Query 009636
Match_columns 530
No_of_seqs 393 out of 2779
Neff 10.4
Searched_HMMs 46136
Date Thu Mar 28 15:30:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009636.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009636hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5064 SRP1 Karyopherin (impo 100.0 3.6E-88 7.7E-93 596.7 37.8 514 7-528 5-526 (526)
2 KOG0166 Karyopherin (importin) 100.0 4.7E-85 1E-89 624.0 49.6 508 9-529 5-514 (514)
3 KOG0166 Karyopherin (importin) 100.0 3.1E-43 6.7E-48 337.0 30.7 368 73-444 109-488 (514)
4 COG5064 SRP1 Karyopherin (impo 100.0 2.4E-43 5.2E-48 312.4 22.6 372 66-441 105-495 (526)
5 PLN03200 cellulose synthase-in 100.0 2E-39 4.4E-44 354.8 44.7 408 72-499 188-642 (2102)
6 PLN03200 cellulose synthase-in 100.0 1.1E-37 2.4E-42 341.3 44.5 415 73-496 404-861 (2102)
7 KOG4224 Armadillo repeat prote 100.0 1E-29 2.3E-34 227.9 23.4 363 73-445 85-449 (550)
8 KOG4224 Armadillo repeat prote 100.0 4.4E-29 9.6E-34 223.9 26.1 363 71-444 124-495 (550)
9 PF05804 KAP: Kinesin-associat 100.0 1.4E-24 3E-29 221.0 39.2 389 76-492 253-646 (708)
10 PF05804 KAP: Kinesin-associat 99.9 1.4E-23 3.1E-28 213.7 34.4 362 73-449 290-656 (708)
11 KOG0168 Putative ubiquitin fus 99.9 3.5E-20 7.6E-25 183.3 28.7 389 74-477 168-654 (1051)
12 KOG1048 Neural adherens juncti 99.8 6E-18 1.3E-22 168.6 26.1 366 117-498 234-687 (717)
13 PF10508 Proteasom_PSMB: Prote 99.8 3.2E-15 6.9E-20 151.5 37.3 398 76-495 41-462 (503)
14 KOG1048 Neural adherens juncti 99.8 1.7E-16 3.7E-21 158.3 26.7 364 74-445 234-687 (717)
15 PF10508 Proteasom_PSMB: Prote 99.8 2.3E-15 5E-20 152.5 35.4 401 76-495 6-420 (503)
16 KOG4500 Rho/Rac GTPase guanine 99.8 7.5E-17 1.6E-21 148.8 21.7 381 84-481 53-460 (604)
17 KOG2122 Beta-catenin-binding p 99.7 7.8E-16 1.7E-20 160.0 26.2 366 74-446 198-605 (2195)
18 KOG4199 Uncharacterized conser 99.7 1.7E-14 3.7E-19 129.4 28.0 317 115-440 103-442 (461)
19 KOG2171 Karyopherin (importin) 99.7 3.4E-14 7.4E-19 147.1 34.0 361 74-446 119-508 (1075)
20 KOG1222 Kinesin associated pro 99.7 2.8E-14 6E-19 133.8 27.0 379 86-491 276-659 (791)
21 KOG1222 Kinesin associated pro 99.7 4.9E-13 1.1E-17 125.5 31.6 361 73-449 304-670 (791)
22 KOG4500 Rho/Rac GTPase guanine 99.7 1.3E-13 2.7E-18 127.8 27.3 402 73-488 87-512 (604)
23 KOG4199 Uncharacterized conser 99.6 1.7E-13 3.6E-18 123.1 25.5 310 83-399 117-444 (461)
24 PRK09687 putative lyase; Provi 99.6 6E-14 1.3E-18 130.5 21.8 255 117-439 24-279 (280)
25 PRK09687 putative lyase; Provi 99.6 1.6E-13 3.5E-18 127.7 23.6 254 74-396 24-279 (280)
26 KOG1293 Proteins containing ar 99.6 1.2E-12 2.6E-17 127.8 29.3 405 77-496 13-534 (678)
27 KOG2023 Nuclear transport rece 99.6 1.7E-13 3.6E-18 133.3 21.9 340 73-423 128-527 (885)
28 PF04826 Arm_2: Armadillo-like 99.6 3.5E-13 7.6E-18 122.4 22.6 237 241-486 10-253 (254)
29 KOG2122 Beta-catenin-binding p 99.6 7.2E-14 1.6E-18 145.8 20.2 268 89-359 313-603 (2195)
30 PRK13800 putative oxidoreducta 99.6 3.6E-12 7.7E-17 138.7 30.4 275 73-438 621-895 (897)
31 KOG2171 Karyopherin (importin) 99.6 9E-12 2E-16 129.4 31.2 396 74-491 37-500 (1075)
32 PF04826 Arm_2: Armadillo-like 99.5 2.4E-12 5.3E-17 117.0 20.8 196 113-315 9-206 (254)
33 KOG1293 Proteins containing ar 99.5 1.7E-11 3.7E-16 119.9 25.1 370 71-444 49-535 (678)
34 PRK13800 putative oxidoreducta 99.5 2.5E-11 5.5E-16 132.2 29.0 277 114-491 619-895 (897)
35 PTZ00429 beta-adaptin; Provisi 99.5 4E-10 8.7E-15 117.5 36.2 261 73-360 68-329 (746)
36 cd00020 ARM Armadillo/beta-cat 99.5 1.4E-12 3.1E-17 106.5 14.0 119 111-231 2-120 (120)
37 KOG2023 Nuclear transport rece 99.5 1.5E-11 3.3E-16 119.9 22.7 316 116-443 128-506 (885)
38 cd00020 ARM Armadillo/beta-cat 99.5 1.9E-12 4.1E-17 105.8 14.2 118 281-399 3-120 (120)
39 PTZ00429 beta-adaptin; Provisi 99.4 1.1E-09 2.4E-14 114.2 36.1 294 73-399 32-326 (746)
40 cd00256 VATPase_H VATPase_H, r 99.4 2.5E-10 5.4E-15 110.6 28.6 322 160-495 54-425 (429)
41 PF01602 Adaptin_N: Adaptin N 99.4 2.3E-11 5E-16 126.6 22.5 328 73-444 42-371 (526)
42 PF01602 Adaptin_N: Adaptin N 99.4 2.5E-10 5.4E-15 118.8 30.0 326 77-444 8-335 (526)
43 PF01749 IBB: Importin beta bi 99.4 8.7E-14 1.9E-18 106.3 2.3 90 6-95 3-96 (97)
44 cd00256 VATPase_H VATPase_H, r 99.4 4.4E-10 9.6E-15 108.9 27.2 321 74-399 54-425 (429)
45 KOG1241 Karyopherin (importin) 99.3 2.2E-10 4.7E-15 113.8 20.9 367 73-447 125-535 (859)
46 KOG0168 Putative ubiquitin fus 99.2 3.6E-09 7.8E-14 106.4 24.3 343 74-423 212-653 (1051)
47 KOG1241 Karyopherin (importin) 99.2 3.4E-09 7.3E-14 105.6 23.2 352 79-446 96-481 (859)
48 KOG0213 Splicing factor 3b, su 99.2 2.1E-09 4.6E-14 106.4 19.2 345 74-443 717-1066(1172)
49 KOG2759 Vacuolar H+-ATPase V1 99.2 1.4E-08 3.1E-13 94.9 22.5 323 74-400 66-439 (442)
50 KOG0946 ER-Golgi vesicle-tethe 99.1 1.8E-07 3.8E-12 93.9 29.0 323 73-401 22-401 (970)
51 KOG2759 Vacuolar H+-ATPase V1 99.1 1.1E-07 2.4E-12 89.1 25.9 322 161-496 67-439 (442)
52 KOG2160 Armadillo/beta-catenin 99.1 3.9E-08 8.5E-13 90.9 22.2 190 255-446 95-286 (342)
53 KOG1059 Vesicle coat complex A 99.1 2.5E-07 5.4E-12 92.0 28.8 218 74-314 145-365 (877)
54 PF03224 V-ATPase_H_N: V-ATPas 99.0 1.3E-08 2.8E-13 97.6 17.8 224 254-491 68-310 (312)
55 KOG2160 Armadillo/beta-catenin 99.0 2.2E-08 4.9E-13 92.5 17.0 184 130-314 96-282 (342)
56 KOG0946 ER-Golgi vesicle-tethe 99.0 1.9E-06 4.2E-11 86.7 30.8 322 117-444 23-401 (970)
57 PF03224 V-ATPase_H_N: V-ATPas 99.0 3.1E-08 6.7E-13 94.9 16.9 218 170-390 68-305 (312)
58 KOG1517 Guanine nucleotide bin 98.9 1E-07 2.2E-12 98.3 20.0 271 87-368 450-743 (1387)
59 COG5215 KAP95 Karyopherin (imp 98.9 2E-07 4.4E-12 90.2 20.1 360 73-446 129-533 (858)
60 KOG1062 Vesicle coat complex A 98.9 1E-06 2.2E-11 88.9 25.0 296 76-401 110-453 (866)
61 COG5181 HSH155 U2 snRNP splice 98.9 1.1E-08 2.3E-13 99.5 10.8 266 159-444 604-872 (975)
62 KOG1789 Endocytosis protein RM 98.9 5.3E-06 1.2E-10 85.9 29.4 330 88-425 1740-2142(2235)
63 KOG1061 Vesicle coat complex A 98.8 2.6E-06 5.6E-11 86.1 24.7 342 73-447 49-420 (734)
64 COG5215 KAP95 Karyopherin (imp 98.8 4E-06 8.7E-11 81.5 24.6 349 78-446 99-483 (858)
65 KOG1062 Vesicle coat complex A 98.8 9.2E-06 2E-10 82.3 27.1 384 19-442 20-451 (866)
66 KOG1824 TATA-binding protein-i 98.7 1E-05 2.2E-10 83.2 26.9 410 74-494 48-598 (1233)
67 KOG1824 TATA-binding protein-i 98.7 3.8E-06 8.2E-11 86.2 23.8 355 77-446 9-406 (1233)
68 KOG1242 Protein containing ada 98.7 4.7E-05 1E-09 75.5 30.6 314 117-446 97-448 (569)
69 KOG0212 Uncharacterized conser 98.7 1.6E-06 3.4E-11 84.1 19.5 322 113-446 81-410 (675)
70 KOG4413 26S proteasome regulat 98.7 4.5E-05 9.7E-10 69.5 27.5 344 74-422 83-461 (524)
71 KOG3678 SARM protein (with ste 98.7 1.4E-06 3E-11 82.6 17.8 271 110-397 174-450 (832)
72 KOG0213 Splicing factor 3b, su 98.7 7.6E-06 1.6E-10 81.9 23.7 332 118-496 801-1143(1172)
73 KOG3678 SARM protein (with ste 98.7 1.3E-06 2.8E-11 82.8 16.7 266 73-355 180-450 (832)
74 KOG1061 Vesicle coat complex A 98.7 2.1E-06 4.6E-11 86.7 19.2 301 73-399 86-415 (734)
75 KOG1517 Guanine nucleotide bin 98.6 2.3E-06 5E-11 88.6 17.5 248 74-325 473-743 (1387)
76 KOG0211 Protein phosphatase 2A 98.6 2.2E-05 4.7E-10 81.9 24.9 382 75-491 239-660 (759)
77 COG5369 Uncharacterized conser 98.6 9.5E-07 2E-11 85.1 12.9 305 179-493 409-739 (743)
78 KOG0212 Uncharacterized conser 98.6 5.6E-06 1.2E-10 80.5 18.1 318 73-402 84-409 (675)
79 KOG2973 Uncharacterized conser 98.5 6.7E-05 1.5E-09 67.9 22.9 270 204-495 6-315 (353)
80 KOG1789 Endocytosis protein RM 98.5 8.1E-05 1.8E-09 77.5 25.3 306 69-382 1767-2142(2235)
81 COG5181 HSH155 U2 snRNP splice 98.5 1.2E-05 2.7E-10 78.9 18.6 337 117-495 605-947 (975)
82 COG5369 Uncharacterized conser 98.5 1E-06 2.2E-11 85.0 11.0 282 111-397 426-739 (743)
83 KOG1060 Vesicle coat complex A 98.5 0.00047 1E-08 70.1 29.7 367 74-495 36-458 (968)
84 KOG1242 Protein containing ada 98.5 0.00019 4.2E-09 71.3 26.7 328 74-423 97-463 (569)
85 KOG1059 Vesicle coat complex A 98.5 0.00034 7.4E-09 70.4 28.3 255 117-401 145-403 (877)
86 PF05536 Neurochondrin: Neuroc 98.5 0.00022 4.9E-09 73.0 28.3 383 73-473 5-458 (543)
87 KOG4413 26S proteasome regulat 98.5 6.3E-05 1.4E-09 68.5 20.7 318 73-396 128-481 (524)
88 TIGR02270 conserved hypothetic 98.4 0.00012 2.6E-09 72.0 23.4 242 74-400 55-297 (410)
89 KOG1060 Vesicle coat complex A 98.4 0.00031 6.8E-09 71.3 26.2 297 75-405 110-464 (968)
90 KOG4646 Uncharacterized conser 98.4 6.8E-06 1.5E-10 64.7 11.6 153 328-494 17-169 (173)
91 PF14664 RICTOR_N: Rapamycin-i 98.4 8.4E-05 1.8E-09 72.2 21.2 314 76-399 28-364 (371)
92 KOG2973 Uncharacterized conser 98.4 0.00017 3.7E-09 65.4 20.8 272 74-357 4-315 (353)
93 PF14664 RICTOR_N: Rapamycin-i 98.3 0.00022 4.7E-09 69.3 23.2 318 161-494 27-363 (371)
94 TIGR02270 conserved hypothetic 98.3 0.00022 4.8E-09 70.1 23.2 244 116-443 54-297 (410)
95 KOG1077 Vesicle coat complex A 98.3 0.0019 4.1E-08 65.1 28.9 327 75-434 76-425 (938)
96 COG1413 FOG: HEAT repeat [Ener 98.2 0.00074 1.6E-08 65.8 24.9 251 73-400 43-305 (335)
97 PF00514 Arm: Armadillo/beta-c 98.2 3.8E-06 8.2E-11 53.2 5.4 41 359-399 1-41 (41)
98 PF00514 Arm: Armadillo/beta-c 98.2 3.7E-06 8E-11 53.2 5.0 41 148-188 1-41 (41)
99 KOG4646 Uncharacterized conser 98.2 1.9E-05 4.1E-10 62.2 9.5 115 117-234 17-131 (173)
100 PF12460 MMS19_C: RNAPII trans 98.2 0.0052 1.1E-07 61.5 29.7 346 76-446 2-398 (415)
101 KOG2259 Uncharacterized conser 98.2 4.5E-05 9.8E-10 75.7 14.3 220 206-444 203-441 (823)
102 KOG1077 Vesicle coat complex A 98.2 0.002 4.4E-08 64.9 25.5 300 121-445 79-401 (938)
103 KOG1058 Vesicle coat complex C 98.1 0.0015 3.2E-08 66.3 23.9 149 327-498 317-466 (948)
104 COG5231 VMA13 Vacuolar H+-ATPa 98.1 0.00028 6E-09 64.2 16.9 238 247-496 153-429 (432)
105 KOG0915 Uncharacterized conser 98.1 0.00025 5.5E-09 77.0 19.4 336 76-431 821-1190(1702)
106 KOG2259 Uncharacterized conser 98.1 0.00013 2.9E-09 72.5 15.8 247 163-432 202-465 (823)
107 KOG1240 Protein kinase contain 98.1 0.0001 2.2E-09 78.0 15.9 267 75-357 424-725 (1431)
108 COG1413 FOG: HEAT repeat [Ener 98.1 0.0025 5.3E-08 62.2 25.0 215 116-395 43-269 (335)
109 PF10165 Ric8: Guanine nucleot 98.1 0.00091 2E-08 67.1 22.0 265 94-361 2-341 (446)
110 KOG0915 Uncharacterized conser 98.1 0.0023 5E-08 69.9 25.8 318 115-444 997-1346(1702)
111 KOG1991 Nuclear transport rece 98.0 0.01 2.2E-07 62.5 28.4 340 93-444 392-759 (1010)
112 PF05536 Neurochondrin: Neuroc 98.0 0.00075 1.6E-08 69.3 20.5 235 161-398 7-260 (543)
113 KOG2062 26S proteasome regulat 98.0 0.00031 6.8E-09 70.8 17.0 264 117-428 414-680 (929)
114 PF12348 CLASP_N: CLASP N term 98.0 5.8E-05 1.3E-09 69.1 11.2 186 295-495 17-206 (228)
115 PF13513 HEAT_EZ: HEAT-like re 98.0 1.5E-05 3.2E-10 54.4 5.3 55 342-397 1-55 (55)
116 COG5231 VMA13 Vacuolar H+-ATPa 98.0 0.00034 7.3E-09 63.7 14.8 229 124-356 157-427 (432)
117 PF12348 CLASP_N: CLASP N term 98.0 8.7E-05 1.9E-09 67.9 11.7 186 83-276 17-210 (228)
118 KOG1240 Protein kinase contain 98.0 0.0006 1.3E-08 72.6 18.3 297 161-496 424-726 (1431)
119 COG5240 SEC21 Vesicle coat com 97.9 0.00071 1.5E-08 66.4 16.2 283 81-399 272-555 (898)
120 PF13646 HEAT_2: HEAT repeats; 97.9 5.2E-05 1.1E-09 57.6 6.8 87 118-227 1-88 (88)
121 KOG2734 Uncharacterized conser 97.8 0.0051 1.1E-07 58.8 20.6 224 71-295 123-371 (536)
122 KOG0211 Protein phosphatase 2A 97.8 0.026 5.7E-07 59.5 28.0 387 75-497 199-627 (759)
123 COG5240 SEC21 Vesicle coat com 97.8 0.015 3.3E-07 57.5 24.0 309 136-494 246-554 (898)
124 KOG1943 Beta-tubulin folding c 97.8 0.0087 1.9E-07 63.5 23.6 261 116-400 341-612 (1133)
125 PF12755 Vac14_Fab1_bd: Vacuol 97.8 0.00018 3.9E-09 55.0 8.6 94 345-442 3-96 (97)
126 KOG2734 Uncharacterized conser 97.8 0.0033 7.2E-08 60.0 18.6 224 239-474 121-369 (536)
127 KOG4535 HEAT and armadillo rep 97.8 0.0007 1.5E-08 65.1 14.3 177 257-438 405-599 (728)
128 PF13646 HEAT_2: HEAT repeats; 97.8 9.7E-05 2.1E-09 56.1 7.0 86 75-184 1-88 (88)
129 COG5096 Vesicle coat complex, 97.8 0.022 4.8E-07 59.6 25.8 141 74-232 56-196 (757)
130 KOG0567 HEAT repeat-containing 97.7 0.0035 7.5E-08 55.9 16.7 244 85-399 17-280 (289)
131 PF13513 HEAT_EZ: HEAT-like re 97.7 5.1E-05 1.1E-09 51.6 3.9 55 299-355 1-55 (55)
132 COG5096 Vesicle coat complex, 97.6 0.036 7.9E-07 58.0 24.9 168 125-315 28-196 (757)
133 KOG1943 Beta-tubulin folding c 97.6 0.012 2.7E-07 62.4 21.1 257 159-440 341-609 (1133)
134 PF12460 MMS19_C: RNAPII trans 97.6 0.062 1.4E-06 53.9 25.7 311 75-401 40-396 (415)
135 KOG0567 HEAT repeat-containing 97.5 0.012 2.5E-07 52.7 17.3 256 118-440 5-278 (289)
136 KOG2274 Predicted importin 9 [ 97.5 0.016 3.4E-07 60.4 20.0 235 125-367 458-699 (1005)
137 PF10165 Ric8: Guanine nucleot 97.5 0.035 7.5E-07 55.9 22.0 230 83-314 42-337 (446)
138 KOG1991 Nuclear transport rece 97.5 0.051 1.1E-06 57.5 23.2 266 87-360 432-715 (1010)
139 KOG4535 HEAT and armadillo rep 97.4 0.0015 3.3E-08 62.9 11.3 321 74-400 254-604 (728)
140 KOG2274 Predicted importin 9 [ 97.4 0.019 4.1E-07 59.9 19.6 313 84-410 461-791 (1005)
141 PF09759 Atx10homo_assoc: Spin 97.4 0.00088 1.9E-08 51.2 7.8 68 133-200 2-71 (102)
142 KOG1078 Vesicle coat complex C 97.4 0.018 3.9E-07 59.1 18.9 261 117-399 246-532 (865)
143 PRK14707 hypothetical protein; 97.4 0.27 6E-06 56.4 28.7 402 74-495 164-571 (2710)
144 KOG4151 Myosin assembly protei 97.4 0.008 1.7E-07 61.9 16.3 224 192-422 495-721 (748)
145 KOG1967 DNA repair/transcripti 97.4 0.0021 4.5E-08 66.8 12.1 189 161-355 817-1022(1030)
146 PRK14707 hypothetical protein; 97.4 0.22 4.8E-06 57.1 27.9 356 118-491 165-525 (2710)
147 smart00185 ARM Armadillo/beta- 97.4 0.00056 1.2E-08 43.1 5.3 39 149-187 2-40 (41)
148 KOG1248 Uncharacterized conser 97.4 0.082 1.8E-06 57.1 23.8 233 205-444 657-900 (1176)
149 smart00185 ARM Armadillo/beta- 97.4 0.00057 1.2E-08 43.0 5.2 39 361-399 3-41 (41)
150 KOG1248 Uncharacterized conser 97.3 0.039 8.4E-07 59.5 21.0 243 121-368 658-910 (1176)
151 KOG0414 Chromosome condensatio 97.3 0.1 2.2E-06 56.4 23.6 143 286-444 920-1066(1251)
152 PF11841 DUF3361: Domain of un 97.2 0.018 3.9E-07 47.9 14.1 130 279-409 5-141 (160)
153 PF12717 Cnd1: non-SMC mitotic 97.2 0.017 3.8E-07 50.3 14.8 93 256-358 1-93 (178)
154 PF05918 API5: Apoptosis inhib 97.2 0.068 1.5E-06 54.2 20.6 294 120-445 27-348 (556)
155 PF12717 Cnd1: non-SMC mitotic 97.2 0.017 3.8E-07 50.3 14.5 92 131-233 2-94 (178)
156 PF12755 Vac14_Fab1_bd: Vacuol 97.2 0.0034 7.3E-08 48.1 8.7 93 302-398 3-95 (97)
157 PF08569 Mo25: Mo25-like; Int 97.2 0.067 1.4E-06 51.3 19.3 202 279-493 70-281 (335)
158 PF05004 IFRD: Interferon-rela 97.1 0.026 5.7E-07 53.7 15.8 192 74-271 44-256 (309)
159 COG5116 RPN2 26S proteasome re 97.1 0.021 4.6E-07 56.4 15.0 155 247-426 520-675 (926)
160 PF08569 Mo25: Mo25-like; Int 97.1 0.027 5.9E-07 53.9 15.5 202 154-357 71-283 (335)
161 PF11698 V-ATPase_H_C: V-ATPas 97.0 0.0021 4.5E-08 50.5 6.1 70 414-494 44-114 (119)
162 KOG1058 Vesicle coat complex C 97.0 0.1 2.2E-06 53.6 19.2 326 76-444 102-465 (948)
163 PF09759 Atx10homo_assoc: Spin 97.0 0.0054 1.2E-07 46.9 8.1 67 301-367 2-69 (102)
164 KOG1078 Vesicle coat complex C 96.9 0.38 8.3E-06 49.9 22.5 286 160-494 246-531 (865)
165 KOG2062 26S proteasome regulat 96.8 0.2 4.4E-06 51.5 19.8 167 288-490 522-689 (929)
166 KOG4151 Myosin assembly protei 96.8 0.061 1.3E-06 55.7 16.2 245 144-395 489-737 (748)
167 PF11841 DUF3361: Domain of un 96.8 0.052 1.1E-06 45.2 12.9 127 193-319 3-136 (160)
168 KOG1967 DNA repair/transcripti 96.8 0.014 3.1E-07 60.9 11.3 193 202-398 816-1023(1030)
169 PF05004 IFRD: Interferon-rela 96.7 0.53 1.2E-05 44.9 21.2 195 247-446 47-261 (309)
170 KOG3036 Protein involved in ce 96.7 0.12 2.5E-06 46.0 15.0 144 88-233 94-249 (293)
171 COG5656 SXM1 Importin, protein 96.7 0.31 6.8E-06 50.2 19.8 279 115-402 407-714 (970)
172 PF05918 API5: Apoptosis inhib 96.7 0.26 5.6E-06 50.2 19.4 131 163-312 27-160 (556)
173 PF11698 V-ATPase_H_C: V-ATPas 96.7 0.0052 1.1E-07 48.3 5.9 73 327-399 43-115 (119)
174 PF04078 Rcd1: Cell differenti 96.6 0.21 4.5E-06 45.2 16.5 187 255-444 7-220 (262)
175 KOG1020 Sister chromatid cohes 96.6 1.9 4.1E-05 48.5 28.7 257 217-495 1095-1405(1692)
176 KOG2032 Uncharacterized conser 96.5 0.14 3E-06 50.2 15.5 148 336-495 267-416 (533)
177 KOG1020 Sister chromatid cohes 96.5 2.1 4.5E-05 48.2 33.5 144 74-233 817-962 (1692)
178 PF11864 DUF3384: Domain of un 96.5 1.2 2.6E-05 45.4 23.6 287 87-399 4-330 (464)
179 PF12719 Cnd3: Nuclear condens 96.5 0.35 7.6E-06 46.1 18.3 171 116-297 26-209 (298)
180 PF13764 E3_UbLigase_R4: E3 ub 96.4 0.89 1.9E-05 48.8 22.2 239 242-495 116-406 (802)
181 KOG0414 Chromosome condensatio 96.4 0.096 2.1E-06 56.6 15.0 147 240-402 916-1067(1251)
182 PF12719 Cnd3: Nuclear condens 96.4 0.37 7.9E-06 46.0 17.8 172 242-425 25-209 (298)
183 KOG4653 Uncharacterized conser 96.3 0.23 5E-06 52.0 16.7 220 212-442 737-964 (982)
184 KOG1243 Protein kinase [Genera 96.3 0.3 6.6E-06 50.1 17.2 193 240-447 327-520 (690)
185 KOG4653 Uncharacterized conser 96.2 0.16 3.5E-06 53.0 15.1 222 165-397 733-962 (982)
186 PF11701 UNC45-central: Myosin 96.2 0.055 1.2E-06 45.9 10.2 144 288-439 6-156 (157)
187 PF06025 DUF913: Domain of Unk 96.2 1.3 2.8E-05 43.6 21.0 193 136-339 3-208 (379)
188 KOG2956 CLIP-associating prote 96.2 0.25 5.3E-06 48.2 15.1 147 202-357 330-477 (516)
189 PF13764 E3_UbLigase_R4: E3 ub 96.2 1.7 3.8E-05 46.7 23.0 206 157-380 115-360 (802)
190 COG5098 Chromosome condensatio 96.1 0.41 9E-06 48.9 17.0 176 80-276 860-1041(1128)
191 KOG2032 Uncharacterized conser 96.1 0.49 1.1E-05 46.5 17.0 267 159-442 254-531 (533)
192 PF08045 CDC14: Cell division 96.0 0.28 6E-06 44.8 13.8 103 387-501 108-213 (257)
193 PF07814 WAPL: Wings apart-lik 95.9 0.39 8.4E-06 47.0 16.0 275 161-445 23-358 (361)
194 PF11865 DUF3385: Domain of un 95.9 0.053 1.1E-06 46.1 8.7 147 116-271 10-156 (160)
195 KOG3665 ZYG-1-like serine/thre 95.8 1.1 2.3E-05 47.9 19.4 196 182-395 494-693 (699)
196 COG5656 SXM1 Importin, protein 95.8 3 6.5E-05 43.4 21.5 299 136-447 389-716 (970)
197 KOG2956 CLIP-associating prote 95.8 0.61 1.3E-05 45.6 15.8 174 215-399 300-477 (516)
198 PF04078 Rcd1: Cell differenti 95.7 0.83 1.8E-05 41.5 15.6 194 298-495 8-218 (262)
199 PF02985 HEAT: HEAT repeat; I 95.7 0.018 3.9E-07 33.5 3.5 30 371-400 1-30 (31)
200 KOG3036 Protein involved in ce 95.7 0.74 1.6E-05 41.1 14.6 141 301-444 95-249 (293)
201 PF14668 RICTOR_V: Rapamycin-i 95.6 0.11 2.5E-06 37.1 8.0 66 345-413 4-70 (73)
202 PF06371 Drf_GBD: Diaphanous G 95.6 0.13 2.8E-06 45.3 10.1 111 74-187 67-186 (187)
203 KOG2025 Chromosome condensatio 95.5 1.4 3E-05 45.5 17.8 110 239-354 81-190 (892)
204 PF11701 UNC45-central: Myosin 95.5 0.3 6.4E-06 41.4 11.7 136 254-396 16-156 (157)
205 KOG3665 ZYG-1-like serine/thre 95.5 2.4 5.3E-05 45.3 20.7 174 308-493 494-695 (699)
206 KOG1993 Nuclear transport rece 95.5 4 8.7E-05 42.9 21.8 279 119-410 529-822 (978)
207 KOG1243 Protein kinase [Genera 95.4 0.56 1.2E-05 48.3 14.8 258 75-357 256-515 (690)
208 PF02985 HEAT: HEAT repeat; I 95.4 0.023 5E-07 33.1 3.2 29 117-146 1-29 (31)
209 PF08506 Cse1: Cse1; InterPro 95.4 0.39 8.5E-06 47.0 13.5 140 245-394 212-370 (370)
210 KOG1820 Microtubule-associated 95.4 0.49 1.1E-05 50.8 15.1 187 162-357 256-443 (815)
211 COG5116 RPN2 26S proteasome re 95.4 0.15 3.2E-06 50.8 10.3 151 123-297 523-674 (926)
212 PF07814 WAPL: Wings apart-lik 95.4 1.5 3.2E-05 43.0 17.5 274 118-401 23-357 (361)
213 COG5098 Chromosome condensatio 95.3 0.1 2.2E-06 53.1 9.1 143 286-444 893-1039(1128)
214 PF12231 Rif1_N: Rap1-interact 95.1 3.8 8.2E-05 40.4 21.0 267 172-443 59-353 (372)
215 KOG1525 Sister chromatid cohes 95.1 4.8 0.0001 45.6 22.0 148 285-443 259-406 (1266)
216 PF08045 CDC14: Cell division 95.1 0.43 9.4E-06 43.5 11.9 100 89-189 107-208 (257)
217 KOG1566 Conserved protein Mo25 95.1 2.9 6.2E-05 39.0 17.4 204 153-357 73-286 (342)
218 PF06025 DUF913: Domain of Unk 94.9 2.2 4.8E-05 42.0 17.2 145 302-448 77-238 (379)
219 PF01603 B56: Protein phosphat 94.9 2.2 4.8E-05 42.6 17.5 259 93-365 110-378 (409)
220 PF14668 RICTOR_V: Rapamycin-i 94.6 0.14 3E-06 36.6 6.0 65 134-200 4-69 (73)
221 KOG2025 Chromosome condensatio 94.6 2.3 4.9E-05 44.0 16.3 106 74-190 86-192 (892)
222 KOG2933 Uncharacterized conser 94.4 0.23 5E-06 45.8 8.3 144 287-441 90-233 (334)
223 KOG1820 Microtubule-associated 94.4 1.6 3.4E-05 47.1 15.7 185 76-271 256-442 (815)
224 PLN03076 ARF guanine nucleotid 94.4 4.1 8.8E-05 48.1 19.9 271 170-444 1148-1491(1780)
225 PF11864 DUF3384: Domain of un 94.3 7 0.00015 39.9 29.3 258 80-356 35-329 (464)
226 KOG2611 Neurochondrin/leucine- 94.3 5.5 0.00012 39.4 17.4 133 75-211 13-162 (698)
227 PF01603 B56: Protein phosphat 94.2 4.4 9.5E-05 40.5 17.8 233 155-400 129-371 (409)
228 PF12830 Nipped-B_C: Sister ch 94.2 1.2 2.5E-05 39.1 12.3 147 74-233 9-169 (187)
229 KOG2137 Protein kinase [Signal 94.2 1.6 3.4E-05 45.3 14.5 138 238-384 384-522 (700)
230 KOG1566 Conserved protein Mo25 94.2 4.9 0.00011 37.5 17.8 208 278-496 72-287 (342)
231 PF11707 Npa1: Ribosome 60S bi 94.0 6.2 0.00013 38.2 21.6 159 329-495 58-237 (330)
232 PF11707 Npa1: Ribosome 60S bi 94.0 6.3 0.00014 38.1 19.2 156 287-442 58-237 (330)
233 PF12530 DUF3730: Protein of u 94.0 4.9 0.00011 36.7 18.3 202 118-339 2-215 (234)
234 PF12530 DUF3730: Protein of u 93.9 4.9 0.00011 36.7 16.7 201 162-384 3-217 (234)
235 COG5218 YCG1 Chromosome conden 93.9 6.6 0.00014 39.9 17.6 109 238-352 86-194 (885)
236 KOG2137 Protein kinase [Signal 93.6 6.2 0.00013 41.1 17.4 175 240-426 346-521 (700)
237 KOG2999 Regulator of Rac1, req 92.7 1.7 3.7E-05 43.5 11.4 158 74-235 84-246 (713)
238 PF04063 DUF383: Domain of unk 92.6 1.7 3.6E-05 38.1 10.5 114 294-411 4-142 (192)
239 PF04063 DUF383: Domain of unk 92.6 1.6 3.4E-05 38.3 10.3 123 256-380 8-157 (192)
240 KOG1949 Uncharacterized conser 92.6 3.8 8.1E-05 42.5 13.9 229 198-438 126-366 (1005)
241 KOG2933 Uncharacterized conser 92.4 1.7 3.7E-05 40.3 10.5 146 242-400 87-235 (334)
242 PF01347 Vitellogenin_N: Lipop 92.4 1.3 2.9E-05 47.2 11.7 136 243-397 431-587 (618)
243 PLN03076 ARF guanine nucleotid 92.4 30 0.00064 41.3 26.6 264 84-357 1148-1489(1780)
244 KOG1848 Uncharacterized conser 92.4 5.4 0.00012 44.6 15.7 113 375-493 1002-1130(1610)
245 PF10363 DUF2435: Protein of u 92.4 0.55 1.2E-05 35.5 6.3 73 74-150 4-76 (92)
246 cd03568 VHS_STAM VHS domain fa 92.4 0.46 9.9E-06 39.5 6.4 75 414-498 38-113 (144)
247 PF03378 CAS_CSE1: CAS/CSE pro 92.4 10 0.00022 38.1 17.0 262 131-400 44-325 (435)
248 KOG2999 Regulator of Rac1, req 92.3 9.8 0.00021 38.4 16.0 165 245-411 85-254 (713)
249 KOG2611 Neurochondrin/leucine- 92.2 13 0.00028 36.9 17.1 191 163-357 15-225 (698)
250 PF08167 RIX1: rRNA processing 92.2 1.3 2.9E-05 37.8 9.2 112 285-400 25-144 (165)
251 KOG1822 Uncharacterized conser 92.1 29 0.00063 40.7 23.6 274 161-442 878-1189(2067)
252 COG5218 YCG1 Chromosome conden 92.1 2.6 5.7E-05 42.6 12.0 99 285-392 91-192 (885)
253 PF08506 Cse1: Cse1; InterPro 91.9 13 0.00029 36.4 19.7 132 342-490 225-370 (370)
254 PF08167 RIX1: rRNA processing 91.9 1.9 4.1E-05 36.9 9.9 116 326-446 24-147 (165)
255 KOG2005 26S proteasome regulat 91.8 14 0.00031 38.2 16.8 290 74-405 416-710 (878)
256 PF14500 MMS19_N: Dos2-interac 91.7 11 0.00024 34.9 18.9 222 162-400 2-238 (262)
257 PF12726 SEN1_N: SEN1 N termin 91.7 23 0.0005 38.6 25.0 115 371-498 442-556 (727)
258 cd03567 VHS_GGA VHS domain fam 91.7 1.2 2.5E-05 36.8 7.9 74 371-444 39-118 (139)
259 PF13251 DUF4042: Domain of un 91.6 4.8 0.0001 34.9 11.9 144 301-445 2-177 (182)
260 PF13251 DUF4042: Domain of un 91.3 3.6 7.8E-05 35.6 10.9 141 133-273 2-175 (182)
261 COG5209 RCD1 Uncharacterized p 91.0 1.4 3.1E-05 38.7 7.9 141 90-232 117-269 (315)
262 PF06371 Drf_GBD: Diaphanous G 90.9 1.9 4.1E-05 37.8 9.3 93 389-492 83-184 (187)
263 PF11865 DUF3385: Domain of un 90.9 2.8 6.1E-05 35.6 9.8 38 327-364 10-47 (160)
264 PF10363 DUF2435: Protein of u 90.8 1.3 2.8E-05 33.5 6.8 77 329-408 5-81 (92)
265 PF14225 MOR2-PAG1_C: Cell mor 90.6 11 0.00024 34.9 14.2 214 79-314 13-254 (262)
266 PF01347 Vitellogenin_N: Lipop 90.5 21 0.00046 38.1 18.4 196 117-347 396-612 (618)
267 KOG1992 Nuclear export recepto 90.3 28 0.00061 37.2 18.2 151 118-272 363-527 (960)
268 KOG1949 Uncharacterized conser 90.2 27 0.00058 36.6 17.9 189 118-313 176-369 (1005)
269 PF14500 MMS19_N: Dos2-interac 89.5 18 0.00038 33.7 16.9 222 78-316 4-239 (262)
270 PF12231 Rif1_N: Rap1-interact 89.2 24 0.00052 34.8 20.6 306 84-399 4-352 (372)
271 cd03569 VHS_Hrs_Vps27p VHS dom 89.1 1.3 2.8E-05 36.8 6.1 74 73-146 41-114 (142)
272 PF04388 Hamartin: Hamartin pr 89.0 8.2 0.00018 41.2 13.5 157 74-252 5-161 (668)
273 smart00638 LPD_N Lipoprotein N 88.9 9.1 0.0002 40.4 14.0 136 242-397 392-543 (574)
274 PF08324 PUL: PUL domain; Int 88.8 8.4 0.00018 36.0 12.3 144 134-279 80-238 (268)
275 PF08324 PUL: PUL domain; Int 88.8 1.8 3.8E-05 40.6 7.7 189 288-489 66-268 (268)
276 PF14726 RTTN_N: Rotatin, an a 88.6 4.1 8.9E-05 31.1 8.0 70 411-492 28-97 (98)
277 KOG1993 Nuclear transport rece 88.5 38 0.00082 36.1 22.7 315 74-404 527-869 (978)
278 cd03568 VHS_STAM VHS domain fa 88.4 2.6 5.6E-05 35.0 7.5 73 371-443 38-111 (144)
279 KOG1822 Uncharacterized conser 87.8 61 0.0013 38.3 19.3 230 118-356 878-1126(2067)
280 PF06685 DUF1186: Protein of u 87.8 20 0.00043 32.8 13.3 129 284-418 72-202 (249)
281 PF14225 MOR2-PAG1_C: Cell mor 87.2 25 0.00054 32.6 17.4 179 160-357 65-254 (262)
282 cd03572 ENTH_epsin_related ENT 87.0 7.7 0.00017 31.1 9.0 87 351-442 24-119 (122)
283 COG5209 RCD1 Uncharacterized p 87.0 3.8 8.1E-05 36.2 7.7 138 302-442 117-268 (315)
284 cd03572 ENTH_epsin_related ENT 86.9 10 0.00022 30.4 9.6 74 414-497 39-121 (122)
285 smart00288 VHS Domain present 86.6 2.2 4.7E-05 35.0 6.1 74 73-146 37-111 (133)
286 cd03569 VHS_Hrs_Vps27p VHS dom 86.3 4 8.6E-05 33.9 7.4 74 371-444 42-116 (142)
287 PF14726 RTTN_N: Rotatin, an a 86.0 8.6 0.00019 29.4 8.5 93 88-183 2-95 (98)
288 cd03561 VHS VHS domain family; 86.0 9.8 0.00021 31.1 9.7 75 371-445 38-115 (133)
289 KOG0891 DNA-dependent protein 85.6 8.1 0.00018 46.7 11.9 264 83-359 491-765 (2341)
290 PF12074 DUF3554: Domain of un 85.1 14 0.0003 36.0 11.9 210 115-339 21-256 (339)
291 cd03561 VHS VHS domain family; 85.1 4.2 9.1E-05 33.3 7.0 74 73-146 37-112 (133)
292 cd03567 VHS_GGA VHS domain fam 85.0 5.8 0.00013 32.7 7.7 73 414-496 39-117 (139)
293 PF12031 DUF3518: Domain of un 85.0 4.5 9.7E-05 36.3 7.4 83 300-383 139-229 (257)
294 PF03378 CAS_CSE1: CAS/CSE pro 84.7 41 0.00088 33.9 15.0 262 171-444 42-326 (435)
295 PF12031 DUF3518: Domain of un 84.1 3.1 6.7E-05 37.3 6.0 82 88-171 139-228 (257)
296 PF10521 DUF2454: Protein of u 83.9 14 0.00031 34.8 11.0 116 327-443 119-254 (282)
297 KOG1832 HIV-1 Vpr-binding prot 83.7 33 0.00071 37.0 13.9 166 323-496 597-825 (1516)
298 PF13001 Ecm29: Proteasome sta 83.7 58 0.0013 33.7 22.6 146 341-498 334-491 (501)
299 PF04821 TIMELESS: Timeless pr 83.0 12 0.00026 34.9 10.0 75 425-499 132-212 (266)
300 PF10274 ParcG: Parkin co-regu 82.7 28 0.0006 30.2 11.0 85 239-324 34-119 (183)
301 PF06685 DUF1186: Protein of u 82.2 41 0.00088 30.9 14.5 95 158-258 72-169 (249)
302 KOG1525 Sister chromatid cohes 80.6 1.1E+02 0.0025 35.2 17.7 150 240-399 256-405 (1266)
303 PF12463 DUF3689: Protein of u 80.4 24 0.00051 33.4 10.8 104 343-446 47-177 (303)
304 smart00509 TFS2N Domain in the 80.2 7.4 0.00016 28.1 5.9 52 431-494 19-70 (75)
305 KOG4464 Signaling protein RIC- 80.2 62 0.0014 31.7 18.4 158 74-233 46-233 (532)
306 PF10521 DUF2454: Protein of u 80.1 17 0.00037 34.3 10.0 122 371-495 120-253 (282)
307 PF00790 VHS: VHS domain; Int 79.6 11 0.00024 31.2 7.6 72 414-495 43-118 (140)
308 smart00638 LPD_N Lipoprotein N 79.4 88 0.0019 33.0 19.5 157 161-346 395-567 (574)
309 KOG0413 Uncharacterized conser 79.3 1.1E+02 0.0023 33.8 22.5 104 329-444 970-1075(1529)
310 KOG1832 HIV-1 Vpr-binding prot 79.2 1E+02 0.0022 33.6 15.6 90 298-401 675-775 (1516)
311 smart00288 VHS Domain present 79.2 25 0.00055 28.7 9.5 74 371-444 38-113 (133)
312 KOG2549 Transcription initiati 78.7 31 0.00067 35.0 11.3 143 74-229 208-368 (576)
313 KOG0891 DNA-dependent protein 78.4 45 0.00097 40.9 14.4 251 176-442 461-719 (2341)
314 KOG2005 26S proteasome regulat 78.4 93 0.002 32.7 15.5 73 116-191 48-128 (878)
315 PF13001 Ecm29: Proteasome sta 78.1 44 0.00095 34.5 13.0 218 213-444 248-490 (501)
316 KOG0413 Uncharacterized conser 77.9 8.2 0.00018 41.7 7.5 130 172-314 944-1073(1529)
317 KOG0301 Phospholipase A2-activ 77.9 63 0.0014 33.8 13.4 161 254-422 555-725 (745)
318 PF00790 VHS: VHS domain; Int 77.8 16 0.00034 30.2 8.1 74 371-444 43-120 (140)
319 PRK09169 hypothetical protein; 77.6 1.8E+02 0.0039 35.6 28.9 16 215-230 287-302 (2316)
320 KOG2229 Protein required for a 77.3 20 0.00043 35.9 9.4 112 327-443 16-130 (616)
321 KOG1848 Uncharacterized conser 77.1 1.4E+02 0.003 34.4 16.4 97 170-271 853-957 (1610)
322 PF12830 Nipped-B_C: Sister ch 76.6 51 0.0011 28.8 12.5 71 117-193 9-79 (187)
323 KOG0392 SNF2 family DNA-depend 76.4 35 0.00075 38.4 11.7 236 74-317 78-328 (1549)
324 KOG1788 Uncharacterized conser 76.2 1.4E+02 0.003 33.4 19.2 78 363-441 901-981 (2799)
325 cd08050 TAF6 TATA Binding Prot 75.9 17 0.00037 35.4 8.8 103 74-188 179-297 (343)
326 PF08711 Med26: TFIIS helical 75.7 9.5 0.00021 25.2 5.0 35 459-493 13-48 (53)
327 cd00197 VHS_ENTH_ANTH VHS, ENT 75.5 15 0.00032 29.1 7.0 71 414-494 38-114 (115)
328 cd00183 TFIIS_I N-terminal dom 74.8 13 0.00029 26.9 6.0 36 459-494 37-72 (76)
329 PF04869 Uso1_p115_head: Uso1 74.7 81 0.0018 30.2 13.5 145 298-444 51-233 (312)
330 KOG4464 Signaling protein RIC- 74.7 42 0.00091 32.8 10.6 154 205-358 49-232 (532)
331 PF04821 TIMELESS: Timeless pr 74.0 77 0.0017 29.6 14.0 64 69-146 9-72 (266)
332 PF11538 Snurportin1: Snurport 73.6 3.6 7.7E-05 25.4 2.2 38 11-49 2-39 (40)
333 PF04499 SAPS: SIT4 phosphatas 73.2 34 0.00073 34.9 10.4 84 361-444 53-150 (475)
334 KOG2213 Apoptosis inhibitor 5/ 72.7 99 0.0021 30.2 18.9 250 72-337 24-289 (460)
335 PF10274 ParcG: Parkin co-regu 71.5 68 0.0015 27.8 11.4 81 285-367 38-119 (183)
336 PF08767 CRM1_C: CRM1 C termin 71.3 88 0.0019 30.1 12.4 185 259-446 43-248 (319)
337 KOG2213 Apoptosis inhibitor 5/ 68.9 1.2E+02 0.0026 29.7 19.8 255 164-442 30-314 (460)
338 PF12726 SEN1_N: SEN1 N termin 68.6 87 0.0019 34.2 13.1 145 74-233 442-587 (727)
339 cd00197 VHS_ENTH_ANTH VHS, ENT 67.1 33 0.00071 27.1 7.3 70 371-440 38-113 (115)
340 PF08767 CRM1_C: CRM1 C termin 66.4 1.3E+02 0.0028 29.0 14.8 180 301-495 43-244 (319)
341 PF11791 Aconitase_B_N: Aconit 66.0 39 0.00084 28.1 7.3 102 243-357 22-123 (154)
342 cd08050 TAF6 TATA Binding Prot 65.4 69 0.0015 31.2 10.4 112 242-355 209-338 (343)
343 COG5110 RPN1 26S proteasome re 65.0 1.7E+02 0.0037 30.0 17.4 91 301-404 620-710 (881)
344 KOG1410 Nuclear transport rece 64.0 2E+02 0.0043 30.4 22.8 300 74-399 6-334 (1082)
345 PF04388 Hamartin: Hamartin pr 63.8 1.6E+02 0.0035 31.7 13.6 70 287-358 72-141 (668)
346 KOG2073 SAP family cell cycle 63.1 88 0.0019 34.2 11.4 65 360-424 180-251 (838)
347 KOG2199 Signal transducing ada 63.1 20 0.00044 34.6 6.0 78 413-500 45-123 (462)
348 KOG1788 Uncharacterized conser 63.0 2.6E+02 0.0057 31.4 17.3 231 71-318 464-715 (2799)
349 PF12783 Sec7_N: Guanine nucle 63.0 62 0.0013 27.6 8.8 108 88-199 37-157 (168)
350 PF09324 DUF1981: Domain of un 63.0 13 0.00027 27.7 3.9 70 198-267 14-83 (86)
351 cd03565 VHS_Tom1 VHS domain fa 62.7 49 0.0011 27.3 7.7 74 371-444 39-117 (141)
352 KOG1087 Cytosolic sorting prot 62.4 36 0.00077 34.4 7.9 100 379-498 14-115 (470)
353 KOG0392 SNF2 family DNA-depend 62.0 45 0.00098 37.6 9.0 232 116-357 77-325 (1549)
354 KOG1410 Nuclear transport rece 62.0 2.2E+02 0.0047 30.2 17.3 311 162-493 8-332 (1082)
355 PF12054 DUF3535: Domain of un 61.7 1.6E+02 0.0034 29.9 12.5 304 173-489 101-437 (441)
356 PF04499 SAPS: SIT4 phosphatas 60.6 1.4E+02 0.003 30.6 11.9 74 403-476 52-128 (475)
357 KOG2149 Uncharacterized conser 60.2 84 0.0018 30.8 9.6 115 328-445 59-173 (393)
358 PF08216 CTNNBL: Catenin-beta- 59.7 12 0.00026 29.1 3.2 42 135-177 64-105 (108)
359 KOG1988 Uncharacterized conser 59.4 2.2E+02 0.0048 31.0 13.0 251 76-357 27-281 (970)
360 KOG0301 Phospholipase A2-activ 59.3 2.4E+02 0.0052 29.8 17.5 160 131-295 558-726 (745)
361 PF06012 DUF908: Domain of Unk 59.1 42 0.00092 32.4 7.8 61 107-167 254-324 (329)
362 PF09758 FPL: Uncharacterised 58.2 86 0.0019 26.1 8.2 123 148-270 15-147 (149)
363 cd03565 VHS_Tom1 VHS domain fa 57.6 1.1E+02 0.0024 25.3 10.5 97 381-497 16-117 (141)
364 PF12074 DUF3554: Domain of un 57.3 1.9E+02 0.0041 28.0 17.4 192 202-401 23-237 (339)
365 PF08389 Xpo1: Exportin 1-like 57.3 42 0.0009 27.6 6.7 142 131-309 2-148 (148)
366 KOG0889 Histone acetyltransfer 57.0 5.6E+02 0.012 33.3 20.3 315 116-442 984-1346(3550)
367 PF08713 DNA_alkylation: DNA a 56.3 1.4E+02 0.0031 26.3 12.3 141 119-284 54-196 (213)
368 PF04869 Uso1_p115_head: Uso1 55.4 2E+02 0.0043 27.6 15.6 157 243-399 34-231 (312)
369 KOG1992 Nuclear export recepto 55.4 3.1E+02 0.0067 29.9 26.0 317 76-401 40-437 (960)
370 smart00802 UME Domain in UVSB 55.3 77 0.0017 24.8 7.1 80 327-411 11-95 (107)
371 PF11791 Aconitase_B_N: Aconit 54.3 42 0.00092 27.8 5.7 43 176-230 80-122 (154)
372 KOG2149 Uncharacterized conser 53.9 2.3E+02 0.0049 27.9 11.7 131 245-379 60-191 (393)
373 PF01417 ENTH: ENTH domain; I 53.8 52 0.0011 26.4 6.4 97 382-495 15-121 (125)
374 PF08389 Xpo1: Exportin 1-like 53.5 54 0.0012 26.9 6.7 125 218-352 4-148 (148)
375 PF09758 FPL: Uncharacterised 51.7 18 0.00039 30.0 3.3 125 316-440 15-147 (149)
376 KOG2021 Nuclear mRNA export fa 51.5 3.4E+02 0.0075 29.3 18.3 57 86-148 206-262 (980)
377 KOG2199 Signal transducing ada 51.2 55 0.0012 31.8 6.7 73 370-442 45-118 (462)
378 PF06012 DUF908: Domain of Unk 51.0 93 0.002 30.1 8.7 77 132-209 237-324 (329)
379 KOG1087 Cytosolic sorting prot 50.0 1.1E+02 0.0024 31.0 9.1 71 371-441 39-111 (470)
380 KOG2038 CAATT-binding transcri 49.5 3.7E+02 0.008 29.1 16.2 101 160-270 305-407 (988)
381 PF03130 HEAT_PBS: PBS lyase H 49.5 15 0.00033 20.2 1.8 14 344-357 1-14 (27)
382 PF08216 CTNNBL: Catenin-beta- 47.6 21 0.00046 27.7 2.9 41 389-431 65-105 (108)
383 KOG3132 m3G-cap-specific nucle 47.2 14 0.0003 32.9 2.0 45 10-54 24-68 (325)
384 PF12054 DUF3535: Domain of un 47.1 2.1E+02 0.0045 29.1 10.6 79 87-170 101-179 (441)
385 PLN03205 ATR interacting prote 45.8 3.1E+02 0.0066 27.0 12.7 161 241-402 321-519 (652)
386 PF06743 FAST_1: FAST kinase-l 45.6 68 0.0015 22.8 5.1 67 221-288 3-69 (71)
387 PF08713 DNA_alkylation: DNA a 45.3 64 0.0014 28.7 6.3 78 285-370 120-197 (213)
388 KOG2038 CAATT-binding transcri 45.0 4.4E+02 0.0095 28.6 22.3 149 72-231 229-409 (988)
389 COG5110 RPN1 26S proteasome re 44.8 3.7E+02 0.0081 27.8 14.1 207 285-496 47-302 (881)
390 KOG4524 Uncharacterized conser 43.9 92 0.002 34.2 7.7 96 241-338 801-900 (1014)
391 PF01365 RYDR_ITPR: RIH domain 43.7 85 0.0018 27.9 6.7 95 343-443 76-170 (207)
392 KOG2073 SAP family cell cycle 43.5 4.9E+02 0.011 28.8 18.7 39 194-232 183-221 (838)
393 PF09324 DUF1981: Domain of un 41.5 85 0.0018 23.3 5.3 66 324-394 14-83 (86)
394 KOG0889 Histone acetyltransfer 41.1 9.6E+02 0.021 31.4 16.8 177 200-379 1125-1328(3550)
395 PF15178 TOM_sub5: Mitochondri 40.3 39 0.00084 21.4 2.6 23 16-38 7-30 (51)
396 COG5101 CRM1 Importin beta-rel 39.8 4.8E+02 0.01 27.6 18.7 408 75-492 190-649 (1053)
397 PF14631 FancD2: Fanconi anaem 39.8 3E+02 0.0064 32.8 11.6 141 249-397 441-581 (1426)
398 KOG2676 Uncharacterized conser 39.5 45 0.00098 31.9 4.2 64 137-200 376-441 (478)
399 KOG2549 Transcription initiati 39.4 4.5E+02 0.0098 27.2 12.6 140 163-313 211-369 (576)
400 smart00567 EZ_HEAT E-Z type HE 38.4 62 0.0013 18.1 3.3 13 343-355 2-14 (30)
401 KOG1924 RhoA GTPase effector D 37.7 5.7E+02 0.012 27.8 14.8 153 300-491 207-360 (1102)
402 KOG2011 Sister chromatid cohes 37.4 6.6E+02 0.014 28.5 15.2 135 295-441 297-434 (1048)
403 PF12783 Sec7_N: Guanine nucle 36.7 2.6E+02 0.0057 23.7 9.4 80 279-359 67-148 (168)
404 PF12397 U3snoRNP10: U3 small 36.4 2.2E+02 0.0047 22.6 7.8 68 160-233 7-76 (121)
405 PF07923 N1221: N1221-like pro 36.2 58 0.0012 30.9 4.6 107 368-474 58-199 (293)
406 KOG1791 Uncharacterized conser 35.8 3.7E+02 0.0081 31.6 10.9 198 111-340 1434-1641(1758)
407 KOG4524 Uncharacterized conser 35.1 1.5E+02 0.0033 32.6 7.7 95 285-381 803-900 (1014)
408 KOG2085 Serine/threonine prote 34.7 3.8E+02 0.0081 26.6 9.5 218 130-354 146-367 (457)
409 PF08064 UME: UME (NUC010) dom 32.6 2.4E+02 0.0052 21.9 7.8 80 327-411 11-95 (107)
410 PF14666 RICTOR_M: Rapamycin-i 32.3 3.8E+02 0.0083 24.2 13.1 129 257-398 78-224 (226)
411 PF14663 RasGEF_N_2: Rapamycin 31.0 2.7E+02 0.0058 22.0 10.9 101 371-495 9-110 (115)
412 TIGR01385 TFSII transcription 30.9 1.2E+02 0.0026 28.8 5.7 37 459-495 37-73 (299)
413 KOG2140 Uncharacterized conser 30.9 6.1E+02 0.013 26.2 11.1 71 362-438 230-300 (739)
414 KOG0803 Predicted E3 ubiquitin 30.4 9.6E+02 0.021 28.3 15.2 200 287-493 43-261 (1312)
415 PF12463 DUF3689: Protein of u 28.4 5.3E+02 0.011 24.6 12.2 83 284-366 94-182 (303)
416 PF10257 RAI16-like: Retinoic 27.5 5.8E+02 0.013 25.0 10.0 121 321-444 3-157 (353)
417 PF12765 Cohesin_HEAT: HEAT re 27.2 51 0.0011 20.6 1.8 40 308-351 2-41 (42)
418 PF04118 Dopey_N: Dopey, N-ter 26.7 5.7E+02 0.012 24.4 13.4 136 205-350 58-194 (307)
419 PF14666 RICTOR_M: Rapamycin-i 26.7 4.8E+02 0.01 23.6 13.0 131 87-231 78-225 (226)
420 PF14631 FancD2: Fanconi anaem 26.6 1.2E+03 0.026 28.1 20.7 105 329-441 437-541 (1426)
421 cd06561 AlkD_like A new struct 26.2 2.8E+02 0.006 24.1 7.1 74 288-368 108-181 (197)
422 PF14663 RasGEF_N_2: Rapamycin 26.1 1.5E+02 0.0032 23.5 4.6 39 117-157 9-47 (115)
423 PF10257 RAI16-like: Retinoic 24.8 6.6E+02 0.014 24.6 12.6 130 279-411 3-169 (353)
424 cd06561 AlkD_like A new struct 24.7 1.9E+02 0.0042 25.1 5.8 73 330-410 108-180 (197)
425 COG2914 Uncharacterized protei 24.6 41 0.00089 25.3 1.1 30 9-38 67-97 (99)
426 KOG1791 Uncharacterized conser 24.0 1.3E+03 0.028 27.6 14.1 183 241-426 1437-1641(1758)
427 PF04510 DUF577: Family of unk 24.0 4.7E+02 0.01 22.5 12.1 155 329-495 5-164 (174)
428 PF07571 DUF1546: Protein of u 23.7 2.2E+02 0.0048 21.4 5.0 59 85-145 18-77 (92)
429 PF08623 TIP120: TATA-binding 23.6 3.9E+02 0.0084 22.9 6.9 94 215-312 40-145 (169)
430 KOG2676 Uncharacterized conser 21.5 86 0.0019 30.1 2.8 56 178-233 375-431 (478)
431 PF04064 DUF384: Domain of unk 21.3 2.8E+02 0.006 18.9 5.9 43 458-500 11-54 (58)
432 PF01365 RYDR_ITPR: RIH domain 21.0 2.5E+02 0.0054 24.9 5.7 79 131-212 75-153 (207)
433 PF13925 Katanin_con80: con80 20.9 5.2E+02 0.011 21.9 7.5 72 201-273 28-99 (164)
434 PF07923 N1221: N1221-like pro 20.7 2.4E+02 0.0051 26.8 5.8 54 73-126 60-126 (293)
435 PF04510 DUF577: Family of unk 20.5 5.5E+02 0.012 22.1 11.2 150 288-443 6-165 (174)
436 PLN03205 ATR interacting prote 20.1 5.5E+02 0.012 25.4 7.8 114 286-399 324-446 (652)
No 1
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=3.6e-88 Score=596.69 Aligned_cols=514 Identities=53% Similarity=0.837 Sum_probs=468.2
Q ss_pred CCchHhhhhcCC--CCCchHHhhhhhhHHHHHHHHhhhHHHHhhhhccccCCCCCccCCCCCchhhhcCCHHHHHHhhcC
Q 009636 7 SKADSRRNKYKV--AVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGVWS 84 (530)
Q Consensus 7 ~~~~~~~~~~k~--~~~~~e~~~~r~~~~~~lRk~~r~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~s 84 (530)
+.+++|+.+||. .++++|+||||++.+++|||+||++.++||||.....+...++ -.+..++....+|.+.+.|.|
T Consensus 5 f~p~~Rr~~fk~Kg~f~adelRr~ReeQQvElRkqKreE~LnKrRNl~dv~e~a~ss--~i~meqq~~~elp~lt~~l~S 82 (526)
T COG5064 5 FVPEARRYNFKGKGRFSADELRRRREEQQVELRKQKREELLNKRRNLADVSEEAESS--FIPMEQQFYSELPQLTQQLFS 82 (526)
T ss_pred cchHHHHhcccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhhc--cCchhHHhhhhhHHHHHHHhh
Confidence 367889999998 4889999999999999999999999999999983322211111 012233334578999999999
Q ss_pred CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHH
Q 009636 85 NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIF 164 (530)
Q Consensus 85 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L 164 (530)
+|-+.|..|...+|+++|.+.+|+++.+++.|++|.++++|.......++++|+|+|+|+++++..+++.+++.|++|.+
T Consensus 83 dDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlf 162 (526)
T COG5064 83 DDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLF 162 (526)
T ss_pred hHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHH
Confidence 99999999999999999999999999999999999999999654436889999999999999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCC-chhHHHHHHHHhhhhccCC-CCCChhhhh
Q 009636 165 VKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP-KLSMLRNATWTLSNFCRGK-PQPPFDQVS 242 (530)
Q Consensus 165 ~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~-~~~~~~~a~~~L~~L~~~~-~~~~~~~~~ 242 (530)
+++|.+++.+++++++|+|+|++++++.+|+.++..|++.+++.++..+. +..+.+++.|+|+|||++. |.+......
