~~~~----~~~~~~------------~~~~~------~~~~~~~~-~~~s 389 (530)
+..+... .++++.+.+ +.+ .++..+.. .+.+.. +..+. .+..+.++ .-.|
T Consensus 330 e~LPeef--~i~q~d~~spv~k~~~psFl~~~~~~~~plph~~~~i~~~~ed~~~~H~~v~D~~~gl~s~~pvI~~siPS 407 (561)
T KOG4254|consen 330 EALPEEF--VIQQLDTVSPVTKDKLPSFLCLPNTKSLPLPHHGYTIHYNAEDTQAHHRAVEDPRNGLASHRPVIELSIPS 407 (561)
T ss_pred ccCCchh--hhhhcccccccccccCcceeecCCCCCCCCCccceeEEecCchHHHHHHHHhChhhcccccCCeEEEeccc
Confidence 8877654 444443322 221 23332211 111000 00000 01222232 2356
Q ss_pred cccccccCCCccEEEEEeeC-ccccCCCC-------hhHHHHHHHHHHHHhCCCCcccc---cccceEEEEEEeecCCce
Q 009635 390 LTCKEYYNPNQSMLELVFAP-AEEWISCS-------DSEIIDATMKELAKLFPDEISAD---QSKAKIVKYHVVKTPRSV 458 (530)
Q Consensus 390 ~~~~~~~~~~~~v~~~~~~~-~~~~~~~~-------~e~~~~~~~~~l~~~~p~~~~~~---~~~~~~~~~~~~~~p~~~ 458 (530)
..++..+|++++++..+... ..+|+... ++++.+++++.+++.+|+..... .........++..-|.+.
T Consensus 408 ~lDptlappg~Hvl~lf~~~t~~~w~g~~~~eye~~K~~~ae~~~~~ie~l~Pgfsssv~~~dvgTP~t~qr~l~~~~Gn 487 (561)
T KOG4254|consen 408 SLDPTLAPPGKHVLHLFTQYTPEEWEGGLKGEYETKKEAFAERVFSVIEKLAPGFSSSVESYDVGTPPTHQRFLGRPGGN 487 (561)
T ss_pred ccCCCcCCCCceEEEEeccCCccccccCCcccchHHHHHHHHHHHHHHHHHcCCccceEEEEecCCCchhhHHhcCCCCc
Confidence 67888999999998765432 25565332 47899999999999999854321 000111112222333333
Q ss_pred eec-CCC---CCCCCCCC-----CCCCCceEEecccccCCCCCcHHHHHHHHHHHHHHHHHhhhhHhh
Q 009635 459 YKT-IPN---CEPCRPLQ-----RSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLLAA 517 (530)
Q Consensus 459 ~~~-~~~---~~~~~~~~-----~~~~~~l~~aG~~~~~~~~~~i~gA~~sg~~aA~~vl~~~~~~~~ 517 (530)
+.. ..+ ....+|-. ++|+++||+||+.+.++ |++.+|- |+.+|..++.+.+...+
T Consensus 488 ~~~~~~~ld~g~l~~Pv~~~s~y~tPI~~LYlcGs~afPG--gGV~a~a--G~~~A~~a~~~~~~~~~ 551 (561)
T KOG4254|consen 488 IFHGAMGLDQGYLHRPVMAWSNYSTPIPGLYLCGSGAFPG--GGVMAAA--GRLAAHSAILDRKLYSD 551 (561)
T ss_pred ccCcccccccccccCCccccccCCCCCCceEEecCCCCCC--CCccccc--hhHHHHHHhhhhhhHHH
Confidence 222 111 11233443 88999999999999997 8888885 99999988877664433
No 32
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.93 E-value=1e-25 Score=197.36 Aligned_cols=324 Identities=20% Similarity=0.256 Sum_probs=203.8
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceeeeeecCCCCEEeeeeceecCCcchHHHHHHHcCCCCCc-ce
Q 009635 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRL-QW 136 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~~-~~ 136 (530)
.+|+|||+||+||+||+.|+.+|.+|+|+||..-+|||..+.. ..+..+|.|+++|....+.+.++++.+.-+--. .|
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRR-l~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W 80 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRR-LDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVW 80 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheec-cCCccccccceeecCCchHHHHHHHHHHhCCceeec
Confidence 4799999999999999999999999999999999999998865 456669999999976666555555444221100 00
Q ss_pred eccceeeecCCCCCCcccccCCCCCCCchhhHHHHHhcccCCChHHHHHhhhhhhhhhhcCcccccccCcccHHHHHHHc
Q 009635 137 KEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQ 216 (530)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~ 216 (530)
.+ . .+.+.+ .
T Consensus 81 ~~-----------~---~~~~~~-------------------------------------------------------~- 90 (331)
T COG3380 81 TP-----------A---VWTFTG-------------------------------------------------------D- 90 (331)
T ss_pred cc-----------c---cccccc-------------------------------------------------------C-
Confidence 00 0 000000 0
Q ss_pred CCCHHHHHHHHHHHHhhcccCCCCcccHHHHHHHHHHHHhhccCCeEEeecCCCCccchHHHHHHHHHcCcEEEecceee
Q 009635 217 GVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQ 296 (530)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~gg~~~~l~~~l~~~l~~~g~~i~~~t~V~ 296 (530)
+.+ ...++.+ |+.-.++. +|++.|. ...+|.++++|+
T Consensus 91 ~~~-----------------~~~d~~p---------------------yvg~pgms----alak~LA-tdL~V~~~~rVt 127 (331)
T COG3380 91 GSP-----------------PRGDEDP---------------------YVGEPGMS----ALAKFLA-TDLTVVLETRVT 127 (331)
T ss_pred CCC-----------------CCCCCCc---------------------cccCcchH----HHHHHHh-ccchhhhhhhhh
Confidence 000 0011110 11100022 3444332 347899999999
Q ss_pred EEEecCCCCEEEEEEcCC-cEEecCEEEEccChHHHhhhCCc--cccccHHHHHHhccCCccEEEEEEEeccccccccCc
Q 009635 297 KIELNDDGTVKNFLLTNG-NVIDGDAYVFATPVDILKLQLPE--NWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTYDH 373 (530)
Q Consensus 297 ~I~~~~~g~~~~v~~~~G-~~i~ad~VI~a~~~~~~~~ll~~--~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~ 373 (530)
+|...++. +.+++.+| +...+|.||+|+|+..+..||.. ...+...+..+..+.|.++..+.+.|..+...++.+
T Consensus 128 ~v~~~~~~--W~l~~~~g~~~~~~d~vvla~PAPQ~~~LLt~~~~~~p~~l~~~~a~V~y~Pc~s~~lg~~q~l~~P~~G 205 (331)
T COG3380 128 EVARTDND--WTLHTDDGTRHTQFDDVVLAIPAPQTATLLTTDADDLPAALRAALADVVYAPCWSAVLGYPQPLDRPWPG 205 (331)
T ss_pred hheecCCe--eEEEecCCCcccccceEEEecCCCcchhhcCcccccchHHHHHhhccceehhHHHHHhcCCccCCCCCCC
Confidence 99986554 46888665 56889999999999887888744 334556778888899999988889998887666555
Q ss_pred cccccCCcceeeeccCcccccccCCCccEEEEEeeC--ccccCCCChhHHHHHHHHHHHHhCCCCcccccccceEEEEEE
Q 009635 374 LLFSRSSLLSVYADMSLTCKEYYNPNQSMLELVFAP--AEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHV 451 (530)
Q Consensus 374 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~e~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~ 451 (530)
....+.++-.+-.+. ..+...|.+...+ +-.++ .......++|..++.+........++.... ......
T Consensus 206 ~~vdg~~laWla~d~--sK~g~~p~~~~~v-vqasp~wSr~h~~~~~e~~i~~l~aA~~~~~~~~~~~------p~~s~~ 276 (331)
T COG3380 206 NFVDGHPLAWLARDA--SKKGHVPDGEIWV-VQASPDWSREHLDHPAEQVIVALRAAAQELDGDRLPE------PDWSDA 276 (331)
T ss_pred cccCCCeeeeeeccc--cCCCCCCcCceEE-EEeCchHHHHhhcCCHHHHHHHHHHhhhhccCCCCCc------chHHHh
Confidence 444555543333332 2344555555322 21111 122235677888888888888887742211 111223
Q ss_pred eecCCceeecCCCCCCCCCCCCCCCCceEEecccccCCCCCcHHHHHHHHHHHHHHHHHhh
Q 009635 452 VKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDY 512 (530)
Q Consensus 452 ~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~i~gA~~sg~~aA~~vl~~~ 512 (530)
++|+++.+....+.. +-...+-.+||+||||+.. |-+|||++||..+|++|++.|
T Consensus 277 H~WrYA~P~~~~~~~---~L~ad~~~~l~~cGDwc~G---grVEgA~LSGlAaA~~i~~~L 331 (331)
T COG3380 277 HRWRYAIPNDAVAGP---PLDADRELPLYACGDWCAG---GRVEGAVLSGLAAADHILNGL 331 (331)
T ss_pred hccccccccccccCC---ccccCCCCceeeecccccC---cchhHHHhccHHHHHHHHhcC
Confidence 455555443222111 1111234479999999998 689999999999999998764
No 33
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.86 E-value=1.7e-18 Score=173.39 Aligned_cols=259 Identities=19% Similarity=0.235 Sum_probs=157.6
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHC----CCcEEEEecCcccCceeeeeec-CCCCEEeeeeceecCCcchHHHHHHHc
Q 009635 54 PSKPLKVVIAGAGLAGLSTAKYLADA----GHKPLLLEARDVLGGKIAAWKD-GDGDWYETGLHIFFGAYPNIQNLFGEL 128 (530)
Q Consensus 54 ~~~~~dVvIIGaG~aGl~aA~~L~~~----G~~V~vlEa~~~~GG~~~~~~~-~~g~~~d~G~~~~~~~~~~~~~l~~~l 128 (530)
.++..+|+|||||++||+||++|++. |.+|+|||+++.+||++.++.. .+|+.++.|.. +...+..+.++++++
T Consensus 19 ~~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~~~Gy~~~~G~~-~~~~y~~l~~ll~~i 97 (576)
T PRK13977 19 GVDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNPEKGYVARGGRE-MENHFECLWDLFRSI 97 (576)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCcccccCCEEEECCCC-ccchHHHHHHHHHhc
Confidence 34568999999999999999999995 6899999999999999987542 46888877755 466777888888887
Q ss_pred CCCCCcceeccceeeecCCCCCCc--ccccCCCCCCCchhhHHHHHhcccCCChHHHHHhhhhhhhhhhcCcccccccCc
Q 009635 129 GINDRLQWKEHSMIFAMPNKPGEF--SRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDG 206 (530)
Q Consensus 129 g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (530)
.-.........+.+.......... .++.+.++.. + ....+.+..+.+. .+...... ...++++
T Consensus 98 psle~~g~sv~dd~~~~~~~~p~~s~~Rl~~~~g~~---------~-d~~~~~L~~k~r~--~Ll~l~l~---~e~~Ld~ 162 (576)
T PRK13977 98 PSLEDPGASVLDEFYWFNKDDPNYSKARLIHKRGEI---------L-DTDKFGLSKKDRK--ELLKLLLT---PEEKLDD 162 (576)
T ss_pred cccCCCCcccccceeeeecCCcccceeeEEcCCCCE---------E-ECcCCCCCHHHHH--HHHHHhcc---CHHHhCC
Confidence 422211000000011100000000 0111111000 0 0011122222111 11111111 1235677
Q ss_pred ccHHHHHHHcCCCHHHHHHHHHHHHhhcccCCCCcccHHHHHHHHHHHHhhc----cCCeEEeecCCCCccchHHHHHHH
Q 009635 207 LTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEK----HGSKMAFLDGNPPERLCLPIVEHI 282 (530)
Q Consensus 207 ~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~~~gg~~~~l~~~l~~~l 282 (530)
.++.+|+.+..+... ...++..+ ++.. ...|+......+..++... ....+.+...+..+.++..|.+.|
T Consensus 163 ~tI~d~f~~~Ff~t~-Fw~~w~t~----FaF~-~whSA~E~rry~~rf~~~~~~l~~~s~l~ft~ynqyeSLV~PL~~~L 236 (576)
T PRK13977 163 KTIEDWFSPEFFETN-FWYYWRTM----FAFE-KWHSALEMRRYMHRFIHHIGGLPDLSGLKFTKYNQYESLVLPLIKYL 236 (576)
T ss_pred cCHHHHHhhcCchhH-HHHHHHHH----HCCc-hhhHHHHHHHHHHHHHHhhccCCccccccCCCCCchhHHHHHHHHHH
Confidence 899999998655432 22333333 3333 6667777777776664432 233455566666789999999999
Q ss_pred HHcCcEEEecceeeEEEec-CC--CCEEEEEEc-CCc-----EEecCEEEEccChHHHhhh
Q 009635 283 QSLGGEVRLNSRVQKIELN-DD--GTVKNFLLT-NGN-----VIDGDAYVFATPVDILKLQ 334 (530)
Q Consensus 283 ~~~g~~i~~~t~V~~I~~~-~~--g~~~~v~~~-~G~-----~i~ad~VI~a~~~~~~~~l 334 (530)
+++||+|+++++|++|..+ ++ +++++|... +|+ ...+|.||+|+|..+-..-
T Consensus 237 e~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~ns~ 297 (576)
T PRK13977 237 EDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITESST 297 (576)
T ss_pred HhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCccccc
Confidence 9999999999999999974 23 567788775 332 3568899999987654443
No 34
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=99.79 E-value=2.8e-17 Score=163.52 Aligned_cols=258 Identities=15% Similarity=0.197 Sum_probs=158.0
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceeeeeec-------------------CCCCEEeeeeceec
Q 009635 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKD-------------------GDGDWYETGLHIFF 115 (530)
Q Consensus 55 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~~~~-------------------~~g~~~d~G~~~~~ 115 (530)
++.+||||||+|++|+.+|..|++.|++|+++|++++.||+.++... ...+.+|+.++++.
T Consensus 2 ~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~l~~l~~~f~~~~~~~~~~~~~r~~~iDL~Pk~l~ 81 (443)
T PTZ00363 2 DETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPGETPPESLGRNRDWNVDLIPKFIM 81 (443)
T ss_pred CCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccccHHHHHHhhcccCCCchhcccccccccccCCeeee
Confidence 46799999999999999999999999999999999999999998521 02233455555554
Q ss_pred CCcchHHHHHHHcCCCCCcceeccceeeecCCCCCCcccccCCCCCCCchhhHHHHHhcccCCChHHHHHhhhhhhhhhh
Q 009635 116 GAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAII 195 (530)
Q Consensus 116 ~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (530)
.. ..+..++.+.++...+.+......+.+. .++++.. .|.. -...+. ...+.+.++.+.. .++....
T Consensus 82 ~~-G~lv~lL~~s~v~ryleF~~l~g~~v~~-~~g~~~~------vP~s---~~~~~~-s~ll~l~eKr~l~-kfl~~v~ 148 (443)
T PTZ00363 82 AS-GELVKILLHTDVTRYLEFKVIDGSYVYQ-KEGKIHK------VPAT---DMEALS-SPLMGFFEKNRCK-NFLQYVS 148 (443)
T ss_pred cC-ChHHHHHhhcCccceeeeEEeceEEEEe-cCCeEEE------CCCC---HHHHhh-CCCcchhhHHHHH-HHHHHHH
Confidence 32 4466788888888777665544333321 1222211 1111 111111 1222333332221 1111111
Q ss_pred ---cCcc-ccc--ccCcccHHHHHHHcCCCHHHHHHHHHHHHhhcccCCCCcccHHHHHHHHHHHHh--hccC-CeEEee
Q 009635 196 ---GGQA-YVE--AQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQ--EKHG-SKMAFL 266 (530)
Q Consensus 196 ---~~~~-~~~--~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g-~~~~~~ 266 (530)
.... ... ..+..++.+|+++.++++...+.+...+.. .......+.+....+..+..+.. ..+| ..+.|+
T Consensus 149 ~~~~~~~~~~~~~~~d~~T~~d~L~~~~ls~~~~d~i~~~ial-~~~~~~~~~pa~~tl~ri~~y~~S~~~~g~~p~~yp 227 (443)
T PTZ00363 149 NYDENDPETHKGLNLKTMTMAQLYKKFGLEDNTIDFVGHAVAL-YTNDDYLNKPAIETVMRIKLYMDSLSRYGKSPFIYP 227 (443)
T ss_pred hhccCChhhhcccCcccCCHHHHHHHhCCCHHHHHHHHHHHHh-hcccccccCCHHHHHHHHHHHHHHHhhccCCcceee
Confidence 1000 111 134579999999999887765533222221 11111112223333333333332 2233 234667
Q ss_pred cCCCCccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccC
Q 009635 267 DGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATP 327 (530)
Q Consensus 267 ~gg~~~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~ 327 (530)
.|| ...|+++|++.+...|++++++++|++|..++++++++|++.+|++++|++||+...
T Consensus 228 ~gG-~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s 287 (443)
T PTZ00363 228 LYG-LGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPS 287 (443)
T ss_pred CCC-HHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcc
Confidence 776 789999999999999999999999999998666778889999999999999998443
No 35
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.78 E-value=7e-18 Score=171.93 Aligned_cols=61 Identities=20% Similarity=0.226 Sum_probs=51.3
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHHHhhhCC
Q 009635 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLP 336 (530)
Q Consensus 271 ~~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~~~~ll~ 336 (530)
|.+++.+|++.++++|++|+.+++|++|.. ++. +.|+|.+| +++||+||+|++.|+ ..+++
T Consensus 182 P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~--~~v~t~~g-~v~A~~VV~Atga~s-~~l~~ 242 (460)
T TIGR03329 182 PGLLVRGLRRVALELGVEIHENTPMTGLEE-GQP--AVVRTPDG-QVTADKVVLALNAWM-ASHFP 242 (460)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEee-CCc--eEEEeCCc-EEECCEEEEcccccc-cccCh
Confidence 789999999999999999999999999975 332 35888888 799999999999986 34443
No 36
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.73 E-value=5.1e-17 Score=152.47 Aligned_cols=168 Identities=24% Similarity=0.372 Sum_probs=111.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceeeeeecCCCCEEeeeeceecCCcchHHHHHHHcCCCCCcc
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQ 135 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~~~ 135 (530)
+.+||+|||||+|||.||..++++|++|+|+|+.+.+|=++.- .-|+.+.........+++.+++-.
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~---------sGgGrCN~Tn~~~~~~~ls~~p~~---- 68 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILM---------SGGGRCNFTNSEAPDEFLSRNPGN---- 68 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEe---------cCCCCccccccccHHHHHHhCCCc----
Confidence 4689999999999999999999999999999999998865543 123333222222255555544311
Q ss_pred eeccceeeecCCCCCCcccccCCCCCCCchhhHHHHHhcccCCChHHHHHhhhhhhhhhhcCcccccccCcccHHHHHHH
Q 009635 136 WKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRK 215 (530)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~ 215 (530)
+.+ +... +...+..++.+|+..
T Consensus 69 --------------~~f---------------l~sa-----------------------------l~~ft~~d~i~~~e~ 90 (408)
T COG2081 69 --------------GHF---------------LKSA-----------------------------LARFTPEDFIDWVEG 90 (408)
T ss_pred --------------chH---------------HHHH-----------------------------HHhCCHHHHHHHHHh
Confidence 000 0000 112234677888887
Q ss_pred cCCCHHHHHHHHHHHHhhcccCCCCcccHHHHHHHHHHHHhhccCCeEEeecCCCCccchHHHHHHHHHcCcEEEeccee
Q 009635 216 QGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRV 295 (530)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~gg~~~~l~~~l~~~l~~~g~~i~~~t~V 295 (530)
+|+.... + ..|- .|+.......+++.|.+.+++.||+|+++++|
T Consensus 91 ~Gi~~~e-----------------~-----------------~~Gr--~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v 134 (408)
T COG2081 91 LGIALKE-----------------E-----------------DLGR--MFPDSDKASPIVDALLKELEALGVTIRTRSRV 134 (408)
T ss_pred cCCeeEE-----------------c-----------------cCce--ecCCccchHHHHHHHHHHHHHcCcEEEecceE
Confidence 7654221 0 1111 11211114678899999999999999999999
Q ss_pred eEEEecCCCCEEEEEEcCCcEEecCEEEEccChHHHh
Q 009635 296 QKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILK 332 (530)
Q Consensus 296 ~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~~~ 332 (530)
.+|+.++++ ..|.+++|++|+||.+|+|++.-+..
T Consensus 135 ~~v~~~~~~--f~l~t~~g~~i~~d~lilAtGG~S~P 169 (408)
T COG2081 135 SSVEKDDSG--FRLDTSSGETVKCDSLILATGGKSWP 169 (408)
T ss_pred EeEEecCce--EEEEcCCCCEEEccEEEEecCCcCCC
Confidence 999985433 46899999889999999999844433
No 37
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.71 E-value=3.7e-16 Score=157.48 Aligned_cols=59 Identities=17% Similarity=0.126 Sum_probs=50.4
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHH
Q 009635 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (530)
Q Consensus 271 ~~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (530)
+..++.+|++.+.++|++++.+++|++|+..+++.++.|+|.+| ++.|++||+|++.+.
T Consensus 182 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~ 240 (407)
T TIGR01373 182 HDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHS 240 (407)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhh
Confidence 56778888999999999999999999998644566667888888 799999999998875
No 38
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.69 E-value=7.7e-17 Score=159.99 Aligned_cols=62 Identities=27% Similarity=0.396 Sum_probs=51.4
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHHHhhhC
Q 009635 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQL 335 (530)
Q Consensus 271 ~~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~~~~ll 335 (530)
+.++++.|.+.++++|++|+.+++|++|..+ ++.+.+|++.+|+ ++||+||+|+++++ ..|+
T Consensus 146 ~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~-~~~v~gv~~~~g~-i~ad~vV~a~G~~s-~~l~ 207 (358)
T PF01266_consen 146 PRRLIQALAAEAQRAGVEIRTGTEVTSIDVD-GGRVTGVRTSDGE-IRADRVVLAAGAWS-PQLL 207 (358)
T ss_dssp HHHHHHHHHHHHHHTT-EEEESEEEEEEEEE-TTEEEEEEETTEE-EEECEEEE--GGGH-HHHH
T ss_pred ccchhhhhHHHHHHhhhhccccccccchhhc-ccccccccccccc-cccceeEecccccc-eeee
Confidence 6899999999999999999999999999984 5556679999995 99999999999987 3343
No 39
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.68 E-value=1.4e-15 Score=154.07 Aligned_cols=58 Identities=24% Similarity=0.330 Sum_probs=50.1
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHH
Q 009635 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (530)
Q Consensus 271 ~~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (530)
+..++..|.+.+.++|++|+++++|++|+.+ ++.++.|++.+| ++.||+||+|++.++
T Consensus 200 p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~v~t~~~-~~~a~~VV~a~G~~~ 257 (416)
T PRK00711 200 CQLFTQRLAAMAEQLGVKFRFNTPVDGLLVE-GGRITGVQTGGG-VITADAYVVALGSYS 257 (416)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCEEEEEEeCCc-EEeCCEEEECCCcch
Confidence 6788999999999999999999999999874 445556777777 799999999999986
No 40
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=99.68 E-value=1.9e-14 Score=139.95 Aligned_cols=241 Identities=16% Similarity=0.150 Sum_probs=136.7
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceeeeeecCCCCE-EeeeeceecCCcchHHHHHHHcCCCCCcc
Q 009635 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDW-YETGLHIFFGAYPNIQNLFGELGINDRLQ 135 (530)
Q Consensus 57 ~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~~~~~~g~~-~d~G~~~~~~~~~~~~~l~~~lg~~~~~~ 135 (530)
++||+|||||++|+++|+.|++.|.+|+|+|+++.+||.+.+... .|.. .+.|+|++......+.+++.++.-...
T Consensus 1 ~~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~~~-~g~~~~~~G~h~f~t~~~~v~~~~~~~~~~~~-- 77 (377)
T TIGR00031 1 MFDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEVD-ETILFHQYGPHIFHTNNQYVWDYISPFFELNN-- 77 (377)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeeecC-CCceEEeecceeEecCcHHHHHHHHhhccccc--
Confidence 369999999999999999999999999999999999999887543 4444 589999998777777777776531111
Q ss_pred eeccceeeecCCCCCCcccccCCCCCCCchhhHHHHHhcccCCChHHHHHhhhhhhhhhhcCcccccccCcccHHHHH--
Q 009635 136 WKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWM-- 213 (530)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l-- 213 (530)
+... .... ..+.+..+. -..+.+..+.... .. ..+...+........ .....++++|.
T Consensus 78 ~~~~-~~~~---~~g~~~~~P------~~~~~i~~l~~~~----~~---~~~~~~l~~~~~~~~---~~~~~~~~e~~d~ 137 (377)
T TIGR00031 78 YQHR-VLAL---YNNLDLTLP------FNFNQFRKLLGVK----DA---QELQNFFNAQFKYGD---HVPLEELQEIADP 137 (377)
T ss_pred eeEE-EEEE---ECCeEEccC------CCHHHHHHhcccc----hH---HHHHHHHHHHhhccc---CCCCCCHHHHHHH
Confidence 1111 1111 122222222 2222233322110 00 111111111000000 00113344444
Q ss_pred -HHcCCCHHHHHHHHHHHHhhcccCCCCcccHHHHHHHHHHHHhh--cc--CCeEEeecCCCCccchHHHHHHHHHc-Cc
Q 009635 214 -RKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQE--KH--GSKMAFLDGNPPERLCLPIVEHIQSL-GG 287 (530)
Q Consensus 214 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--g~~~~~~~gg~~~~l~~~l~~~l~~~-g~ 287 (530)
.+. +...+.+.++.++....|+.++++++..... .+.-.+.. .+ ..-..++.+| .+.|.+.+.++ ++
T Consensus 138 ~~~~-~G~~lye~ff~~Yt~K~Wg~~p~el~~~~~~-RvP~~~~~d~~yf~d~~q~~P~~G-----yt~~~~~ml~~~~i 210 (377)
T TIGR00031 138 DIQL-LYQFLYQKVYKPYTVKQWGLPAEEIDPFVIG-RVPVVLSEDSSYFPDRYQGLPKGG-----YTKLFEKMLDHPLI 210 (377)
T ss_pred HHHH-HHHHHHHHhccccCceeeCCChHHCCHHHeE-ecceEecCCCCccccccccccccc-----HHHHHHHHHhcCCC
Confidence 443 5677888899999999999999999876432 11110110 01 1112334433 45555555443 69
Q ss_pred EEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHHHhh
Q 009635 288 EVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL 333 (530)
Q Consensus 288 ~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~~~~ 333 (530)
+|++|+.+..+.. .+++ +....+ .+. +.||.|.|...+-.
T Consensus 211 ~v~l~~~~~~~~~-~~~~---~~~~~~-~~~-~~vi~Tg~id~~f~ 250 (377)
T TIGR00031 211 DVKLNCHINLLKD-KDSQ---LHFANK-AIR-KPVIYTGLIDQLFG 250 (377)
T ss_pred EEEeCCccceeec-cccc---eeeccc-ccc-CcEEEecCchHHHh
Confidence 9999997777764 2332 333444 344 88999877765443
No 41
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.66 E-value=4.8e-15 Score=148.30 Aligned_cols=57 Identities=21% Similarity=0.213 Sum_probs=48.6
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHH
Q 009635 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (530)
Q Consensus 271 ~~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (530)
+..+++.|.+.++++|++++.+++|++|..+ ++.+ .|++.+| ++.||+||+|++.+.
T Consensus 144 p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~-~~~~-~v~~~~~-~i~a~~vV~aaG~~~ 200 (380)
T TIGR01377 144 AEKALRALQELAEAHGATVRDGTKVVEIEPT-ELLV-TVKTTKG-SYQANKLVVTAGAWT 200 (380)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEEec-CCeE-EEEeCCC-EEEeCEEEEecCcch
Confidence 6788899999999999999999999999874 4433 5778777 799999999999875
No 42
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.66 E-value=2.6e-15 Score=147.91 Aligned_cols=59 Identities=29% Similarity=0.418 Sum_probs=42.2
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHH
Q 009635 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (530)
Q Consensus 271 ~~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (530)
...+++.|.+.++++|++|+++++|.+|+.+++ .+..|++.+++++.||+||+|++..+
T Consensus 108 a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~-~~f~v~~~~~~~~~a~~vILAtGG~S 166 (409)
T PF03486_consen 108 ASSVVDALLEELKRLGVEIHFNTRVKSIEKKED-GVFGVKTKNGGEYEADAVILATGGKS 166 (409)
T ss_dssp HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETT-EEEEEEETTTEEEEESEEEE----SS
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCC-ceeEeeccCcccccCCEEEEecCCCC
Confidence 457788899999999999999999999998544 45578886677999999999997543
No 43
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.66 E-value=4.3e-15 Score=135.08 Aligned_cols=66 Identities=18% Similarity=0.311 Sum_probs=56.8
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEe-cCCCCEEEEEEcCCcEEecCEEEEccChHHHhhhCCc
Q 009635 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIEL-NDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPE 337 (530)
Q Consensus 271 ~~~l~~~l~~~l~~~g~~i~~~t~V~~I~~-~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~~~~ll~~ 337 (530)
.++-+.++...+++.|+.|+.+..|+.+.. ++++..+.|+|.+|..+.|+++|+|+++|+ .++|+.
T Consensus 152 a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi-~klL~~ 218 (399)
T KOG2820|consen 152 AAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWI-NKLLPT 218 (399)
T ss_pred HHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHH-HhhcCc
Confidence 567888999999999999999999999984 244556789999998899999999999998 777765
No 44
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.65 E-value=1.4e-14 Score=146.13 Aligned_cols=58 Identities=17% Similarity=0.245 Sum_probs=46.1
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCC-----cEEecCEEEEccChHH
Q 009635 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-----NVIDGDAYVFATPVDI 330 (530)
Q Consensus 271 ~~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G-----~~i~ad~VI~a~~~~~ 330 (530)
+.+++..|.+.++++|++|+.+++|++|..++ +.+ .+.+.++ .+++||+||+|+++|+
T Consensus 196 ~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~-~~~-~v~~~~~~~~~~~~i~a~~vV~a~G~~s 258 (410)
T PRK12409 196 IHKFTTGLAAACARLGVQFRYGQEVTSIKTDG-GGV-VLTVQPSAEHPSRTLEFDGVVVCAGVGS 258 (410)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC-CEE-EEEEEcCCCCccceEecCEEEECCCcCh
Confidence 56788899999999999999999999998743 333 3443322 3699999999999986
No 45
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.64 E-value=1.3e-14 Score=144.90 Aligned_cols=62 Identities=21% Similarity=0.259 Sum_probs=51.5
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHHHhhhCC
Q 009635 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLP 336 (530)
Q Consensus 271 ~~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~~~~ll~ 336 (530)
+.+++..+.+.+.++|++|+++++|++|..+ ++. +.|++.+| ++.||+||+|++.++ ..+++
T Consensus 148 p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~-~~~-~~v~~~~g-~~~a~~vV~A~G~~~-~~l~~ 209 (376)
T PRK11259 148 PELAIKAHLRLAREAGAELLFNEPVTAIEAD-GDG-VTVTTADG-TYEAKKLVVSAGAWV-KDLLP 209 (376)
T ss_pred HHHHHHHHHHHHHHCCCEEECCCEEEEEEee-CCe-EEEEeCCC-EEEeeEEEEecCcch-hhhcc
Confidence 6788888888888899999999999999874 333 35888888 799999999999987 44544
No 46
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.59 E-value=9.4e-13 Score=136.54 Aligned_cols=59 Identities=19% Similarity=0.127 Sum_probs=49.7
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEc---CC--cEEecCEEEEccChHH
Q 009635 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NG--NVIDGDAYVFATPVDI 330 (530)
Q Consensus 271 ~~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~---~G--~~i~ad~VI~a~~~~~ 330 (530)
+.+++.+++..+.++|++|+++++|++|..+ ++++++|++. .| .+|+|++||+|+++|+
T Consensus 148 p~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~-~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa 211 (546)
T PRK11101 148 PFRLTAANMLDAKEHGAQILTYHEVTGLIRE-GDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWG 211 (546)
T ss_pred HHHHHHHHHHHHHhCCCEEEeccEEEEEEEc-CCeEEEEEEEEcCCCcEEEEECCEEEECCChhH
Confidence 6889999999999999999999999999874 5666677653 23 3799999999999997
No 47
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.57 E-value=1.4e-12 Score=130.97 Aligned_cols=57 Identities=21% Similarity=0.247 Sum_probs=49.7
Q ss_pred CccchHHHHHHHHHcC-cEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHH
Q 009635 271 PERLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (530)
Q Consensus 271 ~~~l~~~l~~~l~~~g-~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (530)
|..++.++++.+.++| ..+..+++|+.+..+ + ..+.|.|.+|+ |.||+||+|++.|+
T Consensus 155 p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~-~-~~~~v~t~~g~-i~a~~vv~a~G~~~ 212 (387)
T COG0665 155 PRLLTRALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVETDGGT-IEADKVVLAAGAWA 212 (387)
T ss_pred HHHHHHHHHHHHHhcCCeEEEccceEEEEEec-C-cEEEEEeCCcc-EEeCEEEEcCchHH
Confidence 6789999999999999 567779999999874 3 56689999995 99999999999997
No 48
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=99.56 E-value=5e-15 Score=106.61 Aligned_cols=66 Identities=42% Similarity=0.766 Sum_probs=57.8
Q ss_pred EECCChHHHHHHHHHHHCCCcEEEEecCcccCceeeeeecCCCCEEeeeeceecC--CcchHHHHHHHc
Q 009635 62 IAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFG--AYPNIQNLFGEL 128 (530)
Q Consensus 62 IIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~--~~~~~~~l~~~l 128 (530)
|||||++||++|+.|+++|++|+|+|+++++||++.+... +|+.+|.|++++.. .++.+.+++++|
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~-~g~~~d~g~~~~~~~~~~~~~~~l~~~L 68 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRI-PGYRFDLGAHYFFPPDDYPNLFRLLREL 68 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEE-TTEEEETSS-SEEETTSCHHHHHHHHTT
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEE-CCEEEeeccEEEeCCCCchHHHHHHcCC
Confidence 8999999999999999999999999999999999998764 77999999999876 457788888775
No 49
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.54 E-value=5.9e-14 Score=136.70 Aligned_cols=95 Identities=25% Similarity=0.282 Sum_probs=67.7
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcE-EecCEEEEccChHHHhh--hCCccccccHHHHH
Q 009635 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNV-IDGDAYVFATPVDILKL--QLPENWKEMAYFKR 347 (530)
Q Consensus 271 ~~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~-i~ad~VI~a~~~~~~~~--ll~~~~~~~~~~~~ 347 (530)
+..+..+|++.+.++|++|++|++|+.|+..++| +..+.+.+|++ ++|+.||.|.|.++..- +.....
T Consensus 152 ~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg-~~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~~~g~~~-------- 222 (429)
T COG0579 152 PGELTRALAEEAQANGVELRLNTEVTGIEKQSDG-VFVLNTSNGEETLEAKFVINAAGLYADPLAQMAGIPE-------- 222 (429)
T ss_pred HHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCc-eEEEEecCCcEEEEeeEEEECCchhHHHHHHHhCCCc--------
Confidence 6788999999999999999999999999987775 34577888866 99999999999876322 222211
Q ss_pred HhccCCccEEEEEEEeccccccccCcccc
Q 009635 348 LEKLVGVPVINIHIWFDRKLKNTYDHLLF 376 (530)
Q Consensus 348 l~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 376 (530)
.....+....++.++..........+|
T Consensus 223 --~~~~~P~~G~y~~~~~~~~~~~~~~Iy 249 (429)
T COG0579 223 --DFKIFPVRGEYLVLDNEVKALLRHKIY 249 (429)
T ss_pred --ccccCccceEEEEEcccccccccceee
Confidence 023344545677777654444444554
No 50
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.52 E-value=5.7e-13 Score=141.94 Aligned_cols=61 Identities=16% Similarity=0.258 Sum_probs=50.7
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHHHhhhC
Q 009635 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQL 335 (530)
Q Consensus 271 ~~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~~~~ll 335 (530)
+..++.+|.+.+.+ |++|+.+++|++|..++ +.+ .|.+.+|..+.||+||+|++.++ ..++
T Consensus 407 p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~-~~~-~v~t~~g~~~~ad~VV~A~G~~s-~~l~ 467 (662)
T PRK01747 407 PAELCRALLALAGQ-QLTIHFGHEVARLERED-DGW-QLDFAGGTLASAPVVVLANGHDA-ARFA 467 (662)
T ss_pred HHHHHHHHHHhccc-CcEEEeCCEeeEEEEeC-CEE-EEEECCCcEEECCEEEECCCCCc-cccc
Confidence 67899999999988 99999999999998744 433 48888887678999999999987 3443
No 51
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.51 E-value=1.2e-12 Score=131.98 Aligned_cols=56 Identities=21% Similarity=0.370 Sum_probs=43.3
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHH
Q 009635 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (530)
Q Consensus 273 ~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (530)
.|-+.|.+.+++.|++|+.+++|++|..+ ++.++.+. .+|++++|+.||.|++.+.
T Consensus 109 ~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~-~g~v~~v~-~~g~~i~A~~VI~A~G~~s 164 (428)
T PRK10157 109 KFDAWLMEQAEEAGAQLITGIRVDNLVQR-DGKVVGVE-ADGDVIEAKTVILADGVNS 164 (428)
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEEe-CCEEEEEE-cCCcEEECCEEEEEeCCCH
Confidence 34455777788889999999999999874 45554554 4566899999999998754
No 52
>PRK10015 oxidoreductase; Provisional
Probab=99.50 E-value=1e-11 Score=125.06 Aligned_cols=56 Identities=16% Similarity=0.252 Sum_probs=43.0
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHH
Q 009635 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (530)
Q Consensus 273 ~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (530)
.|-..|.+.+++.|++++.+++|++|..+ ++.+..+.+. +++++||.||.|.+...
T Consensus 109 ~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~-~~~v~~v~~~-~~~i~A~~VI~AdG~~s 164 (429)
T PRK10015 109 RLDPWLMEQAEQAGAQFIPGVRVDALVRE-GNKVTGVQAG-DDILEANVVILADGVNS 164 (429)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEe-CCEEEEEEeC-CeEEECCEEEEccCcch
Confidence 34455777888889999999999999874 4555556554 44799999999998753
No 53
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.50 E-value=2.3e-14 Score=142.44 Aligned_cols=59 Identities=19% Similarity=0.302 Sum_probs=48.8
Q ss_pred CccchHHHHHHHHHc-CcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHHHhhhCCc
Q 009635 271 PERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPE 337 (530)
Q Consensus 271 ~~~l~~~l~~~l~~~-g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~~~~ll~~ 337 (530)
+..++..|.+.+.++ |++|+.+++|++|+. + .|+|.+| +++||+||+|+++++ ..|++.
T Consensus 144 p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~--~----~v~t~~g-~i~a~~VV~A~G~~s-~~l~~~ 203 (365)
T TIGR03364 144 PREAIPALAAYLAEQHGVEFHWNTAVTSVET--G----TVRTSRG-DVHADQVFVCPGADF-ETLFPE 203 (365)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCCeEEEEec--C----eEEeCCC-cEEeCEEEECCCCCh-hhhCcc
Confidence 678889999988775 999999999999964 2 4788888 589999999999987 455543
No 54
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.49 E-value=7.4e-12 Score=124.64 Aligned_cols=103 Identities=18% Similarity=0.149 Sum_probs=69.7
Q ss_pred EEeecCC-CCccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCc-----EEecCEEEEccChHHHhhhCC
Q 009635 263 MAFLDGN-PPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGN-----VIDGDAYVFATPVDILKLQLP 336 (530)
Q Consensus 263 ~~~~~gg-~~~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~-----~i~ad~VI~a~~~~~~~~ll~ 336 (530)
+.|.++- .+.+|+..++..+.++|.++.+.++|+++..+ ++ +++|.+.|.+ +|+|+.||.|+++|. .+++.
T Consensus 154 ~~y~D~~vddaRLv~~~a~~A~~~Ga~il~~~~v~~~~re-~~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~-d~i~~ 230 (532)
T COG0578 154 FRYPDGVVDDARLVAANARDAAEHGAEILTYTRVESLRRE-GG-VWGVEVEDRETGETYEIRARAVVNAAGPWV-DEILE 230 (532)
T ss_pred EEEccceechHHHHHHHHHHHHhcccchhhcceeeeeeec-CC-EEEEEEEecCCCcEEEEEcCEEEECCCccH-HHHHH
Confidence 4444442 25789999999999999999999999999984 55 7788876542 599999999999998 44433
Q ss_pred ccccccHHHHHHhccCCccEEEEEEEeccccccccCcc
Q 009635 337 ENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTYDHL 374 (530)
Q Consensus 337 ~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~ 374 (530)
....... ......+..-+++.+++ +++....+
T Consensus 231 ~~~~~~~-----~~~~vr~skGsHlVv~~-~~~~~~a~ 262 (532)
T COG0578 231 MAGLEQS-----PHIGVRPSKGSHLVVDK-KFPINQAV 262 (532)
T ss_pred hhcccCC-----CCccceeccceEEEecc-cCCCCceE
Confidence 2211000 00123355567888888 54433333
No 55
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=99.49 E-value=3.2e-11 Score=117.62 Aligned_cols=250 Identities=20% Similarity=0.239 Sum_probs=130.1
Q ss_pred CCeEEEECCChHHHHHHHHHHHC----CCcEEEEecCcccCceeeeeec-CCCCEEeeeeceecCCcchHHHHHHHcCCC
Q 009635 57 PLKVVIAGAGLAGLSTAKYLADA----GHKPLLLEARDVLGGKIAAWKD-GDGDWYETGLHIFFGAYPNIQNLFGELGIN 131 (530)
Q Consensus 57 ~~dVvIIGaG~aGl~aA~~L~~~----G~~V~vlEa~~~~GG~~~~~~~-~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~ 131 (530)
..++=|||||+|+|+||.+|.+. |.+|+|||+.+..||.+....+ ..|+.+- |+..+...+..+.+|++.+.-.
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g~~~~GYv~R-gGR~~~~~~eclwdLls~IPSl 80 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAGDPENGYVIR-GGRMMEFHYECLWDLLSSIPSL 80 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCCCCCCCeeec-CCccccchhHHHHHHHHhCCCC
Confidence 45788999999999999999986 5699999999999999876543 2455544 4444445566688888776532
Q ss_pred CCcceeccceeeecCCCC--CCcccccCCCCCCCchhhHHHHHhcccCC--ChHHHHHhhhhhhhhhhcCcccccccCcc
Q 009635 132 DRLQWKEHSMIFAMPNKP--GEFSRFDFPEVLPAPLNGILAILRNNEML--TWPEKVKFAIGLLPAIIGGQAYVEAQDGL 207 (530)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (530)
+.....-.+.++...... ..-+++-...+. . ......+ ..........-++. . -..+.+.