T Consensus 163 iqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~is 242 (526)
T COG5064 163 IQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNIS 242 (526)
T ss_pred HHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHH
Confidence 99999999999999999999999999999999999999999999996433 5799999999999999998 777788889
Q ss_pred chHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHH
Q 009636 243 PALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQC 322 (530)
Q Consensus 243 ~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~ 322 (530)
..+|.|.+++.+.|+++..++||+++++++.+.+.++.+++.|+..+|+++|.+++..++.+|++.+||+++|++.+++.
T Consensus 243 qalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqv 322 (526)
T COG5064 243 QALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQV 322 (526)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceeh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCC-
Q 009636 323 VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG- 401 (530)
Q Consensus 323 ~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~- 401 (530)
+++.|+++.+..+|+++ ...+|++|||+++|+++|+.++++.+++.+++|+|+++|...+..++++||||+.|.+.++
T Consensus 323 iI~~G~L~a~~~lLs~~-ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~ 401 (526)
T COG5064 323 IINCGALKAFRSLLSSP-KENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGL 401 (526)
T ss_pred heecccHHHHHHHhcCh-hhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 99999999999999999 8899999999999999999999999999999999999999999999999999999999977
Q ss_pred -CHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCH
Q 009636 402 -THEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNA 480 (530)
Q Consensus 402 -~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~ 480 (530)
-|+.+++|+++|++++|+++|...+.++.+.+++++.++++.++..........|.|..++++.||++.|..+|++.|.
T Consensus 402 ~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~ 481 (526)
T COG5064 402 NRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNR 481 (526)
T ss_pred CCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhcccc
Confidence 4789999999999999999999999999999999999999999988777666788999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCCC--CCCCCCCCCCcccCCCCCCCCCCCCCc
Q 009636 481 EIYEKSVKLLETYWLDDEDET--MPPGDASQPGFGFGGNGNPPAPSGGFN 528 (530)
Q Consensus 481 ~v~~~a~~il~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (530)
+||.+|..||++||++++.-+ +|++.+ ..|+|.++. .+.|.|+
T Consensus 482 ~iy~KAYsIIe~fFgeeD~vd~lapet~g--~tftfg~~~---~~qg~f~ 526 (526)
T COG5064 482 TIYDKAYSIIEKFFGEEDAVDELAPETAG--NTFTFGSNV---NQQGNFN 526 (526)
T ss_pred HHHHHHHHHHHHHcccchhhhhcCccccC--CeeecCCCc---cccCCCC
Confidence 999999999999999887533 677654 378887664 4555453
No 2
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.7e-85 Score=623.99 Aligned_cols=508 Identities=65% Similarity=1.014 Sum_probs=461.1
Q ss_pred chHhhhhcCC-CCCchHHhhhhhhHHHHHHHHhhhHHHHhhhhccccCCCCCccCCCCCchhhhcCCHHHHHHhhcCCCh
Q 009636 9 ADSRRNKYKV-AVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGVWSNDS 87 (530)
Q Consensus 9 ~~~~~~~~k~-~~~~~e~~~~r~~~~~~lRk~~r~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~s~~~ 87 (530)
..+|+++||+ +++++|+||||++..+++||.||++.++|||+...+.... . .....+......+.++..+.|+++
T Consensus 5 ~~~~~~~~k~~~~~~~e~Rrrr~e~~veiRk~kree~l~k~R~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~S~~~ 80 (514)
T KOG0166|consen 5 SNNRRRRYKNKGVDAEEMRRRREEQVVEIRKNKREESLLKRRNDEEELMLD--E--LLSDSQSQASNLELMLAALYSDDP 80 (514)
T ss_pred hHHHHHHHhhccccHHHHHHhcchhHHHHHHHHHHHHHHHHhhhhhhcccc--c--ccchhHHHhhhhHHHHHHHhCCCH
Confidence 3467777776 6999999999999999999999999999999932221110 0 011112222347899999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHh
Q 009636 88 GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKL 167 (530)
Q Consensus 88 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l 167 (530)
..+..+...++++++...+|++..++..|++|.+|++|...+++.++.+|+|+|+|+++++++....+++.|++|.|+++
T Consensus 81 ~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~L 160 (514)
T KOG0166|consen 81 QQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQL 160 (514)
T ss_pred HHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHH
Confidence 99999999999999998899999999999999999999876669999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC-CCCChhhhhchHH
Q 009636 168 LYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALP 246 (530)
Q Consensus 168 l~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~l~ 246 (530)
+.+++..++++|+|+|+|++++++.+|+.++..|++++|+.++..+....+.++++|+|+|||+++ |.+.......++|
T Consensus 161 l~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp 240 (514)
T KOG0166|consen 161 LSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILP 240 (514)
T ss_pred hcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHH
Confidence 999999999999999999999999999999999999999999965555689999999999999999 8888899999999
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhc
Q 009636 247 ALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEY 326 (530)
Q Consensus 247 ~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~ 326 (530)
.|..++.+.|++++.++||+++||++++.+.++.+++.|+++.|+++|.+.++.++.+|++++||+++|++.+++.+++.
T Consensus 241 ~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~ 320 (514)
T KOG0166|consen 241 ALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINS 320 (514)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHH
Q 009636 327 QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQI 406 (530)
Q Consensus 327 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~ 406 (530)
|+++.|..++...+...++++|||+|+||++|+.++++.++++|++|.|+.+|+.++.++|++|+||++|++.+++++++
T Consensus 321 ~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi 400 (514)
T KOG0166|consen 321 GALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQI 400 (514)
T ss_pred ChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHH
Confidence 99999999999554777999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHH
Q 009636 407 KFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKS 486 (530)
Q Consensus 407 ~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a 486 (530)
.+|++.|++++|+++|...|.+++..+++++.++++.++......+ +++..+++++||+++|+.||+|+|++||++|
T Consensus 401 ~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~---n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A 477 (514)
T KOG0166|consen 401 KYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGT---NPLAIMIEEAGGLDKIENLQSHENEEIYKKA 477 (514)
T ss_pred HHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccc---cHHHHHHHHccChhHHHHhhccccHHHHHHH
Confidence 9999999999999999999999999999999999999998764321 7899999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCcC
Q 009636 487 VKLLETYWLDDEDETMPPGDASQPGFGFGGNGNPPAPSGGFNF 529 (530)
Q Consensus 487 ~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (530)
..||++||.++++++.... ...+|+|.++ .|.|+|||
T Consensus 478 ~~II~~yf~~e~~~~~~~~--~~~~~~~~~~----~~~~~f~f 514 (514)
T KOG0166|consen 478 YKIIDTYFSEEDDEDDQQP--TTSQFTFQVQ----APDGGFNF 514 (514)
T ss_pred HHHHHHhcCCCcccccccc--cccccccCCC----CCCCCCCC
Confidence 9999999998765542221 1126777655 38899998
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.1e-43 Score=337.04 Aligned_cols=368 Identities=26% Similarity=0.403 Sum_probs=329.4
Q ss_pred CCHHHHHHhhcC-CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009636 73 ENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151 (530)
Q Consensus 73 ~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~ 151 (530)
+.+|.+++.|.. .++.+|+.|+|+|.+++++. ....+.+++.|++|.|+.++.+++ ..++++|+|+|+|++.+++.+
T Consensus 109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgt-se~T~~vv~agavp~fi~Ll~s~~-~~v~eQavWALgNIagds~~~ 186 (514)
T KOG0166|consen 109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGT-SEQTKVVVDAGAVPIFIQLLSSPS-ADVREQAVWALGNIAGDSPDC 186 (514)
T ss_pred CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCc-hhhccccccCCchHHHHHHhcCCc-HHHHHHHHHHHhccccCChHH
Confidence 799999999985 55999999999999999986 677788899999999999999999 999999999999999999999
Q ss_pred HHHHHhCCChHHHHHhhCCCCH-HHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhc
Q 009636 152 TKVVIDHGAVPIFVKLLYSPSD-DVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC 230 (530)
Q Consensus 152 ~~~~~~~g~i~~L~~ll~~~~~-~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~ 230 (530)
++.+++.|+++.|+.++..++. .+..++.|+|+|+|.+.......-.-..+++.|..++ ++.|++++..+||++++|+
T Consensus 187 Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll-~~~D~~Vl~Da~WAlsyLs 265 (514)
T KOG0166|consen 187 RDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLL-HSTDEEVLTDACWALSYLT 265 (514)
T ss_pred HHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999987654 6888999999999977632222223345789999999 8999999999999999999
Q ss_pred cCC-CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhC-CCCchhHHHHHHH
Q 009636 231 RGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM-HPSPSVLIPALRT 308 (530)
Q Consensus 231 ~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~~~~~al~~ 308 (530)
.+. +........|++|.|+.+|.+.+..++..++++++|++.+++...+.++..|+++.|..++. +....++..|+|+
T Consensus 266 dg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~ 345 (514)
T KOG0166|consen 266 DGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWT 345 (514)
T ss_pred cCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHH
Confidence 887 44455667999999999999999999999999999999999999999999999999999999 5667799999999
Q ss_pred HhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHhCcHHHHHHHHhcCchhHH
Q 009636 309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQAVIEANIIGPLVALLENAEFDIK 387 (530)
Q Consensus 309 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 387 (530)
++||+.|+.++.+.+++.|++|.|+.+|+.. +.++|++|+|+++|++. ++++++.++++.|+|++|+.+|...|.++.
T Consensus 346 iSNItAG~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii 424 (514)
T KOG0166|consen 346 ISNITAGNQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKII 424 (514)
T ss_pred HHHhhcCCHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHH
Confidence 9999999999999999999999999999999 99999999999999998 789999999999999999999998899999
Q ss_pred HHHHHHHHHhhcCCC-------HHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhh
Q 009636 388 KEAAWAISNATSGGT-------HEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG 444 (530)
Q Consensus 388 ~~a~~aL~nl~~~~~-------~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~ 444 (530)
..++.+|.|+...+. ......+.+.|+++.+-.+-.+++.++-..|...+.+.+...
T Consensus 425 ~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~e 488 (514)
T KOG0166|consen 425 LVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFSEE 488 (514)
T ss_pred HHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcCCC
Confidence 999999999986442 234456667899999988888888899998888888776543
No 4
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=2.4e-43 Score=312.44 Aligned_cols=372 Identities=24% Similarity=0.342 Sum_probs=323.8
Q ss_pred Cchhhhc--CCHHHHHHhhc-CCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHH
Q 009636 66 PGTAKKL--ENLPVMVAGVW-SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALT 142 (530)
Q Consensus 66 ~~~~~~~--~~l~~l~~~l~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~ 142 (530)
++++..+ +.+|++++++. ....-.+++|+|+|.+++|+. ....+.+++.|++|.++++|.+++ .+++.+++|+|+
T Consensus 105 PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGt-t~QTkvVvd~~AVPlfiqlL~s~~-~~V~eQavWALG 182 (526)
T COG5064 105 PPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGT-TQQTKVVVDAGAVPLFIQLLSSTE-DDVREQAVWALG 182 (526)
T ss_pred CCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCc-ccceEEEEeCCchHHHHHHHcCch-HHHHHHHHHHhc
Confidence 4444433 68999999995 556668999999999999986 566777889999999999999998 899999999999
Q ss_pred HHhcCChhhHHHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHH
Q 009636 143 NIASGTSEHTKVVIDHGAVPIFVKLLYSP--SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLR 220 (530)
Q Consensus 143 ~l~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~ 220 (530)
|++.+++.+++.+.+.|++..++.++.+. +..+...+.|+|+|+|.+.....+.-.-...++.|.+++ .+.|+++..
T Consensus 183 NiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLi-ys~D~evlv 261 (526)
T COG5064 183 NIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLI-YSRDPEVLV 261 (526)
T ss_pred cccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHH-hhcCHHHHH
Confidence 99999999999999999999999999774 357889999999999965422222222233788889998 889999999
Q ss_pred HHHHHhhhhccCC-CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCc
Q 009636 221 NATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSP 299 (530)
Q Consensus 221 ~a~~~L~~L~~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~ 299 (530)
.|||++++|+.+. .........|+.+.|+.+|.+++..++..+++.++|+..+++.+.+.++..|+++.+..+|+++..
T Consensus 262 DA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke 341 (526)
T COG5064 262 DACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKE 341 (526)
T ss_pred HHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhh
Confidence 9999999999987 334445567888899999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC---CHHHHHHHHHhCcHHHHH
Q 009636 300 SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG---NREQIQAVIEANIIGPLV 376 (530)
Q Consensus 300 ~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~---~~~~~~~l~~~~~i~~L~ 376 (530)
.++..|||+++|+..|+.++.+.+++.+++|.|+++|.+. +..++++|||+++|.+++ -|+.+++++..|+|++|+
T Consensus 342 ~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~a-e~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc 420 (526)
T COG5064 342 NIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSA-EYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLC 420 (526)
T ss_pred hhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHH
Confidence 9999999999999999999999999999999999999998 999999999999999984 689999999999999999
Q ss_pred HHHhcCchhHHHHHHHHHHHhhcCCC---------H-HHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHH
Q 009636 377 ALLENAEFDIKKEAAWAISNATSGGT---------H-EQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENIL 441 (530)
Q Consensus 377 ~ll~~~~~~v~~~a~~aL~nl~~~~~---------~-~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll 441 (530)
.+|...+.++-+-++.++-|+...|. + .+..++-+.|+++.+..+-++.+.++-..|-.++..++
T Consensus 421 ~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fF 495 (526)
T COG5064 421 DLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFF 495 (526)
T ss_pred HHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHHc
Confidence 99999888888999999999987652 2 34445556899999999999999888888777666555
No 5
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=2e-39 Score=354.83 Aligned_cols=408 Identities=20% Similarity=0.215 Sum_probs=344.7
Q ss_pred cCCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009636 72 LENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151 (530)
Q Consensus 72 ~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~ 151 (530)
-+.+|.++..|.++++..|..|+..+.+++... .+.+..+++.|++|.|+++|.+++++.+|++|+|+|++|+.+++++
T Consensus 188 aGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~-ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~ 266 (2102)
T PLN03200 188 AGGVDILVKLLSSGNSDAQANAASLLARLMMAF-ESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEA 266 (2102)
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHH
Confidence 379999999999999999999999998887664 4578889999999999999987654799999999999999999999
Q ss_pred HHHHHhCCChHHHHHhhCCCC---------HHHHHHHHHHHHhhhCCCch-----------hhhh---HhhcCChHHHHH
Q 009636 152 TKVVIDHGAVPIFVKLLYSPS---------DDVREQAVWALGNIAGDSPR-----------CRDL---VLSQGGLVPLLA 208 (530)
Q Consensus 152 ~~~~~~~g~i~~L~~ll~~~~---------~~i~~~a~~~L~nl~~~~~~-----------~~~~---i~~~~~i~~Ll~ 208 (530)
++.+++.|+++.|+.++.+++ ..++++|+|+|+|||++.+. .|+. ....|++.+++.
T Consensus 267 r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~ 346 (2102)
T PLN03200 267 KQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALM 346 (2102)
T ss_pred HHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHH
Confidence 999999999999999997644 34689999999999987543 2221 134577888888
Q ss_pred hhcCCCchhHH----HHHHHHhhhhccCC-CCCChh-------------------hhhchHHHHHHhhcCCChhHHHHHH
Q 009636 209 QLNGQPKLSML----RNATWTLSNFCRGK-PQPPFD-------------------QVSPALPALAHLIHSNDDEVLTDAC 264 (530)
Q Consensus 209 ll~~~~~~~~~----~~a~~~L~~L~~~~-~~~~~~-------------------~~~~~l~~L~~ll~~~d~~v~~~a~ 264 (530)
++ +..+.... ..++|+|.+|+++. +..... ...++++.|+.++...+.+++..++
T Consensus 347 l~-d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av 425 (2102)
T PLN03200 347 VF-DSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELI 425 (2102)
T ss_pred hc-CCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHH
Confidence 77 44443333 35789999999987 332111 1245677888999999999999999
Q ss_pred HHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhH
Q 009636 265 WALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSI 344 (530)
Q Consensus 265 ~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v 344 (530)
|+|.+++.++.+..+.+.+.|+++.|+++|.+++..++..|++++++++.+++.++..+++.|++|.|+.+|.++ +..+
T Consensus 426 ~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~-~~~i 504 (2102)
T PLN03200 426 RALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG-SQKA 504 (2102)
T ss_pred HHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-CHHH
Confidence 999999999889999999999999999999999999999999999999999998888999999999999999998 9999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCC
Q 009636 345 KKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC 424 (530)
Q Consensus 345 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~ 424 (530)
+++|+|+|+|++.+++.....+.+.|+++.|+++|.++++++++.|+|+|.|++..++.+. ++.++.+|..
T Consensus 505 qeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~---------I~~Lv~LLls 575 (2102)
T PLN03200 505 KEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAAT---------ISQLTALLLG 575 (2102)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhH---------HHHHHHHhcC
Confidence 9999999999998754444444478999999999999999999999999999998776553 4677888999
Q ss_pred CChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCC
Q 009636 425 PDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDED 499 (530)
Q Consensus 425 ~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~~~~~ 499 (530)
+++.++..++.++.+++...+.... ........||++.|.+|+.++++++++.|.++|..||.+..+
T Consensus 576 dd~~~~~~aL~vLgnIlsl~~~~d~--------~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d 642 (2102)
T PLN03200 576 DLPESKVHVLDVLGHVLSVASLEDL--------VREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQD 642 (2102)
T ss_pred CChhHHHHHHHHHHHHHhhcchhHH--------HHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChH
Confidence 9999999999999999886654221 123344579999999999999999999999999999986544
No 6
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=1.1e-37 Score=341.31 Aligned_cols=415 Identities=19% Similarity=0.191 Sum_probs=367.7
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009636 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (530)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (530)
+.++.|+.+|...+.+.|..++++|..++.++ ...++.+.+.|++|.|+++|.+++ +.+|..|+|+|++++.++++++
T Consensus 404 daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~-~e~~~aIi~~ggIp~LV~LL~s~s-~~iQ~~A~~~L~nLa~~ndenr 481 (2102)
T PLN03200 404 EAKKVLVGLITMATADVQEELIRALSSLCCGK-GGLWEALGGREGVQLLISLLGLSS-EQQQEYAVALLAILTDEVDESK 481 (2102)
T ss_pred cchhhhhhhhccCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHH
Confidence 56788999999999999999999999997664 677889999999999999999988 8999999999999999889999
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009636 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (530)
Q Consensus 153 ~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~ 232 (530)
..+++.|++|.|+++|.+++..+++.|+|+|+|++.+.+..+..+...|++++|+++| .+.+...+..++|+|.+|+..
T Consensus 482 ~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL-~sgd~~~q~~Aa~AL~nLi~~ 560 (2102)
T PLN03200 482 WAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLL-KNGGPKGQEIAAKTLTKLVRT 560 (2102)
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999998887888888899999999999 677899999999999999754
Q ss_pred CCCCC--------------------------------------hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC
Q 009636 233 KPQPP--------------------------------------FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT 274 (530)
Q Consensus 233 ~~~~~--------------------------------------~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~ 274 (530)
..... .....++++.|+.++.++++.++..++|+|.+++.+.
T Consensus 561 ~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~ 640 (2102)
T PLN03200 561 ADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSR 640 (2102)
T ss_pred cchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 31110 0012478999999999999999999999999999999
Q ss_pred hHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCc-hhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHH
Q 009636 275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD-MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS 353 (530)
Q Consensus 275 ~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~ 353 (530)
.+..+.++..|+++.++.+|.+++..++..++++|++++.+.. .+...+++.|+++.|+.+|.+. +..++..|+.+|.
T Consensus 641 ~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~-d~~v~e~Al~ALa 719 (2102)
T PLN03200 641 QDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS-SIEVAEQAVCALA 719 (2102)
T ss_pred hHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC-ChHHHHHHHHHHH
Confidence 8888889999999999999999999999999999999997543 4455678999999999999998 9999999999999
Q ss_pred HHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHH-H-HHHHHcCChHHHHhccCCCChHHHH
Q 009636 354 NITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQ-I-KFLVIQGCIKPLCDLLVCPDPRIVT 431 (530)
Q Consensus 354 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~-~-~~l~~~~~i~~L~~lL~~~~~~~~~ 431 (530)
|++... +....+.+.|+++.|+++|++++++.|+.|+|+|.+++.+.+.++ . .++...|.+.+|+++|+..|.+...
T Consensus 720 nLl~~~-e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~ 798 (2102)
T PLN03200 720 NLLSDP-EVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSA 798 (2102)
T ss_pred HHHcCc-hHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhh
Confidence 998864 456677788999999999999999999999999999999876554 3 6667889999999999999888777
Q ss_pred H--HHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 009636 432 V--CLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLD 496 (530)
Q Consensus 432 ~--al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~~ 496 (530)
. ++++|..+.+..+.... ..+++...++..++++.|.....+.+|.++++|.++|+++-.+
T Consensus 799 ~~~al~~l~~l~~~~~~~~~----~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~ 861 (2102)
T PLN03200 799 TSEALEALALLARTKGGANF----SHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRD 861 (2102)
T ss_pred HHHHHHHHHHHHhhcccCCC----CCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhcc
Confidence 6 99999999986554433 3578999999999999997777999999999999999998663
No 7
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1e-29 Score=227.89 Aligned_cols=363 Identities=20% Similarity=0.221 Sum_probs=313.1
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009636 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (530)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (530)
+...+++..+++.++.+|..|..++.+++-. ....-.++..+.+..|+.-+..+. .++|..++.|++|++.. ++++
T Consensus 85 es~epvl~llqs~d~~Iq~aa~~alGnlAVn--~enk~liv~l~Gl~~Li~qmmtd~-vevqcnaVgCitnLaT~-d~nk 160 (550)
T KOG4224|consen 85 ESNEPVLALLQSCDKCIQCAAGEALGNLAVN--MENKGLIVSLLGLDLLILQMMTDG-VEVQCNAVGCITNLATF-DSNK 160 (550)
T ss_pred hhhhHHHHHHhCcchhhhhhhhhhhccceec--cCCceEEEeccChHHHHHHhcCCC-cEEEeeehhhhhhhhcc-ccch
Confidence 4678888899999999999999999998765 333334445555666554444444 58999999999999994 7788
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009636 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (530)
Q Consensus 153 ~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~ 232 (530)
..+...|++..+.++-++.+..++..+..+|.|+.... +.|+.++..|.++.|+.++ ++.+..++.+++.++++++-.
T Consensus 161 ~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~-EnRr~LV~aG~lpvLVsll-~s~d~dvqyycttaisnIaVd 238 (550)
T KOG4224|consen 161 VKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSR-ENRRVLVHAGGLPVLVSLL-KSGDLDVQYYCTTAISNIAVD 238 (550)
T ss_pred hhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhh-hhhhhhhccCCchhhhhhh-ccCChhHHHHHHHHhhhhhhh
Confidence 88999999999999888899999999999999997554 4789999999999999999 899999999999999999988
Q ss_pred CCCCChhhhh--chHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHh
Q 009636 233 KPQPPFDQVS--PALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG 310 (530)
Q Consensus 233 ~~~~~~~~~~--~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~ 310 (530)
.......... .++|.|+.++.++++.++-.+..+|.+++.... .+..++++|.+|.++++|+++........+.|+.
T Consensus 239 ~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~-Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIr 317 (550)
T KOG4224|consen 239 RRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTE-YQREIVEAGSLPLLVELLQSPMGPLILASVACIR 317 (550)
T ss_pred HHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccch-hhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHh
Confidence 6555554444 499999999999999999999999999987654 4566889999999999999998888899999999
Q ss_pred HhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHH
Q 009636 311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEA 390 (530)
Q Consensus 311 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a 390 (530)
|++...-. ...+++.|++.+|+.+|..+.+.+++-.|..+|.|++..+......+.+.|.+|.+++++.++...+|.+.
T Consensus 318 nisihplN-e~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqsei 396 (550)
T KOG4224|consen 318 NISIHPLN-EVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEI 396 (550)
T ss_pred hcccccCc-ccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHH
Confidence 99875432 23567999999999999998667799999999999999888889999999999999999999999999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhh
Q 009636 391 AWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGE 445 (530)
Q Consensus 391 ~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~ 445 (530)
..++..++.. .....+|.+.|+++.|+.++.+.+.+++.++..+|.++...-+
T Consensus 397 sac~a~Lal~--d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~ 449 (550)
T KOG4224|consen 397 SACIAQLALN--DNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVE 449 (550)
T ss_pred HHHHHHHHhc--cccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhH
Confidence 9999999985 3677889999999999999999999999999999999986543
No 8
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.4e-29 Score=223.88 Aligned_cols=363 Identities=19% Similarity=0.243 Sum_probs=317.5
Q ss_pred hcCCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChh
Q 009636 71 KLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE 150 (530)
Q Consensus 71 ~~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~ 150 (530)
.+..+..++..+..+..++|..++.++.+++.. ......+..+|.+..+.++-++.+ ..+|..+..+|.|++. +.+
T Consensus 124 ~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~--d~nk~kiA~sGaL~pltrLakskd-irvqrnatgaLlnmTh-s~E 199 (550)
T KOG4224|consen 124 SLLGLDLLILQMMTDGVEVQCNAVGCITNLATF--DSNKVKIARSGALEPLTRLAKSKD-IRVQRNATGALLNMTH-SRE 199 (550)
T ss_pred eccChHHHHHHhcCCCcEEEeeehhhhhhhhcc--ccchhhhhhccchhhhHhhcccch-hhHHHHHHHHHHHhhh-hhh
Confidence 456788888888888889999999999999877 466667888999999999877777 8999999999999999 789
Q ss_pred hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcC--ChHHHHHhhcCCCchhHHHHHHHHhhh
Q 009636 151 HTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQG--GLVPLLAQLNGQPKLSMLRNATWTLSN 228 (530)
Q Consensus 151 ~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~--~i~~Ll~ll~~~~~~~~~~~a~~~L~~ 228 (530)
+++.++..|++|.|+.++++.+..++..|..+|+||+.+.. .|+.+.+.+ .++.|+.++ ++++..++..|..+|.+
T Consensus 200 nRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~-~Rk~Laqaep~lv~~Lv~Lm-d~~s~kvkcqA~lALrn 277 (550)
T KOG4224|consen 200 NRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRR-ARKILAQAEPKLVPALVDLM-DDGSDKVKCQAGLALRN 277 (550)
T ss_pred hhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHH-HHHHHHhcccchHHHHHHHH-hCCChHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999998775 688888888 899999999 88899999999999999
Q ss_pred hccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCC-chhHHHHHH
Q 009636 229 FCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS-PSVLIPALR 307 (530)
Q Consensus 229 L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~~~~al~ 307 (530)
|+............|.+|.++++++++-.........|+.|++-++- +...+.+.|++..|+.+|..++ ..++..|..
T Consensus 278 lasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihpl-Ne~lI~dagfl~pLVrlL~~~dnEeiqchAvs 356 (550)
T KOG4224|consen 278 LASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPL-NEVLIADAGFLRPLVRLLRAGDNEEIQCHAVS 356 (550)
T ss_pred hcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccC-cccceecccchhHHHHHHhcCCchhhhhhHHH
Confidence 99988777777889999999999998877777777889999986654 2345788999999999999865 559999999
Q ss_pred HHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHH
Q 009636 308 TVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIK 387 (530)
Q Consensus 308 ~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 387 (530)
+|.|++..+......+.+.|.++.+..++.++ .-.++.+...+++.++.. ......+.+.|+++.|+.+..+.+.+++
T Consensus 357 tLrnLAasse~n~~~i~esgAi~kl~eL~lD~-pvsvqseisac~a~Lal~-d~~k~~lld~gi~~iLIp~t~s~s~Ev~ 434 (550)
T KOG4224|consen 357 TLRNLAASSEHNVSVIRESGAIPKLIELLLDG-PVSVQSEISACIAQLALN-DNDKEALLDSGIIPILIPWTGSESEEVR 434 (550)
T ss_pred HHHHHhhhhhhhhHHHhhcCchHHHHHHHhcC-ChhHHHHHHHHHHHHHhc-cccHHHHhhcCCcceeecccCccchhhc
Confidence 99999998888888899999999999999998 888999998899888764 3556778999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHc------CChHHHHhccCCCChHHHHHHHHHHHHHHHhh
Q 009636 388 KEAAWAISNATSGGTHEQIKFLVIQ------GCIKPLCDLLVCPDPRIVTVCLEGLENILKVG 444 (530)
Q Consensus 388 ~~a~~aL~nl~~~~~~~~~~~l~~~------~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~ 444 (530)
-.|+.+|.|++.. .++...+++. |+-..|.+++.+.+..+...+.|.+..++...
T Consensus 435 gNaAaAL~Nlss~--v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h 495 (550)
T KOG4224|consen 435 GNAAAALINLSSD--VEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLEDH 495 (550)
T ss_pred ccHHHHHHhhhhh--hHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhC
Confidence 9999999999984 4554554432 45567899999999999999999999888665
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.95 E-value=1.4e-24 Score=220.97 Aligned_cols=389 Identities=20% Similarity=0.186 Sum_probs=318.6
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 009636 76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV 155 (530)
Q Consensus 76 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~ 155 (530)
+++-.+++..+ .....++..|.+++.. ......|.+.|+++.|+++|++++ .++...++++|.+++. ..+++..+
T Consensus 253 kk~~~l~~kQe-qLlrv~~~lLlNLAed--~~ve~kM~~~~iV~~Lv~~Ldr~n-~ellil~v~fLkkLSi-~~ENK~~m 327 (708)
T PF05804_consen 253 KKLQTLIRKQE-QLLRVAFYLLLNLAED--PRVELKMVNKGIVSLLVKCLDREN-EELLILAVTFLKKLSI-FKENKDEM 327 (708)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHhcC--hHHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHcC-CHHHHHHH
Confidence 44444555433 3444677888888755 466678889999999999999887 8999999999999999 68899999
Q ss_pred HhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCC
Q 009636 156 IDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ 235 (530)
Q Consensus 156 ~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~ 235 (530)
.+.|+++.|.+++.+++..++..++++|.|++.+.. .|..+++.|++|.|+.++ .+ +..+..++.+|+++|.....
T Consensus 328 ~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~-~R~~mV~~GlIPkLv~LL-~d--~~~~~val~iLy~LS~dd~~ 403 (708)
T PF05804_consen 328 AESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPE-LRSQMVSLGLIPKLVELL-KD--PNFREVALKILYNLSMDDEA 403 (708)
T ss_pred HHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHH-HHHHHHHCCCcHHHHHHh-CC--CchHHHHHHHHHHhccCHhh
Confidence 999999999999999999999999999999987776 799999999999999999 33 34667799999999998876
Q ss_pred CChhhhhchHHHHHHhhcC-CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhc
Q 009636 236 PPFDQVSPALPALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT 314 (530)
Q Consensus 236 ~~~~~~~~~l~~L~~ll~~-~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~ 314 (530)
.......+++|.+++++.+ +++.+...+++.+.|++.... +.+.+++.++++.|+.........+ .+.++.|++.
T Consensus 404 r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~r-naqlm~~g~gL~~L~~ra~~~~D~l---LlKlIRNiS~ 479 (708)
T PF05804_consen 404 RSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKR-NAQLMCEGNGLQSLMKRALKTRDPL---LLKLIRNISQ 479 (708)
T ss_pred HHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHH-HHHHHHhcCcHHHHHHHHHhcccHH---HHHHHHHHHh
Confidence 6666777899999987654 567777778889999987764 5577888888999998865544322 4468889988
Q ss_pred CCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC--chhHHHHHHH
Q 009636 315 GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAW 392 (530)
Q Consensus 315 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~ 392 (530)
+++.....+. +.+..|+..+..+.+.+...++..+|+|+...+.+..+.+-+.+++|.|...|..+ ++++..+++.
T Consensus 480 h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi 557 (708)
T PF05804_consen 480 HDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVI 557 (708)
T ss_pred cCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHH
Confidence 7644333332 47778888888776789999999999999876655555566789999999999766 5689999999
Q ss_pred HHHHhhcCCCHHHHHHHHHcCChHHHHhccCC--CChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHH
Q 009636 393 AISNATSGGTHEQIKFLVIQGCIKPLCDLLVC--PDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEK 470 (530)
Q Consensus 393 aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~--~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 470 (530)
.++.++. +++....+.+.|+++.|+.+|.. +|.+++..++.+++.++...+. ...++.+.++...
T Consensus 558 ~~gtla~--d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~t-----------r~~ll~~~~~~~y 624 (708)
T PF05804_consen 558 LLGTLAS--DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEET-----------REVLLKETEIPAY 624 (708)
T ss_pred HHHHHHC--CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHH-----------HHHHHhccchHHH
Confidence 9999997 66788888899999999999974 5788999999999999988765 2556678899999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHH
Q 009636 471 IESLQTHDNAEIYEKSVKLLET 492 (530)
Q Consensus 471 l~~l~~~~~~~v~~~a~~il~~ 492 (530)
+..|+++.|++|++.|...++-
T Consensus 625 lidL~~d~N~~ir~~~d~~Ldi 646 (708)
T PF05804_consen 625 LIDLMHDKNAEIRKVCDNALDI 646 (708)
T ss_pred HHHHhcCCCHHHHHHHHHHHHH
Confidence 9999999999999888777763
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.94 E-value=1.4e-23 Score=213.68 Aligned_cols=362 Identities=19% Similarity=0.212 Sum_probs=304.0
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009636 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (530)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (530)
+.++.|++.|.+++.+....++..|.++... ..+...|.+.|+++.|++++.+++ ..++..++++|.|++. +++.+
T Consensus 290 ~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~--~ENK~~m~~~giV~kL~kLl~s~~-~~l~~~aLrlL~NLSf-d~~~R 365 (708)
T PF05804_consen 290 GIVSLLVKCLDRENEELLILAVTFLKKLSIF--KENKDEMAESGIVEKLLKLLPSEN-EDLVNVALRLLFNLSF-DPELR 365 (708)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHhcCCC-HHHHHHHHHHHHHhCc-CHHHH
Confidence 6899999999999999999999999999655 567889999999999999999988 8999999999999999 78899
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009636 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (530)
Q Consensus 153 ~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~ 232 (530)
..+++.|++|.|+.+|.++ ..+..|+.+|.+++.+.. .|..+...++++.+++++...++..+...+++.+.|++.+
T Consensus 366 ~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~-~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~ 442 (708)
T PF05804_consen 366 SQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDE-ARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALN 442 (708)
T ss_pred HHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHh-hHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcC
Confidence 9999999999999999754 466779999999998765 7889999999999999987777777888899999999999
Q ss_pred CCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC-CchhHHHHHHHHhH
Q 009636 233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP-SPSVLIPALRTVGN 311 (530)
Q Consensus 233 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~~~~al~~L~n 311 (530)
..+.......++++.|++........+ .+..+.|++.++......+. +++..|+.++..+ +++....++.+|+|
T Consensus 443 ~rnaqlm~~g~gL~~L~~ra~~~~D~l---LlKlIRNiS~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaN 517 (708)
T PF05804_consen 443 KRNAQLMCEGNGLQSLMKRALKTRDPL---LLKLIRNISQHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILAN 517 (708)
T ss_pred HHHHHHHHhcCcHHHHHHHHHhcccHH---HHHHHHHHHhcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHh
Confidence 876666666678888877654433222 34588899888754333332 5778888888764 67899999999999
Q ss_pred hhcCCchhhHHHhhcCchHHHHHhhcCCC-chhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC--chhHHH
Q 009636 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKK 388 (530)
Q Consensus 312 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~ 388 (530)
+...+......+-+.+++|.|..+|..+. .+++.-+++..++.++. ++.....+.+.|+++.|+.++... |.++..
T Consensus 518 L~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~Li~LL~~kqeDdE~Vl 596 (708)
T PF05804_consen 518 LTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTLIELLNAKQEDDEIVL 596 (708)
T ss_pred cccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHHHHHHHhhCchHHHHH
Confidence 99876666666667899999999998653 45789999999998875 467778888999999999999765 789999
Q ss_pred HHHHHHHHhhcCCCHHHHHHHH-HcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhh
Q 009636 389 EAAWAISNATSGGTHEQIKFLV-IQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKN 449 (530)
Q Consensus 389 ~a~~aL~nl~~~~~~~~~~~l~-~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~ 449 (530)
..++++..+..+. +.+..++ +.+++..|++++.+.++.++..|-.+|.-+..+.+.+..
T Consensus 597 Qil~~f~~ll~h~--~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w~~ 656 (708)
T PF05804_consen 597 QILYVFYQLLFHE--ETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEWAE 656 (708)
T ss_pred HHHHHHHHHHcCh--HHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHHHH
Confidence 9999999999964 5666766 468899999999999999999999999999988877653
No 11
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=3.5e-20 Score=183.30 Aligned_cols=389 Identities=20% Similarity=0.294 Sum_probs=314.4
Q ss_pred CHHHHHHhhcCC-ChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009636 74 NLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (530)
Q Consensus 74 ~l~~l~~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (530)
.+++|+..|+.. |+..|++|+..++.+++....+....+--..++|.|+.+|+...+.+++..|+++|++++.--|...
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence 568888888875 9999999999999999876555555444456899999999998889999999999999999889999
Q ss_pred HHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009636 153 KVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (530)
Q Consensus 153 ~~~~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~ 231 (530)
..+++.++||.|+.-|.. ...++.++++.+|-.|+...+. .+++.|++...+..+ +.....+++.|+.+..|.|.
T Consensus 248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~---AiL~AG~l~a~Lsyl-DFFSi~aQR~AlaiaaN~Ck 323 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK---AILQAGALSAVLSYL-DFFSIHAQRVALAIAANCCK 323 (1051)
T ss_pred heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH---HHHhcccHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 999999999999987765 7789999999999999988763 678999999999999 77789999999999999999
Q ss_pred CCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC---ChHHHHHHHHhCcHHHHHHhhCCC----CchhHHH
Q 009636 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG---TNDKIQAVIEAGVFPRLAEFLMHP----SPSVLIP 304 (530)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~l~~L~~lL~~~----~~~~~~~ 304 (530)
.-+...+..+...+|.|..+|...|....+.++.++.+++++ .++..+.+...|++....+++.-. +..+...
T Consensus 324 si~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~ 403 (1051)
T KOG0168|consen 324 SIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTG 403 (1051)
T ss_pred cCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhH
Confidence 988888888999999999999999999999999999999854 556778889999999999998764 3345667
Q ss_pred HHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCc-------------hh-HHHHHH---------------------
Q 009636 305 ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYK-------------KS-IKKEAC--------------------- 349 (530)
Q Consensus 305 al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-------------~~-v~~~a~--------------------- 349 (530)
.++++..++.+++-....++..++...|..+|..... |. +-...+
T Consensus 404 vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~ 483 (1051)
T KOG0168|consen 404 VIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSL 483 (1051)
T ss_pred HHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhhh
Confidence 7888999999888777777788888888777754100 00 000000
Q ss_pred ------------------------------HHHHHH-------------h---------cCCHHHHHHHHHhCcHHHHHH
Q 009636 350 ------------------------------WTVSNI-------------T---------AGNREQIQAVIEANIIGPLVA 377 (530)
Q Consensus 350 ------------------------------~~L~nl-------------~---------~~~~~~~~~l~~~~~i~~L~~ 377 (530)
.++..+ - ...++..+.++. .++|.|++
T Consensus 484 ~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~-~llpVLve 562 (1051)
T KOG0168|consen 484 IYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGK-DLLPVLVE 562 (1051)
T ss_pred hcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHH-HHHHHHHH
Confidence 111100 0 001122222222 47899999
Q ss_pred HHhcC-chhHHHHHHHHHHHhhcCCCHHHHHHHHHc-CChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCc
Q 009636 378 LLENA-EFDIKKEAAWAISNATSGGTHEQIKFLVIQ-GCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDV 455 (530)
Q Consensus 378 ll~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~-~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~ 455 (530)
++.+. ++.||..++.||..+++..+.+.+..++.. .+-..+..+|.++|..++.-+|.....|++..+..
T Consensus 563 VYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKlpd~-------- 634 (1051)
T KOG0168|consen 563 VYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKLPDT-------- 634 (1051)
T ss_pred HHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHhHHH--------
Confidence 88776 899999999999999999999998888755 55667888999999999999999999999876542
Q ss_pred hhhHHHhhhhccHHHHHHHhcC
Q 009636 456 NVFTQMIDDAEGLEKIESLQTH 477 (530)
Q Consensus 456 ~~~~~~l~~~~~~~~l~~l~~~ 477 (530)
|...|...|.+..+..|...
T Consensus 635 --F~~~F~REGV~~~v~~L~~~ 654 (1051)
T KOG0168|consen 635 --FSPSFRREGVFHAVKQLSVD 654 (1051)
T ss_pred --hhhhHhhhhHHHHHHHHhcc
Confidence 77889999999999999763
No 12
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.82 E-value=6e-18 Score=168.59 Aligned_cols=366 Identities=20% Similarity=0.230 Sum_probs=284.0
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCch--hh
Q 009636 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR--CR 194 (530)
Q Consensus 117 ~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~--~~ 194 (530)
-+|..+.+|.+.+ +.+|..|+.-+-.+|.++.+.+..+.+.|+|+.|+.++.+.+.+++.+|+|+|.||..+... .+
T Consensus 234 ~lpe~i~mL~~q~-~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK 312 (717)
T KOG1048|consen 234 TLPEVISMLMSQD-PSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK 312 (717)
T ss_pred ccHHHHHHHhccC-hhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence 4788899999888 99999999999999999999999999999999999999999999999999999999976654 66
Q ss_pred hhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcC--------------CChhHH
Q 009636 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS--------------NDDEVL 260 (530)
Q Consensus 195 ~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~--------------~d~~v~ 260 (530)
-.+.+.++++.++.++....|.++++.++.+|+||+..+ ..........++.|..-+-. .+.++.
T Consensus 313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D-~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf 391 (717)
T KOG1048|consen 313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND-ALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF 391 (717)
T ss_pred hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh-HHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceee
Confidence 678899999999999977789999999999999999984 44445556666666554321 136788
Q ss_pred HHHHHHHHHhccCChHHHHHHHH-hCcHHHHHHhhCC------CCchhHHHHHHHHhHhhcCCc----------------
Q 009636 261 TDACWALSYLSDGTNDKIQAVIE-AGVFPRLAEFLMH------PSPSVLIPALRTVGNIVTGDD---------------- 317 (530)
Q Consensus 261 ~~a~~~l~~l~~~~~~~~~~~~~-~~~l~~L~~lL~~------~~~~~~~~al~~L~nl~~~~~---------------- 317 (530)
.++..||.|++....+..+.+.+ .|+++.|+..+++ .+.+..++++.++.|++..-.
T Consensus 392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~ 471 (717)
T KOG1048|consen 392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIAR 471 (717)
T ss_pred ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccc
Confidence 89999999999866665555554 5889999888763 356677888888888864211
Q ss_pred ---------------hhhHH----------------------HhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCH
Q 009636 318 ---------------MQTQC----------------------VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360 (530)
Q Consensus 318 ---------------~~~~~----------------------~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~ 360 (530)
..... +....++..-+.+|....++.+.+.++.+|-|++++..
T Consensus 472 ~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~ 551 (717)
T KOG1048|consen 472 LPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLW 551 (717)
T ss_pred cccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCC
Confidence 00000 11123455545556544477889999999999998532
Q ss_pred ----HHHHHH-HHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCC------ChHH
Q 009636 361 ----EQIQAV-IEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP------DPRI 429 (530)
Q Consensus 361 ----~~~~~l-~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~------~~~~ 429 (530)
.....+ .+..+++.|++++..++..|...++.+|.|++.+. .. +.++-.++++.|++.|-.. +.++
T Consensus 552 ~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~--rn-k~ligk~a~~~lv~~Lp~~~~~~~~sedt 628 (717)
T KOG1048|consen 552 TWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI--RN-KELIGKYAIPDLVRCLPGSGPSTSLSEDT 628 (717)
T ss_pred cchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCc--hh-hhhhhcchHHHHHHhCcCCCCCcCchHHH
Confidence 223333 46789999999999999999999999999999953 33 4455688999999999643 3578
Q ss_pred HHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHh-cCCCHHHHHHHHHHHHHhCCCCC
Q 009636 430 VTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQ-THDNAEIYEKSVKLLETYWLDDE 498 (530)
Q Consensus 430 ~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~-~~~~~~v~~~a~~il~~~~~~~~ 498 (530)
+..++..|.+++..... ...-+-+.+|+++|..|. ...++.+.+.|..++..+|...+
T Consensus 629 v~~vc~tl~niv~~~~~-----------nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~e 687 (717)
T KOG1048|consen 629 VRAVCHTLNNIVRKNVL-----------NAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKE 687 (717)
T ss_pred HHHHHHhHHHHHHHhHH-----------HHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence 88899999999865543 244455699999999884 45677999999999999887533
No 13
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.78 E-value=3.2e-15 Score=151.51 Aligned_cols=398 Identities=18% Similarity=0.175 Sum_probs=301.8
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 009636 76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV 155 (530)
Q Consensus 76 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~ 155 (530)
+.+...+...+.+....++..|.+++... ..... ..+..+.|...|.+++ +.++..+++.|.+++..+......+
T Consensus 41 ~~lf~~L~~~~~e~v~~~~~iL~~~l~~~--~~~~l--~~~~~~~L~~gL~h~~-~~Vr~l~l~~l~~~~~~~~~~~~~~ 115 (503)
T PF10508_consen 41 PVLFDCLNTSNREQVELICDILKRLLSAL--SPDSL--LPQYQPFLQRGLTHPS-PKVRRLALKQLGRIARHSEGAAQLL 115 (503)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHhcc--CHHHH--HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCHHHHHHh
Confidence 34777888888888888889999998753 22222 4567889999999988 9999999999999999777777888
Q ss_pred HhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCC
Q 009636 156 IDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ 235 (530)
Q Consensus 156 ~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~ 235 (530)
.+.++++.++..+.+++..+...|+.+|.+++...+.. +.++..+.+..|..++ ...+..++..+..++.+++...+.
T Consensus 116 ~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~-~~~~~~vR~Rv~el~v~i~~~S~~ 193 (503)
T PF10508_consen 116 VDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLM-SQSSDIVRCRVYELLVEIASHSPE 193 (503)
T ss_pred cCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHH-hccCHHHHHHHHHHHHHHHhcCHH
Confidence 88999999999999999999999999999999877654 4566777788888888 555777888899999999887633
Q ss_pred -CChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCch-----hH-HHHHHH
Q 009636 236 -PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS-----VL-IPALRT 308 (530)
Q Consensus 236 -~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~-----~~-~~al~~ 308 (530)
.......|+++.++..+.++|.-++.+++.++..++. .+...+.+.+.|+++.|..++.+.+.+ +. ...+..
T Consensus 194 ~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f 272 (503)
T PF10508_consen 194 AAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKF 272 (503)
T ss_pred HHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHH
Confidence 3344457899999999999999999999999999998 455578899999999999999764322 22 233477
Q ss_pred HhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHH-HHh-C----cHHHHHHHHhcC
Q 009636 309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAV-IEA-N----IIGPLVALLENA 382 (530)
Q Consensus 309 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l-~~~-~----~i~~L~~ll~~~ 382 (530)
.++++...+....... ..++..+..++.+. ++..+..|.-+++.+++. .+....+ .+. + ++..+.....++
T Consensus 273 ~g~la~~~~~~v~~~~-p~~~~~l~~~~~s~-d~~~~~~A~dtlg~igst-~~G~~~L~~~~~~~~~~~l~~~~~~~~~~ 349 (503)
T PF10508_consen 273 FGNLARVSPQEVLELY-PAFLERLFSMLESQ-DPTIREVAFDTLGQIGST-VEGKQLLLQKQGPAMKHVLKAIGDAIKSG 349 (503)
T ss_pred HHHHHhcChHHHHHHH-HHHHHHHHHHhCCC-ChhHHHHHHHHHHHHhCC-HHHHHHHHhhcchHHHHHHHHHHHHhcCC
Confidence 8888875443321111 34666777777787 999999999999999864 4555555 332 2 344445555666
Q ss_pred chhHHHHHHHHHHHhhcCCCH---HH----HHHHH---HcCChH-HHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcC
Q 009636 383 EFDIKKEAAWAISNATSGGTH---EQ----IKFLV---IQGCIK-PLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLG 451 (530)
Q Consensus 383 ~~~v~~~a~~aL~nl~~~~~~---~~----~~~l~---~~~~i~-~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~ 451 (530)
..++|..++.+|.++...+.. +. .+... ..+... .+..+++.+=++++..++..|..++...-.
T Consensus 350 ~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg----- 424 (503)
T PF10508_consen 350 STELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWG----- 424 (503)
T ss_pred chHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHH-----
Confidence 789999999999999665432 11 11111 223455 788899899899999999999999877532
Q ss_pred CCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009636 452 NTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL 495 (530)
Q Consensus 452 ~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~ 495 (530)
...+....|.++.+.+=....+.+..+.=..++.++..
T Consensus 425 ------~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~ 462 (503)
T PF10508_consen 425 ------QREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAK 462 (503)
T ss_pred ------HHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHh
Confidence 24556667777777665666788888888888888764
No 14
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.77 E-value=1.7e-16 Score=158.32 Aligned_cols=364 Identities=20% Similarity=0.225 Sum_probs=277.4
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChh--h
Q 009636 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE--H 151 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~--~ 151 (530)
.+|+.+.+|.+.++.+|-.|+..+..+.-.. +.....+.+.|.|+.|+.+|.+.. .+++.+|+++|.|++.++.. +
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd-~~ik~~vrqlggI~kLv~Ll~~~~-~evq~~acgaLRNLvf~~~~~~N 311 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGD-NKIKSRVRQLGGIPKLVALLDHRN-DEVQRQACGALRNLVFGKSTDSN 311 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhh-HHHHHHHHHhccHHHHHHHhcCCc-HHHHHHHHHHHHhhhcccCCccc
Confidence 7899999999999999999999999775543 455556678999999999999998 99999999999999997765 8
Q ss_pred HHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcC-------------CCchh
Q 009636 152 TKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG-------------QPKLS 217 (530)
Q Consensus 152 ~~~~~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~-------------~~~~~ 217 (530)
.-.+.+.++|+.++++|+. .|.++++.+..+|+||++.+. ++..++. ..+..|...+.. -.+.+
T Consensus 312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~-lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~ 389 (717)
T KOG1048|consen 312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDA-LKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAEDST 389 (717)
T ss_pred chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhH-HHHHHHH-HHHHHHHHhhcccccccCCCCcccccccce
Confidence 8888899999999999987 789999999999999987743 5544443 356666554421 11467
Q ss_pred HHHHHHHHhhhhccCCC-C-CChhhhhchHHHHHHhhc------CCChhHHHHHHHHHHHhccCChH-----HHHH----
Q 009636 218 MLRNATWTLSNFCRGKP-Q-PPFDQVSPALPALAHLIH------SNDDEVLTDACWALSYLSDGTND-----KIQA---- 280 (530)
Q Consensus 218 ~~~~a~~~L~~L~~~~~-~-~~~~~~~~~l~~L~~ll~------~~d~~v~~~a~~~l~~l~~~~~~-----~~~~---- 280 (530)
+..+++.||.|++.... . ...-...|++..|+..++ ..|....++++..+.|++..-+. ..+.
T Consensus 390 vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~ 469 (717)
T KOG1048|consen 390 VFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANI 469 (717)
T ss_pred eeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcc
Confidence 89999999999998652 2 223445788888887776 23667778888888888743220 0000
Q ss_pred --------------------------------------------HHHhCcHHHHHHhhC-CCCchhHHHHHHHHhHhhcC
Q 009636 281 --------------------------------------------VIEAGVFPRLAEFLM-HPSPSVLIPALRTVGNIVTG 315 (530)
Q Consensus 281 --------------------------------------------~~~~~~l~~L~~lL~-~~~~~~~~~al~~L~nl~~~ 315 (530)
+....++..-..+|. +.++.+.+.++.+|-|++.+
T Consensus 470 ~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~ 549 (717)
T KOG1048|consen 470 ARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAG 549 (717)
T ss_pred cccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhcc
Confidence 001112222222222 34567888999999999987
Q ss_pred Cchh----hHHH-hhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC------ch
Q 009636 316 DDMQ----TQCV-IEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA------EF 384 (530)
Q Consensus 316 ~~~~----~~~~-~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~------~~ 384 (530)
.... ...+ ....+++.|+.+|..+ +..+.+.++.+|.|++.+- ..+.++..+.++.|++.|... +.
T Consensus 550 ~~~~~~~~~~~v~~kekgl~~l~~ll~~~-~~~vv~s~a~~LrNls~d~--rnk~ligk~a~~~lv~~Lp~~~~~~~~se 626 (717)
T KOG1048|consen 550 LWTWSEYMRGAVFRKEKGLPPLVELLRND-DSDVVRSAAGALRNLSRDI--RNKELIGKYAIPDLVRCLPGSGPSTSLSE 626 (717)
T ss_pred CCcchhHHHhhhhhhccCccHHHHHHhcC-CchHHHHHHHHHhhhccCc--hhhhhhhcchHHHHHHhCcCCCCCcCchH
Confidence 6533 2333 4678999999999999 9999999999999998752 234566678999999999655 36
Q ss_pred hHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCC-ChHHHHHHHHHHHHHHHhhh
Q 009636 385 DIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP-DPRIVTVCLEGLENILKVGE 445 (530)
Q Consensus 385 ~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~-~~~~~~~al~~l~~ll~~~~ 445 (530)
++...++.+|.|++.. +....+.+.+.+.++.|+.+..+. +++....+...|..|-.+.+
T Consensus 627 dtv~~vc~tl~niv~~-~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~e 687 (717)
T KOG1048|consen 627 DTVRAVCHTLNNIVRK-NVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKE 687 (717)
T ss_pred HHHHHHHHhHHHHHHH-hHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999975 678889999999999999888764 55888888888888776654
No 15
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.77 E-value=2.3e-15 Score=152.54 Aligned_cols=401 Identities=19% Similarity=0.188 Sum_probs=296.5
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 009636 76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV 155 (530)
Q Consensus 76 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~ 155 (530)
..+++.|... ...+.++..+..-+.. .+.... -..+.++.+|++.+ .+....++.+|..+.... .....
T Consensus 6 ~~~l~~l~~~--~~~~~~L~~l~~~~~~--~~~l~~----~~~~~lf~~L~~~~-~e~v~~~~~iL~~~l~~~-~~~~l- 74 (503)
T PF10508_consen 6 NELLEELSSK--AERLEALPELKTELSS--SPFLER----LPEPVLFDCLNTSN-REQVELICDILKRLLSAL-SPDSL- 74 (503)
T ss_pred HHHHHHHhcc--cchHHHHHHHHHHHhh--hhHHHh----chHHHHHHHHhhcC-hHHHHHHHHHHHHHHhcc-CHHHH-
Confidence 4455555543 3445566666554433 121221 22334788888776 677778888888888732 22222
Q ss_pred HhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCC
Q 009636 156 IDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ 235 (530)
Q Consensus 156 ~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~ 235 (530)
..+..+.|...|.++++.++..+++.|++++.++......+.+.++++.++.++ .+++..+...|+.+|..++...+.
T Consensus 75 -~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L-~~~d~~Va~~A~~~L~~l~~~~~~ 152 (503)
T PF10508_consen 75 -LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCL-RDPDLSVAKAAIKALKKLASHPEG 152 (503)
T ss_pred -HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHH-cCCcHHHHHHHHHHHHHHhCCchh
Confidence 346778999999999999999999999999988887778888899999999999 889999999999999999987654
Q ss_pred CChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcC
Q 009636 236 PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG 315 (530)
Q Consensus 236 ~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~ 315 (530)
.......+.++.|..++..+++.++..++.++.+++..+++....+.+.|+++.++..+.+++.-++..++.++..++.
T Consensus 153 ~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~- 231 (503)
T PF10508_consen 153 LEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE- 231 (503)
T ss_pred HHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-
Confidence 4444456668889999988888999999999999999999999999999999999999999888999999999999999
Q ss_pred CchhhHHHhhcCchHHHHHhhcCCC-ch---h-HHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHH
Q 009636 316 DDMQTQCVIEYQALPCLLNLLSGNY-KK---S-IKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEA 390 (530)
Q Consensus 316 ~~~~~~~~~~~~~l~~L~~lL~~~~-~~---~-v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a 390 (530)
.+...+.+.+.|+++.|..++.+.. ++ . .--......++++...+..+.... ..++..|.+++.+.|+..+..|
T Consensus 232 ~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~-p~~~~~l~~~~~s~d~~~~~~A 310 (503)
T PF10508_consen 232 TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELY-PAFLERLFSMLESQDPTIREVA 310 (503)
T ss_pred ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHH-HHHHHHHHHHhCCCChhHHHHH
Confidence 7777888999999999999997652 22 1 112233566777764444332222 2466677778888899999999
Q ss_pred HHHHHHhhcCCCHHHHHHH-HHcC-----ChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhh
Q 009636 391 AWAISNATSGGTHEQIKFL-VIQG-----CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDD 464 (530)
Q Consensus 391 ~~aL~nl~~~~~~~~~~~l-~~~~-----~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~ 464 (530)
..+++.++. +.+....| ...+ ++..+.........+++..++.++.+++...+.... ++-.+.....++.
T Consensus 311 ~dtlg~igs--t~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~--~~i~~~~~~w~~~ 386 (503)
T PF10508_consen 311 FDTLGQIGS--TVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQD--NDILSITESWYES 386 (503)
T ss_pred HHHHHHHhC--CHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCch--HHHHHHHHHHHHH
Confidence 999999987 55776666 3322 366666667778889999999999999876653111 0001111222222
Q ss_pred hc--cHH-HHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009636 465 AE--GLE-KIESLQTHDNAEIYEKSVKLLETYWL 495 (530)
Q Consensus 465 ~~--~~~-~l~~l~~~~~~~v~~~a~~il~~~~~ 495 (530)
.+ ... .+..+...|=+|++-.|..++...+.
T Consensus 387 ~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~ 420 (503)
T PF10508_consen 387 LSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAA 420 (503)
T ss_pred hcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 22 233 56777888999999999999987654
No 16
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.77 E-value=7.5e-17 Score=148.78 Aligned_cols=381 Identities=14% Similarity=0.108 Sum_probs=272.5
Q ss_pred CCChHHHHHHHHHHHHhhcCC--CCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCCh
Q 009636 84 SNDSGVQYECTTQFRKLLSIE--RSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAV 161 (530)
Q Consensus 84 s~~~~~~~~a~~~l~~l~~~~--~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i 161 (530)
..+..+...+..++.+....+ ++.....-++.+++..|.+..++++ .++..++.++|+|+|.++.+.|..+.+.|+-
T Consensus 53 ~~~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d-~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGa 131 (604)
T KOG4500|consen 53 TASDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPD-TEVHEQCFRALGNICYDNNENRAAFFNLGGA 131 (604)
T ss_pred eccchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCc-ccHHHHHHHHHhhhhccCchhHHHHHhcCCc
Confidence 344556666777777765331 0111223356778888888888886 8999999999999999999999999999997
Q ss_pred HHHHHhhCC----C---CHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc-CCCchhHHHHHHHHhhhhccCC
Q 009636 162 PIFVKLLYS----P---SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN-GQPKLSMLRNATWTLSNFCRGK 233 (530)
Q Consensus 162 ~~L~~ll~~----~---~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~-~~~~~~~~~~a~~~L~~L~~~~ 233 (530)
..++.+|+. + +.+....+...|.|..-++.+.+..+++.|++++|...+. ...+....+.....+.|+..-.
T Consensus 132 qivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~ 211 (604)
T KOG4500|consen 132 QIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFV 211 (604)
T ss_pred eehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHH
Confidence 777777754 2 3466777888999999999999999999999999988874 3445555565555555544332
Q ss_pred CC--CChhhhhchHHHHHHhhcCC-ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC-CCc-------hhH
Q 009636 234 PQ--PPFDQVSPALPALAHLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH-PSP-------SVL 302 (530)
Q Consensus 234 ~~--~~~~~~~~~l~~L~~ll~~~-d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~-------~~~ 302 (530)
.. ..+.....+...+++++.+. .+++.+-+...+.+.++++.-. -.+.+.|.+..++.++.. ... ...
T Consensus 212 ~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vk-l~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~ 290 (604)
T KOG4500|consen 212 CEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVK-LSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLF 290 (604)
T ss_pred HHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCccee-eehhhcchHHHHHHHHHhcccccchHHHHHHH
Confidence 11 11222234445566666543 5666777777888888776543 336777999999998876 211 223
Q ss_pred HHHHHHHhHhhcCCchhhHHHhhcC-chHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhc
Q 009636 303 IPALRTVGNIVTGDDMQTQCVIEYQ-ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLEN 381 (530)
Q Consensus 303 ~~al~~L~nl~~~~~~~~~~~~~~~-~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~ 381 (530)
..++....-+..|++.. +.+...+ ++..+..++.+. +......+..+|+|+++.+ +.+-++++.+++..|++++..
T Consensus 291 k~~~el~vllltGDeSM-q~L~~~p~~l~~~~sw~~S~-d~~l~t~g~LaigNfaR~D-~~ci~~v~~~~~nkL~~~l~~ 367 (604)
T KOG4500|consen 291 KRIAELDVLLLTGDESM-QKLHADPQFLDFLESWFRSD-DSNLITMGSLAIGNFARRD-DICIQLVQKDFLNKLISCLMQ 367 (604)
T ss_pred HhhhhHhhhhhcCchHH-HHHhcCcHHHHHHHHHhcCC-chhHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555665543 4555444 899999999999 9999999999999998875 556678888999999998854
Q ss_pred -----CchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCch
Q 009636 382 -----AEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVN 456 (530)
Q Consensus 382 -----~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~ 456 (530)
++.+++..++.||.|+.... .....++..|+.+.++..++...|.++..-++.+..+....+..
T Consensus 368 ~~~vdgnV~~qhA~lsALRnl~IPv--~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~--------- 436 (604)
T KOG4500|consen 368 EKDVDGNVERQHACLSALRNLMIPV--SNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYI--------- 436 (604)
T ss_pred hcCCCccchhHHHHHHHHHhccccC--CchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHH---------
Confidence 46789999999999999843 44567789999999999999999999998888888776555432
Q ss_pred hhHHHhhhhccHHHHHHHhcCCCHH
Q 009636 457 VFTQMIDDAEGLEKIESLQTHDNAE 481 (530)
Q Consensus 457 ~~~~~l~~~~~~~~l~~l~~~~~~~ 481 (530)
.++....-..+++|.+...+++..
T Consensus 437 -a~eL~kn~~l~ekLv~Wsks~D~a 460 (604)
T KOG4500|consen 437 -ACELAKNPELFEKLVDWSKSPDFA 460 (604)
T ss_pred -HHHHhcCHHHHHHHHHhhhCCccc
Confidence 233333334455666665555443
No 17
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.74 E-value=7.8e-16 Score=160.03 Aligned_cols=366 Identities=20% Similarity=0.209 Sum_probs=279.8
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC--CHHHHHHHHHHHHHHhcCChhh
Q 009636 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED--YPQLQFEAAWALTNIASGTSEH 151 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~--~~~i~~~a~~~L~~l~~~~~~~ 151 (530)
....++.++...|++ .-.+.|..+.+. ......+..+|.+|.|+++|.-++ +.+.+..|-.+|.||....++.
T Consensus 198 ts~sllsml~t~D~e---e~ar~fLemSss--~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~ 272 (2195)
T KOG2122|consen 198 TSNSLLSMLGTDDEE---EMARTFLEMSSS--PESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDE 272 (2195)
T ss_pred hhhHHhhhcccCCHH---HHHHHHHHhccC--chhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcch
Confidence 444666666666654 344555556444 456677889999999999997654 3678888999999999977665
Q ss_pred HHHHHhCCChHHHHHh----------hCC------C-CHHHH-HHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc--
Q 009636 152 TKVVIDHGAVPIFVKL----------LYS------P-SDDVR-EQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN-- 211 (530)
Q Consensus 152 ~~~~~~~g~i~~L~~l----------l~~------~-~~~i~-~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~-- 211 (530)
...-.+.-++..|-++ +.. + ..+-+ ..|+.+|..++.+. +.|...-+.|++..+-+++.
T Consensus 273 kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDE-EhR~aM~ELG~LqAIaeLl~vD 351 (2195)
T KOG2122|consen 273 KRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDE-EHRHAMNELGGLQAIAELLQVD 351 (2195)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccH-HHHHHHHHhhhHHHHHHHHHHH
Confidence 5443333333333221 111 1 11222 25667777776554 58999999999999988773
Q ss_pred ---------CCCchhHHHHHHHHhhhhccCCCCCC--hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHH
Q 009636 212 ---------GQPKLSMLRNATWTLSNFCRGKPQPP--FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQA 280 (530)
Q Consensus 212 ---------~~~~~~~~~~a~~~L~~L~~~~~~~~--~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~ 280 (530)
+.....+++++..+|.||..++...+ .--..|++..++..|.+..+++..-...+|.||+...+.+...
T Consensus 352 h~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKk 431 (2195)
T KOG2122|consen 352 HEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKK 431 (2195)
T ss_pred HHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHH
Confidence 11246789999999999999983322 2345899999999999988899999999999999776655554
Q ss_pred H-HHhCcHHHHHHh-hCCCCchhHHHHHHHHhHhhcCCchhhHHHh-hcCchHHHHHhhcCCC---chhHHHHHHHHHHH
Q 009636 281 V-IEAGVFPRLAEF-LMHPSPSVLIPALRTVGNIVTGDDMQTQCVI-EYQALPCLLNLLSGNY---KKSIKKEACWTVSN 354 (530)
Q Consensus 281 ~-~~~~~l~~L~~l-L~~~~~~~~~~al~~L~nl~~~~~~~~~~~~-~~~~l~~L~~lL~~~~---~~~v~~~a~~~L~n 354 (530)
+ -+.|-+..|+.. +...+.......+.+|+||+.++.+....+- -.|.+..|+.+|.... .-.+.+.|..+|.|
T Consensus 432 vLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRN 511 (2195)
T KOG2122|consen 432 VLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRN 511 (2195)
T ss_pred HHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHH
Confidence 4 456777777765 5556667888999999999988877665554 4599999999998752 34677888888888
Q ss_pred Hhc---CCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHH
Q 009636 355 ITA---GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVT 431 (530)
Q Consensus 355 l~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~ 431 (530)
+.. .+..+++.+.+++++..|+..|++.+..+..++|.+|+||+.. +++..++|++.|++..|..++.+++..+..
T Consensus 512 VSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR-~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~ 590 (2195)
T KOG2122|consen 512 VSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-SPEDQQMLWDDGAVPMLRNLIHSKHKMIAM 590 (2195)
T ss_pred HHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcC-CHHHHHHHHhcccHHHHHHHHhhhhhhhhh
Confidence 775 5778889999999999999999999999999999999999987 678889999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhh
Q 009636 432 VCLEGLENILKVGEA 446 (530)
Q Consensus 432 ~al~~l~~ll~~~~~ 446 (530)
-+..+|.|++..-+.
T Consensus 591 GSaaALrNLln~RPA 605 (2195)
T KOG2122|consen 591 GSAAALRNLLNFRPA 605 (2195)
T ss_pred hHHHHHHHHhcCCch
Confidence 999999999977643
No 18
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=1.7e-14 Score=129.38 Aligned_cols=317 Identities=16% Similarity=0.166 Sum_probs=249.9
Q ss_pred cCCHHHHHHhh---cCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHhhhCC
Q 009636 115 SGVVPRFVEFL---LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGD 189 (530)
Q Consensus 115 ~g~v~~Lv~ll---~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~i~~~a~~~L~nl~~~ 189 (530)
.|..+.++..+ .+++ ..+...++.+|..+..+.++ +++..+...++.+|.. .+.++....+..+..-|..
T Consensus 103 ~ga~~~~it~~~la~~~~-~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~ 177 (461)
T KOG4199|consen 103 NGAHDALITLLELAESPN-ESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIM 177 (461)
T ss_pred CCCcchhhhHHHHhhCCc-hhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 45555554433 3444 78888999999999886665 4556778888888854 6678888888888888888
Q ss_pred CchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCCh----------hhhhchHHHHHHhhcCC-Chh
Q 009636 190 SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF----------DQVSPALPALAHLIHSN-DDE 258 (530)
Q Consensus 190 ~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~----------~~~~~~l~~L~~ll~~~-d~~ 258 (530)
.+..|+.+++.++++.+...+.......+.+.++|++..|...+..... ....+++..|+..+... |+.
T Consensus 178 hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~ 257 (461)
T KOG4199|consen 178 HEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPD 257 (461)
T ss_pred hHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCcc
Confidence 8889999999999999988886555567999999999999887633211 12245677788888754 799
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCc-h---hHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHH
Q 009636 259 VLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSP-S---VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLN 334 (530)
Q Consensus 259 v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-~---~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~ 334 (530)
+....+.+|..++-.++ ..+.+.+.|+++.|+.++.+.+. . ....++..|..++ |++.....+++.|+++.++.
T Consensus 258 ~L~~l~~tl~~lAVr~E-~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA-G~DsvKs~IV~~gg~~~ii~ 335 (461)
T KOG4199|consen 258 SLVSLSTTLKALAVRDE-ICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA-GSDSVKSTIVEKGGLDKIIT 335 (461)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh-CCCchHHHHHHhcChHHHHH
Confidence 99999999999987654 45678899999999999988443 2 4456778888877 47777788999999999998
Q ss_pred hhc-CCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC--chhHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 009636 335 LLS-GNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATSGGTHEQIKFLVI 411 (530)
Q Consensus 335 lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~~ 411 (530)
++. +..+|.|..+++.+++-+|-..|++...+++.|+-...++.|+.. ...++++|+|++.|++.. +.+++..++.
T Consensus 336 l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~r-s~~~~~~~l~ 414 (461)
T KOG4199|consen 336 LALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVR-SAENRTILLA 414 (461)
T ss_pred HHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHh-hhhccchHHh
Confidence 874 333889999999999999999999999999999999999988765 467999999999999987 4567777666
Q ss_pred cCChHHHHhccCCCChHHHHHHHHHHHHH
Q 009636 412 QGCIKPLCDLLVCPDPRIVTVCLEGLENI 440 (530)
Q Consensus 412 ~~~i~~L~~lL~~~~~~~~~~al~~l~~l 440 (530)
.| ++.|+..-...++.....+-.+|.-+
T Consensus 415 ~G-iE~Li~~A~~~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 415 NG-IEKLIRTAKANHETCEAAAKAALRDL 442 (461)
T ss_pred cc-HHHHHHHHHhcCccHHHHHHHHHHhc
Confidence 55 77787877778887777666666654
No 19
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=3.4e-14 Score=147.05 Aligned_cols=361 Identities=17% Similarity=0.146 Sum_probs=256.8
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCh---h
Q 009636 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTS---E 150 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~---~ 150 (530)
.++-+.+..+|+++..|..|+..|..+...-++.....+ ..+.+.|.+.+.+++.+ ++..|+++++.++...+ .
T Consensus 119 ll~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~--~~l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~~~~ 195 (1075)
T KOG2171|consen 119 LLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHL--DDLLRLFSQTMTDPSSP-VRVAAVRALGAFAEYLENNKS 195 (1075)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhH--HHHHHHHHHhccCCcch-HHHHHHHHHHHHHHHhccchH
Confidence 344445556689999999999999988765322222111 23577788888888845 99999999999887553 3
Q ss_pred hHHHHHhCCChHHHHHhhCC----CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc-CCCchhHHHHHHHH
Q 009636 151 HTKVVIDHGAVPIFVKLLYS----PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN-GQPKLSMLRNATWT 225 (530)
Q Consensus 151 ~~~~~~~~g~i~~L~~ll~~----~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~-~~~~~~~~~~a~~~ 225 (530)
..+.+. ..+|.++..+.. .+......++.+|..++...|.+-...+.. ++...+.+.. ++-+..++..|+.+
T Consensus 196 ~~~~~~--~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~-ii~~~l~Ia~n~~l~~~~R~~ALe~ 272 (1075)
T KOG2171|consen 196 EVDKFR--DLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQ-IIQFSLEIAKNKELENSIRHLALEF 272 (1075)
T ss_pred HHHHHH--HHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHH-HHHHHHHHhhcccccHHHHHHHHHH
Confidence 333332 456777766643 566677889999999987776543333221 4555555553 34488999999999
Q ss_pred hhhhccCCCCCC---hhhhhchHHHHHHhhcCC--C--------------hhHHHHHHHHHHHhccCChHHHHHHHHhCc
Q 009636 226 LSNFCRGKPQPP---FDQVSPALPALAHLIHSN--D--------------DEVLTDACWALSYLSDGTNDKIQAVIEAGV 286 (530)
Q Consensus 226 L~~L~~~~~~~~---~~~~~~~l~~L~~ll~~~--d--------------~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~ 286 (530)
+..+++..|... ......+++.++.++... | ...-..+..++-.++.+-... .+-.-+
T Consensus 273 ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~---~v~p~~ 349 (1075)
T KOG2171|consen 273 LVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGK---QVLPPL 349 (1075)
T ss_pred HHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChh---hehHHH
Confidence 999998843221 224466677777766421 1 012233455555555432211 111235
Q ss_pred HHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 009636 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAV 366 (530)
Q Consensus 287 l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 366 (530)
++.+-.++.+.+|.-|..++.+|+.++.|+.......+ ..+++..+..|.++ ++.||..||.+++.++..-...++.-
T Consensus 350 ~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~Dp-hprVr~AA~naigQ~stdl~p~iqk~ 427 (1075)
T KOG2171|consen 350 FEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDP-HPRVRYAALNAIGQMSTDLQPEIQKK 427 (1075)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCC-CHHHHHHHHHHHHhhhhhhcHHHHHH
Confidence 67777889999999999999999999999987765533 47889999999999 99999999999999999777777777
Q ss_pred HHhCcHHHHHHHHhcC-chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChH-HHHhccCCCChHHHHHHHHHHHHHHHhh
Q 009636 367 IEANIIGPLVALLENA-EFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIK-PLCDLLVCPDPRIVTVCLEGLENILKVG 444 (530)
Q Consensus 367 ~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~-~L~~lL~~~~~~~~~~al~~l~~ll~~~ 444 (530)
...-+++.|+..+.+. +++|+..|+.++.|++..+..+.+...++ +++. .|..++.++.+.+++.++.+|..+....
T Consensus 428 ~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd-~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA 506 (1075)
T KOG2171|consen 428 HHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLD-GLMEKKLLLLLQSSKPYVQEQAVTAIASVADAA 506 (1075)
T ss_pred HHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Confidence 7778899999998876 68999999999999999877665544332 4455 5555667888899999999999998766
Q ss_pred hh
Q 009636 445 EA 446 (530)
Q Consensus 445 ~~ 446 (530)
+.
T Consensus 507 ~~ 508 (1075)
T KOG2171|consen 507 QE 508 (1075)
T ss_pred hh
Confidence 44
No 20
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=2.8e-14 Score=133.76 Aligned_cols=379 Identities=18% Similarity=0.127 Sum_probs=278.2
Q ss_pred ChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHH
Q 009636 86 DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFV 165 (530)
Q Consensus 86 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~ 165 (530)
.......|+..|.+++.. ...-..|....+|..||+.|+.++ .++.......|..++- ..+++..+.+.|++..|+
T Consensus 276 QeqLLrva~ylLlNlAed--~~~ElKMrrkniV~mLVKaLdr~n-~~Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveKL~ 351 (791)
T KOG1222|consen 276 QEQLLRVAVYLLLNLAED--ISVELKMRRKNIVAMLVKALDRSN-SSLLTLVIKFLKKLSI-FDENKIVMEQNGIVEKLL 351 (791)
T ss_pred HHHHHHHHHHHHHHHhhh--hhHHHHHHHHhHHHHHHHHHcccc-hHHHHHHHHHHHHhhh-hccchHHHHhccHHHHHH
Confidence 344555677777888754 344557888899999999999988 7888889999999988 678888899999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchH
Q 009636 166 KLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPAL 245 (530)
Q Consensus 166 ~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l 245 (530)
+++...+++++...+..+.|++.++. .|...+..|.+|.+..++.++.. ...|+..++.++.++..........++
T Consensus 352 klfp~~h~dL~~~tl~LlfNlSFD~g-lr~KMv~~GllP~l~~ll~~d~~---~~iA~~~lYh~S~dD~~K~MfayTdci 427 (791)
T KOG1222|consen 352 KLFPIQHPDLRKATLMLLFNLSFDSG-LRPKMVNGGLLPHLASLLDSDTK---HGIALNMLYHLSCDDDAKAMFAYTDCI 427 (791)
T ss_pred HhcCCCCHHHHHHHHHHhhhcccccc-ccHHHhhccchHHHHHHhCCccc---chhhhhhhhhhccCcHHHHHHHHHHHH
Confidence 99999999999999999999998876 78888899999999999943332 334667788888887666666778899
Q ss_pred HHHHHhhcC-CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHh
Q 009636 246 PALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVI 324 (530)
Q Consensus 246 ~~L~~ll~~-~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~ 324 (530)
+.+.+.+-+ .+.++-...+..-.|++-+. .+.+.+++...+..|++.--...... ....+.|++.+.......++
T Consensus 428 ~~lmk~v~~~~~~~vdl~lia~ciNl~lnk-RNaQlvceGqgL~~LM~ra~k~~D~l---LmK~vRniSqHeg~tqn~Fi 503 (791)
T KOG1222|consen 428 KLLMKDVLSGTGSEVDLALIALCINLCLNK-RNAQLVCEGQGLDLLMERAIKSRDLL---LMKVVRNISQHEGATQNMFI 503 (791)
T ss_pred HHHHHHHHhcCCceecHHHHHHHHHHHhcc-ccceEEecCcchHHHHHHHhcccchH---HHHHHHHhhhccchHHHHHH
Confidence 988876554 35555444433334555433 23455666666777776533322222 23456677765553433444
Q ss_pred hcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC--chhHHHHHHHHHHHhhcCCC
Q 009636 325 EYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATSGGT 402 (530)
Q Consensus 325 ~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~nl~~~~~ 402 (530)
+ .+..|...++...+...-.++..+++|++..+-+-...+-+.+++|.+-..|..+ ..++......+++.++. +
T Consensus 504 d--yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~--d 579 (791)
T KOG1222|consen 504 D--YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMAR--D 579 (791)
T ss_pred H--HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhh--h
Confidence 3 3556666666654677888999999999886656666666788999999988766 46788888889998888 4
Q ss_pred HHHHHHHHHcCChHHHHhccCC--CChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCH
Q 009636 403 HEQIKFLVIQGCIKPLCDLLVC--PDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNA 480 (530)
Q Consensus 403 ~~~~~~l~~~~~i~~L~~lL~~--~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~ 480 (530)
......+...++++.|+.+|+. .|.+++...+-.+..++..... -.-++.+...-..+..|++..|.
T Consensus 580 ~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~t-----------r~~miket~~~AylIDLMHDkN~ 648 (791)
T KOG1222|consen 580 LDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELT-----------RRLMIKETALGAYLIDLMHDKNA 648 (791)
T ss_pred hHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHH-----------HHHHHhhccchHHHHHHHhcccH
Confidence 4556666688999999999974 5667777777777777766322 25566777777789999999999
Q ss_pred HHHHHHHHHHH
Q 009636 481 EIYEKSVKLLE 491 (530)
Q Consensus 481 ~v~~~a~~il~ 491 (530)
+|++.+...++
T Consensus 649 eiRkVCDn~Ld 659 (791)
T KOG1222|consen 649 EIRKVCDNALD 659 (791)
T ss_pred HHHHHHHHHHH
Confidence 99877665554
No 21
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=4.9e-13 Score=125.52 Aligned_cols=361 Identities=15% Similarity=0.148 Sum_probs=277.3
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009636 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (530)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (530)
+.+.-+++.|..++.+........|.++.-. .++...|.+.|++..|++++...+ ++++...+..+.|++. +...+
T Consensus 304 niV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf--~eNK~~M~~~~iveKL~klfp~~h-~dL~~~tl~LlfNlSF-D~glr 379 (791)
T KOG1222|consen 304 NIVAMLVKALDRSNSSLLTLVIKFLKKLSIF--DENKIVMEQNGIVEKLLKLFPIQH-PDLRKATLMLLFNLSF-DSGLR 379 (791)
T ss_pred hHHHHHHHHHcccchHHHHHHHHHHHHhhhh--ccchHHHHhccHHHHHHHhcCCCC-HHHHHHHHHHhhhccc-ccccc
Confidence 4678888899988888887777778777444 567778889999999999999998 9999999999999999 67788
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009636 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (530)
Q Consensus 153 ~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~ 232 (530)
..++..|.+|.+..++.+.. -...|+..+..++.+.. .+..+....+++.+++.+....+..+-...+....|||.+
T Consensus 380 ~KMv~~GllP~l~~ll~~d~--~~~iA~~~lYh~S~dD~-~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~ln 456 (791)
T KOG1222|consen 380 PKMVNGGLLPHLASLLDSDT--KHGIALNMLYHLSCDDD-AKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLN 456 (791)
T ss_pred HHHhhccchHHHHHHhCCcc--cchhhhhhhhhhccCcH-HHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhc
Confidence 89999999999999997643 23457777888876665 7888888999999998886777788877778788899998
Q ss_pred CCCCChhhhhchHHHHHHh-hcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC-CchhHHHHHHHHh
Q 009636 233 KPQPPFDQVSPALPALAHL-IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP-SPSVLIPALRTVG 310 (530)
Q Consensus 233 ~~~~~~~~~~~~l~~L~~l-l~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~~~~al~~L~ 310 (530)
..+.........+..|... +...|.-+ ...+.+++.+.......+++ .+..|...++.. +......++.+++
T Consensus 457 kRNaQlvceGqgL~~LM~ra~k~~D~lL----mK~vRniSqHeg~tqn~Fid--yvgdLa~i~~nd~~E~F~~EClGtla 530 (791)
T KOG1222|consen 457 KRNAQLVCEGQGLDLLMERAIKSRDLLL----MKVVRNISQHEGATQNMFID--YVGDLAGIAKNDNSESFGLECLGTLA 530 (791)
T ss_pred cccceEEecCcchHHHHHHHhcccchHH----HHHHHHhhhccchHHHHHHH--HHHHHHHHhhcCchHHHHHHHHHHHh
Confidence 8777776666677776654 44444432 34567777665544444443 456666666654 4567888999999
Q ss_pred HhhcCCchhhHHHhhcCchHHHHHhhcCCC-chhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC--chhHH
Q 009636 311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIK 387 (530)
Q Consensus 311 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~ 387 (530)
|+.-..-.....+-..+++|++-..|..+- ..++.-...-.++.++.. ......+..+++++.|+++|+.. |.+..
T Consensus 531 nL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d-~~cA~Lla~a~~i~tlieLL~a~QeDDEfV 609 (791)
T KOG1222|consen 531 NLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD-LDCARLLAPAKLIDTLIELLQACQEDDEFV 609 (791)
T ss_pred hcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh-hHHHHHhCccccHHHHHHHHHhhcccchHH
Confidence 998877677766778899999999998653 345666666677777554 35555666789999999999765 67888
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHc-CChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhh
Q 009636 388 KEAAWAISNATSGGTHEQIKFLVIQ-GCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKN 449 (530)
Q Consensus 388 ~~a~~aL~nl~~~~~~~~~~~l~~~-~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~ 449 (530)
...++++..+..+ ...++.++.. ..-..|++++...+..++..+-.+|..+......+..
T Consensus 610 ~QiiyVF~Q~l~H--e~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~EWAK 670 (791)
T KOG1222|consen 610 VQIIYVFLQFLKH--ELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKEWAK 670 (791)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHHHHH
Confidence 8889999999886 3455666644 5566799999999999999999999988887776654
No 22
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.66 E-value=1.3e-13 Score=127.77 Aligned_cols=402 Identities=12% Similarity=0.078 Sum_probs=294.5
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCC---C---CHHHHHHHHHHHHHHhc
Q 009636 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE---D---YPQLQFEAAWALTNIAS 146 (530)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~---~---~~~i~~~a~~~L~~l~~ 146 (530)
+.++.+.+...|++.++-.+..++|.+++..+ ++.+..+.+.|+-..+++.|+.. + +.+.-.-+...|.|...
T Consensus 87 ~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn-~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l 165 (604)
T KOG4500|consen 87 EALELLRQTPSSPDTEVHEQCFRALGNICYDN-NENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL 165 (604)
T ss_pred HHHHHHHhCCCCCcccHHHHHHHHHhhhhccC-chhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence 46677788888888999999999999998765 78888888999877788777642 2 23555666778999999
Q ss_pred CChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHhhhCC-CchhhhhHhhcCChHHHHHhhcCCCchhHHHHHH
Q 009636 147 GTSEHTKVVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGD-SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNAT 223 (530)
Q Consensus 147 ~~~~~~~~~~~~g~i~~L~~ll~~--~~~~i~~~a~~~L~nl~~~-~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~ 223 (530)
++.+.+..+.+.|+++.|...+.- .+.+..+.++....|+.+- ++...+...+.....-+++++....++++.+.+.
T Consensus 166 ~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f 245 (604)
T KOG4500|consen 166 DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF 245 (604)
T ss_pred CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence 999999999999999999888754 5677778787777777642 2223445566777788888887777888999999
Q ss_pred HHhhhhccCCCCCChhhhhchHHHHHHhhcC-CC----h---hHHHHHHHHHHHhccCChHHHHHHHHhC-cHHHHHHhh
Q 009636 224 WTLSNFCRGKPQPPFDQVSPALPALAHLIHS-ND----D---EVLTDACWALSYLSDGTNDKIQAVIEAG-VFPRLAEFL 294 (530)
Q Consensus 224 ~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~-~d----~---~v~~~a~~~l~~l~~~~~~~~~~~~~~~-~l~~L~~lL 294 (530)
..+...+.++.-.-.....|.+..+..+++. .+ . .....++....-+..+++. .+.+...+ +++.+.+.+
T Consensus 246 eila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeS-Mq~L~~~p~~l~~~~sw~ 324 (604)
T KOG4500|consen 246 EILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDES-MQKLHADPQFLDFLESWF 324 (604)
T ss_pred HHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchH-HHHHhcCcHHHHHHHHHh
Confidence 9999999887555556667888888888875 21 1 1222334444444455544 45555555 899999999
Q ss_pred CCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCC----chhHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 009636 295 MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY----KKSIKKEACWTVSNITAGNREQIQAVIEAN 370 (530)
Q Consensus 295 ~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~----~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~ 370 (530)
.+++......+..++||+++.++. .-.+++.+++..|+.++.... +-+++..++.+|.|++-.- .....++..|
T Consensus 325 ~S~d~~l~t~g~LaigNfaR~D~~-ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv-~nka~~~~aG 402 (604)
T KOG4500|consen 325 RSDDSNLITMGSLAIGNFARRDDI-CIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPV-SNKAHFAPAG 402 (604)
T ss_pred cCCchhHHHHHHHHHHhhhccchH-HHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccC-Cchhhccccc
Confidence 999999999999999999995554 457889999999999996521 4567888999999998742 3455678899
Q ss_pred cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHH-cCChHHHHhccCCCChH-HHHHHHHHHHHHHHhhhhhh
Q 009636 371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVI-QGCIKPLCDLLVCPDPR-IVTVCLEGLENILKVGEAEK 448 (530)
Q Consensus 371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~-~~~i~~L~~lL~~~~~~-~~~~al~~l~~ll~~~~~~~ 448 (530)
+.+.++..++...|.+...-+.++.-+..+. +.....+.. ...++.|++.-+++|.. +.-.....+.-+++......
T Consensus 403 vteaIL~~lk~~~ppv~fkllgTlrM~~d~q-e~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kd 481 (604)
T KOG4500|consen 403 VTEAILLQLKLASPPVTFKLLGTLRMIRDSQ-EYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKD 481 (604)
T ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHHHhch-HHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhh
Confidence 9999999999999999988888887776642 112223332 24577788877777765 55555666666665542211
Q ss_pred hcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHH
Q 009636 449 NLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVK 488 (530)
Q Consensus 449 ~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~ 488 (530)
+...+...||++....+....+-.++..|.-
T Consensus 482 ---------v~~tvpksg~ik~~Vsm~t~~hi~mqnEalV 512 (604)
T KOG4500|consen 482 ---------VILTVPKSGGIKEKVSMFTKNHINMQNEALV 512 (604)
T ss_pred ---------hHhhccccccHHHHHHHHHHhhHHHhHHHHH
Confidence 3555677888888888877777777666543
No 23
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.65 E-value=1.7e-13 Score=123.08 Aligned_cols=310 Identities=12% Similarity=0.129 Sum_probs=247.3
Q ss_pred cCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCChhhHHHHHhCCCh
Q 009636 83 WSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTKVVIDHGAV 161 (530)
Q Consensus 83 ~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~-~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i 161 (530)
.+++..+.++++.+|..+.... | .+.+...+..++.+|.... +.++....+.++..-|..+..+++.+++.+++
T Consensus 117 ~~~~~~~l~ksL~al~~lt~~q--p---dl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il 191 (461)
T KOG4199|consen 117 ESPNESVLKKSLEAINSLTHKQ--P---DLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKIL 191 (461)
T ss_pred hCCchhHHHHHHHHHHHhhcCC--c---chhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHH
Confidence 3566677777888877765442 2 2345567888888886432 46888888899999998899999999999999
Q ss_pred HHHHHhhCC-CCHHHHHHHHHHHHhhhCCCc---------hhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009636 162 PIFVKLLYS-PSDDVREQAVWALGNIAGDSP---------RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (530)
Q Consensus 162 ~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~---------~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~ 231 (530)
+.+.+.|.. ....+.....|++.-+..+++ .....+...|++..|+..+....++.+...++.+|..|+-
T Consensus 192 ~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAV 271 (461)
T KOG4199|consen 192 ELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAV 271 (461)
T ss_pred HHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHH
Confidence 999987765 334577778999999987654 2345677788899999999777789999999999999998
Q ss_pred CCCCCChhhhhchHHHHHHhhcCC-Chh---HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC--CCchhHHHH
Q 009636 232 GKPQPPFDQVSPALPALAHLIHSN-DDE---VLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH--PSPSVLIPA 305 (530)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~ll~~~-d~~---v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~~~~~a 305 (530)
.+.........|.+..|+.++.+. +.. ....++..|..++.. ++....+++.|+.+.++.++.. ++|.+...+
T Consensus 272 r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~-DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~ 350 (461)
T KOG4199|consen 272 RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGS-DSVKSTIVEKGGLDKIITLALRHSDDPLVIQEV 350 (461)
T ss_pred HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCC-CchHHHHHHhcChHHHHHHHHHcCCChHHHHHH
Confidence 776666677789999999999874 333 445677777777754 4566778999999999998743 678899999
Q ss_pred HHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCch
Q 009636 306 LRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-YKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEF 384 (530)
Q Consensus 306 l~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~ 384 (530)
+.+++-++-..++....+++.|+-...+..|+.. ....++++|||.+.|++..+.++...++.. .++.|+......++
T Consensus 351 ~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~-GiE~Li~~A~~~h~ 429 (461)
T KOG4199|consen 351 MAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLAN-GIEKLIRTAKANHE 429 (461)
T ss_pred HHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhc-cHHHHHHHHHhcCc
Confidence 9999999999999999999999999999988754 356899999999999999888888777764 57778888888888
Q ss_pred hHHHHHHHHHHHhhc
Q 009636 385 DIKKEAAWAISNATS 399 (530)
Q Consensus 385 ~v~~~a~~aL~nl~~ 399 (530)
.....|..+|..+-.
T Consensus 430 tce~~akaALRDLGc 444 (461)
T KOG4199|consen 430 TCEAAAKAALRDLGC 444 (461)
T ss_pred cHHHHHHHHHHhcCc
Confidence 888888888888865
No 24
>PRK09687 putative lyase; Provisional
Probab=99.63 E-value=6e-14 Score=130.54 Aligned_cols=255 Identities=14% Similarity=0.133 Sum_probs=200.9
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhh
Q 009636 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL 196 (530)
Q Consensus 117 ~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~ 196 (530)
-++.|..+|.+.+ ..++..|+++|..+.. ..+++.+..++.++++.+|..++|+|+.|-.... .
T Consensus 24 ~~~~L~~~L~d~d-~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~-~--- 87 (280)
T PRK09687 24 NDDELFRLLDDHN-SLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKR-C--- 87 (280)
T ss_pred cHHHHHHHHhCCC-HHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc-c---
Confidence 4778999999888 8999999999988764 2345778888889999999999999999853221 1
Q ss_pred HhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChH
Q 009636 197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTND 276 (530)
Q Consensus 197 i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~ 276 (530)
....++.|..++..+++..++..++.+|.+++...... ...+++.+...+.++++.|+..++++|+.+.. +
T Consensus 88 --~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--~- 158 (280)
T PRK09687 88 --QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND--E- 158 (280)
T ss_pred --hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--H-
Confidence 11256677777558889999999999999997654222 23356667777888899999999999987642 1
Q ss_pred HHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 009636 277 KIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT 356 (530)
Q Consensus 277 ~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~ 356 (530)
..++.|+.+|.++++.++..|+.+||.+...++ .+++.|+..|.+. +..||..|+++|+.+-
T Consensus 159 --------~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~-~~~VR~~A~~aLg~~~ 220 (280)
T PRK09687 159 --------AAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDK-NEEIRIEAIIGLALRK 220 (280)
T ss_pred --------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCC-ChHHHHHHHHHHHccC
Confidence 356889999999999999999999999943232 3567899999988 9999999999999873
Q ss_pred cCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccC-CCChHHHHHHHH
Q 009636 357 AGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV-CPDPRIVTVCLE 435 (530)
Q Consensus 357 ~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~-~~~~~~~~~al~ 435 (530)
. + .+++.|++.+.+++ ++..++.+|+++-.. ..++.|..+++ .+|+.++..+.+
T Consensus 221 ~--~---------~av~~Li~~L~~~~--~~~~a~~ALg~ig~~------------~a~p~L~~l~~~~~d~~v~~~a~~ 275 (280)
T PRK09687 221 D--K---------RVLSVLIKELKKGT--VGDLIIEAAGELGDK------------TLLPVLDTLLYKFDDNEIITKAID 275 (280)
T ss_pred C--h---------hHHHHHHHHHcCCc--hHHHHHHHHHhcCCH------------hHHHHHHHHHhhCCChhHHHHHHH
Confidence 2 2 37899999998765 778899999988652 25888888886 789999999988
Q ss_pred HHHH
Q 009636 436 GLEN 439 (530)
Q Consensus 436 ~l~~ 439 (530)
++..
T Consensus 276 a~~~ 279 (280)
T PRK09687 276 KLKR 279 (280)
T ss_pred HHhc
Confidence 8753
No 25
>PRK09687 putative lyase; Provisional
Probab=99.62 E-value=1.6e-13 Score=127.72 Aligned_cols=254 Identities=15% Similarity=0.099 Sum_probs=198.9
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009636 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 153 (530)
.++.|+..|.+++..++..|+..|..+-. ..+++.+..++.+++ +.+|..|+++|+.+......
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~------------~~~~~~l~~ll~~~d-~~vR~~A~~aLg~lg~~~~~--- 87 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGG------------QDVFRLAIELCSSKN-PIERDIGADILSQLGMAKRC--- 87 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCc------------chHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCccc---
Confidence 56888999999999999999999987632 235777888888888 99999999999998752211
Q ss_pred HHHhCCChHHHHHh-hCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009636 154 VVIDHGAVPIFVKL-LYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (530)
Q Consensus 154 ~~~~~g~i~~L~~l-l~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~ 232 (530)
...+++.|..+ +.++++.++..++.+|++++...... ...++..+...+ .+.+..++..++++|..+..
T Consensus 88 ---~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~-~D~~~~VR~~a~~aLg~~~~- 157 (280)
T PRK09687 88 ---QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITA-FDKSTNVRFAVAFALSVIND- 157 (280)
T ss_pred ---hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHh-hCCCHHHHHHHHHHHhccCC-
Confidence 11346777776 56788999999999999996443211 111344555666 67789999999999976532
Q ss_pred CCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHh
Q 009636 233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312 (530)
Q Consensus 233 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl 312 (530)
...++.|+.++.++++.|+..++.+|+.+....+ .+++.|+..|.+.++.++..|++.|+.+
T Consensus 158 ---------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 158 ---------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred ---------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 3478999999999999999999999999843333 3457788899999999999999999986
Q ss_pred hcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHh-cCchhHHHHHH
Q 009636 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLE-NAEFDIKKEAA 391 (530)
Q Consensus 313 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~ 391 (530)
-. ..+++.|+..|.++ + ++..++.+|+++.. + ..+|.|..++. .+|..++..|.
T Consensus 220 ~~-----------~~av~~Li~~L~~~-~--~~~~a~~ALg~ig~--~---------~a~p~L~~l~~~~~d~~v~~~a~ 274 (280)
T PRK09687 220 KD-----------KRVLSVLIKELKKG-T--VGDLIIEAAGELGD--K---------TLLPVLDTLLYKFDDNEIITKAI 274 (280)
T ss_pred CC-----------hhHHHHHHHHHcCC-c--hHHHHHHHHHhcCC--H---------hHHHHHHHHHhhCCChhHHHHHH
Confidence 43 24689999999976 4 78889999999843 2 36889999996 67999999999
Q ss_pred HHHHH
Q 009636 392 WAISN 396 (530)
Q Consensus 392 ~aL~n 396 (530)
++|..
T Consensus 275 ~a~~~ 279 (280)
T PRK09687 275 DKLKR 279 (280)
T ss_pred HHHhc
Confidence 98853
No 26
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.61 E-value=1.2e-12 Score=127.82 Aligned_cols=405 Identities=16% Similarity=0.085 Sum_probs=274.0
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCChhhHHHH
Q 009636 77 VMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTKVV 155 (530)
Q Consensus 77 ~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~-~~~i~~~a~~~L~~l~~~~~~~~~~~ 155 (530)
.++..+.+.+|+....|..-..+++.+. .++...+++.|.++.++.+++..+ .++.+.+.+.++.....+.......+
T Consensus 13 ~~l~~L~~~dpe~lvrai~~~kN~vig~-~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~sv 91 (678)
T KOG1293|consen 13 DLLYRLLHLDPEQLVRAIYMSKNLVIGF-TDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSV 91 (678)
T ss_pred HHHHhhhcCCHHHHHHHHHHhcchhhcC-CCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHH
Confidence 4455666778888888999999998876 555557899999999999998765 46777778888888888888889999
Q ss_pred HhCCChHHHHHhhCCCC-HHHHHHHHHHHHhhhCCCchhhhhHh---hcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009636 156 IDHGAVPIFVKLLYSPS-DDVREQAVWALGNIAGDSPRCRDLVL---SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (530)
Q Consensus 156 ~~~g~i~~L~~ll~~~~-~~i~~~a~~~L~nl~~~~~~~~~~i~---~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~ 231 (530)
.+.+.++.|++++++++ ..+++.++.++.++...++. .+... ...+++.+..++ ..........-+...+++|.
T Consensus 92 L~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~-q~~~~s~~~~sIi~~~s~l~-s~~lk~~~~l~~~~~a~~s~ 169 (678)
T KOG1293|consen 92 LRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKY-QDKKMSLHLKSIIVKFSLLY-SIELKYISRLDVSRAAHLSS 169 (678)
T ss_pred HHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccc-cccchhhhHHHHHHHHHHHH-hhhhhhhhhhhhhhhccccc
Confidence 99999999999999988 78999999999999876652 22222 122344444444 32445555566666667776
Q ss_pred CCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHH---HhccCChHHH----HHHHHhCcHH--HHHHhhCCCCchhH
Q 009636 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALS---YLSDGTNDKI----QAVIEAGVFP--RLAEFLMHPSPSVL 302 (530)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~---~l~~~~~~~~----~~~~~~~~l~--~L~~lL~~~~~~~~ 302 (530)
...........++...+.-++.......+..++.+++ .+..+++... ....+.|+.+ .+..++++++...+
T Consensus 170 ~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~ 249 (678)
T KOG1293|consen 170 TKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSER 249 (678)
T ss_pred cchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHH
Confidence 6555555566777777777777777888899999998 6665554332 2334446655 34555566555555
Q ss_pred HHHHHHHhHhhcCCc-------------hhhHHH--------------------------------------hhcCchHH
Q 009636 303 IPALRTVGNIVTGDD-------------MQTQCV--------------------------------------IEYQALPC 331 (530)
Q Consensus 303 ~~al~~L~nl~~~~~-------------~~~~~~--------------------------------------~~~~~l~~ 331 (530)
..++.++-++..++. .....+ .+...++.
T Consensus 250 l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~ 329 (678)
T KOG1293|consen 250 LRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKT 329 (678)
T ss_pred HHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhh
Confidence 555555555544330 000000 00001111
Q ss_pred HHHhh----------------------------------------------------cCCCchhHHHHHHHHHHHHhcCC
Q 009636 332 LLNLL----------------------------------------------------SGNYKKSIKKEACWTVSNITAGN 359 (530)
Q Consensus 332 L~~lL----------------------------------------------------~~~~~~~v~~~a~~~L~nl~~~~ 359 (530)
+.+++ ... +..++..||.++-+++..-
T Consensus 330 ~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~k-d~~~~aaa~l~~~s~srsV 408 (678)
T KOG1293|consen 330 TTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIK-DHDFVAAALLCLKSFSRSV 408 (678)
T ss_pred HHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccc-cHHHHHHHHHHHHHHHHHH
Confidence 11111 011 3334444444444443321
Q ss_pred HHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHH
Q 009636 360 REQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLEN 439 (530)
Q Consensus 360 ~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ 439 (530)
..-...+-...++.+|++++..++..|+..++.+|+|+...-+ .....++..|+++.+..++...++.++..++|+|++
T Consensus 409 ~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs-~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~ 487 (678)
T KOG1293|consen 409 SALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFS-NLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRH 487 (678)
T ss_pred HHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcc-cHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 1111112245688999999999999999999999999998644 456778999999999999999999999999999999
Q ss_pred HHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 009636 440 ILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLD 496 (530)
Q Consensus 440 ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~~ 496 (530)
++-.+.... ...+-.-=+...|..+.++++..|++.+.+++.++..+
T Consensus 488 l~f~~de~~----------k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 488 LMFNCDEEE----------KFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred HHhcchHHH----------HHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 986554322 12222122356788899999999999999999988654
No 27
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=1.7e-13 Score=133.30 Aligned_cols=340 Identities=17% Similarity=0.182 Sum_probs=220.6
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHH-HH---HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC
Q 009636 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEE-VI---RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT 148 (530)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~-~~---~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~ 148 (530)
+.+|.|.++|.+++...+.-|..+|.++...+ ....+. +. -.-.+|.++++.++++ |.+|..|+.|+..+.-..
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDs-a~~lds~~~~rpl~~mipkfl~f~~h~s-pkiRs~A~~cvNq~i~~~ 205 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDS-AQFLDSDVLTRPLNIMIPKFLQFFKHPS-PKIRSHAVGCVNQFIIIQ 205 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhh-HHHHhhhcccCchHHhHHHHHHHHhCCC-hhHHHHHHhhhhheeecC
Confidence 46788889999999888888999999887442 111110 00 0236899999999998 999999999998877644
Q ss_pred hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhh
Q 009636 149 SEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228 (530)
Q Consensus 149 ~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~ 228 (530)
++....-++ .++..+..+-.+.++++|.+.+.+|..|....+.- -.---.++++.++... ++.|+++.-.||.++..
T Consensus 206 ~qal~~~iD-~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dk-l~phl~~IveyML~~t-qd~dE~VALEACEFwla 282 (885)
T KOG2023|consen 206 TQALYVHID-KFLEILFALANDEDPEVRKNVCRALVFLLEVRPDK-LVPHLDNIVEYMLQRT-QDVDENVALEACEFWLA 282 (885)
T ss_pred cHHHHHHHH-HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHh-cccchHHHHHHHHHHc-cCcchhHHHHHHHHHHH
Confidence 433322222 35666777777789999999999999998655421 0101124566666666 77788899999999999
Q ss_pred hccCCCCCC--hhhhhchHHHHHHhhcCCChhH--HH-------------------------------------------
Q 009636 229 FCRGKPQPP--FDQVSPALPALAHLIHSNDDEV--LT------------------------------------------- 261 (530)
Q Consensus 229 L~~~~~~~~--~~~~~~~l~~L~~ll~~~d~~v--~~------------------------------------------- 261 (530)
++...-... ......++|.|+.-+.-++.++ ..