T Consensus 81 e~p~~SVlDe~~~~n~~~p~~s~~Rli~~~G~-----~----~~~~~~~~Ls~k~r~eL~kL~l~----~---E~~L~~~ 144 (500)
T PF06100_consen 81 EDPGKSVLDEIYWFNKEDPNYSKARLIDKRGQ-----I----VDTDSKFGLSEKDRMELIKLLLT----P---EEDLGDK 144 (500)
T ss_pred CCCCCcHHHHHHHhccCCCCCcceeeeccCCc-----c----ccccCcCCCCHHHHHHHHHHhcC----C---HHHhCcc
Confidence 221111011111000000 000000000000 0 0000001 11111111110000 0 0123456
Q ss_pred cHHHHHHHcCCCHHHHHHHHHHHHhhcccCCCCcccHHHHHHHHHHHHhhccC----CeEEeecCCCCccchHHHHHHHH
Q 009635 208 TVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHG----SKMAFLDGNPPERLCLPIVEHIQ 283 (530)
Q Consensus 208 s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~~~~~gg~~~~l~~~l~~~l~ 283 (530)
++.+|+...-+...+ -.+...+++..+.. |+......+.+++....+ ..+.+.+-+..+.++..|.+.|+
T Consensus 145 ~I~d~F~~~FF~SnF-----W~~W~T~FAFqpWh-Sa~E~rRyl~Rf~h~~~~l~~l~~l~~T~YNQyeSii~Pl~~~L~ 218 (500)
T PF06100_consen 145 RIEDWFSESFFESNF-----WYMWSTMFAFQPWH-SAVEFRRYLHRFIHEIPGLNDLSGLDRTKYNQYESIILPLIRYLK 218 (500)
T ss_pred cHHHhcchhhhcCch-----hHhHHHhhccCcch-hHHHHHHHHHHHHHhcCCCCCccccccCccccHHHHHHHHHHHHH
Confidence 677777653222222 22333344444443 445555556666554333 12222333347899999999999
Q ss_pred HcCcEEEecceeeEEEecCC---CCEEEEEE-cCCc--EE--e-cCEEEEccChH
Q 009635 284 SLGGEVRLNSRVQKIELNDD---GTVKNFLL-TNGN--VI--D-GDAYVFATPVD 329 (530)
Q Consensus 284 ~~g~~i~~~t~V~~I~~~~~---g~~~~v~~-~~G~--~i--~-ad~VI~a~~~~ 329 (530)
++||++++|+.|+.|..+.+ ..+..+++ .+|+ +| . -|.|+++.|.-
T Consensus 219 ~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~~~i~l~~~DlV~vT~GS~ 273 (500)
T PF06100_consen 219 SQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQDGKEETIDLGPDDLVFVTNGSM 273 (500)
T ss_pred HCCCEEECCCEEEEEEEEccCCCeeEEEEEEEcCCCeeEEEeCCCCEEEEECCcc
Confidence 99999999999999987422 22334443 3443 23 2 45666665543
No 56
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.48 E-value=5.1e-11 Score=119.22 Aligned_cols=63 Identities=21% Similarity=0.261 Sum_probs=47.9
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChH-HHhhhC
Q 009635 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQL 335 (530)
Q Consensus 272 ~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~-~~~~ll 335 (530)
..+.+.|++.+++.|++++.++.|+.+..++++.+.++ ..++.+++|+.||.|.+.. .+.+.+
T Consensus 95 ~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~a~~vI~AdG~~s~l~~~l 158 (396)
T COG0644 95 AKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGV-RAGDDEVRAKVVIDADGVNSALARKL 158 (396)
T ss_pred HHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEE-EcCCEEEEcCEEEECCCcchHHHHHh
Confidence 35566788899999999999999999998766655433 3444689999999999864 344443
No 57
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.47 E-value=2.3e-11 Score=127.60 Aligned_cols=60 Identities=15% Similarity=0.102 Sum_probs=50.1
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecC-CCCEEEEEE---cCCc--EEecCEEEEccChHH
Q 009635 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELND-DGTVKNFLL---TNGN--VIDGDAYVFATPVDI 330 (530)
Q Consensus 271 ~~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~-~g~~~~v~~---~~G~--~i~ad~VI~a~~~~~ 330 (530)
+.+++..|++.+.++|++|+.+++|++|..++ ++.+++|++ .+|+ +|.||.||+|+|+|+
T Consensus 231 p~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws 296 (627)
T PLN02464 231 DSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFC 296 (627)
T ss_pred HHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhH
Confidence 78999999999999999999999999998754 466666664 2343 589999999999996
No 58
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.46 E-value=2.2e-13 Score=137.81 Aligned_cols=59 Identities=22% Similarity=0.247 Sum_probs=50.7
Q ss_pred CccchHHHHHHHHH----cC--cEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHHH
Q 009635 271 PERLCLPIVEHIQS----LG--GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDIL 331 (530)
Q Consensus 271 ~~~l~~~l~~~l~~----~g--~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~~ 331 (530)
+..++.+|.+.+++ +| ++|+++++|++|..+ ++..+.|+|.+| +++||+||+|++.|+.
T Consensus 210 ~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~-~~~~~~V~T~~G-~i~A~~VVvaAG~~S~ 274 (497)
T PTZ00383 210 YQKLSESFVKHARRDALVPGKKISINLNTEVLNIERS-NDSLYKIHTNRG-EIRARFVVVSACGYSL 274 (497)
T ss_pred HHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEec-CCCeEEEEECCC-EEEeCEEEECcChhHH
Confidence 67899999999998 77 789999999999974 344557889888 7999999999999873
No 59
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.46 E-value=3.4e-11 Score=123.98 Aligned_cols=58 Identities=21% Similarity=0.234 Sum_probs=47.2
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcC---Cc--EEecCEEEEccChHH
Q 009635 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN---GN--VIDGDAYVFATPVDI 330 (530)
Q Consensus 271 ~~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~---G~--~i~ad~VI~a~~~~~ 330 (530)
+.+++..+++.+.++|++++.+++|++|..+ ++. ++|++.+ |+ +|+|+.||+|+|+|+
T Consensus 154 ~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~-~~~-~~v~~~~~~~g~~~~i~a~~VVnAaG~wa 216 (508)
T PRK12266 154 DARLVVLNARDAAERGAEILTRTRVVSARRE-NGL-WHVTLEDTATGKRYTVRARALVNAAGPWV 216 (508)
T ss_pred HHHHHHHHHHHHHHcCCEEEcCcEEEEEEEe-CCE-EEEEEEEcCCCCEEEEEcCEEEECCCccH
Confidence 5788888999999999999999999999874 333 3565543 43 699999999999987
No 60
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.44 E-value=2.8e-11 Score=124.73 Aligned_cols=58 Identities=14% Similarity=0.098 Sum_probs=47.7
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCC----cEEecCEEEEccChHH
Q 009635 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG----NVIDGDAYVFATPVDI 330 (530)
Q Consensus 271 ~~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G----~~i~ad~VI~a~~~~~ 330 (530)
+.+++..++..+.++|++|+.+++|++|..+ ++ .+.|++.++ .+|+|+.||+|+|+|+
T Consensus 154 ~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~-~~-~~~v~~~~~~g~~~~i~a~~VVnAaG~wa 215 (502)
T PRK13369 154 DARLVVLNALDAAERGATILTRTRCVSARRE-GG-LWRVETRDADGETRTVRARALVNAAGPWV 215 (502)
T ss_pred HHHHHHHHHHHHHHCCCEEecCcEEEEEEEc-CC-EEEEEEEeCCCCEEEEEecEEEECCCccH
Confidence 5788888999999999999999999999874 33 345666554 2599999999999987
No 61
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.44 E-value=2.2e-13 Score=136.55 Aligned_cols=57 Identities=21% Similarity=0.281 Sum_probs=48.9
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHH
Q 009635 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (530)
Q Consensus 271 ~~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (530)
+..+++.|.+.++++|++|+++++|++|..++ +.+ .|++.+| ++.||+||+|++.++
T Consensus 148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~-~~~-~V~~~~g-~i~ad~vV~A~G~~s 204 (393)
T PRK11728 148 YRAVAEAMAELIQARGGEIRLGAEVTALDEHA-NGV-VVRTTQG-EYEARTLINCAGLMS 204 (393)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEecC-CeE-EEEECCC-EEEeCEEEECCCcch
Confidence 57889999999999999999999999998743 333 5788877 799999999999876
No 62
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.42 E-value=4e-11 Score=120.30 Aligned_cols=57 Identities=18% Similarity=0.248 Sum_probs=46.6
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHH
Q 009635 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (530)
Q Consensus 272 ~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (530)
..+.+.|.+.+++.|++++.+++|++|..++++ + .|++.+|+++.||.||.|.+.++
T Consensus 113 ~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~-v-~v~~~~g~~~~a~~vV~AdG~~S 169 (392)
T PRK08773 113 DLLVDRLWAALHAAGVQLHCPARVVALEQDADR-V-RLRLDDGRRLEAALAIAADGAAS 169 (392)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCe-E-EEEECCCCEEEeCEEEEecCCCc
Confidence 456677888888889999999999999874443 3 47788888899999999998754
No 63
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=99.40 E-value=4.8e-11 Score=117.48 Aligned_cols=255 Identities=18% Similarity=0.268 Sum_probs=149.9
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceeeeee--------------------cCCCCEEeeeecee
Q 009635 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWK--------------------DGDGDWYETGLHIF 114 (530)
Q Consensus 55 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~~~--------------------~~~g~~~d~G~~~~ 114 (530)
++++||||+|.|+.-.-.|..|++.|++|+.+|+++.-||...+.. ....+.+|+-+.++
T Consensus 2 ~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~~~~~~~~sR~ynIDL~PKll 81 (438)
T PF00996_consen 2 DEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWTPPESLGRSRDYNIDLIPKLL 81 (438)
T ss_dssp -SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCHHHHHHHTGGGC-EESS--BE
T ss_pred CccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcccHHHHHHHhhccccccccccccccceeEecchHhh
Confidence 5789999999999999999999999999999999999999988754 01246677777766
Q ss_pred cCCcchHHHHHHHcCCCCCcceeccceeeecCCCCCCcccccCCCCCCCchhhHHHHHhcccCCChHHHHHhhhhhhhhh
Q 009635 115 FGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAI 194 (530)
Q Consensus 115 ~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (530)
... ..+.+++-+-++...+++......+.+. .+.+.. .|.. -.+++.. ..+.+.++.+. +.++...
T Consensus 82 ~a~-g~LV~lLi~S~V~rYLEFk~V~~~~v~~--~~~l~k------VP~s---r~dvf~s-~~lsl~eKR~l-mkFl~~v 147 (438)
T PF00996_consen 82 YAR-GPLVKLLISSGVTRYLEFKAVDGSYVYK--NGKLHK------VPCS---REDVFKS-KLLSLFEKRRL-MKFLKFV 147 (438)
T ss_dssp ETT-SHHHHHHHHCTGGGGSEEEEESEEEEEE--TTEEEE--------SS---HHHHHC--TTS-HHHHHHH-HHHHHHH
T ss_pred hcc-CHHHHHHHhCCcccceEEEEcceeEEEe--CCEEee------CCCC---HHHhhcC-CCccHHHHHHH-HHHHHHH
Confidence 533 3466777777877766666655444332 222221 1221 1122222 33444444222 2222222
Q ss_pred hcCc---c-cc--cccCcccHHHHHHHcCCCHHHHHHHHHHHHhhcccCCCC--cccHHHHHHHHHHHHhh--ccC-CeE
Q 009635 195 IGGQ---A-YV--EAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPD--ELSMQCILIALNRFLQE--KHG-SKM 263 (530)
Q Consensus 195 ~~~~---~-~~--~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~g-~~~ 263 (530)
..+. . .. ......++.++++..++++.+.+.+...+.... +.. +.+....+..+..++.. .+| +.+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~e~~~~f~L~~~~~~~i~haiaL~~---~~~~~~~p~~~~l~ri~~yl~SlgryG~sPf 224 (438)
T PF00996_consen 148 ANYEEDDPSTHKGLDPEKKTFQELLKKFGLSENLIDFIGHAIALSL---DDSYLTEPAREGLERIKLYLSSLGRYGKSPF 224 (438)
T ss_dssp HHGCTTBGGGSTTG-TTTSBHHHHHHHTTS-HHHHHHHHHHTS-SS---SSGGGGSBSHHHHHHHHHHHHHHCCCSSSSE
T ss_pred hhcccCCcchhhccccccccHHHHHHhcCCCHHHHHHHHHhhhhcc---CcccccccHHHHHHHHHHHHHHHhccCCCCE
Confidence 2111 1 11 123457899999999988876554443332111 111 12334555666665542 333 356
Q ss_pred EeecCCCCccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChH
Q 009635 264 AFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (530)
Q Consensus 264 ~~~~gg~~~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~ 329 (530)
.|+..| ...|.+++.+...-.|+.+.+|++|.+|..++++++.+|.+ +|++++|++||. .|.+
T Consensus 225 LyP~YG-~GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s-~ge~v~~k~vI~-dpsy 287 (438)
T PF00996_consen 225 LYPLYG-LGELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKS-EGEVVKAKKVIG-DPSY 287 (438)
T ss_dssp EEETT--TTHHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEE-TTEEEEESEEEE-EGGG
T ss_pred EEEccC-CccHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEec-CCEEEEcCEEEE-CCcc
Confidence 666666 67999999999999999999999999999877788888875 888999999995 3444
No 64
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.38 E-value=6.4e-12 Score=107.86 Aligned_cols=42 Identities=43% Similarity=0.602 Sum_probs=38.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceee
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~ 97 (530)
.+.||+|||||+|||+|||+|+++|.+|+|+|++-.+||-+.
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w 70 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIW 70 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCccc
Confidence 456999999999999999999999999999999999888654
No 65
>PRK07045 putative monooxygenase; Reviewed
Probab=99.38 E-value=1.6e-10 Score=115.83 Aligned_cols=61 Identities=20% Similarity=0.323 Sum_probs=47.4
Q ss_pred cchHHHHHHHHH-cCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHH-Hhh
Q 009635 273 RLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI-LKL 333 (530)
Q Consensus 273 ~l~~~l~~~l~~-~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~-~~~ 333 (530)
.|.+.|.+.+.+ .|++++++++|++|+.++++.++.|++.+|+++.+|.||-|.|..+ +++
T Consensus 107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S~vR~ 169 (388)
T PRK07045 107 QLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARSMIRD 169 (388)
T ss_pred HHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCChHHHH
Confidence 344556666654 4799999999999998666665678888998999999999998753 455
No 66
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=99.38 E-value=1.8e-12 Score=127.90 Aligned_cols=89 Identities=20% Similarity=0.274 Sum_probs=65.4
Q ss_pred CCCCcccHHHHHHHHHHHHhhccCCeEEeecCCCCccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcE
Q 009635 237 INPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNV 316 (530)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~gg~~~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~ 316 (530)
++++++...+.+..++.+....+.+.....+ |..++++|+..+.+.|+.|..|++|++|....++ ..+|.|+.| .
T Consensus 155 LsPee~~~~~pLLn~d~v~g~Ly~P~DG~~D---P~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~-~~gVeT~~G-~ 229 (856)
T KOG2844|consen 155 LSPEETQELFPLLNVDDVYGGLYSPGDGVMD---PAGLCQALARAASALGALVIENCPVTGLHVETDK-FGGVETPHG-S 229 (856)
T ss_pred cCHHHHHHhCcccchhHheeeeecCCCcccC---HHHHHHHHHHHHHhcCcEEEecCCcceEEeecCC-ccceeccCc-c
Confidence 3445444444444444433333333333333 8899999999999999999999999999875444 459999999 6
Q ss_pred EecCEEEEccChHH
Q 009635 317 IDGDAYVFATPVDI 330 (530)
Q Consensus 317 i~ad~VI~a~~~~~ 330 (530)
|++.+||.|++.|.
T Consensus 230 iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 230 IETECVVNAAGVWA 243 (856)
T ss_pred eecceEEechhHHH
Confidence 99999999999997
No 67
>PLN02463 lycopene beta cyclase
Probab=99.36 E-value=5.3e-10 Score=112.31 Aligned_cols=56 Identities=16% Similarity=0.189 Sum_probs=44.1
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHH
Q 009635 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (530)
Q Consensus 272 ~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (530)
..|.+.|.+.+.+.|++++ +++|++|+.++++ +.|++.+|++++||.||.|+|...
T Consensus 114 ~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~--~~V~~~dG~~i~A~lVI~AdG~~s 169 (447)
T PLN02463 114 KKLKSKMLERCIANGVQFH-QAKVKKVVHEESK--SLVVCDDGVKIQASLVLDATGFSR 169 (447)
T ss_pred HHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCe--EEEEECCCCEEEcCEEEECcCCCc
Confidence 3455667777778899986 6789999875433 468889998999999999999764
No 68
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.36 E-value=2.4e-10 Score=115.83 Aligned_cols=38 Identities=37% Similarity=0.522 Sum_probs=35.0
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCccc
Q 009635 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (530)
Q Consensus 55 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~ 92 (530)
+.++||+|||||++|+++|..|++.|++|+|+|+++..
T Consensus 16 ~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 53 (415)
T PRK07364 16 SLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE 53 (415)
T ss_pred ccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence 45789999999999999999999999999999998754
No 69
>PRK07121 hypothetical protein; Validated
Probab=99.36 E-value=3.8e-11 Score=123.72 Aligned_cols=60 Identities=23% Similarity=0.359 Sum_probs=49.0
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcC-Cc--EEec-CEEEEccChHH
Q 009635 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN-GN--VIDG-DAYVFATPVDI 330 (530)
Q Consensus 271 ~~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~-G~--~i~a-d~VI~a~~~~~ 330 (530)
...++..|.+.+++.|++|+++++|++|..++++++++|+..+ |+ +|+| +.||+||+.+.
T Consensus 176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~ 239 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFA 239 (492)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcC
Confidence 3568889999999999999999999999876567888887643 32 5889 99999998654
No 70
>PRK06184 hypothetical protein; Provisional
Probab=99.36 E-value=1.4e-10 Score=120.09 Aligned_cols=61 Identities=16% Similarity=0.157 Sum_probs=45.6
Q ss_pred chHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEE---cCCcEEecCEEEEccChHH-HhhhCC
Q 009635 274 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGNVIDGDAYVFATPVDI-LKLQLP 336 (530)
Q Consensus 274 l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~---~~G~~i~ad~VI~a~~~~~-~~~ll~ 336 (530)
+-+.|.+.+.+.|++|+++++|++|+.++++. .+++ .++++++||.||.|.+.++ +++.+.
T Consensus 111 le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v--~v~~~~~~~~~~i~a~~vVgADG~~S~vR~~lg 175 (502)
T PRK06184 111 TERILRERLAELGHRVEFGCELVGFEQDADGV--TARVAGPAGEETVRARYLVGADGGRSFVRKALG 175 (502)
T ss_pred HHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcE--EEEEEeCCCeEEEEeCEEEECCCCchHHHHhCC
Confidence 44567777888899999999999998755553 3444 4566899999999998864 445554
No 71
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.35 E-value=1.8e-10 Score=115.48 Aligned_cols=57 Identities=19% Similarity=0.201 Sum_probs=46.4
Q ss_pred ccchHHHHHHHHHcC-cEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHH
Q 009635 272 ERLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (530)
Q Consensus 272 ~~l~~~l~~~l~~~g-~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (530)
..+.+.|.+.+.+.| ++|+.+++|++|+.+++ .+ .|++.+|+++++|.||.|.+.++
T Consensus 106 ~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~-~~-~v~~~~g~~~~~~~vi~adG~~S 163 (385)
T TIGR01988 106 RVLQQALWERLQEYPNVTLLCPARVVELPRHSD-HV-ELTLDDGQQLRARLLVGADGANS 163 (385)
T ss_pred HHHHHHHHHHHHhCCCcEEecCCeEEEEEecCC-ee-EEEECCCCEEEeeEEEEeCCCCC
Confidence 456777888888887 99999999999987443 33 57788898899999999988753
No 72
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.35 E-value=3.4e-10 Score=114.19 Aligned_cols=63 Identities=13% Similarity=0.129 Sum_probs=48.8
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChH-HHhhhCCc
Q 009635 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQLPE 337 (530)
Q Consensus 273 ~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~-~~~~ll~~ 337 (530)
.+.+.|.+.+.+.|++|+.+++|++|+.++++ +.|++.+|++++||.||.|.+.+ .+++++..
T Consensus 113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--v~v~~~~g~~~~a~~vVgAdG~~S~vR~~lg~ 176 (405)
T PRK05714 113 VVQDALLERLHDSDIGLLANARLEQMRRSGDD--WLLTLADGRQLRAPLVVAADGANSAVRRLAGC 176 (405)
T ss_pred HHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCe--EEEEECCCCEEEeCEEEEecCCCchhHHhcCC
Confidence 45567777777789999999999999875444 35778888889999999999875 44555543
No 73
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.34 E-value=1.2e-11 Score=115.12 Aligned_cols=59 Identities=19% Similarity=0.163 Sum_probs=46.7
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcC-----------CcEEecCEEEEccChHH
Q 009635 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN-----------GNVIDGDAYVFATPVDI 330 (530)
Q Consensus 272 ~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~-----------G~~i~ad~VI~a~~~~~ 330 (530)
..+...|.+.+.+.|++|++++.|.+|..++++++.+|.+.. ..+++|+.||.|++.+.
T Consensus 104 ~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a 173 (257)
T PRK04176 104 VEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDA 173 (257)
T ss_pred HHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCc
Confidence 466777888888899999999999999875555676766531 24799999999998754
No 74
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.33 E-value=5.2e-10 Score=112.01 Aligned_cols=64 Identities=16% Similarity=0.157 Sum_probs=49.8
Q ss_pred CccchHHHHHHHHH-cCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHH-HhhhCC
Q 009635 271 PERLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI-LKLQLP 336 (530)
Q Consensus 271 ~~~l~~~l~~~l~~-~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~-~~~ll~ 336 (530)
...+.+.|.+.+.+ .|++++.+++|++|..++++ +.|++.+|+++.||.||.|.|.+. +++.+.
T Consensus 104 r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~--~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~ 169 (382)
T TIGR01984 104 LADLGQALLSRLALLTNIQLYCPARYKEIIRNQDY--VRVTLDNGQQLRAKLLIAADGANSKVRELLS 169 (382)
T ss_pred cHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCe--EEEEECCCCEEEeeEEEEecCCChHHHHHcC
Confidence 35677788888887 48999999999999875444 357778888899999999999764 444443
No 75
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=99.32 E-value=7.9e-12 Score=113.46 Aligned_cols=241 Identities=22% Similarity=0.273 Sum_probs=133.3
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceeeeeecC-CCC-EEeeeeceecCCcchHHHHHHHcCCCCCc
Q 009635 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDG-DGD-WYETGLHIFFGAYPNIQNLFGELGINDRL 134 (530)
Q Consensus 57 ~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~~~~~-~g~-~~d~G~~~~~~~~~~~~~l~~~lg~~~~~ 134 (530)
++|++|||||++|+.+|..|++.|++|+|+|+++.+||.+.+..+. .|. +.-.|+|+++.....+++.+..+---...
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~tGIlvHkYGpHIFHT~~~~Vwdyv~~F~e~~~Y 80 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVHKYGPHIFHTDNKRVWDYVNQFTEFNPY 80 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCCCCeEEeeccCceeecCchHHHHHHhhhhhhhhh
Confidence 4799999999999999999999999999999999999999986643 454 45789999998888888888776322111
Q ss_pred ceeccceeeecCCCCCCcccccCCCCCCCchhhHHHHHhcccCCChHHHHHhhhhhhhhhhcCcccccccCcccHHHHHH
Q 009635 135 QWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMR 214 (530)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~ 214 (530)
. ... +.+ .++..- .+|-.+..+..++... ..++.++.......+ .....+.+.+++-..
T Consensus 81 ~---hrV-la~--~ng~~~------~lP~nl~ti~ql~G~~---~~p~~a~~~i~~~~~------~~~~~~~q~~ee~ai 139 (374)
T COG0562 81 Q---HRV-LAL--VNGQLY------PLPFNLNTINQLFGKN---FTPDEARKFIEEQAA------EIDIAEPQNLEEQAI 139 (374)
T ss_pred c---cce-eEE--ECCeee------eccccHHHHHHHhCcc---CCHHHHHHHHHHhhc------cccccchhhhhhHHH
Confidence 1 111 110 011110 1344444555544321 111121111111110 000111123333222
Q ss_pred HcCCCHHHHHHHHHHHHhhcccCCCCcccHHHHHHHHHHH-HhhccCCeEEeecCCCCccchHHHHHHHHH-cCcEEEec
Q 009635 215 KQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRF-LQEKHGSKMAFLDGNPPERLCLPIVEHIQS-LGGEVRLN 292 (530)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~gg~~~~l~~~l~~~l~~-~g~~i~~~ 292 (530)
+. +...+...++..+....|+.+++++++......=..+ .+..+-+. ..+|- |..=-+++.+.+.+ .++++++|
T Consensus 140 s~-vg~~LY~~f~kgYT~KQWG~~p~eLpasvi~RvPVr~~~dn~YF~d--~yQGl-P~~GYT~~~~kMl~hp~I~V~Ln 215 (374)
T COG0562 140 SL-VGRDLYEAFFKGYTEKQWGLDPKELPASVIKRLPVRLNFDNRYFSD--TYQGL-PKDGYTAMFEKMLDHPNIDVRLN 215 (374)
T ss_pred HH-HHHHHHHHHhccccHHHhCCChHHCCHHHhcccceEEcccCcccCc--ccccC-ccccHHHHHHHHhcCCCceEEec
Confidence 22 3346677778888888899999999886432110000 00111111 11111 22222344444433 46899999
Q ss_pred ceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHHHhhh
Q 009635 293 SRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQ 334 (530)
Q Consensus 293 t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~~~~l 334 (530)
|.-..+... .++ +.+..||.|.+...+-..
T Consensus 216 td~~~~~~~----------~~~--~~~~~VvytG~iD~~Fdy 245 (374)
T COG0562 216 TDFFDVKDQ----------LRA--IPFAPVVYTGPIDAYFDY 245 (374)
T ss_pred CcHHHHhhh----------hcc--cCCCceEEecchHhhhcc
Confidence 877666431 111 445589998887765444
No 76
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.32 E-value=2.9e-11 Score=112.04 Aligned_cols=41 Identities=41% Similarity=0.582 Sum_probs=38.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCcee
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKI 96 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~ 96 (530)
.++||+|||||++||+||+.|++.|++|+|+|++..+||.+
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~ 60 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGS 60 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccc
Confidence 57899999999999999999999999999999999988754
No 77
>PRK07190 hypothetical protein; Provisional
Probab=99.32 E-value=6.4e-10 Score=113.72 Aligned_cols=59 Identities=24% Similarity=0.298 Sum_probs=45.4
Q ss_pred HHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHH-HhhhCC
Q 009635 276 LPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI-LKLQLP 336 (530)
Q Consensus 276 ~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~-~~~ll~ 336 (530)
+.|.+.+.+.|++++.+++|++|+.++++. .+.+.+|++++|+.||.|.+..+ +++.+.
T Consensus 113 ~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v--~v~~~~g~~v~a~~vVgADG~~S~vR~~lg 172 (487)
T PRK07190 113 KLLDDKLKEAGAAVKRNTSVVNIELNQAGC--LTTLSNGERIQSRYVIGADGSRSFVRNHFN 172 (487)
T ss_pred HHHHHHHHHCCCEEEeCCEEEEEEEcCCee--EEEECCCcEEEeCEEEECCCCCHHHHHHcC
Confidence 446667778899999999999999855553 35667788999999999998744 455543
No 78
>PRK06847 hypothetical protein; Provisional
Probab=99.32 E-value=2.7e-10 Score=113.81 Aligned_cols=56 Identities=27% Similarity=0.332 Sum_probs=45.6
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHH
Q 009635 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (530)
Q Consensus 273 ~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (530)
.+.+.|.+.+.+.|++|+++++|++|+.++++ +.|++.+|+++.||.||.|++.+.
T Consensus 108 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~ad~vI~AdG~~s 163 (375)
T PRK06847 108 ALARILADAARAAGADVRLGTTVTAIEQDDDG--VTVTFSDGTTGRYDLVVGADGLYS 163 (375)
T ss_pred HHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCE--EEEEEcCCCEEEcCEEEECcCCCc
Confidence 45566777787789999999999999874433 357788898999999999999754
No 79
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.31 E-value=1.3e-10 Score=116.55 Aligned_cols=62 Identities=15% Similarity=0.174 Sum_probs=46.2
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHH-HhhhC
Q 009635 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI-LKLQL 335 (530)
Q Consensus 272 ~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~-~~~ll 335 (530)
..+.+.|.+.+.+.+...+.+++|++++.++++ + .|++.+|++++||.||.|.+.++ +++.+
T Consensus 111 ~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~-~-~v~~~~g~~~~a~~vI~AdG~~S~vr~~~ 173 (388)
T PRK07494 111 WLLNRALEARVAELPNITRFGDEAESVRPREDE-V-TVTLADGTTLSARLVVGADGRNSPVREAA 173 (388)
T ss_pred HHHHHHHHHHHhcCCCcEEECCeeEEEEEcCCe-E-EEEECCCCEEEEeEEEEecCCCchhHHhc
Confidence 456777888887775444889999999875444 3 47788888999999999998753 34444
No 80
>PRK09126 hypothetical protein; Provisional
Probab=99.30 E-value=2.3e-10 Score=115.03 Aligned_cols=59 Identities=25% Similarity=0.267 Sum_probs=43.2
Q ss_pred hHHHHHHHHH-cCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChH-HHhhhC
Q 009635 275 CLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQL 335 (530)
Q Consensus 275 ~~~l~~~l~~-~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~-~~~~ll 335 (530)
.+.|.+.+.+ .|++|+.+++|++++.++++ +.|++.+|++++||.||.|.|.. .+++.+
T Consensus 113 ~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~--~~v~~~~g~~~~a~~vI~AdG~~S~vr~~~ 173 (392)
T PRK09126 113 RRAAYEAVSQQDGIELLTGTRVTAVRTDDDG--AQVTLANGRRLTARLLVAADSRFSATRRQL 173 (392)
T ss_pred HHHHHHHHhhCCCcEEEcCCeEEEEEEcCCe--EEEEEcCCCEEEeCEEEEeCCCCchhhHhc
Confidence 3445555543 58999999999999874443 35778888899999999999874 334444
No 81
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.30 E-value=3e-09 Score=107.50 Aligned_cols=38 Identities=32% Similarity=0.513 Sum_probs=34.9
Q ss_pred CCCCCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCc
Q 009635 53 RPSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (530)
Q Consensus 53 ~~~~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~ 90 (530)
....++||+|||||++|++||+.|+++|++|+|+|++.
T Consensus 35 ~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 35 LSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred cCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 44567899999999999999999999999999999974
No 82
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.30 E-value=5e-10 Score=111.89 Aligned_cols=63 Identities=24% Similarity=0.374 Sum_probs=49.9
Q ss_pred ccchHHHHHHHHHcC-cEEEecceeeEEEecCCCCEEEEEEc-CCcEEecCEEEEccChH-HHhhhCC
Q 009635 272 ERLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLT-NGNVIDGDAYVFATPVD-ILKLQLP 336 (530)
Q Consensus 272 ~~l~~~l~~~l~~~g-~~i~~~t~V~~I~~~~~g~~~~v~~~-~G~~i~ad~VI~a~~~~-~~~~ll~ 336 (530)
..|.+.|.+.+.+.+ ++++.+++|+.++.++++ +. +++. +|++++||.||-|-|.+ .+++.++
T Consensus 104 ~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~-v~-v~l~~dG~~~~a~llVgADG~~S~vR~~~~ 169 (387)
T COG0654 104 SDLLNALLEAARALPNVTLRFGAEVEAVEQDGDG-VT-VTLSFDGETLDADLLVGADGANSAVRRAAG 169 (387)
T ss_pred HHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCc-eE-EEEcCCCcEEecCEEEECCCCchHHHHhcC
Confidence 466777888888776 899999999999985444 43 7777 99899999999999864 4566666
No 83
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.30 E-value=9.7e-12 Score=126.54 Aligned_cols=59 Identities=22% Similarity=0.280 Sum_probs=47.5
Q ss_pred CccchHHHHHHHHHcC-cEEEecceeeEEEecCCCCEEEEEE---cCCc--EEecCEEEEccChHH
Q 009635 271 PERLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 330 (530)
Q Consensus 271 ~~~l~~~l~~~l~~~g-~~i~~~t~V~~I~~~~~g~~~~v~~---~~G~--~i~ad~VI~a~~~~~ 330 (530)
+..+.++|.+.++++| ++|+++++|++|..++++.+ .|++ ..|+ +++|++||+|++.|+
T Consensus 182 ~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~-~v~~~~~~~G~~~~i~A~~VVvaAGg~s 246 (494)
T PRK05257 182 FGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSW-TVTVKDLKTGEKRTVRAKFVFIGAGGGA 246 (494)
T ss_pred HHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCE-EEEEEEcCCCceEEEEcCEEEECCCcch
Confidence 6789999999999887 79999999999997555533 3443 3453 699999999999987
No 84
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.30 E-value=4.7e-12 Score=128.76 Aligned_cols=59 Identities=12% Similarity=0.200 Sum_probs=47.5
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEE---cCC--cEEecCEEEEccChHH
Q 009635 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNG--NVIDGDAYVFATPVDI 330 (530)
Q Consensus 271 ~~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~---~~G--~~i~ad~VI~a~~~~~ 330 (530)
+..++.+|.+.++++|++|+++++|++|..++++.+ .|++ ..| .+++||+||+|++.|.
T Consensus 177 p~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v-~v~~~~~~~g~~~~i~A~~VV~AAG~~s 240 (483)
T TIGR01320 177 FGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSW-TVTVKNTRTGGKRTLNTRFVFVGAGGGA 240 (483)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeE-EEEEeeccCCceEEEECCEEEECCCcch
Confidence 789999999999999999999999999987544432 3432 334 2699999999999886
No 85
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.30 E-value=1.6e-09 Score=108.88 Aligned_cols=61 Identities=18% Similarity=0.271 Sum_probs=46.3
Q ss_pred cchHHHHHHHHHc-CcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHH-HhhhC
Q 009635 273 RLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI-LKLQL 335 (530)
Q Consensus 273 ~l~~~l~~~l~~~-g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~-~~~ll 335 (530)
.+.+.|.+.+.+. |++++.+++|+++..++++ +.|++.+|++++||.||.|.+.++ +++.+
T Consensus 113 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~~vI~AdG~~S~vR~~~ 175 (391)
T PRK08020 113 VLQLALWQALEAHPNVTLRCPASLQALQRDDDG--WELTLADGEEIQAKLVIGADGANSQVRQMA 175 (391)
T ss_pred HHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCe--EEEEECCCCEEEeCEEEEeCCCCchhHHHc
Confidence 4455677777666 8999999999999874443 357788888899999999998754 44444
No 86
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.30 E-value=1.3e-09 Score=105.03 Aligned_cols=57 Identities=19% Similarity=0.296 Sum_probs=43.6
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEc-CCcEEecCEEEEccChHH
Q 009635 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-NGNVIDGDAYVFATPVDI 330 (530)
Q Consensus 272 ~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~-~G~~i~ad~VI~a~~~~~ 330 (530)
..+.+.|.+.+.+.|++++.++.|+++..++++. .+... ++++++||.||.|++.+.
T Consensus 91 ~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 91 DAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRV--VVIVRGGEGTVTAKIVIGADGSRS 148 (295)
T ss_pred HHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEE--EEEEcCccEEEEeCEEEECCCcch
Confidence 4566778888888899999999999998754442 23333 445899999999999853
No 87
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.30 E-value=8.4e-10 Score=110.76 Aligned_cols=61 Identities=18% Similarity=0.166 Sum_probs=46.7
Q ss_pred ccchHHHHHHHHHcC-cEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHH-HhhhC
Q 009635 272 ERLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI-LKLQL 335 (530)
Q Consensus 272 ~~l~~~l~~~l~~~g-~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~-~~~ll 335 (530)
..+.+.|.+.+++.| ++++ ++.|++|..++++ +.|++.+|++++||.||.|.+.++ +++.+
T Consensus 111 ~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~--~~v~~~~g~~~~a~~vI~adG~~S~vr~~~ 173 (388)
T PRK07608 111 SLIERALWAALRFQPNLTWF-PARAQGLEVDPDA--ATLTLADGQVLRADLVVGADGAHSWVRSQA 173 (388)
T ss_pred HHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCe--EEEEECCCCEEEeeEEEEeCCCCchHHHhc
Confidence 456677888888887 8898 9999999864443 358888887899999999999853 34444
No 88
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.30 E-value=2e-09 Score=107.96 Aligned_cols=61 Identities=33% Similarity=0.467 Sum_probs=46.1
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCcEEEEecCccc--CceeeeeecCCCCEEeeeeceecCCcchHHHHHHHcCCCCC
Q 009635 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL--GGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDR 133 (530)
Q Consensus 57 ~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~--GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~ 133 (530)
++||+|||||++||++|..|++.|++|+|+|++... .+.. ++..+ .++..++++++|+.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~-------------~a~~l---~~~~~~~l~~lGl~~~ 64 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRI-------------RAGVL---EQGTVDLLREAGVGER 64 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCcccccccc-------------ceeEE---CHhHHHHHHHcCChHH
Confidence 579999999999999999999999999999998742 1111 11111 3456688899998643
No 89
>PRK08244 hypothetical protein; Provisional
Probab=99.29 E-value=7.3e-10 Score=114.50 Aligned_cols=62 Identities=21% Similarity=0.170 Sum_probs=43.7
Q ss_pred chHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCC-cEEecCEEEEccChHH-HhhhC
Q 009635 274 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-NVIDGDAYVFATPVDI-LKLQL 335 (530)
Q Consensus 274 l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G-~~i~ad~VI~a~~~~~-~~~ll 335 (530)
+-+.|.+.+++.|++|+.+++|++|..++++..+.+...+| ++++||.||.|.+.++ +++.+
T Consensus 102 le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~vR~~l 165 (493)
T PRK08244 102 TEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSIVRKQA 165 (493)
T ss_pred HHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChHHHHhc
Confidence 34456666777899999999999998755543323333356 4799999999998753 45554
No 90
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.29 E-value=1.3e-10 Score=119.66 Aligned_cols=58 Identities=22% Similarity=0.168 Sum_probs=46.5
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEE--cCC--cEEecCEEEEccChHH
Q 009635 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL--TNG--NVIDGDAYVFATPVDI 330 (530)
Q Consensus 272 ~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~--~~G--~~i~ad~VI~a~~~~~ 330 (530)
..+++.|.+.+++.|++|+++++|++|.. +++++++|.. .+| .++.|+.||+|++.+.
T Consensus 190 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~-~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~ 251 (506)
T PRK06481 190 GYLVDGLLKNVQERKIPLFVNADVTKITE-KDGKVTGVKVKINGKETKTISSKAVVVTTGGFG 251 (506)
T ss_pred HHHHHHHHHHHHHcCCeEEeCCeeEEEEe-cCCEEEEEEEEeCCCeEEEEecCeEEEeCCCcc
Confidence 45788899999999999999999999986 4677767665 333 2689999999997543
No 91
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.28 E-value=1.4e-10 Score=114.88 Aligned_cols=65 Identities=28% Similarity=0.321 Sum_probs=45.2
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEc-CC--cEEecCEEEEccChHH-HhhhCCc
Q 009635 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-NG--NVIDGDAYVFATPVDI-LKLQLPE 337 (530)
Q Consensus 273 ~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~-~G--~~i~ad~VI~a~~~~~-~~~ll~~ 337 (530)
.+-+.|.+.+++.|++|+.++.|+++..+.++..+.+... +| ++|+||.||-|-|.++ +++.+..
T Consensus 112 ~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~vR~~l~~ 180 (356)
T PF01494_consen 112 ELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGAHSKVRKQLGI 180 (356)
T ss_dssp HHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-HHHHHTTG
T ss_pred HHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEeeeecccCcccchhhhccc
Confidence 4556788888888999999999999987655533233333 34 3699999999998754 5555543
No 92
>PLN02697 lycopene epsilon cyclase
Probab=99.27 E-value=5.4e-09 Score=106.72 Aligned_cols=57 Identities=21% Similarity=0.232 Sum_probs=44.5
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHH
Q 009635 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (530)
Q Consensus 272 ~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (530)
..|.+.|.+.+.+.|+++ .++.|++|..++++ +..+++.+|++++|+.||.|++.+.
T Consensus 192 ~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~-~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 192 TLLHEELLRRCVESGVSY-LSSKVDRITEASDG-LRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred HHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCc-EEEEEEcCCcEEECCEEEECCCcCh
Confidence 345567888888889998 78899999875444 3335567788899999999999987
No 93
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.27 E-value=7e-10 Score=111.93 Aligned_cols=62 Identities=23% Similarity=0.324 Sum_probs=49.0
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHH-HhhhC
Q 009635 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI-LKLQL 335 (530)
Q Consensus 272 ~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~-~~~ll 335 (530)
..+.+.|.+.+.+.|++++.+++|++|+.++++ +.|++.+|+++.||.||.|.+.++ +++.+
T Consensus 111 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--v~v~~~~g~~~~ad~vI~AdG~~S~vr~~~ 173 (403)
T PRK07333 111 RVLINALRKRAEALGIDLREATSVTDFETRDEG--VTVTLSDGSVLEARLLVAADGARSKLRELA 173 (403)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCE--EEEEECCCCEEEeCEEEEcCCCChHHHHHc
Confidence 467788888888889999999999999874433 357788888999999999998753 33343
No 94
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.27 E-value=2.1e-09 Score=107.53 Aligned_cols=32 Identities=38% Similarity=0.578 Sum_probs=31.1
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 009635 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~ 89 (530)
+||+|||||++|++||+.|++.|++|+|+|++
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 69999999999999999999999999999997
No 95
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.26 E-value=4.9e-11 Score=121.44 Aligned_cols=59 Identities=24% Similarity=0.288 Sum_probs=48.1
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEc--CCc--EEecCEEEEccChHH
Q 009635 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT--NGN--VIDGDAYVFATPVDI 330 (530)
Q Consensus 272 ~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~--~G~--~i~ad~VI~a~~~~~ 330 (530)
..+++.|.+.+++.|++|+++++|++|..++++++++|+.. +|+ .+.++.||+|++.+.