T Consensus 283 ~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DD 362 (885)
T KOG2023|consen 283 LAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDD 362 (885)
T ss_pred HhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccc
Confidence 998862211 2334667777765433111100 00
Q ss_pred ---HHHHHHHHhccCChHHHHHHHHhCcH----HHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHH
Q 009636 262 ---DACWALSYLSDGTNDKIQAVIEAGVF----PRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLN 334 (530)
Q Consensus 262 ---~a~~~l~~l~~~~~~~~~~~~~~~~l----~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~ 334 (530)
..-|-|...+...-+....+....++ |.|-+.|.+++|.+++.++.++|.++.|+-...-.- -..++|.|+.
T Consensus 363 dD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~-LpeLip~l~~ 441 (885)
T KOG2023|consen 363 DDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPH-LPELIPFLLS 441 (885)
T ss_pred ccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccc-hHHHHHHHHH
Confidence 00122222221111112223333444 445555677899999999999999998875432111 1247899999
Q ss_pred hhcCCCchhHHHHHHHHHHHHhcC--CHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHc
Q 009636 335 LLSGNYKKSIKKEACWTVSNITAG--NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQ 412 (530)
Q Consensus 335 lL~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~ 412 (530)
+|.+. .+-||.-+||+|+..+.. ..+ .+..+. .++..|++.+-+++.+||+.|+.++..+-..+..+.+.++-
T Consensus 442 ~L~DK-kplVRsITCWTLsRys~wv~~~~-~~~~f~-pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~-- 516 (885)
T KOG2023|consen 442 LLDDK-KPLVRSITCWTLSRYSKWVVQDS-RDEYFK-PVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLE-- 516 (885)
T ss_pred HhccC-ccceeeeeeeeHhhhhhhHhcCC-hHhhhH-HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHH--
Confidence 99998 999999999999999762 111 212221 35666666677788999999999999998877766666542
Q ss_pred CChHHHHhccC
Q 009636 413 GCIKPLCDLLV 423 (530)
Q Consensus 413 ~~i~~L~~lL~ 423 (530)
.++..|+..+.
T Consensus 517 ~IL~~l~~af~ 527 (885)
T KOG2023|consen 517 YILDQLVFAFG 527 (885)
T ss_pred HHHHHHHHHHH
Confidence 23444444443
No 28
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.60 E-value=3.5e-13 Score=122.39 Aligned_cols=237 Identities=19% Similarity=0.224 Sum_probs=185.8
Q ss_pred hhchHHHHHHhhcC-CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchh
Q 009636 241 VSPALPALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ 319 (530)
Q Consensus 241 ~~~~l~~L~~ll~~-~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~ 319 (530)
..+-++.|+.+|+. .|+.+++.++.++++.+..+ .....+.+.|+++.+..+|.++++.++..|++++.|++...+.+
T Consensus 10 ~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~-~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~ 88 (254)
T PF04826_consen 10 EAQELQKLLCLLESTEDPFIQEKALIALGNSAAFP-FNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ 88 (254)
T ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCh-hHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence 35667889999985 58999999999999987655 45677888999999999999999999999999999998765544
Q ss_pred hHHHhhcCchHHHHHhh-cCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhh
Q 009636 320 TQCVIEYQALPCLLNLL-SGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNAT 398 (530)
Q Consensus 320 ~~~~~~~~~l~~L~~lL-~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~ 398 (530)
. .++. .++.+.+.. ..+.+..++..+..+|.|++..+.. +.++ .+.++.++.++..++..+|..++++|.|++
T Consensus 89 ~--~Ik~-~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~--~~~l-~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 89 E--QIKM-YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY--HHML-ANYIPDLLSLLSSGSEKTKVQVLKVLVNLS 162 (254)
T ss_pred H--HHHH-HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch--hhhH-HhhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 3 2333 355555543 4333678999999999999865322 2333 347999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHcCChHHHHhccCCC-ChHHHHHHHHHHHHHHHhhhhhhhc---CCCCchhhHHHhhhhc-cHHHHHH
Q 009636 399 SGGTHEQIKFLVIQGCIKPLCDLLVCP-DPRIVTVCLEGLENILKVGEAEKNL---GNTDVNVFTQMIDDAE-GLEKIES 473 (530)
Q Consensus 399 ~~~~~~~~~~l~~~~~i~~L~~lL~~~-~~~~~~~al~~l~~ll~~~~~~~~~---~~~~~~~~~~~l~~~~-~~~~l~~ 473 (530)
. ++...+.++..+++..++.+++.. +.++...++..+.++.....+.... ..-...++...|.+.+ ..++|..
T Consensus 163 ~--np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~ 240 (254)
T PF04826_consen 163 E--NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQA 240 (254)
T ss_pred c--CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHH
Confidence 9 678899999999999999999875 5678888999999996544332111 1113445567787777 7788999
Q ss_pred HhcCCCHHHHHHH
Q 009636 474 LQTHDNAEIYEKS 486 (530)
Q Consensus 474 l~~~~~~~v~~~a 486 (530)
|..|++++|+.+.
T Consensus 241 l~~h~d~ev~~~v 253 (254)
T PF04826_consen 241 LANHPDPEVKEQV 253 (254)
T ss_pred HHcCCCHHHhhhc
Confidence 9999999999864
No 29
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.60 E-value=7.2e-14 Score=145.76 Aligned_cols=268 Identities=19% Similarity=0.153 Sum_probs=222.5
Q ss_pred HHH-HHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-----------CHHHHHHHHHHHHHHhcCChhhHHHHH
Q 009636 89 VQY-ECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-----------YPQLQFEAAWALTNIASGTSEHTKVVI 156 (530)
Q Consensus 89 ~~~-~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~-----------~~~i~~~a~~~L~~l~~~~~~~~~~~~ 156 (530)
-++ .|+..|.++.-+ .+.+..|.+.|++..+-+++.-.. +-.++..|..+|+||+.++..++..+.
T Consensus 313 H~lcaA~~~lMK~SFD--EEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LC 390 (2195)
T KOG2122|consen 313 HQLCAALCTLMKLSFD--EEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLC 390 (2195)
T ss_pred hhhHHHHHHHHHhhcc--HHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 344 677777776433 688889999999998888775321 346899999999999999888888877
Q ss_pred h-CCChHHHHHhhCCCCHHHHHHHHHHHHhhhCC-CchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC-
Q 009636 157 D-HGAVPIFVKLLYSPSDDVREQAVWALGNIAGD-SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK- 233 (530)
Q Consensus 157 ~-~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~-~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~- 233 (530)
. .|++..++..|.+...++....+.+|.||+-. +...+..+-+.|-+..|.........+..++.++.+||||+.+.
T Consensus 391 s~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHct 470 (2195)
T KOG2122|consen 391 SQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCT 470 (2195)
T ss_pred hhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhccc
Confidence 5 59999999999998889999999999999943 23356677788889999888767778888999999999999887
Q ss_pred -CCCChhhhhchHHHHHHhhcCC----ChhHHHHHHHHHHHhc---cCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHH
Q 009636 234 -PQPPFDQVSPALPALAHLIHSN----DDEVLTDACWALSYLS---DGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPA 305 (530)
Q Consensus 234 -~~~~~~~~~~~l~~L~~ll~~~----d~~v~~~a~~~l~~l~---~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a 305 (530)
....+-.+.|++..|+.+|.-. .-.|++.+-.+|.|++ ...++..+.+.++..+..|++.|++.+..+..++
T Consensus 471 eNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNa 550 (2195)
T KOG2122|consen 471 ENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNA 550 (2195)
T ss_pred ccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecc
Confidence 3344556799999999998643 3557777777777665 3456677889999999999999999999999999
Q ss_pred HHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCC
Q 009636 306 LRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN 359 (530)
Q Consensus 306 l~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~ 359 (530)
|.+|+||+..+++..+.+.+.|.++.|..++.+. +..+-.-++.+|.|+....
T Consensus 551 CGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSK-hkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 551 CGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSK-HKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhh-hhhhhhhHHHHHHHHhcCC
Confidence 9999999999999999999999999999999998 8889999999999998754
No 30
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.56 E-value=3.6e-12 Score=138.75 Aligned_cols=275 Identities=18% Similarity=0.205 Sum_probs=218.3
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009636 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (530)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (530)
..++.|+..|.++++.++..|+..|.++.. .++++.|+..|.+++ +.++..|+.+|..+....+
T Consensus 621 ~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~------------~~~~~~L~~aL~D~d-~~VR~~Aa~aL~~l~~~~~--- 684 (897)
T PRK13800 621 PSVAELAPYLADPDPGVRRTAVAVLTETTP------------PGFGPALVAALGDGA-AAVRRAAAEGLRELVEVLP--- 684 (897)
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHhhhcc------------hhHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhccC---
Confidence 356888999999999999999999997642 236889999998887 9999999999988854111
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009636 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (530)
Q Consensus 153 ~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~ 232 (530)
..+.|...|.++++.++..++.+|+.+.... ...++..+ .+.+..++..++++|..+-.
T Consensus 685 -------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~------------~~~l~~~L-~D~d~~VR~~Av~aL~~~~~- 743 (897)
T PRK13800 685 -------PAPALRDHLGSPDPVVRAAALDVLRALRAGD------------AALFAAAL-GDPDHRVRIEAVRALVSVDD- 743 (897)
T ss_pred -------chHHHHHHhcCCCHHHHHHHHHHHHhhccCC------------HHHHHHHh-cCCCHHHHHHHHHHHhcccC-
Confidence 2356778888899999999999999874221 23466777 78899999999999987621
Q ss_pred CCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHh
Q 009636 233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312 (530)
Q Consensus 233 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl 312 (530)
.+.|..++.++++.|+..++.+|+.+..... ..++.|..++.++++.++..|+.+|+.+
T Consensus 744 ------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d~~VR~aA~~aLg~~ 802 (897)
T PRK13800 744 ------------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPDPLVRAAALAALAEL 802 (897)
T ss_pred ------------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 1346778889999999999999998865422 2367788999999999999999999998
Q ss_pred hcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHH
Q 009636 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAW 392 (530)
Q Consensus 313 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~ 392 (530)
.... .+.+.+...|.++ ++.||..|+++|+.+... ..++.|+.+|.+++..||..|++
T Consensus 803 g~~~----------~~~~~l~~aL~d~-d~~VR~~Aa~aL~~l~~~-----------~a~~~L~~~L~D~~~~VR~~A~~ 860 (897)
T PRK13800 803 GCPP----------DDVAAATAALRAS-AWQVRQGAARALAGAAAD-----------VAVPALVEALTDPHLDVRKAAVL 860 (897)
T ss_pred CCcc----------hhHHHHHHHhcCC-ChHHHHHHHHHHHhcccc-----------chHHHHHHHhcCCCHHHHHHHHH
Confidence 5421 1235577888888 899999999999987432 25689999999999999999999
Q ss_pred HHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHH
Q 009636 393 AISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLE 438 (530)
Q Consensus 393 aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~ 438 (530)
+|..+. +++. ..+.|...+++.|+.|+..+..+|.
T Consensus 861 aL~~~~--~~~~---------a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 861 ALTRWP--GDPA---------ARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HHhccC--CCHH---------HHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 999972 2333 3667778899999999999998875
No 31
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=9e-12 Score=129.43 Aligned_cols=396 Identities=16% Similarity=0.158 Sum_probs=271.2
Q ss_pred CHHHHHHhhc-CCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009636 74 NLPVMVAGVW-SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (530)
Q Consensus 74 ~l~~l~~~l~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (530)
.++.|...+. +.+++++..|+-.+|+++... -+.+..=.+..+-..|+..+.+...+.++...+.++..++...-..
T Consensus 37 ~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~-w~~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e- 114 (1075)
T KOG2171|consen 37 LLPALAHILATSADPQVRQLAAVLLRKLLTKH-WSRLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE- 114 (1075)
T ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-hhcCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-
Confidence 5567777666 588999999999999998762 2222233334455566776666655899999999999999844222
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCch-hhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009636 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR-CRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (530)
Q Consensus 153 ~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~-~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~ 231 (530)
+ =.++++.|.+..+++++..|+.|+.+|..+...-.. .+..+.. +.+.+.+.+ .+++..++..++.++..++.
T Consensus 115 ~---WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~--l~~lf~q~~-~d~s~~vr~~a~rA~~a~~~ 188 (1075)
T KOG2171|consen 115 K---WPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDD--LLRLFSQTM-TDPSSPVRVAAVRALGAFAE 188 (1075)
T ss_pred c---hHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHH--HHHHHHHhc-cCCcchHHHHHHHHHHHHHH
Confidence 0 025678888999999999999999999998754332 1111111 233344445 44444499999999998887
Q ss_pred CCC--CCChhhhhchHHHHHH----hhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC--CchhHH
Q 009636 232 GKP--QPPFDQVSPALPALAH----LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP--SPSVLI 303 (530)
Q Consensus 232 ~~~--~~~~~~~~~~l~~L~~----ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~~~~ 303 (530)
..+ ..........+|.++. .+..+|.+....++.++..++...+......+. .++...+.+..+. ++.+|.
T Consensus 189 ~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~R~ 267 (1075)
T KOG2171|consen 189 YLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS-QIIQFSLEIAKNKELENSIRH 267 (1075)
T ss_pred HhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH-HHHHHHHHHhhcccccHHHHH
Confidence 764 2222334555665444 445667777788888888888776655544443 3455555555443 455666
Q ss_pred HHHHHHhHhhcCCchhh---------------------------------------------HHHh------------hc
Q 009636 304 PALRTVGNIVTGDDMQT---------------------------------------------QCVI------------EY 326 (530)
Q Consensus 304 ~al~~L~nl~~~~~~~~---------------------------------------------~~~~------------~~ 326 (530)
.|+.+|..++.+.+... ...+ -.
T Consensus 268 ~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p 347 (1075)
T KOG2171|consen 268 LALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLP 347 (1075)
T ss_pred HHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehH
Confidence 66666655543311000 0000 01
Q ss_pred CchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHH
Q 009636 327 QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQI 406 (530)
Q Consensus 327 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~ 406 (530)
-+++.+..++.+. +..-|+.+..+|+-++.|+.+.+...++ .+++.++..+.+++++||..|+.|++.++..-.++..
T Consensus 348 ~~~~~l~~~l~S~-~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iq 425 (1075)
T KOG2171|consen 348 PLFEALEAMLQST-EWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQ 425 (1075)
T ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHH
Confidence 2355666677788 8899999999999999999988877655 6899999999999999999999999999997665544
Q ss_pred HHHHHcCChHHHHhccCCC-ChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHH
Q 009636 407 KFLVIQGCIKPLCDLLVCP-DPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEK 485 (530)
Q Consensus 407 ~~l~~~~~i~~L~~lL~~~-~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~ 485 (530)
++ ....+++.|+..+++. ++.+...+..++.+++..+.+.. ..+|...+.+. ++..|..+..+.+++.
T Consensus 426 k~-~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~------l~pYLd~lm~~----~l~~L~~~~~~~v~e~ 494 (1075)
T KOG2171|consen 426 KK-HHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSI------LEPYLDGLMEK----KLLLLLQSSKPYVQEQ 494 (1075)
T ss_pred HH-HHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHH------HHHHHHHHHHH----HHHHHhcCCchhHHHH
Confidence 44 5567788888888764 66899999999999998876643 44566555422 6777888888888887
Q ss_pred HHHHHH
Q 009636 486 SVKLLE 491 (530)
Q Consensus 486 a~~il~ 491 (530)
+...|-
T Consensus 495 vvtaIa 500 (1075)
T KOG2171|consen 495 AVTAIA 500 (1075)
T ss_pred HHHHHH
Confidence 766654
No 32
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.52 E-value=2.4e-12 Score=116.96 Aligned_cols=196 Identities=18% Similarity=0.232 Sum_probs=163.2
Q ss_pred HHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCch
Q 009636 113 IRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR 192 (530)
Q Consensus 113 ~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~ 192 (530)
.+.+-++.|+.+|+...+|.++..|+.++++.+. .+..++.+.+.|+++.+..++..+++.+++.|+++|.|++.+.+
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e- 86 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE- 86 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh-
Confidence 4556689999999977669999999999999877 78899999999999999999999999999999999999987765
Q ss_pred hhhhHhhcCChHHHHHhhcC-CCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 009636 193 CRDLVLSQGGLVPLLAQLNG-QPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLS 271 (530)
Q Consensus 193 ~~~~i~~~~~i~~Ll~ll~~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~ 271 (530)
.+..+-. .++.+++.+.. .-+..++..++.+|.+|+..... .......+|.++.++.+++..++..++++|.+++
T Consensus 87 n~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~--~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 87 NQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY--HHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLS 162 (254)
T ss_pred hHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch--hhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 4444432 46666665533 34788999999999999876433 2234568999999999999999999999999999
Q ss_pred cCChHHHHHHHHhCcHHHHHHhhCCC-CchhHHHHHHHHhHhhcC
Q 009636 272 DGTNDKIQAVIEAGVFPRLAEFLMHP-SPSVLIPALRTVGNIVTG 315 (530)
Q Consensus 272 ~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~~~~al~~L~nl~~~ 315 (530)
.++. ....++..+++..++.++..+ +..+...++..+.||..+
T Consensus 163 ~np~-~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 163 ENPD-MTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred cCHH-HHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 8765 456688889999999999886 577899999999999653
No 33
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.49 E-value=1.7e-11 Score=119.90 Aligned_cols=370 Identities=14% Similarity=0.093 Sum_probs=241.5
Q ss_pred hcCCHHHHHHhhcCCCh--HHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC
Q 009636 71 KLENLPVMVAGVWSNDS--GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT 148 (530)
Q Consensus 71 ~~~~l~~l~~~l~s~~~--~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~ 148 (530)
+.++++.++..++.+++ +.+.+.+..+..+.+++ ......+.+.+.++.|.++|++++...+....++++..+...+
T Consensus 49 k~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~e-qd~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~ 127 (678)
T KOG1293|consen 49 KLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGE-QDKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETS 127 (678)
T ss_pred hhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhc-cchHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcc
Confidence 45789999999987654 45555666677777775 6778889999999999999998885688899999999999855
Q ss_pred hhhHHHHH--hCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHh
Q 009636 149 SEHTKVVI--DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTL 226 (530)
Q Consensus 149 ~~~~~~~~--~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L 226 (530)
+..-..+. ...+++.+..++..+.......-+....++++.. ..+......|+.+.+.-++ ...+...+..++.++
T Consensus 128 ~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~-~hq~Il~Na~i~ekI~~l~-~~~s~~~RlaaL~~~ 205 (678)
T KOG1293|consen 128 KYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTK-DHQLILCNAGILEKINILL-MYLSSKLRLAALLCL 205 (678)
T ss_pred cccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccc-hhhheeccccchhhHHHHH-HhhhHHHHHHHHHHh
Confidence 43333222 2345555555555233334444444444544433 4555666777666665555 555778888888888
Q ss_pred h---hhccCCCCCChhh-----hhchHH--HHHHhhcCCChhHHHHHHHHHHHhccCCh----------------HH---
Q 009636 227 S---NFCRGKPQPPFDQ-----VSPALP--ALAHLIHSNDDEVLTDACWALSYLSDGTN----------------DK--- 277 (530)
Q Consensus 227 ~---~L~~~~~~~~~~~-----~~~~l~--~L~~ll~~~d~~v~~~a~~~l~~l~~~~~----------------~~--- 277 (530)
+ ++..+++...... ..++.+ .+.+++.+.+..-+..++.++.++...+. +.
T Consensus 206 sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q 285 (678)
T KOG1293|consen 206 SRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQ 285 (678)
T ss_pred hccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHH
Confidence 8 6666554322211 133333 23334444444333334444433322210 00
Q ss_pred --------------------------------HHHHHHhCcHHHHHHhh-------------------------------
Q 009636 278 --------------------------------IQAVIEAGVFPRLAEFL------------------------------- 294 (530)
Q Consensus 278 --------------------------------~~~~~~~~~l~~L~~lL------------------------------- 294 (530)
.....+...++.+.+++
T Consensus 286 ~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~ 365 (678)
T KOG1293|consen 286 YNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGL 365 (678)
T ss_pred HhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhc
Confidence 00000011111111111
Q ss_pred ---------------------CCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHH
Q 009636 295 ---------------------MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS 353 (530)
Q Consensus 295 ---------------------~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~ 353 (530)
-..+...+..||.++-+++..-......+-...+..+|++++..+ +..|+..+..+|+
T Consensus 366 ~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp-~~~i~~~~lgai~ 444 (678)
T KOG1293|consen 366 EISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDP-EIMIMGITLGAIC 444 (678)
T ss_pred chhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCc-chhHHHHHHHHHH
Confidence 112334555666666665543322222223456888999999888 8899999999999
Q ss_pred HHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHH
Q 009636 354 NITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVC 433 (530)
Q Consensus 354 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~a 433 (530)
|+.-........++..|+|+.+..++.+.++.++..+.|+|.++..+++.+....+...-....+..+.+++++.|++.+
T Consensus 445 NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~ 524 (678)
T KOG1293|consen 445 NLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQC 524 (678)
T ss_pred HHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHH
Confidence 99986667778899999999999999999999999999999999998776666666665566778888899999999999
Q ss_pred HHHHHHHHHhh
Q 009636 434 LEGLENILKVG 444 (530)
Q Consensus 434 l~~l~~ll~~~ 444 (530)
+..+.|+....
T Consensus 525 fqllRNl~c~~ 535 (678)
T KOG1293|consen 525 FQLLRNLTCNS 535 (678)
T ss_pred HHHHHHhhcCc
Confidence 99999997653
No 34
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.48 E-value=2.5e-11 Score=132.17 Aligned_cols=277 Identities=18% Similarity=0.225 Sum_probs=218.7
Q ss_pred HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchh
Q 009636 114 RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC 193 (530)
Q Consensus 114 ~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~ 193 (530)
....++.|+..|.+++ +.+|..|+..|+.+.. .++++.|...|.++++.++..|+.+|+.+....+
T Consensus 619 ~~~~~~~L~~~L~D~d-~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~-- 684 (897)
T PRK13800 619 DAPSVAELAPYLADPD-PGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP-- 684 (897)
T ss_pred cchhHHHHHHHhcCCC-HHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC--
Confidence 3456789999999988 9999999999998753 2457889999999999999999999998853222
Q ss_pred hhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC
Q 009636 194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG 273 (530)
Q Consensus 194 ~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~ 273 (530)
..+.+...| .+.++.++..++.+|..+.... ...++..+.++|+.++..++++|..+..
T Consensus 685 --------~~~~L~~~L-~~~d~~VR~~A~~aL~~~~~~~-----------~~~l~~~L~D~d~~VR~~Av~aL~~~~~- 743 (897)
T PRK13800 685 --------PAPALRDHL-GSPDPVVRAAALDVLRALRAGD-----------AALFAAALGDPDHRVRIEAVRALVSVDD- 743 (897)
T ss_pred --------chHHHHHHh-cCCCHHHHHHHHHHHHhhccCC-----------HHHHHHHhcCCCHHHHHHHHHHHhcccC-
Confidence 124566777 6789999999999998865321 2356778899999999999999987621
Q ss_pred ChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHH
Q 009636 274 TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS 353 (530)
Q Consensus 274 ~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~ 353 (530)
.+.|..++.++++.++..++.+|+.+..... ..++.|..++.++ ++.+|..|+.+|+
T Consensus 744 -------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~-d~~VR~aA~~aLg 800 (897)
T PRK13800 744 -------------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDP-DPLVRAAALAALA 800 (897)
T ss_pred -------------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 1346678999999999999999998865322 2367888999988 8999999999999
Q ss_pred HHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHH
Q 009636 354 NITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVC 433 (530)
Q Consensus 354 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~a 433 (530)
++.... .+++.++..+.++++.||..|+++|..+-.. ..++.|..+|+++++.|+..+
T Consensus 801 ~~g~~~----------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~------------~a~~~L~~~L~D~~~~VR~~A 858 (897)
T PRK13800 801 ELGCPP----------DDVAAATAALRASAWQVRQGAARALAGAAAD------------VAVPALVEALTDPHLDVRKAA 858 (897)
T ss_pred hcCCcc----------hhHHHHHHHhcCCChHHHHHHHHHHHhcccc------------chHHHHHHHhcCCCHHHHHHH
Confidence 985431 1335678889999999999999999887431 256889999999999999999
Q ss_pred HHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHH
Q 009636 434 LEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLE 491 (530)
Q Consensus 434 l~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~ 491 (530)
+.+|..+ . ++ ......|....++++.+|+..|...|+
T Consensus 859 ~~aL~~~-~-~~-------------------~~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 859 VLALTRW-P-GD-------------------PAARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HHHHhcc-C-CC-------------------HHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 9999885 1 11 112467778888999999999988876
No 35
>PTZ00429 beta-adaptin; Provisional
Probab=99.48 E-value=4e-10 Score=117.54 Aligned_cols=261 Identities=14% Similarity=0.092 Sum_probs=187.4
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009636 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (530)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (530)
..++.+++.+.+++.+++....-.+.+.+.. .+..-.+ ++..|.+=+.+++ |.+|..|+++++++-. ++..
T Consensus 68 ~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~--~pelalL----aINtl~KDl~d~N-p~IRaLALRtLs~Ir~--~~i~ 138 (746)
T PTZ00429 68 YLFVDVVKLAPSTDLELKKLVYLYVLSTARL--QPEKALL----AVNTFLQDTTNSS-PVVRALAVRTMMCIRV--SSVL 138 (746)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHccc--ChHHHHH----HHHHHHHHcCCCC-HHHHHHHHHHHHcCCc--HHHH
Confidence 3678889999999999999888888888654 2322222 3677888888887 9999999999998876 4444
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009636 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (530)
Q Consensus 153 ~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~ 232 (530)
..+ ++.+.+.+.+.++-+|..|+.++.++....++ .+...+.++.|.+++ .+.++.+..+|+.+|..++..
T Consensus 139 e~l-----~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL-~D~dp~Vv~nAl~aL~eI~~~ 209 (746)
T PTZ00429 139 EYT-----LEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELL-NDNNPVVASNAAAIVCEVNDY 209 (746)
T ss_pred HHH-----HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHh-cCCCccHHHHHHHHHHHHHHh
Confidence 333 56788888899999999999999999766653 345567888899988 889999999999999999876
Q ss_pred CCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHh
Q 009636 233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312 (530)
Q Consensus 233 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl 312 (530)
.+. ......+.+..|+..+...++..+..++.+|....-.++... ..++..+...|++.++.+...|++++.++
T Consensus 210 ~~~-~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l 283 (746)
T PTZ00429 210 GSE-KIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANL 283 (746)
T ss_pred Cch-hhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 543 234445566667777767788888888888866432222211 25778888999999999999999999998
Q ss_pred hcCCc-hhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCH
Q 009636 313 VTGDD-MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360 (530)
Q Consensus 313 ~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~ 360 (530)
....+ .....+. ..+-+.++.++ ++ +++++..++..|.-++...+
T Consensus 284 ~~~~~~~~~~~~~-~rl~~pLv~L~-ss-~~eiqyvaLr~I~~i~~~~P 329 (746)
T PTZ00429 284 ASRCSQELIERCT-VRVNTALLTLS-RR-DAETQYIVCKNIHALLVIFP 329 (746)
T ss_pred cCcCCHHHHHHHH-HHHHHHHHHhh-CC-CccHHHHHHHHHHHHHHHCH
Confidence 76432 2111111 12234455553 44 67788777777766655444
No 36
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.47 E-value=1.4e-12 Score=106.52 Aligned_cols=119 Identities=35% Similarity=0.611 Sum_probs=110.3
Q ss_pred HHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCC
Q 009636 111 EVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS 190 (530)
Q Consensus 111 ~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~ 190 (530)
.+++.|+++.+++++.+++ +.++..++++|.+++..+++....+++.|+++.++.++.++++.++..++|+|+|++.+.
T Consensus 2 ~~~~~~~i~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred hHHHcCChHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 3567899999999999888 899999999999999988999999999999999999999999999999999999999988
Q ss_pred chhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009636 191 PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (530)
Q Consensus 191 ~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~ 231 (530)
+..+..+...|+++.+++++ .+.+..+++.++|+|.+|+.
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHHCCChHHHHHHH-hcCCHHHHHHHHHHHHHhhC
Confidence 77788888899999999999 66789999999999999874
No 37
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=1.5e-11 Score=119.89 Aligned_cols=316 Identities=14% Similarity=0.171 Sum_probs=219.6
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHh----CCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCc
Q 009636 116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVID----HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP 191 (530)
Q Consensus 116 g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~----~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~ 191 (530)
.++|.|+++|.+++ ...++-|..+|..++.++++..+.-+. .-.+|.++++.+++++.+|..|+.++..+....+
T Consensus 128 elLp~L~~~L~s~d-~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~ 206 (885)
T KOG2023|consen 128 ELLPQLCELLDSPD-YNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQT 206 (885)
T ss_pred hHHHHHHHHhcCCc-ccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCc
Confidence 46999999999988 788999999999999987766554221 2368999999999999999999999988765544
Q ss_pred hhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 009636 192 RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLS 271 (530)
Q Consensus 192 ~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~ 271 (530)
..-..-+ ..++..+..+. .+.++++++++|.++..|....+..-.....++++.++...+..|++|.-.||.....++
T Consensus 207 qal~~~i-D~Fle~lFala-nD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~a 284 (885)
T KOG2023|consen 207 QALYVHI-DKFLEILFALA-NDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALA 284 (885)
T ss_pred HHHHHHH-HHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHh
Confidence 2211111 12455566655 788999999999999999998887777788999999999999999999999999999988
Q ss_pred cCChH--HHHHHHHhCcHHHHHHhhCCCC---------------------------------------------------
Q 009636 272 DGTND--KIQAVIEAGVFPRLAEFLMHPS--------------------------------------------------- 298 (530)
Q Consensus 272 ~~~~~--~~~~~~~~~~l~~L~~lL~~~~--------------------------------------------------- 298 (530)
+.+.. .....+. .++|.|+.-+..++
T Consensus 285 eqpi~~~~L~p~l~-kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDd 363 (885)
T KOG2023|consen 285 EQPICKEVLQPYLD-KLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDD 363 (885)
T ss_pred cCcCcHHHHHHHHH-HHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccc
Confidence 77531 1111111 45555554332211
Q ss_pred -----chhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHH
Q 009636 299 -----PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIG 373 (530)
Q Consensus 299 -----~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~ 373 (530)
|.+|..+..+|.-++.--. +.++ .-++|.|-..|.++ +-.+|+.+..+++.++.|.-...-.-+ ..++|
T Consensus 364 D~~~dWNLRkCSAAaLDVLanvf~---~elL-~~l~PlLk~~L~~~-~W~vrEagvLAlGAIAEGcM~g~~p~L-peLip 437 (885)
T KOG2023|consen 364 DAFSDWNLRKCSAAALDVLANVFG---DELL-PILLPLLKEHLSSE-EWKVREAGVLALGAIAEGCMQGFVPHL-PELIP 437 (885)
T ss_pred cccccccHhhccHHHHHHHHHhhH---HHHH-HHHHHHHHHHcCcc-hhhhhhhhHHHHHHHHHHHhhhcccch-HHHHH
Confidence 3344443333333332111 1111 12455555556666 788999999999999987543221111 13789
Q ss_pred HHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHH-HHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHh
Q 009636 374 PLVALLENAEFDIKKEAAWAISNATSGGTHEQI-KFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKV 443 (530)
Q Consensus 374 ~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~-~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~ 443 (530)
.|+.+|.+..+-||.-.||+|+..+...-.+.. +++. .++..|.+.+-+++.++++.|+.++..+-+.
T Consensus 438 ~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~--pvL~~ll~~llD~NK~VQEAAcsAfAtleE~ 506 (885)
T KOG2023|consen 438 FLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFK--PVLEGLLRRLLDSNKKVQEAACSAFATLEEE 506 (885)
T ss_pred HHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhH--HHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999988763311111 2221 2455666666678899999999998877643
No 38
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.46 E-value=1.9e-12 Score=105.79 Aligned_cols=118 Identities=34% Similarity=0.505 Sum_probs=110.3
Q ss_pred HHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCH
Q 009636 281 VIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360 (530)
Q Consensus 281 ~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~ 360 (530)
+++.|+++.+++++.+.++.++..+++++++++...+.....+++.|+++.++.++.++ ++.++..++|+|+|++.+.+
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCcH
Confidence 56779999999999999999999999999999998888888888999999999999998 99999999999999999887
Q ss_pred HHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009636 361 EQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS 399 (530)
Q Consensus 361 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 399 (530)
.....+.+.|+++.|++++...+.+++..++++|.|++.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 888888899999999999999999999999999999863
No 39
>PTZ00429 beta-adaptin; Provisional
Probab=99.44 E-value=1.1e-09 Score=114.24 Aligned_cols=294 Identities=16% Similarity=0.102 Sum_probs=207.7
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009636 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (530)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (530)
+.+..+.+.|.+.+...+..|++.+....... .+. +.+.+.+++++.+.+ ..++.-....+.+++...++..
T Consensus 32 ge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G-~Dv------S~LF~dVvk~~~S~d-~elKKLvYLYL~~ya~~~pela 103 (746)
T PTZ00429 32 GEGAELQNDLNGTDSYRKKAAVKRIIANMTMG-RDV------SYLFVDVVKLAPSTD-LELKKLVYLYVLSTARLQPEKA 103 (746)
T ss_pred chHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC-CCc------hHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcccChHHH
Confidence 35577788888888888888888776665443 222 224777888888888 8999999999999988666643
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009636 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (530)
Q Consensus 153 ~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~ 232 (530)
-. +++.|.+=+.++++.+|-.|++++++|... ..-+. .+.++.+.+ .+.++.+++.|+.++..+...
T Consensus 104 lL-----aINtl~KDl~d~Np~IRaLALRtLs~Ir~~--~i~e~-----l~~~lkk~L-~D~~pYVRKtAalai~Kly~~ 170 (746)
T PTZ00429 104 LL-----AVNTFLQDTTNSSPVVRALAVRTMMCIRVS--SVLEY-----TLEPLRRAV-ADPDPYVRKTAAMGLGKLFHD 170 (746)
T ss_pred HH-----HHHHHHHHcCCCCHHHHHHHHHHHHcCCcH--HHHHH-----HHHHHHHHh-cCCCHHHHHHHHHHHHHHHhh
Confidence 22 367888888899999999999999998422 12222 456677777 788999999999999999876
Q ss_pred CCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHh
Q 009636 233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312 (530)
Q Consensus 233 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl 312 (530)
.+. .....+.++.|..++.+.|+.|..+|+.+|..+....+.... ...+.+..++..+...++-.+...+.+|...
T Consensus 171 ~pe--lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~--l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y 246 (746)
T PTZ00429 171 DMQ--LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE--SSNEWVNRLVYHLPECNEWGQLYILELLAAQ 246 (746)
T ss_pred Ccc--cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH--HHHHHHHHHHHHhhcCChHHHHHHHHHHHhc
Confidence 543 233456788899999999999999999999999866544332 2345677788888776766777777777553
Q ss_pred hcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHH
Q 009636 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQAVIEANIIGPLVALLENAEFDIKKEAA 391 (530)
Q Consensus 313 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~ 391 (530)
...++... ..++..+...|++. ++.|.-+|+.++.++... +++....+.. .+.+.|+.++ ++++++|.-++
T Consensus 247 ~P~~~~e~-----~~il~~l~~~Lq~~-N~AVVl~Aik~il~l~~~~~~~~~~~~~~-rl~~pLv~L~-ss~~eiqyvaL 318 (746)
T PTZ00429 247 RPSDKESA-----ETLLTRVLPRMSHQ-NPAVVMGAIKVVANLASRCSQELIERCTV-RVNTALLTLS-RRDAETQYIVC 318 (746)
T ss_pred CCCCcHHH-----HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcCcCCHHHHHHHHH-HHHHHHHHhh-CCCccHHHHHH
Confidence 32222111 35677888889998 899999999999988754 2333222221 2334555553 45567777777
Q ss_pred HHHHHhhc
Q 009636 392 WAISNATS 399 (530)
Q Consensus 392 ~aL~nl~~ 399 (530)
..|.-++.
T Consensus 319 r~I~~i~~ 326 (746)
T PTZ00429 319 KNIHALLV 326 (746)
T ss_pred HHHHHHHH
Confidence 66655544
No 40
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.43 E-value=2.5e-10 Score=110.60 Aligned_cols=322 Identities=13% Similarity=0.167 Sum_probs=230.1
Q ss_pred ChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhhhhHhhc-----CChHHHHHhhcCCCchhHHHHHHHHhhhhccCC
Q 009636 160 AVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQ-----GGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (530)
Q Consensus 160 ~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~-----~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~ 233 (530)
.+..++.++.. ...++.+.++..+..+..+.+.....+.+. ....+++.++ ...|..+...++.+++.+....
T Consensus 54 y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL-~~~d~~i~~~a~~iLt~l~~~~ 132 (429)
T cd00256 54 YVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLL-NRQDQFIVHMSFSILAKLACFG 132 (429)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHH-cCCchhHHHHHHHHHHHHHhcC
Confidence 45666777765 567888888888888888877655555543 4677888888 6778899999999999998765
Q ss_pred CCCCh-hhhhchHHHHHHhhcCC-ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC--CchhHHHHHHHH
Q 009636 234 PQPPF-DQVSPALPALAHLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP--SPSVLIPALRTV 309 (530)
Q Consensus 234 ~~~~~-~~~~~~l~~L~~ll~~~-d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~~~~~al~~L 309 (530)
+.... ......+..+...+.+. +...+.-++.++..+...+..+ ..+.+.++++.|+.+|+.. ...++..++.++
T Consensus 133 ~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R-~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~l 211 (429)
T cd00256 133 LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYR-FAFVLADGVPTLVKLLSNATLGFQLQYQSIFCI 211 (429)
T ss_pred ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHH-HHHHHccCHHHHHHHHhhccccHHHHHHHHHHH
Confidence 33221 22223444555666554 4566677778898888776654 5577788999999999764 457888999999
Q ss_pred hHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCC------HHHHHHHHHhCcHHHHHHHHhcC-
Q 009636 310 GNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN------REQIQAVIEANIIGPLVALLENA- 382 (530)
Q Consensus 310 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~------~~~~~~l~~~~~i~~L~~ll~~~- 382 (530)
+-++...+ ........++++.++.+++......+-+-+..++.|+...+ ......+++.|+.+.+-.+....
T Consensus 212 WlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~ 290 (429)
T cd00256 212 WLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKY 290 (429)
T ss_pred HHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCC
Confidence 98887544 44455678999999999998767889999999999998732 22344566777766554444332
Q ss_pred -chhHHHHHHHH-------HHHhhcC---------C-------------CHHHHHHHHHcC--ChHHHHhccC-CCChHH
Q 009636 383 -EFDIKKEAAWA-------ISNATSG---------G-------------THEQIKFLVIQG--CIKPLCDLLV-CPDPRI 429 (530)
Q Consensus 383 -~~~v~~~a~~a-------L~nl~~~---------~-------------~~~~~~~l~~~~--~i~~L~~lL~-~~~~~~ 429 (530)
|+++....-.. +..++.. | -.+....|.+.+ ++..|+.+|+ +.|+.+
T Consensus 291 ~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~ 370 (429)
T cd00256 291 DDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPII 370 (429)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcce
Confidence 55544322211 1111110 0 134555666554 3788999995 678888
Q ss_pred HHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009636 430 VTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL 495 (530)
Q Consensus 430 ~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~ 495 (530)
+..|+.=++.+++..|. .+..++..|+-+.+.+|++|+|++|+..|...+++++.
T Consensus 371 laVAc~Dige~vr~~P~-----------gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 371 LAVACHDIGEYVRHYPR-----------GKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred eehhhhhHHHHHHHCcc-----------HHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 89999999999988765 36778899999999999999999999999999998754
No 41
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.42 E-value=2.3e-11 Score=126.56 Aligned_cols=328 Identities=19% Similarity=0.195 Sum_probs=232.2
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009636 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (530)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (530)
...+.+++.+.+.+...+..+--.+..+... .+..-.+ ++..+.+=+.+++ +.++..|++++++++. ++..
T Consensus 42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~--~~~~~~l----~~n~l~kdl~~~n-~~~~~lAL~~l~~i~~--~~~~ 112 (526)
T PF01602_consen 42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHE--DPELLIL----IINSLQKDLNSPN-PYIRGLALRTLSNIRT--PEMA 112 (526)
T ss_dssp STHHHHHCTCSSSSHHHHHHHHHHHHHHTTT--SHHHHHH----HHHHHHHHHCSSS-HHHHHHHHHHHHHH-S--HHHH
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhc--chhHHHH----HHHHHHHhhcCCC-HHHHHHHHhhhhhhcc--cchh
Confidence 4789999999999999998888888877654 2332222 4667777788888 9999999999999985 5555
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009636 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (530)
Q Consensus 153 ~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~ 232 (530)
..+ ++.+.+++.++++.+|..|+.++..+....|.. +... .++.+.+++ .+.++.++.+|+.++..+ ..
T Consensus 113 ~~l-----~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL-~d~~~~V~~~a~~~l~~i-~~ 181 (526)
T PF01602_consen 113 EPL-----IPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLL-SDKDPSVVSAALSLLSEI-KC 181 (526)
T ss_dssp HHH-----HHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHT-THSSHHHHHHHHHHHHHH-HC
T ss_pred hHH-----HHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhc-cCCcchhHHHHHHHHHHH-cc
Confidence 544 678899999999999999999999998665542 2222 578888888 788899999999999999 22
Q ss_pred CCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHh
Q 009636 233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312 (530)
Q Consensus 233 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl 312 (530)
.+..........+..|..++...++..+..++..+..++......... ..+++.+..++.+.++.+...++.++..+
T Consensus 182 ~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l 258 (526)
T PF01602_consen 182 NDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKL 258 (526)
T ss_dssp THHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 111101344566666777777889999999999999888766544311 35677888888888888888888888877
Q ss_pred hcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHh-cCchhHHHHHH
Q 009636 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLE-NAEFDIKKEAA 391 (530)
Q Consensus 313 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~ 391 (530)
..... .-..+++.|..++.++ ++.++..++..|..++...+..+. .. ...+..+. +.+..+|..++
T Consensus 259 ~~~~~------~~~~~~~~L~~lL~s~-~~nvr~~~L~~L~~l~~~~~~~v~-----~~-~~~~~~l~~~~d~~Ir~~~l 325 (526)
T PF01602_consen 259 SPSPE------LLQKAINPLIKLLSSS-DPNVRYIALDSLSQLAQSNPPAVF-----NQ-SLILFFLLYDDDPSIRKKAL 325 (526)
T ss_dssp SSSHH------HHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHCCHCHHHHG-----TH-HHHHHHHHCSSSHHHHHHHH
T ss_pred hcchH------HHHhhHHHHHHHhhcc-cchhehhHHHHHHHhhcccchhhh-----hh-hhhhheecCCCChhHHHHHH
Confidence 65333 2345678888889877 888999999999999876533222 11 22233344 66788888888
Q ss_pred HHHHHhhcCCCHHHHHHHHHcCChHHHHhcc-CCCChHHHHHHHHHHHHHHHhh
Q 009636 392 WAISNATSGGTHEQIKFLVIQGCIKPLCDLL-VCPDPRIVTVCLEGLENILKVG 444 (530)
Q Consensus 392 ~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL-~~~~~~~~~~al~~l~~ll~~~ 444 (530)
..|.+++.. ..... +++.|...+ +..+++++..++..+..+....
T Consensus 326 ~lL~~l~~~---~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~ 371 (526)
T PF01602_consen 326 DLLYKLANE---SNVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAEKF 371 (526)
T ss_dssp HHHHHH--H---HHHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcccc---cchhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHhcc
Confidence 888888763 23232 456666666 4446667777777776665444
No 42
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.42 E-value=2.5e-10 Score=118.79 Aligned_cols=326 Identities=20% Similarity=0.225 Sum_probs=237.2
Q ss_pred HHHHhhcCC--ChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 009636 77 VMVAGVWSN--DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV 154 (530)
Q Consensus 77 ~l~~~l~s~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~ 154 (530)
.+.+.+.+. +...+..++..+..+...+ . .. +.+.+.+++++.+.+ ...+.-+.-++..+...+++....
T Consensus 8 el~~~~~~~~~~~~~~~~~l~kli~~~~~G-~-~~-----~~~~~~vi~l~~s~~-~~~Krl~yl~l~~~~~~~~~~~~l 79 (526)
T PF01602_consen 8 ELAKILNSFKIDISKKKEALKKLIYLMMLG-Y-DI-----SFLFMEVIKLISSKD-LELKRLGYLYLSLYLHEDPELLIL 79 (526)
T ss_dssp HHHHHHHCSSTHHHHHHHHHHHHHHHHHTT----------GSTHHHHHCTCSSSS-HHHHHHHHHHHHHHTTTSHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHcC-C-CC-----chHHHHHHHHhCCCC-HHHHHHHHHHHHHHhhcchhHHHH
Confidence 344444444 6777777777777665443 2 12 246888899999777 899999999999999877763332
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCC
Q 009636 155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP 234 (530)
Q Consensus 155 ~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~ 234 (530)
++..+.+-+.++++.++..|+.+|++++ .++..+. .++.+.+++ .++++.+++.|+.++..+....|
T Consensus 80 -----~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~-----l~~~v~~ll-~~~~~~VRk~A~~~l~~i~~~~p 146 (526)
T PF01602_consen 80 -----IINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEP-----LIPDVIKLL-SDPSPYVRKKAALALLKIYRKDP 146 (526)
T ss_dssp -----HHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHH-----HHHHHHHHH-HSSSHHHHHHHHHHHHHHHHHCH
T ss_pred -----HHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhH-----HHHHHHHHh-cCCchHHHHHHHHHHHHHhccCH
Confidence 3577888899999999999999999996 3323222 577788888 78889999999999999998754
Q ss_pred CCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhc
Q 009636 235 QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT 314 (530)
Q Consensus 235 ~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~ 314 (530)
.. .... +++.+..++.+.++.++..++.++..+ ...+.....+ -..++..|..++...++-.+..+++++..++.
T Consensus 147 ~~--~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~-~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~ 221 (526)
T PF01602_consen 147 DL--VEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSL-IPKLIRILCQLLSDPDPWLQIKILRLLRRYAP 221 (526)
T ss_dssp CC--HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTH-HHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTS
T ss_pred HH--HHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhh-HHHHHHHhhhcccccchHHHHHHHHHHHhccc
Confidence 32 1112 689999999999999999999999998 3333221112 22456677777788899999999999999987
Q ss_pred CCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHH
Q 009636 315 GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAI 394 (530)
Q Consensus 315 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL 394 (530)
..+..... ..+++.+..++.+. .+.|..+++.++..+....+ .-..+++.|..++.+.++.++..++.+|
T Consensus 222 ~~~~~~~~---~~~i~~l~~~l~s~-~~~V~~e~~~~i~~l~~~~~------~~~~~~~~L~~lL~s~~~nvr~~~L~~L 291 (526)
T PF01602_consen 222 MEPEDADK---NRIIEPLLNLLQSS-SPSVVYEAIRLIIKLSPSPE------LLQKAINPLIKLLSSSDPNVRYIALDSL 291 (526)
T ss_dssp SSHHHHHH---HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHSSSHH------HHHHHHHHHHHHHTSSSHHHHHHHHHHH
T ss_pred CChhhhhH---HHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhcchH------HHHhhHHHHHHHhhcccchhehhHHHHH
Confidence 66544421 45778888888888 89999999999998865432 2235788999999999999999999999
Q ss_pred HHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhh
Q 009636 395 SNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG 444 (530)
Q Consensus 395 ~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~ 444 (530)
..++... +.. +. .....+..+..++|..++..+++.|..+....
T Consensus 292 ~~l~~~~-~~~----v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~ 335 (526)
T PF01602_consen 292 SQLAQSN-PPA----VF-NQSLILFFLLYDDDPSIRKKALDLLYKLANES 335 (526)
T ss_dssp HHHCCHC-HHH----HG-THHHHHHHHHCSSSHHHHHHHHHHHHHH--HH
T ss_pred HHhhccc-chh----hh-hhhhhhheecCCCChhHHHHHHHHHhhccccc
Confidence 9998863 222 22 22222333344888899999999999888644
No 43
>PF01749 IBB: Importin beta binding domain; InterPro: IPR002652 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. Members of the importin-alpha (karyopherin-alpha) family can form heterodimers with importin-beta. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Proteins can contain one (monopartite) or two (bipartite) NLS motifs. Importin-alpha contains several armadillo (ARM) repeats, which produce a curving structure with two NLS-binding sites, a major one close to the N terminus and a minor one close to the C terminus. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. The N-terminal importin-beta-binding (IBB) domain of importin-alpha contains an auto-regulatory region that mimics the NLS motif []. The release of importin-beta frees the auto-regulatory region on importin-alpha to loop back and bind to the major NLS-binding site, causing the cargo to be released []. This entry represents the N-terminal IBB domain of importin-alpha that contains the auto-regulatory region. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006606 protein import into nucleus, 0006886 intracellular protein transport, 0005634 nucleus, 0005737 cytoplasm; PDB: 1BK5_B 1UN0_A 1WA5_B 2C1T_A 1EE4_A 1BK6_A 1EE5_A 3TJ3_A 2JDQ_A 3FEY_C ....
Probab=99.40 E-value=8.7e-14 Score=106.27 Aligned_cols=90 Identities=43% Similarity=0.629 Sum_probs=60.2
Q ss_pred CCCchHhhhhcCC-CCCchHHhhhhhhHHHHHHHHhhhHHHHhhhhccccCCCCCcc-C-CCC-CchhhhcCCHHHHHHh
Q 009636 6 NSKADSRRNKYKV-AVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLAN-D-VNA-PGTAKKLENLPVMVAG 81 (530)
Q Consensus 6 ~~~~~~~~~~~k~-~~~~~e~~~~r~~~~~~lRk~~r~~~l~~~R~~~~~~~~~~~~-~-~~~-~~~~~~~~~l~~l~~~ 81 (530)
+...+.|++.||+ +++++|+|+||++..++|||+||++.|.|||++........+. . ... .........++.++..
T Consensus 3 ~~~~~~R~~~yK~~g~d~~e~RrrRee~~veLRK~KReE~l~KRRn~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~ 82 (97)
T PF01749_consen 3 SKKPENRRKSYKNKGKDAEEMRRRREEEQVELRKQKREEQLQKRRNINMADEESSSEESESDQNSSAQQLNEELPEMVAG 82 (97)
T ss_dssp ----GGGGGGSTTTT-SHHHHHHHCCCCHHHHCHHHHHCCHSCCHT-----------------TCCCCS--HHHHHHHHH
T ss_pred ccCHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccccccccccccccccccccHHHHHh
Confidence 4467899999999 5899999999999999999999999999999986543332111 1 001 1112223467899999
Q ss_pred hcCCChHHHHHHHH
Q 009636 82 VWSNDSGVQYECTT 95 (530)
Q Consensus 82 l~s~~~~~~~~a~~ 95 (530)
+.|+|+..|+.|..
T Consensus 83 v~S~d~~~ql~Atq 96 (97)
T PF01749_consen 83 VNSDDPEVQLEATQ 96 (97)
T ss_dssp HTSSCHHHHHHHHH
T ss_pred cCCCCHHHHHHhhC
Confidence 99999999999875
No 44
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.39 E-value=4.4e-10 Score=108.87 Aligned_cols=321 Identities=12% Similarity=0.096 Sum_probs=226.0
Q ss_pred CHHHHHHhhcC-CChHHHHHHHHHHHHhhcCCCCCcHHHHHHc-----CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC
Q 009636 74 NLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRS-----GVVPRFVEFLLREDYPQLQFEAAWALTNIASG 147 (530)
Q Consensus 74 ~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~-----g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~ 147 (530)
....++..+.. ..+++....+..+..++... +.....+.+. .....++.+|..++ .-++..|+.+|+.+...
T Consensus 54 y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~-~~~~~~f~~~~~~~~~~~~~fl~lL~~~d-~~i~~~a~~iLt~l~~~ 131 (429)
T cd00256 54 YVKTFVNLLSQIDKDDTVRYVLTLIDDMLQED-DTRVKLFHDDALLKKKTWEPFFNLLNRQD-QFIVHMSFSILAKLACF 131 (429)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc-hHHHHHHHHHhhccccchHHHHHHHcCCc-hhHHHHHHHHHHHHHhc
Confidence 45677777764 55677778888888888773 3334445443 56677888998877 89999999999999875
Q ss_pred ChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCC-chhHHHHHHHH
Q 009636 148 TSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP-KLSMLRNATWT 225 (530)
Q Consensus 148 ~~~~~~~~~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~-~~~~~~~a~~~ 225 (530)
.+.........-.++.|...+++ .+...+..|+.+|..+....+ +|..+.+.+++++|+.+|.... +.+++..++.|
T Consensus 132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~-~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~ 210 (429)
T cd00256 132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDE-YRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFC 210 (429)
T ss_pred CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCch-HHHHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence 43321111111133455556655 346778889999999987766 8988888889999999996444 67999999999
Q ss_pred hhhhccCCCCCChhhhhchHHHHHHhhcCC-ChhHHHHHHHHHHHhccCC------hHHHHHHHHhCcHHHHHHhhCCC-
Q 009636 226 LSNFCRGKPQPPFDQVSPALPALAHLIHSN-DDEVLTDACWALSYLSDGT------NDKIQAVIEAGVFPRLAEFLMHP- 297 (530)
Q Consensus 226 L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~-d~~v~~~a~~~l~~l~~~~------~~~~~~~~~~~~l~~L~~lL~~~- 297 (530)
++-|+...+........++++.++.+++.. .+.+..-++.++.|+.... ......+++.|+++ ++..|...
T Consensus 211 lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l~~L~~rk 289 (429)
T cd00256 211 IWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK-TLQSLEQRK 289 (429)
T ss_pred HHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH-HHHHHhcCC
Confidence 999998865444444578999999999865 6778888999999998743 12334566667655 44445442
Q ss_pred --CchhHHHHHHHH--------hHhhcC--------------Cchh---------hHHHh--hcCchHHHHHhhcCCCch
Q 009636 298 --SPSVLIPALRTV--------GNIVTG--------------DDMQ---------TQCVI--EYQALPCLLNLLSGNYKK 342 (530)
Q Consensus 298 --~~~~~~~al~~L--------~nl~~~--------------~~~~---------~~~~~--~~~~l~~L~~lL~~~~~~ 342 (530)
++++... +..| -.+++. ++.+ ...+- +..++..|..+|..+.++
T Consensus 290 ~~DedL~ed-l~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~ 368 (429)
T cd00256 290 YDDEDLTDD-LKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDP 368 (429)
T ss_pred CCcHHHHHH-HHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCc
Confidence 3333221 1111 111110 1111 11112 124688999999655488
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009636 343 SIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS 399 (530)
Q Consensus 343 ~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 399 (530)
.+...||.=|+.++...|.....+-+.|+=..+++++.++|++||.+|+.|+..+..
T Consensus 369 ~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 369 IILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred ceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 888999999999999888887777788999999999999999999999999988765
No 45
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=2.2e-10 Score=113.81 Aligned_cols=367 Identities=17% Similarity=0.206 Sum_probs=233.7
Q ss_pred CCHHHHHHhhc----CCChH-HHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhc-CCCCHHHHHHHHHHHHHHhc
Q 009636 73 ENLPVMVAGVW----SNDSG-VQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLL-REDYPQLQFEAAWALTNIAS 146 (530)
Q Consensus 73 ~~l~~l~~~l~----s~~~~-~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~-~~~~~~i~~~a~~~L~~l~~ 146 (530)
+.+|.++..|. .+.+. ++..++.++..+...- .|....--.+.++-.++.-+. .+.+..+|..|+.+|.|-..