T Consensus 130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~ 192 (439)
T TIGR01813 130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFG 192 (439)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCC
Confidence 46888999999999999999999999998666777776653 443 478999999998655
No 96
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.26 E-value=3.4e-09 Score=110.60 Aligned_cols=63 Identities=30% Similarity=0.389 Sum_probs=47.9
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceeeeeecCCCCEEeeeeceecCCcchHHHHHHHcCCCCC
Q 009635 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDR 133 (530)
Q Consensus 55 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~ 133 (530)
..++||+|||||++||++|..|++.|++|+|+|++..++...+.. ...+...++++++|+.+.
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~----------------~l~~~~~~~L~~lGl~~~ 70 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAV----------------GIDDEALRVLQAIGLADE 70 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcee----------------eeCHHHHHHHHHcCChhH
Confidence 467899999999999999999999999999999987654221110 123456678888887643
No 97
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.25 E-value=7.5e-11 Score=120.99 Aligned_cols=58 Identities=28% Similarity=0.320 Sum_probs=47.5
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEc--CC--cEEecCEEEEccChH
Q 009635 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT--NG--NVIDGDAYVFATPVD 329 (530)
Q Consensus 271 ~~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~--~G--~~i~ad~VI~a~~~~ 329 (530)
...++..|.+.+++.|++|+++++|++|.. +++++++|++. +| ..+.|+.||+|++..
T Consensus 130 g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~-~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~ 191 (466)
T PRK08274 130 GKALVNALYRSAERLGVEIRYDAPVTALEL-DDGRFVGARAGSAAGGAERIRAKAVVLAAGGF 191 (466)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEe-cCCeEEEEEEEccCCceEEEECCEEEECCCCC
Confidence 357888999999999999999999999987 46777787763 23 368999999999754
No 98
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.25 E-value=3.5e-11 Score=104.31 Aligned_cols=42 Identities=43% Similarity=0.558 Sum_probs=34.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceee
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~ 97 (530)
.++||+|||||++||+||+.|++.|++|+|+|++..+||.+.
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~ 57 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMW 57 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTT
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCcccc
Confidence 467999999999999999999999999999999998888654
No 99
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.25 E-value=6.7e-09 Score=104.18 Aligned_cols=57 Identities=12% Similarity=0.071 Sum_probs=44.1
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHH
Q 009635 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (530)
Q Consensus 272 ~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (530)
..|.+.|.+.+.+.|++++ ++.|+.+..++++ .+.|++.+|++++|+.||.|+|.+.
T Consensus 85 ~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~-~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 85 TRLHEELLQKCPEGGVLWL-ERKAIHAEADGVA-LSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred HHHHHHHHHHHHhcCcEEE-ccEEEEEEecCCc-eeEEEeCCCCEEEeCEEEECCCCch
Confidence 4556677888888888885 6689998864233 3467888888899999999999876
No 100
>PRK06834 hypothetical protein; Provisional
Probab=99.24 E-value=1.6e-09 Score=110.87 Aligned_cols=60 Identities=15% Similarity=0.177 Sum_probs=46.2
Q ss_pred chHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHH-HhhhC
Q 009635 274 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI-LKLQL 335 (530)
Q Consensus 274 l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~-~~~ll 335 (530)
+-+.|.+.+++.|++|+.+++|++|..++++ +.|++.+|++++||.||.|.+.++ +++.+
T Consensus 102 le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~--v~v~~~~g~~i~a~~vVgADG~~S~vR~~l 162 (488)
T PRK06834 102 IERILAEWVGELGVPIYRGREVTGFAQDDTG--VDVELSDGRTLRAQYLVGCDGGRSLVRKAA 162 (488)
T ss_pred HHHHHHHHHHhCCCEEEcCCEEEEEEEcCCe--EEEEECCCCEEEeCEEEEecCCCCCcHhhc
Confidence 4455777777889999999999999975444 347777888899999999998754 34444
No 101
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.24 E-value=3e-09 Score=107.18 Aligned_cols=61 Identities=21% Similarity=0.309 Sum_probs=45.3
Q ss_pred chHHHHHHHHHc-CcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChH-HHhhhCC
Q 009635 274 LCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQLP 336 (530)
Q Consensus 274 l~~~l~~~l~~~-g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~-~~~~ll~ 336 (530)
+.+.|.+.+.+. |++++.+++|++|..++++ +.|++.+|++++||.||.|.|.+ .+++.+.
T Consensus 113 l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~lvIgADG~~S~vR~~~~ 175 (405)
T PRK08850 113 IQLALLEQVQKQDNVTLLMPARCQSIAVGESE--AWLTLDNGQALTAKLVVGADGANSWLRRQMD 175 (405)
T ss_pred HHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCe--EEEEECCCCEEEeCEEEEeCCCCChhHHHcC
Confidence 334566666554 6999999999999875444 35788899899999999999874 3455543
No 102
>PRK07588 hypothetical protein; Provisional
Probab=99.24 E-value=2.6e-09 Score=107.14 Aligned_cols=54 Identities=22% Similarity=0.219 Sum_probs=40.5
Q ss_pred chHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHH
Q 009635 274 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (530)
Q Consensus 274 l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (530)
|.+.|.+.+. .|++|+++++|++|+.++++ + .|++.+|+++++|.||-|.|.++
T Consensus 105 l~~~L~~~~~-~~v~i~~~~~v~~i~~~~~~-v-~v~~~~g~~~~~d~vIgADG~~S 158 (391)
T PRK07588 105 LAAAIYTAID-GQVETIFDDSIATIDEHRDG-V-RVTFERGTPRDFDLVIGADGLHS 158 (391)
T ss_pred HHHHHHHhhh-cCeEEEeCCEEeEEEECCCe-E-EEEECCCCEEEeCEEEECCCCCc
Confidence 3344444443 36999999999999875443 3 57888998899999999998753
No 103
>PRK08013 oxidoreductase; Provisional
Probab=99.24 E-value=3.9e-09 Score=106.08 Aligned_cols=62 Identities=11% Similarity=0.141 Sum_probs=47.1
Q ss_pred cchHHHHHHHHHc-CcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChH-HHhhhCC
Q 009635 273 RLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQLP 336 (530)
Q Consensus 273 ~l~~~l~~~l~~~-g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~-~~~~ll~ 336 (530)
.|.+.|.+.+.+. |++++.++.|++|+.++++ +.|++.+|++++||.||-|-|.+ .+++.+.
T Consensus 112 ~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~--v~v~~~~g~~i~a~lvVgADG~~S~vR~~~~ 175 (400)
T PRK08013 112 VIHYALWQKAQQSSDITLLAPAELQQVAWGENE--AFLTLKDGSMLTARLVVGADGANSWLRNKAD 175 (400)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe--EEEEEcCCCEEEeeEEEEeCCCCcHHHHHcC
Confidence 4556677777765 7999999999999875444 35777889899999999999875 4455553
No 104
>PRK06185 hypothetical protein; Provisional
Probab=99.24 E-value=9.1e-09 Score=103.92 Aligned_cols=63 Identities=16% Similarity=0.112 Sum_probs=44.8
Q ss_pred cchHHHHHHHHHc-CcEEEecceeeEEEecCCCCEEEEE--EcCCc-EEecCEEEEccChHH-HhhhCC
Q 009635 273 RLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFL--LTNGN-VIDGDAYVFATPVDI-LKLQLP 336 (530)
Q Consensus 273 ~l~~~l~~~l~~~-g~~i~~~t~V~~I~~~~~g~~~~v~--~~~G~-~i~ad~VI~a~~~~~-~~~ll~ 336 (530)
.+.+.|.+.+.+. |++++.++.|+++..+ ++.+++|. +.+|+ +++||.||.|.|.++ +++.++
T Consensus 109 ~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~-~~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~vr~~~g 176 (407)
T PRK06185 109 DFLDFLAEEASAYPNFTLRMGAEVTGLIEE-GGRVTGVRARTPDGPGEIRADLVVGADGRHSRVRALAG 176 (407)
T ss_pred HHHHHHHHHHhhCCCcEEEeCCEEEEEEEe-CCEEEEEEEEcCCCcEEEEeCEEEECCCCchHHHHHcC
Confidence 4555677766654 7999999999999874 44454444 34664 799999999998754 455543
No 105
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.22 E-value=4e-09 Score=105.50 Aligned_cols=36 Identities=42% Similarity=0.575 Sum_probs=32.9
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccC
Q 009635 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLG 93 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~G 93 (530)
+||+|||||++|++||+.|+++|++|+|+|++...+
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~ 36 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNA 36 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence 589999999999999999999999999999975433
No 106
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.22 E-value=5e-09 Score=104.74 Aligned_cols=60 Identities=12% Similarity=0.197 Sum_probs=44.5
Q ss_pred chHHHHHHHHHc-CcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHH-HhhhC
Q 009635 274 LCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI-LKLQL 335 (530)
Q Consensus 274 l~~~l~~~l~~~-g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~-~~~ll 335 (530)
|-..|.+.+.+. |++++.++.|++++.++++ +.|++.+|++++||.||.|.|.++ +++.+
T Consensus 112 l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~--~~v~~~~g~~~~~~lvIgADG~~S~vR~~~ 173 (384)
T PRK08849 112 IQLGLWQQFAQYPNLTLMCPEKLADLEFSAEG--NRVTLESGAEIEAKWVIGADGANSQVRQLA 173 (384)
T ss_pred HHHHHHHHHHhCCCeEEECCCceeEEEEcCCe--EEEEECCCCEEEeeEEEEecCCCchhHHhc
Confidence 334455655543 6899999999999875554 358888999999999999998854 34444
No 107
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.21 E-value=1.4e-08 Score=106.22 Aligned_cols=64 Identities=31% Similarity=0.375 Sum_probs=48.1
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceeeeeecCCCCEEeeeeceecCCcchHHHHHHHcCCCCC
Q 009635 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDR 133 (530)
Q Consensus 54 ~~~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~ 133 (530)
.+.++||+|||||++||++|+.|++.|++|+|+|++.......+.. ...+...++++++|+...
T Consensus 20 ~~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~----------------~l~~~~~~~l~~lGl~~~ 83 (547)
T PRK08132 20 DPARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAI----------------CFAKRSLEIFDRLGCGER 83 (547)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEE----------------EEcHHHHHHHHHcCCcHH
Confidence 3567899999999999999999999999999999987543211110 113456788889988643
No 108
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.20 E-value=2e-10 Score=116.06 Aligned_cols=59 Identities=19% Similarity=0.184 Sum_probs=45.8
Q ss_pred CccchHHHHHHHHH-cCcEEEecceeeEEEecCCCCEEEEE---EcCCc--EEecCEEEEccChHH
Q 009635 271 PERLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFL---LTNGN--VIDGDAYVFATPVDI 330 (530)
Q Consensus 271 ~~~l~~~l~~~l~~-~g~~i~~~t~V~~I~~~~~g~~~~v~---~~~G~--~i~ad~VI~a~~~~~ 330 (530)
+..+.++|.+.+.+ .|++|+++++|+.|...+++.+ .|+ +..|+ +++||+||+|+++|+
T Consensus 183 ~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w-~v~v~~t~~g~~~~i~Ad~VV~AAGawS 247 (497)
T PRK13339 183 FGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGW-EVTVKDRNTGEKREQVADYVFIGAGGGA 247 (497)
T ss_pred HHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCE-EEEEEecCCCceEEEEcCEEEECCCcch
Confidence 56788999999865 4899999999999987524332 243 44553 699999999999987
No 109
>PRK06126 hypothetical protein; Provisional
Probab=99.20 E-value=4.9e-09 Score=109.78 Aligned_cols=63 Identities=27% Similarity=0.345 Sum_probs=46.4
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceeeeeecCCCCEEeeeeceecCCcchHHHHHHHcCCCCC
Q 009635 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDR 133 (530)
Q Consensus 55 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~ 133 (530)
+.++||+|||||++||++|..|++.|++|+|+|++....-. + .+. ...+...++++++|+.+.
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~--------~-----ra~---~l~~r~~e~L~~lGl~~~ 67 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFN--------P-----KAN---TTSARSMEHFRRLGIADE 67 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCC--------C-----ccc---cCCHHHHHHHHhcChHHH
Confidence 46789999999999999999999999999999987532210 0 011 123456678888887643
No 110
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.17 E-value=1.1e-08 Score=103.07 Aligned_cols=53 Identities=19% Similarity=0.272 Sum_probs=40.9
Q ss_pred HHHHHHHHH-cCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHH
Q 009635 276 LPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (530)
Q Consensus 276 ~~l~~~l~~-~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (530)
+.|.+.+.+ .|++++.+++|++|..++++ + .|++.+|+++++|.||.|.+.+.
T Consensus 116 ~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~-~-~v~~~~g~~~~a~~vI~AdG~~S 169 (395)
T PRK05732 116 QRLFALLDKAPGVTLHCPARVANVERTQGS-V-RVTLDDGETLTGRLLVAADGSHS 169 (395)
T ss_pred HHHHHHHhcCCCcEEEcCCEEEEEEEcCCe-E-EEEECCCCEEEeCEEEEecCCCh
Confidence 445666655 37999999999999864443 3 47788888899999999998754
No 111
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.17 E-value=1.3e-09 Score=113.14 Aligned_cols=58 Identities=14% Similarity=0.184 Sum_probs=46.7
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEc-CCc--EEecC-EEEEccChHH
Q 009635 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-NGN--VIDGD-AYVFATPVDI 330 (530)
Q Consensus 272 ~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~-~G~--~i~ad-~VI~a~~~~~ 330 (530)
..|+..|.+.+++.|++|+++++|++|.. +++++++|... +|+ .|.|+ .||+||+.+.
T Consensus 217 ~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~-~~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~ 278 (564)
T PRK12845 217 QALAAGLFAGVLRAGIPIWTETSLVRLTD-DGGRVTGAVVDHRGREVTVTARRGVVLAAGGFD 278 (564)
T ss_pred HHHHHHHHHHHHHCCCEEEecCEeeEEEe-cCCEEEEEEEEECCcEEEEEcCCEEEEecCCcc
Confidence 67889999999999999999999999986 46888888643 343 36664 7999997654
No 112
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.16 E-value=1.5e-08 Score=100.93 Aligned_cols=62 Identities=8% Similarity=0.032 Sum_probs=46.2
Q ss_pred ccchHHHHHHHHHcC-cEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChH-HHhhhCC
Q 009635 272 ERLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQLP 336 (530)
Q Consensus 272 ~~l~~~l~~~l~~~g-~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~-~~~~ll~ 336 (530)
..|.+.|.+.+.+.+ ++++.++.|++|..++++ + .|++.++ +++||.||-|-|.+ .+++.+.
T Consensus 104 ~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~-v-~v~~~~~-~~~adlvIgADG~~S~vR~~l~ 167 (374)
T PRK06617 104 SDFKKILLSKITNNPLITLIDNNQYQEVISHNDY-S-IIKFDDK-QIKCNLLIICDGANSKVRSHYF 167 (374)
T ss_pred HHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCe-E-EEEEcCC-EEeeCEEEEeCCCCchhHHhcC
Confidence 355667777777765 889999999999875444 3 4777777 89999999999875 4444543
No 113
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.16 E-value=1e-09 Score=111.18 Aligned_cols=58 Identities=24% Similarity=0.355 Sum_probs=46.3
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEc---CCc--EEecCEEEEccChHH
Q 009635 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NGN--VIDGDAYVFATPVDI 330 (530)
Q Consensus 272 ~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~---~G~--~i~ad~VI~a~~~~~ 330 (530)
..++..|.+.++++|++|+++++|++|.. +++++++|... +|+ +|+|+.||+||+...
T Consensus 141 ~~~~~~l~~~~~~~gv~i~~~~~~~~Li~-e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~ 203 (417)
T PF00890_consen 141 KALIEALAKAAEEAGVDIRFNTRVTDLIT-EDGRVTGVVAENPADGEFVRIKAKAVILATGGFG 203 (417)
T ss_dssp HHHHHHHHHHHHHTTEEEEESEEEEEEEE-ETTEEEEEEEEETTTCEEEEEEESEEEE----BG
T ss_pred HHHHHHHHHHHhhcCeeeeccceeeeEEE-eCCceeEEEEEECCCCeEEEEeeeEEEeccCccc
Confidence 56889999999999999999999999998 46788888876 454 588999999998765
No 114
>PRK11445 putative oxidoreductase; Provisional
Probab=99.16 E-value=1.9e-08 Score=99.17 Aligned_cols=62 Identities=26% Similarity=0.313 Sum_probs=44.1
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceeeeeecCCCCEEeeeeceecCCcchHHHHHHHcCCC
Q 009635 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGIN 131 (530)
Q Consensus 57 ~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~ 131 (530)
.+||+|||||++|+++|+.|++. ++|+|+|+++..+-.-.. ...|. ...++..+.++++|+.
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~--------~~~g~----~l~~~~~~~L~~lgl~ 62 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFS--------KPCGG----LLAPDAQKSFAKDGLT 62 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCcccccccc--------CcCcC----ccCHHHHHHHHHcCCC
Confidence 37999999999999999999999 999999998754210000 00111 1234567888888875
No 115
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=99.15 E-value=5.3e-10 Score=109.93 Aligned_cols=198 Identities=15% Similarity=0.167 Sum_probs=109.5
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHHHhhhCCccccccHHHHHHhc
Q 009635 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEK 350 (530)
Q Consensus 271 ~~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~~~~ll~~~~~~~~~~~~l~~ 350 (530)
+..++..+.+.+.++|++|+.+++|++|.. +++.++.|.+.+| +++||+||+|+++|+ ..+++. + +
T Consensus 136 p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~-~~~~~~~v~~~~g-~~~a~~vV~a~G~~~-~~l~~~---~------~-- 201 (337)
T TIGR02352 136 PRALLKALEKALEKLGVEIIEHTEVQHIEI-RGEKVTAIVTPSG-DVQADQVVLAAGAWA-GELLPL---P------L-- 201 (337)
T ss_pred hHHHHHHHHHHHHHcCCEEEccceEEEEEe-eCCEEEEEEcCCC-EEECCEEEEcCChhh-hhcccC---C------c--
Confidence 789999999999999999999999999997 4555667888888 899999999999998 445441 1 0
Q ss_pred cCCccEEEEEEEeccccccccCccccccCCcceeeeccCcccccccCCCccEEEEEeeCccccCCCChhHHHHHHHHHHH
Q 009635 351 LVGVPVINIHIWFDRKLKNTYDHLLFSRSSLLSVYADMSLTCKEYYNPNQSMLELVFAPAEEWISCSDSEIIDATMKELA 430 (530)
Q Consensus 351 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~~~~~~~~~~~~~~~e~~~~~~~~~l~ 430 (530)
. ++....+.++.+.....+ .+......+..... ...+++..++..... ...+....+++..+.+++.+.
T Consensus 202 -~--~~~g~~~~~~~~~~~~~~------~~~~~~~~~~~~y~-~p~~~g~~~iG~~~~-~~~~~~~~~~~~~~~l~~~~~ 270 (337)
T TIGR02352 202 -R--PVRGQPLRLEAPAVPLLN------RPLRAVVYGRRVYI-VPRRDGRLVVGATME-ESGFDTTPTLGGIKELLRDAY 270 (337)
T ss_pred -c--ccCceEEEeeccccccCC------cccceEEEcCCEEE-EEcCCCeEEEEEecc-ccCccCCCCHHHHHHHHHHHH
Confidence 1 111111222221100000 01100000100000 001233333332221 223333345667888999999
Q ss_pred HhCCCCcccccccceEEEEEEeecCCceeecCCCCCCCCCCCCC--CCCceEEecccccCCCCCcHHHHHHHHHHHHHHH
Q 009635 431 KLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRS--PVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAI 508 (530)
Q Consensus 431 ~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~l~~aG~~~~~~~~~~i~gA~~sg~~aA~~v 508 (530)
+.+|..... .+. ..|. +.+...+. ..|-+.. ..+|+|++..+... ++--+...|+..|+.|
T Consensus 271 ~~~P~l~~~-----~~~-~~~~----g~r~~t~D---~~piig~~~~~~~~~~~~g~~g~----G~~~~p~~g~~la~~i 333 (337)
T TIGR02352 271 TILPALKEA-----RLL-ETWA----GLRPGTPD---NLPYIGEHPEDRRLLIATGHYRN----GILLAPATAEVIADLI 333 (337)
T ss_pred HhCCCcccC-----cHH-Hhee----cCCCCCCC---CCCEeCccCCCCCEEEEcccccC----ceehhhHHHHHHHHHH
Confidence 999963221 111 1111 12222221 2222111 24689999865443 4666777899999988
Q ss_pred HH
Q 009635 509 VQ 510 (530)
Q Consensus 509 l~ 510 (530)
+.
T Consensus 334 ~~ 335 (337)
T TIGR02352 334 LG 335 (337)
T ss_pred hc
Confidence 74
No 116
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.15 E-value=6.1e-10 Score=115.37 Aligned_cols=58 Identities=16% Similarity=0.188 Sum_probs=46.1
Q ss_pred ccchHHHHHHHHHc-CcEEEecceeeEEEecC-CCCEEEEEEc-CCc--EEecCEEEEccChH
Q 009635 272 ERLCLPIVEHIQSL-GGEVRLNSRVQKIELND-DGTVKNFLLT-NGN--VIDGDAYVFATPVD 329 (530)
Q Consensus 272 ~~l~~~l~~~l~~~-g~~i~~~t~V~~I~~~~-~g~~~~v~~~-~G~--~i~ad~VI~a~~~~ 329 (530)
..++..|.+.+.++ |++|++++.|++|..++ ++++++|... +|+ .+.|+.||+||+..
T Consensus 134 ~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~ 196 (553)
T PRK07395 134 RAIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGGG 196 (553)
T ss_pred HHHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCCC
Confidence 56888888888765 89999999999998753 3778887653 453 37899999999875
No 117
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.15 E-value=1.1e-09 Score=115.31 Aligned_cols=54 Identities=17% Similarity=0.158 Sum_probs=43.2
Q ss_pred HHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEc---CCc--EEecCEEEEccChHH
Q 009635 276 LPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NGN--VIDGDAYVFATPVDI 330 (530)
Q Consensus 276 ~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~---~G~--~i~ad~VI~a~~~~~ 330 (530)
+.|.+.+++.|++|++++.|++|..+ ++++++|... +|+ .|.|+.||+||+.+.
T Consensus 174 ~~L~~~~~~~gV~i~~~t~v~~Li~d-~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g 232 (640)
T PRK07573 174 QALSRQIAAGTVKMYTRTEMLDLVVV-DGRARGIVARNLVTGEIERHTADAVVLATGGYG 232 (640)
T ss_pred HHHHHHHHhcCCEEEeceEEEEEEEe-CCEEEEEEEEECCCCcEEEEECCEEEECCCCcc
Confidence 55666777789999999999999874 6788888764 453 589999999998754
No 118
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.15 E-value=6.9e-10 Score=111.93 Aligned_cols=57 Identities=14% Similarity=0.105 Sum_probs=44.7
Q ss_pred ccchHHHHHHHHHc-CcEEEecceeeEEEecCCCCEEEEE-EcCCc--EEecCEEEEccChH
Q 009635 272 ERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFL-LTNGN--VIDGDAYVFATPVD 329 (530)
Q Consensus 272 ~~l~~~l~~~l~~~-g~~i~~~t~V~~I~~~~~g~~~~v~-~~~G~--~i~ad~VI~a~~~~ 329 (530)
..+++.|.+.++++ |++|+++++|++|.. +++++++|. +.+|+ ++.|+.||+||+..
T Consensus 128 ~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~-~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~ 188 (433)
T PRK06175 128 KKVEKILLKKVKKRKNITIIENCYLVDIIE-NDNTCIGAICLKDNKQINIYSKVTILATGGI 188 (433)
T ss_pred HHHHHHHHHHHHhcCCCEEEECcEeeeeEe-cCCEEEEEEEEECCcEEEEEcCeEEEccCcc
Confidence 46788888888754 899999999999986 456677754 33454 58999999999874
No 119
>PLN02985 squalene monooxygenase
Probab=99.13 E-value=3.5e-08 Score=101.49 Aligned_cols=65 Identities=26% Similarity=0.358 Sum_probs=47.1
Q ss_pred CCCCCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceeeeeecCCCCEEeeeeceecCCcchHHHHHHHcCCCC
Q 009635 53 RPSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGIND 132 (530)
Q Consensus 53 ~~~~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~ 132 (530)
..+..+||+|||||++|+++|+.|+++|++|+|+|+......+. .| . ...++-.+.++++|+.+
T Consensus 39 ~~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~------~g-------~---~L~p~g~~~L~~LGl~d 102 (514)
T PLN02985 39 RKDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERM------MG-------E---FMQPGGRFMLSKLGLED 102 (514)
T ss_pred CcCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccc------cc-------c---ccCchHHHHHHHcCCcc
Confidence 34567899999999999999999999999999999974321110 01 1 12344567788888865
Q ss_pred C
Q 009635 133 R 133 (530)
Q Consensus 133 ~ 133 (530)
.
T Consensus 103 ~ 103 (514)
T PLN02985 103 C 103 (514)
T ss_pred h
Confidence 3
No 120
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.13 E-value=1.8e-09 Score=112.15 Aligned_cols=59 Identities=15% Similarity=0.140 Sum_probs=47.9
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEc-------CC-cEEecCEEEEccChHH
Q 009635 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-------NG-NVIDGDAYVFATPVDI 330 (530)
Q Consensus 272 ~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~-------~G-~~i~ad~VI~a~~~~~ 330 (530)
..+.+.|.+.+++.|++|+.++.|++|..++++++++|... +| ..+.|+.||+||+...
T Consensus 144 ~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~ 210 (541)
T PRK07804 144 AEVQRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLG 210 (541)
T ss_pred HHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCC
Confidence 56888899998888999999999999987555677777653 22 3689999999998854
No 121
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=99.13 E-value=5.2e-09 Score=95.86 Aligned_cols=37 Identities=35% Similarity=0.462 Sum_probs=33.4
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHC----CCcEEEEecCcc
Q 009635 55 SKPLKVVIAGAGLAGLSTAKYLADA----GHKPLLLEARDV 91 (530)
Q Consensus 55 ~~~~dVvIIGaG~aGl~aA~~L~~~----G~~V~vlEa~~~ 91 (530)
+..+||+|||||.+|+++|+.|.++ |++|+|+|+.+.
T Consensus 84 ~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddt 124 (509)
T KOG2853|consen 84 PYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDT 124 (509)
T ss_pred ccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCc
Confidence 4579999999999999999999874 799999999875
No 122
>PRK12839 hypothetical protein; Provisional
Probab=99.13 E-value=2.6e-09 Score=111.16 Aligned_cols=60 Identities=17% Similarity=0.274 Sum_probs=47.6
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEE--cCCc-EEe-cCEEEEccChHH
Q 009635 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL--TNGN-VID-GDAYVFATPVDI 330 (530)
Q Consensus 271 ~~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~--~~G~-~i~-ad~VI~a~~~~~ 330 (530)
...|+..|.+.+++.|++|+++++|++|..++++++++|.. .+|+ .+. ++.||+|++.+.
T Consensus 213 g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~ 276 (572)
T PRK12839 213 GTALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFP 276 (572)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCcc
Confidence 35788899999999999999999999998755788888864 3443 244 589999997754
No 123
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.12 E-value=1.9e-10 Score=104.25 Aligned_cols=51 Identities=29% Similarity=0.418 Sum_probs=35.8
Q ss_pred HHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHH
Q 009635 278 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (530)
Q Consensus 278 l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (530)
+.+.+++.++++++++.|++|..++++ +.|++.+|++++||+||+|||...
T Consensus 88 l~~~~~~~~l~i~~~~~V~~v~~~~~~--w~v~~~~~~~~~a~~VVlAtG~~~ 138 (203)
T PF13738_consen 88 LQEYAERFGLEIRFNTRVESVRRDGDG--WTVTTRDGRTIRADRVVLATGHYS 138 (203)
T ss_dssp HHHHHHHTTGGEETS--EEEEEEETTT--EEEEETTS-EEEEEEEEE---SSC
T ss_pred HHHHHhhcCcccccCCEEEEEEEeccE--EEEEEEecceeeeeeEEEeeeccC
Confidence 444455667889999999999997666 458899988899999999999653
No 124
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.12 E-value=3e-09 Score=111.44 Aligned_cols=59 Identities=17% Similarity=0.199 Sum_probs=48.2
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEc--CCc-EEec-CEEEEccChHH
Q 009635 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT--NGN-VIDG-DAYVFATPVDI 330 (530)
Q Consensus 271 ~~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~--~G~-~i~a-d~VI~a~~~~~ 330 (530)
...|+..|.+.+++.|++|+++++|++|..+ ++++++|... ++. +|+| +.||+|++.+.
T Consensus 216 g~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~-~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 278 (581)
T PRK06134 216 GNALVARLLKSAEDLGVRIWESAPARELLRE-DGRVAGAVVETPGGLQEIRARKGVVLAAGGFP 278 (581)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCEEEEEEEEECCcEEEEEeCCEEEEcCCCcc
Confidence 4578899999999999999999999999874 6777777653 342 4789 89999998875
No 125
>PLN02661 Putative thiazole synthesis
Probab=99.12 E-value=2e-09 Score=102.34 Aligned_cols=42 Identities=38% Similarity=0.404 Sum_probs=37.5
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHC-CCcEEEEecCcccCcee
Q 009635 55 SKPLKVVIAGAGLAGLSTAKYLADA-GHKPLLLEARDVLGGKI 96 (530)
Q Consensus 55 ~~~~dVvIIGaG~aGl~aA~~L~~~-G~~V~vlEa~~~~GG~~ 96 (530)
..++||+|||||++|++||+.|++. |++|+|+|+...+||..
T Consensus 90 ~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~ 132 (357)
T PLN02661 90 YADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGA 132 (357)
T ss_pred cccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccce
Confidence 4568999999999999999999986 89999999998887743
No 126
>PRK06996 hypothetical protein; Provisional
Probab=99.12 E-value=2.1e-08 Score=100.67 Aligned_cols=63 Identities=11% Similarity=0.026 Sum_probs=47.0
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCC---cEEecCEEEEccCh--HHHhhhCC
Q 009635 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG---NVIDGDAYVFATPV--DILKLQLP 336 (530)
Q Consensus 272 ~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G---~~i~ad~VI~a~~~--~~~~~ll~ 336 (530)
..+.+.|.+.+.+.|++++.+++|++++.++++ +.|+..+| ++++||.||-|.+. ....+.+.
T Consensus 115 ~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~--v~v~~~~~~g~~~i~a~lvIgADG~~~s~~r~~~~ 182 (398)
T PRK06996 115 GSLVAALARAVRGTPVRWLTSTTAHAPAQDADG--VTLALGTPQGARTLRARIAVQAEGGLFHDQKADAG 182 (398)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCe--EEEEECCCCcceEEeeeEEEECCCCCchHHHHHcC
Confidence 356677888888889999999999999875454 24666544 58999999999884 44455543
No 127
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.12 E-value=4.5e-10 Score=112.25 Aligned_cols=56 Identities=21% Similarity=0.252 Sum_probs=45.1
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHH
Q 009635 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (530)
Q Consensus 272 ~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (530)
..+.+.|.+.+++.|++++++++|++|..+ ++ .+.|++ +++++.||.||+|++...
T Consensus 105 ~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~-~~-~~~v~~-~~~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 105 ADVLDALLNELKELGVEILTNSKVKSIKKD-DN-GFGVET-SGGEYEADKVILATGGLS 160 (400)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEec-CC-eEEEEE-CCcEEEcCEEEECCCCcc
Confidence 567788888898999999999999999764 33 345766 455899999999998744
No 128
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.11 E-value=9.4e-10 Score=115.36 Aligned_cols=59 Identities=12% Similarity=0.133 Sum_probs=49.0
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEE---cCCc--EEecCEEEEccChHH
Q 009635 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 330 (530)
Q Consensus 272 ~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~---~~G~--~i~ad~VI~a~~~~~ 330 (530)
..++..|.+.+.+.|++|++++.|++|..++++++++|.. .+|+ .|.|+.||+||+...
T Consensus 149 ~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 212 (598)
T PRK09078 149 HAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYG 212 (598)
T ss_pred HHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCc
Confidence 4688889998888999999999999998755578888864 3554 689999999998764
No 129
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.11 E-value=1e-09 Score=115.31 Aligned_cols=59 Identities=10% Similarity=0.102 Sum_probs=48.7
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEE---cCCc--EEecCEEEEccChHH
Q 009635 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 330 (530)
Q Consensus 272 ~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~---~~G~--~i~ad~VI~a~~~~~ 330 (530)
..++..|.+.+++.|++|++++.|+++..+++|++++|.. .+|+ .|.|+.||+||+...
T Consensus 166 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 229 (617)
T PTZ00139 166 HAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYG 229 (617)
T ss_pred HHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCc
Confidence 5788899999988999999999999998745778888764 3553 588999999997754
No 130
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.11 E-value=4.2e-08 Score=99.70 Aligned_cols=64 Identities=11% Similarity=0.165 Sum_probs=46.7
Q ss_pred cchHHHHHHHHHcC---cEEEecceeeEEEec-----CCCCEEEEEEcCCcEEecCEEEEccChH-HHhhhCC
Q 009635 273 RLCLPIVEHIQSLG---GEVRLNSRVQKIELN-----DDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQLP 336 (530)
Q Consensus 273 ~l~~~l~~~l~~~g---~~i~~~t~V~~I~~~-----~~g~~~~v~~~~G~~i~ad~VI~a~~~~-~~~~ll~ 336 (530)
.+.+.|.+.+.+.+ ++++.+++|++|+.+ +++..+.|++.+|++++||.||-|-|.+ .+++.+.
T Consensus 118 ~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~vR~~~g 190 (437)
T TIGR01989 118 NIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSNVRKAAN 190 (437)
T ss_pred HHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCChhHHHcC
Confidence 44556777777664 899999999999752 2233346888899999999999999875 4455543
No 131
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.10 E-value=3.7e-08 Score=103.98 Aligned_cols=62 Identities=24% Similarity=0.366 Sum_probs=47.5
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHH-CCCcEEEEecCccc--CceeeeeecCCCCEEeeeeceecCCcchHHHHHHHcCC
Q 009635 54 PSKPLKVVIAGAGLAGLSTAKYLAD-AGHKPLLLEARDVL--GGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGI 130 (530)
Q Consensus 54 ~~~~~dVvIIGaG~aGl~aA~~L~~-~G~~V~vlEa~~~~--GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~ 130 (530)
.++++||+|||||++||++|..|++ .|.+|+|+|+++.. .|+.. +..+...++++++|+
T Consensus 29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~------------------gl~prtleiL~~lGl 90 (634)
T PRK08294 29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQAD------------------GIACRTMEMFQAFGF 90 (634)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeee------------------EEChHHHHHHHhccc
Confidence 3568899999999999999999999 49999999987532 12111 124567789999998
Q ss_pred CCC
Q 009635 131 NDR 133 (530)
Q Consensus 131 ~~~ 133 (530)
...
T Consensus 91 ~d~ 93 (634)
T PRK08294 91 AER 93 (634)
T ss_pred hHH
Confidence 653
No 132
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.10 E-value=9.7e-10 Score=114.90 Aligned_cols=59 Identities=17% Similarity=0.068 Sum_probs=48.8
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEE---cCCc--EEecCEEEEccChHH
Q 009635 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 330 (530)
Q Consensus 272 ~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~---~~G~--~i~ad~VI~a~~~~~ 330 (530)
..|+..|.+.+.+.|++|++++.|+++..+++|++++|.. .+|+ .|.|+.||+||+...
T Consensus 143 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 206 (588)
T PRK08958 143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAG 206 (588)
T ss_pred HHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcc
Confidence 5688889888888899999999999998755788888875 3554 578999999998764
No 133
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.10 E-value=4.4e-09 Score=109.93 Aligned_cols=59 Identities=19% Similarity=0.221 Sum_probs=47.1
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcC-Cc--EEecC-EEEEccChHH
Q 009635 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN-GN--VIDGD-AYVFATPVDI 330 (530)
Q Consensus 272 ~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~-G~--~i~ad-~VI~a~~~~~ 330 (530)
..++..|.+.+++.|++|+++++|++|..+++|++++|...+ |+ .|.|+ .||+||+.+.
T Consensus 213 ~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~ 275 (584)
T PRK12835 213 QSLVARLRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGGFD 275 (584)
T ss_pred HHHHHHHHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCccc
Confidence 467777888888889999999999999986678888887543 43 47887 4999997654
No 134
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.10 E-value=1.3e-09 Score=113.64 Aligned_cols=58 Identities=16% Similarity=0.014 Sum_probs=47.8
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEc---CCc--EEecCEEEEccChHH
Q 009635 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NGN--VIDGDAYVFATPVDI 330 (530)
Q Consensus 272 ~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~---~G~--~i~ad~VI~a~~~~~ 330 (530)
..++..|.+.+.+.|++|++++.|+++.. ++|++++|... +|+ .+.|+.||+||+...
T Consensus 136 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~-~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 136 MALLHTLFERTSGLNVDFYNEWFSLDLVT-DNKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred HHHHHHHHHHHHhCCCEEEeCcEEEEEEE-ECCEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence 46788898888888999999999999998 46888888754 332 588999999998765
No 135
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.09 E-value=1.9e-09 Score=112.94 Aligned_cols=59 Identities=14% Similarity=0.147 Sum_probs=48.4
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEE---cCCc--EEecCEEEEccChHH
Q 009635 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 330 (530)
Q Consensus 272 ~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~---~~G~--~i~ad~VI~a~~~~~ 330 (530)
..|+..|.+.+.+.|++++.++.|+++..+++|++++|.. .+|+ .+.|+.||+||+...
T Consensus 148 ~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 211 (591)
T PRK07057 148 HALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAG 211 (591)
T ss_pred HHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcc
Confidence 5688889888888899999999999998755677888865 2453 578999999998754
No 136
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.09 E-value=5.2e-08 Score=97.43 Aligned_cols=60 Identities=27% Similarity=0.407 Sum_probs=45.5
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCcEEEEecCccc--CceeeeeecCCCCEEeeeeceecCCcchHHHHHHHcCCCC
Q 009635 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL--GGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGIND 132 (530)
Q Consensus 57 ~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~--GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~ 132 (530)
.+||+|||||++|+++|..|++.|++|+|+|+++.. .+. .|+..+ .++..++++++|+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~-------------~~a~~l---~~~~~~~L~~lGl~~ 63 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGR-------------IRAGVL---EQGTVDLLREAGVDE 63 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCc-------------eeEeeE---CHHHHHHHHHCCChH
Confidence 479999999999999999999999999999998741 111 122221 344668888999764
No 137
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.08 E-value=3.1e-09 Score=111.52 Aligned_cols=58 Identities=21% Similarity=0.166 Sum_probs=47.4
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEE---cCCc--EEecCEEEEccChHH
Q 009635 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 330 (530)
Q Consensus 272 ~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~---~~G~--~i~ad~VI~a~~~~~ 330 (530)
..+...|.+.+.+.|++|++++.|++|..+ ++++++|.. .+|+ .+.|+.||+||+...
T Consensus 129 ~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~ 191 (566)
T TIGR01812 129 HALLHTLYEQCLKLGVSFFNEYFALDLIHD-DGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYG 191 (566)
T ss_pred HHHHHHHHHHHHHcCCEEEeccEEEEEEEe-CCEEEEEEEEECCCCcEEEEECCeEEECCCccc
Confidence 467788888888889999999999999874 677777654 3564 589999999998764
No 138
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.08 E-value=2.7e-09 Score=107.35 Aligned_cols=57 Identities=28% Similarity=0.356 Sum_probs=44.8
Q ss_pred ccchHHHHHHHHHcC-cEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHH
Q 009635 272 ERLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (530)
Q Consensus 272 ~~l~~~l~~~l~~~g-~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (530)
..+.+.|.+.+.+.+ ++++.+++|+++..++++ + .|++.+|+++.||.||.|.+.+.
T Consensus 109 ~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~-v-~v~~~~g~~~~ad~vV~AdG~~S 166 (396)
T PRK08163 109 ADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDG-V-TVFDQQGNRWTGDALIGCDGVKS 166 (396)
T ss_pred HHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCc-e-EEEEcCCCEEecCEEEECCCcCh
Confidence 345667777777665 899999999999874443 3 47788888899999999998864
No 139
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.08 E-value=3.2e-09 Score=110.55 Aligned_cols=59 Identities=15% Similarity=0.147 Sum_probs=47.0
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEE---cCCc--EEecCEEEEccChHH
Q 009635 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 330 (530)
Q Consensus 272 ~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~---~~G~--~i~ad~VI~a~~~~~ 330 (530)
..++..|.+.+++.|++|++++.|++|..++++++++|.. .+|+ .|.|+.||+||+...
T Consensus 134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 197 (543)
T PRK06263 134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAG 197 (543)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCC
Confidence 4677888888888899999999999998755555777653 4564 589999999998754
No 140
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.08 E-value=4.8e-09 Score=109.24 Aligned_cols=58 Identities=17% Similarity=0.223 Sum_probs=47.0
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEc-CCc--EEecC-EEEEccChHH
Q 009635 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-NGN--VIDGD-AYVFATPVDI 330 (530)
Q Consensus 272 ~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~-~G~--~i~ad-~VI~a~~~~~ 330 (530)
..++..|.+.+++.|++|+++++|++|..+ ++++++|+.. +|+ .|.|+ .||+||+...
T Consensus 208 ~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~ 269 (557)
T PRK12844 208 AALIGRMLEAALAAGVPLWTNTPLTELIVE-DGRVVGVVVVRDGREVLIRARRGVLLASGGFG 269 (557)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCEEEEEEEEECCeEEEEEecceEEEecCCcc
Confidence 578889999999999999999999999974 6788888764 343 47785 6999997644
No 141
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.07 E-value=1.5e-09 Score=113.91 Aligned_cols=59 Identities=8% Similarity=0.111 Sum_probs=48.5
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEE---cCCc--EEecCEEEEccChHH
Q 009635 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 330 (530)
Q Consensus 272 ~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~---~~G~--~i~ad~VI~a~~~~~ 330 (530)
..++..|.+.+.+.|++|+.++.+++|..++++++++|.. .+|+ .|.|+.||+||+...