T Consensus 125 n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i-~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLe 203 (859)
T KOG1241|consen 125 NQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDI-DPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLE 203 (859)
T ss_pred hhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccC-CHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHH
Confidence 45666666554 44444 7778899999776442 222111112445566665544 33357899999999998654
Q ss_pred CCh-hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHH
Q 009636 147 GTS-EHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWT 225 (530)
Q Consensus 147 ~~~-~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~ 225 (530)
... ......-.+-++...+..-.+++.+++..|+.+|..|..-..++-..-+....+..-+.-+ ++++.++.-.+...
T Consensus 204 f~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~am-ks~~deValQaiEF 282 (859)
T KOG1241|consen 204 FTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAM-KSDNDEVALQAIEF 282 (859)
T ss_pred HHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHH
Confidence 222 1111222234566677777889999999999999999754332222222222333344455 68899999999999
Q ss_pred hhhhccCCCC-------------C--Ch----hhhhchHHHHHHhhcCCC-------hhHHHHHHHHHHHhccCChHHHH
Q 009636 226 LSNFCRGKPQ-------------P--PF----DQVSPALPALAHLIHSND-------DEVLTDACWALSYLSDGTNDKIQ 279 (530)
Q Consensus 226 L~~L~~~~~~-------------~--~~----~~~~~~l~~L~~ll~~~d-------~~v~~~a~~~l~~l~~~~~~~~~ 279 (530)
.+++|..... + .. .....++|.|+.+|...| ......+..||.-++....+.
T Consensus 283 WsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~-- 360 (859)
T KOG1241|consen 283 WSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDD-- 360 (859)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhccc--
Confidence 9988864311 1 01 123578888888887521 234445555555544332221
Q ss_pred HHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCC
Q 009636 280 AVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN 359 (530)
Q Consensus 280 ~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~ 359 (530)
++. .+++.+-.-+++++|.-+..|..++|.+..+.+.....-+-.+.+|.++.++.++ .-.++..++|+++.++.+.
T Consensus 361 -Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~-sl~VkdTaAwtlgrI~d~l 437 (859)
T KOG1241|consen 361 -IVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDP-SLWVKDTAAWTLGRIADFL 437 (859)
T ss_pred -chh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCc-hhhhcchHHHHHHHHHhhc
Confidence 122 4556666667889999999999999999999887777777789999999999977 8889999999999999876
Q ss_pred HHHHHHHH-HhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHH----HHH---cCChHHHHhccC---CCChH
Q 009636 360 REQIQAVI-EANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKF----LVI---QGCIKPLCDLLV---CPDPR 428 (530)
Q Consensus 360 ~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~----l~~---~~~i~~L~~lL~---~~~~~ 428 (530)
++.+..-. ..+.++.++.-|.+ .|++...++|++.+++.......... ... ..++..|+..-+ ..+..
T Consensus 438 ~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsN 516 (859)
T KOG1241|consen 438 PEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSN 516 (859)
T ss_pred hhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhh
Confidence 65432222 24566677766664 68999999999999985321000000 000 012333333332 24566
Q ss_pred HHHHHHHHHHHHHHhhhhh
Q 009636 429 IVTVCLEGLENILKVGEAE 447 (530)
Q Consensus 429 ~~~~al~~l~~ll~~~~~~ 447 (530)
++..+.++|..+++..+..
T Consensus 517 LR~AAYeALmElIk~st~~ 535 (859)
T KOG1241|consen 517 LRSAAYEALMELIKNSTDD 535 (859)
T ss_pred HHHHHHHHHHHHHHcCcHH
Confidence 8888888888888776553
No 46
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=3.6e-09 Score=106.40 Aligned_cols=343 Identities=16% Similarity=0.185 Sum_probs=244.0
Q ss_pred CHHHHHHhhcC-CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009636 74 NLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (530)
Q Consensus 74 ~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (530)
.+|.|+.+|+. .+.+++..|++++..++..- ++....+++.++||.|++-|..-...++.++++.+|-.|+...+
T Consensus 212 lvp~Lv~LL~~E~n~DIMl~AcRaltyl~evl-P~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~--- 287 (1051)
T KOG0168|consen 212 LVPVLVALLSHEHNFDIMLLACRALTYLCEVL-PRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP--- 287 (1051)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHhhc-cchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc---
Confidence 57888888886 45899999999999997663 55677788999999999877766668999999999999998443
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCc-hhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009636 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP-RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (530)
Q Consensus 153 ~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~-~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~ 231 (530)
..+.+.|++...+.++.--+..+++.|+.+..|+|..-+ +--..+++ .+|.|..+| ...|....++++-|+..++.
T Consensus 288 ~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~e--alPlL~~lL-s~~D~k~ies~~ic~~ri~d 364 (1051)
T KOG0168|consen 288 KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVME--ALPLLTPLL-SYQDKKPIESVCICLTRIAD 364 (1051)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHH--HHHHHHHHH-hhccchhHHHHHHHHHHHHH
Confidence 467889999999999987778899999999999995432 12233443 788888888 77888899999999999988
Q ss_pred CC-CCCC---hhhhhchHHHHHHhhcCCC----hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCC-----
Q 009636 232 GK-PQPP---FDQVSPALPALAHLIHSND----DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS----- 298 (530)
Q Consensus 232 ~~-~~~~---~~~~~~~l~~L~~ll~~~d----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~----- 298 (530)
.. +.+. .....+++....+++...+ ..+-.-.++.+.-++.+.+.....+.+.++...|..+|....
T Consensus 365 ~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~na 444 (1051)
T KOG0168|consen 365 GFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANA 444 (1051)
T ss_pred hcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCccc
Confidence 76 2222 2334677777777776543 234445667778888887766677777788887777775421
Q ss_pred ---------chhHHHHH----------------------------------------------------HHHhHhhc--C
Q 009636 299 ---------PSVLIPAL----------------------------------------------------RTVGNIVT--G 315 (530)
Q Consensus 299 ---------~~~~~~al----------------------------------------------------~~L~nl~~--~ 315 (530)
+.-..... +++..+-. +
T Consensus 445 s~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~ 524 (1051)
T KOG0168|consen 445 SLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTG 524 (1051)
T ss_pred ccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhcccccccccccccCccccccccccchhhhhhhhhhccCcc
Confidence 10000000 11110000 0
Q ss_pred ---------CchhhHHHh----------hcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHH-hCcHHH
Q 009636 316 ---------DDMQTQCVI----------EYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQAVIE-ANIIGP 374 (530)
Q Consensus 316 ---------~~~~~~~~~----------~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~-~~~i~~ 374 (530)
+..-...++ -..++|.|+++..+.-++.||..+..+|..+.. .+.+.+..++. .++-..
T Consensus 525 t~~~~~dkl~~~~r~~~l~nqpel~q~F~~~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~ 604 (1051)
T KOG0168|consen 525 TSRKQQDKLNGSAREGLLKNQPELLQSFGKDLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSH 604 (1051)
T ss_pred cchhhhhhcCCchhhhhhhcCHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHH
Confidence 000001111 124688888888877689999999999999887 56777777775 445556
Q ss_pred HHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccC
Q 009636 375 LVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV 423 (530)
Q Consensus 375 L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~ 423 (530)
+-.+|.+.+..|..-|+...--|+..-..-+...+...|++..+-.+..
T Consensus 605 lAG~lsskD~~vlVgALQvAEiLmeKlpd~F~~~F~REGV~~~v~~L~~ 653 (1051)
T KOG0168|consen 605 LAGMLSSKDLTVLVGALQVAEILMEKLPDTFSPSFRREGVFHAVKQLSV 653 (1051)
T ss_pred HHhhhhcCCCeeEeehHHHHHHHHHHhHHHhhhhHhhhhHHHHHHHHhc
Confidence 6678888888888888777776766545556777888899888877776
No 47
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=3.4e-09 Score=105.58 Aligned_cols=352 Identities=14% Similarity=0.080 Sum_probs=231.5
Q ss_pred HHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhC
Q 009636 79 VAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDH 158 (530)
Q Consensus 79 ~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~ 158 (530)
+..|.+..|...-.|..++..++..+ -|.-.+ .++++.|+.....+....++..++.+|+.+|.+-....-.-..+
T Consensus 96 l~tL~~~ep~~~s~Aaq~va~IA~~E-lP~n~w---p~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN 171 (859)
T KOG1241|consen 96 LRTLGSPEPRRPSSAAQCVAAIACIE-LPQNQW---PELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSN 171 (859)
T ss_pred HHHcCCCCCCccchHHHHHHHHHHhh-CchhhC---HHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHh
Confidence 34556667777777888888887765 444333 35677777777666634589999999999998543321111124
Q ss_pred CChHHHHHhhCC--CCHHHHHHHHHHHHhhhCCC------chhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhc
Q 009636 159 GAVPIFVKLLYS--PSDDVREQAVWALGNIAGDS------PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC 230 (530)
Q Consensus 159 g~i~~L~~ll~~--~~~~i~~~a~~~L~nl~~~~------~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~ 230 (530)
.++..+++.... ++..+|-.|+.+|.|-.... +..|.. +++..+..- .++|.+++..|..||..+.
T Consensus 172 ~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~-----iMqvvcEat-q~~d~~i~~aa~~ClvkIm 245 (859)
T KOG1241|consen 172 DILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNY-----IMQVVCEAT-QSPDEEIQVAAFQCLVKIM 245 (859)
T ss_pred HHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhce-----eeeeeeecc-cCCcHHHHHHHHHHHHHHH
Confidence 677888887765 67889999999998754221 111222 233333333 6789999999999999887
Q ss_pred cCC-CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHH---HHH---------------HHhCcHHHHH
Q 009636 231 RGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKI---QAV---------------IEAGVFPRLA 291 (530)
Q Consensus 231 ~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~---~~~---------------~~~~~l~~L~ 291 (530)
.-. ......+...+++.-+..+.+++++|...++..-+++++..-+.. ... .-.+++|.|+
T Consensus 246 ~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll 325 (859)
T KOG1241|consen 246 SLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLL 325 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHH
Confidence 643 222223334455666667788899888888777777764322200 001 1126788888
Q ss_pred HhhCC-------CCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHH
Q 009636 292 EFLMH-------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQ 364 (530)
Q Consensus 292 ~lL~~-------~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 364 (530)
++|.+ ++|.....|-.||.-++...... ++. .+++.+-.-++++ +.+-|..|+.+++.+..+......
T Consensus 326 ~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~---Iv~-~Vl~Fiee~i~~p-dwr~reaavmAFGSIl~gp~~~~L 400 (859)
T KOG1241|consen 326 ELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDD---IVP-HVLPFIEENIQNP-DWRNREAAVMAFGSILEGPEPDKL 400 (859)
T ss_pred HHHHhCCCCcccccCcHHHHHHHHHHHHHHHhccc---chh-hhHHHHHHhcCCc-chhhhhHHHHHHHhhhcCCchhhh
Confidence 88865 35677777777777666533322 222 4566666677788 889999999999999887544444
Q ss_pred HHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhh
Q 009636 365 AVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG 444 (530)
Q Consensus 365 ~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~ 444 (530)
.-+-.+.+|.++.++.++...++..+.|+|+.++................+..+..-| ...|.+..+++|++..+.+..
T Consensus 401 t~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL-~DePrva~N~CWAf~~Laea~ 479 (859)
T KOG1241|consen 401 TPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGL-NDEPRVASNVCWAFISLAEAA 479 (859)
T ss_pred hHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHh-hhCchHHHHHHHHHHHHHHHH
Confidence 4444578999999999888899999999999999864321111112223344444444 357889999999999999655
Q ss_pred hh
Q 009636 445 EA 446 (530)
Q Consensus 445 ~~ 446 (530)
..
T Consensus 480 ~e 481 (859)
T KOG1241|consen 480 YE 481 (859)
T ss_pred HH
Confidence 44
No 48
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.18 E-value=2.1e-09 Score=106.37 Aligned_cols=345 Identities=13% Similarity=0.098 Sum_probs=222.9
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCC-hhh
Q 009636 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGT-SEH 151 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~-~~~i~~~a~~~L~~l~~~~-~~~ 151 (530)
.+.+++.-++++.+..+...+..+.++.+.-+...++.-.+...+..++..++.++ ...+......++.+-.... ...
T Consensus 717 ~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpy 796 (1172)
T KOG0213|consen 717 IVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPY 796 (1172)
T ss_pred HHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccc
Confidence 45677777888888888888888888876543333444334444555555555443 2233444444433322211 111
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhh--hhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhh
Q 009636 152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR--DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF 229 (530)
Q Consensus 152 ~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~--~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L 229 (530)
. ..++..++..|.++++.++.+|+.+++.|+.--..|. +.+...|. .|...| ....+++.-..+.++..+
T Consensus 797 l-----pqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEyl-geeypEvLgsILgAikaI 868 (1172)
T KOG0213|consen 797 L-----PQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYL-GEEYPEVLGSILGAIKAI 868 (1172)
T ss_pred h-----HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhc-CcccHHHHHHHHHHHHHH
Confidence 1 1245677888999999999999999999874322221 12223332 356666 777888888888888777
Q ss_pred ccCC-CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHH
Q 009636 230 CRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRT 308 (530)
Q Consensus 230 ~~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~ 308 (530)
+..- -.....-..+++|.|...|++....|+++++..++.++...++.+..---..+.--|+.+|...+..++..|..+
T Consensus 869 ~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nT 948 (1172)
T KOG0213|consen 869 VNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNT 948 (1172)
T ss_pred HHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6553 122223357889999999999999999999999999998776543322223455567888888899999999999
Q ss_pred HhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHH
Q 009636 309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKK 388 (530)
Q Consensus 309 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~ 388 (530)
+|.|+.. +-.+.++..|+.-|+.. +...|.-...+++-.+..+.. -.++|.|+.=...++..||.
T Consensus 949 fG~Iaka-------IGPqdVLatLlnnLkvq-eRq~RvcTtvaIaIVaE~c~p-------FtVLPalmneYrtPe~nVQn 1013 (1172)
T KOG0213|consen 949 FGYIAKA-------IGPQDVLATLLNNLKVQ-ERQNRVCTTVAIAIVAETCGP-------FTVLPALMNEYRTPEANVQN 1013 (1172)
T ss_pred hhHHHHh-------cCHHHHHHHHHhcchHH-HHHhchhhhhhhhhhhhhcCc-------hhhhHHHHhhccCchhHHHH
Confidence 9999852 22334556666666554 443443333334333332111 13678887777778889999
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHh
Q 009636 389 EAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKV 443 (530)
Q Consensus 389 ~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~ 443 (530)
-.+.+++.+......-..+++. -+.+.|.+.|.+.|..-+..+..++..+.-.
T Consensus 1014 GVLkalsf~FeyigemskdYiy--av~PlleDAlmDrD~vhRqta~~~I~Hl~Lg 1066 (1172)
T KOG0213|consen 1014 GVLKALSFMFEYIGEMSKDYIY--AVTPLLEDALMDRDLVHRQTAMNVIKHLALG 1066 (1172)
T ss_pred hHHHHHHHHHHHHHHHhhhHHH--HhhHHHHHhhccccHHHHHHHHHHHHHHhcC
Confidence 9999999987643323333332 2466677778888888888888888777543
No 49
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=99.15 E-value=1.4e-08 Score=94.90 Aligned_cols=323 Identities=12% Similarity=0.073 Sum_probs=226.5
Q ss_pred CHHHHHHhhcCC-ChHHHHHHHHHHHHhhcCCCCCcHHHHH-------HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHh
Q 009636 74 NLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVI-------RSGVVPRFVEFLLREDYPQLQFEAAWALTNIA 145 (530)
Q Consensus 74 ~l~~l~~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~-------~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~ 145 (530)
.+..++.++... .++....++..+..+++.. .....+. ....-+.++.+|...+ .-+...+.+++..++
T Consensus 66 ~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d--~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d-~~iv~~~~~Ils~la 142 (442)
T KOG2759|consen 66 YVKTFINLLSHIDKDDTVQYVLTLIDDMLSED--RSRVDLFHDYAHKLKRTEWLSFLNLLNRQD-TFIVEMSFRILSKLA 142 (442)
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHHhhC--chHHHHHHHHHHhhhccchHHHHHHHhcCC-hHHHHHHHHHHHHHH
Confidence 567788888753 3556667888888888874 3322221 1234667888998888 788888999999988
Q ss_pred cCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhh-cCCCchhHHHHHH
Q 009636 146 SGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQL-NGQPKLSMLRNAT 223 (530)
Q Consensus 146 ~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll-~~~~~~~~~~~a~ 223 (530)
.............-....|...+.+ .+......|+.+|..+....+ .|..+...+++..++..+ ....+.+++...+
T Consensus 143 ~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~e-yR~~~v~adg~~~l~~~l~s~~~~~QlQYqsi 221 (442)
T KOG2759|consen 143 CFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDE-YRYAFVIADGVSLLIRILASTKCGFQLQYQSI 221 (442)
T ss_pred HhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcc-hhheeeecCcchhhHHHHhccCcchhHHHHHH
Confidence 7433221110000112344445555 667778888999999887766 788888888888898888 4555889999999
Q ss_pred HHhhhhccCCCCCChhhhhchHHHHHHhhcCC-ChhHHHHHHHHHHHhccCCh------HHHHHHHHhCcHHHHHHhhCC
Q 009636 224 WTLSNFCRGKPQPPFDQVSPALPALAHLIHSN-DDEVLTDACWALSYLSDGTN------DKIQAVIEAGVFPRLAEFLMH 296 (530)
Q Consensus 224 ~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~-d~~v~~~a~~~l~~l~~~~~------~~~~~~~~~~~l~~L~~lL~~ 296 (530)
.|++.|+.+++........+.++.|...+++. .+.|..-++.++.|+....+ +....++..++.+.+-.+...
T Consensus 222 fciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~r 301 (442)
T KOG2759|consen 222 FCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEER 301 (442)
T ss_pred HHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhc
Confidence 99999998875555555678899999999865 67888889999999997764 333445565555444443332
Q ss_pred --CCchhHHHHHHHH-------hHhhcC--------------Cc---------hhhHHHh--hcCchHHHHHhhcCCCch
Q 009636 297 --PSPSVLIPALRTV-------GNIVTG--------------DD---------MQTQCVI--EYQALPCLLNLLSGNYKK 342 (530)
Q Consensus 297 --~~~~~~~~al~~L-------~nl~~~--------------~~---------~~~~~~~--~~~~l~~L~~lL~~~~~~ 342 (530)
+++++....-..- -.+++. +| +....+. +..++..|+++|+.+.+|
T Consensus 302 kysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp 381 (442)
T KOG2759|consen 302 KYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDP 381 (442)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCC
Confidence 2333332221111 111111 11 0111112 235799999999988679
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcC
Q 009636 343 SIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG 400 (530)
Q Consensus 343 ~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 400 (530)
.+...||.-|+.+..+.|+....+.+.|+=..+++++.++|++||.+|+.|+..+..+
T Consensus 382 ~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 382 IILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred ceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999888664
No 50
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=1.8e-07 Score=93.93 Aligned_cols=323 Identities=18% Similarity=0.219 Sum_probs=238.6
Q ss_pred CCHHHHHHhhcCCC-hHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCCh-
Q 009636 73 ENLPVMVAGVWSND-SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTS- 149 (530)
Q Consensus 73 ~~l~~l~~~l~s~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~-~~~i~~~a~~~L~~l~~~~~- 149 (530)
+.++.|++.+.+.. .+.|..|++.|..+.. ..+..+...| ++.|++.|+.+. ++++...++..+.++.....
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~sr----kYR~~Vga~G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~ 96 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSR----KYREEVGAQG-MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS 96 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHH----HHHHHHHHcc-cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence 58899999888654 7889999999998753 3344454555 888899887543 58999999999998887442
Q ss_pred -----hh----------HHHHH-hCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCC-chhhhhHhhc-CChHHHHHhhc
Q 009636 150 -----EH----------TKVVI-DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS-PRCRDLVLSQ-GGLVPLLAQLN 211 (530)
Q Consensus 150 -----~~----------~~~~~-~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~-~~~~~~i~~~-~~i~~Ll~ll~ 211 (530)
+. .+.++ ..+.|..|+..+...+-.+|..++..|.++.... ++.++.++.. -++..++.+|
T Consensus 97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL- 175 (970)
T KOG0946|consen 97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL- 175 (970)
T ss_pred hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH-
Confidence 11 22333 3688999999999999999999999999988654 4556665543 3688999999
Q ss_pred CCCchhHHHHHHHHhhhhccCCCCCC-hhhhhchHHHHHHhhcCC---C-hhHHHHHHHHHHHhccCChHHHHHHHHhCc
Q 009636 212 GQPKLSMLRNATWTLSNFCRGKPQPP-FDQVSPALPALAHLIHSN---D-DEVLTDACWALSYLSDGTNDKIQAVIEAGV 286 (530)
Q Consensus 212 ~~~~~~~~~~a~~~L~~L~~~~~~~~-~~~~~~~l~~L~~ll~~~---d-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~ 286 (530)
.+..+.++..++..|..|.++.+... ......++..|..++... | .-|..+|+..+.|+..+...+...+.+.+.
T Consensus 176 ~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~ 255 (970)
T KOG0946|consen 176 RDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSY 255 (970)
T ss_pred hhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcccc
Confidence 77888999999999999999985544 345678888899998754 3 468889999999999988888888999999
Q ss_pred HHHHHHhhCCC---C-----chh-----HHHHHHHHhHhhcCCc-----hhh-HHHhhcCchHHHHHhhcCCC-chhHHH
Q 009636 287 FPRLAEFLMHP---S-----PSV-----LIPALRTVGNIVTGDD-----MQT-QCVIEYQALPCLLNLLSGNY-KKSIKK 346 (530)
Q Consensus 287 l~~L~~lL~~~---~-----~~~-----~~~al~~L~nl~~~~~-----~~~-~~~~~~~~l~~L~~lL~~~~-~~~v~~ 346 (530)
+++|.++|... + |.. ...++.++..++.-.. .+. ..+...+++..|..++.++. ..+|+.
T Consensus 256 i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlt 335 (970)
T KOG0946|consen 256 IPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILT 335 (970)
T ss_pred HHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHH
Confidence 99999887642 2 322 2345666666654221 222 34557789999999998773 568999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC----------cHHHHHHHHhcC-chhHHHHHHHHHHHhhcCC
Q 009636 347 EACWTVSNITAGNREQIQAVIEAN----------IIGPLVALLENA-EFDIKKEAAWAISNATSGG 401 (530)
Q Consensus 347 ~a~~~L~nl~~~~~~~~~~l~~~~----------~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~~~ 401 (530)
++..+++++..++...-..+.+.. ++=.++.+..+. .+..|..+.+++..+....
T Consensus 336 esiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN 401 (970)
T KOG0946|consen 336 ESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDN 401 (970)
T ss_pred HHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcc
Confidence 999999999998877766665321 111222222333 6788999999998888753
No 51
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=99.10 E-value=1.1e-07 Score=89.07 Aligned_cols=322 Identities=14% Similarity=0.159 Sum_probs=216.5
Q ss_pred hHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhhhhH------hhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC
Q 009636 161 VPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLV------LSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (530)
Q Consensus 161 i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~~i------~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~ 233 (530)
+..++.+++. ..++....++..+..+...+......+ ...-.-.+.+.++ ...+.-+.....|+++.++...
T Consensus 67 v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll-~r~d~~iv~~~~~Ils~la~~g 145 (442)
T KOG2759|consen 67 VKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLL-NRQDTFIVEMSFRILSKLACFG 145 (442)
T ss_pred HHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHH-hcCChHHHHHHHHHHHHHHHhc
Confidence 4455556554 334455555555555554443211111 1222466778888 6777888888999999888776
Q ss_pred CCCChh-hhhchHHHHHHhhcC-CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC--CCchhHHHHHHHH
Q 009636 234 PQPPFD-QVSPALPALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH--PSPSVLIPALRTV 309 (530)
Q Consensus 234 ~~~~~~-~~~~~l~~L~~ll~~-~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~~~~~al~~L 309 (530)
+..... ...-....|-..+.+ .+.+....+.+||..+...++-+.. ++...++..++..+.+ .+-.++...+.|+
T Consensus 146 ~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~-~v~adg~~~l~~~l~s~~~~~QlQYqsifci 224 (442)
T KOG2759|consen 146 NCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYA-FVIADGVSLLIRILASTKCGFQLQYQSIFCI 224 (442)
T ss_pred cccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhhe-eeecCcchhhHHHHhccCcchhHHHHHHHHH
Confidence 332222 222233444555555 5677777888899888877765443 5556677788887733 4567888899999
Q ss_pred hHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCH------HHHHHHHHhCcHHHHHHHHhcC-
Q 009636 310 GNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR------EQIQAVIEANIIGPLVALLENA- 382 (530)
Q Consensus 310 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~------~~~~~l~~~~~i~~L~~ll~~~- 382 (530)
.-|.. ++...+.+...+.++.|..++++.....|-+-++.++.|++...+ +....++..++.+.+-.+-...
T Consensus 225 WlLtF-n~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rky 303 (442)
T KOG2759|consen 225 WLLTF-NPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKY 303 (442)
T ss_pred HHhhc-CHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCC
Confidence 98876 555556666779999999999987677899999999999998553 4455666777766665554433
Q ss_pred -chhHHHHHHHH-------HHHhhcC---------C-------------CHHHHHHHHHcC--ChHHHHhccCCC-ChHH
Q 009636 383 -EFDIKKEAAWA-------ISNATSG---------G-------------THEQIKFLVIQG--CIKPLCDLLVCP-DPRI 429 (530)
Q Consensus 383 -~~~v~~~a~~a-------L~nl~~~---------~-------------~~~~~~~l~~~~--~i~~L~~lL~~~-~~~~ 429 (530)
|+++....-.. ...++.. | -.+....|.+.+ ++..|+.+|+.+ ||.+
T Consensus 304 sDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~i 383 (442)
T KOG2759|consen 304 SDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPII 383 (442)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCce
Confidence 55544332221 1112211 0 124455555543 488899999854 5888
Q ss_pred HHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 009636 430 VTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLD 496 (530)
Q Consensus 430 ~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~~ 496 (530)
...|+.-++..++..+. ....++..||-+.+.+|++|+|++|+.-|...+++...+
T Consensus 384 L~VAc~DIge~Vr~yP~-----------gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 384 LCVACHDIGEYVRHYPE-----------GKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred eehhhhhHHHHHHhCch-----------HhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 88999999999988876 477899999999999999999999999999999887543
No 52
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=3.9e-08 Score=90.90 Aligned_cols=190 Identities=21% Similarity=0.245 Sum_probs=160.9
Q ss_pred CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHH
Q 009636 255 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLN 334 (530)
Q Consensus 255 ~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~ 334 (530)
.+.+-+..++.-|..+++.- ++...+++.|++..++..+.+.+..+|..|+++++..+.+++.....+++.|+++.|+.
T Consensus 95 ~~le~ke~ald~Le~lve~i-DnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDI-DNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhh-hhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 35666777777777777654 34566888899999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhc--CchhHHHHHHHHHHHhhcCCCHHHHHHHHHc
Q 009636 335 LLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLEN--AEFDIKKEAAWAISNATSGGTHEQIKFLVIQ 412 (530)
Q Consensus 335 lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~ 412 (530)
++.++.+..+|..|.++++.+...++.....+...+....|.+.+.+ .+..++..++..+..++... ......+...
T Consensus 174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~-~s~~d~~~~~ 252 (342)
T KOG2160|consen 174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQED-KSDEDIASSL 252 (342)
T ss_pred HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhh-hhhhhHHHHh
Confidence 99987567888999999999999999999999988889999999998 57889999999999998864 3333455566
Q ss_pred CChHHHHhccCCCChHHHHHHHHHHHHHHHhhhh
Q 009636 413 GCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEA 446 (530)
Q Consensus 413 ~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~ 446 (530)
++...+..+....+..+...++.++..++.....
T Consensus 253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~ 286 (342)
T KOG2160|consen 253 GFQRVLENLISSLDFEVNEAALTALLSLLSELST 286 (342)
T ss_pred hhhHHHHHHhhccchhhhHHHHHHHHHHHHHHhh
Confidence 7888888888888888888888888887765443
No 53
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=2.5e-07 Score=92.00 Aligned_cols=218 Identities=17% Similarity=0.162 Sum_probs=158.5
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009636 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 153 (530)
.-+.++.+|.+.-|-++..|+-.+-++.-.- ++..+ ..+|.|++-|.++| |.++-.|+.+++.++..+|.+.-
T Consensus 145 La~Dv~tLL~sskpYvRKkAIl~lykvFLkY-PeAlr-----~~FprL~EkLeDpD-p~V~SAAV~VICELArKnPknyL 217 (877)
T KOG1059|consen 145 LADDVFTLLNSSKPYVRKKAILLLYKVFLKY-PEALR-----PCFPRLVEKLEDPD-PSVVSAAVSVICELARKNPQNYL 217 (877)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhh-hHhHh-----hhHHHHHHhccCCC-chHHHHHHHHHHHHHhhCCcccc
Confidence 3577788888888889998888888776442 12222 25899999999998 99999999999999998877653
Q ss_pred HHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhh--hc
Q 009636 154 VVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN--FC 230 (530)
Q Consensus 154 ~~~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~--L~ 230 (530)
.+-|.+..+|.. .+.-+.-..+..+++|+--.|..... .+++|.+++....-..+..-++.++.. ++
T Consensus 218 -----~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKK-----Lieplt~li~sT~AmSLlYECvNTVVa~s~s 287 (877)
T KOG1059|consen 218 -----QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKK-----LIEPITELMESTVAMSLLYECVNTVVAVSMS 287 (877)
T ss_pred -----cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhh-----hhhHHHHHHHhhHHHHHHHHHHHHheeehhc
Confidence 335777887754 44445566788888888666654443 688999999443344444444444432 22
Q ss_pred cCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHh
Q 009636 231 RGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG 310 (530)
Q Consensus 231 ~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~ 310 (530)
.+ .........-++..|-.++.++|+.+..-.+.+++.+....+..++. .-+.++.+|.+.+++++..|+..+-
T Consensus 288 ~g-~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~DkD~SIRlrALdLl~ 361 (877)
T KOG1059|consen 288 SG-MSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDKDESIRLRALDLLY 361 (877)
T ss_pred cC-CCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccCCchhHHHHHHHHH
Confidence 22 12334455677888888999999999999999999998777665442 3467899999999999999999988
Q ss_pred Hhhc
Q 009636 311 NIVT 314 (530)
Q Consensus 311 nl~~ 314 (530)
-++.
T Consensus 362 gmVs 365 (877)
T KOG1059|consen 362 GMVS 365 (877)
T ss_pred HHhh
Confidence 7775
No 54
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.04 E-value=1.3e-08 Score=97.56 Aligned_cols=224 Identities=18% Similarity=0.226 Sum_probs=166.8
Q ss_pred CCChhHHHHHHHHHHHhccCChHHHHHHHH------hCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcC
Q 009636 254 SNDDEVLTDACWALSYLSDGTNDKIQAVIE------AGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQ 327 (530)
Q Consensus 254 ~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~------~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~ 327 (530)
+.++++..+++..+..+....+...+.+.. ......++.++.++++.+...|+.+++.++...+....... .+
T Consensus 68 ~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~~ 146 (312)
T PF03224_consen 68 SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV-KE 146 (312)
T ss_dssp ---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH-HH
T ss_pred cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchH-HH
Confidence 468899999999999998877766665554 23678888899999999999999999999987665543322 45
Q ss_pred chHHHHHhhcCCC---chhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHH------hc-CchhHHHHHHHHHHHh
Q 009636 328 ALPCLLNLLSGNY---KKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALL------EN-AEFDIKKEAAWAISNA 397 (530)
Q Consensus 328 ~l~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll------~~-~~~~v~~~a~~aL~nl 397 (530)
.++.++.++.+.- +..++..|+.+|.++.. .+..+..+++.++++.+..++ .+ .+..++.+++.++.-+
T Consensus 147 ~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlL 225 (312)
T PF03224_consen 147 ALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLL 225 (312)
T ss_dssp HHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHH
Confidence 6677777776421 55677899999999975 478888899999999999999 22 2678999999999999
Q ss_pred hcCCCHHHHHHHHHcCChHHHHhccC-CCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhc
Q 009636 398 TSGGTHEQIKFLVIQGCIKPLCDLLV-CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQT 476 (530)
Q Consensus 398 ~~~~~~~~~~~l~~~~~i~~L~~lL~-~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~ 476 (530)
+. +++....+...++++.|+++++ ....+++..++.++.|++...+.. +...+-.+|++..+..|+.
T Consensus 226 SF--~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~----------~~~~mv~~~~l~~l~~L~~ 293 (312)
T PF03224_consen 226 SF--EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKS----------NIELMVLCGLLKTLQNLSE 293 (312)
T ss_dssp TT--SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTT----------HHHHHHHH-HHHHHHHHHS
T ss_pred hc--CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHH----------HHHHHHHccHHHHHHHHhc
Confidence 99 6688899999999999999987 456789999999999999776542 4677778999999999965
Q ss_pred --CCCHHHHHHHHHHHH
Q 009636 477 --HDNAEIYEKSVKLLE 491 (530)
Q Consensus 477 --~~~~~v~~~a~~il~ 491 (530)
..|+|+.+.-..+-+
T Consensus 294 rk~~Dedl~edl~~L~e 310 (312)
T PF03224_consen 294 RKWSDEDLTEDLEFLKE 310 (312)
T ss_dssp S--SSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 489999887766654
No 55
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=2.2e-08 Score=92.48 Aligned_cols=184 Identities=16% Similarity=0.191 Sum_probs=154.6
Q ss_pred CHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHh
Q 009636 130 YPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQ 209 (530)
Q Consensus 130 ~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~l 209 (530)
+++-+..|+.-|-.++. +-++...++..|++..++.++.+.+..+|+.|+|+|+..+..+|..+..+++.|++..|+..
T Consensus 96 ~le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ 174 (342)
T KOG2160|consen 96 DLEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI 174 (342)
T ss_pred CHHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence 47788889988988888 67788888999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCchhHHHHHHHHhhhhccCCCCC-ChhhhhchHHHHHHhhcC--CChhHHHHHHHHHHHhccCChHHHHHHHHhCc
Q 009636 210 LNGQPKLSMLRNATWTLSNFCRGKPQP-PFDQVSPALPALAHLIHS--NDDEVLTDACWALSYLSDGTNDKIQAVIEAGV 286 (530)
Q Consensus 210 l~~~~~~~~~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~ll~~--~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~ 286 (530)
+..+.+...+..|+++++.+.++.+.. ......+....|...+++ .+...+..++..+.++..........+...++
T Consensus 175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f 254 (342)
T KOG2160|consen 175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF 254 (342)
T ss_pred HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence 977778888999999999999998443 334445568899999998 56778888999999998776655555666677
Q ss_pred HHHHHHhhCCCCchhHHHHHHHHhHhhc
Q 009636 287 FPRLAEFLMHPSPSVLIPALRTVGNIVT 314 (530)
Q Consensus 287 l~~L~~lL~~~~~~~~~~al~~L~nl~~ 314 (530)
...+..+....+..+...++.++..+..
T Consensus 255 ~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 255 QRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred hHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 7777777777888888888877766654
No 56
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=1.9e-06 Score=86.71 Aligned_cols=322 Identities=16% Similarity=0.159 Sum_probs=233.2
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHhhhCCCc---
Q 009636 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSP--- 191 (530)
Q Consensus 117 ~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~i~~~a~~~L~nl~~~~~--- 191 (530)
.|+.|++-+.+..-++-|..|++.|-.++. +.+..+... +++.|++.|.. .++++...++.++.++....+
T Consensus 23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~-Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~ 98 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQ-GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE 98 (970)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHc-ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence 588899888776657789999999999887 556556554 48889999976 678999999999999985442
Q ss_pred ---h----------hhh-hHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCCh---hhhhchHHHHHHhhcC
Q 009636 192 ---R----------CRD-LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF---DQVSPALPALAHLIHS 254 (530)
Q Consensus 192 ---~----------~~~-~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~---~~~~~~l~~L~~ll~~ 254 (530)
. +.+ .+...+.+..++..+ ...|-.++.+++..+.++....|.... .....++..|+.+|..
T Consensus 99 v~dds~qsdd~g~~iae~fik~qd~I~lll~~~-e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D 177 (970)
T KOG0946|consen 99 VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSL-EEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD 177 (970)
T ss_pred hcccchhhhHHHHHHHHHHHcCchhHHHHHHHH-HhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh
Confidence 1 111 233456777888888 778899999999999999887654322 3346778899999998
Q ss_pred CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC----CchhHHHHHHHHhHhhcCCchhhHHHhhcCchH
Q 009636 255 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP----SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALP 330 (530)
Q Consensus 255 ~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~----~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~ 330 (530)
.-+.|+-.++..|..++..+....+.+.=..++..|+.++... ..-+...|+..|.||...+....+.+.+.+.+|
T Consensus 178 srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~ 257 (970)
T KOG0946|consen 178 SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIP 257 (970)
T ss_pred hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHH
Confidence 8899999999999999988877666666668999999999763 235788899999999998888888888999999
Q ss_pred HHHHhhcCCC--c--------hhH--HHHHHHHHHHHhc-CCH----HHH-HHHHHhCcHHHHHHHHhcC--chhHHHHH
Q 009636 331 CLLNLLSGNY--K--------KSI--KKEACWTVSNITA-GNR----EQI-QAVIEANIIGPLVALLENA--EFDIKKEA 390 (530)
Q Consensus 331 ~L~~lL~~~~--~--------~~v--~~~a~~~L~nl~~-~~~----~~~-~~l~~~~~i~~L~~ll~~~--~~~v~~~a 390 (530)
.|.++|.... + ..+ ...+..++.-+.. ++. .+. ..+...+++..|+.++.++ ..+|+.++
T Consensus 258 rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltes 337 (970)
T KOG0946|consen 258 RLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTES 337 (970)
T ss_pred HHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHH
Confidence 9998875421 2 111 1345555666655 322 223 3455788999999988776 57899999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHcCC---------h-HHHHhccCC-CChHHHHHHHHHHHHHHHhh
Q 009636 391 AWAISNATSGGTHEQIKFLVIQGC---------I-KPLCDLLVC-PDPRIVTVCLEGLENILKVG 444 (530)
Q Consensus 391 ~~aL~nl~~~~~~~~~~~l~~~~~---------i-~~L~~lL~~-~~~~~~~~al~~l~~ll~~~ 444 (530)
..++.+++.+.. ..-..+.+-.+ + -.+..+..+ ..+..+..++.++..++-..
T Consensus 338 iitvAevVRgn~-~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN 401 (970)
T KOG0946|consen 338 IITVAEVVRGNA-RNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDN 401 (970)
T ss_pred HHHHHHHHHhch-HHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcc
Confidence 999999998753 33333332211 1 122333333 44567777777777766443
No 57
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.96 E-value=3.1e-08 Score=94.90 Aligned_cols=218 Identities=18% Similarity=0.221 Sum_probs=157.1
Q ss_pred CCCHHHHHHHHHHHHhhhCCCchhhhhHhh------cCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhc
Q 009636 170 SPSDDVREQAVWALGNIAGDSPRCRDLVLS------QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSP 243 (530)
Q Consensus 170 ~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~------~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~ 243 (530)
+++.++...++..+..+..+.+...+.+.. .....++++++ ..+|..+...++.++..+....+........+
T Consensus 68 ~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll-~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~ 146 (312)
T PF03224_consen 68 SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLL-DRNDSFIQLKAAFILTSLLSQGPKRSEKLVKE 146 (312)
T ss_dssp ---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH--S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHh-cCCCHHHHHHHHHHHHHHHHcCCccccchHHH
Confidence 467889999999999999888866666554 23678889977 77799999999999999998876666554456
Q ss_pred hHHHHHHhhcC----CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhh-----CC--CCchhHHHHHHHHhHh
Q 009636 244 ALPALAHLIHS----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL-----MH--PSPSVLIPALRTVGNI 312 (530)
Q Consensus 244 ~l~~L~~ll~~----~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL-----~~--~~~~~~~~al~~L~nl 312 (530)
.++.++..+.+ ++.+++..++.++.++..... ....+.+.++++.+..++ .+ ....++..++.+++-+
T Consensus 147 ~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~-~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlL 225 (312)
T PF03224_consen 147 ALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKE-YRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLL 225 (312)
T ss_dssp HHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHH-HHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcch-hHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHH
Confidence 66777766654 456677889999999986554 556688889999999999 22 3456888999999988
Q ss_pred hcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH-HHHHHHHhCcHHHHHHHHhcC--chhHHHH
Q 009636 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE-QIQAVIEANIIGPLVALLENA--EFDIKKE 389 (530)
Q Consensus 313 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~~~i~~L~~ll~~~--~~~v~~~ 389 (530)
+. ++.....+.+.++++.|..+++......|.+-+..++.|++...++ ....++..|+++.+-.+.... |+++...
T Consensus 226 SF-~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~ed 304 (312)
T PF03224_consen 226 SF-EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDEDLTED 304 (312)
T ss_dssp TT-SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHHH
T ss_pred hc-CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHHH
Confidence 86 6666677888889999999998876889999999999999985443 677777877777766655433 6666654
Q ss_pred H
Q 009636 390 A 390 (530)
Q Consensus 390 a 390 (530)
.
T Consensus 305 l 305 (312)
T PF03224_consen 305 L 305 (312)
T ss_dssp H
T ss_pred H
Confidence 3
No 58
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.93 E-value=1e-07 Score=98.27 Aligned_cols=271 Identities=19% Similarity=0.225 Sum_probs=207.7
Q ss_pred hHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH
Q 009636 87 SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK 166 (530)
Q Consensus 87 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ 166 (530)
-+.|+.|...-....+.++.|+.+ +|.+++.|-++ --+..|+..|+.+..-.+-....-..-|++|++++
T Consensus 450 FteQLTAFevWLd~gse~r~PPeQ-------LPiVLQVLLSQ---vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLK 519 (1387)
T KOG1517|consen 450 FTEQLTAFEVWLDYGSESRTPPEQ-------LPIVLQVLLSQ---VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLK 519 (1387)
T ss_pred HHHHHHHHHHHHHhccccCCChHh-------cchHHHHHHHH---HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHH
Confidence 356677777777777776666655 56667666543 34777999999998877888888888899999999
Q ss_pred hhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCC--chhHHHHHHHHhhhhccCCCCCChh-hhhc
Q 009636 167 LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP--KLSMLRNATWTLSNFCRGKPQPPFD-QVSP 243 (530)
Q Consensus 167 ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~--~~~~~~~a~~~L~~L~~~~~~~~~~-~~~~ 243 (530)
+|+++-.+++..-+.+...|..-++.|+..+++.++-..++..+..+. +++-+..++++|+.++++.+..... ...+
T Consensus 520 LLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~ 599 (1387)
T KOG1517|consen 520 LLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGN 599 (1387)
T ss_pred HhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhcccc
Confidence 999999999999988888888777889988888888888888884322 5678889999999999987444433 3466
Q ss_pred hHHHHHHhhcCC-ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcC----Cch
Q 009636 244 ALPALAHLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG----DDM 318 (530)
Q Consensus 244 ~l~~L~~ll~~~-d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~----~~~ 318 (530)
++..++..+.++ .+-++..+|-+|+.|-.+.+...-.-...+..+.|..+|.++-+.+|..|+.+|+.+..+ .++
T Consensus 600 li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde 679 (1387)
T KOG1517|consen 600 LIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDE 679 (1387)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccch
Confidence 777888888875 688899999999999887765544455668889999999999999999999999999875 333
Q ss_pred hhHHH------------hhcCch---HHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009636 319 QTQCV------------IEYQAL---PCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIE 368 (530)
Q Consensus 319 ~~~~~------------~~~~~l---~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 368 (530)
+...+ ++..+. -.++.+++.+ .+-++.+.+-+|+.++.+...+...+.-
T Consensus 680 ~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdg-splvr~ev~v~ls~~~~g~~~~~~~va~ 743 (1387)
T KOG1517|consen 680 QTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDG-SPLVRTEVVVALSHFVVGYVSHLKVVAG 743 (1387)
T ss_pred hhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhcc-chHHHHHHHHHHHHHHHhhHHHhHHHhh
Confidence 33222 222222 2566777888 8999999999999998876666554443
No 59
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.91 E-value=2e-07 Score=90.21 Aligned_cols=360 Identities=13% Similarity=0.079 Sum_probs=216.0
Q ss_pred CCHHHHHHhhc----CCCh-HHHHHHHHHHHHhhcCCCCCcHHHHHHcC-CHHHH-HHhhcCCCCHHHHHHHHHHHHHHh
Q 009636 73 ENLPVMVAGVW----SNDS-GVQYECTTQFRKLLSIERSPPIEEVIRSG-VVPRF-VEFLLREDYPQLQFEAAWALTNIA 145 (530)
Q Consensus 73 ~~l~~l~~~l~----s~~~-~~~~~a~~~l~~l~~~~~~~~~~~~~~~g-~v~~L-v~ll~~~~~~~i~~~a~~~L~~l~ 145 (530)
+.+|.+.+.+. .+.| .....++..+..++... .| -..+-.++ ++-.+ ..-++.+.+..+|..|+.+|.+-+
T Consensus 129 ~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~-~P-e~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl 206 (858)
T COG5215 129 SLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESE-AP-EDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSL 206 (858)
T ss_pred ccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhcc-CH-HHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHH
Confidence 35555555443 3443 46778888888876553 23 22222222 23333 334455555789999999998733
Q ss_pred cCChhhHHHHHh----CCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHH
Q 009636 146 SGTSEHTKVVID----HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRN 221 (530)
Q Consensus 146 ~~~~~~~~~~~~----~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~ 221 (530)
.. .+..+.. +-+++..+..-+.++.+++..+..+|..|..-...+-+..++. .+-.+.....++++.++...
T Consensus 207 ~f---v~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~-aL~alt~~~mks~nd~va~q 282 (858)
T COG5215 207 MF---VQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMEN-ALAALTGRFMKSQNDEVAIQ 282 (858)
T ss_pred HH---HHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCcchHHHHH
Confidence 21 1111111 2344555666677899999999999998864333333333333 23333322237889999999
Q ss_pred HHHHhhhhccCCCCCC-----------------hhhhhchHHHHHHhhcCC-------ChhHHHHHHHHHHHhccCChHH
Q 009636 222 ATWTLSNFCRGKPQPP-----------------FDQVSPALPALAHLIHSN-------DDEVLTDACWALSYLSDGTNDK 277 (530)
Q Consensus 222 a~~~L~~L~~~~~~~~-----------------~~~~~~~l~~L~~ll~~~-------d~~v~~~a~~~l~~l~~~~~~~ 277 (530)
+....+.+|....... ......++|.|+++|... |..+...+..||--.+....+
T Consensus 283 avEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd- 361 (858)
T COG5215 283 AVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD- 361 (858)
T ss_pred HHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh-
Confidence 9999988887642111 112356899999999753 223444455555444332222
Q ss_pred HHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009636 278 IQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (530)
Q Consensus 278 ~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 357 (530)
.++. .++..+-+-+.+++|.-++.+..++|.+..+.......-+-...+|.+...+.++ .--++..++|+++.++.
T Consensus 362 --~i~~-pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~-~l~vk~ttAwc~g~iad 437 (858)
T COG5215 362 --KIMR-PVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDS-CLWVKSTTAWCFGAIAD 437 (858)
T ss_pred --HhHH-HHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccc-eeehhhHHHHHHHHHHH
Confidence 1222 2455555667888999999999999999998876655555667899999999877 88899999999999986
Q ss_pred CCHHHHHHHHHhCcHHHHHHHHh---cCchhHHHHHHHHHHHhhcCCCHHHH--HHHHHc---CChHHHHhcc--CCCCh
Q 009636 358 GNREQIQAVIEANIIGPLVALLE---NAEFDIKKEAAWAISNATSGGTHEQI--KFLVIQ---GCIKPLCDLL--VCPDP 427 (530)
Q Consensus 358 ~~~~~~~~l~~~~~i~~L~~ll~---~~~~~v~~~a~~aL~nl~~~~~~~~~--~~l~~~---~~i~~L~~lL--~~~~~ 427 (530)
+-+..+.. .|-++..+.... .+.+.+...++|...|++.+-.+... ..++-. .++..|+..- ...+.
T Consensus 438 ~va~~i~p---~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~ 514 (858)
T COG5215 438 HVAMIISP---CGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNES 514 (858)
T ss_pred HHHHhcCc---cccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccch
Confidence 54433222 222222222211 13578889999999999875422110 111111 1122222211 14556
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 009636 428 RIVTVCLEGLENILKVGEA 446 (530)
Q Consensus 428 ~~~~~al~~l~~ll~~~~~ 446 (530)
..+.....+|+.++.+++.
T Consensus 515 n~R~s~fsaLgtli~~~~d 533 (858)
T COG5215 515 NLRVSLFSALGTLILICPD 533 (858)
T ss_pred hHHHHHHHHHHHHHhhcch
Confidence 6777888888888876654
No 60
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=1e-06 Score=88.92 Aligned_cols=296 Identities=15% Similarity=0.162 Sum_probs=171.5
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 009636 76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV 155 (530)
Q Consensus 76 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~ 155 (530)
..+.+-|++++.-++-.|+.++.++.+. +.+. .+.|.+.+++++.+ +.++..|+.|...+....++....+
T Consensus 110 NslknDL~s~nq~vVglAL~alg~i~s~---Emar-----dlapeVe~Ll~~~~-~~irKKA~Lca~r~irK~P~l~e~f 180 (866)
T KOG1062|consen 110 NSLKNDLNSSNQYVVGLALCALGNICSP---EMAR-----DLAPEVERLLQHRD-PYIRKKAALCAVRFIRKVPDLVEHF 180 (866)
T ss_pred HHHHhhccCCCeeehHHHHHHhhccCCH---HHhH-----HhhHHHHHHHhCCC-HHHHHHHHHHHHHHHHcCchHHHHh
Confidence 3444455677777777888888877654 2222 24677778888877 8888888888888777666554444
Q ss_pred H--------h--CCC----hHHHHHhhCCCC------HHHHHHHHHHHHhhhCCC--ch-----hhhhHhhcCChHHHHH
Q 009636 156 I--------D--HGA----VPIFVKLLYSPS------DDVREQAVWALGNIAGDS--PR-----CRDLVLSQGGLVPLLA 208 (530)
Q Consensus 156 ~--------~--~g~----i~~L~~ll~~~~------~~i~~~a~~~L~nl~~~~--~~-----~~~~i~~~~~i~~Ll~ 208 (530)
+ + .|+ +..+..+++... ..+...-+..|.++.... ++ ..+.++.-. +-.+++
T Consensus 181 ~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~-iLrlLr 259 (866)
T KOG1062|consen 181 VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIR-ILRLLR 259 (866)
T ss_pred hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHH-HHHHHH
Confidence 2 1 333 333444443311 234455556666665332 11 111111111 112334
Q ss_pred hhcCCCchhHHHHHHHHhhhhccCCCCCC---hhhh-----------------hchHHHHHHhhcCCChhHHHHHHHHHH
Q 009636 209 QLNGQPKLSMLRNATWTLSNFCRGKPQPP---FDQV-----------------SPALPALAHLIHSNDDEVLTDACWALS 268 (530)
Q Consensus 209 ll~~~~~~~~~~~a~~~L~~L~~~~~~~~---~~~~-----------------~~~l~~L~~ll~~~d~~v~~~a~~~l~ 268 (530)
+| ...|.+.-..-...|..++++..... .... .-++.+|-++|.+.|..++.-++..|.
T Consensus 260 iL-Gq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~ 338 (866)
T KOG1062|consen 260 IL-GQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLL 338 (866)
T ss_pred Hh-cCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHH
Confidence 44 44556666666666666666542111 1111 223445556666666666666666666
Q ss_pred HhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHH
Q 009636 269 YLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEA 348 (530)
Q Consensus 269 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a 348 (530)
.+...++...+.. =..++.+|++.+..++..|+..+-.|...+. .. ..+..|+.+|... +++++...
T Consensus 339 r~V~~d~~avqrH-----r~tIleCL~DpD~SIkrralELs~~lvn~~N--v~-----~mv~eLl~fL~~~-d~~~k~~~ 405 (866)
T KOG1062|consen 339 RVVQQDPTAVQRH-----RSTILECLKDPDVSIKRRALELSYALVNESN--VR-----VMVKELLEFLESS-DEDFKADI 405 (866)
T ss_pred hhhcCCcHHHHHH-----HHHHHHHhcCCcHHHHHHHHHHHHHHhcccc--HH-----HHHHHHHHHHHhc-cHHHHHHH
Confidence 6665555433322 2468889999999999999999988885433 22 2356788889888 89999998
Q ss_pred HHHHHHHhc-CCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCC
Q 009636 349 CWTVSNITA-GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG 401 (530)
Q Consensus 349 ~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 401 (530)
+.-+..++. ..|+.... |..+.+.+...-.-|+..+...+..++..+
T Consensus 406 as~I~~laEkfaP~k~W~------idtml~Vl~~aG~~V~~dv~~nll~LIa~~ 453 (866)
T KOG1062|consen 406 ASKIAELAEKFAPDKRWH------IDTMLKVLKTAGDFVNDDVVNNLLRLIANA 453 (866)
T ss_pred HHHHHHHHHhcCCcchhH------HHHHHHHHHhcccccchhhHHHHHHHHhcC
Confidence 888888876 34443322 344555555443445555555555555444
No 61
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.89 E-value=1.1e-08 Score=99.53 Aligned_cols=266 Identities=17% Similarity=0.143 Sum_probs=179.8
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchh--hhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCC
Q 009636 159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC--RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP 236 (530)
Q Consensus 159 g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~--~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~ 236 (530)
-++..++.+|+++.+.++.+|+.+.+.|+.--..| ...+...|. .|..-+ ....+++.-..+.+++.+.......
T Consensus 604 ~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~l-ge~ypEvLgsil~Ai~~I~sv~~~~ 680 (975)
T COG5181 604 MIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENL-GEDYPEVLGSILKAICSIYSVHRFR 680 (975)
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhc-CcccHHHHHHHHHHHHHHhhhhccc
Confidence 35677888999999999999999888876211111 122233332 244555 6677888888777777666543211
Q ss_pred -ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcC
Q 009636 237 -PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG 315 (530)
Q Consensus 237 -~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~ 315 (530)
-..-..+++|.|...|++....+..+.+..++.++...++.+..---..+.--|+..|.+.+..++..|..++|.|+..
T Consensus 681 ~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~a 760 (975)
T COG5181 681 SMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRA 760 (975)
T ss_pred ccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhh
Confidence 1223578999999999999999999999999999977765433222234555678888888999999999999999852
Q ss_pred CchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHH
Q 009636 316 DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAIS 395 (530)
Q Consensus 316 ~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~ 395 (530)
+-...++..|+.-|+.. +...|.-...+++-.+..+.. ..++|.|+.=...++..||.-.+.+++
T Consensus 761 -------iGPqdvL~~LlnnLkvq-eRq~RvctsvaI~iVae~cgp-------fsVlP~lm~dY~TPe~nVQnGvLkam~ 825 (975)
T COG5181 761 -------IGPQDVLDILLNNLKVQ-ERQQRVCTSVAISIVAEYCGP-------FSVLPTLMSDYETPEANVQNGVLKAMC 825 (975)
T ss_pred -------cCHHHHHHHHHhcchHH-HHHhhhhhhhhhhhhHhhcCc-------hhhHHHHHhcccCchhHHHHhHHHHHH
Confidence 22334566666666655 444444444444444332111 246777777777778899999999999
Q ss_pred HhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhh
Q 009636 396 NATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG 444 (530)
Q Consensus 396 nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~ 444 (530)
.+.........+++. -+.+.|-+.|.+.|+.-+..+...+..+.-.+
T Consensus 826 fmFeyig~~s~dYvy--~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc 872 (975)
T COG5181 826 FMFEYIGQASLDYVY--SITPLLEDALTDRDPVHRQTAMNVIRHLVLNC 872 (975)
T ss_pred HHHHHHHHHHHHHHH--HhhHHHHhhhcccchHHHHHHHHHHHHHhcCC
Confidence 987754434444443 24566777888889988888888888776544
No 62
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=5.3e-06 Score=85.87 Aligned_cols=330 Identities=16% Similarity=0.174 Sum_probs=223.5
Q ss_pred HHHHHHHHHHHHhhcCCCCCcHHHHH-----HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChH
Q 009636 88 GVQYECTTQFRKLLSIERSPPIEEVI-----RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVP 162 (530)
Q Consensus 88 ~~~~~a~~~l~~l~~~~~~~~~~~~~-----~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~ 162 (530)
+-...++.+|+++++. +|....+. --|..+.+..++.....+.++..|+.++..++. +.++...+...|.+.
T Consensus 1740 ~~v~m~LtAL~Nli~~--nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~ 1816 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSA--NPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLT 1816 (2235)
T ss_pred HHHHHHHHHHHHHHhh--CcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHH
Confidence 3455799999999987 44333222 237788888888766558999999999888877 889999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC-CCC-Chhh
Q 009636 163 IFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQP-PFDQ 240 (530)
Q Consensus 163 ~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~-~~~-~~~~ 240 (530)
.|+.+|.+. +..++.++.+|..+++... .....++.|++..++.++..+...+.+..+...+..+..++ ..+ ....
T Consensus 1817 ~LL~lLHS~-PS~R~~vL~vLYAL~S~~~-i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~IT 1894 (2235)
T KOG1789|consen 1817 TLLTLLHSQ-PSMRARVLDVLYALSSNGQ-IGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTIT 1894 (2235)
T ss_pred HHHHHHhcC-hHHHHHHHHHHHHHhcCcH-HHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeee
Confidence 999999764 6789999999999976654 66677889999999998878888999999999999998876 111 1111
Q ss_pred hhchH------------HHHHHhhcC--CChhH------HHHHHHHHHHhcc--------CCh------HH---------
Q 009636 241 VSPAL------------PALAHLIHS--NDDEV------LTDACWALSYLSD--------GTN------DK--------- 277 (530)
Q Consensus 241 ~~~~l------------~~L~~ll~~--~d~~v------~~~a~~~l~~l~~--------~~~------~~--------- 277 (530)
...++ ...++.++. +++++ +......+..+.. ++. +.
T Consensus 1895 L~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~ 1974 (2235)
T KOG1789|consen 1895 LIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADK 1974 (2235)
T ss_pred hHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhcc
Confidence 22222 233344432 22322 1112222222210 000 00
Q ss_pred --------HHHH-H------------HhCcHHHHHHhhCCCCch--hHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHH
Q 009636 278 --------IQAV-I------------EAGVFPRLAEFLMHPSPS--VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLN 334 (530)
Q Consensus 278 --------~~~~-~------------~~~~l~~L~~lL~~~~~~--~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~ 334 (530)
...+ . -.++++.+.+++...++. .......++-.+.+..+...+.+-..|.+|.++.
T Consensus 1975 E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~ 2054 (2235)
T KOG1789|consen 1975 ECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCT 2054 (2235)
T ss_pred CcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHH
Confidence 0000 0 014556666666654432 2222334445556667777777777899999999
Q ss_pred hhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCC
Q 009636 335 LLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGC 414 (530)
Q Consensus 335 lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~ 414 (530)
.+... ...+-+.|..+|..++.. .-....+.....+..++..+... +..-.-|+.+|..+......+.....+..|.
T Consensus 2055 Am~~~-n~s~P~SaiRVlH~Lsen-~~C~~AMA~l~~i~~~m~~mkK~-~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gL 2131 (2235)
T KOG1789|consen 2055 AMCLQ-NTSAPRSAIRVLHELSEN-QFCCDAMAQLPCIDGIMKSMKKQ-PSLMGLAAEALKRLMKRNTGELVAQMLKCGL 2131 (2235)
T ss_pred HHHhc-CCcCcHHHHHHHHHHhhc-cHHHHHHhccccchhhHHHHHhc-chHHHHHHHHHHHHHHHhHHHHHHHHhccCc
Confidence 99887 666778899999999764 35566666666677777776643 3455588999999988766677777788899
Q ss_pred hHHHHhccCCC
Q 009636 415 IKPLCDLLVCP 425 (530)
Q Consensus 415 i~~L~~lL~~~ 425 (530)
++.|+.+|++.
T Consensus 2132 vpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2132 VPYLLQLLDSS 2142 (2235)
T ss_pred HHHHHHHhccc
Confidence 99999999753
No 63
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=2.6e-06 Score=86.12 Aligned_cols=342 Identities=17% Similarity=0.172 Sum_probs=230.7
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009636 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (530)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (530)
..++.+++.....|-+.....--.+.+.+... |... .++++.+++=..+++ +.++..|++.++.+.- +...
T Consensus 49 slF~dvvk~~~T~dlelKKlvyLYl~nYa~~~--P~~a----~~avnt~~kD~~d~n-p~iR~lAlrtm~~l~v--~~i~ 119 (734)
T KOG1061|consen 49 SLFPDVVKCMQTRDLELKKLVYLYLMNYAKGK--PDLA----ILAVNTFLKDCEDPN-PLIRALALRTMGCLRV--DKIT 119 (734)
T ss_pred hhhHHHHhhcccCCchHHHHHHHHHHHhhccC--chHH----HhhhhhhhccCCCCC-HHHHHHHhhceeeEee--hHHH
Confidence 46799999999999888877777788777653 3322 245777777667777 9999999988877665 2222
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009636 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (530)
Q Consensus 153 ~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~ 232 (530)
. .+...+...+++.++.++..++.+..++-..++ +.+...|++..|-.++ .+.++.+..+|+.+|..+...
T Consensus 120 e-----y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~---~~~~~~gl~~~L~~ll-~D~~p~VVAnAlaaL~eI~e~ 190 (734)
T KOG1061|consen 120 E-----YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP---DLVEDSGLVDALKDLL-SDSNPMVVANALAALSEIHES 190 (734)
T ss_pred H-----HHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh---hhccccchhHHHHHHh-cCCCchHHHHHHHHHHHHHHh
Confidence 2 235778899999999999999999888865543 4677889999999999 688999999999999999988
Q ss_pred CCC-CChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhH
Q 009636 233 KPQ-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311 (530)
Q Consensus 233 ~~~-~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~n 311 (530)
.+. .........+..++..+...++.-+..++.++.+-.-.++.... .++.++...|.+.+..+...+...+..
T Consensus 191 ~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~-----~i~~r~~p~Lqh~n~avvlsavKv~l~ 265 (734)
T KOG1061|consen 191 HPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAE-----DICERLTPRLQHANSAVVLSAVKVILQ 265 (734)
T ss_pred CCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHH-----HHHHHhhhhhccCCcceEeehHHHHHH
Confidence 754 33344455555566666555666666666666555443332222 456778888888888888888888777
Q ss_pred hhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHH-------------------------HH
Q 009636 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQ-------------------------AV 366 (530)
Q Consensus 312 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~-------------------------~l 366 (530)
+........ ..+-..+-+.++.++... . +++..|..-+.-+....+.... .+
T Consensus 266 ~~~~~~~~~-~~~~~K~~~pl~tlls~~-~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~l 342 (734)
T KOG1061|consen 266 LVKYLKQVN-ELLFKKVAPPLVTLLSSE-S-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIEL 342 (734)
T ss_pred HHHHHHHHH-HHHHHHhcccceeeeccc-c-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHH
Confidence 765444322 222234555666666654 3 4444444433333332222110 00
Q ss_pred H-HhC---cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHH
Q 009636 367 I-EAN---IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILK 442 (530)
Q Consensus 367 ~-~~~---~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~ 442 (530)
. +.+ ++..|......-|.+.-+++.+|+++++..... .++++..|++++..+-..++..++..+..++.
T Consensus 343 a~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~-------~~~cv~~lLell~~~~~yvvqE~~vvi~dilR 415 (734)
T KOG1061|consen 343 ANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQ-------SNDCVSILLELLETKVDYVVQEAIVVIRDILR 415 (734)
T ss_pred hhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhh-------hhhhHHHHHHHHhhcccceeeehhHHHHhhhh
Confidence 1 111 333444444445888999999999999885321 16789999999997777777778888899988
Q ss_pred hhhhh
Q 009636 443 VGEAE 447 (530)
Q Consensus 443 ~~~~~ 447 (530)
..++.
T Consensus 416 kyP~~ 420 (734)
T KOG1061|consen 416 KYPNK 420 (734)
T ss_pred cCCCc
Confidence 87764
No 64
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.80 E-value=4e-06 Score=81.51 Aligned_cols=349 Identities=12% Similarity=0.029 Sum_probs=211.1
Q ss_pred HHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHH-
Q 009636 78 MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVI- 156 (530)
Q Consensus 78 l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~- 156 (530)
.+..|.+..|..-..|+..+..++..+ -|+-.+ .|++..++.....+.....+.+++.++++++..... +.++
T Consensus 99 al~aL~s~epr~~~~Aaql~aaIA~~E-lp~~~w---p~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~P--e~li~ 172 (858)
T COG5215 99 ALRALKSPEPRFCTMAAQLLAAIARME-LPNSLW---PGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAP--EDLIQ 172 (858)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHHHhh-Cccccc---hHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCH--HHHHH
Confidence 345677888888888888888877654 333222 345556666665555468899999999999984322 2222
Q ss_pred h-CCChHHHHHhh-CC-CCHHHHHHHHHHHHhhhCCCchhhhhHhhcC----ChHHHHHhhcCCCchhHHHHHHHHhhhh
Q 009636 157 D-HGAVPIFVKLL-YS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQG----GLVPLLAQLNGQPKLSMLRNATWTLSNF 229 (530)
Q Consensus 157 ~-~g~i~~L~~ll-~~-~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~----~i~~Ll~ll~~~~~~~~~~~a~~~L~~L 229 (530)
. +.++-.++..- +. ++..+|-.++.+|.+-+.. .+..+-..+ +++..+..- +.++.+++..+..||..+
T Consensus 173 ~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~f---v~~nf~~E~erNy~mqvvceat-q~~d~e~q~aafgCl~ki 248 (858)
T COG5215 173 MSNVILFAIVMGALKNETTSAVRLAALKALMDSLMF---VQGNFCYEEERNYFMQVVCEAT-QGNDEELQHAAFGCLNKI 248 (858)
T ss_pred HhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHH---HHHhhcchhhhchhheeeehhc-cCCcHHHHHHHHHHHHHH
Confidence 2 23344444443 33 6678899999988873211 111111111 223333333 678999999999999887
Q ss_pred ccCC-CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHH---H-------------HHHHhCcHHHHHH
Q 009636 230 CRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKI---Q-------------AVIEAGVFPRLAE 292 (530)
Q Consensus 230 ~~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~---~-------------~~~~~~~l~~L~~ 292 (530)
..-. ...+..+...+.......+.++++++...+...-+.++....+.. + .-.-.+++|.|++
T Consensus 249 m~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~ 328 (858)
T COG5215 249 MMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLS 328 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHH
Confidence 6543 222222333344455677888888888777666655553321110 0 0011257899999
Q ss_pred hhCC-------CCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH-HHH
Q 009636 293 FLMH-------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE-QIQ 364 (530)
Q Consensus 293 lL~~-------~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~-~~~ 364 (530)
+|.. ++|.+-..|..||--.+..... .+++ .++..+-.-+.++ +..-|+.|..+++.+..+..+ +..
T Consensus 329 LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd---~i~~-pVl~FvEqni~~~-~w~nreaavmAfGSvm~gp~~~~lT 403 (858)
T COG5215 329 LLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD---KIMR-PVLGFVEQNIRSE-SWANREAAVMAFGSVMHGPCEDCLT 403 (858)
T ss_pred HHHhcCCCccccccchhhhHHHHHHHHHHHhhh---HhHH-HHHHHHHHhccCc-hhhhHHHHHHHhhhhhcCccHHHHH
Confidence 9975 3566777776666555542221 2222 2455555666777 788899999999999886444 444
Q ss_pred HHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHh-ccC--CCChHHHHHHHHHHHHHH
Q 009636 365 AVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCD-LLV--CPDPRIVTVCLEGLENIL 441 (530)
Q Consensus 365 ~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~-lL~--~~~~~~~~~al~~l~~ll 441 (530)
+++ ...+|.+...+.++...++..++|+++.++.+- ...+-..|-+...+. ++. ...|.+..++.|...++.
T Consensus 404 ~~V-~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~v----a~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv 478 (858)
T COG5215 404 KIV-PQALPGIENEMSDSCLWVKSTTAWCFGAIADHV----AMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLV 478 (858)
T ss_pred hhH-HhhhHHHHHhcccceeehhhHHHHHHHHHHHHH----HHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHH
Confidence 444 367888888888888899999999999998632 111111122222111 111 345677778888888887
Q ss_pred Hhhhh
Q 009636 442 KVGEA 446 (530)
Q Consensus 442 ~~~~~ 446 (530)
....+
T Consensus 479 ~h~a~ 483 (858)
T COG5215 479 DHIAK 483 (858)
T ss_pred Hhhhh
Confidence 65544
No 65
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=9.2e-06 Score=82.26 Aligned_cols=384 Identities=16% Similarity=0.158 Sum_probs=218.1
Q ss_pred CCCchHHhhhhhhHHHHHHHHhhh--HHHHhhh-hccc---cCCCCCccCCCCCchhhhcCCHHHHHHhhcCCChHHHHH
Q 009636 19 AVDADEGRRRREDNMVEIRKNKRE--ESLQKKR-REGL---QNQQPLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYE 92 (530)
Q Consensus 19 ~~~~~e~~~~r~~~~~~lRk~~r~--~~l~~~R-~~~~---~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~s~~~~~~~~ 92 (530)
.++..|.|+--......||+.-|+ ....+|| ++.- -+..+.|. -++.+ .-++++.+++--...-
T Consensus 20 akT~AEEr~vI~kE~a~IRa~ire~~~d~~~r~rniaKLlYi~MLGypa---------hFGqi-eclKLias~~f~dKRi 89 (866)
T KOG1062|consen 20 AKTAAEERAVIQKECAAIRASIREPTNDPRKRHRNIAKLLYIHMLGYPA---------HFGQI-ECLKLIASDNFLDKRI 89 (866)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCCc---------cchhh-HHHHHhcCCCchHHHH
Confidence 456667777677777889999888 4444444 3210 01111111 23333 3455667766444433
Q ss_pred HHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCC
Q 009636 93 CTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPS 172 (530)
Q Consensus 93 a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~ 172 (530)
+--+..-++.. +.+ +..+ +...+.+=|++++ .-++-.|+.+|++++. ++....+ .|-+-+++++.+
T Consensus 90 GYLaamLlLdE-~qd-vllL----ltNslknDL~s~n-q~vVglAL~alg~i~s--~Emardl-----apeVe~Ll~~~~ 155 (866)
T KOG1062|consen 90 GYLAAMLLLDE-RQD-LLLL----LTNSLKNDLNSSN-QYVVGLALCALGNICS--PEMARDL-----APEVERLLQHRD 155 (866)
T ss_pred HHHHHHHHhcc-chH-HHHH----HHHHHHhhccCCC-eeehHHHHHHhhccCC--HHHhHHh-----hHHHHHHHhCCC
Confidence 43333334433 222 2222 2344556666777 7888889999999987 6665544 577888999999
Q ss_pred HHHHHHHHHHHHhhhCCCchhhhhH--------hh--cC----ChHHHHHhhcCCC-----chhHHHHHHHHhhhhccCC
Q 009636 173 DDVREQAVWALGNIAGDSPRCRDLV--------LS--QG----GLVPLLAQLNGQP-----KLSMLRNATWTLSNFCRGK 233 (530)
Q Consensus 173 ~~i~~~a~~~L~nl~~~~~~~~~~i--------~~--~~----~i~~Ll~ll~~~~-----~~~~~~~a~~~L~~L~~~~ 233 (530)
+.++..|+.|...+..-.|..-+.+ .+ .| .+..+..++..+. -..+.......|.++....
T Consensus 156 ~~irKKA~Lca~r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~ 235 (866)
T KOG1062|consen 156 PYIRKKAALCAVRFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSG 235 (866)
T ss_pred HHHHHHHHHHHHHHHHcCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999987666543332 22 23 3445555553322 1235666777788887765
Q ss_pred CCCChh---hhhchHH----HHHHhhcCCChhHHHHHHHHHHHhccCChHHHH--HHHHhCcHHHHHHhhCCCCchhHHH
Q 009636 234 PQPPFD---QVSPALP----ALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQ--AVIEAGVFPRLAEFLMHPSPSVLIP 304 (530)
Q Consensus 234 ~~~~~~---~~~~~l~----~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~--~~~~~~~l~~L~~lL~~~~~~~~~~ 304 (530)
-.+... ...++++ .++.+|...|++.-......|..++.+.+.... ..+-...+..++.+. ++..++..
T Consensus 236 yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~--~~~~Lrvl 313 (866)
T KOG1062|consen 236 YSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIR--SNSGLRVL 313 (866)
T ss_pred CCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhcc--CCchHHHH
Confidence 222221 1233333 345566677777777777777777755432111 011111222222221 33445555
Q ss_pred HHHHHhHhhcCCchhhHHHhh--------------cCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 009636 305 ALRTVGNIVTGDDMQTQCVIE--------------YQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEAN 370 (530)
Q Consensus 305 al~~L~nl~~~~~~~~~~~~~--------------~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~ 370 (530)
|+.+||.+..+.+....++.- ..-=..++.+|+++ +..+|+.|.-.+..+... .++..
T Consensus 314 ainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~Dp-D~SIkrralELs~~lvn~--~Nv~~----- 385 (866)
T KOG1062|consen 314 AINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDP-DVSIKRRALELSYALVNE--SNVRV----- 385 (866)
T ss_pred HHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHhcc--ccHHH-----
Confidence 666666655544433322210 11234577888888 899999998888777653 23333
Q ss_pred cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHH
Q 009636 371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILK 442 (530)
Q Consensus 371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~ 442 (530)
++..|+..|...+.+++...+.-+..++..-.|+.. + .++.+...++..-.-+...+...+..++.
T Consensus 386 mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~-W-----~idtml~Vl~~aG~~V~~dv~~nll~LIa 451 (866)
T KOG1062|consen 386 MVKELLEFLESSDEDFKADIASKIAELAEKFAPDKR-W-----HIDTMLKVLKTAGDFVNDDVVNNLLRLIA 451 (866)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcch-h-----HHHHHHHHHHhcccccchhhHHHHHHHHh
Confidence 456888889888999999999999988876554321 2 24555555554333333333333334443
No 66
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.75 E-value=1e-05 Score=83.21 Aligned_cols=410 Identities=16% Similarity=0.185 Sum_probs=238.7
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHH-------------------------------------cC
Q 009636 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIR-------------------------------------SG 116 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~-------------------------------------~g 116 (530)
.+..+++.|.+.++++|..|++++.-+++.-+...+..+++ ..
T Consensus 48 vv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~t 127 (1233)
T KOG1824|consen 48 VVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAAT 127 (1233)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccH
Confidence 56788888899999999999999996665432223333221 11
Q ss_pred CH----HHHHHhhcC-CCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCc
Q 009636 117 VV----PRFVEFLLR-EDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP 191 (530)
Q Consensus 117 ~v----~~Lv~ll~~-~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~ 191 (530)
+. |.|.+.+.. .+...++.+++.+++.+.......... +..+++..++..+.++...++..++.+|+.++...+
T Consensus 128 V~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~ 206 (1233)
T KOG1824|consen 128 VCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCN 206 (1233)
T ss_pred HHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcC
Confidence 11 122222211 111235555555555544422221111 233445556666667778899999999999997665
Q ss_pred hhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhh---cCCChhHHHHHHHHHH
Q 009636 192 RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI---HSNDDEVLTDACWALS 268 (530)
Q Consensus 192 ~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll---~~~d~~v~~~a~~~l~ 268 (530)
.. ...+.+..|++-|.........+....+|..+|+......-.....++|.+.+.. +.+|.++++.++.++.
T Consensus 207 ~~----ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale 282 (1233)
T KOG1824|consen 207 RD----LYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALE 282 (1233)
T ss_pred HH----HHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHH
Confidence 32 2234677888888677788888899999999999876555566678889998888 6778999999999998
Q ss_pred HhccCChHHHHHHHHhCcHHHHHHhhCCC----------------------------------CchhHHHHHHHHhHhhc
Q 009636 269 YLSDGTNDKIQAVIEAGVFPRLAEFLMHP----------------------------------SPSVLIPALRTVGNIVT 314 (530)
Q Consensus 269 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~----------------------------------~~~~~~~al~~L~nl~~ 314 (530)
.+....+..+-..+. .++..+++.+..+ +|.+|+.|+.++..+..
T Consensus 283 ~fl~rcp~ei~p~~p-ei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~Is 361 (1233)
T KOG1824|consen 283 SFLRRCPKEILPHVP-EIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVIS 361 (1233)
T ss_pred HHHHhChhhhcccch-HHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHh
Confidence 887666554443332 3445555554320 35799999999988765
Q ss_pred CCchhhHHH------------------hhcCchHHHHHhhcCCC-------c-------------hhHHHHHHHHHHHHh
Q 009636 315 GDDMQTQCV------------------IEYQALPCLLNLLSGNY-------K-------------KSIKKEACWTVSNIT 356 (530)
Q Consensus 315 ~~~~~~~~~------------------~~~~~l~~L~~lL~~~~-------~-------------~~v~~~a~~~L~nl~ 356 (530)
...+....+ +...++..++.+|.+.. + ..++.....++.-+.
T Consensus 362 SR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~ 441 (1233)
T KOG1824|consen 362 SRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQ 441 (1233)
T ss_pred ccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHH
Confidence 433222111 11233444444443210 0 011111111111111
Q ss_pred c----CCHHH-------HHHHH--------H--hCcHHHHHHHHhcC--chhHHHHHHHHHHHhhcCCCHHHHHHHHHcC
Q 009636 357 A----GNREQ-------IQAVI--------E--ANIIGPLVALLENA--EFDIKKEAAWAISNATSGGTHEQIKFLVIQG 413 (530)
Q Consensus 357 ~----~~~~~-------~~~l~--------~--~~~i~~L~~ll~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~ 413 (530)
. .+-.. ...++ + ..++|.++..+.+. ....+..++..+.++.....++.....+ ..
T Consensus 442 ~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~-~~ 520 (1233)
T KOG1824|consen 442 KQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHL-SA 520 (1233)
T ss_pred HHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccch-hh
Confidence 0 00000 00011 0 12345555555433 4578889999998888876666544422 23
Q ss_pred ChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHH-hcCCCHHHHHHHHHHHHH
Q 009636 414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESL-QTHDNAEIYEKSVKLLET 492 (530)
Q Consensus 414 ~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l-~~~~~~~v~~~a~~il~~ 492 (530)
..+++.....++-+++..-|+-....++++-...+....-+.+++...+-. -.+..| ....+.+|+++|...+-.
T Consensus 521 Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~----~tl~rL~a~d~DqeVkeraIscmgq 596 (1233)
T KOG1824|consen 521 LSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYD----CTLQRLKATDSDQEVKERAISCMGQ 596 (1233)
T ss_pred hhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHH----HHHHHHhcccccHHHHHHHHHHHHH
Confidence 455666666778888888888888888876654332111134455554432 233334 467889999999888776
Q ss_pred hC
Q 009636 493 YW 494 (530)
Q Consensus 493 ~~ 494 (530)
|.
T Consensus 597 ~i 598 (1233)
T KOG1824|consen 597 II 598 (1233)
T ss_pred HH
Confidence 53
No 67
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.75 E-value=3.8e-06 Score=86.23 Aligned_cols=355 Identities=13% Similarity=0.098 Sum_probs=220.1
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 009636 77 VMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVI 156 (530)
Q Consensus 77 ~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~ 156 (530)
.+++.+.+.|-+.++.|+.-|..-+... .-..+.=-+..++..++++|.+.+ .++|..|+.|++-+++.-++.+-.
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkd-si~Ld~dSe~kvv~~lLklL~D~n-gEVQnlAVKClg~lvsKvke~~le-- 84 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKD-SIKLDDDSERKVVKMLLKLLEDKN-GEVQNLAVKCLGPLVSKVKEDQLE-- 84 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhh-hhhccccchhHHHHHHHHHHhccC-cHHHHHHHHHHHHHHhhchHHHHH--
Confidence 6788899999999999999888766542 111111122356888999999988 999999999999999744333211
Q ss_pred hCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCC----hHHHHHhhcC-CCchhHHHHHHHHhhhhcc
Q 009636 157 DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGG----LVPLLAQLNG-QPKLSMLRNATWTLSNFCR 231 (530)
Q Consensus 157 ~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~----i~~Ll~ll~~-~~~~~~~~~a~~~L~~L~~ 231 (530)
..+..|+.-+-+.....+..+.-.|......-+......+...+ .+.+...+.. .....++..++..+.-+..
T Consensus 85 --~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ls 162 (1233)
T KOG1824|consen 85 --TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLS 162 (1233)
T ss_pred --HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHH
Confidence 23455655544444444444443333222222212222222223 3344443322 2233356666666555444
Q ss_pred CCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC-CchhHHHHHHHHh
Q 009636 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP-SPSVLIPALRTVG 310 (530)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~~~~al~~L~ 310 (530)
.....-..+...++..++.-+.++-..|+..++.+|+.++...... +. .++++.|++-|... .+......+.+|+
T Consensus 163 r~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~---ly-~~li~~Ll~~L~~~~q~~~~rt~Iq~l~ 238 (1233)
T KOG1824|consen 163 RFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRD---LY-VELIEHLLKGLSNRTQMSATRTYIQCLA 238 (1233)
T ss_pred hhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHH---HH-HHHHHHHHhccCCCCchHHHHHHHHHHH
Confidence 3322222355667777777788888899999999999998654321 11 14566666666554 4445555677777
Q ss_pred HhhcCCchhhHHHhhcCchHHHHHhh---cCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhc------
Q 009636 311 NIVTGDDMQTQCVIEYQALPCLLNLL---SGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLEN------ 381 (530)
Q Consensus 311 nl~~~~~~~~~~~~~~~~l~~L~~lL---~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~------ 381 (530)
.++.........- -..++|.+..+. ... +.++|+.+..++.-+...+|..+-..+. .++..+++.+..
T Consensus 239 ~i~r~ag~r~~~h-~~~ivp~v~~y~~~~e~~-dDELrE~~lQale~fl~rcp~ei~p~~p-ei~~l~l~yisYDPNy~y 315 (1233)
T KOG1824|consen 239 AICRQAGHRFGSH-LDKIVPLVADYCNKIEED-DDELREYCLQALESFLRRCPKEILPHVP-EIINLCLSYISYDPNYNY 315 (1233)
T ss_pred HHHHHhcchhhcc-cchhhHHHHHHhcccccC-cHHHHHHHHHHHHHHHHhChhhhcccch-HHHHHHHHHhccCCCCCC
Confidence 7776443222111 135678888888 555 7889999999999888776665544332 233344443320
Q ss_pred --------------------------C--chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHH
Q 009636 382 --------------------------A--EFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVC 433 (530)
Q Consensus 382 --------------------------~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~a 433 (530)
+ ++.||++|+.++..++.. ..+....+.+ .+-+.++.-++..+..+....
T Consensus 316 d~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsS-R~E~L~~~~q-~l~p~lI~RfkEREEnVk~dv 393 (1233)
T KOG1824|consen 316 DTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISS-RLEMLPDFYQ-TLGPALISRFKEREENVKADV 393 (1233)
T ss_pred CCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhc-cHHHHHHHHH-HhCHHHHHHHHHHhhhHHHHH
Confidence 0 257999999999999885 4566655544 345667777888888888888
Q ss_pred HHHHHHHHHhhhh
Q 009636 434 LEGLENILKVGEA 446 (530)
Q Consensus 434 l~~l~~ll~~~~~ 446 (530)
..++..++..-+.
T Consensus 394 f~~yi~ll~qt~~ 406 (1233)
T KOG1824|consen 394 FHAYIALLKQTRP 406 (1233)
T ss_pred HHHHHHHHHcCCC
Confidence 8888888765544
No 68
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=4.7e-05 Score=75.52 Aligned_cols=314 Identities=16% Similarity=0.137 Sum_probs=211.1
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhh
Q 009636 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL 196 (530)
Q Consensus 117 ~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~ 196 (530)
++..+..-++.+. +.+|.....||..+........ ...+.+.+.+++......-+..+.+.++.+..+.. -..
T Consensus 97 ~~~~~~~~~~tps-~~~q~~~~~~l~~~~~~~~~~~----~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~--i~~ 169 (569)
T KOG1242|consen 97 IIEILLEELDTPS-KSVQRAVSTCLPPLVVLSKGLS----GEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLG--IES 169 (569)
T ss_pred HHHHHHHhcCCCc-HHHHHHHHHHhhhHHHHhhccC----HHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcH--Hhh
Confidence 4777888888888 8999999988887765221111 11345778888888788888899999998876654 345
Q ss_pred HhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChH
Q 009636 197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTND 276 (530)
Q Consensus 197 i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~ 276 (530)
+.+.+++..+...+.+..+..-++.+..+....+..-..........++|.++..+.+..+.++..+..+...+...-..
T Consensus 170 ~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~ 249 (569)
T KOG1242|consen 170 LKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSA 249 (569)
T ss_pred hhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCc
Confidence 56777888888888433333333345555544444433334445566777777777777888888877766555433221
Q ss_pred -HHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHH
Q 009636 277 -KIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI 355 (530)
Q Consensus 277 -~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl 355 (530)
... .+++.++.-+....|.....++..++.++...+.+.. ..-..++|.+.+.|.+. ++++|+.+..++.++
T Consensus 250 ~aVK-----~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs-~~lp~iiP~lsevl~DT-~~evr~a~~~~l~~~ 322 (569)
T KOG1242|consen 250 YAVK-----LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLS-LCLPDLIPVLSEVLWDT-KPEVRKAGIETLLKF 322 (569)
T ss_pred chhh-----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHH-HHHhHhhHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence 111 3345555545555899999999999999987776653 34568999999999999 999999999999999
Q ss_pred hc--CCHHHHHHHH------------------------------HhC----cHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009636 356 TA--GNREQIQAVI------------------------------EAN----IIGPLVALLENAEFDIKKEAAWAISNATS 399 (530)
Q Consensus 356 ~~--~~~~~~~~l~------------------------------~~~----~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 399 (530)
+. .+++ ++.++ +.. ++|.|.+-+...+..+++.++..+.|++.
T Consensus 323 ~svidN~d-I~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~ 401 (569)
T KOG1242|consen 323 GSVIDNPD-IQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCK 401 (569)
T ss_pred HHhhccHH-HHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHH
Confidence 87 3433 32221 111 13333444444567788999999999987
Q ss_pred CC-CHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhh
Q 009636 400 GG-THEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEA 446 (530)
Q Consensus 400 ~~-~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~ 446 (530)
-- ++.....++. .+++.|-..+....|+++..+..+|+.+++....
T Consensus 402 LveDp~~lapfl~-~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~ 448 (569)
T KOG1242|consen 402 LVEDPKDLAPFLP-SLLPGLKENLDDAVPEVRAVAARALGALLERLGE 448 (569)
T ss_pred hhcCHHHHhhhHH-HHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHh
Confidence 54 3333333222 3566666666777999999999999988875544
No 69
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.73 E-value=1.6e-06 Score=84.14 Aligned_cols=322 Identities=16% Similarity=0.079 Sum_probs=202.3
Q ss_pred HHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCch
Q 009636 113 IRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR 192 (530)
Q Consensus 113 ~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~ 192 (530)
.-.+++|.++.++.+++ ..+++.|+..+.|++.... ......-..+...+.++....+..++. ++..+-.+..+-..
T Consensus 81 Y~~~iv~Pv~~cf~D~d-~~vRyyACEsLYNiaKv~k-~~v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIVt 157 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQD-SQVRYYACESLYNIAKVAK-GEVLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIVT 157 (675)
T ss_pred HHHHhhHHHHHhccCcc-ceeeeHhHHHHHHHHHHhc-cCcccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhcc
Confidence 34678999999999988 8999999999999987321 111112234455666666555555544 44555555433222
Q ss_pred hhh-hHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 009636 193 CRD-LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLS 271 (530)
Q Consensus 193 ~~~-~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~ 271 (530)
-++ .+--.+++|.|-..+ ...++..+...+.-+..|-..++..-......+++.|..+|..+.++|+.-+=.+++++.
T Consensus 158 e~~~tFsL~~~ipLL~eri-y~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL 236 (675)
T KOG0212|consen 158 ESASTFSLPEFIPLLRERI-YVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFL 236 (675)
T ss_pred ccccccCHHHHHHHHHHHH-hcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 121 111122343343444 556788888877777766555433334456788899999999998888866555555443
Q ss_pred c---CChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCch-hHHHH
Q 009636 272 D---GTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKK-SIKKE 347 (530)
Q Consensus 272 ~---~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~-~v~~~ 347 (530)
. .++.. +--...++.++..+.++++.++..|+.-+.-++.-.+... ...-.|++..+++++.+. .+ .++..
T Consensus 237 ~eI~s~P~s---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~-l~~~s~il~~iLpc~s~~-e~~~i~~~ 311 (675)
T KOG0212|consen 237 AEIRSSPSS---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDL-LLYLSGILTAILPCLSDT-EEMSIKEY 311 (675)
T ss_pred HHHhcCccc---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcch-hhhhhhhhhhcccCCCCC-ccccHHHH
Confidence 1 12211 1112567888888999999999998877777765444332 334568888888998877 44 45544
Q ss_pred HHHHHHHHhc--CCHHHHHHHHHh-CcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCC
Q 009636 348 ACWTVSNITA--GNREQIQAVIEA-NIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC 424 (530)
Q Consensus 348 a~~~L~nl~~--~~~~~~~~l~~~-~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~ 424 (530)
+..+-+.+.. +.+..... ++. .++..|.+.+.++..+.|..++.-+..+-.....+. -. -...+...|..-|.+
T Consensus 312 a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql-~~-h~~~if~tLL~tLsd 388 (675)
T KOG0212|consen 312 AQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQL-LV-HNDSIFLTLLKTLSD 388 (675)
T ss_pred HHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchh-hh-hccHHHHHHHHhhcC
Confidence 4433222222 11111111 332 367888888998889999999887777766432221 11 133567788888899
Q ss_pred CChHHHHHHHHHHHHHHHhhhh
Q 009636 425 PDPRIVTVCLEGLENILKVGEA 446 (530)
Q Consensus 425 ~~~~~~~~al~~l~~ll~~~~~ 446 (530)
.+..++..++..+..++...+.
T Consensus 389 ~sd~vvl~~L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 389 RSDEVVLLALSLLASICSSSNS 410 (675)
T ss_pred chhHHHHHHHHHHHHHhcCccc
Confidence 9999999999999998866543
No 70
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=4.5e-05 Score=69.46 Aligned_cols=344 Identities=15% Similarity=0.145 Sum_probs=229.4
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCc---HHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChh
Q 009636 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPP---IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE 150 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~---~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~ 150 (530)
..|.+-..|..++..+...++..+..++...+... +..++..|+++.++.++..++ .++...|...+..++. .+.
T Consensus 83 lmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged-deVAkAAiesikrial-fpa 160 (524)
T KOG4413|consen 83 LMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED-DEVAKAAIESIKRIAL-FPA 160 (524)
T ss_pred hhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc-HHHHHHHHHHHHHHHh-cHH
Confidence 34555566778888899999999998887643222 445668999999999999888 8999999999999998 788
Q ss_pred hHHHHHhCCChHHHHH--hhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhh
Q 009636 151 HTKVVIDHGAVPIFVK--LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228 (530)
Q Consensus 151 ~~~~~~~~g~i~~L~~--ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~ 228 (530)
....++.+..+..+-. +.-..+.-.+......+..|.+-++.....+...|.+..|..-+....|.-++.+++.....
T Consensus 161 aleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvte 240 (524)
T KOG4413|consen 161 ALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTE 240 (524)
T ss_pred HHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHH
Confidence 8888888777654432 22234555677788888899888888888888999998888888666788888999999999
Q ss_pred hccCCCCCChhhhhchHHHHHHhhcCC--ChhHHHHHHHHHHHhccCCh--H-HHHHHHHh--CcHHHHHHhhCCCCchh
Q 009636 229 FCRGKPQPPFDQVSPALPALAHLIHSN--DDEVLTDACWALSYLSDGTN--D-KIQAVIEA--GVFPRLAEFLMHPSPSV 301 (530)
Q Consensus 229 L~~~~~~~~~~~~~~~l~~L~~ll~~~--d~~v~~~a~~~l~~l~~~~~--~-~~~~~~~~--~~l~~L~~lL~~~~~~~ 301 (530)
|........+....+++..+...+.-. +|--.-.++...+.+..... + .-+.+++. -+++..+..+...+++.
T Consensus 241 LaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpda 320 (524)
T KOG4413|consen 241 LAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDA 320 (524)
T ss_pred HHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchH
Confidence 988776777777788888888777633 33333333433333322110 0 00111111 23445556677789999
Q ss_pred HHHHHHHHhHhhcCCchhhHHHhhcCc--hHHH-HHhhcCCCchhHHHHHHHHHHHHhcC---CHHHH---------HHH
Q 009636 302 LIPALRTVGNIVTGDDMQTQCVIEYQA--LPCL-LNLLSGNYKKSIKKEACWTVSNITAG---NREQI---------QAV 366 (530)
Q Consensus 302 ~~~al~~L~nl~~~~~~~~~~~~~~~~--l~~L-~~lL~~~~~~~v~~~a~~~L~nl~~~---~~~~~---------~~l 366 (530)
+..|+.++|.+.+.. +..+.+...|- ...+ ....... ...-+..+..+|.+++.. .++++ ..+
T Consensus 321 ieaAiDalGilGSnt-eGadlllkTgppaaehllarafdqn-ahakqeaaihaLaaIagelrlkpeqitDgkaeerlrcl 398 (524)
T KOG4413|consen 321 IEAAIDALGILGSNT-EGADLLLKTGPPAAEHLLARAFDQN-AHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCL 398 (524)
T ss_pred HHHHHHHHHhccCCc-chhHHHhccCChHHHHHHHHHhccc-ccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHH
Confidence 999999999987643 34444444432 2222 2223322 333456677888888762 22221 111
Q ss_pred H-H-------hCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcc
Q 009636 367 I-E-------ANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLL 422 (530)
Q Consensus 367 ~-~-------~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL 422 (530)
+ + ..-...+..+++.+.++++..+..++..++... .-....+...+++....+.-
T Consensus 399 ifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaqP-WalkeifakeefieiVtDas 461 (524)
T KOG4413|consen 399 IFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQP-WALKEIFAKEEFIEIVTDAS 461 (524)
T ss_pred HHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcCc-HHHHHHhcCccceeeecccc
Confidence 1 1 123456666777788999999999999998853 33444444556666555543
No 71
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.70 E-value=1.4e-06 Score=82.62 Aligned_cols=271 Identities=17% Similarity=0.169 Sum_probs=186.3
Q ss_pred HHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhh
Q 009636 110 EEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIA 187 (530)
Q Consensus 110 ~~~~~~g~v~~Lv~ll~~~~-~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~ 187 (530)
+.+...|.+..|+.++..++ ...++.+|.+.|-.+.. .++++.+...| +..++.+.+. ..++.....+.+|.++.
T Consensus 174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mF 250 (832)
T KOG3678|consen 174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMF 250 (832)
T ss_pred hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHh
Confidence 44555788999999999887 23569999999999887 67888888777 5555555544 56788999999999999
Q ss_pred CCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCC--CCChhhhhchHHHHHHhhcCCChhHHHHHHH
Q 009636 188 GDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP--QPPFDQVSPALPALAHLIHSNDDEVLTDACW 265 (530)
Q Consensus 188 ~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~--~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~ 265 (530)
.++.+....++..|++..++-.. ...++.+.+.+..+|.|++-+.. .........+-..|..+-.+.|+-.+.++|.
T Consensus 251 KHSeet~~~Lvaa~~lD~vl~~~-rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~ACl 329 (832)
T KOG3678|consen 251 KHSEETCQRLVAAGGLDAVLYWC-RRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACL 329 (832)
T ss_pred hhhHHHHHHHHhhcccchheeec-ccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHH
Confidence 99888888899999999988888 67789999999999999987752 2223334555566777777778888999999
Q ss_pred HHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHH
Q 009636 266 ALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIK 345 (530)
Q Consensus 266 ~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~ 345 (530)
+++.++.+.+- -..+.++|.+..+-.++.+-++..... --...+.+. ...-++.|+.+|++. ..+.+
T Consensus 330 AV~vlat~KE~-E~~VrkS~TlaLVEPlva~~DP~~FAR---D~hd~aQG~--------~~d~LqRLvPlLdS~-R~EAq 396 (832)
T KOG3678|consen 330 AVAVLATNKEV-EREVRKSGTLALVEPLVASLDPGRFAR---DAHDYAQGR--------GPDDLQRLVPLLDSN-RLEAQ 396 (832)
T ss_pred HHhhhhhhhhh-hHHHhhccchhhhhhhhhccCcchhhh---hhhhhhccC--------ChHHHHHhhhhhhcc-hhhhh
Confidence 99999877543 344666777766666666555432111 001111111 123578889999876 55555
Q ss_pred HHHHHHHHHHhc-CCH-HHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHh
Q 009636 346 KEACWTVSNITA-GNR-EQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNA 397 (530)
Q Consensus 346 ~~a~~~L~nl~~-~~~-~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 397 (530)
..+++-++-=+. .+. ....-+-+-|.|..|-++.++.+..-.+-|..+|.-+
T Consensus 397 ~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtvi 450 (832)
T KOG3678|consen 397 CIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVI 450 (832)
T ss_pred hhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHh
Confidence 555554443332 111 1122344668899999998877654444455555444
No 72
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.70 E-value=7.6e-06 Score=81.94 Aligned_cols=332 Identities=13% Similarity=0.087 Sum_probs=208.9
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChh--hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhh
Q 009636 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSE--HTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD 195 (530)
Q Consensus 118 v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~--~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~ 195 (530)
+..++..|++.. +.++.+|+..++.++.--.. .-+.+...| -.|-..|....+++.-..+.+|..|.....-.+-
T Consensus 801 ~stiL~rLnnks-a~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylgeeypEvLgsILgAikaI~nvigm~km 877 (1172)
T KOG0213|consen 801 CSTILWRLNNKS-AKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKM 877 (1172)
T ss_pred HHHHHHHhcCCC-hhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcCcccHHHHHHHHHHHHHHHHhcccccc
Confidence 444556677777 89999999988887752111 122333334 2366677778888776666655555422110000
Q ss_pred hHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCC-ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC
Q 009636 196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP-PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT 274 (530)
Q Consensus 196 ~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~ 274 (530)
.---.+++|.|..+| ++....++.+++..+..+|...+.. .......+.--|+.+|.+.+.+++..+..++++++..-
T Consensus 878 ~pPi~dllPrltPIL-knrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaI 956 (1172)
T KOG0213|consen 878 TPPIKDLLPRLTPIL-KNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAI 956 (1172)
T ss_pred CCChhhhcccchHhh-hhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhc
Confidence 001245788899999 7888999999999999999886432 22233445556788888899999999999999987542
Q ss_pred hHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 009636 275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN 354 (530)
Q Consensus 275 ~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n 354 (530)
. -.+++..|+.-|+..+-..+....-+++-.+..+... .++|.|+.=...+ +..|+.-...+++-
T Consensus 957 G-------PqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pF-------tVLPalmneYrtP-e~nVQnGVLkalsf 1021 (1172)
T KOG0213|consen 957 G-------PQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPF-------TVLPALMNEYRTP-EANVQNGVLKALSF 1021 (1172)
T ss_pred C-------HHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCch-------hhhHHHHhhccCc-hhHHHHhHHHHHHH
Confidence 1 1244555555555544433433333444333322211 3566666666666 77788888888887
Q ss_pred HhcCCHHH-HHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccC-------CCC
Q 009636 355 ITAGNREQ-IQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV-------CPD 426 (530)
Q Consensus 355 l~~~~~~~-~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~-------~~~ 426 (530)
+.....+. ..++ ..+.|.|-+.|.+.|..-|..|+.++.+++.+.. -.|..+.++.+|+ ...
T Consensus 1022 ~FeyigemskdYi--yav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~--------g~g~eda~iHLLN~iWpNIle~s 1091 (1172)
T KOG0213|consen 1022 MFEYIGEMSKDYI--YAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVP--------GTGCEDALIHLLNLIWPNILETS 1091 (1172)
T ss_pred HHHHHHHHhhhHH--HHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCC--------CcCcHHHHHHHHHHhhhhhcCCC
Confidence 76522121 1122 2367778888888899999999999999998642 1244555555543 467
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 009636 427 PRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLD 496 (530)
Q Consensus 427 ~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~~ 496 (530)
|.++....+++..+-..-.. .-.++.+.+=.-|+...|++..-.+.+..+-.
T Consensus 1092 Phviqa~~e~~eg~r~~Lg~------------------~~~~~Y~~QGLFHParkVR~~yw~vyn~my~~ 1143 (1172)
T KOG0213|consen 1092 PHVIQAFDEAMEGLRVALGP------------------QAMLKYCLQGLFHPARKVRKRYWTVYNSMYHG 1143 (1172)
T ss_pred hHHHHHHHHHHHHHHHHhch------------------HHHHHHHHHhccCcHHHHHHHHHHHHHhHhhc
Confidence 77887777776665432211 11133444445789999999988888876554
No 73
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.67 E-value=1.3e-06 Score=82.81 Aligned_cols=266 Identities=14% Similarity=0.077 Sum_probs=179.9
Q ss_pred CCHHHHHHhhcCCChH--HHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChh
Q 009636 73 ENLPVMVAGVWSNDSG--VQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE 150 (530)
Q Consensus 73 ~~l~~l~~~l~s~~~~--~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~ 150 (530)
+.+..|++++++++.+ ++.+|.+.|..++.. .+.+.+..-| +..++.+-+....++.+...+.+|.++...+.+
T Consensus 180 ~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a---eN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSee 255 (832)
T KOG3678|consen 180 GGLDLLLRMFQAPNLETSVRVEAARLLEQILVA---ENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEE 255 (832)
T ss_pred chHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh---hhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHH
Confidence 5788999999988755 588999999999865 4566666555 444455444444489999999999999999999
Q ss_pred hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCC-CchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhh
Q 009636 151 HTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGD-SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF 229 (530)
Q Consensus 151 ~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~-~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L 229 (530)
....++..|++..++-..+..++.+..+|+.+|+|++-+ ....+..+++..+-.-|.-+. .+.|.-++.+||.+.+.|
T Consensus 256 t~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA-~skDel~R~~AClAV~vl 334 (832)
T KOG3678|consen 256 TCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLA-FSKDELLRLHACLAVAVL 334 (832)
T ss_pred HHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhh-cchHHHHHHHHHHHHhhh
Confidence 999999999999999999998999999999999999843 334556666666666666666 667888999999999999
Q ss_pred ccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHH
Q 009636 230 CRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV 309 (530)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L 309 (530)
+..+.........+.+...-.++.+-|+.--.. ...+..+ -...+-++.|+.+|++.....+..+..-+
T Consensus 335 at~KE~E~~VrkS~TlaLVEPlva~~DP~~FAR----------D~hd~aQ-G~~~d~LqRLvPlLdS~R~EAq~i~AF~l 403 (832)
T KOG3678|consen 335 ATNKEVEREVRKSGTLALVEPLVASLDPGRFAR----------DAHDYAQ-GRGPDDLQRLVPLLDSNRLEAQCIGAFYL 403 (832)
T ss_pred hhhhhhhHHHhhccchhhhhhhhhccCcchhhh----------hhhhhhc-cCChHHHHHhhhhhhcchhhhhhhHHHHH
Confidence 988755555555565655555666555532111 1111111 11224578899999876544444433333
Q ss_pred hHhhcC-Cc-hhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHH
Q 009636 310 GNIVTG-DD-MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI 355 (530)
Q Consensus 310 ~nl~~~-~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl 355 (530)
+.=+.- +. .....+-+-|.++.|-.+.+++ +..-.+.|-.+|.-+
T Consensus 404 ~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~-d~vaakfAseALtvi 450 (832)
T KOG3678|consen 404 CAEAAIKSLQGKTKVFSEIGAIQALKEVASSP-DEVAAKFASEALTVI 450 (832)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHh
Confidence 322211 11 1222344668899998888876 543334444444444
No 74
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.67 E-value=2.1e-06 Score=86.72 Aligned_cols=301 Identities=16% Similarity=0.151 Sum_probs=184.2
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009636 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (530)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (530)
..+..++.-..+++|.++..|++....+ .....+.. +...+...+++.+ +-++..|+-+..++-..++
T Consensus 86 ~avnt~~kD~~d~np~iR~lAlrtm~~l---~v~~i~ey-----~~~Pl~~~l~d~~-~yvRktaa~~vakl~~~~~--- 153 (734)
T KOG1061|consen 86 LAVNTFLKDCEDPNPLIRALALRTMGCL---RVDKITEY-----LCDPLLKCLKDDD-PYVRKTAAVCVAKLFDIDP--- 153 (734)
T ss_pred hhhhhhhccCCCCCHHHHHHHhhceeeE---eehHHHHH-----HHHHHHHhccCCC-hhHHHHHHHHHHHhhcCCh---
Confidence 3555555556667777776666654422 11111222 4667888888888 8999999999888877544
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009636 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (530)
Q Consensus 153 ~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~ 232 (530)
+.+.+.|+++.|-.++.+.++.+...|+.+|..|....+..-...+....+..++..+ +.-.-..-+.+|-.++..
T Consensus 154 ~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al----~ec~EW~qi~IL~~l~~y 229 (734)
T KOG1061|consen 154 DLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEAL----NECTEWGQIFILDCLAEY 229 (734)
T ss_pred hhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHH----HHhhhhhHHHHHHHHHhc
Confidence 3566789999999999999999999999999999866653111222222344444444 222223334455566666
Q ss_pred CCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHh
Q 009636 233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312 (530)
Q Consensus 233 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl 312 (530)
.+... .....++..+...+.+.++.+...+...+.++...-..... .+-..+-+.++.++.... .++..|++-+.-+
T Consensus 230 ~p~d~-~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~-~~~~K~~~pl~tlls~~~-e~qyvaLrNi~li 306 (734)
T KOG1061|consen 230 VPKDS-REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNE-LLFKKVAPPLVTLLSSES-EIQYVALRNINLI 306 (734)
T ss_pred CCCCc-hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHH-HHHHHhcccceeeecccc-hhhHHHHhhHHHH
Confidence 55444 44566777778888888888888888888777655444222 233356666777776666 6666666665555
Q ss_pred hcCCchhhHH-------------------------Hh-hcC---chHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHH
Q 009636 313 VTGDDMQTQC-------------------------VI-EYQ---ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQI 363 (530)
Q Consensus 313 ~~~~~~~~~~-------------------------~~-~~~---~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~ 363 (530)
....+..... +. +.+ ++.-+...-..- +.+..+++.+++++++..-.+.
T Consensus 307 l~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatev-D~~fvrkaIraig~~aik~e~~- 384 (734)
T KOG1061|consen 307 LQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEV-DVDFVRKAVRAIGRLAIKAEQS- 384 (734)
T ss_pred HHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhh-CHHHHHHHHHHhhhhhhhhhhh-
Confidence 4433321100 00 111 222222222333 6778889999999998743221
Q ss_pred HHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009636 364 QAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS 399 (530)
Q Consensus 364 ~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 399 (530)
.+++..|++++...-..+..+++..+.++..
T Consensus 385 -----~~cv~~lLell~~~~~yvvqE~~vvi~dilR 415 (734)
T KOG1061|consen 385 -----NDCVSILLELLETKVDYVVQEAIVVIRDILR 415 (734)
T ss_pred -----hhhHHHHHHHHhhcccceeeehhHHHHhhhh
Confidence 4567777777775544555566666666654
No 75
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.60 E-value=2.3e-06 Score=88.62 Aligned_cols=248 Identities=16% Similarity=0.196 Sum_probs=189.3
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009636 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 153 (530)
.+|.+++.|-| .--++.|+..|.+++.-. ...+.....-|+.|.++++|+++. .+++.--+.+-+.|..-++.+..
T Consensus 473 QLPiVLQVLLS--QvHRlRAL~LL~RFLDlG-pWAV~LaLsVGIFPYVLKLLQS~a-~ELrpiLVFIWAKILAvD~SCQ~ 548 (1387)
T KOG1517|consen 473 QLPIVLQVLLS--QVHRLRALVLLARFLDLG-PWAVDLALSVGIFPYVLKLLQSSA-RELRPILVFIWAKILAVDPSCQA 548 (1387)
T ss_pred hcchHHHHHHH--HHHHHHHHHHHHHHhccc-hhhhhhhhccchHHHHHHHhccch-HhhhhhHHHHHHHHHhcCchhHH
Confidence 45666665554 345677999999988653 566777778899999999999998 89999888899998887888888
Q ss_pred HHHhCCChHHHHHhhCC---CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhc
Q 009636 154 VVIDHGAVPIFVKLLYS---PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC 230 (530)
Q Consensus 154 ~~~~~g~i~~L~~ll~~---~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~ 230 (530)
.+++.++-.++++.|.. -+++-+..|+.+|+.|+.+-+--+..+.+.+.+...+..+.++..+-++..++-||..|-
T Consensus 549 dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW 628 (1387)
T KOG1517|consen 549 DLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLW 628 (1387)
T ss_pred HHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHh
Confidence 88888778888888866 245788999999999998877778888899999988999955456788899999999998
Q ss_pred cCCCCCCh-hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC----hHHHHHH------------HHhCcH---HHH
Q 009636 231 RGKPQPPF-DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT----NDKIQAV------------IEAGVF---PRL 290 (530)
Q Consensus 231 ~~~~~~~~-~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~----~~~~~~~------------~~~~~l---~~L 290 (530)
.+.+.... .....+-..|..+|..+-++|+..++.+|+.+..+. ++....+ ++.-+. -.+
T Consensus 629 ~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~l 708 (1387)
T KOG1517|consen 629 EDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSL 708 (1387)
T ss_pred hhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHH
Confidence 88744433 344667788999998899999999999999987652 2222211 121111 256
Q ss_pred HHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhh
Q 009636 291 AEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIE 325 (530)
Q Consensus 291 ~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~ 325 (530)
+.+++.+++-++....-++..++.+.......+.-
T Consensus 709 l~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~va~ 743 (1387)
T KOG1517|consen 709 LALVSDGSPLVRTEVVVALSHFVVGYVSHLKVVAG 743 (1387)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHhhHHHhHHHhh
Confidence 67778888888888888888888777655544433
No 76
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.60 E-value=2.2e-05 Score=81.90 Aligned_cols=382 Identities=13% Similarity=0.122 Sum_probs=242.3
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 009636 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV 154 (530)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~ 154 (530)
.+..-++.+...+.++..++..+.+++..- ......++++|.+.++..+.. ..++..|...+.++........