T Consensus 187 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g 250 (635)
T PLN00128 187 HAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYG 250 (635)
T ss_pred HHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCc
Confidence 5688899998888899999999999988755678888765 2453 689999999998754
No 142
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.07 E-value=3e-09 Score=109.38 Aligned_cols=58 Identities=16% Similarity=0.110 Sum_probs=46.9
Q ss_pred ccchHHHHHHHHH-cCcEEEecceeeEEEecCCCCEEEEEEcC-C--cEEecCEEEEccChHH
Q 009635 272 ERLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTN-G--NVIDGDAYVFATPVDI 330 (530)
Q Consensus 272 ~~l~~~l~~~l~~-~g~~i~~~t~V~~I~~~~~g~~~~v~~~~-G--~~i~ad~VI~a~~~~~ 330 (530)
..+...|.+.+++ .|++|++++.|++|..+ ++.+++|.+.+ + ..+.|+.||+||+.+.
T Consensus 128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~-~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~ 189 (488)
T TIGR00551 128 REVITTLVKKALNHPNIRIIEGENALDLLIE-TGRVVGVWVWNRETVETCHADAVVLATGGAG 189 (488)
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeeeeecc-CCEEEEEEEEECCcEEEEEcCEEEECCCccc
Confidence 5688889988887 58999999999999874 56676776543 3 3689999999998875
No 143
>PRK05868 hypothetical protein; Validated
Probab=99.07 E-value=2.4e-08 Score=99.09 Aligned_cols=50 Identities=6% Similarity=0.040 Sum_probs=39.1
Q ss_pred HcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChH-HHhhhC
Q 009635 284 SLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQL 335 (530)
Q Consensus 284 ~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~-~~~~ll 335 (530)
..|+++++++.|++|+.+ ++. +.|++.+|++++||.||-|-|.+ .+++.+
T Consensus 116 ~~~v~i~~~~~v~~i~~~-~~~-v~v~~~dg~~~~adlvIgADG~~S~vR~~~ 166 (372)
T PRK05868 116 QPSVEYLFDDSISTLQDD-GDS-VRVTFERAAAREFDLVIGADGLHSNVRRLV 166 (372)
T ss_pred cCCcEEEeCCEEEEEEec-CCe-EEEEECCCCeEEeCEEEECCCCCchHHHHh
Confidence 357999999999999864 333 45888899899999999999874 445554
No 144
>PLN02815 L-aspartate oxidase
Probab=99.06 E-value=2.5e-09 Score=111.31 Aligned_cols=59 Identities=8% Similarity=0.016 Sum_probs=45.3
Q ss_pred ccchHHHHHHHHHc-CcEEEecceeeEEEecCCC---CEEEEEE---cCCc--EEecCEEEEccChHH
Q 009635 272 ERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDG---TVKNFLL---TNGN--VIDGDAYVFATPVDI 330 (530)
Q Consensus 272 ~~l~~~l~~~l~~~-g~~i~~~t~V~~I~~~~~g---~~~~v~~---~~G~--~i~ad~VI~a~~~~~ 330 (530)
..++..|.+.++++ |++|++++.|++|..++++ ++++|.. .+|+ .+.|+.||+||+...
T Consensus 155 ~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g 222 (594)
T PLN02815 155 REIERALLEAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAG 222 (594)
T ss_pred HHHHHHHHHHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcce
Confidence 46788888888765 8999999999999875443 2678764 2453 578999999998754
No 145
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.06 E-value=1.3e-09 Score=110.10 Aligned_cols=44 Identities=32% Similarity=0.490 Sum_probs=40.2
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceeee
Q 009635 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (530)
Q Consensus 55 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~ 98 (530)
...++|+|||||++||+||.+|++.|++|+|+|+++.+||...-
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~ 51 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVY 51 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeec
Confidence 34679999999999999999999999999999999999997653
No 146
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.06 E-value=1.4e-09 Score=110.94 Aligned_cols=56 Identities=14% Similarity=0.197 Sum_probs=44.1
Q ss_pred cchHHHHHHHHHc-CcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHH
Q 009635 273 RLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (530)
Q Consensus 273 ~l~~~l~~~l~~~-g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (530)
.+...|.+.+.+. |++++ ++.|++|.. +++++.+|.+.+|..+.|+.||+|||.+.
T Consensus 101 ly~kaL~e~L~~~~nV~I~-q~~V~~Li~-e~grV~GV~t~dG~~I~Ak~VIlATGTFL 157 (618)
T PRK05192 101 LYRAAMREILENQPNLDLF-QGEVEDLIV-ENGRVVGVVTQDGLEFRAKAVVLTTGTFL 157 (618)
T ss_pred HHHHHHHHHHHcCCCcEEE-EeEEEEEEe-cCCEEEEEEECCCCEEECCEEEEeeCcch
Confidence 3445566666655 68874 667999987 46678889999999999999999999865
No 147
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.04 E-value=5e-09 Score=106.98 Aligned_cols=56 Identities=20% Similarity=0.269 Sum_probs=46.1
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHH
Q 009635 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (530)
Q Consensus 272 ~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (530)
..+.+.|.+.+++.|++++.+ .|+.+.. +++++++|.+ +|+.+.|+.||+||+.+.
T Consensus 120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~-~~g~v~Gv~~-~g~~i~a~~VVLATGG~~ 175 (466)
T PRK08401 120 KHIIKILYKHARELGVNFIRG-FAEELAI-KNGKAYGVFL-DGELLKFDATVIATGGFS 175 (466)
T ss_pred HHHHHHHHHHHHhcCCEEEEe-EeEEEEe-eCCEEEEEEE-CCEEEEeCeEEECCCcCc
Confidence 568889999999999999876 7988876 4667777776 566899999999998875
No 148
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.04 E-value=4.1e-09 Score=110.41 Aligned_cols=58 Identities=21% Similarity=0.302 Sum_probs=47.4
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEE---cCCc--EEecCEEEEccChHH
Q 009635 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 330 (530)
Q Consensus 272 ~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~---~~G~--~i~ad~VI~a~~~~~ 330 (530)
..++..|.+.+++.|++|++++.|++|.. +++++.++.. .+|+ .+.|+.||+||+.+.
T Consensus 135 ~~i~~~L~~~~~~~gi~i~~~t~v~~L~~-~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~ 197 (575)
T PRK05945 135 HAILHELVNNLRRYGVTIYDEWYVMRLIL-EDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYG 197 (575)
T ss_pred HHHHHHHHHHHhhCCCEEEeCcEEEEEEE-ECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCc
Confidence 57888899989888999999999999987 4677766653 3554 589999999998864
No 149
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=99.04 E-value=1.5e-08 Score=106.12 Aligned_cols=59 Identities=19% Similarity=0.174 Sum_probs=47.5
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcC-Cc--EEec-CEEEEccChHH
Q 009635 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN-GN--VIDG-DAYVFATPVDI 330 (530)
Q Consensus 271 ~~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~-G~--~i~a-d~VI~a~~~~~ 330 (530)
...++..|.+.++++|++|+++++|++|..+ ++++++|...+ |+ .+.| +.||+|++.+.
T Consensus 220 G~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~ 282 (578)
T PRK12843 220 GNALIGRLLYSLRARGVRILTQTDVESLETD-HGRVIGATVVQGGVRRRIRARGGVVLATGGFN 282 (578)
T ss_pred cHHHHHHHHHHHHhCCCEEEeCCEEEEEEee-CCEEEEEEEecCCeEEEEEccceEEECCCCcc
Confidence 3578899999999999999999999999874 67788887654 32 4776 68999997654
No 150
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.03 E-value=3.3e-09 Score=111.79 Aligned_cols=41 Identities=24% Similarity=0.234 Sum_probs=37.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCcee
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKI 96 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~ 96 (530)
.++||+|||||+|||+||..+++.|.+|+|+|+....||.+
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g~s 47 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKAHT 47 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCCcc
Confidence 46899999999999999999999999999999998766643
No 151
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.03 E-value=5.9e-09 Score=109.28 Aligned_cols=58 Identities=16% Similarity=0.151 Sum_probs=46.6
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcC--Cc-EEecC-EEEEccChHH
Q 009635 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN--GN-VIDGD-AYVFATPVDI 330 (530)
Q Consensus 272 ~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~--G~-~i~ad-~VI~a~~~~~ 330 (530)
..+++.|.+.++++|++|+++++|++|..+ ++++++|+..+ ++ .+.++ .||+|++.+.
T Consensus 214 ~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~-~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 275 (574)
T PRK12842 214 NALAARLAKSALDLGIPILTGTPARELLTE-GGRVVGARVIDAGGERRITARRGVVLACGGFS 275 (574)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEee-CCEEEEEEEEcCCceEEEEeCCEEEEcCCCcc
Confidence 568888999999999999999999999874 67777777643 32 47886 6999998654
No 152
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.03 E-value=9.2e-09 Score=107.20 Aligned_cols=44 Identities=30% Similarity=0.449 Sum_probs=40.2
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceeee
Q 009635 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (530)
Q Consensus 55 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~ 98 (530)
..++||+|||+|++|++||..+++.|.+|+|||+....||.+..
T Consensus 5 ~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~~~ 48 (557)
T PRK07843 5 VQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTAR 48 (557)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCccccc
Confidence 35789999999999999999999999999999999988887654
No 153
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.01 E-value=1e-08 Score=107.36 Aligned_cols=59 Identities=15% Similarity=0.143 Sum_probs=45.5
Q ss_pred ccchHHHHHHHHHcC----cEEEecceeeEEEecCCCCEEEEEEc---CCc--EEecCEEEEccChHH
Q 009635 272 ERLCLPIVEHIQSLG----GEVRLNSRVQKIELNDDGTVKNFLLT---NGN--VIDGDAYVFATPVDI 330 (530)
Q Consensus 272 ~~l~~~l~~~l~~~g----~~i~~~t~V~~I~~~~~g~~~~v~~~---~G~--~i~ad~VI~a~~~~~ 330 (530)
..++..|.+.+.+.+ ++++.++.|+++..+++|++++|... .|+ .+.|+.||+||+...
T Consensus 133 ~~i~~~L~~~~~~~~~~~~i~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 200 (589)
T PRK08641 133 QQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDEGVCRGIVAQDLFTMEIESFPADAVIMATGGPG 200 (589)
T ss_pred HHHHHHHHHHHHhhhccCCcEEEeeEEEEEEEECCCCEEEEEEEEECCCCcEEEEECCEEEECCCCCc
Confidence 567778877776543 78999999999987557888888764 343 478999999998755
No 154
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=99.01 E-value=2.2e-09 Score=105.12 Aligned_cols=63 Identities=21% Similarity=0.229 Sum_probs=52.3
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCC--cEEecCEEEEccChHHHhhhC
Q 009635 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG--NVIDGDAYVFATPVDILKLQL 335 (530)
Q Consensus 272 ~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G--~~i~ad~VI~a~~~~~~~~ll 335 (530)
.++.++|.+.++++|++|+.+++|+++..+ +++++.|.+.++ .++.||+||+|+++|....|+
T Consensus 263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~-~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~ 327 (419)
T TIGR03378 263 IRLEEALKHRFEQLGGVMLPGDRVLRAEFE-GNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLV 327 (419)
T ss_pred HHHHHHHHHHHHHCCCEEEECcEEEEEEee-CCeEEEEEecCCccceEECCEEEEccCCCcCHHHH
Confidence 578888999999999999999999999874 566767877776 479999999999999435554
No 155
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=99.01 E-value=1.4e-08 Score=104.98 Aligned_cols=42 Identities=36% Similarity=0.558 Sum_probs=38.5
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceee
Q 009635 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (530)
Q Consensus 55 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~ 97 (530)
+.++|||||||| +||+||+++++.|.+|+|||+....||.+.
T Consensus 5 d~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t~ 46 (513)
T PRK12837 5 DEEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTTA 46 (513)
T ss_pred CCccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCccee
Confidence 458899999999 999999999999999999999998888654
No 156
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.01 E-value=4.6e-09 Score=110.06 Aligned_cols=59 Identities=19% Similarity=0.152 Sum_probs=48.2
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCC---CCEEEEEE---cCCc--EEecCEEEEccChHH
Q 009635 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDD---GTVKNFLL---TNGN--VIDGDAYVFATPVDI 330 (530)
Q Consensus 272 ~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~---g~~~~v~~---~~G~--~i~ad~VI~a~~~~~ 330 (530)
..++..|.+.+.+.|++|++++.|++|..+++ |++++|.. .+|+ .+.|+.||+||+...
T Consensus 140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence 56888899989889999999999999987542 78888864 3554 588999999998764
No 157
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.01 E-value=5.2e-08 Score=96.67 Aligned_cols=55 Identities=31% Similarity=0.391 Sum_probs=42.0
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHH
Q 009635 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (530)
Q Consensus 273 ~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (530)
.|-+.+.+.+. .++.+.+++.|++|+..+++ ..|++.+|++++|+.||-|.|...
T Consensus 88 ~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~~--~~v~~~~g~~i~a~~VvDa~g~~~ 142 (374)
T PF05834_consen 88 DFYEFLLERAA-AGGVIRLNARVTSIEETGDG--VLVVLADGRTIRARVVVDARGPSS 142 (374)
T ss_pred HHHHHHHHHhh-hCCeEEEccEEEEEEecCce--EEEEECCCCEEEeeEEEECCCccc
Confidence 44455677776 45677889999999975443 358899998999999999998554
No 158
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.00 E-value=1.8e-09 Score=113.93 Aligned_cols=58 Identities=14% Similarity=0.050 Sum_probs=46.6
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEE---cCCc--EEecCEEEEccChHH
Q 009635 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 330 (530)
Q Consensus 272 ~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~---~~G~--~i~ad~VI~a~~~~~ 330 (530)
..+...|.+.+.+.|++|+.++.|++|.. +++++++|.. .+|+ .+.|+.||+||+.+.
T Consensus 158 ~~l~~~L~~~~~~~gv~i~~~~~~~~Li~-~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g 220 (657)
T PRK08626 158 HTMLYAVDNEAIKLGVPVHDRKEAIALIH-DGKRCYGAVVRCLITGELRAYVAKATLIATGGYG 220 (657)
T ss_pred HHHHHHHHHHHHhCCCEEEeeEEEEEEEE-ECCEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence 45777888888889999999999999997 4677777664 3564 467999999998765
No 159
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=99.00 E-value=3.9e-09 Score=107.11 Aligned_cols=59 Identities=25% Similarity=0.236 Sum_probs=48.5
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecC-CCCEEEEEEcC-CcEEecCEEEEccChH
Q 009635 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELND-DGTVKNFLLTN-GNVIDGDAYVFATPVD 329 (530)
Q Consensus 271 ~~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~-~g~~~~v~~~~-G~~i~ad~VI~a~~~~ 329 (530)
...+++.|.+.+++.|++|+++++|++|..++ ++++++|.+.+ +.++.|+.||+|++..
T Consensus 122 g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~ 182 (432)
T TIGR02485 122 GKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGL 182 (432)
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCc
Confidence 35788999999999999999999999998753 57777776543 3589999999999853
No 160
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.00 E-value=9.2e-09 Score=107.30 Aligned_cols=42 Identities=48% Similarity=0.718 Sum_probs=38.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCc--ccCceee
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD--VLGGKIA 97 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~--~~GG~~~ 97 (530)
.++||||||+|.+||+||..+++.|.+|+||||.. ..||.+.
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~ 46 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAF 46 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCcee
Confidence 56899999999999999999999999999999999 7888764
No 161
>PRK07538 hypothetical protein; Provisional
Probab=99.00 E-value=2.6e-07 Score=93.34 Aligned_cols=35 Identities=40% Similarity=0.605 Sum_probs=32.6
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCcEEEEecCccc
Q 009635 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~ 92 (530)
+||+|||||++||++|..|++.|++|+|+|++..+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 35 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL 35 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcc
Confidence 58999999999999999999999999999998653
No 162
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.97 E-value=7e-10 Score=111.90 Aligned_cols=59 Identities=22% Similarity=0.251 Sum_probs=0.0
Q ss_pred HHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcC---CcEEecCEEEEccChHHHhhhCCc
Q 009635 278 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN---GNVIDGDAYVFATPVDILKLQLPE 337 (530)
Q Consensus 278 l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~---G~~i~ad~VI~a~~~~~~~~ll~~ 337 (530)
+.+.+.+.|++|++++.|.++.. +++++++|++.+ ..+|+|+.||-||+-..+..+...
T Consensus 96 l~~~l~e~gv~v~~~t~v~~v~~-~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~g~l~~~aG~ 157 (428)
T PF12831_consen 96 LDEMLAEAGVEVLLGTRVVDVIR-DGGRITGVIVETKSGRKEIRAKVFIDATGDGDLAALAGA 157 (428)
T ss_dssp ---------------------------------------------------------------
T ss_pred ccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccc
Confidence 44445667999999999999998 467788888764 357999999999997666666443
No 163
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.97 E-value=1.1e-08 Score=107.38 Aligned_cols=58 Identities=14% Similarity=0.051 Sum_probs=45.8
Q ss_pred ccchHHHHHHHHH-cCcEEEecceeeEEEecCCCCEEEEEE---cCCc--EEecCEEEEccChHH
Q 009635 272 ERLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 330 (530)
Q Consensus 272 ~~l~~~l~~~l~~-~g~~i~~~t~V~~I~~~~~g~~~~v~~---~~G~--~i~ad~VI~a~~~~~ 330 (530)
..+++.|.+.+.+ .|++|+.++.|++|.. +++++++|.. .+|+ .+.|+.||+||+...
T Consensus 137 ~~i~~~L~~~~~~~~gv~i~~~~~v~~Li~-~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (577)
T PRK06069 137 FYIMHTLYSRALRFDNIHFYDEHFVTSLIV-ENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGAG 200 (577)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCEEEEEEE-ECCEEEEEEEEEcCCCeEEEEECCcEEEcCchhc
Confidence 4678888888876 5899999999999987 4677777653 3564 589999999998864
No 164
>PRK07236 hypothetical protein; Provisional
Probab=98.97 E-value=5.9e-09 Score=104.38 Aligned_cols=62 Identities=24% Similarity=0.278 Sum_probs=45.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceeeeeecCCCCEEeeeeceecCCcchHHHHHHHcCCCC
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGIND 132 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~ 132 (530)
...||+|||||++||++|..|++.|++|+|+|+++..-. . .|..+ ...++..++++++|+..
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~---~----------~g~gi--~l~~~~~~~l~~lg~~~ 66 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELD---G----------RGAGI--VLQPELLRALAEAGVAL 66 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcC---C----------CCcee--EeCHHHHHHHHHcCCCc
Confidence 357999999999999999999999999999999864210 0 11100 01356778889998864
No 165
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.96 E-value=9.2e-09 Score=106.02 Aligned_cols=57 Identities=16% Similarity=0.113 Sum_probs=44.5
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcC--Cc--EEecCEEEEccChHH
Q 009635 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN--GN--VIDGDAYVFATPVDI 330 (530)
Q Consensus 272 ~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~--G~--~i~ad~VI~a~~~~~ 330 (530)
..+++.|.+.+. .|++|+.++.|++|.. +++++.+|.+.+ |+ .+.|+.||+||+.+.
T Consensus 130 ~~i~~~L~~~~~-~gV~i~~~~~v~~Li~-~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~ 190 (510)
T PRK08071 130 KNLLEHLLQELV-PHVTVVEQEMVIDLII-ENGRCIGVLTKDSEGKLKRYYADYVVLASGGCG 190 (510)
T ss_pred HHHHHHHHHHHh-cCCEEEECeEhhheee-cCCEEEEEEEEECCCcEEEEEcCeEEEecCCCc
Confidence 457777877765 5899999999999987 467777777543 33 689999999998754
No 166
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.96 E-value=8.6e-09 Score=104.31 Aligned_cols=58 Identities=24% Similarity=0.367 Sum_probs=46.6
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHH
Q 009635 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (530)
Q Consensus 272 ~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (530)
..+-+-|.+.+.++|+++..++ |.++..+++|.+..|++.+|++++||.||=|+|...
T Consensus 154 ~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s 211 (454)
T PF04820_consen 154 AKFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRS 211 (454)
T ss_dssp HHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-
T ss_pred HHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccc
Confidence 4667778888899999998875 888888788888899999999999999999999754
No 167
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.96 E-value=1.2e-08 Score=106.98 Aligned_cols=59 Identities=17% Similarity=0.124 Sum_probs=44.7
Q ss_pred ccchHHHHHHHHHc----CcEEEecceeeEEEecCCCCEEEEEEc---CCc--EEecCEEEEccChHH
Q 009635 272 ERLCLPIVEHIQSL----GGEVRLNSRVQKIELNDDGTVKNFLLT---NGN--VIDGDAYVFATPVDI 330 (530)
Q Consensus 272 ~~l~~~l~~~l~~~----g~~i~~~t~V~~I~~~~~g~~~~v~~~---~G~--~i~ad~VI~a~~~~~ 330 (530)
..++..|.+.+++. |++|++++.|++|..++++++++|... +|+ .+.|+.||+||+...
T Consensus 129 ~~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG~g 196 (603)
T TIGR01811 129 QQLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGGYG 196 (603)
T ss_pred hHHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCc
Confidence 45666666665443 799999999999987656788888754 353 589999999998753
No 168
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.96 E-value=1.4e-08 Score=106.29 Aligned_cols=58 Identities=21% Similarity=0.149 Sum_probs=45.3
Q ss_pred ccchHHHHHHHHHc-CcEEEecceeeEEEecCCCCEEEEEE---cCCc--EEecCEEEEccChHH
Q 009635 272 ERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 330 (530)
Q Consensus 272 ~~l~~~l~~~l~~~-g~~i~~~t~V~~I~~~~~g~~~~v~~---~~G~--~i~ad~VI~a~~~~~ 330 (530)
..+...|.+.+.+. +++++.++.|++|.. +++++++|.. .+|+ .+.|+.||+||+...
T Consensus 133 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~-~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 196 (582)
T PRK09231 133 FHMLHTLFQTSLKYPQIQRFDEHFVLDILV-DDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAG 196 (582)
T ss_pred HHHHHHHHHHhhcCCCcEEEeCeEEEEEEE-eCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCc
Confidence 46777888877765 799999999999987 4677777643 4563 689999999998754
No 169
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.95 E-value=1.5e-08 Score=105.73 Aligned_cols=58 Identities=19% Similarity=0.079 Sum_probs=46.1
Q ss_pred ccchHHHHHHHHHc-CcEEEecceeeEEEecCCCCEEEEEE---cCC--cEEecCEEEEccChHH
Q 009635 272 ERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLL---TNG--NVIDGDAYVFATPVDI 330 (530)
Q Consensus 272 ~~l~~~l~~~l~~~-g~~i~~~t~V~~I~~~~~g~~~~v~~---~~G--~~i~ad~VI~a~~~~~ 330 (530)
..|+..|.+.+.+. +++++.++.|++|..+ ++++++|.. .+| ..+.|+.||+||+...
T Consensus 132 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 195 (580)
T TIGR01176 132 FHMLHTLFQTSLTYPQIMRYDEWFVTDLLVD-DGRVCGLVAIEMAEGRLVTILADAVVLATGGAG 195 (580)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEEEEEEee-CCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCc
Confidence 56888888887764 7999999999999874 677777653 356 3689999999998754
No 170
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.95 E-value=3.1e-09 Score=108.96 Aligned_cols=60 Identities=25% Similarity=0.335 Sum_probs=46.9
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHHHhh
Q 009635 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL 333 (530)
Q Consensus 272 ~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~~~~ 333 (530)
..+...+.+.++++|+++++++.|++|..++++ +.+++.+|+++.+|.||+|++...-..
T Consensus 216 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~--~~v~~~~g~~i~~D~vi~a~G~~p~~~ 275 (461)
T PRK05249 216 DEISDALSYHLRDSGVTIRHNEEVEKVEGGDDG--VIVHLKSGKKIKADCLLYANGRTGNTD 275 (461)
T ss_pred HHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCe--EEEEECCCCEEEeCEEEEeecCCcccc
Confidence 345677888888899999999999999864343 246677788899999999998754333
No 171
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=98.95 E-value=3.1e-08 Score=98.97 Aligned_cols=57 Identities=23% Similarity=0.391 Sum_probs=50.2
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHH
Q 009635 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (530)
Q Consensus 271 ~~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (530)
+.+++..|.+.+.+ |++|+.+++|++|+.+ ++. +.|+|.+|+++.||+||+|+++|+
T Consensus 134 p~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~-~~~-~~v~t~~g~~~~a~~vV~a~G~~~ 190 (381)
T TIGR03197 134 PPQLCRALLAHAGI-RLTLHFNTEITSLERD-GEG-WQLLDANGEVIAASVVVLANGAQA 190 (381)
T ss_pred hHHHHHHHHhccCC-CcEEEeCCEEEEEEEc-CCe-EEEEeCCCCEEEcCEEEEcCCccc
Confidence 78999999999998 9999999999999874 343 468888997799999999999997
No 172
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.93 E-value=8.1e-09 Score=116.09 Aligned_cols=43 Identities=44% Similarity=0.645 Sum_probs=39.7
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceee
Q 009635 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (530)
Q Consensus 55 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~ 97 (530)
..++||||||+|.||++||..+++.|.+|+||||....||.+.
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~ 449 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSA 449 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchh
Confidence 4568999999999999999999999999999999999999754
No 173
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.93 E-value=2.5e-08 Score=104.86 Aligned_cols=58 Identities=14% Similarity=0.119 Sum_probs=45.0
Q ss_pred ccchHHHHHHHHHcC-cEEEecceeeEEEecCCCCEEEEE---EcCCc--EEecCEEEEccChHH
Q 009635 272 ERLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFL---LTNGN--VIDGDAYVFATPVDI 330 (530)
Q Consensus 272 ~~l~~~l~~~l~~~g-~~i~~~t~V~~I~~~~~g~~~~v~---~~~G~--~i~ad~VI~a~~~~~ 330 (530)
..+...|.+.++++| ++|+.++.|++|..+ ++++++|. +.+|+ .+.|+.||+||+.+.
T Consensus 132 ~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 195 (608)
T PRK06854 132 ESYKPIVAEAAKKALGDNVLNRVFITDLLVD-DNRIAGAVGFSVRENKFYVFKAKAVIVATGGAA 195 (608)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCEEEEEEEe-CCEEEEEEEEEccCCcEEEEECCEEEECCCchh
Confidence 456777888887776 999999999999864 56676764 23453 689999999999765
No 174
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.92 E-value=2.6e-08 Score=85.48 Aligned_cols=50 Identities=30% Similarity=0.426 Sum_probs=36.4
Q ss_pred HHHHHHHHHcCcEEE-ecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCh
Q 009635 276 LPIVEHIQSLGGEVR-LNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 328 (530)
Q Consensus 276 ~~l~~~l~~~g~~i~-~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~ 328 (530)
+.+.+.+ ..|++|. .+.+|+.|...+++. .|.+.+|..+.||+||+|++.
T Consensus 105 ~~~~~~~-~~~i~v~~~~~~V~~i~~~~~~~--~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 105 DRLLARL-PAGITVRHVRAEVVDIRRDDDGY--RVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred HHHHHhh-cCCcEEEEEeeEEEEEEEcCCcE--EEEECCCCEEEeCEEEECCCC
Confidence 3344444 3455443 567899999866663 588899999999999999974
No 175
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.92 E-value=5.7e-09 Score=103.58 Aligned_cols=62 Identities=21% Similarity=0.210 Sum_probs=47.7
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCc--EEecCEEEEccChHHHhhh
Q 009635 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGN--VIDGDAYVFATPVDILKLQ 334 (530)
Q Consensus 272 ~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~--~i~ad~VI~a~~~~~~~~l 334 (530)
.++.+.|.+.++++|++|+++++|+++..+ ++.+..+.+.+|+ .+.||.||+|++...-..|
T Consensus 259 ~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~-~~~V~~v~~~~g~~~~i~AD~VVLAtGrf~s~GL 322 (422)
T PRK05329 259 LRLQNALRRAFERLGGRIMPGDEVLGAEFE-GGRVTAVWTRNHGDIPLRARHFVLATGSFFSGGL 322 (422)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCEEEEEEeeCCceEEEECCEEEEeCCCcccCce
Confidence 367788899998999999999999999874 4455555555553 5899999999997653333
No 176
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.92 E-value=9.6e-09 Score=99.21 Aligned_cols=38 Identities=45% Similarity=0.717 Sum_probs=34.4
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCcee
Q 009635 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKI 96 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~ 96 (530)
+||+|||||++||+||..|++.|++|+|+|+++ .||.+
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~ 38 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQL 38 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcce
Confidence 699999999999999999999999999999876 66644
No 177
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.90 E-value=1.8e-08 Score=104.02 Aligned_cols=59 Identities=20% Similarity=0.254 Sum_probs=46.8
Q ss_pred CccchHHHHHHHHHc-CcEEEecceeeEEEecCCCCEEEEEEcC-Cc--EEecCEEEEccChHH
Q 009635 271 PERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTN-GN--VIDGDAYVFATPVDI 330 (530)
Q Consensus 271 ~~~l~~~l~~~l~~~-g~~i~~~t~V~~I~~~~~g~~~~v~~~~-G~--~i~ad~VI~a~~~~~ 330 (530)
...+++.|.+.+.+. |++|+.++.|++|.. +++++++|.+.+ ++ ++.|+.||+||+...
T Consensus 135 G~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~-~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~ 197 (513)
T PRK07512 135 GAAIMRALIAAVRATPSITVLEGAEARRLLV-DDGAVAGVLAATAGGPVVLPARAVVLATGGIG 197 (513)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECcChhheee-cCCEEEEEEEEeCCeEEEEECCEEEEcCCCCc
Confidence 356888898888775 899999999999986 467777777543 32 589999999998754
No 178
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.89 E-value=1.1e-08 Score=103.18 Aligned_cols=46 Identities=35% Similarity=0.455 Sum_probs=41.4
Q ss_pred CCCCCCeEEEECCChHHHHHHHHHHHCCCc-EEEEecCcccCceeee
Q 009635 53 RPSKPLKVVIAGAGLAGLSTAKYLADAGHK-PLLLEARDVLGGKIAA 98 (530)
Q Consensus 53 ~~~~~~dVvIIGaG~aGl~aA~~L~~~G~~-V~vlEa~~~~GG~~~~ 98 (530)
...+.+||+|||||++||++|++|.++|.. ++||||++.+||.-..
T Consensus 4 ~~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~ 50 (443)
T COG2072 4 GVATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRY 50 (443)
T ss_pred CcCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchh
Confidence 345788999999999999999999999998 9999999999997554
No 179
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.89 E-value=5.8e-08 Score=107.76 Aligned_cols=43 Identities=33% Similarity=0.520 Sum_probs=40.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceeee
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~ 98 (530)
..+||+|||||++||+||..|++.|++|+|+|+...+||.+..
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~ 204 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLS 204 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeec
Confidence 3579999999999999999999999999999999999998865
No 180
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.89 E-value=7.8e-07 Score=85.60 Aligned_cols=59 Identities=36% Similarity=0.501 Sum_probs=51.2
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHH
Q 009635 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (530)
Q Consensus 271 ~~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (530)
...++..+.+.+++.|++|+++|.|..|+.. ++.+..|.+.+|+++.+|+||+|.+-..
T Consensus 172 l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~-~~~~~~v~~~~g~~i~~~~vvlA~Grsg 230 (486)
T COG2509 172 LPKVVKNIREYLESLGGEIRFNTEVEDIEIE-DNEVLGVKLTKGEEIEADYVVLAPGRSG 230 (486)
T ss_pred hHHHHHHHHHHHHhcCcEEEeeeEEEEEEec-CCceEEEEccCCcEEecCEEEEccCcch
Confidence 3577889999999999999999999999984 5556679999999999999999997644
No 181
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.89 E-value=2.7e-08 Score=103.28 Aligned_cols=59 Identities=15% Similarity=0.063 Sum_probs=45.5
Q ss_pred ccchHHHHHHHHHc-CcEEEecceeeEEEecC-----CCCEEEEEEc---CCc--EEecCEEEEccChHH
Q 009635 272 ERLCLPIVEHIQSL-GGEVRLNSRVQKIELND-----DGTVKNFLLT---NGN--VIDGDAYVFATPVDI 330 (530)
Q Consensus 272 ~~l~~~l~~~l~~~-g~~i~~~t~V~~I~~~~-----~g~~~~v~~~---~G~--~i~ad~VI~a~~~~~ 330 (530)
..+...|.+.+.++ |++|++++.|+++..++ ++++++|... +|+ .|.|+.||+||+...
T Consensus 138 ~~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~ 207 (536)
T PRK09077 138 KAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGAS 207 (536)
T ss_pred HHHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCC
Confidence 45777788877765 79999999999998643 3778887753 353 589999999998764
No 182
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.89 E-value=3.1e-07 Score=95.73 Aligned_cols=36 Identities=31% Similarity=0.435 Sum_probs=33.6
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCc
Q 009635 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (530)
Q Consensus 55 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~ 90 (530)
.+..+|+|||||++||++|..|++.|++|+|+|+..
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 466899999999999999999999999999999974
No 183
>PRK12831 putative oxidoreductase; Provisional
Probab=98.88 E-value=6.4e-08 Score=98.58 Aligned_cols=44 Identities=36% Similarity=0.454 Sum_probs=40.5
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceee
Q 009635 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (530)
Q Consensus 54 ~~~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~ 97 (530)
.+..+||+|||||++||+||+.|++.|++|+|+|+++.+||.+.
T Consensus 137 ~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 180 (464)
T PRK12831 137 EKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV 180 (464)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeee
Confidence 34678999999999999999999999999999999999999874
No 184
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.88 E-value=1.8e-08 Score=97.53 Aligned_cols=56 Identities=23% Similarity=0.368 Sum_probs=42.8
Q ss_pred cchHHHHHHHHHc-CcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHH
Q 009635 273 RLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (530)
Q Consensus 273 ~l~~~l~~~l~~~-g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (530)
.+-..+.+.++++ +++|. ++.|++|.. +++++.+|.+.+|+.+.||.||+||+.+.
T Consensus 96 ~y~~~~~~~l~~~~nl~i~-~~~V~~l~~-e~~~v~GV~~~~g~~~~a~~vVlaTGtfl 152 (392)
T PF01134_consen 96 KYSRAMREKLESHPNLTII-QGEVTDLIV-ENGKVKGVVTKDGEEIEADAVVLATGTFL 152 (392)
T ss_dssp HHHHHHHHHHHTSTTEEEE-ES-EEEEEE-CTTEEEEEEETTSEEEEECEEEE-TTTGB
T ss_pred HHHHHHHHHHhcCCCeEEE-EcccceEEe-cCCeEEEEEeCCCCEEecCEEEEeccccc
Confidence 3344566666663 57875 678999988 57889999999999999999999999844
No 185
>PRK08275 putative oxidoreductase; Provisional
Probab=98.87 E-value=5.2e-08 Score=101.73 Aligned_cols=59 Identities=14% Similarity=0.133 Sum_probs=48.0
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEE---cCCc--EEecCEEEEccChHH
Q 009635 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 330 (530)
Q Consensus 272 ~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~---~~G~--~i~ad~VI~a~~~~~ 330 (530)
..+.+.|.+.+++.|++|++++.|++|..++++++.+|.. .+|+ .+.|+.||+||+...
T Consensus 137 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (554)
T PRK08275 137 HDIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAG 200 (554)
T ss_pred HHHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence 4678889998988899999999999998754677777763 3564 489999999998864
No 186
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.87 E-value=4.6e-09 Score=101.98 Aligned_cols=154 Identities=19% Similarity=0.154 Sum_probs=89.2
Q ss_pred EEeecCC-CCccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcC---Cc--EEecCEEEEccChHH--Hhhh
Q 009635 263 MAFLDGN-PPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN---GN--VIDGDAYVFATPVDI--LKLQ 334 (530)
Q Consensus 263 ~~~~~gg-~~~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~---G~--~i~ad~VI~a~~~~~--~~~l 334 (530)
+.|.+|. +-.++.-.++=.+..+|..+..+.+|.++.+++++++.++...| |+ +|+|+.||.||++.+ ++++
T Consensus 214 ~VYyDGQ~nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsDsIr~M 293 (680)
T KOG0042|consen 214 MVYYDGQHNDARMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGPFSDSIRKM 293 (680)
T ss_pred EEEecCCCchHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCccHHHHhh
Confidence 3444442 34677778888888899999999999999988888777777654 43 589999999998754 3444
Q ss_pred CCccccccHHHHHHhccCCccEEEEEEEeccccccccCccccc-cCCcceeeeccCcccccccCCCccEEEEEeeCc-cc
Q 009635 335 LPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTYDHLLFS-RSSLLSVYADMSLTCKEYYNPNQSMLELVFAPA-EE 412 (530)
Q Consensus 335 l~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~~~~v~~~~~~~~-~~ 412 (530)
-.+... ---.+...+++.+++-+-+..-+++.+ .+.-..+|+- || .+.++..++-.+. -.
T Consensus 294 dd~~~~----------~i~~pSsGvHIVlP~yY~P~~mGlldP~TsDgRViFfl-----PW---qg~TIaGTTD~pt~v~ 355 (680)
T KOG0042|consen 294 DDEDAK----------PICVPSSGVHIVLPGYYCPENMGLLDPKTSDGRVIFFL-----PW---QGKTIAGTTDIPTSVT 355 (680)
T ss_pred cccccC----------ceeccCCceeEEcccccCCcccccccCCCCCCcEEEEe-----cc---CCceeeccCCCCCCCC
Confidence 333211 112355667788776553222222222 1222222221 11 1233333322221 11
Q ss_pred cCCCChhHHHHHHHHHHHHhCC
Q 009635 413 WISCSDSEIIDATMKELAKLFP 434 (530)
Q Consensus 413 ~~~~~~e~~~~~~~~~l~~~~p 434 (530)
....+-|+-++.++++++..+-
T Consensus 356 ~~P~PtE~dIqfIL~ev~~yl~ 377 (680)
T KOG0042|consen 356 HSPTPTEDDIQFILKEVQHYLS 377 (680)
T ss_pred CCCCCCHHHHHHHHHHHHHhhC
Confidence 2234457778888999988763
No 187
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.86 E-value=6.2e-09 Score=100.69 Aligned_cols=63 Identities=24% Similarity=0.230 Sum_probs=51.4
Q ss_pred CccchHHHHHHHHHc-CcEEEecceeeEEEecCCCCEEEEEEc-----CCcEEecCEEEEccChHHHhhh
Q 009635 271 PERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLT-----NGNVIDGDAYVFATPVDILKLQ 334 (530)
Q Consensus 271 ~~~l~~~l~~~l~~~-g~~i~~~t~V~~I~~~~~g~~~~v~~~-----~G~~i~ad~VI~a~~~~~~~~l 334 (530)
+..|.+.|.+.+.++ |++++++++|++|.+.++|.. .|.+. +..+++|+.|++..+.+++.-+
T Consensus 180 FG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W-~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LL 248 (488)
T PF06039_consen 180 FGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRW-EVKVKDLKTGEKREVRAKFVFVGAGGGALPLL 248 (488)
T ss_pred HHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCE-EEEEEecCCCCeEEEECCEEEECCchHhHHHH
Confidence 578999999999888 899999999999999877742 34432 3358999999999999885554
No 188
>PRK06116 glutathione reductase; Validated
Probab=98.86 E-value=3.5e-08 Score=100.84 Aligned_cols=57 Identities=21% Similarity=0.370 Sum_probs=46.1
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHH
Q 009635 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (530)
Q Consensus 273 ~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (530)
.+.+.+.+.++++|+++++++.|++|..++++.+ .|++.+|+++.+|.||+|++...
T Consensus 209 ~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~-~v~~~~g~~i~~D~Vv~a~G~~p 265 (450)
T PRK06116 209 DIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSL-TLTLEDGETLTVDCLIWAIGREP 265 (450)
T ss_pred HHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceE-EEEEcCCcEEEeCEEEEeeCCCc
Confidence 4556778888899999999999999987545433 47778888899999999998643
No 189
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.85 E-value=1.8e-08 Score=103.44 Aligned_cols=41 Identities=34% Similarity=0.469 Sum_probs=38.0
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceeee
Q 009635 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (530)
Q Consensus 57 ~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~ 98 (530)
++||+|||||++|++||+.|++.|++|+|+|+ +.+||.+..
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~ 41 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLN 41 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceee
Confidence 47999999999999999999999999999999 888998764
No 190
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.85 E-value=4.1e-08 Score=99.92 Aligned_cols=60 Identities=20% Similarity=0.184 Sum_probs=45.9
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCC-cEEecCEEEEccChHHHhh
Q 009635 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-NVIDGDAYVFATPVDILKL 333 (530)
Q Consensus 273 ~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G-~~i~ad~VI~a~~~~~~~~ 333 (530)
.+.+.+.+.++++|+++++++.|++|..++++. ..|++.+| +++.+|.||+|++...-..
T Consensus 208 ~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~-~~v~~~~g~~~i~~D~vi~a~G~~pn~~ 268 (450)
T TIGR01421 208 MISETITEEYEKEGINVHKLSKPVKVEKTVEGK-LVIHFEDGKSIDDVDELIWAIGRKPNTK 268 (450)
T ss_pred HHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCce-EEEEECCCcEEEEcCEEEEeeCCCcCcc
Confidence 455677788888999999999999998643442 34667677 5799999999998754333
No 191
>PRK06753 hypothetical protein; Provisional
Probab=98.84 E-value=1.2e-08 Score=101.69 Aligned_cols=36 Identities=33% Similarity=0.666 Sum_probs=33.3
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccC
Q 009635 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLG 93 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~G 93 (530)
+||+|||||++||++|..|++.|++|+|+|+++.+.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~ 36 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVK 36 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccc
Confidence 489999999999999999999999999999987643
No 192
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.84 E-value=1.4e-08 Score=104.18 Aligned_cols=42 Identities=31% Similarity=0.423 Sum_probs=38.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceeee
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~ 98 (530)
..+||+|||||++|++||..|++.|++|+|+|+.. +||.+..
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~ 44 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLN 44 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceee
Confidence 56899999999999999999999999999999977 8987654
No 193
>PTZ00367 squalene epoxidase; Provisional
Probab=98.84 E-value=7.4e-07 Score=92.30 Aligned_cols=64 Identities=30% Similarity=0.325 Sum_probs=46.6
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceeeeeecCCCCEEeeeeceecCCcchHHHHHHHcCCCC
Q 009635 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGIND 132 (530)
Q Consensus 54 ~~~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~ 132 (530)
...++||+|||||++|+++|+.|+++|++|+|+|+..... ..+ . .|. ...++..+.++++|+.+
T Consensus 30 ~~~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~~--~~r---~------~G~----~L~p~g~~~L~~LGL~d 93 (567)
T PTZ00367 30 TNYDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSK--PDR---I------VGE----LLQPGGVNALKELGMEE 93 (567)
T ss_pred cccCccEEEECCCHHHHHHHHHHHhcCCEEEEEccccccc--cch---h------hhh----hcCHHHHHHHHHCCChh
Confidence 3467899999999999999999999999999999874200 000 0 111 12455678889999864
No 194
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.83 E-value=1.8e-08 Score=104.30 Aligned_cols=52 Identities=27% Similarity=0.317 Sum_probs=40.6
Q ss_pred HHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHH
Q 009635 277 PIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (530)
Q Consensus 277 ~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (530)
.+.+.+++.|++++++++|++|..+++. ..|++.+|+++.+|+||+|++...
T Consensus 272 ~l~~~l~~~gv~i~~~~~V~~I~~~~~~--~~v~~~~g~~i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 272 NLEEHIKQYPIDLMENQRAKKIETEDGL--IVVTLESGEVLKAKSVIVATGARW 323 (515)
T ss_pred HHHHHHHHhCCeEEcCCEEEEEEecCCe--EEEEECCCCEEEeCEEEECCCCCc
Confidence 3555566678999999999999874333 357778888899999999999853
No 195
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.83 E-value=3e-08 Score=90.24 Aligned_cols=40 Identities=38% Similarity=0.605 Sum_probs=36.7
Q ss_pred eEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceeee
Q 009635 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (530)
Q Consensus 59 dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~ 98 (530)
-|||||+|.+||+|+..|...|-.|++||+...+||..--
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiK 50 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIK 50 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCccee
Confidence 5999999999999999999998889999999999997643
No 196
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.82 E-value=2.2e-08 Score=103.75 Aligned_cols=52 Identities=21% Similarity=0.274 Sum_probs=41.0
Q ss_pred HHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHH
Q 009635 277 PIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (530)
Q Consensus 277 ~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (530)
.+.+.+++.|+++++++.|++|...++. ..|.+.+|+++.||.||+|||...
T Consensus 271 ~l~~~~~~~gv~i~~~~~V~~I~~~~~~--~~V~~~~g~~i~a~~vViAtG~~~ 322 (517)
T PRK15317 271 ALEEHVKEYDVDIMNLQRASKLEPAAGL--IEVELANGAVLKAKTVILATGARW 322 (517)
T ss_pred HHHHHHHHCCCEEEcCCEEEEEEecCCe--EEEEECCCCEEEcCEEEECCCCCc
Confidence 3555666778999999999999874333 357788888899999999999853
No 197
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.82 E-value=3.4e-08 Score=100.80 Aligned_cols=59 Identities=12% Similarity=0.137 Sum_probs=45.6
Q ss_pred ccchHHHHHHHHHc-CcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHHH
Q 009635 272 ERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDIL 331 (530)
Q Consensus 272 ~~l~~~l~~~l~~~-g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~~ 331 (530)
..+...|.+.+++. |++++. ..|+++..++++.+.+|.+.+|..+.|+.||+|||.+.-
T Consensus 96 ~~y~~~L~e~Le~~pgV~Ile-~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL~ 155 (617)
T TIGR00136 96 VLYRKAMRNALENQPNLSLFQ-GEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFLR 155 (617)
T ss_pred HHHHHHHHHHHHcCCCcEEEE-eEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCcccC
Confidence 34555677777776 577764 468888764467788999999989999999999999963
No 198
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.82 E-value=2.4e-07 Score=88.13 Aligned_cols=38 Identities=42% Similarity=0.579 Sum_probs=34.1
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCc
Q 009635 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGG 94 (530)
Q Consensus 57 ~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG 94 (530)
+.+|||||||++||++|..|.+.|++|+|+|++..+-|
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~ 39 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRG 39 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccccc
Confidence 46899999999999999999999999999999865433
No 199
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.82 E-value=2e-07 Score=94.80 Aligned_cols=43 Identities=44% Similarity=0.566 Sum_probs=39.7
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceee
Q 009635 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (530)
Q Consensus 55 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~ 97 (530)
...+||+|||||++||++|+.|++.|++|+|+|+++.+||.+.
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 173 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVT 173 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEee
Confidence 4568999999999999999999999999999999999998764
No 200
>PRK09897 hypothetical protein; Provisional
Probab=98.81 E-value=4.3e-08 Score=100.16 Aligned_cols=41 Identities=29% Similarity=0.311 Sum_probs=35.3
Q ss_pred CeEEEECCChHHHHHHHHHHHCC--CcEEEEecCcccC-ceeee
Q 009635 58 LKVVIAGAGLAGLSTAKYLADAG--HKPLLLEARDVLG-GKIAA 98 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~G--~~V~vlEa~~~~G-G~~~~ 98 (530)
++|+|||||++|+++|.+|.+.+ .+|+|+|++..+| |...+
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays 45 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYS 45 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeec
Confidence 58999999999999999999864 5899999988877 65544
No 201
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.79 E-value=8.3e-07 Score=86.51 Aligned_cols=58 Identities=16% Similarity=0.164 Sum_probs=45.4
Q ss_pred CccchHHHHHHHHH-cCcEEEecceeeEEEecCCCCEEEEEEcCC----cEEecCEEEEccCh
Q 009635 271 PERLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTNG----NVIDGDAYVFATPV 328 (530)
Q Consensus 271 ~~~l~~~l~~~l~~-~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G----~~i~ad~VI~a~~~ 328 (530)
...+++.|.+.+++ .+++|..++.+.+|..+++..+.+|.+.+. .++.|+.||+||+.
T Consensus 132 G~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG 194 (518)
T COG0029 132 GKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGG 194 (518)
T ss_pred cHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCceEeEEEEecCCCeEEEEecCeEEEecCC
Confidence 56788999998876 479999999999998855534547776432 47899999999965
No 202
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.79 E-value=2.4e-08 Score=102.11 Aligned_cols=42 Identities=33% Similarity=0.458 Sum_probs=38.8
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceeee
Q 009635 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (530)
Q Consensus 57 ~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~ 98 (530)
.+||+|||||++|++||..+++.|++|+|+|+++.+||.|..
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~ 44 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLN 44 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeecc
Confidence 489999999999999999999999999999988889998743
No 203
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.79 E-value=5.4e-08 Score=99.05 Aligned_cols=42 Identities=33% Similarity=0.487 Sum_probs=37.9
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcc-cCceeee
Q 009635 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV-LGGKIAA 98 (530)
Q Consensus 57 ~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~-~GG~~~~ 98 (530)
.+||+|||||++|++||..|++.|++|+|+|+++. +||.|-.
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~ 45 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCIN 45 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeec
Confidence 58999999999999999999999999999999864 6887643
No 204
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.79 E-value=1.9e-07 Score=95.15 Aligned_cols=41 Identities=27% Similarity=0.459 Sum_probs=37.7
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceeee
Q 009635 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (530)
Q Consensus 57 ~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~ 98 (530)
++||+|||||++|++||..+++.|++|+|+|+ +.+||.|..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~~ 42 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCVI 42 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceeec
Confidence 58999999999999999999999999999998 478997764
No 205
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.79 E-value=1.4e-08 Score=102.67 Aligned_cols=54 Identities=19% Similarity=0.284 Sum_probs=40.7
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHH
Q 009635 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (530)
Q Consensus 273 ~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (530)
.|.+.|.+.+. +..++++++|++|..++++ +.|++.+|++++||.||.|.+.++
T Consensus 106 ~l~~~L~~~~~--~~~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~ad~vVgADG~~S 159 (414)
T TIGR03219 106 DFLDALLKHLP--EGIASFGKRATQIEEQAEE--VQVLFTDGTEYRCDLLIGADGIKS 159 (414)
T ss_pred HHHHHHHHhCC--CceEEcCCEEEEEEecCCc--EEEEEcCCCEEEeeEEEECCCccH
Confidence 34455555543 3568899999999875444 357788898999999999998865
No 206
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.79 E-value=1.5e-07 Score=96.63 Aligned_cols=42 Identities=38% Similarity=0.503 Sum_probs=36.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCcEEEEec------CcccCceee
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEA------RDVLGGKIA 97 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa------~~~~GG~~~ 97 (530)
..+|++|||||++|++||..+++.|.+|+|+|+ ...+||.+.
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~ 50 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCL 50 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccc
Confidence 468999999999999999999999999999998 245666553
No 207
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=98.78 E-value=2.3e-08 Score=89.70 Aligned_cols=64 Identities=14% Similarity=0.140 Sum_probs=48.5
Q ss_pred CccchHHHHHHHHHcC-cEEEecceeeEEEecCCCCEEEEEEc---C-CcEEecCEEEEccChHHHhhhCCc
Q 009635 271 PERLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLT---N-GNVIDGDAYVFATPVDILKLQLPE 337 (530)
Q Consensus 271 ~~~l~~~l~~~l~~~g-~~i~~~t~V~~I~~~~~g~~~~v~~~---~-G~~i~ad~VI~a~~~~~~~~ll~~ 337 (530)
|+.|++.|++.+.+.| |++..+ .|.+|.. +.+++..|... + +....++++|++.++|+ .+|++.
T Consensus 146 P~lFc~~i~sea~k~~~V~lv~G-kv~ev~d-Ek~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWT-skllp~ 214 (380)
T KOG2852|consen 146 PYLFCHFILSEAEKRGGVKLVFG-KVKEVSD-EKHRINSVPKAEAEDTIIKADVHKIVVSAGPWT-SKLLPF 214 (380)
T ss_pred HHHHHHHHHHHHHhhcCeEEEEe-eeEEeec-ccccccccchhhhcCceEEeeeeEEEEecCCCc-hhhccc
Confidence 8899999999999886 888777 5889974 45555444443 2 34577889999999998 666655
No 208
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.76 E-value=1.5e-07 Score=94.68 Aligned_cols=62 Identities=10% Similarity=0.148 Sum_probs=43.9
Q ss_pred cchHHHHHHHHHc-CcEEEecceeeEEEecCCCCEEEEEE---cCCcEEecCEEEEccChHH-HhhhCC
Q 009635 273 RLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLL---TNGNVIDGDAYVFATPVDI-LKLQLP 336 (530)
Q Consensus 273 ~l~~~l~~~l~~~-g~~i~~~t~V~~I~~~~~g~~~~v~~---~~G~~i~ad~VI~a~~~~~-~~~ll~ 336 (530)
.|.+.|.+.+.+. |+++++++.|+++..++++ + .|++ .+++++.||.||-|-|.++ +++.++
T Consensus 108 ~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~-v-~v~~~~~~~~~~~~adlvIgADG~~S~vR~~~~ 174 (400)
T PRK06475 108 DLQSALLDACRNNPGIEIKLGAEMTSQRQTGNS-I-TATIIRTNSVETVSAAYLIACDGVWSMLRAKAG 174 (400)
T ss_pred HHHHHHHHHHHhcCCcEEEECCEEEEEecCCCc-e-EEEEEeCCCCcEEecCEEEECCCccHhHHhhcC
Confidence 4556677777654 7899999999999874444 2 3443 3345799999999998854 455553
No 209
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.76 E-value=8.2e-08 Score=92.45 Aligned_cols=36 Identities=36% Similarity=0.498 Sum_probs=30.9
Q ss_pred CeEEEECCChHHHHHHHHHHHCC-CcEEEEecCcccC
Q 009635 58 LKVVIAGAGLAGLSTAKYLADAG-HKPLLLEARDVLG 93 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~G-~~V~vlEa~~~~G 93 (530)
||+||||||.+|..+|.+|++.| .+|+|||+.....
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~ 37 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYP 37 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCT
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCc
Confidence 69999999999999999999997 6999999987644
No 210
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.76 E-value=2e-07 Score=102.00 Aligned_cols=43 Identities=30% Similarity=0.413 Sum_probs=40.2
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceee
Q 009635 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (530)
Q Consensus 55 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~ 97 (530)
+..++|+|||||+|||+||+.|++.|++|+|+|+.+.+||.+.
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~ 346 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLR 346 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEE
Confidence 4578999999999999999999999999999999999999875
No 211
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.75 E-value=1.7e-07 Score=99.96 Aligned_cols=44 Identities=32% Similarity=0.450 Sum_probs=40.3
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceeee
Q 009635 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (530)
Q Consensus 55 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~ 98 (530)
+...+|+|||||++||+||+.|++.|++|+|+|+.+.+||.+..
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~ 368 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTF 368 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeee
Confidence 35679999999999999999999999999999999999997653
No 212
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.75 E-value=3.5e-07 Score=101.09 Aligned_cols=44 Identities=39% Similarity=0.465 Sum_probs=40.1
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceeee
Q 009635 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (530)
Q Consensus 55 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~ 98 (530)
+...+|+|||||++||+||+.|++.|++|+|+|+.+.+||.++.
T Consensus 428 ~~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~ 471 (1006)
T PRK12775 428 KKLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQY 471 (1006)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeec
Confidence 35679999999999999999999999999999999999997653
No 213
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.74 E-value=8.4e-08 Score=97.74 Aligned_cols=56 Identities=18% Similarity=0.252 Sum_probs=43.8
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHH
Q 009635 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (530)
Q Consensus 272 ~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (530)
..+.+.+.+.++++|+++++++.|++|..+ ++.+ .+.+.+| ++.+|.||+|++...
T Consensus 199 ~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~-~~~v-~v~~~~g-~i~~D~vl~a~G~~p 254 (441)
T PRK08010 199 RDIADNIATILRDQGVDIILNAHVERISHH-ENQV-QVHSEHA-QLAVDALLIASGRQP 254 (441)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCEE-EEEEcCC-eEEeCEEEEeecCCc
Confidence 345667778888999999999999999864 3333 4666666 699999999998765
No 214
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.73 E-value=3e-07 Score=94.21 Aligned_cols=43 Identities=37% Similarity=0.435 Sum_probs=39.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceeee
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~ 98 (530)
.++||+|||||.+|++||..|++.|++|+|+|+.+.+||.|-.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n 45 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLN 45 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccC
Confidence 4689999999999999999999999999999998888987644
No 215
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.73 E-value=9.8e-08 Score=97.87 Aligned_cols=41 Identities=32% Similarity=0.415 Sum_probs=36.9
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceeee
Q 009635 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (530)
Q Consensus 57 ~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~ 98 (530)
++||+|||||++|++||..|++.|.+|+|+|++ .+||.+..
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~~ 44 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCLN 44 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceec
Confidence 589999999999999999999999999999985 66776654
No 216
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.73 E-value=3.3e-07 Score=94.13 Aligned_cols=42 Identities=33% Similarity=0.434 Sum_probs=38.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceeee
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~ 98 (530)
..+||+|||||++|++||..|++.|++|+|+|+. .+||.+..
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~ 44 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLH 44 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEc
Confidence 5789999999999999999999999999999985 78888764
No 217
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.73 E-value=8.5e-08 Score=90.36 Aligned_cols=58 Identities=21% Similarity=0.280 Sum_probs=48.9
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcC---------------CcEEecCEEEEccCh
Q 009635 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN---------------GNVIDGDAYVFATPV 328 (530)
Q Consensus 271 ~~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~---------------G~~i~ad~VI~a~~~ 328 (530)
...+++.|-+.+++.|++|+-+-.+.++.++++|.+.+|.|+| |-.+.|+.-|+|-+-
T Consensus 182 L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc 254 (621)
T KOG2415|consen 182 LGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGC 254 (621)
T ss_pred HHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEEEeccc
Confidence 4578888999999999999999999999999999999988854 225788888888653
No 218
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.72 E-value=1.2e-07 Score=94.17 Aligned_cols=43 Identities=35% Similarity=0.526 Sum_probs=40.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceeee
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~ 98 (530)
...+|+|||||+|||++|++|.+.|+.|+++||.+.+||....
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y 47 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKY 47 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEee
Confidence 4679999999999999999999999999999999999997665
No 219
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.72 E-value=1.7e-06 Score=85.57 Aligned_cols=36 Identities=36% Similarity=0.509 Sum_probs=33.8
Q ss_pred eEEEECCChHHHHHHHHHHHC--CCcEEEEecCcccCc
Q 009635 59 KVVIAGAGLAGLSTAKYLADA--GHKPLLLEARDVLGG 94 (530)
Q Consensus 59 dVvIIGaG~aGl~aA~~L~~~--G~~V~vlEa~~~~GG 94 (530)
||+|||||++|+++|+.|++. |++|+|+|+.+.+||
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~ 38 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGG 38 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence 899999999999999999987 999999999987776
No 220
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.71 E-value=4.1e-07 Score=95.00 Aligned_cols=58 Identities=10% Similarity=0.107 Sum_probs=43.7
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCC--CCEEEEEE---cCCc--EEecCEEEEccChHH
Q 009635 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDD--GTVKNFLL---TNGN--VIDGDAYVFATPVDI 330 (530)
Q Consensus 273 ~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~--g~~~~v~~---~~G~--~i~ad~VI~a~~~~~ 330 (530)
.+...+.+.+.+.+++|+.++.|+++..+++ |++++|.. .+|+ .+.|+.||+||+.+.
T Consensus 127 ~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 191 (614)
T TIGR02061 127 SYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAV 191 (614)
T ss_pred hHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCccc
Confidence 4445556666666789999999999997543 68888764 3454 589999999998864
No 221
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.71 E-value=8.4e-08 Score=98.53 Aligned_cols=41 Identities=34% Similarity=0.490 Sum_probs=34.9
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceeee
Q 009635 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~ 98 (530)
++|+|||||++||++|..|.+.|++|+++|+++.+||....
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~ 42 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRY 42 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCH
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCee
Confidence 58999999999999999999999999999999999997653
No 222
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.68 E-value=8e-08 Score=100.28 Aligned_cols=41 Identities=34% Similarity=0.574 Sum_probs=36.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceee
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~ 97 (530)
..+||+|||||++||+||..|++.|++|+|+|++ ..||.+.
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~ 43 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQIT 43 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEE
Confidence 4589999999999999999999999999999985 6777654
No 223
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.68 E-value=4e-07 Score=83.50 Aligned_cols=64 Identities=25% Similarity=0.279 Sum_probs=52.9
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCc--EEecCEEEEccChHHHhhhCCc
Q 009635 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGN--VIDGDAYVFATPVDILKLQLPE 337 (530)
Q Consensus 273 ~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~--~i~ad~VI~a~~~~~~~~ll~~ 337 (530)
++-+.|...+++.|+.++.+.+|.+... .+++++.|-|.++. .++||.+|+|++...-+.|..+
T Consensus 259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~-~~~~v~~i~trn~~diP~~a~~~VLAsGsffskGLvae 324 (421)
T COG3075 259 RLHNQLQRQFEQLGGLWMPGDEVKKATC-KGGRVTEIYTRNHADIPLRADFYVLASGSFFSKGLVAE 324 (421)
T ss_pred hHHHHHHHHHHHcCceEecCCceeeeee-eCCeEEEEEecccccCCCChhHeeeeccccccccchhh
Confidence 5667788888889999999999999998 57778888888764 5899999999998875666544
No 224
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.67 E-value=1.1e-06 Score=89.82 Aligned_cols=43 Identities=42% Similarity=0.568 Sum_probs=39.5
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceee
Q 009635 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (530)
Q Consensus 55 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~ 97 (530)
...++|+|||||++||++|+.|++.|++|+|+|+++.+||...
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~ 180 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLR 180 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEee
Confidence 4567999999999999999999999999999999999998764
No 225
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.67 E-value=4.9e-07 Score=90.39 Aligned_cols=57 Identities=25% Similarity=0.389 Sum_probs=46.1
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCc--EEecCEEEEccChHH
Q 009635 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGN--VIDGDAYVFATPVDI 330 (530)
Q Consensus 272 ~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~--~i~ad~VI~a~~~~~ 330 (530)
..+.+.+.+.|++.|++|+++++|++++..+++ +.+++.+|+ ++++|+|++|++-..
T Consensus 214 ~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~--v~v~~~~g~~~~~~ad~vLvAiGR~P 272 (454)
T COG1249 214 PEISKELTKQLEKGGVKILLNTKVTAVEKKDDG--VLVTLEDGEGGTIEADAVLVAIGRKP 272 (454)
T ss_pred HHHHHHHHHHHHhCCeEEEccceEEEEEecCCe--EEEEEecCCCCEEEeeEEEEccCCcc
Confidence 466777888888878999999999999875454 467777775 699999999998643
No 226
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.66 E-value=2.6e-07 Score=84.02 Aligned_cols=59 Identities=20% Similarity=0.208 Sum_probs=45.6
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCC---CEEEEEEcCCcEEecCEEEEccChHH
Q 009635 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDG---TVKNFLLTNGNVIDGDAYVFATPVDI 330 (530)
Q Consensus 272 ~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g---~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (530)
..+...+.+.+...|+++.+|-+|..|..+.++ -.+.|....|+++++..||-|++.+.
T Consensus 196 ~~v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~s 257 (453)
T KOG2665|consen 196 GSVTLSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQS 257 (453)
T ss_pred HHHHHHHHHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccH
Confidence 466777888889999999999999999865443 12234445578999999999998865
No 227
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.65 E-value=4.7e-07 Score=98.17 Aligned_cols=43 Identities=37% Similarity=0.471 Sum_probs=39.6
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceee
Q 009635 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (530)
Q Consensus 55 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~ 97 (530)
...+||+|||||++||+||+.|++.|++|+|+|+.+.+||...
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 471 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLK 471 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 3567999999999999999999999999999999999999765
No 228
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=2.1e-07 Score=88.34 Aligned_cols=43 Identities=21% Similarity=0.258 Sum_probs=35.3
Q ss_pred CCCCCCceEEecccccCCCCCcHHHHHHHHHHHHHHHHHhhhhH
Q 009635 472 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLL 515 (530)
Q Consensus 472 ~~~~~~~l~~aG~~~~~~~~~~i~gA~~sg~~aA~~vl~~~~~~ 515 (530)
.+|.++++|.|||-....+. -+..|+-.|..||..+...+...
T Consensus 261 ~~TsvpGifAaGDv~~~~~r-qi~ta~~~G~~Aa~~a~~~l~~~ 303 (305)
T COG0492 261 METSVPGIFAAGDVADKNGR-QIATAAGDGAIAALSAERYLESL 303 (305)
T ss_pred cccCCCCEEEeEeeccCccc-EEeehhhhHHHHHHHHHHHhhhc
Confidence 67889999999999887643 57888889999999888877643
No 229
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.63 E-value=2.2e-06 Score=87.54 Aligned_cols=43 Identities=33% Similarity=0.545 Sum_probs=39.8
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceee
Q 009635 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (530)
Q Consensus 55 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~ 97 (530)
+...+|+|||||++||++|+.|++.|++|+|+|+.+.+||...
T Consensus 139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~ 181 (467)
T TIGR01318 139 PTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLT 181 (467)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence 3567999999999999999999999999999999999999765
No 230
>PRK10262 thioredoxin reductase; Provisional
Probab=98.63 E-value=2.7e-07 Score=89.84 Aligned_cols=43 Identities=35% Similarity=0.587 Sum_probs=37.6
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceeee
Q 009635 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (530)
Q Consensus 55 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~ 98 (530)
...+||+|||||++||+||..|++.|++|+++|+. ..||.+..
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~ 46 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTT 46 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceec
Confidence 36789999999999999999999999999999965 56877654
No 231
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.62 E-value=6.5e-06 Score=85.56 Aligned_cols=59 Identities=20% Similarity=0.237 Sum_probs=49.8
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEc---CC--cEEecCEEEEccChHH
Q 009635 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NG--NVIDGDAYVFATPVDI 330 (530)
Q Consensus 271 ~~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~---~G--~~i~ad~VI~a~~~~~ 330 (530)
+.+++.++++.+.++|++|+++++|++|..+ ++.+++|++. .| .+|.|++||+|+|+|+
T Consensus 127 p~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~-~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa 190 (516)
T TIGR03377 127 PFRLVAANVLDAQEHGARIFTYTKVTGLIRE-GGRVTGVKVEDHKTGEEERIEAQVVINAAGIWA 190 (516)
T ss_pred HHHHHHHHHHHHHHcCCEEEcCcEEEEEEEE-CCEEEEEEEEEcCCCcEEEEEcCEEEECCCcch
Confidence 7899999999999999999999999999874 5556566653 34 2699999999999987
No 232
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=5.8e-07 Score=84.75 Aligned_cols=253 Identities=16% Similarity=0.171 Sum_probs=135.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceeeeeecC------C--------------CCEEeeeeceec
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDG------D--------------GDWYETGLHIFF 115 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~~~~~------~--------------g~~~d~G~~~~~ 115 (530)
+++||+|+|-|+.-...+..|+..|.+|+.+|+++.-||-..+.... + .+-+|+-+.++.
T Consensus 3 eeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sasltl~ql~~~f~~~~~~~~~~~~~~rd~nvDLiPK~lm 82 (440)
T KOG1439|consen 3 EEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESASLTLEQLYKKFKKVSEKPPEKLGRDRDWNVDLIPKFLM 82 (440)
T ss_pred CceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCccccceeHHHHHHHhccccccCccccccccccchhhchHhhh
Confidence 45999999999999999999999999999999999999987764400 0 122222233332
Q ss_pred CCcchHHHHHHHcCCCCCcceeccceeeecCCCCCCcccccCCCCCCCchhhHHHHHhcccCCChHHHHHhhhhhhhhhh
Q 009635 116 GAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAII 195 (530)
Q Consensus 116 ~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (530)
+. ..+..++-+.++...+.+......+.+. .+++....... . ..+ ....+.+.++-+. ..++....
T Consensus 83 An-~~Lvk~Li~T~V~~YL~fk~i~gsfv~~--~~k~~KVP~t~--------~-Ea~-~s~lmgl~eKrr~-~kFl~~V~ 148 (440)
T KOG1439|consen 83 AN-GELVKILIHTGVTRYLEFKSISGSFVYK--KGKIYKVPATE--------A-EAL-TSPLMGLFEKRRV-MKFLKFVL 148 (440)
T ss_pred cc-chHHHHHHHhchhhheEEEeecceEEEE--CCeEEECCCCH--------H-HHh-cCCccchhHHHHH-HHHHHHHh
Confidence 22 2345555666666555544433322221 11222111111 0 001 1122223332211 11111111
Q ss_pred c---Cc-ccccc--cCcccHHHHHHHcCCCHHHHHHHHHHHHhhcccCCCCcccHHHHHHHHHHHHhh--ccC-CeEEee
Q 009635 196 G---GQ-AYVEA--QDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQE--KHG-SKMAFL 266 (530)
Q Consensus 196 ~---~~-~~~~~--~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g-~~~~~~ 266 (530)
. .+ .-+.. ....++.+++.+.++.++..+.....+..... -+--+.+.......+..|... .+| +...|+
T Consensus 149 n~~e~~~~~~~~~~~~k~tm~~~~~~~~l~~~~~~f~gh~~al~~d-d~~ld~p~~~~~~ri~~Y~~S~~~yg~~~ylyP 227 (440)
T KOG1439|consen 149 NYDEEDPKTWQGYDLSKDTMREFLGKFGLLEGTIDFIGHAIALLCD-DSYLDQPAKETLERILLYVRSFARYGKSPYLYP 227 (440)
T ss_pred hhhhhccccccccccccchHHHHHHHhcccccceeeeeeeeEEEec-chhccCccHHHHHHHHHHHHHHhhcCCCcceec
Confidence 1 00 00111 12237888888876554433222111110000 011122333333334333321 222 235566
Q ss_pred cCCCCccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEc
Q 009635 267 DGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFA 325 (530)
Q Consensus 267 ~gg~~~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a 325 (530)
..| ...|.+++++...-.|+++++|.++.+|...++|++.+|...++ ...+++||+-
T Consensus 228 ~yG-lgEL~QgFaRlsAvyGgTYMLn~pi~ei~~~~~gk~igvk~~~~-v~~~k~vi~d 284 (440)
T KOG1439|consen 228 LYG-LGELPQGFARLSAVYGGTYMLNKPIDEINETKNGKVIGVKSGGE-VAKCKKVICD 284 (440)
T ss_pred ccC-cchhhHHHHHHhhccCceeecCCceeeeeccCCccEEEEecCCc-eeecceEEec
Confidence 666 78999999998888899999999999999866788877765444 6777766653
No 233
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.60 E-value=1.1e-06 Score=93.25 Aligned_cols=43 Identities=35% Similarity=0.534 Sum_probs=40.0
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceee
Q 009635 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (530)
Q Consensus 55 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~ 97 (530)
+...+|+|||||++||++|+.|++.|++|+|+|+++.+||.+.
T Consensus 308 ~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~ 350 (639)
T PRK12809 308 PRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLT 350 (639)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeee
Confidence 3578999999999999999999999999999999999999865
No 234
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.59 E-value=8.9e-07 Score=86.30 Aligned_cols=54 Identities=31% Similarity=0.453 Sum_probs=45.1
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCc-EEecCEEEEccChHH
Q 009635 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGN-VIDGDAYVFATPVDI 330 (530)
Q Consensus 271 ~~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~-~i~ad~VI~a~~~~~ 330 (530)
+.++.+...+.|+++||+|+++++|++|+. ++ |++.+|+ +|.++.||.|++...
T Consensus 208 ~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~--~~----v~~~~g~~~I~~~tvvWaaGv~a 262 (405)
T COG1252 208 PPKLSKYAERALEKLGVEVLLGTPVTEVTP--DG----VTLKDGEEEIPADTVVWAAGVRA 262 (405)
T ss_pred CHHHHHHHHHHHHHCCCEEEcCCceEEECC--Cc----EEEccCCeeEecCEEEEcCCCcC
Confidence 467778788889999999999999999974 44 7788887 499999999997643
No 235
>PRK06370 mercuric reductase; Validated
Probab=98.59 E-value=1.3e-06 Score=89.65 Aligned_cols=41 Identities=34% Similarity=0.481 Sum_probs=36.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceee
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~ 97 (530)
.++||+|||||++|++||..|++.|++|+|+|+. .+||.+.
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~ 44 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCV 44 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCcee
Confidence 4689999999999999999999999999999986 5666554
No 236
>PTZ00058 glutathione reductase; Provisional
Probab=98.58 E-value=8.3e-07 Score=91.91 Aligned_cols=43 Identities=26% Similarity=0.414 Sum_probs=38.8
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceeee
Q 009635 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (530)
Q Consensus 55 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~ 98 (530)
..++||+|||||.+|.+||..+++.|.+|+|+|++ .+||.|-.
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln 88 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVN 88 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccc
Confidence 36789999999999999999999999999999986 78887754
No 237
>PLN02507 glutathione reductase
Probab=98.55 E-value=2.9e-06 Score=87.43 Aligned_cols=44 Identities=25% Similarity=0.388 Sum_probs=37.8
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCcEEEEec---------CcccCceeee
Q 009635 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEA---------RDVLGGKIAA 98 (530)
Q Consensus 55 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa---------~~~~GG~~~~ 98 (530)
..++||+|||||.+|+.||..+++.|.+|+|+|+ .+.+||.|-.
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n 75 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVI 75 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeec
Confidence 4578999999999999999999999999999996 2457776643
No 238
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.55 E-value=7.3e-07 Score=91.87 Aligned_cols=61 Identities=20% Similarity=0.092 Sum_probs=46.9
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHHHhhhC
Q 009635 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQL 335 (530)
Q Consensus 273 ~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~~~~ll 335 (530)
.+.+.+.+.|+++|+++++++.|++|...+ +. ..|++.+|+++.+|.||+|++......++
T Consensus 223 ~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~-~~-~~v~~~~g~~i~~D~vl~a~G~~pn~~~l 283 (499)
T PTZ00052 223 QCSEKVVEYMKEQGTLFLEGVVPINIEKMD-DK-IKVLFSDGTTELFDTVLYATGRKPDIKGL 283 (499)
T ss_pred HHHHHHHHHHHHcCCEEEcCCeEEEEEEcC-Ce-EEEEECCCCEEEcCEEEEeeCCCCCcccc
Confidence 345677888888999999999999998643 32 34667788889999999999876544443
No 239
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.53 E-value=1.5e-06 Score=95.78 Aligned_cols=36 Identities=36% Similarity=0.443 Sum_probs=33.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcc
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~ 91 (530)
.++||+|||||.+||+||..+++.|.+|+|+||...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 468999999999999999999999999999999875
No 240
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.51 E-value=2.1e-06 Score=78.92 Aligned_cols=41 Identities=46% Similarity=0.729 Sum_probs=36.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCc--ccCcee
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD--VLGGKI 96 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~--~~GG~~ 96 (530)
.++||+|||||.+||.||.+|+.+|++|+|+|++. .+||..
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQA 46 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQA 46 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCceEEEEccccccccccee
Confidence 57899999999999999999999999999999874 467654
No 241
>PLN02546 glutathione reductase
Probab=98.50 E-value=5.7e-06 Score=85.81 Aligned_cols=33 Identities=18% Similarity=0.399 Sum_probs=31.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCcEEEEec
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEA 88 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa 88 (530)
.++||+|||||.+|+.||..+++.|.+|+|+|+
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 468999999999999999999999999999996
No 242
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=98.48 E-value=2.9e-06 Score=88.53 Aligned_cols=52 Identities=12% Similarity=0.131 Sum_probs=38.9
Q ss_pred HHHHHHHH-HcCcEEEecceeeEEEecCCCCEEEEEEcCC-c---EEecCEEEEccCh
Q 009635 276 LPIVEHIQ-SLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-N---VIDGDAYVFATPV 328 (530)
Q Consensus 276 ~~l~~~l~-~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G-~---~i~ad~VI~a~~~ 328 (530)
..+...+. +.+++|++++.|++|..+ ++++++|++.++ + .+.++.||+|.++
T Consensus 197 ~~~l~~a~~r~nl~i~~~~~V~rI~~~-~~ra~GV~~~~~~~~~~~~~ak~VIlaAGa 253 (532)
T TIGR01810 197 RAYLHPAMKRPNLEVQTRAFVTKINFE-GNRATGVEFKKGGRKEHTEANKEVILSAGA 253 (532)
T ss_pred HHHhhhhccCCCeEEEeCCEEEEEEec-CCeEEEEEEEeCCcEEEEEEeeeEEEccCC
Confidence 34444444 446999999999999984 677888887543 2 3589999999987
No 243
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.48 E-value=1.5e-06 Score=89.40 Aligned_cols=44 Identities=36% Similarity=0.396 Sum_probs=40.1
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceeee
Q 009635 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (530)
Q Consensus 55 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~ 98 (530)
..++||+|||||.|||.||..+++.|.+|+|+||....+|++..
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~~ 47 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVA 47 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchhh
Confidence 46789999999999999999999999999999999888877654
No 244
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.47 E-value=5.5e-06 Score=84.91 Aligned_cols=40 Identities=30% Similarity=0.439 Sum_probs=36.2
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceeee
Q 009635 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~ 98 (530)
.||+|||||.+|+.||..|++.|.+|+|+|++ .+||.|-.
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~-~~gG~c~~ 41 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERD-GLGGAAVL 41 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCCcccc
Confidence 58999999999999999999999999999986 47887754
No 245
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.46 E-value=3.6e-06 Score=86.14 Aligned_cols=37 Identities=32% Similarity=0.356 Sum_probs=35.3
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCc
Q 009635 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGG 94 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG 94 (530)
+||+|||+|++|+.+|+.|+++|++|+|+|+....||
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~ 37 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSF 37 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCC
Confidence 6999999999999999999999999999999988876
No 246
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.46 E-value=2.3e-06 Score=64.13 Aligned_cols=34 Identities=38% Similarity=0.646 Sum_probs=31.4
Q ss_pred eEEEECCChHHHHHHHHHHHCCCcEEEEecCccc
Q 009635 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (530)
Q Consensus 59 dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~ 92 (530)
+|+|||||+.|+-+|..|++.|.+|+|+|+++.+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRL 34 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence 5899999999999999999999999999997653
No 247
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=98.46 E-value=1.4e-05 Score=83.87 Aligned_cols=43 Identities=37% Similarity=0.522 Sum_probs=39.6
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceee
Q 009635 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (530)
Q Consensus 55 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~ 97 (530)
....+|+|||||++||++|+.|++.|++|+|+|+++.+||...
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~ 177 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMR 177 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 4567999999999999999999999999999999999999764
No 248
>PRK02106 choline dehydrogenase; Validated
Probab=98.44 E-value=2.1e-06 Score=90.09 Aligned_cols=37 Identities=35% Similarity=0.408 Sum_probs=33.9
Q ss_pred CCCCeEEEECCChHHHHHHHHHHH-CCCcEEEEecCcc
Q 009635 55 SKPLKVVIAGAGLAGLSTAKYLAD-AGHKPLLLEARDV 91 (530)
Q Consensus 55 ~~~~dVvIIGaG~aGl~aA~~L~~-~G~~V~vlEa~~~ 91 (530)
..++|+||||||.+|+.+|..|++ .|++|+|||+...
T Consensus 3 ~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~ 40 (560)
T PRK02106 3 TMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP 40 (560)
T ss_pred CCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence 456899999999999999999999 7999999999854
No 249
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=98.42 E-value=9.2e-07 Score=82.45 Aligned_cols=72 Identities=24% Similarity=0.343 Sum_probs=52.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHHC----CCcEEEEecCcccCceeeeee-cCCCCEEeeeeceecCCcchHHHHHHHc
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADA----GHKPLLLEARDVLGGKIAAWK-DGDGDWYETGLHIFFGAYPNIQNLFGEL 128 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~----G~~V~vlEa~~~~GG~~~~~~-~~~g~~~d~G~~~~~~~~~~~~~l~~~l 128 (530)
+.+.+-|||+|+|||++|..|.+. |.+|.|+|.-+..||...... ...|++.- |++-+-..+..++++++.+
T Consensus 21 dqKsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSlDG~~~p~~GfV~R-GGRemEnhfEc~WDlfrsI 97 (587)
T COG4716 21 DQKSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSLDGAGSPHHGFVVR-GGREMENHFECLWDLFRSI 97 (587)
T ss_pred ccceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCCCCCCCCcccceeec-CcHHHHHHHHHHHHHHhcC
Confidence 456789999999999999999885 679999999999999765422 22355443 4444444455677777654
No 250
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.41 E-value=4.4e-07 Score=91.05 Aligned_cols=55 Identities=13% Similarity=0.267 Sum_probs=43.7
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHH
Q 009635 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (530)
Q Consensus 273 ~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (530)
.+...+.+.++++|++|++++.|++|.. ++. +.|++.+|+++.||.||+|++...
T Consensus 187 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~--~~~-~~v~l~~g~~i~aD~Vv~a~G~~p 241 (396)
T PRK09754 187 PVQRYLLQRHQQAGVRILLNNAIEHVVD--GEK-VELTLQSGETLQADVVIYGIGISA 241 (396)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEEc--CCE-EEEEECCCCEEECCEEEECCCCCh
Confidence 3445567777889999999999999975 332 357788898999999999998754
No 251
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.40 E-value=7.7e-06 Score=76.82 Aligned_cols=36 Identities=33% Similarity=0.473 Sum_probs=33.6
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 009635 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (530)
Q Consensus 54 ~~~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~ 89 (530)
.+...||+|||||++|.+.|+.|+|.|.+|.|+|+.
T Consensus 42 ~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 42 NDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred cCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 456789999999999999999999999999999986
No 252
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.30 E-value=4.2e-06 Score=90.89 Aligned_cols=56 Identities=20% Similarity=0.247 Sum_probs=45.3
Q ss_pred hHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHH
Q 009635 275 CLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (530)
Q Consensus 275 ~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (530)
...+.+.++++|++|++++.|++|..++++....|++.+|+++.+|.||+|++...
T Consensus 190 ~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rP 245 (847)
T PRK14989 190 GEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRP 245 (847)
T ss_pred HHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCccc
Confidence 45677888899999999999999975333445567888999999999999997644
No 253
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=1.4e-05 Score=74.78 Aligned_cols=248 Identities=16% Similarity=0.206 Sum_probs=128.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceeeeeecC---------------C----CCEEeeeeceecC
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDG---------------D----GDWYETGLHIFFG 116 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~~~~~---------------~----g~~~d~G~~~~~~ 116 (530)
..+||+|+|-|+.-..-+..|+-+|.+|+++|+++.-|+-..+.... . .+-+|.-+.++..
T Consensus 5 ~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~asltl~ql~~~~~~~~~~p~k~~~drd~~iDL~PK~l~A 84 (434)
T COG5044 5 TLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLTLTQLEKYFDECEKRPSKGGGDRDLNIDLIPKFLFA 84 (434)
T ss_pred ccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccccceeHHHHHHHhhhhhccccccccccccchhhchhhhcc
Confidence 47999999999999999999999999999999999999877664300 0 1223333443332
Q ss_pred CcchHHHHHHHcCCCCCcceeccceeeecCCCCCCcccccCCCCCCCchhhHHHHHhcccCCChHHHHHhhhhhhhhhhc
Q 009635 117 AYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIG 196 (530)
Q Consensus 117 ~~~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (530)
. ..+..++-+.++...+.+.+-...+.+. ++++....... .. ......+++.++-+. +.++.....
T Consensus 85 ~-s~l~~iLi~t~v~~YLefk~i~~~~~~~--~~k~~kVP~ne---------~e-i~~s~~lsL~eKr~v-mrFl~~V~n 150 (434)
T COG5044 85 N-SELLKILIETGVTEYLEFKQISGSFLYR--PGKIYKVPYNE---------AE-IFTSPLLSLFEKRRV-MRFLKWVSN 150 (434)
T ss_pred c-chHHHHHHHhChHhheeeeeccccEEec--CCcEEECCccH---------Hh-hhcCCCcchhhHHHH-HHHHHHHHh
Confidence 2 2345566666666655544433222221 11222111110 00 111122233332211 111111111
Q ss_pred Cccc---cccc-Ccc-cHHHHHHHcCCCHHHHHHHHHHHHhhcccCCCCcccHHHHHHHHHHHHhh--ccC-CeEEeecC
Q 009635 197 GQAY---VEAQ-DGL-TVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQE--KHG-SKMAFLDG 268 (530)
Q Consensus 197 ~~~~---~~~~-~~~-s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g-~~~~~~~g 268 (530)
+... +.++ .+. +++...+..++.......+...+...+ + -+.+.......+..|+.. .+| +...|+.-
T Consensus 151 ~~~~~~~~~~~~e~k~~~~~~~ekf~L~~~~~e~i~~~i~l~l---d-l~~p~re~~erIl~Y~~Sf~~yg~~pyLyp~Y 226 (434)
T COG5044 151 YAEQKSTLQELYESKDTMEFLFEKFGLSGATEEFIGHGIALSL---D-LDIPAREALERILRYMRSFGDYGKSPYLYPRY 226 (434)
T ss_pred HHhhhhhchhhhhcccHHHHHHHHHccCcchhhhhhhhhhhhc---c-ccCCchHHHHHHHHHHHhhcccCCCcceeecc
Confidence 1100 0010 112 223333334444333222222222211 1 233334444444444432 333 34556665
Q ss_pred CCCccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEc
Q 009635 269 NPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFA 325 (530)
Q Consensus 269 g~~~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a 325 (530)
| +..|.+++++...-.|+++++|+++.+|... +. +.+|.. ++.+..|.+||..