T Consensus 239 r~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~----~~~~~~s~v~~~~~~L~~Ddq-dsVr~~a~~~~~~l~~l~~~~~-- 311 (759)
T KOG0211|consen 239 RPIVQSLCQDDTPMVRRAVASNLGNIAKVL----ESEIVKSEVLPTLIQLLRDDQ-DSVREAAVESLVSLLDLLDDDD-- 311 (759)
T ss_pred HHHHHhhccccchhhHHHHHhhhHHHHHHH----HHHHHHhhccHHHhhhhhcch-hhHHHHHHHHHHHHHHhcCCch--
Confidence 344444555677889999999888887542 225567889999999998877 7999999998888876322111
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhC--------------------CCchhh--------------------
Q 009636 155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAG--------------------DSPRCR-------------------- 194 (530)
Q Consensus 155 ~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~--------------------~~~~~~-------------------- 194 (530)
-....+.+.+++...+.+..++.........++. +....+
T Consensus 312 d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~ 391 (759)
T KOG0211|consen 312 DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCY 391 (759)
T ss_pred hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccc
Confidence 1122456777777777666666555444433331 110000
Q ss_pred hhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC
Q 009636 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT 274 (530)
Q Consensus 195 ~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~ 274 (530)
..+....+++.+-.++ .+.+..++...+.....+.--.+ ........+|.+...++..++.++.+..+.+..+-...
T Consensus 392 ~~i~~~~ilp~~~~lv-~d~~~~vr~a~a~~~~~~~p~~~--k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~ 468 (759)
T KOG0211|consen 392 PNIPDSSILPEVQVLV-LDNALHVRSALASVITGLSPILP--KERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVN 468 (759)
T ss_pred cccchhhhhHHHHHHH-hcccchHHHHHhccccccCccCC--cCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhcc
Confidence 0011111222222222 34444555444444444332222 33344667788888888889999999998776654333
Q ss_pred hHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 009636 275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN 354 (530)
Q Consensus 275 ~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n 354 (530)
+..-...+....++.+..+-....|.++...++.+-.++.... ..+++...-+.+..++.+. ...+++.|+..+.-
T Consensus 469 ~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~-v~~Ir~~aa~~l~~ 544 (759)
T KOG0211|consen 469 DVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDH-VYSIREAAARNLPA 544 (759)
T ss_pred CcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhh-HHHHHHHHHHHhHH
Confidence 3222223444677888888777789999999998888875333 2344555666677777776 77899999988888
Q ss_pred HhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHH
Q 009636 355 ITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCL 434 (530)
Q Consensus 355 l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al 434 (530)
++..... .......++.++.....++...|...+.++.-++.-...+. ....+++.+.++..+..+.|+..++
T Consensus 545 l~~~~G~---~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei----~~~~Llp~~~~l~~D~vanVR~nva 617 (759)
T KOG0211|consen 545 LVETFGS---EWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEI----TCEDLLPVFLDLVKDPVANVRINVA 617 (759)
T ss_pred HHHHhCc---chhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHH----HHHHHhHHHHHhccCCchhhhhhHH
Confidence 8762211 11123467777777777678999999999988776443332 3345788999999999999999999
Q ss_pred HHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHH
Q 009636 435 EGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLE 491 (530)
Q Consensus 435 ~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~ 491 (530)
..|..+........ .+....+.++.|..+++.+++.+|.....
T Consensus 618 k~L~~i~~~L~~~~--------------~~~~v~pll~~L~~d~~~dvr~~a~~a~~ 660 (759)
T KOG0211|consen 618 KHLPKILKLLDESV--------------RDEEVLPLLETLSSDQELDVRYRAILAFG 660 (759)
T ss_pred HHHHHHHhhcchHH--------------HHHHHHHHHHHhccCcccchhHHHHHHHH
Confidence 99999987653321 11223455666666777777666655444
No 77
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.57 E-value=9.5e-07 Score=85.11 Aligned_cols=305 Identities=14% Similarity=0.112 Sum_probs=196.7
Q ss_pred HHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC-CCCChhhhhchHHHHHHhhcCCCh
Q 009636 179 AVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDD 257 (530)
Q Consensus 179 a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~l~~L~~ll~~~d~ 257 (530)
++.+|-.++..-...|.-+.+..+.+.|+++| +.++..+.-.++..++|+.-.. +-.......+++..|+.++.+.|.
T Consensus 409 ~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~L-s~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDd 487 (743)
T COG5369 409 IVLFLKSMSRSVTFLRTGLLDYPIVELLIDAL-SNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDD 487 (743)
T ss_pred HHHHHHHhhHHHHHHHhhccccchHHHHHHHh-cCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchh
Confidence 33444555555555677778888999999999 6666666667777777776655 334455668899999999999999
Q ss_pred hHHHHHHHHHHHhccCChHHHH-HHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCch---hhHHHhhc----Cch
Q 009636 258 EVLTDACWALSYLSDGTNDKIQ-AVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM---QTQCVIEY----QAL 329 (530)
Q Consensus 258 ~v~~~a~~~l~~l~~~~~~~~~-~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~---~~~~~~~~----~~l 329 (530)
.++.+..|.+.++..+.+...+ ..+..-.+..++.+..++.+.++..++.++.|+...+.. ..+..++. -+.
T Consensus 488 aLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylf 567 (743)
T COG5369 488 ALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLF 567 (743)
T ss_pred hhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHH
Confidence 9999999999999877654322 244556789999999999999999999999999873322 22222221 256
Q ss_pred HHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH-hCcHHHHHHHHhcC-----------chhHHHHHHHHHHHh
Q 009636 330 PCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIE-ANIIGPLVALLENA-----------EFDIKKEAAWAISNA 397 (530)
Q Consensus 330 ~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~i~~L~~ll~~~-----------~~~v~~~a~~aL~nl 397 (530)
..|++.+... +|-.-...|+.|.++++.+....+.+.. ..++..+.++|... ...+-.....+..++
T Consensus 568 k~l~~k~e~~-np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l 646 (743)
T COG5369 568 KRLIDKYEEN-NPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNL 646 (743)
T ss_pred HHHHHHHHhc-CchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeecc
Confidence 6777777777 7777777899999998866554444443 34555555544321 112222223333344
Q ss_pred hcCCCHHHHHHHHHcCCh--HHHHhc---cCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHH
Q 009636 398 TSGGTHEQIKFLVIQGCI--KPLCDL---LVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIE 472 (530)
Q Consensus 398 ~~~~~~~~~~~l~~~~~i--~~L~~l---L~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~ 472 (530)
....+ .+- .+.. +.+-.+ -..++.++.....|.+.++.-. +...+.. ...-.-++.+.+.|.-+-+.
T Consensus 647 ~e~~d-~f~-----r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~-~~~~~vt-ratveR~~iL~~~G~~e~l~ 718 (743)
T COG5369 647 SENSD-KFK-----RLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWK-EDGSEVT-RATVERIQILCANGIREWLV 718 (743)
T ss_pred ccccc-ccc-----cceecCCCccccccccCCCchhhhhccceEEEecccC-ccCCccc-hhhHHHHHHHHHccHHHHHH
Confidence 33211 110 1111 122111 1123445666777777764321 1111000 01224578888899999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHh
Q 009636 473 SLQTHDNAEIYEKSVKLLETY 493 (530)
Q Consensus 473 ~l~~~~~~~v~~~a~~il~~~ 493 (530)
.+|.++++.|++++-..+...
T Consensus 719 k~q~~~Sl~vrek~~taL~~l 739 (743)
T COG5369 719 KIQAKDSLIVREKIGTALENL 739 (743)
T ss_pred HHhccCcHHHHHHHHHHHHhh
Confidence 999999999999999988753
No 78
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.56 E-value=5.6e-06 Score=80.47 Aligned_cols=318 Identities=13% Similarity=0.109 Sum_probs=202.4
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009636 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (530)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (530)
..+++++..+.+.|..+++.||..+-+++...+..... ....+...+.++..+++ ..++. ++..+-.+..+-....
T Consensus 84 ~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~--~Fn~iFdvL~klsaDsd-~~V~~-~aeLLdRLikdIVte~ 159 (675)
T KOG0212|consen 84 KIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLV--YFNEIFDVLCKLSADSD-QNVRG-GAELLDRLIKDIVTES 159 (675)
T ss_pred HhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCccc--chHHHHHHHHHHhcCCc-ccccc-HHHHHHHHHHHhcccc
Confidence 36788999999999999999999999887653222221 22445667777777766 55543 4444444433211111
Q ss_pred H-HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHh-hcCChHHHHHhhcCCCchhHHHHHHHHhhhhc
Q 009636 153 K-VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVL-SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC 230 (530)
Q Consensus 153 ~-~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~-~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~ 230 (530)
+ .+--.+++|.|-..+...++..|...+.-|..+-. .| ..+.+- -..+++.|.++| .+++.+++..+-.+++++.
T Consensus 160 ~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds-~P-~~~m~~yl~~~ldGLf~~L-sD~s~eVr~~~~t~l~~fL 236 (675)
T KOG0212|consen 160 ASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDS-VP-DLEMISYLPSLLDGLFNML-SDSSDEVRTLTDTLLSEFL 236 (675)
T ss_pred ccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhc-CC-cHHHHhcchHHHHHHHHHh-cCCcHHHHHHHHHHHHHHH
Confidence 1 11113455666666666778888877777766632 22 233332 123567778888 7778888887777777766
Q ss_pred cCCC-CCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCch-hHHHHHHH
Q 009636 231 RGKP-QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS-VLIPALRT 308 (530)
Q Consensus 231 ~~~~-~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~-~~~~al~~ 308 (530)
..-. .+........++.++.-+.++++.++..++.-+..+..-.... -...-+|++..+++++.+.++. ++..+...
T Consensus 237 ~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~-~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~ 315 (675)
T KOG0212|consen 237 AEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRD-LLLYLSGILTAILPCLSDTEEMSIKEYAQMV 315 (675)
T ss_pred HHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcc-hhhhhhhhhhhcccCCCCCccccHHHHHHHH
Confidence 5542 2233356778899999999999999988776666665443322 1233458888888888887664 44443322
Q ss_pred ---HhHhhcCCchhhHHHhhc-CchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCch
Q 009636 309 ---VGNIVTGDDMQTQCVIEY-QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEF 384 (530)
Q Consensus 309 ---L~nl~~~~~~~~~~~~~~-~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~ 384 (530)
+..++.. +...+. ++. .+++.+.+.+.++ ..+.|..+..-+.-+-...+.+. ......+.+.|+..|.+.+.
T Consensus 316 n~~l~~l~s~-~~~~~~-id~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~~~p~ql-~~h~~~if~tLL~tLsd~sd 391 (675)
T KOG0212|consen 316 NGLLLKLVSS-ERLKEE-IDYGSIIEVLTKYLSDD-REETRIAVLNWIILLYHKAPGQL-LVHNDSIFLTLLKTLSDRSD 391 (675)
T ss_pred HHHHHHHHhh-hhhccc-cchHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhCcchh-hhhccHHHHHHHHhhcCchh
Confidence 2222221 111111 332 4788899999988 88888888755555544333332 22245789999999999999
Q ss_pred hHHHHHHHHHHHhhcCCC
Q 009636 385 DIKKEAAWAISNATSGGT 402 (530)
Q Consensus 385 ~v~~~a~~aL~nl~~~~~ 402 (530)
+|...++..+.+++...+
T Consensus 392 ~vvl~~L~lla~i~~s~~ 409 (675)
T KOG0212|consen 392 EVVLLALSLLASICSSSN 409 (675)
T ss_pred HHHHHHHHHHHHHhcCcc
Confidence 999999999999998543
No 79
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.54 E-value=6.7e-05 Score=67.91 Aligned_cols=270 Identities=14% Similarity=0.146 Sum_probs=177.3
Q ss_pred HHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCCh-hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHH
Q 009636 204 VPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF-DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI 282 (530)
Q Consensus 204 ~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~-~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~ 282 (530)
..++.++ .+.++.++..|+.-+..++.. +.... ......++.+.+++...++ ...++.++.|++....- ...++
T Consensus 6 ~elv~ll-~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l-~~~ll 80 (353)
T KOG2973|consen 6 VELVELL-HSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEEL-RKKLL 80 (353)
T ss_pred HHHHHHh-ccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHH-HHHHH
Confidence 4567777 788899999999988888876 22222 2235567778888877766 67888999999876543 34455
Q ss_pred HhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHh--h----cCchHHHHHhhcCCCch-hHHHHHHHHHHHH
Q 009636 283 EAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVI--E----YQALPCLLNLLSGNYKK-SIKKEACWTVSNI 355 (530)
Q Consensus 283 ~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~--~----~~~l~~L~~lL~~~~~~-~v~~~a~~~L~nl 355 (530)
+. ++..++..+.++.+.....++..++|++...+.....+. . .|++........++.+. .--...+.+++|+
T Consensus 81 ~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nl 159 (353)
T KOG2973|consen 81 QD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANL 159 (353)
T ss_pred HH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHH
Confidence 54 888999999999889999999999999986654433222 2 45666666666555332 1224556677777
Q ss_pred hcCCHHHHHHHHHhCcH--HHHHHHHhcCchhHHHH-HHHHHHHhhcCCCHHHHHHHHHc--CChHHHH-----------
Q 009636 356 TAGNREQIQAVIEANII--GPLVALLENAEFDIKKE-AAWAISNATSGGTHEQIKFLVIQ--GCIKPLC----------- 419 (530)
Q Consensus 356 ~~~~~~~~~~l~~~~~i--~~L~~ll~~~~~~v~~~-a~~aL~nl~~~~~~~~~~~l~~~--~~i~~L~----------- 419 (530)
+.. +..+..+.+...+ ..+.. +.+.+..+|+. .+.+|.|++... ..-..++.. .+++.|+
T Consensus 160 s~~-~~gR~l~~~~k~~p~~kll~-ft~~~s~vRr~GvagtlkN~cFd~--~~h~~lL~e~~~lLp~iLlPlagpee~sE 235 (353)
T KOG2973|consen 160 SQF-EAGRKLLLEPKRFPDQKLLP-FTSEDSQVRRGGVAGTLKNCCFDA--KLHEVLLDESINLLPAILLPLAGPEELSE 235 (353)
T ss_pred hhh-hhhhhHhcchhhhhHhhhhc-ccccchhhhccchHHHHHhhhccc--hhHHHHhcchHHHHHHHHhhcCCccccCH
Confidence 653 3344444443322 22222 33345556554 467777877632 222333221 1122211
Q ss_pred ----------hccC-----CCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHH-hcCCCHHHH
Q 009636 420 ----------DLLV-----CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESL-QTHDNAEIY 483 (530)
Q Consensus 420 ----------~lL~-----~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l-~~~~~~~v~ 483 (530)
++|. .+|+.++...+++|..++.-.. .++.+..-|+...+.++ .+-+++++.
T Consensus 236 Edm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~------------GRe~lR~kgvYpilRElhk~e~ded~~ 303 (353)
T KOG2973|consen 236 EDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRA------------GREVLRSKGVYPILRELHKWEEDEDIR 303 (353)
T ss_pred HHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhH------------hHHHHHhcCchHHHHHHhcCCCcHHHH
Confidence 2332 3678899999999988775443 38889999999999988 456999999
Q ss_pred HHHHHHHHHhCC
Q 009636 484 EKSVKLLETYWL 495 (530)
Q Consensus 484 ~~a~~il~~~~~ 495 (530)
+.+.++++-...
T Consensus 304 ~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 304 EACEQVVQMLVR 315 (353)
T ss_pred HHHHHHHHHHHh
Confidence 999999887765
No 80
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=8.1e-05 Score=77.51 Aligned_cols=306 Identities=13% Similarity=0.195 Sum_probs=200.1
Q ss_pred hhhcCCHHHHHHhhcC-CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC
Q 009636 69 AKKLENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASG 147 (530)
Q Consensus 69 ~~~~~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~ 147 (530)
...++.++-+...|.+ .++.+|..|+..+..+.+. .+.+..+...|++..|+.+|.+. |..+..++.+|..+++
T Consensus 1767 ~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan--~~Cv~~~a~~~vL~~LL~lLHS~--PS~R~~vL~vLYAL~S- 1841 (2235)
T KOG1789|consen 1767 ILLIGNFPLLITYLRCRKHPKLQILALQVILLATAN--KECVTDLATCNVLTTLLTLLHSQ--PSMRARVLDVLYALSS- 1841 (2235)
T ss_pred hhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc--cHHHHHHHhhhHHHHHHHHHhcC--hHHHHHHHHHHHHHhc-
Confidence 3455677888888874 7788999999998877655 68888999999999999999875 6899999999999999
Q ss_pred ChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCC---chhhhhHhh----------cCChHHHHHhhc-C
Q 009636 148 TSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDS---PRCRDLVLS----------QGGLVPLLAQLN-G 212 (530)
Q Consensus 148 ~~~~~~~~~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~---~~~~~~i~~----------~~~i~~Ll~ll~-~ 212 (530)
+++......+.|++..+..++.. .++..+.+++..++.+..+. |..+-.+++ .+.-...+..+. .
T Consensus 1842 ~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T 1921 (2235)
T KOG1789|consen 1842 NGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFEST 1921 (2235)
T ss_pred CcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhcc
Confidence 67777777788888888877654 67889999999999997653 222111111 011123333332 1
Q ss_pred CCchh------HHHHHHHHhhhhcc----CC---CC--------------------------------------CChhhh
Q 009636 213 QPKLS------MLRNATWTLSNFCR----GK---PQ--------------------------------------PPFDQV 241 (530)
Q Consensus 213 ~~~~~------~~~~a~~~L~~L~~----~~---~~--------------------------------------~~~~~~ 241 (530)
+.+++ .+......+..+.. .. +. ....+.
T Consensus 1922 ~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL 2001 (2235)
T KOG1789|consen 1922 SENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFL 2001 (2235)
T ss_pred CCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHH
Confidence 11221 22222222222211 00 00 001122
Q ss_pred hchHHHHHHhhcCCCh--hHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchh
Q 009636 242 SPALPALAHLIHSNDD--EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ 319 (530)
Q Consensus 242 ~~~l~~L~~ll~~~d~--~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~ 319 (530)
.+++..+..++..+.+ ....-...++..+....+.....+-..|.+|.++..+...+..+-..|++.|..++. +...
T Consensus 2002 ~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lse-n~~C 2080 (2235)
T KOG1789|consen 2002 TELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSE-NQFC 2080 (2235)
T ss_pred HHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhh-ccHH
Confidence 4445555566654432 222333334444444555555555566999999999998888888999999999987 4455
Q ss_pred hHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHhCcHHHHHHHHhcC
Q 009636 320 TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQAVIEANIIGPLVALLENA 382 (530)
Q Consensus 320 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~ 382 (530)
.+.+.....+..++..+... +...--||.+|..+.. ...+.+...++.|++|.|+.+|+..
T Consensus 2081 ~~AMA~l~~i~~~m~~mkK~--~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2081 CDAMAQLPCIDGIMKSMKKQ--PSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred HHHHhccccchhhHHHHHhc--chHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccc
Confidence 56666666666677777653 3445577888887765 4456666777899999999999764
No 81
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.50 E-value=1.2e-05 Score=78.87 Aligned_cols=337 Identities=14% Similarity=0.130 Sum_probs=207.9
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC--hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhh
Q 009636 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGT--SEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194 (530)
Q Consensus 117 ~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~--~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~ 194 (530)
++..++.+|.+.. |.++..|+...+.++.-- ....+.+...| ..|-..|....+++.-..+.++..|..... ++
T Consensus 605 ivStiL~~L~~k~-p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~sv~~-~~ 680 (975)
T COG5181 605 IVSTILKLLRSKP-PDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYPEVLGSILKAICSIYSVHR-FR 680 (975)
T ss_pred HHHHHHHHhcCCC-ccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHhhhhc-cc
Confidence 4556677888887 899999998877766411 11223333334 235566677788887777777766653221 11
Q ss_pred hh-HhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCC-ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhcc
Q 009636 195 DL-VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP-PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD 272 (530)
Q Consensus 195 ~~-i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~ 272 (530)
.. ---.|++|.|..+| .+....+..+....+..+|...|.. .......+.--|+..|.+.+.+++.+|..++++++.
T Consensus 681 ~mqpPi~~ilP~ltPIL-rnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ 759 (975)
T COG5181 681 SMQPPISGILPSLTPIL-RNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISR 759 (975)
T ss_pred ccCCchhhccccccHhh-hhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence 11 01356889999999 7888999999999999999887542 222334455567888889999999999999999875
Q ss_pred CChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHH
Q 009636 273 GTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTV 352 (530)
Q Consensus 273 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L 352 (530)
.-. -.+++..|+.-|+..+-..+....-+++-.+..+.. ..++|.|+.=...+ +..|+.-...++
T Consensus 760 aiG-------PqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgp-------fsVlP~lm~dY~TP-e~nVQnGvLkam 824 (975)
T COG5181 760 AIG-------PQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGP-------FSVLPTLMSDYETP-EANVQNGVLKAM 824 (975)
T ss_pred hcC-------HHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc-------hhhHHHHHhcccCc-hhHHHHhHHHHH
Confidence 421 113455555555555444444444444444432221 23566666555556 667787777777
Q ss_pred HHHhcCCHH-HHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHH-HHHHHHHcCChHHHHhccCCCChHHH
Q 009636 353 SNITAGNRE-QIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHE-QIKFLVIQGCIKPLCDLLVCPDPRIV 430 (530)
Q Consensus 353 ~nl~~~~~~-~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~-~~~~l~~~~~i~~L~~lL~~~~~~~~ 430 (530)
+-+...... ...++ ..+.|.|-+.|.+.|+.-|..|...+.+++.++.-. ....++ .++..|..-+-.+.|.++
T Consensus 825 ~fmFeyig~~s~dYv--y~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~I--HLlNllwpNIle~sPhvi 900 (975)
T COG5181 825 CFMFEYIGQASLDYV--YSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAI--HLLNLLWPNILEPSPHVI 900 (975)
T ss_pred HHHHHHHHHHHHHHH--HHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHH--HHHHHhhhhccCCCcHHH
Confidence 776542111 12222 236677777888889999999999999999875211 011111 112222222335778888
Q ss_pred HHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009636 431 TVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL 495 (530)
Q Consensus 431 ~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~ 495 (530)
....+++..+...-... -....+..=.-|++..|++..-...+..+-
T Consensus 901 ~~~~Eg~e~~~~~lg~g------------------~~m~Yv~qGLFHPs~~VRk~ywtvyn~myv 947 (975)
T COG5181 901 QSFDEGMESFATVLGSG------------------AMMKYVQQGLFHPSSTVRKRYWTVYNIMYV 947 (975)
T ss_pred HHHHHHHHHHHHHhccH------------------HHHHHHHHhccCchHHHHHHHHHHHhhhhh
Confidence 87777776665432210 012345555679999999888777776543
No 82
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.49 E-value=1e-06 Score=84.96 Aligned_cols=282 Identities=17% Similarity=0.242 Sum_probs=188.8
Q ss_pred HHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCC
Q 009636 111 EVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS 190 (530)
Q Consensus 111 ~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~ 190 (530)
.+.+..+++.|+++|+.++ ..+..-+...++|..-..+.....+...|++..|+.++.+.+..++....|.+..+..++
T Consensus 426 gL~d~~I~elLi~~Ls~Pe-imi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmync 504 (743)
T COG5369 426 GLLDYPIVELLIDALSNPE-IMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNC 504 (743)
T ss_pred hccccchHHHHHHHhcCcc-ceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcC
Confidence 3445678899999999877 677777888899988877888888999999999999999989999999999999998665
Q ss_pred chh-hhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCC-C-Chhhh------hchHHHHHHhhcCCChhHHH
Q 009636 191 PRC-RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ-P-PFDQV------SPALPALAHLIHSNDDEVLT 261 (530)
Q Consensus 191 ~~~-~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~-~-~~~~~------~~~l~~L~~ll~~~d~~v~~ 261 (530)
... +-..+..-++..++.+. .++.-.++..++..|.|+..+... . ..... .-+...|++.++..+|-...
T Consensus 505 q~~ekf~~Lakig~~kvl~~~-NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~ 583 (743)
T COG5369 505 QKNEKFKFLAKIGVEKVLSYT-NDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEIL 583 (743)
T ss_pred cchhhhhhHHhcCHHHHHHHh-cCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhh
Confidence 432 33445556788899988 788899999999999999875422 1 11111 22455667777777776666
Q ss_pred HHHHHHHHhccCChHHHHHHHH-hCcHHHHHHhhCC-----------CCchhHHHHHHHHhHhhcCCchhhHHHhhcCch
Q 009636 262 DACWALSYLSDGTNDKIQAVIE-AGVFPRLAEFLMH-----------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQAL 329 (530)
Q Consensus 262 ~a~~~l~~l~~~~~~~~~~~~~-~~~l~~L~~lL~~-----------~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l 329 (530)
..+..+.+++..++...+.+.+ ...+..+..+|.. ....+..+-..+..++....+.....+.-.
T Consensus 584 ~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~~d~f~r~~~~~--- 660 (743)
T COG5369 584 EGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLSENSDKFKRLVLTT--- 660 (743)
T ss_pred hhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeecccccccccccceecC---
Confidence 6788887777665544443332 3444444444321 122333344444444444333322222210
Q ss_pred HHHHHhhcC--CCchhHHHHHHHHHHHHhc---C------CHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHh
Q 009636 330 PCLLNLLSG--NYKKSIKKEACWTVSNITA---G------NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNA 397 (530)
Q Consensus 330 ~~L~~lL~~--~~~~~v~~~a~~~L~nl~~---~------~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 397 (530)
|.+-.+=.. ..+.++-.+..|.+.|+.- + +.+.++.+.+.|+-+.|..+...+++.||..+-.+|.|+
T Consensus 661 p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl~vrek~~taL~~l 739 (743)
T COG5369 661 PHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDSLIVREKIGTALENL 739 (743)
T ss_pred CCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCcHHHHHHHHHHHHhh
Confidence 111111111 1134577788888888653 2 236677888888888888888888899999999999887
No 83
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=0.00047 Score=70.13 Aligned_cols=367 Identities=14% Similarity=0.147 Sum_probs=225.9
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009636 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 153 (530)
.-..|..+|.|+.......|+..|..+.... ..+ +...|.+|+...+.+ .+++...---|...+...++..
T Consensus 36 ~~~dL~~lLdSnkd~~KleAmKRIia~iA~G--~dv-----S~~Fp~VVKNVaskn-~EVKkLVyvYLlrYAEeqpdLA- 106 (968)
T KOG1060|consen 36 RHDDLKQLLDSNKDSLKLEAMKRIIALIAKG--KDV-----SLLFPAVVKNVASKN-IEVKKLVYVYLLRYAEEQPDLA- 106 (968)
T ss_pred ChHHHHHHHhccccHHHHHHHHHHHHHHhcC--CcH-----HHHHHHHHHHhhccC-HHHHHHHHHHHHHHhhcCCCce-
Confidence 3467888999998899999998887776553 223 235888999999888 8999988888888887554432
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC
Q 009636 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (530)
Q Consensus 154 ~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~ 233 (530)
+ =-|..+-+-|+++++.+|..|+++|+.|-.. ..... ++-++-+.. .+..+-+++.|+.++-.|-+-+
T Consensus 107 -L---LSIntfQk~L~DpN~LiRasALRvlSsIRvp--~IaPI-----~llAIk~~~-~D~s~yVRk~AA~AIpKLYsLd 174 (968)
T KOG1060|consen 107 -L---LSINTFQKALKDPNQLIRASALRVLSSIRVP--MIAPI-----MLLAIKKAV-TDPSPYVRKTAAHAIPKLYSLD 174 (968)
T ss_pred -e---eeHHHHHhhhcCCcHHHHHHHHHHHHhcchh--hHHHH-----HHHHHHHHh-cCCcHHHHHHHHHhhHHHhcCC
Confidence 1 2378899999999999999999998876211 11001 111222233 7788999999999999887765
Q ss_pred CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhh
Q 009636 234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIV 313 (530)
Q Consensus 234 ~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~ 313 (530)
+... ..++..+-.+|...++.|.-.|+.++-.+|-..-+.+. +-..++..+|.+-+.--+..++.+|...+
T Consensus 175 ~e~k----~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIH-----knyrklC~ll~dvdeWgQvvlI~mL~RYA 245 (968)
T KOG1060|consen 175 PEQK----DQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIH-----KNYRKLCRLLPDVDEWGQVVLINMLTRYA 245 (968)
T ss_pred hhhH----HHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhh-----HHHHHHHhhccchhhhhHHHHHHHHHHHH
Confidence 4332 25566677788888999999999998888754333222 44566777776644444555555555554
Q ss_pred cCC---chh----------------------hHHHhhc---CchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 009636 314 TGD---DMQ----------------------TQCVIEY---QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQA 365 (530)
Q Consensus 314 ~~~---~~~----------------------~~~~~~~---~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 365 (530)
+.. +.. .....+. -++...-.+|.+. ++.|...+|.+...++-.+ +.
T Consensus 246 R~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~-n~sVVmA~aql~y~lAP~~--~~-- 320 (968)
T KOG1060|consen 246 RHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSR-NPSVVMAVAQLFYHLAPKN--QV-- 320 (968)
T ss_pred HhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcC-CcHHHHHHHhHHHhhCCHH--HH--
Confidence 311 100 0000011 1234444566666 7778888887777776432 11
Q ss_pred HHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCC----------------CHHHHHH--------HHHcC----ChHH
Q 009636 366 VIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG----------------THEQIKF--------LVIQG----CIKP 417 (530)
Q Consensus 366 l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~----------------~~~~~~~--------l~~~~----~i~~ 417 (530)
..+++.|+++|.+ +..+|.-.+..+..++... ++.+++. |.... ++.-
T Consensus 321 ---~~i~kaLvrLLrs-~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE 396 (968)
T KOG1060|consen 321 ---TKIAKALVRLLRS-NREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRE 396 (968)
T ss_pred ---HHHHHHHHHHHhc-CCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHH
Confidence 2456778887765 3466666666666555422 2222221 12111 2334
Q ss_pred HHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009636 418 LCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL 495 (530)
Q Consensus 418 L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~ 495 (530)
|..++.+.|..+...++.+|+......-... .-++..|..|..+.++-|-..|...|.+...
T Consensus 397 ~q~YI~s~d~~faa~aV~AiGrCA~~~~sv~----------------~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq 458 (968)
T KOG1060|consen 397 LQTYIKSSDRSFAAAAVKAIGRCASRIGSVT----------------DTCLNGLVQLLSSHDELVVAEAVVVIKRLLQ 458 (968)
T ss_pred HHHHHhcCchhHHHHHHHHHHHHHHhhCchh----------------hHHHHHHHHHHhcccchhHHHHHHHHHHHHh
Confidence 4455566777777777777777654432211 2234556666666666666666666665544
No 84
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.48 E-value=0.00019 Score=71.34 Aligned_cols=328 Identities=16% Similarity=0.202 Sum_probs=207.6
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009636 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 153 (530)
.+..+++.+....+.+|.....++.-+........... +.+.+.++++... ..-+..+++.+..+..+. ...
T Consensus 97 ~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~-----~l~~l~~ll~~~~-~~~~~~aa~~~ag~v~g~--~i~ 168 (569)
T KOG1242|consen 97 IIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEY-----VLELLLELLTSTK-IAERAGAAYGLAGLVNGL--GIE 168 (569)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHH-----HHHHHHHHhcccc-HHHHhhhhHHHHHHHcCc--HHh
Confidence 55777777778888999988888887654432233322 4677888888777 788899999999998854 334
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHH-HHHHHHHhhhCC-CchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009636 154 VVIDHGAVPIFVKLLYSPSDDVRE-QAVWALGNIAGD-SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (530)
Q Consensus 154 ~~~~~g~i~~L~~ll~~~~~~i~~-~a~~~L~nl~~~-~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~ 231 (530)
.+.+.+++..|...+.+.....+. .++.+.-..++. .+.....+.. .++.++... .+....++..+..+...+.+
T Consensus 169 ~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~--~lp~il~~~-~d~~~~Vr~Aa~~a~kai~~ 245 (569)
T KOG1242|consen 169 SLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVP--ILPSILTNF-GDKINKVREAAVEAAKAIMR 245 (569)
T ss_pred hhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHh--hHHHHHHHh-hccchhhhHHHHHHHHHHHH
Confidence 556678889999988774443333 233333222211 1211112221 445555555 56678888888777766655
Q ss_pred CCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhH
Q 009636 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311 (530)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~n 311 (530)
.-+. .....++|.++.-+..........++..++.++...+.... ..-..++|.+.+.|.+..+.++..+..++-+
T Consensus 246 ~~~~---~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs-~~lp~iiP~lsevl~DT~~evr~a~~~~l~~ 321 (569)
T KOG1242|consen 246 CLSA---YAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLS-LCLPDLIPVLSEVLWDTKPEVRKAGIETLLK 321 (569)
T ss_pred hcCc---chhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHH-HHHhHhhHHHHHHHccCCHHHHHHHHHHHHH
Confidence 4321 12234455555444444555667788888888877776555 4445899999999999999999999988888
Q ss_pred hhcCCch-hhHHH------------------------------hhcCchHHHHHhhc----CCCchhHHHHHHHHHHHHh
Q 009636 312 IVTGDDM-QTQCV------------------------------IEYQALPCLLNLLS----GNYKKSIKKEACWTVSNIT 356 (530)
Q Consensus 312 l~~~~~~-~~~~~------------------------------~~~~~l~~L~~lL~----~~~~~~v~~~a~~~L~nl~ 356 (530)
++.--+. .++.+ ++.-.+..++.+|+ .. +..+++.++.++.|+|
T Consensus 322 ~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eR-st~~kr~t~~IidNm~ 400 (569)
T KOG1242|consen 322 FGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAER-STSIKRKTAIIIDNMC 400 (569)
T ss_pred HHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhc-cchhhhhHHHHHHHHH
Confidence 7642210 01111 11223444444443 33 5678899999999999
Q ss_pred cC--CHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccC
Q 009636 357 AG--NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV 423 (530)
Q Consensus 357 ~~--~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~ 423 (530)
.- ++..+..++. .++|.|-..+.+..|++|..+..+|+.+...-... .+ .+.++.+...+.
T Consensus 401 ~LveDp~~lapfl~-~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~---~f--~d~~p~l~e~~~ 463 (569)
T KOG1242|consen 401 KLVEDPKDLAPFLP-SLLPGLKENLDDAVPEVRAVAARALGALLERLGEV---SF--DDLIPELSETLT 463 (569)
T ss_pred HhhcCHHHHhhhHH-HHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhh---cc--cccccHHHHhhc
Confidence 83 4554444443 36677777777778999999999998887642211 11 345555555553
No 85
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=0.00034 Score=70.40 Aligned_cols=255 Identities=16% Similarity=0.161 Sum_probs=183.0
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhh
Q 009636 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL 196 (530)
Q Consensus 117 ~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~ 196 (530)
+-+-++.+|+++. |-++..|+.++..+....++... ..+|.|..-|..+++.++..|+..++.||.-+|..-
T Consensus 145 La~Dv~tLL~ssk-pYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkny-- 216 (877)
T KOG1059|consen 145 LADDVFTLLNSSK-PYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNY-- 216 (877)
T ss_pred HHHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccc--
Confidence 4566788999888 89999999999999886666554 357999999999999999999999999998887531
Q ss_pred HhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCC-hhHHHHHHHHHH--HhccC
Q 009636 197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSND-DEVLTDACWALS--YLSDG 273 (530)
Q Consensus 197 i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d-~~v~~~a~~~l~--~l~~~ 273 (530)
...-|.+.+++.++.+.-+.-..+..+.+|+--.| .....+++.|..+++++. ..+...++.++. +++.+
T Consensus 217 ---L~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEP----RLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g 289 (877)
T KOG1059|consen 217 ---LQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEP----RLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSG 289 (877)
T ss_pred ---ccccHHHHHHHhccCCCeehHHHHHHHhhccccCc----hhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccC
Confidence 22567778888777777788888888888876543 334667888999988764 456666666653 34433
Q ss_pred ChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHH
Q 009636 274 TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS 353 (530)
Q Consensus 274 ~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~ 353 (530)
..+... .+. -.++.|-.++.+.++.++.-++.+++.++..++...+. .-..++.+|.+. ++.+|-.|...|-
T Consensus 290 ~~d~~a-siq-LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~Dk-D~SIRlrALdLl~ 361 (877)
T KOG1059|consen 290 MSDHSA-SIQ-LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDK-DESIRLRALDLLY 361 (877)
T ss_pred CCCcHH-HHH-HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccC-CchhHHHHHHHHH
Confidence 211111 111 24577778888999999999999999999877654432 245688899988 9999999999988
Q ss_pred HHhcCCHHHHHHHHHhCcHHHHHHHHhcCc-hhHHHHHHHHHHHhhcCC
Q 009636 354 NITAGNREQIQAVIEANIIGPLVALLENAE-FDIKKEAAWAISNATSGG 401 (530)
Q Consensus 354 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~-~~v~~~a~~aL~nl~~~~ 401 (530)
-+... +++.. ++..|+..+...+ ...|.+.+.-+..++...
T Consensus 362 gmVsk--kNl~e-----IVk~LM~~~~~ae~t~yrdell~~II~iCS~s 403 (877)
T KOG1059|consen 362 GMVSK--KNLME-----IVKTLMKHVEKAEGTNYRDELLTRIISICSQS 403 (877)
T ss_pred HHhhh--hhHHH-----HHHHHHHHHHhccchhHHHHHHHHHHHHhhhh
Confidence 88653 33333 3445555444333 366767666666666543
No 86
>PF05536 Neurochondrin: Neurochondrin
Probab=98.48 E-value=0.00022 Score=73.04 Aligned_cols=383 Identities=15% Similarity=0.112 Sum_probs=225.4
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCc--HHHHHHcCCHHHHHHhhcCCC------CHHHHHHHHHHHHHH
Q 009636 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPP--IEEVIRSGVVPRFVEFLLRED------YPQLQFEAAWALTNI 144 (530)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~--~~~~~~~g~v~~Lv~ll~~~~------~~~i~~~a~~~L~~l 144 (530)
..+.+.+..|++.+.+.++.++-.+.+++...+... .+.+.+.=..+.+-++|.++. ....+.-|+.+|..+
T Consensus 5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f 84 (543)
T PF05536_consen 5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF 84 (543)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 367889999999888899999999999988643222 234666655777888888732 256778888999999
Q ss_pred hcCChhhHHHHHhCCChHHHHHhhCCCCH-HHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHH
Q 009636 145 ASGTSEHTKVVIDHGAVPIFVKLLYSPSD-DVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNAT 223 (530)
Q Consensus 145 ~~~~~~~~~~~~~~g~i~~L~~ll~~~~~-~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~ 223 (530)
+. .++....---.+-||.|+..+.+.+. .+...|..+|..++ ..+.-+..+.+.|.++.|...+.+ .+.....++
T Consensus 85 ~~-~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~--~~~~~E~Al 160 (543)
T PF05536_consen 85 CR-DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN--QSFQMEIAL 160 (543)
T ss_pred cC-ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh--CcchHHHHH
Confidence 98 44443211112568999999988666 89999999999999 445578888999999999999844 556677788
Q ss_pred HHhhhhccCCCCC----ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHH-HHHHHH----hCcHHHHHHhh
Q 009636 224 WTLSNFCRGKPQP----PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDK-IQAVIE----AGVFPRLAEFL 294 (530)
Q Consensus 224 ~~L~~L~~~~~~~----~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~-~~~~~~----~~~l~~L~~lL 294 (530)
.++.+++...... .......+++.+...+...........+..+..+....+.. ...... ..+...+..+|
T Consensus 161 ~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL 240 (543)
T PF05536_consen 161 NLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDIL 240 (543)
T ss_pred HHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHH
Confidence 8888877654321 12223455666777776666666777788888876554211 111111 12334455555
Q ss_pred CCC-CchhHHHHHHHHhHhhcCCc--------h-----hhHHHhhcC------chHHHHHhhcCCCchhHH--HHHHH-H
Q 009636 295 MHP-SPSVLIPALRTVGNIVTGDD--------M-----QTQCVIEYQ------ALPCLLNLLSGNYKKSIK--KEACW-T 351 (530)
Q Consensus 295 ~~~-~~~~~~~al~~L~nl~~~~~--------~-----~~~~~~~~~------~l~~L~~lL~~~~~~~v~--~~a~~-~ 351 (530)
++. .+.-|.+++...+.+..... . ..-.+++.- .++.|....+.+..+... -.+|+ +
T Consensus 241 ~sr~~~~~R~~al~Laa~Ll~~~G~~wl~~~~~~~~~~F~~Llv~l~~VEir~~L~~L~~~~~~~~~~~~~~~L~~cf~i 320 (543)
T PF05536_consen 241 QSRLTPSQRDPALNLAASLLDLLGPEWLFADDKKSGKKFLLLLVNLACVEIRMSLEELLEQLNPEEYPEKQRLLASCFSI 320 (543)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHhChHhhcCCCCCCcccHHHHHHHHHHHHHHHHhHHhhhcCCchhhHHHHHHHHHHHHH
Confidence 553 45567777766666653211 0 111111111 111111112211001111 11222 1
Q ss_pred ----HHHHhc--------CCHHHHHHHHH--hCcHHHHHHHHhcC------chhHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 009636 352 ----VSNITA--------GNREQIQAVIE--ANIIGPLVALLENA------EFDIKKEAAWAISNATSGGTHEQIKFLVI 411 (530)
Q Consensus 352 ----L~nl~~--------~~~~~~~~l~~--~~~i~~L~~ll~~~------~~~v~~~a~~aL~nl~~~~~~~~~~~l~~ 411 (530)
+..++. -+++....+.. .+.+...+++|... ++..-..+..+|+......+....+.+
T Consensus 321 lE~~I~~l~~~~~~~~~~~~~~~l~kl~~~l~e~~~~vle~L~~~~d~~~~d~~~vlAsvR~L~~WLaEe~~~lr~~v-- 398 (543)
T PF05536_consen 321 LEHFIGYLVRSLEEESLDLDPDTLLKLRTSLSETFSAVLEYLRDVWDESQKDPDFVLASVRVLGAWLAEETSALRKEV-- 398 (543)
T ss_pred HHHHHHHHHhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhChHHHHHHH--
Confidence 122222 12334444432 34455555655432 333666778888888776554444443
Q ss_pred cCChHHHHhccCCCCh----------HHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHH
Q 009636 412 QGCIKPLCDLLVCPDP----------RIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIES 473 (530)
Q Consensus 412 ~~~i~~L~~lL~~~~~----------~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~ 473 (530)
.|.++.|+.+...... +.+...+=+|+.+.... ..+..+...||.+.+.+
T Consensus 399 ~~Ll~~ll~~~~~~~~~~~~~~~~~~d~~r~lLPaL~~lt~e~------------~gr~~l~~~~g~~~l~~ 458 (543)
T PF05536_consen 399 YGLLPFLLSLYRESFQEAEPAREGPLDFLRFLLPALCHLTAEE------------EGRKILLSNGGWKLLCD 458 (543)
T ss_pred HHHHHHHHHHHhhhhhhcccccccchhHHHHHHHHHhhhhccH------------HHHHHHHhCCcHHHHHH
Confidence 3778888888764322 24444455555544322 24777777888777654
No 87
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=6.3e-05 Score=68.51 Aligned_cols=318 Identities=14% Similarity=0.136 Sum_probs=204.2
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHH--HHhhcCCCCHHHHHHHHHHHHHHhcCChh
Q 009636 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRF--VEFLLREDYPQLQFEAAWALTNIASGTSE 150 (530)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~L--v~ll~~~~~~~i~~~a~~~L~~l~~~~~~ 150 (530)
+.++.++..+-.+|.++-..|...+..++.. ......+..+.....+ ..+-...+ .-.+......+..+.+-+++
T Consensus 128 eilklildcIggeddeVAkAAiesikrialf--paaleaiFeSellDdlhlrnlaakcn-diaRvRVleLIieifSiSpe 204 (524)
T KOG4413|consen 128 EILKLILDCIGGEDDEVAKAAIESIKRIALF--PAALEAIFESELLDDLHLRNLAAKCN-DIARVRVLELIIEIFSISPE 204 (524)
T ss_pred hHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--HHHHHHhcccccCChHHHhHHHhhhh-hHHHHHHHHHHHHHHhcCHH
Confidence 4678888888889999999999999988654 3445555565555443 33333334 57788888899999998899
Q ss_pred hHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCC-CchhHHHHHHHHhhh
Q 009636 151 HTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQ-PKLSMLRNATWTLSN 228 (530)
Q Consensus 151 ~~~~~~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~-~~~~~~~~a~~~L~~ 228 (530)
.......+|.+..|..-++. .+.-++..|+.....++.... .++.+.+.|.++.+.+++... .++--.-.++.....
T Consensus 205 saneckkSGLldlLeaElkGteDtLVianciElvteLaeteH-greflaQeglIdlicnIIsGadsdPfekfralmgfgk 283 (524)
T KOG4413|consen 205 SANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEH-GREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGK 283 (524)
T ss_pred HHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhh-hhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHH
Confidence 99999999999999888877 666778889988888885544 577888899999999888522 233222223444443
Q ss_pred hccCCC--CCCh----hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCc--HHHHH-HhhCCCCc
Q 009636 229 FCRGKP--QPPF----DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV--FPRLA-EFLMHPSP 299 (530)
Q Consensus 229 L~~~~~--~~~~----~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~--l~~L~-~lL~~~~~ 299 (530)
+..... .... ......+.....+++.+|++.+..++.+++.+.++.+. .+.+.+.|- ...++ .....+..
T Consensus 284 ffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteG-adlllkTgppaaehllarafdqnah 362 (524)
T KOG4413|consen 284 FFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEG-ADLLLKTGPPAAEHLLARAFDQNAH 362 (524)
T ss_pred HhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcch-hHHHhccCChHHHHHHHHHhccccc
Confidence 333221 1011 11122333445667788999999999999999877654 354555543 33333 33344445
Q ss_pred hhHHHHHHHHhHhhcCC---chh----------hHHHhh-------cCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCC
Q 009636 300 SVLIPALRTVGNIVTGD---DMQ----------TQCVIE-------YQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN 359 (530)
Q Consensus 300 ~~~~~al~~L~nl~~~~---~~~----------~~~~~~-------~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~ 359 (530)
.-+..++++|.+++... +++ +..+.+ ..-+..+..+++.+ .++++-.+..++..++...
T Consensus 363 akqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQp-fpEihcAalktfTAiaaqP 441 (524)
T KOG4413|consen 363 AKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQP-FPEIHCAALKTFTAIAAQP 441 (524)
T ss_pred chHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCC-ChhhHHHHHHHHHHHHcCc
Confidence 55778888998887531 111 111111 13456677788887 8999999999999998765
Q ss_pred HHHHHHHHHhCcHHHHHHHHhcC---chhHHHHHHHHHHH
Q 009636 360 REQIQAVIEANIIGPLVALLENA---EFDIKKEAAWAISN 396 (530)
Q Consensus 360 ~~~~~~l~~~~~i~~L~~ll~~~---~~~v~~~a~~aL~n 396 (530)
=.....+-..+++..+.+.-... ..+.+.+++.++.+
T Consensus 442 WalkeifakeefieiVtDastEhaKaakdAkYeccKAiae 481 (524)
T KOG4413|consen 442 WALKEIFAKEEFIEIVTDASTEHAKAAKDAKYECCKAIAE 481 (524)
T ss_pred HHHHHHhcCccceeeecccchhhHHHHHHHHHHHHHHHHH
Confidence 44444444566666655533221 22344444544443
No 88
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.41 E-value=0.00012 Score=71.97 Aligned_cols=242 Identities=17% Similarity=0.059 Sum_probs=164.2
Q ss_pred CHHHHHHhhc-CCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009636 74 NLPVMVAGVW-SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (530)
Q Consensus 74 ~l~~l~~~l~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (530)
.++.++..+. .+++++...++..+.. .. .+ .++..|+..|.+.+ +.++..++.+|+.+-.
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~---~~-~~--------~~~~~L~~~L~d~~-~~vr~aaa~ALg~i~~------ 115 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLA---QE-DA--------LDLRSVLAVLQAGP-EGLCAGIQAALGWLGG------ 115 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhc---cC-Ch--------HHHHHHHHHhcCCC-HHHHHHHHHHHhcCCc------
Confidence 5677777774 4556666655554432 11 11 13778888888877 7899999988876544
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009636 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (530)
Q Consensus 153 ~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~ 232 (530)
....+.|+.++.+.++.++..++.+++..- ....+.+...+ ++.+..++..++.++..+...
T Consensus 116 -----~~a~~~L~~~L~~~~p~vR~aal~al~~r~------------~~~~~~L~~~L-~d~d~~Vra~A~raLG~l~~~ 177 (410)
T TIGR02270 116 -----RQAEPWLEPLLAASEPPGRAIGLAALGAHR------------HDPGPALEAAL-THEDALVRAAALRALGELPRR 177 (410)
T ss_pred -----hHHHHHHHHHhcCCChHHHHHHHHHHHhhc------------cChHHHHHHHh-cCCCHHHHHHHHHHHHhhccc
Confidence 234577888888888888888887776621 11345677778 688899999999999887654
Q ss_pred CCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHh
Q 009636 233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312 (530)
Q Consensus 233 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl 312 (530)
..++.|...+.+.++.|+..+++++..+.. .. .+..+..+...........+..+++..
T Consensus 178 ----------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~~---------A~~~l~~~~~~~g~~~~~~l~~~lal~ 236 (410)
T TIGR02270 178 ----------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--RL---------AWGVCRRFQVLEGGPHRQRLLVLLAVA 236 (410)
T ss_pred ----------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--Hh---------HHHHHHHHHhccCccHHHHHHHHHHhC
Confidence 345667777888899999999998877643 21 123344433333333333333333333
Q ss_pred hcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHH
Q 009636 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAW 392 (530)
Q Consensus 313 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~ 392 (530)
+.+ .+++.|..+++.+ .++..++++++.+-.. ..++.|+..+... .++..|..
T Consensus 237 --~~~---------~a~~~L~~ll~d~---~vr~~a~~AlG~lg~p-----------~av~~L~~~l~d~--~~aR~A~e 289 (410)
T TIGR02270 237 --GGP---------DAQAWLRELLQAA---ATRREALRAVGLVGDV-----------EAAPWCLEAMREP--PWARLAGE 289 (410)
T ss_pred --Cch---------hHHHHHHHHhcCh---hhHHHHHHHHHHcCCc-----------chHHHHHHHhcCc--HHHHHHHH
Confidence 111 4678888888865 4999999999987432 3678888888644 49999999
Q ss_pred HHHHhhcC
Q 009636 393 AISNATSG 400 (530)
Q Consensus 393 aL~nl~~~ 400 (530)
++..|+.-
T Consensus 290 A~~~ItG~ 297 (410)
T TIGR02270 290 AFSLITGM 297 (410)
T ss_pred HHHHhhCC
Confidence 99999874
No 89
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=0.00031 Score=71.32 Aligned_cols=297 Identities=15% Similarity=0.158 Sum_probs=172.4
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 009636 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV 154 (530)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~ 154 (530)
+..+=+.|+++++.++-.|++.+..+ . -+.+.-+ ++-.+-++..+.. +-+|..|+.++..+-+-.++....
T Consensus 110 IntfQk~L~DpN~LiRasALRvlSsI---R-vp~IaPI----~llAIk~~~~D~s-~yVRk~AA~AIpKLYsLd~e~k~q 180 (968)
T KOG1060|consen 110 INTFQKALKDPNQLIRASALRVLSSI---R-VPMIAPI----MLLAIKKAVTDPS-PYVRKTAAHAIPKLYSLDPEQKDQ 180 (968)
T ss_pred HHHHHhhhcCCcHHHHHHHHHHHHhc---c-hhhHHHH----HHHHHHHHhcCCc-HHHHHHHHHhhHHHhcCChhhHHH
Confidence 34444455556666665555544422 1 1111111 1223334555666 889999999999998877777765
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC-
Q 009636 155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK- 233 (530)
Q Consensus 155 ~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~- 233 (530)
+ +..+-.+|.+.++.+.-.|+.++-.+|-+.-+ . -.+-...+.+++ .+-+.--+..++..|...|+..
T Consensus 181 L-----~e~I~~LLaD~splVvgsAv~AF~evCPerld---L--IHknyrklC~ll-~dvdeWgQvvlI~mL~RYAR~~l 249 (968)
T KOG1060|consen 181 L-----EEVIKKLLADRSPLVVGSAVMAFEEVCPERLD---L--IHKNYRKLCRLL-PDVDEWGQVVLINMLTRYARHQL 249 (968)
T ss_pred H-----HHHHHHHhcCCCCcchhHHHHHHHHhchhHHH---H--hhHHHHHHHhhc-cchhhhhHHHHHHHHHHHHHhcC
Confidence 5 35566677778888888888888888754322 1 122345566666 4444444444555555555443
Q ss_pred CCC-------------------------C---hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhC
Q 009636 234 PQP-------------------------P---FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAG 285 (530)
Q Consensus 234 ~~~-------------------------~---~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~ 285 (530)
+.+ + .....-++...-.++.+.++.+...++.++.+++-..+ .. +
T Consensus 250 ~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~--~~-----~ 322 (968)
T KOG1060|consen 250 PDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQ--VT-----K 322 (968)
T ss_pred CCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHH--HH-----H
Confidence 111 0 11123345555667888899999999999999874431 22 4
Q ss_pred cHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhH----------------HHh---------h----cCchHHHHHhh
Q 009636 286 VFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQ----------------CVI---------E----YQALPCLLNLL 336 (530)
Q Consensus 286 ~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~----------------~~~---------~----~~~l~~L~~lL 336 (530)
++..|+.+|.+. ..++.-.+..+..++...+.... .++ + ..+++-+..++
T Consensus 323 i~kaLvrLLrs~-~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI 401 (968)
T KOG1060|consen 323 IAKALVRLLRSN-REVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYI 401 (968)
T ss_pred HHHHHHHHHhcC-CcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHH
Confidence 456677776543 23444455555554432221110 000 1 12344555555
Q ss_pred cCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHH
Q 009636 337 SGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQ 405 (530)
Q Consensus 337 ~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~ 405 (530)
.+. +..+...|..+|+.++..... +...++.-|+.++.+.+..|..+++..+..+......++
T Consensus 402 ~s~-d~~faa~aV~AiGrCA~~~~s-----v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h 464 (968)
T KOG1060|consen 402 KSS-DRSFAAAAVKAIGRCASRIGS-----VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEH 464 (968)
T ss_pred hcC-chhHHHHHHHHHHHHHHhhCc-----hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHH
Confidence 666 556777777788877653222 123456778888888888888888888888887654444
No 90
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.40 E-value=6.8e-06 Score=64.66 Aligned_cols=153 Identities=10% Similarity=0.034 Sum_probs=123.7
Q ss_pred chHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHH
Q 009636 328 ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIK 407 (530)
Q Consensus 328 ~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~ 407 (530)
.+..|+.-+....+.+.+.....-|.|++. +|.+...+.+.+++..++..+...+..+..-++.+|||++. ++...+
T Consensus 17 Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~--d~~n~~ 93 (173)
T KOG4646|consen 17 YLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL--DKTNAK 93 (173)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc--ChHHHH
Confidence 345555555555477888888888888854 57778889999999999999999999999999999999998 667888
Q ss_pred HHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHH
Q 009636 408 FLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSV 487 (530)
Q Consensus 408 ~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~ 487 (530)
.+.+.+.++.++..++++...++..++.++..+...+.. .+..+-..-.++.++....+.+.+.+..|.