T Consensus 227 G-l~El~QGFaRssav~GgtymLn~~i~ein~t-k~-v~~v~~-~~~~~ka~KiI~~ 279 (434)
T COG5044 227 G-LGELSQGFARSSAVYGGTYMLNQAIDEINET-KD-VETVDK-GSLTQKAGKIISS 279 (434)
T ss_pred C-chhhhHHHHHhhhccCceeecCcchhhhccc-cc-eeeeec-CcceeecCcccCC
Confidence 5 7899999999888889999999999999753 22 334443 3347888888864
No 254
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.26 E-value=1.5e-06 Score=87.88 Aligned_cols=45 Identities=31% Similarity=0.436 Sum_probs=40.3
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHH--CCCcEEEEecCcccCceeee
Q 009635 54 PSKPLKVVIAGAGLAGLSTAKYLAD--AGHKPLLLEARDVLGGKIAA 98 (530)
Q Consensus 54 ~~~~~dVvIIGaG~aGl~aA~~L~~--~G~~V~vlEa~~~~GG~~~~ 98 (530)
.+...+|+|||||+||++||+.|++ .|++|+|+|+.+.+||.++.
T Consensus 23 ~~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~ 69 (491)
T PLN02852 23 TSEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRS 69 (491)
T ss_pred CCCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEee
Confidence 3456799999999999999999997 69999999999999997764
No 255
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.25 E-value=1.5e-06 Score=94.47 Aligned_cols=43 Identities=40% Similarity=0.619 Sum_probs=40.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceeee
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~ 98 (530)
..+||+|||||+|||+||+.|++.|++|+|+|+++.+||.+..
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~ 578 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKN 578 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeee
Confidence 4579999999999999999999999999999999999998754
No 256
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=7.6e-05 Score=70.74 Aligned_cols=120 Identities=18% Similarity=0.236 Sum_probs=82.7
Q ss_pred cccCcccHHHHHHHcCCCHHHHHHHHHHHHhhcccCCCCcccHHHHHHHHHHHHh--hccCC-eEEeecCCCCccchHHH
Q 009635 202 EAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQ--EKHGS-KMAFLDGNPPERLCLPI 278 (530)
Q Consensus 202 ~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~-~~~~~~gg~~~~l~~~l 278 (530)
.+....++.+||+..++.+.+..-++..+ ..++..+.....++.....|+. +.+|. .+.|+--| ...|.+.+
T Consensus 218 ~~~~e~~F~EyL~~~rltp~lqs~vl~aI----aM~~~~~~tt~eGm~at~~fl~slGrfgntpfLfPlYG-qGELpQcF 292 (547)
T KOG4405|consen 218 VEFRERPFSEYLKTMRLTPKLQSIVLHAI----AMLSESQLTTIEGMDATKNFLTSLGRFGNTPFLFPLYG-QGELPQCF 292 (547)
T ss_pred HHhhcCcHHHHHHhcCCChhhHHHHHHHH----HhcCcccccHHHHHHHHHHHHHHhhccCCCcceeeccC-CCcchHHH
Confidence 34456789999999999888765544433 2245555677777776666664 23443 34555444 67999999
Q ss_pred HHHHHHcCcEEEecceeeEEEecCCC-CEEEEEEcCCcEEecCEEEEcc
Q 009635 279 VEHIQSLGGEVRLNSRVQKIELNDDG-TVKNFLLTNGNVIDGDAYVFAT 326 (530)
Q Consensus 279 ~~~l~~~g~~i~~~t~V~~I~~~~~g-~~~~v~~~~G~~i~ad~VI~a~ 326 (530)
.+.+.-.|+-..+..+|+.|..+++. ++..+....|+++.++++|++-
T Consensus 293 CRlcAVfGgIYcLr~~Vq~ivldk~s~~~~~~l~s~g~ri~~k~~v~s~ 341 (547)
T KOG4405|consen 293 CRLCAVFGGIYCLRRPVQAIVLDKESLDCKAILDSFGQRINAKNFVVSP 341 (547)
T ss_pred HHHHHHhcceEEeccchhheeecccccchhhhHhhhcchhcceeeeecC
Confidence 99999899999999999999874332 1111334567789999888753
No 257
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.25 E-value=5.6e-05 Score=76.54 Aligned_cols=52 Identities=23% Similarity=0.325 Sum_probs=42.6
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChH
Q 009635 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (530)
Q Consensus 272 ~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~ 329 (530)
..+.+.+.+.|+++|+++++++.|++|.. + .|++.+|+++.+|.||.|++..
T Consensus 228 ~~~~~~~~~~L~~~gV~v~~~~~v~~v~~--~----~v~~~~g~~i~~d~vi~~~G~~ 279 (424)
T PTZ00318 228 QALRKYGQRRLRRLGVDIRTKTAVKEVLD--K----EVVLKDGEVIPTGLVVWSTGVG 279 (424)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeEEEEeC--C----EEEECCCCEEEccEEEEccCCC
Confidence 34567778888999999999999999963 2 2667889899999999998753
No 258
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.23 E-value=1.1e-06 Score=84.74 Aligned_cols=44 Identities=36% Similarity=0.611 Sum_probs=40.6
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceeee
Q 009635 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (530)
Q Consensus 55 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~ 98 (530)
.-..+++|||||+||++||..|++.|++|.|+|+++.+||+...
T Consensus 122 ~v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak 165 (622)
T COG1148 122 EVSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAK 165 (622)
T ss_pred hhccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHh
Confidence 34568999999999999999999999999999999999999765
No 259
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.23 E-value=4.1e-05 Score=72.02 Aligned_cols=43 Identities=33% Similarity=0.441 Sum_probs=40.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceeee
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~ 98 (530)
.++||+|||+|+.|-.||...++.|++.+.+|++..+||.+-.
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLn 80 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLN 80 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeee
Confidence 6899999999999999999999999999999999999998765
No 260
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.20 E-value=7.1e-06 Score=89.13 Aligned_cols=54 Identities=13% Similarity=0.156 Sum_probs=44.3
Q ss_pred hHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHH
Q 009635 275 CLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (530)
Q Consensus 275 ~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (530)
...+.+.++++|+++++++.|++|.. ++....|++.+|+++.+|.||+|++...
T Consensus 185 ~~~l~~~l~~~GV~v~~~~~v~~i~~--~~~~~~v~~~dG~~i~~D~Vi~a~G~~P 238 (785)
T TIGR02374 185 GRLLQRELEQKGLTFLLEKDTVEIVG--ATKADRIRFKDGSSLEADLIVMAAGIRP 238 (785)
T ss_pred HHHHHHHHHHcCCEEEeCCceEEEEc--CCceEEEEECCCCEEEcCEEEECCCCCc
Confidence 34567778889999999999999974 3455678889999999999999998643
No 261
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.19 E-value=5e-05 Score=77.76 Aligned_cols=40 Identities=35% Similarity=0.518 Sum_probs=34.9
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceeee
Q 009635 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~ 98 (530)
++|+|||||.+|++||..|++.|.+|+|+|+.. .||.|-.
T Consensus 1 ~~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~-~GG~c~n 40 (458)
T PRK06912 1 SKLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD-LGGTCLN 40 (458)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCc-ccccCCC
Confidence 389999999999999999999999999999864 6665543
No 262
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.16 E-value=5.4e-05 Score=76.99 Aligned_cols=52 Identities=17% Similarity=0.233 Sum_probs=42.1
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHH
Q 009635 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (530)
Q Consensus 273 ~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (530)
.+...+.+.++++|+++++++.|++|.. . .|++.+|+++.+|.||+|++...
T Consensus 190 ~~~~~l~~~l~~~gI~i~~~~~v~~i~~--~----~v~~~~g~~~~~D~vl~a~G~~p 241 (438)
T PRK13512 190 DMNQPILDELDKREIPYRLNEEIDAING--N----EVTFKSGKVEHYDMIIEGVGTHP 241 (438)
T ss_pred HHHHHHHHHHHhcCCEEEECCeEEEEeC--C----EEEECCCCEEEeCEEEECcCCCc
Confidence 4556778888889999999999999962 2 36667788899999999998643
No 263
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.14 E-value=2.8e-05 Score=76.23 Aligned_cols=38 Identities=29% Similarity=0.402 Sum_probs=32.7
Q ss_pred CCeEEEECCChHHHHHHHHHHHC--C-CcEEEEecCcccCc
Q 009635 57 PLKVVIAGAGLAGLSTAKYLADA--G-HKPLLLEARDVLGG 94 (530)
Q Consensus 57 ~~dVvIIGaG~aGl~aA~~L~~~--G-~~V~vlEa~~~~GG 94 (530)
+++|+|||+|++|+.+|.+|.+. . ..|.|+|.+...|+
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~ 41 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQ 41 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCC
Confidence 46999999999999999999986 1 23999999988774
No 264
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.12 E-value=3.1e-06 Score=91.66 Aligned_cols=44 Identities=39% Similarity=0.589 Sum_probs=40.5
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceeee
Q 009635 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (530)
Q Consensus 55 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~ 98 (530)
+...+|+|||||+|||+||+.|++.|++|+|+|+++.+||.+..
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~ 580 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKN 580 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceee
Confidence 45679999999999999999999999999999999999998754
No 265
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.11 E-value=6.7e-06 Score=84.06 Aligned_cols=35 Identities=26% Similarity=0.399 Sum_probs=31.0
Q ss_pred CeEEEECCChHHHHHHHHHHHCC--CcEEEEecCccc
Q 009635 58 LKVVIAGAGLAGLSTAKYLADAG--HKPLLLEARDVL 92 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~G--~~V~vlEa~~~~ 92 (530)
++|||||||++|+++|..|++.+ .+|+|+|+++..
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~ 37 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIV 37 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcc
Confidence 37999999999999999999875 589999998664
No 266
>PRK07846 mycothione reductase; Reviewed
Probab=98.08 E-value=5.8e-05 Score=76.96 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=32.3
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceeee
Q 009635 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (530)
Q Consensus 57 ~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~ 98 (530)
++|++|||||.+|.+||.. ..|.+|+|+|+. .+||.|-.
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~-~~GGtC~n 39 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKG-TFGGTCLN 39 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCC-CCCCcccC
Confidence 3799999999999998866 459999999984 57776644
No 267
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.07 E-value=1.1e-05 Score=79.69 Aligned_cols=34 Identities=38% Similarity=0.528 Sum_probs=31.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~ 89 (530)
..+||+|||||.||+-||...++.|.+++|+=-+
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~ 36 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLN 36 (621)
T ss_pred CCCceEEECCCccchHHHHhhhccCCeEEEEEcC
Confidence 4589999999999999999999999999888655
No 268
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.06 E-value=4.1e-06 Score=85.99 Aligned_cols=41 Identities=37% Similarity=0.540 Sum_probs=37.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceee
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~ 97 (530)
..+||+|||||++|++||..|++.|++|+|+|+ +.+||.+.
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~ 42 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCL 42 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Ccccccee
Confidence 358999999999999999999999999999999 67888764
No 269
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.05 E-value=0.00011 Score=75.12 Aligned_cols=39 Identities=18% Similarity=0.273 Sum_probs=32.9
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceeee
Q 009635 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (530)
Q Consensus 57 ~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~ 98 (530)
.+|++|||||.+|..||.. ..|.+|+|+|+ +.+||.|-.
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~-~~~GGtC~n 40 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEK-GTFGGTCLN 40 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCeeec
Confidence 5899999999999998654 46999999998 567887755
No 270
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.04 E-value=1.5e-05 Score=73.95 Aligned_cols=44 Identities=30% Similarity=0.399 Sum_probs=40.8
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceeee
Q 009635 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (530)
Q Consensus 55 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~ 98 (530)
...+|..|||||-.|+++|+..++.|.+|.|+|..-.+||.|-.
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn 61 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVN 61 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEe
Confidence 45899999999999999999999999999999998899998765
No 271
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.02 E-value=8.8e-06 Score=81.17 Aligned_cols=43 Identities=35% Similarity=0.290 Sum_probs=38.5
Q ss_pred CCCeEEEECCChHHHHHHHHHH-HCCCcEEEEecCcccCceeee
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLA-DAGHKPLLLEARDVLGGKIAA 98 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~-~~G~~V~vlEa~~~~GG~~~~ 98 (530)
...+|+|||||+||+.||.+|+ +.|++|+|+|+.+.+||..+.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~ 81 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRY 81 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEE
Confidence 4568999999999999999775 569999999999999998875
No 272
>PRK14694 putative mercuric reductase; Provisional
Probab=98.02 E-value=6.3e-06 Score=84.60 Aligned_cols=43 Identities=21% Similarity=0.429 Sum_probs=38.5
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceeee
Q 009635 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (530)
Q Consensus 55 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~ 98 (530)
...+||+|||||++|++||..|++.|++|+|+|+. .+||.+..
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n 46 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVN 46 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceec
Confidence 46789999999999999999999999999999986 68887643
No 273
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=98.01 E-value=0.00014 Score=70.94 Aligned_cols=114 Identities=23% Similarity=0.337 Sum_probs=77.1
Q ss_pred cccHHHHHHHcCCCHHHHHHHHHHHHhhcccCCCCcccHHHHHHHHHHHHhhccCCeEEeecCCCCccchHHHHHHHHHc
Q 009635 206 GLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSL 285 (530)
Q Consensus 206 ~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~gg~~~~l~~~l~~~l~~~ 285 (530)
..+..++|++.|+++.+.++++.+.....++.+ .++....++..+.. ..+..+. +.|| -..+++.|++. .
T Consensus 69 ~~t~~e~L~~~gi~~~fi~Elv~a~tRvNYgQ~-~~i~a~~G~vSla~----a~~gl~s-V~GG-N~qI~~~ll~~---S 138 (368)
T PF07156_consen 69 KVTGEEYLKENGISERFINELVQAATRVNYGQN-VNIHAFAGLVSLAG----ATGGLWS-VEGG-NWQIFEGLLEA---S 138 (368)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHhheEeecccc-cchhhhhhheeeee----ccCCceE-ecCC-HHHHHHHHHHH---c
Confidence 578999999999999999999999998888765 34555443322221 1233344 4555 37888887764 4
Q ss_pred CcEEEecceeeEE-EecCCCC-EEEEEEcC--C-cEEecCEEEEccChHH
Q 009635 286 GGEVRLNSRVQKI-ELNDDGT-VKNFLLTN--G-NVIDGDAYVFATPVDI 330 (530)
Q Consensus 286 g~~i~~~t~V~~I-~~~~~g~-~~~v~~~~--G-~~i~ad~VI~a~~~~~ 330 (530)
+.++ +|+.|++| ...+++. .+.|...+ + ..-.+|.||+|+|...
T Consensus 139 ~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~~ 187 (368)
T PF07156_consen 139 GANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIATPLQQ 187 (368)
T ss_pred cCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECCCccc
Confidence 6889 99999999 4434443 23454433 2 2355799999999953
No 274
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.01 E-value=8.9e-06 Score=83.42 Aligned_cols=43 Identities=42% Similarity=0.622 Sum_probs=39.6
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceee
Q 009635 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (530)
Q Consensus 55 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~ 97 (530)
+..++|+|||||++||++|+.|++.|++|+|+|+.+.+||...
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 183 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLR 183 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceee
Confidence 4567999999999999999999999999999999999998764
No 275
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.00 E-value=6.3e-06 Score=84.60 Aligned_cols=39 Identities=31% Similarity=0.468 Sum_probs=35.3
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceee
Q 009635 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~ 97 (530)
+||+|||||++|++||..|++.|++|+|+|+.. +||.+-
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~ 39 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCV 39 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCee
Confidence 699999999999999999999999999999876 676653
No 276
>PRK14727 putative mercuric reductase; Provisional
Probab=98.00 E-value=7.2e-06 Score=84.34 Aligned_cols=44 Identities=32% Similarity=0.484 Sum_probs=40.5
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceeee
Q 009635 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (530)
Q Consensus 55 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~ 98 (530)
+.++||+|||||.+|+++|..|++.|.+|+|+|+.+.+||.+..
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n 57 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVN 57 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEecc
Confidence 45689999999999999999999999999999998899998764
No 277
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.99 E-value=3.5e-05 Score=76.54 Aligned_cols=52 Identities=19% Similarity=0.264 Sum_probs=42.1
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHH
Q 009635 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (530)
Q Consensus 273 ~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (530)
.+...+.+.++++|+++++++.|++|.. + .|++.+|+++.+|.||+|++...
T Consensus 192 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~----~v~~~~g~~i~~D~vi~a~G~~p 243 (364)
T TIGR03169 192 KVRRLVLRLLARRGIEVHEGAPVTRGPD--G----ALILADGRTLPADAILWATGARA 243 (364)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEcC--C----eEEeCCCCEEecCEEEEccCCCh
Confidence 3456677788889999999999999852 2 36777888999999999998643
No 278
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.97 E-value=7.7e-05 Score=72.67 Aligned_cols=65 Identities=20% Similarity=0.225 Sum_probs=57.3
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHHHhhhCC
Q 009635 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLP 336 (530)
Q Consensus 272 ~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~~~~ll~ 336 (530)
..+-+.+.+.++++|++|+++|.+.++.-+++|++..|.+.+|+++.||.||+.++......++.
T Consensus 255 ~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~~~ 319 (478)
T KOG1336|consen 255 PSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTSFLE 319 (478)
T ss_pred HHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeecccccccccc
Confidence 45667788889999999999999999998888999999999999999999999999877666654
No 279
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.97 E-value=1.1e-05 Score=86.56 Aligned_cols=42 Identities=21% Similarity=0.369 Sum_probs=37.0
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCce
Q 009635 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGK 95 (530)
Q Consensus 54 ~~~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~ 95 (530)
.+..++|+|||||+|||+||++|++.|++|+|+|+....|+.
T Consensus 380 ~~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~ 421 (1028)
T PRK06567 380 EPTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLP 421 (1028)
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccc
Confidence 346779999999999999999999999999999998765553
No 280
>PRK13748 putative mercuric reductase; Provisional
Probab=97.97 E-value=7.5e-06 Score=86.29 Aligned_cols=57 Identities=16% Similarity=0.165 Sum_probs=44.0
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHHHh
Q 009635 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILK 332 (530)
Q Consensus 273 ~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~~~ 332 (530)
.+...+.+.+++.|++|++++.|++|..+ ++.+ .+.+.++ ++.+|.||+|++.....
T Consensus 311 ~~~~~l~~~l~~~gI~i~~~~~v~~i~~~-~~~~-~v~~~~~-~i~~D~vi~a~G~~pn~ 367 (561)
T PRK13748 311 AIGEAVTAAFRAEGIEVLEHTQASQVAHV-DGEF-VLTTGHG-ELRADKLLVATGRAPNT 367 (561)
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCEE-EEEecCC-eEEeCEEEEccCCCcCC
Confidence 45667778888899999999999999864 3433 4666666 79999999999875433
No 281
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.96 E-value=1.3e-05 Score=85.38 Aligned_cols=42 Identities=40% Similarity=0.626 Sum_probs=39.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceee
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~ 97 (530)
..++|+|||||++||++|+.|++.|++|+|+|+++.+||.+.
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~ 233 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMR 233 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence 457999999999999999999999999999999999999874
No 282
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.96 E-value=1e-05 Score=79.45 Aligned_cols=37 Identities=41% Similarity=0.359 Sum_probs=33.6
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccC
Q 009635 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLG 93 (530)
Q Consensus 57 ~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~G 93 (530)
..||+|||||++|+.+|+.|++.|++|+|+|+++...
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~ 38 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKK 38 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccC
Confidence 3599999999999999999999999999999876543
No 283
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.92 E-value=9.1e-05 Score=73.91 Aligned_cols=51 Identities=25% Similarity=0.366 Sum_probs=39.9
Q ss_pred HHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHH
Q 009635 278 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (530)
Q Consensus 278 l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (530)
+.+.+++.|++++++++|++|..++++ ..|++.+|+++.+|.||+|++...
T Consensus 189 l~~~l~~~gV~i~~~~~v~~i~~~~~~--~~v~~~~g~~i~~D~vI~a~G~~p 239 (377)
T PRK04965 189 LQHRLTEMGVHLLLKSQLQGLEKTDSG--IRATLDSGRSIEVDAVIAAAGLRP 239 (377)
T ss_pred HHHHHHhCCCEEEECCeEEEEEccCCE--EEEEEcCCcEEECCEEEECcCCCc
Confidence 344556678999999999999864332 357788898999999999998654
No 284
>PRK06370 mercuric reductase; Validated
Probab=97.89 E-value=0.00019 Score=73.72 Aligned_cols=35 Identities=29% Similarity=0.441 Sum_probs=31.8
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcc
Q 009635 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (530)
Q Consensus 57 ~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~ 91 (530)
..+|+|||||..|+-+|..|++.|.+|+|+|+.+.
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~ 205 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPR 205 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCC
Confidence 35999999999999999999999999999998644
No 285
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.85 E-value=2.1e-05 Score=78.87 Aligned_cols=43 Identities=37% Similarity=0.493 Sum_probs=40.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceeee
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~ 98 (530)
...+|+|||||++||+||+.|++.|++|+|+|+.+..||.+.-
T Consensus 122 tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~y 164 (457)
T COG0493 122 TGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLY 164 (457)
T ss_pred CCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEe
Confidence 3479999999999999999999999999999999999998764
No 286
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.83 E-value=2.7e-05 Score=79.99 Aligned_cols=43 Identities=37% Similarity=0.536 Sum_probs=39.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceeee
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~ 98 (530)
...+|+|||||++|+++|..|++.|++|+|+|+.+.+||.+..
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~ 184 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMY 184 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeec
Confidence 4479999999999999999999999999999999999987753
No 287
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=97.83 E-value=0.00072 Score=61.81 Aligned_cols=185 Identities=14% Similarity=0.089 Sum_probs=93.7
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHHHhhhCCccccccHHHHHHhcc
Q 009635 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKL 351 (530)
Q Consensus 272 ~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~~~~ll~~~~~~~~~~~~l~~~ 351 (530)
.+++.-|.+.+.++|+++. ..+|+++.. + .+ -.+|.||.|++.+. ..|..+...
T Consensus 151 ~~ylpyl~k~l~e~Gvef~-~r~v~~l~E--------~--~~---~~~DVivNCtGL~a-~~L~gDd~~----------- 204 (342)
T KOG3923|consen 151 PKYLPYLKKRLTENGVEFV-QRRVESLEE--------V--AR---PEYDVIVNCTGLGA-GKLAGDDDL----------- 204 (342)
T ss_pred hhhhHHHHHHHHhcCcEEE-EeeeccHHH--------h--cc---CCCcEEEECCcccc-ccccCCcce-----------
Confidence 4677789999999999985 446766642 1 11 35899999999997 777766421
Q ss_pred CCccEEEEEEEeccccccccCccccccCCcceeeeccCcccccccCCCccEEEEEeeCccccCCCChhHHHHHHHHHHHH
Q 009635 352 VGVPVINIHIWFDRKLKNTYDHLLFSRSSLLSVYADMSLTCKEYYNPNQSMLELVFAPAEEWISCSDSEIIDATMKELAK 431 (530)
Q Consensus 352 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~~~~~~~~~~~~~~~e~~~~~~~~~l~~ 431 (530)
.++-...+..+.||-+++ ++ .|.+.. -.-|...+|+....--...|...-..+=...+++...+
T Consensus 205 --yPiRGqVl~V~ApWvkhf---~~---------~D~~~t--y~iP~~~~V~lGg~~Q~g~w~~ei~~~D~~dIl~rc~a 268 (342)
T KOG3923|consen 205 --YPIRGQVLKVDAPWVKHF---IY---------RDFSRT--YIIPGTESVTLGGTKQEGNWNLEITDEDRRDILERCCA 268 (342)
T ss_pred --eeccceEEEeeCCceeEE---EE---------ecCCcc--EEecCCceEEEccccccCcccCcCChhhHHHHHHHHHH
Confidence 233334455566654432 11 121110 00123334443322223456433233334456666677
Q ss_pred hCCCCcccccccceEEEEEEeecCCceeecCCCCCCCC--CCCCCC-CCceEEecccccCCCCCcHHHHHHHHHHHHHHH
Q 009635 432 LFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCR--PLQRSP-VEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAI 508 (530)
Q Consensus 432 ~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~--~~~~~~-~~~l~~aG~~~~~~~~~~i~gA~~sg~~aA~~v 508 (530)
..|....+ .++... + +..|+-...+ ...++. -.++-.+..+-+.+ .++.-+.-+|..||+-+
T Consensus 269 L~P~l~~a-----~ii~E~-v-------GlRP~Rk~vRlE~e~~~~~~k~~~VVHnYGHgG--~G~Tl~wGtAlea~~Lv 333 (342)
T KOG3923|consen 269 LEPSLRHA-----EIIREW-V-------GLRPGRKQVRLEAELRTRGGKRLTVVHNYGHGG--NGFTLGWGTALEAAKLV 333 (342)
T ss_pred hCcccccc-----eehhhh-h-------cccCCCCceeeeeeeecCCCccceeEeeccCCC--CceecccchHHHHHHHH
Confidence 77764332 233221 1 2233211111 111222 12333344443433 35666666788888888
Q ss_pred HHhhh
Q 009635 509 VQDYV 513 (530)
Q Consensus 509 l~~~~ 513 (530)
++.++
T Consensus 334 ~~~l~ 338 (342)
T KOG3923|consen 334 LDALG 338 (342)
T ss_pred HHHhh
Confidence 87754
No 288
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.00012 Score=63.72 Aligned_cols=62 Identities=21% Similarity=0.326 Sum_probs=44.5
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHHHhhhCCcc
Q 009635 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPEN 338 (530)
Q Consensus 273 ~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~~~~ll~~~ 338 (530)
.|++.|.+...+.|.+|.+.+ |.++..+. +...|.|..+ .+.||.||+||++..-+..+|..
T Consensus 71 ~l~d~mrkqs~r~Gt~i~tEt-Vskv~~ss--kpF~l~td~~-~v~~~avI~atGAsAkRl~~pg~ 132 (322)
T KOG0404|consen 71 ELMDKMRKQSERFGTEIITET-VSKVDLSS--KPFKLWTDAR-PVTADAVILATGASAKRLHLPGE 132 (322)
T ss_pred HHHHHHHHHHHhhcceeeeee-hhhccccC--CCeEEEecCC-ceeeeeEEEecccceeeeecCCC
Confidence 344557777777889998775 99998743 3334667666 79999999999998733335554
No 289
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.82 E-value=0.0002 Score=73.71 Aligned_cols=34 Identities=41% Similarity=0.538 Sum_probs=31.3
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCcEEEEecCcc
Q 009635 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~ 91 (530)
.+|+|||||.+|+.+|..|++.|.+|+|+|+.++
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~ 214 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADR 214 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCc
Confidence 5999999999999999999999999999998643
No 290
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.82 E-value=2.2e-05 Score=80.48 Aligned_cols=58 Identities=22% Similarity=0.323 Sum_probs=45.5
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHH
Q 009635 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (530)
Q Consensus 272 ~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (530)
..+.+.+.+.|+++|+++++++.|++|..++++. ..|++.+|+++.+|.||+|++...
T Consensus 231 ~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~-~~v~~~~g~~i~~D~vl~a~G~~P 288 (486)
T TIGR01423 231 STLRKELTKQLRANGINIMTNENPAKVTLNADGS-KHVTFESGKTLDVDVVMMAIGRVP 288 (486)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCce-EEEEEcCCCEEEcCEEEEeeCCCc
Confidence 4556778888888999999999999998643442 346666777899999999998654
No 291
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.81 E-value=2.2e-05 Score=77.65 Aligned_cols=37 Identities=38% Similarity=0.366 Sum_probs=33.5
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCc
Q 009635 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGG 94 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG 94 (530)
.||+|||||++|+.||+.|++.|++|+|+|+++..+-
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~ 37 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLT 37 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccC
Confidence 3899999999999999999999999999998876543
No 292
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.79 E-value=2.7e-05 Score=70.13 Aligned_cols=33 Identities=48% Similarity=0.581 Sum_probs=30.7
Q ss_pred eEEEECCChHHHHHHHHHHHCCCcEEEEecCcc
Q 009635 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (530)
Q Consensus 59 dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~ 91 (530)
||+|||||++|++||..|++.|.+|+|+|+...
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~ 33 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPG 33 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 799999999999999999999999999987644
No 293
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.79 E-value=0.00032 Score=72.05 Aligned_cols=34 Identities=24% Similarity=0.393 Sum_probs=31.2
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCcEEEEecCcc
Q 009635 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~ 91 (530)
.+|+|||+|.+|+-+|..|++.|.+|+|+|+.++
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 200 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDR 200 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCc
Confidence 5899999999999999999999999999997643
No 294
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.74 E-value=3.7e-05 Score=81.25 Aligned_cols=43 Identities=37% Similarity=0.559 Sum_probs=39.9
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceee
Q 009635 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (530)
Q Consensus 55 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~ 97 (530)
...++|+|||+|++||+||-.|-|.|+.|+|+|+.+|+||-..
T Consensus 1783 rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ 1825 (2142)
T KOG0399|consen 1783 RTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLM 1825 (2142)
T ss_pred ccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceee
Confidence 3457999999999999999999999999999999999999765
No 295
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.74 E-value=5.4e-05 Score=74.69 Aligned_cols=43 Identities=37% Similarity=0.423 Sum_probs=39.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceeee
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~~ 98 (530)
...+|+|||||++|+++|..|++.|++|+|+|+.+.+||.+..
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~ 59 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLF 59 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeee
Confidence 4469999999999999999999999999999999999987653
No 296
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.74 E-value=0.00037 Score=71.51 Aligned_cols=51 Identities=27% Similarity=0.339 Sum_probs=39.3
Q ss_pred HHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHH
Q 009635 278 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (530)
Q Consensus 278 l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (530)
+.+.++++|+++++++.|++|..++++ + .|.+.+|+++.+|.||+|++...
T Consensus 224 l~~~L~~~gV~i~~~~~v~~v~~~~~~-~-~v~~~~g~~l~~D~vl~a~G~~p 274 (466)
T PRK07845 224 LEEVFARRGMTVLKRSRAESVERTGDG-V-VVTLTDGRTVEGSHALMAVGSVP 274 (466)
T ss_pred HHHHHHHCCcEEEcCCEEEEEEEeCCE-E-EEEECCCcEEEecEEEEeecCCc
Confidence 344556678999999999999864333 3 46677888899999999998654
No 297
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.72 E-value=0.00039 Score=71.12 Aligned_cols=50 Identities=24% Similarity=0.327 Sum_probs=37.5
Q ss_pred HHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHH
Q 009635 278 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (530)
Q Consensus 278 l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (530)
+.+.++++|++++++++|++|.. ++.+..+.+.++ ++.+|.||+|+|...
T Consensus 197 l~~~l~~~gI~v~~~~~v~~i~~--~~~~~~v~~~~~-~i~~d~vi~a~G~~p 246 (444)
T PRK09564 197 MEEELRENGVELHLNEFVKSLIG--EDKVEGVVTDKG-EYEADVVIVATGVKP 246 (444)
T ss_pred HHHHHHHCCCEEEcCCEEEEEec--CCcEEEEEeCCC-EEEcCEEEECcCCCc
Confidence 44455667899999999999964 344445666555 799999999998753
No 298
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.71 E-value=1.2e-05 Score=69.12 Aligned_cols=65 Identities=31% Similarity=0.375 Sum_probs=47.2
Q ss_pred CCeEEEECCChHHHHHHHHHHHC--CCcEEEEecCcccCceeeeeecCCCCEEeeeeceecCCc--chHHHHHHHcCCCC
Q 009635 57 PLKVVIAGAGLAGLSTAKYLADA--GHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAY--PNIQNLFGELGIND 132 (530)
Q Consensus 57 ~~dVvIIGaG~aGl~aA~~L~~~--G~~V~vlEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~--~~~~~l~~~lg~~~ 132 (530)
..||+|||||-+||++||.++++ ..+|.|+|++-.+||-.. +|++.|.... ....-+++++|++.
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaW-----------LGGQLFSAMvvRKPAhLFL~EigvpY 144 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAW-----------LGGQLFSAMVVRKPAHLFLQEIGVPY 144 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCccc-----------ccchhhhhhhhcChHHHHHHHhCCCc
Confidence 46999999999999999999975 578999999988877543 4555543221 11334567888763
No 299
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.71 E-value=4.1e-05 Score=80.71 Aligned_cols=42 Identities=26% Similarity=0.454 Sum_probs=37.9
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCcEEEEecC-cccCceeee
Q 009635 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR-DVLGGKIAA 98 (530)
Q Consensus 57 ~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~-~~~GG~~~~ 98 (530)
++||+|||||.+|..||..+++.|.+|+|+|+. ..+||.|-.
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn 158 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVN 158 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeE
Confidence 689999999999999999999999999999974 468887755
No 300
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.65 E-value=0.00037 Score=70.50 Aligned_cols=38 Identities=50% Similarity=0.718 Sum_probs=35.6
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCc
Q 009635 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGG 94 (530)
Q Consensus 57 ~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG 94 (530)
..+++|||+|..|+.+|..|+++|++|+++|+.++++|
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~ 173 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGG 173 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccch
Confidence 57999999999999999999999999999999887665
No 301
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.65 E-value=0.00044 Score=70.59 Aligned_cols=50 Identities=24% Similarity=0.357 Sum_probs=38.8
Q ss_pred HHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHH
Q 009635 279 VEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (530)
Q Consensus 279 ~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (530)
.+.+.++|+++++++.|++|...+++ ..|++.+|+++.+|.||+|++...
T Consensus 214 ~~~l~~~gV~i~~~~~v~~i~~~~~~--~~v~~~~g~~i~~D~viva~G~~p 263 (446)
T TIGR01424 214 ARNMEGRGIRIHPQTSLTSITKTDDG--LKVTLSHGEEIVADVVLFATGRSP 263 (446)
T ss_pred HHHHHHCCCEEEeCCEEEEEEEcCCe--EEEEEcCCcEeecCEEEEeeCCCc
Confidence 34456678999999999999864444 246677888899999999998653
No 302
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.65 E-value=0.00019 Score=69.53 Aligned_cols=41 Identities=34% Similarity=0.511 Sum_probs=35.0
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCcEEEEecC-cccCce
Q 009635 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR-DVLGGK 95 (530)
Q Consensus 55 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~-~~~GG~ 95 (530)
...+||||||||-||.-||...++.|.+.++|-.+ +.+|-.
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~m 67 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEM 67 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeeccccccccc
Confidence 57899999999999999999999999998888765 455543
No 303
>PRK13984 putative oxidoreductase; Provisional
Probab=97.65 E-value=8e-05 Score=79.12 Aligned_cols=43 Identities=40% Similarity=0.518 Sum_probs=39.6
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCceee
Q 009635 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (530)
Q Consensus 55 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~~~ 97 (530)
....+|+|||+|++|+++|+.|++.|++|+|+|+.+.+||...
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~ 323 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMR 323 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEe
Confidence 4567999999999999999999999999999999999999765
No 304
>PLN02507 glutathione reductase
Probab=97.64 E-value=0.0005 Score=71.00 Aligned_cols=51 Identities=14% Similarity=0.283 Sum_probs=39.4
Q ss_pred HHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHH
Q 009635 278 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (530)
Q Consensus 278 l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (530)
+.+.++++|++|++++.|++|..++++ +.|++.+|+++.+|.||+|++...
T Consensus 250 l~~~l~~~GI~i~~~~~V~~i~~~~~~--~~v~~~~g~~i~~D~vl~a~G~~p 300 (499)
T PLN02507 250 VARNLEGRGINLHPRTNLTQLTKTEGG--IKVITDHGEEFVADVVLFATGRAP 300 (499)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEeCCe--EEEEECCCcEEEcCEEEEeecCCC
Confidence 344456678999999999999864333 346777888899999999998654
No 305
>PRK07846 mycothione reductase; Reviewed
Probab=97.64 E-value=0.00083 Score=68.57 Aligned_cols=49 Identities=20% Similarity=0.190 Sum_probs=37.2
Q ss_pred cCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHHHhhhC
Q 009635 285 LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQL 335 (530)
Q Consensus 285 ~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~~~~ll 335 (530)
.|+++++++.|++|+.+ ++. +.|++.+|+++.+|.||+|++...-..++
T Consensus 219 ~~v~i~~~~~v~~i~~~-~~~-v~v~~~~g~~i~~D~vl~a~G~~pn~~~l 267 (451)
T PRK07846 219 KRWDVRLGRNVVGVSQD-GSG-VTLRLDDGSTVEADVLLVATGRVPNGDLL 267 (451)
T ss_pred cCeEEEeCCEEEEEEEc-CCE-EEEEECCCcEeecCEEEEEECCccCcccc
Confidence 46899999999999863 332 34677788889999999999876534443
No 306
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.64 E-value=0.0006 Score=70.02 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=30.8
Q ss_pred CCeEEEECCChHHHHHHHHHHH---CCCcEEEEecCcccC
Q 009635 57 PLKVVIAGAGLAGLSTAKYLAD---AGHKPLLLEARDVLG 93 (530)
Q Consensus 57 ~~dVvIIGaG~aGl~aA~~L~~---~G~~V~vlEa~~~~G 93 (530)
..+|+|||||..|+-.|..+.. .|.+|+|+|+.+++.
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il 226 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL 226 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc
Confidence 3589999999999999977654 399999999876643
No 307
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.61 E-value=0.00082 Score=68.87 Aligned_cols=33 Identities=24% Similarity=0.380 Sum_probs=30.6
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCcEEEEecCc
Q 009635 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~ 90 (530)
.+++|||||.+|+-+|..|.+.|.+|+|+|+.+
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~ 203 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAP 203 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 489999999999999999999999999999864
No 308
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.61 E-value=0.00063 Score=69.14 Aligned_cols=48 Identities=29% Similarity=0.384 Sum_probs=36.9
Q ss_pred HHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHH
Q 009635 279 VEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (530)
Q Consensus 279 ~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (530)
.+.++++|+++++++.|++|.. ++.+ +.+.+|+++.+|.||+|+|...
T Consensus 186 ~~~l~~~gV~v~~~~~v~~i~~--~~~~--v~~~~g~~i~~D~vi~a~G~~p 233 (427)
T TIGR03385 186 EEELKKHEINLRLNEEVDSIEG--EERV--KVFTSGGVYQADMVILATGIKP 233 (427)
T ss_pred HHHHHHcCCEEEeCCEEEEEec--CCCE--EEEcCCCEEEeCEEEECCCccC
Confidence 3445567899999999999974 3333 4566788999999999998753
No 309
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.60 E-value=0.00056 Score=71.79 Aligned_cols=60 Identities=20% Similarity=0.120 Sum_probs=50.0
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEE---cCCc--EEecCEEEEccChHH
Q 009635 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 330 (530)
Q Consensus 271 ~~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~---~~G~--~i~ad~VI~a~~~~~ 330 (530)
...|+..|.+.+.+.|++|+.++.++++..+++|++++|.. .+|+ .|.|+.||+||+...
T Consensus 125 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 189 (570)
T PRK05675 125 GHALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAG 189 (570)
T ss_pred HHHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCcc
Confidence 36788899998888899999999999999765788888875 3564 578999999998754
No 310
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.60 E-value=6.7e-05 Score=77.06 Aligned_cols=60 Identities=15% Similarity=0.089 Sum_probs=43.8
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCC---cEEecCEEEEccChHHHhh
Q 009635 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG---NVIDGDAYVFATPVDILKL 333 (530)
Q Consensus 272 ~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G---~~i~ad~VI~a~~~~~~~~ 333 (530)
..+.+.+.+.|+++|++|++++.+++|...+++ +.|+..+| +++.+|.||+|++......
T Consensus 220 ~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~--~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~ 282 (484)
T TIGR01438 220 QDCANKVGEHMEEHGVKFKRQFVPIKVEQIEAK--VKVTFTDSTNGIEEEYDTVLLAIGRDACTR 282 (484)
T ss_pred HHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCe--EEEEEecCCcceEEEeCEEEEEecCCcCCC
Confidence 345667778888899999999999999864332 23555444 3799999999998654333
No 311
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=97.59 E-value=0.00048 Score=67.44 Aligned_cols=56 Identities=18% Similarity=0.176 Sum_probs=44.8
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCC-cEEecCEEEEccChHH
Q 009635 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-NVIDGDAYVFATPVDI 330 (530)
Q Consensus 271 ~~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G-~~i~ad~VI~a~~~~~ 330 (530)
...+++.|...+++.||+|+++++|++|. +++ ..|.+..+ +++.||+||+||+..+
T Consensus 85 A~sVv~~L~~~l~~~gV~i~~~~~V~~i~--~~~--~~v~~~~~~~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 85 AAPLLRAWLKRLAEQGVQFHTRHRWIGWQ--GGT--LRFETPDGQSTIEADAVVLALGGAS 141 (376)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEEe--CCc--EEEEECCCceEEecCEEEEcCCCcc
Confidence 46788999999999999999999999993 333 35776543 4699999999998643
No 312
>PTZ00058 glutathione reductase; Provisional
Probab=97.58 E-value=0.00079 Score=70.05 Aligned_cols=34 Identities=15% Similarity=0.330 Sum_probs=31.3
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCcEEEEecCc
Q 009635 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (530)
Q Consensus 57 ~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~ 90 (530)
..+|+|||||..|+-.|..|++.|.+|+|+|+.+
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~ 270 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGN 270 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecc
Confidence 4589999999999999999999999999999754
No 313
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.54 E-value=8.7e-05 Score=80.61 Aligned_cols=34 Identities=26% Similarity=0.367 Sum_probs=31.6
Q ss_pred CeEEEECCChHHHHHHHHHHHC--CCcEEEEecCcc
Q 009635 58 LKVVIAGAGLAGLSTAKYLADA--GHKPLLLEARDV 91 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~--G~~V~vlEa~~~ 91 (530)
++|+|||||++||++|..|++. |++|+|+|++..
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 4899999999999999999998 899999999764
No 314
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.47 E-value=0.001 Score=68.47 Aligned_cols=33 Identities=30% Similarity=0.424 Sum_probs=30.8
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCcEEEEecCc
Q 009635 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~ 90 (530)
.+|+|||+|.+|+.+|..|.+.|.+|+|+|+++
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~ 216 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALP 216 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 589999999999999999999999999999864
No 315
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=97.44 E-value=0.00021 Score=67.45 Aligned_cols=43 Identities=28% Similarity=0.283 Sum_probs=38.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHHC--CCcEEEEecCcccCceeee
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADA--GHKPLLLEARDVLGGKIAA 98 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~--G~~V~vlEa~~~~GG~~~~ 98 (530)
.++.|.|||+|+||+.+|++|.++ +.+|.|+|+.+.+.|-.+.
T Consensus 19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRy 63 (468)
T KOG1800|consen 19 STPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRY 63 (468)
T ss_pred CCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeee
Confidence 445999999999999999999995 6899999999999997764
No 316
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.41 E-value=0.00065 Score=66.20 Aligned_cols=36 Identities=33% Similarity=0.401 Sum_probs=27.2
Q ss_pred CCeEEEECCChHHHHHHHHHHHCC-CcEEEEecCccc
Q 009635 57 PLKVVIAGAGLAGLSTAKYLADAG-HKPLLLEARDVL 92 (530)
Q Consensus 57 ~~dVvIIGaG~aGl~aA~~L~~~G-~~V~vlEa~~~~ 92 (530)
.+|+|+||.|+++|+.|..|.+.+ .+++.||+++.+
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f 38 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSF 38 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS-
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence 479999999999999999999885 899999987654
No 317
>PRK14727 putative mercuric reductase; Provisional
Probab=97.39 E-value=0.0014 Score=67.60 Aligned_cols=53 Identities=17% Similarity=0.206 Sum_probs=39.3
Q ss_pred HHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHHHhh
Q 009635 278 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL 333 (530)
Q Consensus 278 l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~~~~ 333 (530)
+.+.+++.|++|++++.|++|..++++ +.+.+.+| ++.+|.||+|++...-..
T Consensus 234 l~~~L~~~GV~i~~~~~V~~i~~~~~~--~~v~~~~g-~i~aD~VlvA~G~~pn~~ 286 (479)
T PRK14727 234 LTACFEKEGIEVLNNTQASLVEHDDNG--FVLTTGHG-ELRAEKLLISTGRHANTH 286 (479)
T ss_pred HHHHHHhCCCEEEcCcEEEEEEEeCCE--EEEEEcCC-eEEeCEEEEccCCCCCcc
Confidence 344556678999999999999864333 34666666 699999999998865333
No 318
>PRK14694 putative mercuric reductase; Provisional
Probab=97.35 E-value=0.0015 Score=67.20 Aligned_cols=54 Identities=15% Similarity=0.120 Sum_probs=39.0
Q ss_pred HHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHHHhhh
Q 009635 278 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQ 334 (530)
Q Consensus 278 l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~~~~l 334 (530)
+.+.++++|+++++++.|++|..+ ++. +.+.+.++ ++.+|.||+|++......+
T Consensus 224 l~~~l~~~GI~v~~~~~v~~i~~~-~~~-~~v~~~~~-~i~~D~vi~a~G~~pn~~~ 277 (468)
T PRK14694 224 IEAAFRREGIEVLKQTQASEVDYN-GRE-FILETNAG-TLRAEQLLVATGRTPNTEN 277 (468)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEc-CCE-EEEEECCC-EEEeCEEEEccCCCCCcCC
Confidence 344556678999999999999863 332 34666555 7999999999987653433
No 319
>PRK13748 putative mercuric reductase; Provisional
Probab=97.32 E-value=0.0019 Score=68.18 Aligned_cols=32 Identities=22% Similarity=0.362 Sum_probs=30.3
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 009635 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~ 89 (530)
.+|+|||||..|+-.|..|.+.|.+|+|+++.
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~ 302 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTILARS 302 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecC
Confidence 58999999999999999999999999999974
No 320
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.30 E-value=0.00023 Score=73.93 Aligned_cols=36 Identities=42% Similarity=0.484 Sum_probs=33.5
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCc
Q 009635 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (530)
Q Consensus 55 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~ 90 (530)
..++|+||||+|.+|...|..|++.|.+|+|||+..
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 468999999999999999999998899999999973
No 321
>PLN02546 glutathione reductase
Probab=97.30 E-value=0.0024 Score=66.61 Aligned_cols=55 Identities=22% Similarity=0.197 Sum_probs=38.9
Q ss_pred HHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHHHhh
Q 009635 278 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL 333 (530)
Q Consensus 278 l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~~~~ 333 (530)
+.+.++++|++|++++.|.+|...+++.+ .+.+.+++.+.+|.||+|++......
T Consensus 299 l~~~L~~~GV~i~~~~~v~~i~~~~~g~v-~v~~~~g~~~~~D~Viva~G~~Pnt~ 353 (558)
T PLN02546 299 VAEQMSLRGIEFHTEESPQAIIKSADGSL-SLKTNKGTVEGFSHVMFATGRKPNTK 353 (558)
T ss_pred HHHHHHHCCcEEEeCCEEEEEEEcCCCEE-EEEECCeEEEecCEEEEeeccccCCC
Confidence 34455667999999999999986444533 46666664445899999998755333
No 322
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.00061 Score=63.49 Aligned_cols=66 Identities=21% Similarity=0.343 Sum_probs=44.6
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEec-CCCCEEEEEEcCCcEEecCEEEEccChHHHhhhCCcc
Q 009635 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELN-DDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPEN 338 (530)
Q Consensus 273 ~l~~~l~~~l~~~g~~i~~~t~V~~I~~~-~~g~~~~v~~~~G~~i~ad~VI~a~~~~~~~~ll~~~ 338 (530)
+|..+|.++.++..++++.-.+++++... ..+....|++.+|-...++-||++|++.--..-+|.+
T Consensus 267 kl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWRn~nvPGE 333 (520)
T COG3634 267 KLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWRNMNVPGE 333 (520)
T ss_pred HHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcchhcCCCCch
Confidence 34445566666666777666777777752 1233457999999999999999999985423335554
No 323
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.27 E-value=0.0025 Score=65.50 Aligned_cols=34 Identities=21% Similarity=0.374 Sum_probs=31.4
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCcEEEEecCcc
Q 009635 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~ 91 (530)
.+++|||||..|+-.|..|.+.|.+|+|+|+.++
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~ 208 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQ 208 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCC
Confidence 5899999999999999999999999999998644
No 324
>PLN02785 Protein HOTHEAD
Probab=97.27 E-value=0.00044 Score=72.44 Aligned_cols=38 Identities=26% Similarity=0.371 Sum_probs=33.6
Q ss_pred CCCCCCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCc
Q 009635 52 PRPSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (530)
Q Consensus 52 ~~~~~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~ 90 (530)
......+|+||||||.+|+.+|..|++ +.+|+|||+..
T Consensus 50 ~~~~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~ 87 (587)
T PLN02785 50 SGGDSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGG 87 (587)
T ss_pred ccccccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCC
Confidence 334567999999999999999999999 68999999964
No 325
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.26 E-value=0.0029 Score=64.68 Aligned_cols=49 Identities=24% Similarity=0.295 Sum_probs=37.1
Q ss_pred cCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHHHhhhC
Q 009635 285 LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQL 335 (530)
Q Consensus 285 ~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~~~~ll 335 (530)
.|+++++++.|++|..++++ +.|++.+|+++.+|.||+|++...-..++
T Consensus 222 ~gI~i~~~~~V~~i~~~~~~--v~v~~~~g~~i~~D~vl~a~G~~pn~~~l 270 (452)
T TIGR03452 222 KKWDIRLGRNVTAVEQDGDG--VTLTLDDGSTVTADVLLVATGRVPNGDLL 270 (452)
T ss_pred cCCEEEeCCEEEEEEEcCCe--EEEEEcCCCEEEcCEEEEeeccCcCCCCc
Confidence 46899999999999864333 34667778889999999999875534443
No 326
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.24 E-value=0.0025 Score=65.57 Aligned_cols=32 Identities=25% Similarity=0.351 Sum_probs=29.5
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 009635 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~ 89 (530)
.+++|||||..|+-.|..|++.|.+|+|+++.
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 212 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS 212 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence 37999999999999999999999999999863
No 327
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.17 E-value=0.0033 Score=66.58 Aligned_cols=34 Identities=21% Similarity=0.248 Sum_probs=31.3
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCcEEEEecCcc
Q 009635 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~ 91 (530)
.+|+|||||..|+-.|..|++.|.+|+|+|+.++
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ 346 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQ 346 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCc
Confidence 4899999999999999999999999999998654
No 328
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.06 E-value=0.0065 Score=62.44 Aligned_cols=35 Identities=29% Similarity=0.483 Sum_probs=31.7
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcc
Q 009635 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (530)
Q Consensus 57 ~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~ 91 (530)
..+|+|||+|.+|+-.|..|++.|.+|+|+|+.++
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 203 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDR 203 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 35899999999999999999999999999998643
No 329
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=96.73 E-value=0.015 Score=56.70 Aligned_cols=36 Identities=17% Similarity=0.164 Sum_probs=26.1
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHCCC--cEEEEecC
Q 009635 54 PSKPLKVVIAGAGLAGLSTAKYLADAGH--KPLLLEAR 89 (530)
Q Consensus 54 ~~~~~dVvIIGaG~aGl~aA~~L~~~G~--~V~vlEa~ 89 (530)
.....+|+|||||.++.-++..|.+.+. +|+++=++
T Consensus 187 ~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~ 224 (341)
T PF13434_consen 187 SLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRS 224 (341)
T ss_dssp ----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESS
T ss_pred ccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECC
Confidence 3467799999999999999999999864 68777554
No 330
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.0023 Score=59.59 Aligned_cols=59 Identities=17% Similarity=0.273 Sum_probs=43.6
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEc---CCc--EEecCEEEEccChHH
Q 009635 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NGN--VIDGDAYVFATPVDI 330 (530)
Q Consensus 271 ~~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~---~G~--~i~ad~VI~a~~~~~ 330 (530)
-+.+.+.+.++++++|+.|...+...+|+..++++. .|..+ .++ +-.+|.|+.|++-..
T Consensus 237 Dqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l-~v~~k~t~t~~~~~~~ydTVl~AiGR~~ 300 (503)
T KOG4716|consen 237 DQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKL-RVFYKNTNTGEEGEEEYDTVLWAIGRKA 300 (503)
T ss_pred cHHHHHHHHHHHHHhCCceeecccceeeeeccCCcE-EEEeecccccccccchhhhhhhhhcccc
Confidence 356777788889999999999999999998777762 34322 222 456889999998644
No 331
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=96.52 E-value=0.0074 Score=62.42 Aligned_cols=52 Identities=21% Similarity=0.302 Sum_probs=44.2
Q ss_pred HHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHH
Q 009635 277 PIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (530)
Q Consensus 277 ~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (530)
.|...+++.|+++++++.+.+|.. .+++.+|..++|..+.||-||.|++.-.
T Consensus 192 lL~~~le~~Gi~~~l~~~t~ei~g--~~~~~~vr~~DG~~i~ad~VV~a~GIrP 243 (793)
T COG1251 192 LLRRKLEDLGIKVLLEKNTEEIVG--EDKVEGVRFADGTEIPADLVVMAVGIRP 243 (793)
T ss_pred HHHHHHHhhcceeecccchhhhhc--CcceeeEeecCCCcccceeEEEeccccc
Confidence 466777888999999999999975 5667789999999999999999997643
No 332
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.51 E-value=0.0026 Score=59.05 Aligned_cols=34 Identities=38% Similarity=0.490 Sum_probs=31.6
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCcEEEEecCcc
Q 009635 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~ 91 (530)
..|.|||||.+|.-|||.++++|..|.++|-++.
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~ 37 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPV 37 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCcEEEEEcccc
Confidence 4688999999999999999999999999998855
No 333
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=96.40 E-value=0.0065 Score=61.23 Aligned_cols=39 Identities=33% Similarity=0.430 Sum_probs=34.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCc
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGG 94 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG 94 (530)
-..+++|||||+.|+-.|..+++.|.+|+|+|+.+++-.
T Consensus 172 lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp 210 (454)
T COG1249 172 LPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILP 210 (454)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCC
Confidence 345899999999999999999999999999999877543
No 334
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=96.29 E-value=0.0075 Score=60.59 Aligned_cols=38 Identities=32% Similarity=0.351 Sum_probs=34.5
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCc
Q 009635 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGG 94 (530)
Q Consensus 57 ~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG 94 (530)
..+|+|||+|..|+-+|..|++.|.+|+|+|+.+++.+
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~ 181 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMG 181 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchh
Confidence 45899999999999999999999999999999877654
No 335
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=96.29 E-value=0.0051 Score=61.35 Aligned_cols=33 Identities=24% Similarity=0.275 Sum_probs=29.2
Q ss_pred CeEEEECCChHHHHHHHHHHHC--CCcEEEEecCc
Q 009635 58 LKVVIAGAGLAGLSTAKYLADA--GHKPLLLEARD 90 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~--G~~V~vlEa~~ 90 (530)
.+|||||||++|+++|..|.+. ..+|+|+++++
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~ 37 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADS 37 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCC
Confidence 5899999999999999999886 45899999864
No 336
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.14 E-value=0.006 Score=52.28 Aligned_cols=32 Identities=38% Similarity=0.528 Sum_probs=29.9
Q ss_pred eEEEECCChHHHHHHHHHHHCCCcEEEEecCc
Q 009635 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (530)
Q Consensus 59 dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~ 90 (530)
+|+|||||..|.+.|..|+++|++|+|+.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 58999999999999999999999999998864
No 337
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.13 E-value=0.0072 Score=53.03 Aligned_cols=32 Identities=34% Similarity=0.449 Sum_probs=28.0
Q ss_pred eEEEECCChHHHHHHHHHHHCCCcEEEEecCc
Q 009635 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (530)
Q Consensus 59 dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~ 90 (530)
+|.|||||..|...|..++..|++|+++|.+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 58999999999999999999999999999863
No 338
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.09 E-value=0.12 Score=49.98 Aligned_cols=38 Identities=29% Similarity=0.368 Sum_probs=32.8
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCC-CcEEEEecCccc
Q 009635 55 SKPLKVVIAGAGLAGLSTAKYLADAG-HKPLLLEARDVL 92 (530)
Q Consensus 55 ~~~~dVvIIGaG~aGl~aA~~L~~~G-~~V~vlEa~~~~ 92 (530)
....|+|.||-|++-|+.|..|...+ .+++.||+.+..
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F 41 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF 41 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC
Confidence 35679999999999999999999874 789999997553
No 339
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=95.95 E-value=0.0072 Score=61.81 Aligned_cols=38 Identities=29% Similarity=0.368 Sum_probs=34.0
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHC-CCcEEEEecCcc
Q 009635 54 PSKPLKVVIAGAGLAGLSTAKYLADA-GHKPLLLEARDV 91 (530)
Q Consensus 54 ~~~~~dVvIIGaG~aGl~aA~~L~~~-G~~V~vlEa~~~ 91 (530)
....+|.||||||-||...|..|++. ..+|+||||...
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~ 92 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGD 92 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCC
Confidence 45789999999999999999999997 689999999644
No 340
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=95.86 E-value=0.0089 Score=52.63 Aligned_cols=34 Identities=29% Similarity=0.557 Sum_probs=27.3
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCcEEEEecCcc
Q 009635 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~ 91 (530)
++|.|||.|..||..|..|++.|++|+.+|.+..
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 5799999999999999999999999999998754
No 341
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=95.80 E-value=0.035 Score=53.41 Aligned_cols=63 Identities=24% Similarity=0.252 Sum_probs=49.4
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHHHhhhC
Q 009635 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQL 335 (530)
Q Consensus 271 ~~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~~~~ll 335 (530)
|.-|.+.-.+.+++.||.++-|..|.++.....+ + .+.+++|.+++.|.||+|++-.....|.
T Consensus 392 Peyls~wt~ekir~~GV~V~pna~v~sv~~~~~n-l-~lkL~dG~~l~tD~vVvavG~ePN~ela 454 (659)
T KOG1346|consen 392 PEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCKN-L-VLKLSDGSELRTDLVVVAVGEEPNSELA 454 (659)
T ss_pred HHHHHHHHHHHHHhcCceeccchhhhhhhhhccc-e-EEEecCCCeeeeeeEEEEecCCCchhhc
Confidence 3445556677788889999999999999874444 3 4889999999999999999876555554
No 342
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.73 E-value=0.014 Score=60.35 Aligned_cols=34 Identities=32% Similarity=0.615 Sum_probs=31.3
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCcEEEEecCc
Q 009635 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (530)
Q Consensus 57 ~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~ 90 (530)
..+|+|||+|.+|+++|..|++.|++|+++|+++
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4589999999999999999999999999999765
No 343
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=95.57 E-value=0.015 Score=56.05 Aligned_cols=34 Identities=41% Similarity=0.540 Sum_probs=30.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHHC----CCcEEEEecC
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADA----GHKPLLLEAR 89 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~----G~~V~vlEa~ 89 (530)
..+||+|||||+.|++-|..|... .++|+|+|..
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~ 72 (481)
T KOG3855|consen 35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAG 72 (481)
T ss_pred ccCCEEEECCchHHHHHHHHhccCCccchheeeEEecc
Confidence 578999999999999999999875 4689999987
No 344
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.46 E-value=0.017 Score=59.37 Aligned_cols=33 Identities=21% Similarity=0.418 Sum_probs=30.9
Q ss_pred eEEEECCChHHHHHHHHHHHCCCcEEEEecCcc
Q 009635 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (530)
Q Consensus 59 dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~ 91 (530)
+|+|||.|.+|+++|+.|.+.|++|++.|++..
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 689999999999999999999999999998754
No 345
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=95.36 E-value=0.025 Score=57.75 Aligned_cols=35 Identities=29% Similarity=0.387 Sum_probs=32.2
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCcEEEEecCccc
Q 009635 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~ 92 (530)
.+|+|||||.+|+.+|..|++.|.+|+|+|+.+++
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 192 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTI 192 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence 48999999999999999999999999999997654
No 346
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.35 E-value=0.02 Score=48.65 Aligned_cols=31 Identities=39% Similarity=0.502 Sum_probs=29.0
Q ss_pred EEEECCChHHHHHHHHHHHCCCcEEEEecCc
Q 009635 60 VVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (530)
Q Consensus 60 VvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~ 90 (530)
|+|||+|..|...|+.|++.|++|+++-++.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 6899999999999999999999999998764
No 347
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.28 E-value=0.024 Score=54.72 Aligned_cols=33 Identities=42% Similarity=0.467 Sum_probs=30.9
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCcEEEEecCc
Q 009635 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~ 90 (530)
.+|.|||+|..|.+.|..|+++|++|+++|++.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 479999999999999999999999999999874
No 348
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.22 E-value=0.027 Score=51.36 Aligned_cols=34 Identities=35% Similarity=0.672 Sum_probs=31.6
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCcEEEEecCcc
Q 009635 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~ 91 (530)
++++|||+|-.|.+.|..|.+.|++|+++|+.+.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence 4799999999999999999999999999998754
No 349
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=95.22 E-value=0.037 Score=56.89 Aligned_cols=37 Identities=38% Similarity=0.513 Sum_probs=33.8
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccC
Q 009635 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLG 93 (530)
Q Consensus 57 ~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~G 93 (530)
..+|+|||||..|+-+|..|++.|.+|+|+|+++++.
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l 211 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLL 211 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC
Confidence 4699999999999999999999999999999987654
No 350
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=95.07 E-value=0.03 Score=57.57 Aligned_cols=34 Identities=32% Similarity=0.470 Sum_probs=31.7
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCcEEEEecCcc
Q 009635 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~ 91 (530)
.+|+|||||.+|+.+|..|.+.|.+|+|+|+.+.
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 204 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDR 204 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCC
Confidence 5899999999999999999999999999998754
No 351
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=95.02 E-value=0.04 Score=47.78 Aligned_cols=34 Identities=32% Similarity=0.521 Sum_probs=29.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~ 89 (530)
....|+|+|+|.+|..||..|...|.+|+++|.+
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~ 52 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDER 52 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESS
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCC
Confidence 4579999999999999999999999999999975
No 352
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=95.01 E-value=0.066 Score=54.69 Aligned_cols=35 Identities=23% Similarity=0.261 Sum_probs=31.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCc
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~ 90 (530)
...+|+|||||..|+-+|..|.+.|.+|+|++++.
T Consensus 271 ~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 271 AGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 34699999999999999999999999999998763
No 353
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.01 E-value=0.04 Score=52.94 Aligned_cols=34 Identities=12% Similarity=0.101 Sum_probs=31.4
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCcEEEEecCc
Q 009635 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (530)
Q Consensus 57 ~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~ 90 (530)
..+|+|||+|..|...|..++..|++|+++|..+
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 4579999999999999999999999999999864
No 354
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=95.00 E-value=0.03 Score=50.27 Aligned_cols=35 Identities=31% Similarity=0.401 Sum_probs=29.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCc
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~ 90 (530)
...+|+|||+|.++.-+|..|++.|.+|+++=+++
T Consensus 166 ~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 166 KGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp TTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred CCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 44799999999999999999999999999997764
No 355
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=94.97 E-value=0.034 Score=56.86 Aligned_cols=36 Identities=28% Similarity=0.342 Sum_probs=33.2
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccC
Q 009635 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLG 93 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~G 93 (530)
.+|+|||||.+|+-.|..|++.|.+|+|+|+.+++.
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il 202 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL 202 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 599999999999999999999999999999987654
No 356
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.96 E-value=0.038 Score=52.54 Aligned_cols=34 Identities=32% Similarity=0.435 Sum_probs=31.3
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCcEEEEecCcc
Q 009635 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~ 91 (530)
.+|.|||+|..|...|..|++.|++|+++|.++.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 4899999999999999999999999999998643
No 357
>PRK12831 putative oxidoreductase; Provisional
Probab=94.85 E-value=0.074 Score=54.50 Aligned_cols=34 Identities=21% Similarity=0.279 Sum_probs=31.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~ 89 (530)
...+|+|||||.+|+-+|..|.+.|.+|+|++++
T Consensus 280 ~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~ 313 (464)
T PRK12831 280 VGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRR 313 (464)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeec
Confidence 4569999999999999999999999999999865
No 358
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.83 E-value=0.044 Score=56.32 Aligned_cols=35 Identities=29% Similarity=0.440 Sum_probs=32.0
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcc
Q 009635 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (530)
Q Consensus 57 ~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~ 91 (530)
..+|+|||||..|+-.|..|.+.|.+|+|+|+.++
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~ 208 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDR 208 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 36899999999999999999999999999998654
No 359
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=94.79 E-value=0.02 Score=51.65 Aligned_cols=34 Identities=35% Similarity=0.590 Sum_probs=28.4
Q ss_pred eEEEECCChHHHHHHHHHHHC--CCcEEEEecCccc
Q 009635 59 KVVIAGAGLAGLSTAKYLADA--GHKPLLLEARDVL 92 (530)
Q Consensus 59 dVvIIGaG~aGl~aA~~L~~~--G~~V~vlEa~~~~ 92 (530)
+.+||||||||.+||-.|+.. ..+|+++-++..+
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~v 36 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFV 36 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHH
Confidence 368999999999999999975 5689998877553
No 360
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=94.79 E-value=0.038 Score=56.34 Aligned_cols=36 Identities=28% Similarity=0.468 Sum_probs=33.3
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccC
Q 009635 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLG 93 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~G 93 (530)
.+|+|||||..|+-.|..|++.|.+|+|+|+.+++.
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~ 184 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKIN 184 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc
Confidence 589999999999999999999999999999987654
No 361
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=94.76 E-value=0.069 Score=44.37 Aligned_cols=34 Identities=32% Similarity=0.366 Sum_probs=31.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCc-EEEEecC
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHK-PLLLEAR 89 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~-V~vlEa~ 89 (530)
+..+++|||+|-+|-++++.|.+.|.+ |+|+-|+
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 567999999999999999999999986 9999875
No 362
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=94.74 E-value=0.05 Score=59.64 Aligned_cols=36 Identities=28% Similarity=0.323 Sum_probs=32.9
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCcEEEEecCccc
Q 009635 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (530)
Q Consensus 57 ~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~ 92 (530)
..+|+|||||.+|+-+|..|++.|.+|+|+|+.+++
T Consensus 140 ~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~l 175 (785)
T TIGR02374 140 FKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGL 175 (785)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCch
Confidence 358999999999999999999999999999987764
No 363
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.72 E-value=0.042 Score=56.53 Aligned_cols=34 Identities=26% Similarity=0.358 Sum_probs=31.7
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCcEEEEecCcc
Q 009635 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~ 91 (530)
.+|+|||||.+|+-+|..|++.|.+|+|+|+.++
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 206 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPR 206 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCC
Confidence 5899999999999999999999999999998755
No 364
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.67 E-value=0.043 Score=56.45 Aligned_cols=34 Identities=35% Similarity=0.424 Sum_probs=31.2
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCcEEEEecCcc
Q 009635 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~ 91 (530)
.+|+|||+|..|+-+|..|++.|.+|+|+|+.++
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~ 206 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDR 206 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 5899999999999999999999999999997643
No 365
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.57 E-value=0.051 Score=51.88 Aligned_cols=33 Identities=30% Similarity=0.347 Sum_probs=30.5
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCcEEEEecCc
Q 009635 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~ 90 (530)
.+|+|||+|..|.+.|..|++.|++|+++|.+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 479999999999999999999999999999753
No 366
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=94.56 E-value=0.064 Score=46.22 Aligned_cols=34 Identities=21% Similarity=0.234 Sum_probs=30.7
Q ss_pred CCCeEEEECCCh-HHHHHHHHHHHCCCcEEEEecC
Q 009635 56 KPLKVVIAGAGL-AGLSTAKYLADAGHKPLLLEAR 89 (530)
Q Consensus 56 ~~~dVvIIGaG~-aGl~aA~~L~~~G~~V~vlEa~ 89 (530)
...+|+|||+|- .|..+|..|.+.|.+|+|+.++
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 678999999995 6999999999999999999875
No 367
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.50 E-value=0.05 Score=51.96 Aligned_cols=33 Identities=30% Similarity=0.502 Sum_probs=30.5
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCcEEEEecCc
Q 009635 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~ 90 (530)
.+|+|||+|..|...|..|+++|++|+++|.++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 369999999999999999999999999999864
No 368
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=94.50 E-value=0.065 Score=51.85 Aligned_cols=35 Identities=29% Similarity=0.314 Sum_probs=31.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCc
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~ 90 (530)
..++|+|||+|..|...|..|++.|++|+++.++.
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 45689999999999999999999999999998753
No 369
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.40 E-value=0.057 Score=55.35 Aligned_cols=35 Identities=40% Similarity=0.709 Sum_probs=32.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCc
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~ 90 (530)
...+|+|||+|..|+++|..|++.|++|+++|.+.
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 34689999999999999999999999999999864
No 370
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=94.40 E-value=0.068 Score=47.90 Aligned_cols=33 Identities=24% Similarity=0.375 Sum_probs=30.5
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 009635 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (530)
Q Consensus 57 ~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~ 89 (530)
..+|+|||||-+|...+..|.+.|.+|+|+..+
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 459999999999999999999999999999764
No 371
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=94.38 E-value=0.069 Score=58.73 Aligned_cols=36 Identities=28% Similarity=0.434 Sum_probs=32.8
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCcEEEEecCccc
Q 009635 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (530)
Q Consensus 57 ~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~ 92 (530)
..+++|||||..|+-+|..|++.|.+|+|+|..+++
T Consensus 145 ~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~l 180 (847)
T PRK14989 145 SKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPML 180 (847)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccc
Confidence 348999999999999999999999999999988754
No 372
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=94.33 E-value=0.053 Score=52.33 Aligned_cols=33 Identities=30% Similarity=0.640 Sum_probs=30.7
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCcEEEEecCc
Q 009635 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~ 90 (530)
++|.|||+|+.||++|..|++.|++|+-+|...
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 579999999999999999999999999999764
No 373
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.26 E-value=0.064 Score=51.33 Aligned_cols=32 Identities=38% Similarity=0.336 Sum_probs=30.3
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 009635 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~ 89 (530)
.+|.|||+|..|...|..|+++|++|+++|.+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~ 36 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVS 36 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCC
Confidence 57999999999999999999999999999976
No 374
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=94.11 E-value=0.078 Score=51.01 Aligned_cols=33 Identities=33% Similarity=0.226 Sum_probs=30.7
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 009635 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (530)
Q Consensus 57 ~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~ 89 (530)
.++|+|||+|..|...|+.|++.|.+|+++.+.
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence 468999999999999999999999999999885
No 375
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=94.07 E-value=0.062 Score=49.89 Aligned_cols=35 Identities=31% Similarity=0.489 Sum_probs=32.2
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 009635 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (530)
Q Consensus 55 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~ 89 (530)
-...+|+|||+|..|.-+|..+.-.|.+|+++|.+
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n 200 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLN 200 (371)
T ss_pred CCCccEEEECCccccchHHHHHhccCCeeEEEecC
Confidence 35669999999999999999999999999999987
No 376
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.00 E-value=0.053 Score=42.62 Aligned_cols=34 Identities=26% Similarity=0.449 Sum_probs=30.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~ 89 (530)
+..+|+|||+|-.|..-+..|.+.|.+|+|+...
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 4569999999999999999999999999999876
No 377
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=93.99 E-value=0.076 Score=55.33 Aligned_cols=34 Identities=29% Similarity=0.333 Sum_probs=30.9
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCcEEEEecCc
Q 009635 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (530)
Q Consensus 57 ~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~ 90 (530)
..+|+|||||.+|+-+|..|++.|.+|+|+|+.+
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~ 385 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFAD 385 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCC
Confidence 4699999999999999999999999999998653
No 378
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=93.92 E-value=0.07 Score=47.01 Aligned_cols=39 Identities=28% Similarity=0.348 Sum_probs=34.4
Q ss_pred CCCCCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcc
Q 009635 53 RPSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (530)
Q Consensus 53 ~~~~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~ 91 (530)
.......|.|||||..|...|...+..|++|.|++++..
T Consensus 7 ~~~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~ 45 (298)
T KOG2304|consen 7 NMAEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED 45 (298)
T ss_pred ccccccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence 345677999999999999999999999999999998743
No 379
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=93.85 E-value=0.079 Score=50.68 Aligned_cols=33 Identities=18% Similarity=0.391 Sum_probs=30.6
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCcEEEEecCc
Q 009635 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~ 90 (530)
.+|.|||+|..|...|..|++.|++|+++|.++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 479999999999999999999999999999864
No 380
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=93.76 E-value=0.11 Score=46.42 Aligned_cols=34 Identities=24% Similarity=0.283 Sum_probs=30.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~ 89 (530)
....|+|||||-.|...|..|.+.|.+|+|++..
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 4569999999999999999999999999999754
No 381
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=93.75 E-value=0.18 Score=53.18 Aligned_cols=59 Identities=12% Similarity=0.077 Sum_probs=49.0
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEE---cCCc--EEecCEEEEccChHH
Q 009635 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 330 (530)
Q Consensus 271 ~~~l~~~l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~---~~G~--~i~ad~VI~a~~~~~ 330 (530)
...++..|.+.+.+.|++|+.+++|++|.. ++|++++|.. .+|+ .|.|+.||+||+...
T Consensus 118 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~-~~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~ 181 (565)
T TIGR01816 118 GHAILHTLYQQNLKADTSFFNEYFALDLLM-EDGECRGVIAYCLETGEIHRFRAKAVVLATGGYG 181 (565)
T ss_pred hHHHHHHHHHHHHhCCCEEEeccEEEEEEe-eCCEEEEEEEEEcCCCcEEEEEeCeEEECCCCcc
Confidence 357889999999889999999999999997 4788888775 3454 589999999998754
No 382
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=93.74 E-value=0.089 Score=50.71 Aligned_cols=32 Identities=41% Similarity=0.532 Sum_probs=29.7
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 009635 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~ 89 (530)
++|+|||+|..|...|..|++.|++|++++++
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 36999999999999999999999999999874
No 383
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=93.71 E-value=0.17 Score=55.46 Aligned_cols=34 Identities=21% Similarity=0.291 Sum_probs=30.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCc-EEEEecC
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHK-PLLLEAR 89 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~-V~vlEa~ 89 (530)
...+|||||||.+|+-+|..|.+.|.+ |+|++++
T Consensus 569 ~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~ 603 (752)
T PRK12778 569 FGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRR 603 (752)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeec
Confidence 456899999999999999999999987 9999875
No 384
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=93.68 E-value=0.12 Score=44.05 Aligned_cols=32 Identities=28% Similarity=0.290 Sum_probs=29.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCcEEEEe
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLE 87 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlE 87 (530)
+..+|+|||||-.|..-|..|.+.|.+|+|+.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 45789999999999999999999999999994
No 385
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=93.67 E-value=0.1 Score=46.56 Aligned_cols=35 Identities=34% Similarity=0.365 Sum_probs=31.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC-cEEEEecCc
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARD 90 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~-~V~vlEa~~ 90 (530)
...+|+|||+|..|..+|..|++.|. +|+|+|...
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ 55 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFDV 55 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 45689999999999999999999998 699999863
No 386
>PRK04148 hypothetical protein; Provisional
Probab=93.61 E-value=0.084 Score=43.22 Aligned_cols=34 Identities=24% Similarity=0.371 Sum_probs=30.7
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcc
Q 009635 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (530)
Q Consensus 57 ~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~ 91 (530)
..++++||.| .|...|..|++.|++|+.+|-++.
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 3689999999 999999999999999999998754
No 387
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.61 E-value=0.1 Score=50.21 Aligned_cols=33 Identities=36% Similarity=0.520 Sum_probs=29.6
Q ss_pred CeEEEECCChHHHHHHHHHHHCC--CcEEEEecCc
Q 009635 58 LKVVIAGAGLAGLSTAKYLADAG--HKPLLLEARD 90 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~G--~~V~vlEa~~ 90 (530)
++|.|||+|..|.++|+.|+..| ..|+++|.+.
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 47999999999999999999998 4799999863
No 388
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=93.58 E-value=0.099 Score=50.43 Aligned_cols=31 Identities=26% Similarity=0.447 Sum_probs=29.1
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCcEEEEec
Q 009635 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEA 88 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa 88 (530)
++|+|||+|..|...|..|++.|++|+++.+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 3699999999999999999999999999986
No 389
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.57 E-value=0.093 Score=49.92 Aligned_cols=33 Identities=30% Similarity=0.403 Sum_probs=30.4
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCcEEEEecCc
Q 009635 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~ 90 (530)
.+|.|||+|..|.+.|..|++.|++|+++|.+.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 479999999999999999999999999999763
No 390
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=93.52 E-value=0.096 Score=51.43 Aligned_cols=32 Identities=28% Similarity=0.368 Sum_probs=30.1
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 009635 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~ 89 (530)
++|.|||+|..|...|..|++.|++|++++++
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 57999999999999999999999999999874
No 391
>PRK10262 thioredoxin reductase; Provisional
Probab=93.50 E-value=0.11 Score=50.42 Aligned_cols=35 Identities=29% Similarity=0.489 Sum_probs=31.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCc
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~ 90 (530)
...+|+|||+|.+|+-.|..|++.|.+|+++++.+
T Consensus 145 ~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~ 179 (321)
T PRK10262 145 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD 179 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECC
Confidence 34699999999999999999999999999999864
No 392
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=93.46 E-value=0.12 Score=49.55 Aligned_cols=32 Identities=34% Similarity=0.467 Sum_probs=29.3
Q ss_pred CeEEEECCChHHHHHHHHHHHCCC-cEEEEecC
Q 009635 58 LKVVIAGAGLAGLSTAKYLADAGH-KPLLLEAR 89 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~G~-~V~vlEa~ 89 (530)
++|.|||+|..|..+|+.|+..|. +|+++|..
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~ 34 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVV 34 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 479999999999999999999876 89999974
No 393
>PRK06116 glutathione reductase; Validated
Probab=93.39 E-value=0.12 Score=53.01 Aligned_cols=36 Identities=28% Similarity=0.405 Sum_probs=32.7
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCcEEEEecCccc
Q 009635 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (530)
Q Consensus 57 ~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~ 92 (530)
..+|+|||+|.+|+-.|..|++.|.+|+++++++.+
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~ 202 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAP 202 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 358999999999999999999999999999987654
No 394
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=93.37 E-value=0.097 Score=55.04 Aligned_cols=37 Identities=19% Similarity=0.310 Sum_probs=33.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCccc
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~ 92 (530)
...+|+|||||.+|+-.|..|++.|.+|+|+++.+.+
T Consensus 142 ~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~ 178 (555)
T TIGR03143 142 TGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDF 178 (555)
T ss_pred CCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcc
Confidence 3469999999999999999999999999999987653
No 395
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=93.29 E-value=0.12 Score=52.84 Aligned_cols=36 Identities=31% Similarity=0.390 Sum_probs=32.6
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccC
Q 009635 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLG 93 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~G 93 (530)
.+|+|||+|..|+-.|..|.+.|.+|+|+|+.+.+.
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l 194 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLFL 194 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 489999999999999999999999999999876543
No 396
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=93.25 E-value=0.13 Score=49.38 Aligned_cols=33 Identities=36% Similarity=0.438 Sum_probs=30.6
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCcEEEEecCc
Q 009635 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~ 90 (530)
.+|.|||+|..|...|..|++.|++|+++|.+.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 479999999999999999999999999999763
No 397
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=93.22 E-value=0.13 Score=50.80 Aligned_cols=34 Identities=29% Similarity=0.476 Sum_probs=31.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~ 89 (530)
...+|+|||+|..|+.+|..|.+.|.+|++++++
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~ 199 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDIN 199 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECC
Confidence 3467999999999999999999999999999975
No 398
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=93.20 E-value=0.12 Score=53.81 Aligned_cols=35 Identities=29% Similarity=0.314 Sum_probs=31.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCc
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~ 90 (530)
...+|+|||||.+|+-+|..|++.+.+|+|+++.+
T Consensus 350 ~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~ 384 (517)
T PRK15317 350 KGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAP 384 (517)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECc
Confidence 34699999999999999999999999999998653
No 399
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=93.17 E-value=0.14 Score=50.58 Aligned_cols=33 Identities=33% Similarity=0.343 Sum_probs=29.8
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCc-EEEEecC
Q 009635 57 PLKVVIAGAGLAGLSTAKYLADAGHK-PLLLEAR 89 (530)
Q Consensus 57 ~~dVvIIGaG~aGl~aA~~L~~~G~~-V~vlEa~ 89 (530)
..+|+|||+|..|+-+|..|.+.|.+ |+|++++
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~ 205 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRR 205 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeec
Confidence 35899999999999999999999987 9999875
No 400
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=93.06 E-value=0.12 Score=51.95 Aligned_cols=34 Identities=21% Similarity=0.306 Sum_probs=31.3
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCcEEEEecCcc
Q 009635 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~ 91 (530)
++|.|||.|..|+..|..|++.|++|+++|.+..
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 5799999999999999999999999999997643
No 401
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=93.05 E-value=0.11 Score=52.30 Aligned_cols=33 Identities=33% Similarity=0.517 Sum_probs=30.7
Q ss_pred eEEEECCChHHHHHHHHHHHCCCcEEEEecCcc
Q 009635 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (530)
Q Consensus 59 dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~ 91 (530)
+|.|||.|..|+..|..|++.|++|++++.+..
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 699999999999999999999999999998653
No 402
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.99 E-value=0.15 Score=49.74 Aligned_cols=34 Identities=29% Similarity=0.334 Sum_probs=31.2
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCcEEEEecCc
Q 009635 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (530)
Q Consensus 57 ~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~ 90 (530)
.++|.|||+|..|...|..|++.|++|++++++.
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 4589999999999999999999999999998853
No 403
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.98 E-value=0.15 Score=49.28 Aligned_cols=34 Identities=26% Similarity=0.414 Sum_probs=30.8
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCcEEEEecCc
Q 009635 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (530)
Q Consensus 57 ~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~ 90 (530)
..+|.|||+|..|.+.|..|++.|++|+++|.+.
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 3579999999999999999999999999999753
No 404
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=92.85 E-value=0.16 Score=48.68 Aligned_cols=33 Identities=27% Similarity=0.427 Sum_probs=30.5
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 009635 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (530)
Q Consensus 57 ~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~ 89 (530)
..+|+|||+|.+|+-+|..|++.+.+|+++++.
T Consensus 141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~ 173 (300)
T TIGR01292 141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRR 173 (300)
T ss_pred CCEEEEECCChHHHHHHHHHHhhcCEEEEEEeC
Confidence 469999999999999999999999999999875
No 405
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.80 E-value=0.19 Score=48.55 Aligned_cols=35 Identities=29% Similarity=0.443 Sum_probs=31.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCc
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~ 90 (530)
+.++|.|||+|..|.+.|..|++.|++|++++++.
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 34689999999999999999999999999999864
No 406
>PTZ00052 thioredoxin reductase; Provisional
Probab=92.79 E-value=0.16 Score=52.68 Aligned_cols=32 Identities=31% Similarity=0.418 Sum_probs=29.9
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 009635 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~ 89 (530)
.+++|||||..|+-.|..|++.|.+|+|+++.
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 214 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRS 214 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence 48999999999999999999999999999864
No 407
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=92.77 E-value=0.18 Score=45.96 Aligned_cols=34 Identities=35% Similarity=0.672 Sum_probs=30.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC---cEEEEecC
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGH---KPLLLEAR 89 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~---~V~vlEa~ 89 (530)
+..+|+|+|||-+|..+|..|.+.|. +|.|++++
T Consensus 24 ~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 24 EEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred cCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 45689999999999999999999987 49999987
No 408
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=92.69 E-value=0.17 Score=52.14 Aligned_cols=35 Identities=37% Similarity=0.564 Sum_probs=31.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCc
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~ 90 (530)
+-.+|.|||+|..|...|..|++.|++|+|+|++.
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~ 38 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRA 38 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 34579999999999999999999999999999874
No 409
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=92.63 E-value=0.14 Score=51.32 Aligned_cols=36 Identities=28% Similarity=0.464 Sum_probs=33.3
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCcEEEEecCccc
Q 009635 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (530)
Q Consensus 57 ~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~ 92 (530)
.++|+|+|-|.+|++||..|.+.|.+|++.|.+...
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 679999999999999999999999999999977654
No 410
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.59 E-value=0.16 Score=52.22 Aligned_cols=35 Identities=17% Similarity=0.060 Sum_probs=31.5
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcc
Q 009635 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (530)
Q Consensus 57 ~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~ 91 (530)
..+|+|+|.|.+|.++|..|.+.|.+|++.|.+..
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~ 42 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCNA 42 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCc
Confidence 35799999999999999999999999999997543
No 411
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=92.58 E-value=0.18 Score=41.83 Aligned_cols=35 Identities=40% Similarity=0.448 Sum_probs=30.6
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCC-cEEEEecCcc
Q 009635 57 PLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDV 91 (530)
Q Consensus 57 ~~dVvIIGaG~aGl~aA~~L~~~G~-~V~vlEa~~~ 91 (530)
+.+|+|||+|-.|...|..|++.|. +++|+|....
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v 37 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIV 37 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcce
Confidence 4689999999999999999999998 6999997543
No 412
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=92.56 E-value=0.19 Score=43.26 Aligned_cols=33 Identities=27% Similarity=0.383 Sum_probs=28.8
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCcEEEEecCc
Q 009635 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~ 90 (530)
.+|.|||-|..|...|..|.++|++|++++++.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 589999999999999999999999999999763
No 413
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.55 E-value=0.16 Score=49.47 Aligned_cols=31 Identities=29% Similarity=0.245 Sum_probs=29.3
Q ss_pred eEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 009635 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (530)
Q Consensus 59 dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~ 89 (530)
+|.|||+|..|.+.|..|++.|++|+++.++
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence 6999999999999999999999999999875
No 414
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=92.54 E-value=0.13 Score=47.96 Aligned_cols=38 Identities=24% Similarity=0.388 Sum_probs=32.3
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHC-CC-cEEEEecCcc
Q 009635 54 PSKPLKVVIAGAGLAGLSTAKYLADA-GH-KPLLLEARDV 91 (530)
Q Consensus 54 ~~~~~dVvIIGaG~aGl~aA~~L~~~-G~-~V~vlEa~~~ 91 (530)
.+..+.|+|||||.+|++.|..+.+. |. +|.|+|-.+.
T Consensus 36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~ 75 (446)
T KOG3851|consen 36 ARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED 75 (446)
T ss_pred cccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh
Confidence 45788999999999999999999876 54 7999997653
No 415
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=92.43 E-value=0.26 Score=41.19 Aligned_cols=33 Identities=36% Similarity=0.549 Sum_probs=29.4
Q ss_pred CeEEEECC-ChHHHHHHHHHHHCCC--cEEEEecCc
Q 009635 58 LKVVIAGA-GLAGLSTAKYLADAGH--KPLLLEARD 90 (530)
Q Consensus 58 ~dVvIIGa-G~aGl~aA~~L~~~G~--~V~vlEa~~ 90 (530)
++|+|||+ |-.|.+.|+.|...+. +++++|.+.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 47999999 9999999999999864 799999873
No 416
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=92.41 E-value=0.18 Score=49.12 Aligned_cols=32 Identities=34% Similarity=0.454 Sum_probs=30.1
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 009635 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~ 89 (530)
++|.|||+|..|...|..|++.|++|++++++
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~ 33 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARD 33 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECC
Confidence 47999999999999999999999999999875
No 417
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=92.38 E-value=0.19 Score=51.87 Aligned_cols=36 Identities=39% Similarity=0.496 Sum_probs=32.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcc
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~ 91 (530)
+..+|.|||+|..|...|..|+++|++|+|+|.+..
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 345799999999999999999999999999997653
No 418
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=92.35 E-value=0.1 Score=51.43 Aligned_cols=60 Identities=23% Similarity=0.273 Sum_probs=41.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCC-------------CcEEEEecCcccCceeeeeecCCCCEEeeeeceecCCcchHH
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAG-------------HKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQ 122 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G-------------~~V~vlEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~ 122 (530)
...+++|||||++|.-.|-+|++.- .+|+|+|+.+++--.... .......
T Consensus 154 ~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~~~~-----------------~l~~~a~ 216 (405)
T COG1252 154 ALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFPP-----------------KLSKYAE 216 (405)
T ss_pred ceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccCCCH-----------------HHHHHHH
Confidence 3458999999999999999998631 388999988764422111 1123456
Q ss_pred HHHHHcCCCC
Q 009635 123 NLFGELGIND 132 (530)
Q Consensus 123 ~l~~~lg~~~ 132 (530)
+.++++|++.
T Consensus 217 ~~L~~~GV~v 226 (405)
T COG1252 217 RALEKLGVEV 226 (405)
T ss_pred HHHHHCCCEE
Confidence 7788888764
No 419
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.23 E-value=0.19 Score=51.55 Aligned_cols=33 Identities=24% Similarity=0.491 Sum_probs=30.7
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCcEEEEecCc
Q 009635 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~ 90 (530)
.+|+|+|.|.+|+++|..|.+.|++|++.|.++
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 489999999999999999999999999999764
No 420
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=92.20 E-value=0.2 Score=49.07 Aligned_cols=33 Identities=27% Similarity=0.408 Sum_probs=30.9
Q ss_pred CCeEEEECCChHHHHHHHHHHHCC-CcEEEEecC
Q 009635 57 PLKVVIAGAGLAGLSTAKYLADAG-HKPLLLEAR 89 (530)
Q Consensus 57 ~~dVvIIGaG~aGl~aA~~L~~~G-~~V~vlEa~ 89 (530)
+.+|+|||+|-.|..+|+.|++.| .+|+|.+++
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs 34 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS 34 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCC
Confidence 368999999999999999999998 899999997
No 421
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.17 E-value=0.25 Score=47.52 Aligned_cols=35 Identities=23% Similarity=0.393 Sum_probs=30.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC--cEEEEecCc
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGH--KPLLLEARD 90 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~--~V~vlEa~~ 90 (530)
...+|+|||+|..|.++|+.|+..|. +++|+|.+.
T Consensus 2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 45699999999999999999998875 699999754
No 422
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=92.17 E-value=0.2 Score=51.22 Aligned_cols=34 Identities=32% Similarity=0.507 Sum_probs=31.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~ 89 (530)
...+|+|||+|.+|+.++..+...|.+|+++|.+
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~ 197 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTR 197 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4679999999999999999999999999999875
No 423
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=92.08 E-value=0.34 Score=36.53 Aligned_cols=33 Identities=45% Similarity=0.578 Sum_probs=29.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHHC-CCcEEEEec
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADA-GHKPLLLEA 88 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~-G~~V~vlEa 88 (530)
...+++|+|+|..|..+|..|.+. +.+|.++++
T Consensus 22 ~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 22 KGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 556899999999999999999998 678999987
No 424
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=92.00 E-value=0.25 Score=39.64 Aligned_cols=32 Identities=28% Similarity=0.412 Sum_probs=28.4
Q ss_pred EEEECCChHHHHHHHHHHHCCCcEEEEecCcc
Q 009635 60 VVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (530)
Q Consensus 60 VvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~ 91 (530)
|+|||.|-.|...|..|.+.+.+|+++|.+..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence 79999999999999999997779999999854
No 425
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=91.99 E-value=0.24 Score=46.97 Aligned_cols=34 Identities=29% Similarity=0.344 Sum_probs=30.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC-cEEEEecC
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEAR 89 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~-~V~vlEa~ 89 (530)
...+|+|||+|-+|-++|+.|++.|. +|+|+++.
T Consensus 126 ~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~ 160 (284)
T PRK12549 126 SLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD 160 (284)
T ss_pred cCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC
Confidence 44689999999999999999999997 79999876
No 426
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=91.90 E-value=0.21 Score=49.71 Aligned_cols=32 Identities=31% Similarity=0.537 Sum_probs=28.4
Q ss_pred eEEEECCChHHHHHHHHHHHCCCcEEEEecCcc
Q 009635 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (530)
Q Consensus 59 dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~ 91 (530)
+|.|||.|..|+..|..|+. |++|+++|.+..
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~ 33 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPS 33 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHH
Confidence 69999999999999988875 999999998643
No 427
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=91.85 E-value=0.23 Score=53.74 Aligned_cols=34 Identities=21% Similarity=0.268 Sum_probs=31.5
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCcEEEEecCc
Q 009635 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (530)
Q Consensus 57 ~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~ 90 (530)
...|+|||||..|...|+.++..|++|+++|.+.
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQ 346 (715)
T ss_pred cceEEEECCchhHHHHHHHHHhCCCeEEEEeCCH
Confidence 3579999999999999999999999999999874
No 428
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=91.85 E-value=0.27 Score=45.85 Aligned_cols=36 Identities=28% Similarity=0.365 Sum_probs=32.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC-cEEEEecCcc
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDV 91 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~-~V~vlEa~~~ 91 (530)
...+|+|||+|-.|..+|..|++.|. +++|+|....
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V 65 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDV 65 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence 45699999999999999999999995 7999997644
No 429
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=91.79 E-value=0.21 Score=51.55 Aligned_cols=33 Identities=21% Similarity=0.265 Sum_probs=30.6
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCcEEEEecCc
Q 009635 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~ 90 (530)
.+|.|||+|..|...|..|++.|++|+|+|.+.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 479999999999999999999999999999763
No 430
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.79 E-value=0.24 Score=51.23 Aligned_cols=34 Identities=26% Similarity=0.448 Sum_probs=30.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~ 89 (530)
...+|+|+|.|.+|++++..|.+.|.+|++.|.+
T Consensus 11 ~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 11 PGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 3458999999999999999999999999999965
No 431
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.77 E-value=0.16 Score=47.99 Aligned_cols=36 Identities=31% Similarity=0.283 Sum_probs=30.3
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 009635 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (530)
Q Consensus 54 ~~~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~ 89 (530)
+=+.+||+|||||-+|+-||.-|+--=..|+|||=.
T Consensus 351 LF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~ 386 (520)
T COG3634 351 LFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFA 386 (520)
T ss_pred ccCCceEEEECCCcchHHHHHhHHhhhheeeeeecc
Confidence 336789999999999999999998655589999843
No 432
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=91.76 E-value=0.23 Score=50.62 Aligned_cols=33 Identities=21% Similarity=0.254 Sum_probs=29.5
Q ss_pred CeEEEECCChHHHHHHHHHHHCC--CcEEEEecCc
Q 009635 58 LKVVIAGAGLAGLSTAKYLADAG--HKPLLLEARD 90 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~G--~~V~vlEa~~ 90 (530)
++|+|||+|..|+..|..|++.| ++|+.+|.+.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~ 36 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV 36 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence 57999999999999999999984 7899999764
No 433
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=91.70 E-value=0.24 Score=46.99 Aligned_cols=33 Identities=33% Similarity=0.389 Sum_probs=30.8
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 009635 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (530)
Q Consensus 57 ~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~ 89 (530)
...|.|||||..|-..|+.++..|++|+++|.+
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~ 35 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDIS 35 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCC
Confidence 458999999999999999999988999999987
No 434
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=91.62 E-value=0.26 Score=53.30 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=31.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCc
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~ 90 (530)
+..+|.|||||..|...|+.++..|++|+++|.+.
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQ 346 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhCCCeEEEEeCCH
Confidence 44579999999999999999999999999999864
No 435
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=91.59 E-value=0.29 Score=50.18 Aligned_cols=34 Identities=21% Similarity=0.305 Sum_probs=30.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC-cEEEEecC
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEAR 89 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~-~V~vlEa~ 89 (530)
...+|+|||+|.+|+-+|..|.+.|. +|+|++++
T Consensus 272 ~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~ 306 (457)
T PRK11749 272 VGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRR 306 (457)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeec
Confidence 45699999999999999999999988 89999875
No 436
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=91.58 E-value=0.33 Score=43.41 Aligned_cols=35 Identities=23% Similarity=0.395 Sum_probs=31.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCc
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~ 90 (530)
..+.|+|+|.|-.|..+|..|.+.|.+|++.|.+.
T Consensus 27 ~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 27 EGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 45689999999999999999999999999998753
No 437
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=91.58 E-value=0.26 Score=50.04 Aligned_cols=36 Identities=36% Similarity=0.417 Sum_probs=30.8
Q ss_pred CeEEEECCChHHHHHHHHHHH--------------CCCcEEEEecCcccC
Q 009635 58 LKVVIAGAGLAGLSTAKYLAD--------------AGHKPLLLEARDVLG 93 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~--------------~G~~V~vlEa~~~~G 93 (530)
.+|+|||||.+|+-.|..|++ .+.+|+|+|+.+.+-
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll 223 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVL 223 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccc
Confidence 489999999999999999975 368899999886643
No 438
>PLN02256 arogenate dehydrogenase
Probab=91.53 E-value=0.62 Score=44.66 Aligned_cols=34 Identities=32% Similarity=0.370 Sum_probs=30.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~ 89 (530)
...+|.|||.|..|-+.|..|.+.|++|++++.+
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~ 68 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRS 68 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECc
Confidence 5568999999999999999999999999998865
No 439
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.53 E-value=0.25 Score=50.55 Aligned_cols=34 Identities=24% Similarity=0.355 Sum_probs=30.8
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCcEEEEecCc
Q 009635 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (530)
Q Consensus 57 ~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~ 90 (530)
...|+|+|+|-+|+++|..|++.|.+|++.|.+.
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 3579999999999999999999999999999753
No 440
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.43 E-value=0.29 Score=50.01 Aligned_cols=35 Identities=29% Similarity=0.407 Sum_probs=31.6
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcc
Q 009635 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (530)
Q Consensus 57 ~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~ 91 (530)
...|+|+|.|-+|+++|..|++.|++|++.|....
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 45899999999999999999999999999997654
No 441
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=91.36 E-value=0.46 Score=53.03 Aligned_cols=35 Identities=20% Similarity=0.299 Sum_probs=31.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCc
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~ 90 (530)
...+|+|||||.+|+-||..+.+.|.+|+++.++.
T Consensus 446 ~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~ 480 (944)
T PRK12779 446 KGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT 480 (944)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence 35699999999999999999999999999998764
No 442
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=91.28 E-value=0.34 Score=46.81 Aligned_cols=35 Identities=17% Similarity=0.167 Sum_probs=31.0
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCC-cEEEEecCcc
Q 009635 57 PLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDV 91 (530)
Q Consensus 57 ~~dVvIIGaG~aGl~aA~~L~~~G~-~V~vlEa~~~ 91 (530)
..+|+|||||..|.++|+.|+..|. +|+|+|.++.
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 3689999999999999999999996 8999997654
No 443
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=91.27 E-value=0.4 Score=47.51 Aligned_cols=71 Identities=15% Similarity=0.101 Sum_probs=47.1
Q ss_pred CCCCCceeeecCCCCCCccccchhhhhhhhcCCCCCCCCCCCCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcc
Q 009635 15 KGFCPSKVVCVDYPRPDIDNTSNFLEAAYLSSSFRTSPRPSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (530)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~ 91 (530)
.|..+..+++|+....+......--++.... ........|++||+|..|+-+|..|...+.+|+|++..+.
T Consensus 177 TGs~~~~l~~pG~~~~nv~~ireieda~~l~------~~~~~~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~ 247 (478)
T KOG1336|consen 177 TGSSAKTLDIPGVELKNVFYLREIEDANRLV------AAIQLGGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPW 247 (478)
T ss_pred ecCccccCCCCCccccceeeeccHHHHHHHH------HHhccCceEEEECchHHHHHHHHHHHhcCceEEEEccCcc
Confidence 3456777777777644322111111111111 1122367899999999999999999999999999998754
No 444
>PRK06223 malate dehydrogenase; Reviewed
Probab=91.22 E-value=0.33 Score=46.83 Aligned_cols=33 Identities=30% Similarity=0.366 Sum_probs=29.7
Q ss_pred CeEEEECCChHHHHHHHHHHHCCC-cEEEEecCc
Q 009635 58 LKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARD 90 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~G~-~V~vlEa~~ 90 (530)
++|+|||+|..|.+.|+.|+..|. +|+++|.+.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~ 36 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVE 36 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCC
Confidence 589999999999999999999875 899999853
No 445
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=91.14 E-value=0.36 Score=46.13 Aligned_cols=35 Identities=20% Similarity=0.311 Sum_probs=32.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCc
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~ 90 (530)
...+|+|||.|..|..+|..|.+.|.+|++++++.
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 45799999999999999999999999999998874
No 446
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=91.05 E-value=0.36 Score=43.53 Aligned_cols=35 Identities=40% Similarity=0.340 Sum_probs=31.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC-cEEEEecCc
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARD 90 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~-~V~vlEa~~ 90 (530)
...+|+|||+|-.|..+|..|++.|. +++|+|...
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 62 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV 62 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 45689999999999999999999998 499999863
No 447
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=91.04 E-value=0.27 Score=46.62 Aligned_cols=31 Identities=35% Similarity=0.392 Sum_probs=29.2
Q ss_pred eEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 009635 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (530)
Q Consensus 59 dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~ 89 (530)
+|.|||.|..|.+.|..|.+.|++|++++++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~ 32 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRR 32 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECC
Confidence 6999999999999999999999999999875
No 448
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=90.98 E-value=0.33 Score=47.22 Aligned_cols=35 Identities=31% Similarity=0.405 Sum_probs=31.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC-cEEEEecCc
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARD 90 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~-~V~vlEa~~ 90 (530)
...+|+|||+|-.|..+|..|++.|. +++|+|...
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 45689999999999999999999998 799999864
No 449
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=90.93 E-value=0.35 Score=47.08 Aligned_cols=35 Identities=31% Similarity=0.450 Sum_probs=31.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC-cEEEEecCc
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARD 90 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~-~V~vlEa~~ 90 (530)
...+|+|||+|-.|..+|..|++.|. +|+|+|...
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 45689999999999999999999998 899999853
No 450
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=90.87 E-value=0.39 Score=41.83 Aligned_cols=32 Identities=41% Similarity=0.380 Sum_probs=29.1
Q ss_pred eEEEECCChHHHHHHHHHHHCCC-cEEEEecCc
Q 009635 59 KVVIAGAGLAGLSTAKYLADAGH-KPLLLEARD 90 (530)
Q Consensus 59 dVvIIGaG~aGl~aA~~L~~~G~-~V~vlEa~~ 90 (530)
+|+|||+|-.|..+|..|++.|. +++|+|...
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 48999999999999999999998 599999864
No 451
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=90.83 E-value=0.31 Score=50.08 Aligned_cols=35 Identities=23% Similarity=0.295 Sum_probs=31.3
Q ss_pred CCCeEEEECCChHHHH-HHHHHHHCCCcEEEEecCc
Q 009635 56 KPLKVVIAGAGLAGLS-TAKYLADAGHKPLLLEARD 90 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~-aA~~L~~~G~~V~vlEa~~ 90 (530)
+..+|.|||.|-+|++ +|..|.+.|++|++.|.+.
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~ 41 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKE 41 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCC
Confidence 4458999999999999 5999999999999999764
No 452
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.72 E-value=0.29 Score=49.93 Aligned_cols=32 Identities=19% Similarity=0.275 Sum_probs=28.8
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 009635 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (530)
Q Consensus 57 ~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~ 89 (530)
..+|+|+|.|.+|.++|..|.+ |.+|+|.|.+
T Consensus 6 ~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~ 37 (454)
T PRK01368 6 KQKIGVFGLGKTGISVYEELQN-KYDVIVYDDL 37 (454)
T ss_pred CCEEEEEeecHHHHHHHHHHhC-CCEEEEECCC
Confidence 3589999999999999999995 9999999954
No 453
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=90.69 E-value=0.38 Score=46.32 Aligned_cols=32 Identities=41% Similarity=0.578 Sum_probs=29.1
Q ss_pred eEEEECCChHHHHHHHHHHHCC--CcEEEEecCc
Q 009635 59 KVVIAGAGLAGLSTAKYLADAG--HKPLLLEARD 90 (530)
Q Consensus 59 dVvIIGaG~aGl~aA~~L~~~G--~~V~vlEa~~ 90 (530)
+|+|||+|-.|.++|+.|+..| .+|+++|.+.
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~ 35 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINE 35 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 6999999999999999999998 4799999863
No 454
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=90.69 E-value=0.39 Score=43.69 Aligned_cols=32 Identities=31% Similarity=0.428 Sum_probs=28.5
Q ss_pred CeEEEEC-CChHHHHHHHHHHHCCCcEEEEecC
Q 009635 58 LKVVIAG-AGLAGLSTAKYLADAGHKPLLLEAR 89 (530)
Q Consensus 58 ~dVvIIG-aG~aGl~aA~~L~~~G~~V~vlEa~ 89 (530)
++|.||| +|..|.+.|..|++.|++|+++.++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~ 33 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRD 33 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 3699997 7999999999999999999998664
No 455
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=90.69 E-value=0.39 Score=46.84 Aligned_cols=35 Identities=37% Similarity=0.604 Sum_probs=31.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC---cEEEEecCc
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGH---KPLLLEARD 90 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~---~V~vlEa~~ 90 (530)
++.+|+|.|||.+|+++|..|...|. +|.++|+..
T Consensus 198 ~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G 235 (432)
T COG0281 198 KDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKG 235 (432)
T ss_pred cceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCC
Confidence 66799999999999999999999987 699999873
No 456
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.67 E-value=0.34 Score=49.82 Aligned_cols=33 Identities=27% Similarity=0.502 Sum_probs=30.2
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 009635 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (530)
Q Consensus 57 ~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~ 89 (530)
..+|.|+|.|.+|+++|..|.+.|.+|++.|+.
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~ 47 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLSELGCDVVVADDN 47 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCCEEEEECCC
Confidence 447999999999999999999999999999964
No 457
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=90.67 E-value=0.31 Score=46.74 Aligned_cols=33 Identities=39% Similarity=0.516 Sum_probs=28.4
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCcEEEEecCc
Q 009635 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~ 90 (530)
++|.|+|+|..|...|+.|++.|.+|+++=+.+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~ 33 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSR 33 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHH
Confidence 479999999999999999999997777775543
No 458
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=90.65 E-value=0.37 Score=49.27 Aligned_cols=34 Identities=32% Similarity=0.499 Sum_probs=31.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~ 89 (530)
...+|+|+|+|..|+.++..+...|.+|+++|.+
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~ 196 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTR 196 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3579999999999999999999999999999875
No 459
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=90.61 E-value=0.34 Score=52.50 Aligned_cols=35 Identities=31% Similarity=0.425 Sum_probs=31.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCc
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~ 90 (530)
+...|.|||||..|...|+.++..|++|+++|.+.
T Consensus 334 ~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~ 368 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATP 368 (737)
T ss_pred cccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCH
Confidence 34579999999999999999999999999999864
No 460
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=90.60 E-value=0.45 Score=48.38 Aligned_cols=36 Identities=25% Similarity=0.356 Sum_probs=32.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcc
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~ 91 (530)
..++|+|||+|.||...|-+|++.|.+|+++-++..
T Consensus 174 ~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~ 209 (443)
T COG2072 174 RGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPP 209 (443)
T ss_pred CCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCC
Confidence 457999999999999999999999999999987643
No 461
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=90.45 E-value=0.44 Score=42.66 Aligned_cols=34 Identities=35% Similarity=0.462 Sum_probs=31.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC-cEEEEecC
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEAR 89 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~-~V~vlEa~ 89 (530)
.+.+|+|||.|-.|..+|..|++.|. +++|+|..
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 56799999999999999999999997 79999875
No 462
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=90.35 E-value=0.49 Score=42.10 Aligned_cols=34 Identities=29% Similarity=0.406 Sum_probs=30.2
Q ss_pred CCCeEEEECC-ChHHHHHHHHHHHCCCcEEEEecC
Q 009635 56 KPLKVVIAGA-GLAGLSTAKYLADAGHKPLLLEAR 89 (530)
Q Consensus 56 ~~~dVvIIGa-G~aGl~aA~~L~~~G~~V~vlEa~ 89 (530)
+..+++|+|| |..|..+|..|++.|.+|+++.++
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4568999997 999999999999999999999754
No 463
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=90.34 E-value=0.45 Score=47.43 Aligned_cols=35 Identities=26% Similarity=0.313 Sum_probs=31.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCc
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~ 90 (530)
....|+|+|+|..|+.+|..|...|.+|+++|.++
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 45699999999999999999999999999998764
No 464
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=90.24 E-value=0.51 Score=44.99 Aligned_cols=34 Identities=26% Similarity=0.255 Sum_probs=30.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCc-EEEEecC
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHK-PLLLEAR 89 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~-V~vlEa~ 89 (530)
....++|+|||-+|.++|+.|++.|.+ |+|+.++
T Consensus 125 ~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~ 159 (289)
T PRK12548 125 KGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIK 159 (289)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 446899999999999999999999986 9999875
No 465
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=90.24 E-value=0.44 Score=45.26 Aligned_cols=35 Identities=17% Similarity=0.333 Sum_probs=31.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCc
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~ 90 (530)
...+|+|||.|-.|.+.|..|...|.+|++++++.
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 45689999999999999999999999999999864
No 466
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=90.17 E-value=0.84 Score=47.02 Aligned_cols=40 Identities=20% Similarity=0.244 Sum_probs=32.4
Q ss_pred CCCCCceEEecccccCCCCCcHHHHHHHHHHHHHHHHHhhhh
Q 009635 473 RSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVL 514 (530)
Q Consensus 473 ~~~~~~l~~aG~~~~~~~~~~i~gA~~sg~~aA~~vl~~~~~ 514 (530)
.+..++||.+||.+... ..+..|+..|+.||..|...|..
T Consensus 427 ~Ts~~gVfa~GD~~~g~--~~~~~Av~~G~~AA~~i~~~L~g 466 (471)
T PRK12810 427 QTSNPKVFAAGDMRRGQ--SLVVWAIAEGRQAARAIDAYLMG 466 (471)
T ss_pred cCCCCCEEEccccCCCc--hhHHHHHHHHHHHHHHHHHHHhc
Confidence 35678999999987642 36788999999999999888853
No 467
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=90.16 E-value=0.46 Score=43.77 Aligned_cols=36 Identities=39% Similarity=0.545 Sum_probs=31.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC-cEEEEecCcc
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDV 91 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~-~V~vlEa~~~ 91 (530)
...+|+|||+|-.|..+|..|++.|. +++|+|....
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~v 59 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTV 59 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence 45699999999999999999999997 6999987644
No 468
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=90.09 E-value=0.37 Score=39.91 Aligned_cols=31 Identities=29% Similarity=0.395 Sum_probs=27.2
Q ss_pred EEEECCChHHHHHHHHHHHCCCcEEEEecCc
Q 009635 60 VVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (530)
Q Consensus 60 VvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~ 90 (530)
++|+|||..+.+.|..+...|++|+|+|-++
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~ 31 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRP 31 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-C
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 5899999999999999999999999999774
No 469
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=89.97 E-value=0.5 Score=44.57 Aligned_cols=34 Identities=26% Similarity=0.259 Sum_probs=30.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~ 89 (530)
...+++|+|+|-+|.++|+.|++.|.+|+|+.++
T Consensus 116 ~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~ 149 (270)
T TIGR00507 116 PNQRVLIIGAGGAARAVALPLLKADCNVIIANRT 149 (270)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4568999999999999999999999999999875
No 470
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=89.84 E-value=0.5 Score=43.73 Aligned_cols=34 Identities=32% Similarity=0.515 Sum_probs=30.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC-cEEEEecC
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEAR 89 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~-~V~vlEa~ 89 (530)
...+|+|||+|-.|..+|..|++.|. +++|+|..
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 45799999999999999999999997 79999875
No 471
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=89.78 E-value=0.52 Score=39.52 Aligned_cols=33 Identities=33% Similarity=0.421 Sum_probs=29.6
Q ss_pred eEEEECCChHHHHHHHHHHHCCC-cEEEEecCcc
Q 009635 59 KVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDV 91 (530)
Q Consensus 59 dVvIIGaG~aGl~aA~~L~~~G~-~V~vlEa~~~ 91 (530)
+|+|||+|-.|...|..|++.|. +++|+|....
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v 34 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTV 34 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCc
Confidence 48999999999999999999998 6999997644
No 472
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=89.73 E-value=0.51 Score=49.45 Aligned_cols=52 Identities=19% Similarity=0.240 Sum_probs=42.0
Q ss_pred HHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHHHhhhCCcc
Q 009635 283 QSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPEN 338 (530)
Q Consensus 283 ~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~~~~ll~~~ 338 (530)
+++|++++.+.+|+.|.. +.+. |++..|.++.+|++|+||+.+.+..=+|..
T Consensus 70 ~~~~i~L~~~~~v~~idr--~~k~--V~t~~g~~~~YDkLilATGS~pfi~PiPG~ 121 (793)
T COG1251 70 EENGITLYTGEKVIQIDR--ANKV--VTTDAGRTVSYDKLIIATGSYPFILPIPGS 121 (793)
T ss_pred HHcCcEEEcCCeeEEecc--Ccce--EEccCCcEeecceeEEecCccccccCCCCC
Confidence 678999999999999986 3443 889999999999999999987644434443
No 473
>PTZ00117 malate dehydrogenase; Provisional
Probab=89.71 E-value=0.57 Score=45.34 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=30.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCC-CcEEEEecCc
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAG-HKPLLLEARD 90 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G-~~V~vlEa~~ 90 (530)
+..+|+|||||..|.+.|+.|+..| ..|+|+|.+.
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~ 39 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIK 39 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 4569999999999999999999988 5899999753
No 474
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=89.57 E-value=0.41 Score=45.94 Aligned_cols=31 Identities=32% Similarity=0.409 Sum_probs=28.0
Q ss_pred EEEECCChHHHHHHHHHHHCCC-cEEEEecCc
Q 009635 60 VVIAGAGLAGLSTAKYLADAGH-KPLLLEARD 90 (530)
Q Consensus 60 VvIIGaG~aGl~aA~~L~~~G~-~V~vlEa~~ 90 (530)
|+|||+|..|..+|+.|+..|. +|+++|.++
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 5899999999999999998876 999999863
No 475
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=89.55 E-value=0.62 Score=43.08 Aligned_cols=37 Identities=24% Similarity=0.343 Sum_probs=33.3
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcc
Q 009635 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (530)
Q Consensus 55 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~ 91 (530)
....+++|+|||..+...|..+...|++|+|+|-++.
T Consensus 98 ~p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 98 PPAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 4667999999999999999999999999999997644
No 476
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=89.54 E-value=0.49 Score=51.14 Aligned_cols=35 Identities=34% Similarity=0.297 Sum_probs=30.9
Q ss_pred CCCeEEEECCChHHHHHHHHHH-HCCCcEEEEecCc
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLA-DAGHKPLLLEARD 90 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~-~~G~~V~vlEa~~ 90 (530)
+...|.|||||..|...|..++ +.|++|+++|.++
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~ 338 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATKAGIPVRIKDINP 338 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 3457999999999999999998 5899999999864
No 477
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=89.52 E-value=0.46 Score=51.42 Aligned_cols=35 Identities=29% Similarity=0.233 Sum_probs=31.2
Q ss_pred CCCeEEEECCChHHHHHHHHHH-HCCCcEEEEecCc
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLA-DAGHKPLLLEARD 90 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~-~~G~~V~vlEa~~ 90 (530)
.-..|.|||||..|...|+.++ ..|++|+++|.+.
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~ 343 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP 343 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence 3468999999999999999999 8899999999864
No 478
>PRK08328 hypothetical protein; Provisional
Probab=89.52 E-value=0.52 Score=43.23 Aligned_cols=34 Identities=41% Similarity=0.591 Sum_probs=30.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC-cEEEEecC
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEAR 89 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~-~V~vlEa~ 89 (530)
...+|+|||+|-.|..+|..|++.|. +++|+|..
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D 60 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ 60 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 45689999999999999999999997 68898865
No 479
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=89.45 E-value=0.43 Score=48.76 Aligned_cols=34 Identities=18% Similarity=0.190 Sum_probs=31.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~ 89 (530)
...+|+|||+|.+|+-.|..|.+.+.+|+++.++
T Consensus 203 ~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~ 236 (461)
T PLN02172 203 KNEVVVVIGNFASGADISRDIAKVAKEVHIASRA 236 (461)
T ss_pred CCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEee
Confidence 4569999999999999999999999999998764
No 480
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.43 E-value=0.47 Score=49.26 Aligned_cols=34 Identities=26% Similarity=0.467 Sum_probs=30.9
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCcEEEEecCc
Q 009635 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (530)
Q Consensus 57 ~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~ 90 (530)
...|.|||.|.+|+++|..|.+.|++|++.|.+.
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 3579999999999999999999999999999754
No 481
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=89.37 E-value=0.64 Score=44.85 Aligned_cols=34 Identities=29% Similarity=0.432 Sum_probs=30.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC--cEEEEecC
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGH--KPLLLEAR 89 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~--~V~vlEa~ 89 (530)
...+|+|||+|-.|-++|+.|+..|. +++|+|.+
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~ 40 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDIN 40 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 34599999999999999999999887 79999975
No 482
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=89.22 E-value=0.63 Score=44.10 Aligned_cols=34 Identities=26% Similarity=0.305 Sum_probs=30.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCC-CcEEEEecC
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAG-HKPLLLEAR 89 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G-~~V~vlEa~ 89 (530)
...+|+|+|+|-+|.++|+.|++.| .+|+|+.++
T Consensus 122 ~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~ 156 (278)
T PRK00258 122 KGKRILILGAGGAARAVILPLLDLGVAEITIVNRT 156 (278)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 4568999999999999999999999 689999875
No 483
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=89.16 E-value=0.61 Score=42.74 Aligned_cols=35 Identities=40% Similarity=0.512 Sum_probs=31.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC-cEEEEecCc
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARD 90 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~-~V~vlEa~~ 90 (530)
...+|+|||+|-.|..+|..|++.|. +++|+|...
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 45699999999999999999999998 688998753
No 484
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=89.07 E-value=0.43 Score=45.62 Aligned_cols=32 Identities=28% Similarity=0.297 Sum_probs=29.4
Q ss_pred eEEEECCChHHHHHHHHHHHCCCcEEEEecCc
Q 009635 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (530)
Q Consensus 59 dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~ 90 (530)
+|.|||.|..|...|..|++.|++|++++++.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 48899999999999999999999999998763
No 485
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=88.98 E-value=0.57 Score=44.91 Aligned_cols=31 Identities=29% Similarity=0.523 Sum_probs=27.8
Q ss_pred eEEEECCChHHHHHHHHHHHCCC--cEEEEecC
Q 009635 59 KVVIAGAGLAGLSTAKYLADAGH--KPLLLEAR 89 (530)
Q Consensus 59 dVvIIGaG~aGl~aA~~L~~~G~--~V~vlEa~ 89 (530)
+|+|||+|..|.++|+.|+..+. +++|+|.+
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~ 33 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVN 33 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 58999999999999999998876 69999974
No 486
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=88.91 E-value=0.73 Score=41.62 Aligned_cols=33 Identities=27% Similarity=0.406 Sum_probs=29.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCcEEEEec
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEA 88 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa 88 (530)
+...|+|||||-.++.=+..|.+.|.+|+|+-.
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap 56 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSK 56 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 567999999999999999999999999999943
No 487
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=88.89 E-value=0.78 Score=38.98 Aligned_cols=34 Identities=38% Similarity=0.419 Sum_probs=29.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCC-CcEEEEecC
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAG-HKPLLLEAR 89 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G-~~V~vlEa~ 89 (530)
...+++|||+|..|.+.|..|.+.| .+|++++++
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~ 52 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAELGAAKIVIVNRT 52 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 3568999999999999999999986 789999875
No 488
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=88.88 E-value=0.55 Score=48.17 Aligned_cols=34 Identities=24% Similarity=0.511 Sum_probs=31.0
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCcEEEEecCcc
Q 009635 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~ 91 (530)
++|+|||+|..|...|..|.+.|++|+++|++..
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~ 34 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE 34 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence 4799999999999999999999999999998643
No 489
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=88.71 E-value=0.7 Score=43.83 Aligned_cols=34 Identities=18% Similarity=0.228 Sum_probs=30.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC-cEEEEecC
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEAR 89 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~-~V~vlEa~ 89 (530)
...+|+|||+|-+|-++++.|++.|. +|+|+.|.
T Consensus 124 ~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt 158 (282)
T TIGR01809 124 AGFRGLVIGAGGTSRAAVYALASLGVTDITVINRN 158 (282)
T ss_pred CCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 35689999999999999999999997 69999775
No 490
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=88.70 E-value=0.66 Score=46.02 Aligned_cols=36 Identities=33% Similarity=0.324 Sum_probs=32.3
Q ss_pred CCCCCeEEEEC-CChHHHHHHHHHHHCCCcEEEEecC
Q 009635 54 PSKPLKVVIAG-AGLAGLSTAKYLADAGHKPLLLEAR 89 (530)
Q Consensus 54 ~~~~~dVvIIG-aG~aGl~aA~~L~~~G~~V~vlEa~ 89 (530)
.|...+|+||| .|..|-+.|..|.+.|+.|++++++
T Consensus 95 ~~~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 95 NPDLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred CcccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCC
Confidence 34667899999 8999999999999999999999975
No 491
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.68 E-value=0.52 Score=48.22 Aligned_cols=35 Identities=26% Similarity=0.467 Sum_probs=31.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCc
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~ 90 (530)
..--|+|||.|-+|+++|..|.+.|++|++.|...
T Consensus 5 ~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 39 (448)
T PRK03803 5 SDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE 39 (448)
T ss_pred cCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence 34479999999999999999999999999999754
No 492
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=88.52 E-value=0.57 Score=46.43 Aligned_cols=48 Identities=13% Similarity=0.167 Sum_probs=37.0
Q ss_pred HHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccChHH
Q 009635 278 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (530)
Q Consensus 278 l~~~l~~~g~~i~~~t~V~~I~~~~~g~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (530)
+.+.+++.|+++..+ .|++|..+ + + .|.+.+|+++.+|++|+||+...
T Consensus 60 ~~~~~~~~gv~~~~~-~v~~id~~-~-~--~V~~~~g~~~~yD~LviAtG~~~ 107 (364)
T TIGR03169 60 LRRLARQAGARFVIA-EATGIDPD-R-R--KVLLANRPPLSYDVLSLDVGSTT 107 (364)
T ss_pred HHHHHHhcCCEEEEE-EEEEEecc-c-C--EEEECCCCcccccEEEEccCCCC
Confidence 445556678998775 79999863 2 3 37788888899999999999764
No 493
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=88.49 E-value=0.52 Score=48.06 Aligned_cols=34 Identities=18% Similarity=0.178 Sum_probs=31.5
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCcEEEEecCcc
Q 009635 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~ 91 (530)
++|.|||.|..|.+.|..|+++|++|++++++..
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~ 35 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYE 35 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 5899999999999999999999999999998644
No 494
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=88.43 E-value=0.63 Score=43.40 Aligned_cols=34 Identities=29% Similarity=0.549 Sum_probs=29.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHHC----CC-------cEEEEecC
Q 009635 56 KPLKVVIAGAGLAGLSTAKYLADA----GH-------KPLLLEAR 89 (530)
Q Consensus 56 ~~~dVvIIGaG~aGl~aA~~L~~~----G~-------~V~vlEa~ 89 (530)
.+.+|+|+|||.+|+.+|..|... |. ++.++|++
T Consensus 24 ~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~ 68 (279)
T cd05312 24 SDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSK 68 (279)
T ss_pred hhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCC
Confidence 457999999999999999999875 75 78888876
No 495
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=88.42 E-value=0.33 Score=39.55 Aligned_cols=37 Identities=38% Similarity=0.493 Sum_probs=29.0
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHCCCcEEEEecCc
Q 009635 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (530)
Q Consensus 54 ~~~~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~ 90 (530)
.....+|.|||+|-.|-+-|..|.+.|+.|+-+..+.
T Consensus 7 ~~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs 43 (127)
T PF10727_consen 7 QAARLKIGIIGAGRVGTALARALARAGHEVVGVYSRS 43 (127)
T ss_dssp -----EEEEECTSCCCCHHHHHHHHTTSEEEEESSCH
T ss_pred CCCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 3467899999999999999999999999998776543
No 496
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=88.37 E-value=0.88 Score=42.79 Aligned_cols=33 Identities=27% Similarity=0.386 Sum_probs=29.6
Q ss_pred CeEEEECCChHHHHHHHHHHHCCC-cEEEEecCc
Q 009635 58 LKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARD 90 (530)
Q Consensus 58 ~dVvIIGaG~aGl~aA~~L~~~G~-~V~vlEa~~ 90 (530)
.+|+|+|+|-++.++++.|++.|. +|+|+.+..
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~ 156 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVARNE 156 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence 489999999999999999999997 599998763
No 497
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=88.29 E-value=0.79 Score=43.41 Aligned_cols=33 Identities=30% Similarity=0.223 Sum_probs=29.8
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCC-cEEEEecC
Q 009635 57 PLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEAR 89 (530)
Q Consensus 57 ~~dVvIIGaG~aGl~aA~~L~~~G~-~V~vlEa~ 89 (530)
...|+|+|||-++-++|+.|++.|. +|+|+.+.
T Consensus 127 ~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~ 160 (283)
T PRK14027 127 LDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD 160 (283)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 4689999999999999999999986 69999875
No 498
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=88.22 E-value=0.3 Score=46.86 Aligned_cols=39 Identities=31% Similarity=0.521 Sum_probs=35.4
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCcEEEEecCcccCce
Q 009635 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGK 95 (530)
Q Consensus 57 ~~dVvIIGaG~aGl~aA~~L~~~G~~V~vlEa~~~~GG~ 95 (530)
..+.+|||||+.||-.+-.-.+.|.+||++|..+.+||.
T Consensus 211 Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~ 249 (506)
T KOG1335|consen 211 PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV 249 (506)
T ss_pred cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc
Confidence 458999999999999999999999999999998887764
No 499
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=88.21 E-value=1 Score=44.72 Aligned_cols=37 Identities=30% Similarity=0.482 Sum_probs=33.0
Q ss_pred CCCCCCeEEEECC-ChHHHHHHHHHHHCCCcEEEEecC
Q 009635 53 RPSKPLKVVIAGA-GLAGLSTAKYLADAGHKPLLLEAR 89 (530)
Q Consensus 53 ~~~~~~dVvIIGa-G~aGl~aA~~L~~~G~~V~vlEa~ 89 (530)
.....++|+|.|| |..|...+..|.++|++|+.+.+.
T Consensus 17 ~~~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~ 54 (370)
T PLN02695 17 WPSEKLRICITGAGGFIASHIARRLKAEGHYIIASDWK 54 (370)
T ss_pred CCCCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEec
Confidence 3456789999999 999999999999999999999874
No 500
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=88.14 E-value=0.24 Score=48.26 Aligned_cols=34 Identities=38% Similarity=0.505 Sum_probs=0.0
Q ss_pred eEEEECCChHHHHHHHHHHH--------------CCCcEEEEecCccc
Q 009635 59 KVVIAGAGLAGLSTAKYLAD--------------AGHKPLLLEARDVL 92 (530)
Q Consensus 59 dVvIIGaG~aGl~aA~~L~~--------------~G~~V~vlEa~~~~ 92 (530)
.+||||||++|+-.|.+|+. .-.+|+++||.+.+
T Consensus 220 h~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~i 267 (491)
T KOG2495|consen 220 HFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHI 267 (491)
T ss_pred EEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhH
Done!