T Consensus 94 ~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt-----------~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~ 162 (173)
T KOG4646|consen 94 FIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERT-----------ERDELLSPAVVRTVQRWRESKSHDERNLAS 162 (173)
T ss_pred HHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccc-----------hhHHhccHHHHHHHHHHHHHhhHHHHHHHH
Confidence 899999999999999999988888888887766544433 355666667788888888888888888888
Q ss_pred HHHHHhC
Q 009636 488 KLLETYW 494 (530)
Q Consensus 488 ~il~~~~ 494 (530)
..++++-
T Consensus 163 ~fl~~~~ 169 (173)
T KOG4646|consen 163 AFLDKHV 169 (173)
T ss_pred HHHHhhc
Confidence 8888753
No 91
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.37 E-value=8.4e-05 Score=72.16 Aligned_cols=314 Identities=18% Similarity=0.152 Sum_probs=193.9
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCChhhHHH
Q 009636 76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTKV 154 (530)
Q Consensus 76 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~-~~~i~~~a~~~L~~l~~~~~~~~~~ 154 (530)
+.+...+-+++.+++..|.+.+|.++.. ....+.+.+.++--.++.-|..++ +..-+.+|++.+..+..-.. ..+
T Consensus 28 ~~i~~~lL~~~~~vraa~yRilRy~i~d--~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~-~~~- 103 (371)
T PF14664_consen 28 ERIQCMLLSDSKEVRAAGYRILRYLISD--EESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKK-GPK- 103 (371)
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHHHcC--HHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcC-Ccc-
Confidence 4444455566699999999999999876 567888888886666667776543 35668899998888877321 111
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCC
Q 009636 155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP 234 (530)
Q Consensus 155 ~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~ 234 (530)
.+..|++..++.+..+++..++..|+.+|+.++-.+|. .+...|++..|++.+.+ ...++...++.++..+...+.
T Consensus 104 ~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d-~~~~~~~~l~~~lL~lLd~p~ 179 (371)
T PF14664_consen 104 EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALID-GSFSISESLLDTLLYLLDSPR 179 (371)
T ss_pred cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHh-ccHhHHHHHHHHHHHHhCCcc
Confidence 12457889999999999999999999999999988774 67889999999999954 444588889999999988865
Q ss_pred CCChhhhhchHHHHHHh-hcC------CCh--hHHHHHHHHHHHhccCChHHHHHHHH-hCcHHHHHHhhCCCCchhHHH
Q 009636 235 QPPFDQVSPALPALAHL-IHS------NDD--EVLTDACWALSYLSDGTNDKIQAVIE-AGVFPRLAEFLMHPSPSVLIP 304 (530)
Q Consensus 235 ~~~~~~~~~~l~~L~~l-l~~------~d~--~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~~~~~ 304 (530)
........--+..++.- ... ++. +....+..++..+...=......... ...+..|+..|..+++.++..
T Consensus 180 tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~ 259 (371)
T PF14664_consen 180 TRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKA 259 (371)
T ss_pred hhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHH
Confidence 44433332223322222 221 122 34455555555554332222111111 146788999999999999999
Q ss_pred HHHHHhHhhcCCc-hhhHHH------hhcCchHHHHHhh---cCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHhCcHH
Q 009636 305 ALRTVGNIVTGDD-MQTQCV------IEYQALPCLLNLL---SGNYKKSIKKEACWTVSNITAG-NREQIQAVIEANIIG 373 (530)
Q Consensus 305 al~~L~nl~~~~~-~~~~~~------~~~~~l~~L~~lL---~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~ 373 (530)
.+..+..+..-.. ...... ...|-...-..+. ... .......+ .--.++..+ ..-....+++.|+++
T Consensus 260 Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~-~~~~~~~~-~~~~~l~~~y~aLll~ili~~gL~~ 337 (371)
T PF14664_consen 260 ILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEA-KSILPHRS-SKRPNLVNHYLALLLAILIEAGLLE 337 (371)
T ss_pred HHHHHHHHHCCCCCCcccchhhcccccccccccchhhhccccccc-ccccCccc-cccccHHHHHHHHHHHHHHHcChHH
Confidence 9988888865322 111111 1111110000000 000 00000000 000011110 011223466899999
Q ss_pred HHHHHHhcC-chhHHHHHHHHHHHhhc
Q 009636 374 PLVALLENA-EFDIKKEAAWAISNATS 399 (530)
Q Consensus 374 ~L~~ll~~~-~~~v~~~a~~aL~nl~~ 399 (530)
.|++++.+. +..+...|...|+.+..
T Consensus 338 ~L~~li~~~~d~~l~~KAtlLL~elL~ 364 (371)
T PF14664_consen 338 ALVELIESSEDSSLSRKATLLLGELLH 364 (371)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 999999887 88899999988887754
No 92
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.35 E-value=0.00017 Score=65.40 Aligned_cols=272 Identities=15% Similarity=0.205 Sum_probs=170.0
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHH--HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009636 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVI--RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~--~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~ 151 (530)
.+..++.++.+.+|.++..|+..+..+... ..+.+. +...++.+.+++...+ + ...|+.+|.|++. ....
T Consensus 4 ~l~elv~ll~~~sP~v~~~AV~~l~~lt~~----~~~~~~~~~~~~lk~l~qL~~~~~-~--~~~a~~alVnlsq-~~~l 75 (353)
T KOG2973|consen 4 ELVELVELLHSLSPPVRKAAVEHLLGLTGR----GLQSLSKYSEALLKDLTQLLKDLD-P--AEPAATALVNLSQ-KEEL 75 (353)
T ss_pred HHHHHHHHhccCChHHHHHHHHHHhhcccc----chhhhccchhhhHHHHHHHccCcc-c--ccHHHHHHHHHHh-hHHH
Confidence 346789999999999999999888777543 222111 2346788899988776 4 6779999999999 6777
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhc-----CChHHHHHhhcCCC-c-hhHHHHHHH
Q 009636 152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQ-----GGLVPLLAQLNGQP-K-LSMLRNATW 224 (530)
Q Consensus 152 ~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~-----~~i~~Ll~ll~~~~-~-~~~~~~a~~ 224 (530)
++.+.+. ++..+...+..+...+.+..+.+|+|++.+...+....... ..+..++....+.. + ..-..+...
T Consensus 76 ~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~ 154 (353)
T KOG2973|consen 76 RKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAP 154 (353)
T ss_pred HHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHH
Confidence 7777766 77777778777766788889999999998887665544322 23333333332222 2 234566777
Q ss_pred HhhhhccCCCCCChhhhhchHH--HHHHhhcCCChhHHH-HHHHHHHHhccCChHHHHHHHHh--CcHHHHH--------
Q 009636 225 TLSNFCRGKPQPPFDQVSPALP--ALAHLIHSNDDEVLT-DACWALSYLSDGTNDKIQAVIEA--GVFPRLA-------- 291 (530)
Q Consensus 225 ~L~~L~~~~~~~~~~~~~~~l~--~L~~ll~~~d~~v~~-~a~~~l~~l~~~~~~~~~~~~~~--~~l~~L~-------- 291 (530)
+++||++.............+| .+..+-. .+..++. ..+.+|.|++...... ..+++. .+++.|+
T Consensus 155 vf~nls~~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h-~~lL~e~~~lLp~iLlPlagpee 232 (353)
T KOG2973|consen 155 VFANLSQFEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLH-EVLLDESINLLPAILLPLAGPEE 232 (353)
T ss_pred HHHHHhhhhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhH-HHHhcchHHHHHHHHhhcCCccc
Confidence 8888888765554444433333 3444433 4555543 3667777776544322 122221 1222222
Q ss_pred -------------HhhC-----CCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHH
Q 009636 292 -------------EFLM-----HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS 353 (530)
Q Consensus 292 -------------~lL~-----~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~ 353 (530)
++|. .+++.++...+.+|--++. ....++.+...|+.+.+-.+-+...++++++.+-....
T Consensus 233 ~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLca-T~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq 311 (353)
T KOG2973|consen 233 LSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCA-TRAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQ 311 (353)
T ss_pred cCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHh-hhHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 2222 1356788888888888886 44455667777888877777776645666554444444
Q ss_pred HHhc
Q 009636 354 NITA 357 (530)
Q Consensus 354 nl~~ 357 (530)
.+..
T Consensus 312 ~Lv~ 315 (353)
T KOG2973|consen 312 MLVR 315 (353)
T ss_pred HHHh
Confidence 3433
No 93
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.34 E-value=0.00022 Score=69.34 Aligned_cols=318 Identities=15% Similarity=0.075 Sum_probs=192.4
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcC-CCchhHHHHHHHHhhhhccCCCCCChh
Q 009636 161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG-QPKLSMLRNATWTLSNFCRGKPQPPFD 239 (530)
Q Consensus 161 i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~-~~~~~~~~~a~~~L~~L~~~~~~~~~~ 239 (530)
.+.+..++-+++.+++..+.+++..+..+... -..+.+.+.--.++.-+.. ..+..=+..|+..+..+...... ...
T Consensus 27 ~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~-l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~-~~~ 104 (371)
T PF14664_consen 27 GERIQCMLLSDSKEVRAAGYRILRYLISDEES-LQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKG-PKE 104 (371)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHH-HHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCC-ccc
Confidence 44444444445589999999999888877764 4455555544444555533 33455567888888888776422 223
Q ss_pred hhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchh
Q 009636 240 QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ 319 (530)
Q Consensus 240 ~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~ 319 (530)
.-.+++..++.+.++.++..+..++.+++.++-.+++ .+...|++..|...+.++...+....+.++..+.. .+..
T Consensus 105 ~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd-~p~t 180 (371)
T PF14664_consen 105 IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISESLLDTLLYLLD-SPRT 180 (371)
T ss_pred CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhC-Ccch
Confidence 4578889999999999999999999999999977764 47788999999999988766677888888888886 3444
Q ss_pred hHHHhhcCchHHHHHhhcCC------Cch--hHHHHHHHHHHHHhcCCHHHHHHHHH-hCcHHHHHHHHhcCchhHHHHH
Q 009636 320 TQCVIEYQALPCLLNLLSGN------YKK--SIKKEACWTVSNITAGNREQIQAVIE-ANIIGPLVALLENAEFDIKKEA 390 (530)
Q Consensus 320 ~~~~~~~~~l~~L~~lL~~~------~~~--~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a 390 (530)
++.+...--++.++.-+.+. .+. +.-..+..++..+...=+..+-...+ ...+..|+..|..+++++|...
T Consensus 181 R~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~I 260 (371)
T PF14664_consen 181 RKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAI 260 (371)
T ss_pred hhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHH
Confidence 44444333344444444332 022 22334445555554421111111111 1468889999999999999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHH------cCChHHHHhccC--CCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHh
Q 009636 391 AWAISNATSGGTHEQIKFLVI------QGCIKPLCDLLV--CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMI 462 (530)
Q Consensus 391 ~~aL~nl~~~~~~~~~~~l~~------~~~i~~L~~lL~--~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l 462 (530)
+..+..+..-..+.....+.. .|-...-.++.. .+.......--..-.+++...- --....|
T Consensus 261 ldll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~----------aLll~il 330 (371)
T PF14664_consen 261 LDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYL----------ALLLAIL 330 (371)
T ss_pred HHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHH----------HHHHHHH
Confidence 999999987554332222111 111100000000 0000000000000001111110 1135567
Q ss_pred hhhccHHHHHHHhcCC-CHHHHHHHHHHHHHhC
Q 009636 463 DDAEGLEKIESLQTHD-NAEIYEKSVKLLETYW 494 (530)
Q Consensus 463 ~~~~~~~~l~~l~~~~-~~~v~~~a~~il~~~~ 494 (530)
.++|.++.|.++.... ++.+..+|.-++.+++
T Consensus 331 i~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL 363 (371)
T PF14664_consen 331 IEAGLLEALVELIESSEDSSLSRKATLLLGELL 363 (371)
T ss_pred HHcChHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 7899999999987665 9999999999998765
No 94
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.33 E-value=0.00022 Score=70.08 Aligned_cols=244 Identities=17% Similarity=0.053 Sum_probs=168.2
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhh
Q 009636 116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD 195 (530)
Q Consensus 116 g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~ 195 (530)
..++.++..|....++.+...+++++..... +. .+..|+..|.+.++.++..++.+|+.+- .
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~--~~---------~~~~L~~~L~d~~~~vr~aaa~ALg~i~--~----- 115 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALLAQED--AL---------DLRSVLAVLQAGPEGLCAGIQAALGWLG--G----- 115 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHhccCC--hH---------HHHHHHHHhcCCCHHHHHHHHHHHhcCC--c-----
Confidence 3578888888544437777766666542211 11 2788999999888889999999998652 1
Q ss_pred hHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh
Q 009636 196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN 275 (530)
Q Consensus 196 ~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~ 275 (530)
....+.|+.++ .+.++.++..++.++.... ....+.+..++.+.++.++..++++++.+...
T Consensus 116 ----~~a~~~L~~~L-~~~~p~vR~aal~al~~r~-----------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~-- 177 (410)
T TIGR02270 116 ----RQAEPWLEPLL-AASEPPGRAIGLAALGAHR-----------HDPGPALEAALTHEDALVRAAALRALGELPRR-- 177 (410)
T ss_pred ----hHHHHHHHHHh-cCCChHHHHHHHHHHHhhc-----------cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc--
Confidence 12567788888 7778888888887766521 22356788888999999999999999997543
Q ss_pred HHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHH
Q 009636 276 DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI 355 (530)
Q Consensus 276 ~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl 355 (530)
..++.|...+.+.++.++..|+..++.+.. + ..+..+....... .......+..++...
T Consensus 178 ---------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~---------~A~~~l~~~~~~~-g~~~~~~l~~~lal~ 236 (410)
T TIGR02270 178 ---------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--R---------LAWGVCRRFQVLE-GGPHRQRLLVLLAVA 236 (410)
T ss_pred ---------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHhcc-CccHHHHHHHHHHhC
Confidence 344567778999999999999999977643 2 1234455533333 333333333344333
Q ss_pred hcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHH
Q 009636 356 TAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLE 435 (530)
Q Consensus 356 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~ 435 (530)
+.+ ..++.|..++.+.. ++..++++++.+-.. ..++.|+..+.... +...+-+
T Consensus 237 --~~~---------~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p------------~av~~L~~~l~d~~--~aR~A~e 289 (410)
T TIGR02270 237 --GGP---------DAQAWLRELLQAAA--TRREALRAVGLVGDV------------EAAPWCLEAMREPP--WARLAGE 289 (410)
T ss_pred --Cch---------hHHHHHHHHhcChh--hHHHHHHHHHHcCCc------------chHHHHHHHhcCcH--HHHHHHH
Confidence 222 36778888887654 999999999977553 35777777776443 8888899
Q ss_pred HHHHHHHh
Q 009636 436 GLENILKV 443 (530)
Q Consensus 436 ~l~~ll~~ 443 (530)
++..|.-.
T Consensus 290 A~~~ItG~ 297 (410)
T TIGR02270 290 AFSLITGM 297 (410)
T ss_pred HHHHhhCC
Confidence 88887643
No 95
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=0.0019 Score=65.09 Aligned_cols=327 Identities=17% Similarity=0.153 Sum_probs=193.0
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 009636 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV 154 (530)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~ 154 (530)
.-+-+++|.++--...+.+--.+.-++..+ .+..+. ++..+-+=|.+.+ +.....|+.+++|+.+ -+.+..
T Consensus 76 hmEaV~LLss~kysEKqIGYl~is~L~n~n-~dl~kl-----vin~iknDL~srn-~~fv~LAL~~I~niG~--re~~ea 146 (938)
T KOG1077|consen 76 HMEAVNLLSSNKYSEKQIGYLFISLLLNEN-SDLMKL-----VINSIKNDLSSRN-PTFVCLALHCIANIGS--REMAEA 146 (938)
T ss_pred hHHHHHHhhcCCccHHHHhHHHHHHHHhcc-hHHHHH-----HHHHHHhhhhcCC-cHHHHHHHHHHHhhcc--HhHHHH
Confidence 345566666654444444444444444332 222322 2344444455566 7888999999999886 444444
Q ss_pred HHhCCChHHHHHhhCC--CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009636 155 VIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (530)
Q Consensus 155 ~~~~g~i~~L~~ll~~--~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~ 232 (530)
+.. -|+ ++|.+ ..+-++..++.+|..|-...|. .+-..+....++.+| ++.+-.+...+...+..|+..
T Consensus 147 ~~~--DI~---KlLvS~~~~~~vkqkaALclL~L~r~spD---l~~~~~W~~riv~LL-~D~~~gv~ta~~sLi~~lvk~ 217 (938)
T KOG1077|consen 147 FAD--DIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPD---LVNPGEWAQRIVHLL-DDQHMGVVTAATSLIEALVKK 217 (938)
T ss_pred hhh--hhH---HHHhCCcchHHHHHHHHHHHHHHHhcCcc---ccChhhHHHHHHHHh-CccccceeeehHHHHHHHHHc
Confidence 431 233 55544 3356788888899888877664 333345678889999 666677777778888888776
Q ss_pred CCCCChhhhhchHHHHHHhhc-------------CCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC--
Q 009636 233 KPQPPFDQVSPALPALAHLIH-------------SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP-- 297 (530)
Q Consensus 233 ~~~~~~~~~~~~l~~L~~ll~-------------~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-- 297 (530)
.+..-.......+..|..... -+.|.++...++.|.++-...+.... ..-..+++.++...+..
T Consensus 218 ~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r-~~l~evl~~iLnk~~~~~~ 296 (938)
T KOG1077|consen 218 NPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTR-ARLNEVLERILNKAQEPPK 296 (938)
T ss_pred CCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHH-HHHHHHHHHHHhccccCcc
Confidence 543332223333333333221 13577888888888887432221111 11113444444444421
Q ss_pred --C---chhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcH
Q 009636 298 --S---PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANII 372 (530)
Q Consensus 298 --~---~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i 372 (530)
+ ....-..+.-.-+++..-+..-+.+ ...+..|-.+|.+. +..+|.-|...++.++...+ ....+-. . .
T Consensus 297 ~k~vq~~na~naVLFeaI~l~~h~D~e~~ll--~~~~~~Lg~fls~r-E~NiRYLaLEsm~~L~ss~~-s~davK~-h-~ 370 (938)
T KOG1077|consen 297 SKKVQHSNAKNAVLFEAISLAIHLDSEPELL--SRAVNQLGQFLSHR-ETNIRYLALESMCKLASSEF-SIDAVKK-H-Q 370 (938)
T ss_pred ccchHhhhhHHHHHHHHHHHHHHcCCcHHHH--HHHHHHHHHHhhcc-cccchhhhHHHHHHHHhccc-hHHHHHH-H-H
Confidence 1 1122233333444544433332222 24577888889888 88999999999888887522 2222222 2 6
Q ss_pred HHHHHHHh-cCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHH
Q 009636 373 GPLVALLE-NAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCL 434 (530)
Q Consensus 373 ~~L~~ll~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al 434 (530)
..++..|+ ..|..+|+.|+..|..++...+.+. ++..|+..|...|+.+++-..
T Consensus 371 d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~--------IV~elLqYL~tAd~sireeiv 425 (938)
T KOG1077|consen 371 DTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQ--------IVAELLQYLETADYSIREEIV 425 (938)
T ss_pred HHHHHHhccccchHHHHHHHHHHHHHhchhhHHH--------HHHHHHHHHhhcchHHHHHHH
Confidence 67788888 5689999999999999988654332 466677777778887776443
No 96
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.24 E-value=0.00074 Score=65.82 Aligned_cols=251 Identities=27% Similarity=0.296 Sum_probs=170.6
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009636 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (530)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (530)
..++.+++.+.+.++.++..|+..+..+... ..+|.+..++.+.+ +.++..|+.+|+.+-. +
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~------------~av~~l~~~l~d~~-~~vr~~a~~aLg~~~~--~--- 104 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGSE------------EAVPLLRELLSDED-PRVRDAAADALGELGD--P--- 104 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhchH------------HHHHHHHHHhcCCC-HHHHHHHHHHHHccCC--h---
Confidence 3678999999999999999999997765432 36899999999998 8999999998887664 2
Q ss_pred HHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCc-----------hhHHH
Q 009636 153 KVVIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPK-----------LSMLR 220 (530)
Q Consensus 153 ~~~~~~g~i~~L~~ll~-~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~-----------~~~~~ 220 (530)
..++.|+.++. +.+..++..|.++|+.+-... .+.+++..+.+... ..++.
T Consensus 105 ------~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~-----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~ 167 (335)
T COG1413 105 ------EAVPPLVELLENDENEGVRAAAARALGKLGDER-----------ALDPLLEALQDEDSGSAAAALDAALLDVRA 167 (335)
T ss_pred ------hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh-----------hhHHHHHHhccchhhhhhhhccchHHHHHH
Confidence 34678888888 588999999999999873211 36677777733221 12344
Q ss_pred HHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCch
Q 009636 221 NATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS 300 (530)
Q Consensus 221 ~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~ 300 (530)
.+...+..+-. ....+.+..++...+..++..+..+++.+.... ..+.+.+...+.+.++.
T Consensus 168 ~a~~~l~~~~~----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~ 228 (335)
T COG1413 168 AAAEALGELGD----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLE 228 (335)
T ss_pred HHHHHHHHcCC----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHH
Confidence 44444443332 334667777787787888888888888876554 24456777888888888
Q ss_pred hHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHh
Q 009636 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLE 380 (530)
Q Consensus 301 ~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~ 380 (530)
++..++..++.+-.. ..+..+...+... +..++..+...+... .. ......+...+.
T Consensus 229 vr~~~~~~l~~~~~~-----------~~~~~l~~~l~~~-~~~~~~~~~~~~~~~--~~---------~~~~~~l~~~~~ 285 (335)
T COG1413 229 VRKAALLALGEIGDE-----------EAVDALAKALEDE-DVILALLAAAALGAL--DL---------AEAALPLLLLLI 285 (335)
T ss_pred HHHHHHHHhcccCcc-----------hhHHHHHHHHhcc-chHHHHHHHHHhccc--Cc---------hhhHHHHHHHhh
Confidence 888888888776542 2345566667666 555554444444311 10 112344555566
Q ss_pred cCchhHHHHHHHHHHHhhcC
Q 009636 381 NAEFDIKKEAAWAISNATSG 400 (530)
Q Consensus 381 ~~~~~v~~~a~~aL~nl~~~ 400 (530)
+.+..++..+..++..+...
T Consensus 286 ~~~~~~~~~~~~~l~~~~~~ 305 (335)
T COG1413 286 DEANAVRLEAALALGQIGQE 305 (335)
T ss_pred cchhhHHHHHHHHHHhhccc
Confidence 66677777777777776654
No 97
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.21 E-value=3.8e-06 Score=53.18 Aligned_cols=41 Identities=41% Similarity=0.674 Sum_probs=38.1
Q ss_pred CHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009636 359 NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS 399 (530)
Q Consensus 359 ~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 399 (530)
++++++.+++.|++|.|+.+|.+.+++++++|+|+|+|++.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46788999999999999999999999999999999999973
No 98
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.19 E-value=3.7e-06 Score=53.23 Aligned_cols=41 Identities=41% Similarity=0.863 Sum_probs=38.1
Q ss_pred ChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhC
Q 009636 148 TSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAG 188 (530)
Q Consensus 148 ~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~ 188 (530)
++++++.+++.|+++.|+++|++.++.+++.|+|+|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46788999999999999999999999999999999999973
No 99
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.17 E-value=1.9e-05 Score=62.20 Aligned_cols=115 Identities=16% Similarity=0.130 Sum_probs=99.8
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhh
Q 009636 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL 196 (530)
Q Consensus 117 ~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~ 196 (530)
.+..|+.-.....+.+.+.+...-|.|++. +|.+...+.+..++..++.-|..++..+++.++..|+|+|.+.. ..+.
T Consensus 17 Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~-n~~~ 94 (173)
T KOG4646|consen 17 YLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKT-NAKF 94 (173)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChH-HHHH
Confidence 456666655554458899999999999998 78888899999999999999999999999999999999998876 6778
Q ss_pred HhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCC
Q 009636 197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP 234 (530)
Q Consensus 197 i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~ 234 (530)
+.+.++++.++..+ .++...+..+++.++..|+....
T Consensus 95 I~ea~g~plii~~l-ssp~e~tv~sa~~~l~~l~~~~R 131 (173)
T KOG4646|consen 95 IREALGLPLIIFVL-SSPPEITVHSAALFLQLLEFGER 131 (173)
T ss_pred HHHhcCCceEEeec-CCChHHHHHHHHHHHHHhcCccc
Confidence 89999999999999 88888899999999999998763
No 100
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.17 E-value=0.0052 Score=61.55 Aligned_cols=346 Identities=16% Similarity=0.156 Sum_probs=197.9
Q ss_pred HHHHHhhcCCCh---HHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009636 76 PVMVAGVWSNDS---GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (530)
Q Consensus 76 ~~l~~~l~s~~~---~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (530)
|.++..|.+++. ......+.+|..+... .+-.+.++ ..++..+........+.+....++.+|.++.....+..
T Consensus 2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~--~~i~~~~~-~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~ 78 (415)
T PF12460_consen 2 PALLALLPDSDSSTDSNYERILEALAALSTS--PQILETLS-IRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDK 78 (415)
T ss_pred chHHhhCCCCCCcchhHHHHHHHHHHHHHCC--hhHHHHHH-HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhccccc
Confidence 567777776554 4566788888888654 23333322 24555555555444346777778888888766332222
Q ss_pred -----HHHHhCCChHHHHHhhCC-----C--CHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc---------
Q 009636 153 -----KVVIDHGAVPIFVKLLYS-----P--SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN--------- 211 (530)
Q Consensus 153 -----~~~~~~g~i~~L~~ll~~-----~--~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~--------- 211 (530)
....+..+++.+....-. . +..+.+.+..++..+...-+..++.- .+..+..+..
T Consensus 79 ~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~----~~~~~~~lf~~~~~~~~~~ 154 (415)
T PF12460_consen 79 QFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE----ILDELYSLFLSPKSFSPFQ 154 (415)
T ss_pred ccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH----HHHHHHHHHccccccCCCC
Confidence 233334477777776532 1 24556666666666654443322221 1223333321
Q ss_pred --CC----CchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCC-ChhHHHHHHHHHHHhccC--ChHHHHHHH
Q 009636 212 --GQ----PKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSN-DDEVLTDACWALSYLSDG--TNDKIQAVI 282 (530)
Q Consensus 212 --~~----~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~-d~~v~~~a~~~l~~l~~~--~~~~~~~~~ 282 (530)
.. .......-...+++.+ ++.........++..++.+..+. ++..+..++.+++.++.. .++...
T Consensus 155 ~~~~~~~~~~~~~~~l~~~il~~l---~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~--- 228 (415)
T PF12460_consen 155 PSSSTISEQQSRLVILFSAILCSL---RKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLD--- 228 (415)
T ss_pred ccccccccccccHHHHHHHHHHcC---CcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHH---
Confidence 00 1111222222333333 23333224445777777765544 577888888888888754 222222
Q ss_pred HhCcHHHHHHhh-CCCCchhHHHHHHHH----hHhh-cCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 009636 283 EAGVFPRLAEFL-MHPSPSVLIPALRTV----GNIV-TGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT 356 (530)
Q Consensus 283 ~~~~l~~L~~lL-~~~~~~~~~~al~~L----~nl~-~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~ 356 (530)
.++..+...+ .......+..++.++ -.++ ++++.. ..++..|+.++.+ +.+...++..+.-+.
T Consensus 229 --~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~------~~~~~~L~~lL~~---~~~g~~aA~~f~il~ 297 (415)
T PF12460_consen 229 --EFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLA------TELLDKLLELLSS---PELGQQAAKAFGILL 297 (415)
T ss_pred --HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchH------HHHHHHHHHHhCC---hhhHHHHHHHHhhHh
Confidence 3344444444 233334444444444 3333 233322 2346678888875 567888888888887
Q ss_pred cCCHH--------HHHHHHHh----CcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCC
Q 009636 357 AGNRE--------QIQAVIEA----NIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC 424 (530)
Q Consensus 357 ~~~~~--------~~~~l~~~----~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~ 424 (530)
...++ .++.+.+. .++|.|++.....+...+...+.||.++..+-....... --..+++.|++.|+.
T Consensus 298 ~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~-~l~~LlPLLlqsL~~ 376 (415)
T PF12460_consen 298 SDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLP-ELPTLLPLLLQSLSL 376 (415)
T ss_pred cCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHH-HHHHHHHHHHHHhCC
Confidence 75332 33334333 357777777777777799999999999999765332221 123578889999999
Q ss_pred CChHHHHHHHHHHHHHHHhhhh
Q 009636 425 PDPRIVTVCLEGLENILKVGEA 446 (530)
Q Consensus 425 ~~~~~~~~al~~l~~ll~~~~~ 446 (530)
+|++++..++.+|..++...+.
T Consensus 377 ~~~~v~~s~L~tL~~~l~~~~~ 398 (415)
T PF12460_consen 377 PDADVLLSSLETLKMILEEAPE 398 (415)
T ss_pred CCHHHHHHHHHHHHHHHHcCHH
Confidence 9999999999999999877643
No 101
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=4.5e-05 Score=75.71 Aligned_cols=220 Identities=14% Similarity=0.125 Sum_probs=146.2
Q ss_pred HHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC---h--HH-HH
Q 009636 206 LLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT---N--DK-IQ 279 (530)
Q Consensus 206 Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~---~--~~-~~ 279 (530)
+..+. .+.|..++..|+.+|..|..+.. ....+....++++..++..|+..|+..+.-..... . +. -.
T Consensus 203 l~~~~-~~~D~~Vrt~A~eglL~L~eg~k-----L~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~ 276 (823)
T KOG2259|consen 203 LIYLE-HDQDFRVRTHAVEGLLALSEGFK-----LSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEE 276 (823)
T ss_pred HHHHh-cCCCcchHHHHHHHHHhhccccc-----ccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence 55555 77788888888888888876431 22345566778888888999988865554433221 1 11 11
Q ss_pred HHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHH--hc
Q 009636 280 AVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI--TA 357 (530)
Q Consensus 280 ~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl--~~ 357 (530)
.+.+ .++..+...+.+.++.++..|...||.+-.-+++.....++..++..+-..=... +......++- .+
T Consensus 277 kl~D-~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ah------krpk~l~s~GewSs 349 (823)
T KOG2259|consen 277 KLKD-AAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAH------KRPKALYSSGEWSS 349 (823)
T ss_pred hhHH-HHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcc------cchHHHHhcCCccc
Confidence 2333 6788899999999999999999999998876666555555544443222211111 1111111111 11
Q ss_pred C-----------CHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCC
Q 009636 358 G-----------NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPD 426 (530)
Q Consensus 358 ~-----------~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~ 426 (530)
| ..+.-..++..|..-.++.-+.+.=.+||+.|...++.++... |.+.. ..++.|++++.++.
T Consensus 350 Gk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ss-P~FA~-----~aldfLvDMfNDE~ 423 (823)
T KOG2259|consen 350 GKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSS-PGFAV-----RALDFLVDMFNDEI 423 (823)
T ss_pred CccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCC-CCcHH-----HHHHHHHHHhccHH
Confidence 1 1122344667788888888888888899999999999999863 33322 25889999999999
Q ss_pred hHHHHHHHHHHHHHHHhh
Q 009636 427 PRIVTVCLEGLENILKVG 444 (530)
Q Consensus 427 ~~~~~~al~~l~~ll~~~ 444 (530)
..++..++.+|..|....
T Consensus 424 ~~VRL~ai~aL~~Is~~l 441 (823)
T KOG2259|consen 424 EVVRLKAIFALTMISVHL 441 (823)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999887664
No 102
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=0.002 Score=64.88 Aligned_cols=300 Identities=17% Similarity=0.165 Sum_probs=176.7
Q ss_pred HHHhhcCCCCHH--HHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHh
Q 009636 121 FVEFLLREDYPQ--LQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVL 198 (530)
Q Consensus 121 Lv~ll~~~~~~~--i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~ 198 (530)
-+++|++...++ +-+..+.+| ...+.+..+.+ +..+..=|.+.++.....|+.+++|+-+.. .+..+.
T Consensus 79 aV~LLss~kysEKqIGYl~is~L---~n~n~dl~klv-----in~iknDL~srn~~fv~LAL~~I~niG~re--~~ea~~ 148 (938)
T KOG1077|consen 79 AVNLLSSNKYSEKQIGYLFISLL---LNENSDLMKLV-----INSIKNDLSSRNPTFVCLALHCIANIGSRE--MAEAFA 148 (938)
T ss_pred HHHHhhcCCccHHHHhHHHHHHH---HhcchHHHHHH-----HHHHHhhhhcCCcHHHHHHHHHHHhhccHh--HHHHhh
Confidence 467777665222 333333333 33344444333 345566666778888999999999984321 333321
Q ss_pred hcCChHHHHHhhc-CCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHH
Q 009636 199 SQGGLVPLLAQLN-GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDK 277 (530)
Q Consensus 199 ~~~~i~~Ll~ll~-~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~ 277 (530)
. -++ ++|. .+...-+++.++.||..|.+..|. .....+-...++.+|...+-.+...+...+..++...++.
T Consensus 149 ~--DI~---KlLvS~~~~~~vkqkaALclL~L~r~spD--l~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~ 221 (938)
T KOG1077|consen 149 D--DIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPD--LVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPES 221 (938)
T ss_pred h--hhH---HHHhCCcchHHHHHHHHHHHHHHHhcCcc--ccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHH
Confidence 1 233 4443 334566788888888888887533 3333566778899998888888888887887777665543
Q ss_pred HHHHHHhCcHHHHHHhhC---C----------CCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCC-chh
Q 009636 278 IQAVIEAGVFPRLAEFLM---H----------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKS 343 (530)
Q Consensus 278 ~~~~~~~~~l~~L~~lL~---~----------~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~ 343 (530)
....+. ..+..|..+.. . +.|-+...+++.|.++-...+..... --..+++.++...+... ...
T Consensus 222 yk~~~~-~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~-~l~evl~~iLnk~~~~~~~k~ 299 (938)
T KOG1077|consen 222 YKTCLP-LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRA-RLNEVLERILNKAQEPPKSKK 299 (938)
T ss_pred HhhhHH-HHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHH-HHHHHHHHHHhccccCccccc
Confidence 332221 12222222221 1 35567788888888874433322211 11123333433333110 112
Q ss_pred -----HHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHH
Q 009636 344 -----IKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPL 418 (530)
Q Consensus 344 -----v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L 418 (530)
.+....+-..+++.+-+..-..+. ..+..|..++.+.+..+|.-|+..++.++..+. ....+... .+.+
T Consensus 300 vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~--s~davK~h--~d~I 373 (938)
T KOG1077|consen 300 VQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQFLSHRETNIRYLALESMCKLASSEF--SIDAVKKH--QDTI 373 (938)
T ss_pred hHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHHhhcccccchhhhHHHHHHHHhccc--hHHHHHHH--HHHH
Confidence 233344444555543222222222 367788999999999999999999999998642 22222222 6777
Q ss_pred HhccC-CCChHHHHHHHHHHHHHHHhhh
Q 009636 419 CDLLV-CPDPRIVTVCLEGLENILKVGE 445 (530)
Q Consensus 419 ~~lL~-~~~~~~~~~al~~l~~ll~~~~ 445 (530)
+..|+ ..|..++..+++.|+.++....
T Consensus 374 i~sLkterDvSirrravDLLY~mcD~~N 401 (938)
T KOG1077|consen 374 INSLKTERDVSIRRRAVDLLYAMCDVSN 401 (938)
T ss_pred HHHhccccchHHHHHHHHHHHHHhchhh
Confidence 88888 7899999999999999987653
No 103
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=0.0015 Score=66.30 Aligned_cols=149 Identities=11% Similarity=0.106 Sum_probs=92.0
Q ss_pred CchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHH
Q 009636 327 QALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQ 405 (530)
Q Consensus 327 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~ 405 (530)
|++--++.+|..+ +-++|+.+......++. .+.+.+-.+++..+...--. =...+...|..-..++..++.. -++.
T Consensus 317 ~l~mDvLrvLss~-dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~-e~d~~~~yRqlLiktih~cav~-Fp~~ 393 (948)
T KOG1058|consen 317 GLIMDVLRVLSSP-DLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNE-ESDDNGKYRQLLIKTIHACAVK-FPEV 393 (948)
T ss_pred HHHHHHHHHcCcc-cccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcccc-ccccchHHHHHHHHHHHHHhhc-ChHH
Confidence 3444455667777 88888888877777665 45554444443322222111 0112356788888888888775 3343
Q ss_pred HHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHH
Q 009636 406 IKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEK 485 (530)
Q Consensus 406 ~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~ 485 (530)
.. .+++.|++.+.+.++......+..+...+...++.. ...++ .-++.+-.-.+.+++.-
T Consensus 394 aa-----tvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr----------~~ii~-----~l~~~~~~irS~ki~rg 453 (948)
T KOG1058|consen 394 AA-----TVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLR----------ASIIE-----KLLETFPQIRSSKICRG 453 (948)
T ss_pred HH-----HHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHH----------HHHHH-----HHHHhhhhhcccccchh
Confidence 33 468899999999998887777777777777666532 11111 12233344466777888
Q ss_pred HHHHHHHhCCCCC
Q 009636 486 SVKLLETYWLDDE 498 (530)
Q Consensus 486 a~~il~~~~~~~~ 498 (530)
|.+|+-.|.+++.
T Consensus 454 alwi~GeYce~~~ 466 (948)
T KOG1058|consen 454 ALWILGEYCEGLS 466 (948)
T ss_pred HHHHHHHHHhhhH
Confidence 8888888876555
No 104
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.11 E-value=0.00028 Score=64.21 Aligned_cols=238 Identities=16% Similarity=0.144 Sum_probs=148.1
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC--CCchhHHHHHHHHhHhhcCCchhhHHHh
Q 009636 247 ALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH--PSPSVLIPALRTVGNIVTGDDMQTQCVI 324 (530)
Q Consensus 247 ~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~~~~~al~~L~nl~~~~~~~~~~~~ 324 (530)
.|-++++.-++-.+.-|..++.++....+.+.....+...-.+++.++++ +...++...+.++.-+.. ++...+.+-
T Consensus 153 yLgkl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf-~~~~aqdi~ 231 (432)
T COG5231 153 YLGKLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTF-SKECAQDID 231 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc-CHHHHHHHH
Confidence 33344444455566677788888876655544434444455677777776 345788888888888775 443332221
Q ss_pred h-cCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHhC-cHHHHHHHHhcC--chhHHHHHHHHHHHhhc
Q 009636 325 E-YQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQAVIEAN-IIGPLVALLENA--EFDIKKEAAWAISNATS 399 (530)
Q Consensus 325 ~-~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~-~i~~L~~ll~~~--~~~v~~~a~~aL~nl~~ 399 (530)
. ...+.-++.+.+..-...|-+-+|.++.|++.. ....+..+.-.| +.+..--++..+ |.+++...-..=..+..
T Consensus 232 K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~ 311 (432)
T COG5231 232 KMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQ 311 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHh
Confidence 1 235666667776553567888899999999883 334444444334 544444444332 45544333222111111
Q ss_pred C----------------C-------------CHHHHHHHHHc--CChHHHHhccCCCChH-HHHHHHHHHHHHHHhhhhh
Q 009636 400 G----------------G-------------THEQIKFLVIQ--GCIKPLCDLLVCPDPR-IVTVCLEGLENILKVGEAE 447 (530)
Q Consensus 400 ~----------------~-------------~~~~~~~l~~~--~~i~~L~~lL~~~~~~-~~~~al~~l~~ll~~~~~~ 447 (530)
. + -......+... .++..|..+++..++. ....|+.-+..+++..+.
T Consensus 312 ~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE- 390 (432)
T COG5231 312 NTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPE- 390 (432)
T ss_pred hhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCch-
Confidence 0 0 01233344433 3467778888777665 555677777777776654
Q ss_pred hhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 009636 448 KNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLD 496 (530)
Q Consensus 448 ~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~~ 496 (530)
....+...|+-+.|.+|++|++++|+-.|.+.++.+.++
T Consensus 391 ----------~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~~ 429 (432)
T COG5231 391 ----------INAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCISS 429 (432)
T ss_pred ----------HHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHhh
Confidence 477888999999999999999999999999999887654
No 105
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.11 E-value=0.00025 Score=76.99 Aligned_cols=336 Identities=12% Similarity=0.122 Sum_probs=198.1
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhhcCCC-CCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhc-CChhhHH
Q 009636 76 PVMVAGVWSNDSGVQYECTTQFRKLLSIER-SPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS-GTSEHTK 153 (530)
Q Consensus 76 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~-~~~~~~~ 153 (530)
..+...+.+.+|..|..++..+..+...-. .+.+. .....+...+.++|.+.+ .-.|..|.+-++-+-. ++....+
T Consensus 821 ~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~-l~~~eI~~aF~~~Lsd~d-Ef~QDvAsrGlglVYelgd~~~k~ 898 (1702)
T KOG0915|consen 821 KLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVV-LMLKEIQEAFSHLLSDND-EFSQDVASRGLGLVYELGDSSLKK 898 (1702)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhh-hccHHHHHHHHHHhcccH-HHHHHHHhcCceEEEecCCchhHH
Confidence 444556678999998887765554544322 22222 222345688899998887 7788888877665443 2233333
Q ss_pred HHHhCCChHHHHHhhCC---------CCHHHHH-------------HHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc
Q 009636 154 VVIDHGAVPIFVKLLYS---------PSDDVRE-------------QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN 211 (530)
Q Consensus 154 ~~~~~g~i~~L~~ll~~---------~~~~i~~-------------~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~ 211 (530)
.+ +..|+.-|.. .+.++.+ ..-.=|+|||.+-.. -..+-.++++.+
T Consensus 899 ~L-----V~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~q-------PdLVYKFM~LAn 966 (1702)
T KOG0915|consen 899 SL-----VDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQ-------PDLVYKFMQLAN 966 (1702)
T ss_pred HH-----HHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCC-------hHHHHHHHHHhh
Confidence 33 3444444321 1111111 111234444433211 113444566664
Q ss_pred CCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHH
Q 009636 212 GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLA 291 (530)
Q Consensus 212 ~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~ 291 (530)
.+....-+.-|++.+..++.............++|.|...=.+++..|+.....+-..+...+...+..... .+++-|+
T Consensus 967 h~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL 1045 (1702)
T KOG0915|consen 967 HNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLN-EILDELL 1045 (1702)
T ss_pred hhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHH
Confidence 444556666777777777766544444556777888887777888888766555555555554444444443 7888899
Q ss_pred HhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHH---HHHHHHHHhc--CC---HHHH
Q 009636 292 EFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKE---ACWTVSNITA--GN---REQI 363 (530)
Q Consensus 292 ~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~---a~~~L~nl~~--~~---~~~~ 363 (530)
.-+.+..|.+|+.+|.+|..|..+.+.....-.-..+...+...+++- ...||+. ++.+|+.++. ++ ....
T Consensus 1046 ~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDI-KEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~ 1124 (1702)
T KOG0915|consen 1046 VNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDI-KESVREAADKAARALSKLCVRICDVTNGAKG 1124 (1702)
T ss_pred HhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcccCCcccH
Confidence 999999999999999999999998764321100113455555566555 5667765 4566666664 11 1112
Q ss_pred HHHHHhCcHHHHHH--HHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHH
Q 009636 364 QAVIEANIIGPLVA--LLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVT 431 (530)
Q Consensus 364 ~~l~~~~~i~~L~~--ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~ 431 (530)
..+++ .++|.|++ ++ +.-.++|+-++.++..++.........++ ...++.|.+..+.-++.+..
T Consensus 1125 ~~~l~-~iLPfLl~~gim-s~v~evr~~si~tl~dl~Kssg~~lkP~~--~~LIp~ll~~~s~lE~~vLn 1190 (1702)
T KOG0915|consen 1125 KEALD-IILPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGKELKPHF--PKLIPLLLNAYSELEPQVLN 1190 (1702)
T ss_pred HHHHH-HHHHHHhccCcc-cchHHHHHHHHHHHHHHHHhchhhhcchh--hHHHHHHHHHccccchHHHH
Confidence 22222 35566554 23 44679999999999999986543222221 23577777777766665544
No 106
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.09 E-value=0.00013 Score=72.48 Aligned_cols=247 Identities=14% Similarity=0.131 Sum_probs=154.3
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHH---HHhhhhccCC---CCC
Q 009636 163 IFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNAT---WTLSNFCRGK---PQP 236 (530)
Q Consensus 163 ~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~---~~L~~L~~~~---~~~ 236 (530)
.|+.+..+.+..++.+|+.+|..|.... ...+. .....++++ .+.+..++..|+ |.++|.+-.. ...
T Consensus 202 ~l~~~~~~~D~~Vrt~A~eglL~L~eg~-kL~~~-----~Y~~A~~~l-sD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~ 274 (823)
T KOG2259|consen 202 GLIYLEHDQDFRVRTHAVEGLLALSEGF-KLSKA-----CYSRAVKHL-SDDYEDVRKAAVQLVSVWGNRCPAPLERESE 274 (823)
T ss_pred HHHHHhcCCCcchHHHHHHHHHhhcccc-cccHH-----HHHHHHHHh-cchHHHHHHHHHHHHHHHHhcCCCcccchhh
Confidence 3666666677777777777776665422 22222 344556777 777888888874 5555555321 112
Q ss_pred ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcC-
Q 009636 237 PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG- 315 (530)
Q Consensus 237 ~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~- 315 (530)
.......++..+...+..-.-.|+..+..+|+.+...+++.+...++..++..+-.--... -+-..+..=|-.++|
T Consensus 275 e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ah---krpk~l~s~GewSsGk 351 (823)
T KOG2259|consen 275 EEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAH---KRPKALYSSGEWSSGK 351 (823)
T ss_pred hhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcc---cchHHHHhcCCcccCc
Confidence 2233455666777777777888899999999988877777776666655544221110000 011111111111111
Q ss_pred ----------CchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchh
Q 009636 316 ----------DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFD 385 (530)
Q Consensus 316 ----------~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~ 385 (530)
.++....++.+|.-..++.-|.++ -.+||+.|...++.++...|.... ..+..|++++.+....
T Consensus 352 ~~~advpsee~d~~~~siI~sGACGA~VhGlEDE-f~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE~~~ 425 (823)
T KOG2259|consen 352 EWNADVPSEEDDEEEESIIPSGACGALVHGLEDE-FYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFNDEIEV 425 (823)
T ss_pred cccccCchhhccccccccccccccceeeeechHH-HHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccHHHH
Confidence 223444577888888888888877 789999999999999987665433 2467899999998899
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHH
Q 009636 386 IKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTV 432 (530)
Q Consensus 386 v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~ 432 (530)
||..|+.+|..++.+.. ++...++.++..|.+.+++++..
T Consensus 426 VRL~ai~aL~~Is~~l~-------i~eeql~~il~~L~D~s~dvRe~ 465 (823)
T KOG2259|consen 426 VRLKAIFALTMISVHLA-------IREEQLRQILESLEDRSVDVREA 465 (823)
T ss_pred HHHHHHHHHHHHHHHhe-------ecHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999999987542 12233444555555555555443
No 107
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.09 E-value=0.0001 Score=78.05 Aligned_cols=267 Identities=15% Similarity=0.131 Sum_probs=174.3
Q ss_pred HHHHHHhhcC-CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC---Chh
Q 009636 75 LPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASG---TSE 150 (530)
Q Consensus 75 l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~---~~~ 150 (530)
++.+...++. ...+.+..|+..|..+......+ ..-..++|.++.++.++. ..+|..|+..|+.+... -+.
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de----~~LDRVlPY~v~l~~Ds~-a~Vra~Al~Tlt~~L~~Vr~~~~ 498 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDDE----VKLDRVLPYFVHLLMDSE-ADVRATALETLTELLALVRDIPP 498 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchH----HHHhhhHHHHHHHhcCch-HHHHHHHHHHHHHHHhhccCCCc
Confidence 4555555554 45677888999988886543211 122457999999999998 99999999999887762 233
Q ss_pred hHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCC------------------chh-----------hhhHhhc
Q 009636 151 HTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDS------------------PRC-----------RDLVLSQ 200 (530)
Q Consensus 151 ~~~~~~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~------------------~~~-----------~~~i~~~ 200 (530)
.-..++..-++|.|-.++.+ ....++-.-+..|+.||... +.. ...+. .
T Consensus 499 ~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~-~ 577 (1431)
T KOG1240|consen 499 SDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALH-H 577 (1431)
T ss_pred ccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHH-H
Confidence 33344555678888888877 33444544445555554211 100 00000 0
Q ss_pred CChHH-HHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHH
Q 009636 201 GGLVP-LLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQ 279 (530)
Q Consensus 201 ~~i~~-Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~ 279 (530)
.+.. ...++ .++++-+++..+..+.-||.... ......-+++.|..+|...|..++......|..++..-..
T Consensus 578 -~V~~~v~sLl-sd~~~~Vkr~Lle~i~~LC~FFG--k~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~--- 650 (1431)
T KOG1240|consen 578 -TVEQMVSSLL-SDSPPIVKRALLESIIPLCVFFG--KEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGW--- 650 (1431)
T ss_pred -HHHHHHHHHH-cCCchHHHHHHHHHHHHHHHHhh--hcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEee---
Confidence 1222 23334 55566777777777777775431 1122345688899999988988888877777766532111
Q ss_pred HHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009636 280 AVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (530)
Q Consensus 280 ~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 357 (530)
.-++..++|.|.+-|.+.++.+...|++++.-|+...--....+ ..+++....+|-++ +.-+|..++.+|..++.
T Consensus 651 rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v--~~i~~~v~PlL~hP-N~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 651 RSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAV--KDILQDVLPLLCHP-NLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred eeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHH--HHHHHhhhhheeCc-hHHHHHHHHHHHHHHHh
Confidence 11344778999999999999999999999999986443222222 24677788888898 99999999999888765
No 108
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.09 E-value=0.0025 Score=62.16 Aligned_cols=215 Identities=25% Similarity=0.332 Sum_probs=149.4
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhh
Q 009636 116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD 195 (530)
Q Consensus 116 g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~ 195 (530)
..++.+.+.+.+.+ +.++..|++.++.+.. ..+++.+..++.+.++.++..++.+|+.+- .+
T Consensus 43 ~~~~~~~~~l~~~~-~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--~~---- 104 (335)
T COG1413 43 EAADELLKLLEDED-LLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELG--DP---- 104 (335)
T ss_pred hhHHHHHHHHcCCC-HHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccC--Ch----
Confidence 35888999999987 8999999999766554 235789999999999999999999988872 22
Q ss_pred hHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChh------------HHHHH
Q 009636 196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDE------------VLTDA 263 (530)
Q Consensus 196 ~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~------------v~~~a 263 (530)
..++.++..+..+.+..++..+.++|..+-... .+..++..+.+.... ++..+
T Consensus 105 -----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a 169 (335)
T COG1413 105 -----EAVPPLVELLENDENEGVRAAAARALGKLGDER----------ALDPLLEALQDEDSGSAAAALDAALLDVRAAA 169 (335)
T ss_pred -----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh----------hhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence 157889999955789999999999999886543 255556666554422 33333
Q ss_pred HHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchh
Q 009636 264 CWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKS 343 (530)
Q Consensus 264 ~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~ 343 (530)
...++.+. +...++.+...+.+....++..+..+++.+.... ..+.+.+...+.+. +..
T Consensus 170 ~~~l~~~~-----------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~-~~~ 228 (335)
T COG1413 170 AEALGELG-----------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDE-SLE 228 (335)
T ss_pred HHHHHHcC-----------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCC-CHH
Confidence 33333321 1134566777777777788888888888777543 23456677777777 778
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHH
Q 009636 344 IKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAIS 395 (530)
Q Consensus 344 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~ 395 (530)
+|..++..++.+-.. ..++.++..+...+..++..+..++.
T Consensus 229 vr~~~~~~l~~~~~~-----------~~~~~l~~~l~~~~~~~~~~~~~~~~ 269 (335)
T COG1413 229 VRKAALLALGEIGDE-----------EAVDALAKALEDEDVILALLAAAALG 269 (335)
T ss_pred HHHHHHHHhcccCcc-----------hhHHHHHHHHhccchHHHHHHHHHhc
Confidence 888888777776432 13456666677666666666665555
No 109
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=98.08 E-value=0.00091 Score=67.14 Aligned_cols=265 Identities=17% Similarity=0.130 Sum_probs=169.6
Q ss_pred HHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhh---------cCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHH
Q 009636 94 TTQFRKLLSIERSPPIEEVIRSGVVPRFVEFL---------LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIF 164 (530)
Q Consensus 94 ~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll---------~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L 164 (530)
+.+|+-+ +.+ ....+.++....+..|.++- ....++.+..+|++||+|+...++..+..+++.|..+.+
T Consensus 2 L~~LRiL-sRd-~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l 79 (446)
T PF10165_consen 2 LETLRIL-SRD-PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKL 79 (446)
T ss_pred HHHHHHH-ccC-cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHH
Confidence 3445533 332 33444555444566666655 233348999999999999999999999999999999999
Q ss_pred HHhhCCC-----CHHHHHHHHHHHHhhhCCCchhhhhHhhc-CChHHHHHhhc----------C------CCchhHHHHH
Q 009636 165 VKLLYSP-----SDDVREQAVWALGNIAGDSPRCRDLVLSQ-GGLVPLLAQLN----------G------QPKLSMLRNA 222 (530)
Q Consensus 165 ~~ll~~~-----~~~i~~~a~~~L~nl~~~~~~~~~~i~~~-~~i~~Ll~ll~----------~------~~~~~~~~~a 222 (530)
+..|+.. +.++.-...++|--++...+..+..+.+. +++..++..+. . ..+.....-+
T Consensus 80 ~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~Ei 159 (446)
T PF10165_consen 80 CERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEI 159 (446)
T ss_pred HHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHH
Confidence 9999875 67777778888877777777677665544 56666666552 0 1245567778
Q ss_pred HHHhhhhccCCCCCCh----hhhhchHHHHHHhh---cCC--ChhHHHHHHHHHHHhccCChHH-----------HHHHH
Q 009636 223 TWTLSNFCRGKPQPPF----DQVSPALPALAHLI---HSN--DDEVLTDACWALSYLSDGTNDK-----------IQAVI 282 (530)
Q Consensus 223 ~~~L~~L~~~~~~~~~----~~~~~~l~~L~~ll---~~~--d~~v~~~a~~~l~~l~~~~~~~-----------~~~~~ 282 (530)
+.++.|+....+.... .....++..+..++ ..+ .......++.+|.++--..... .....
T Consensus 160 LKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~ 239 (446)
T PF10165_consen 160 LKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGD 239 (446)
T ss_pred HHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCC
Confidence 8888998877644332 22344445555552 111 2456677777777763111111 00011
Q ss_pred HhCcHHHHHHhhCC----C----CchhHHHHHHHHhHhhcCCchhhHHHh----------------hcCchHHHHHhhcC
Q 009636 283 EAGVFPRLAEFLMH----P----SPSVLIPALRTVGNIVTGDDMQTQCVI----------------EYQALPCLLNLLSG 338 (530)
Q Consensus 283 ~~~~l~~L~~lL~~----~----~~~~~~~al~~L~nl~~~~~~~~~~~~----------------~~~~l~~L~~lL~~ 338 (530)
....+..|+.+|.. . -.....+.+.+|.+++..+...+..+- ...+-..|+.++.+
T Consensus 240 ~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~ 319 (446)
T PF10165_consen 240 NMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTS 319 (446)
T ss_pred ChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCC
Confidence 22345666666543 1 135778889999999887654443332 12467788888888
Q ss_pred CCchhHHHHHHHHHHHHhcCCHH
Q 009636 339 NYKKSIKKEACWTVSNITAGNRE 361 (530)
Q Consensus 339 ~~~~~v~~~a~~~L~nl~~~~~~ 361 (530)
. .+.++..++..+-.+|..+..
T Consensus 320 ~-~~~~k~~vaellf~Lc~~d~~ 341 (446)
T PF10165_consen 320 P-DPQLKDAVAELLFVLCKEDAS 341 (446)
T ss_pred C-CchHHHHHHHHHHHHHhhhHH
Confidence 8 688888888888888765544
No 110
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=0.0023 Score=69.90 Aligned_cols=318 Identities=17% Similarity=0.174 Sum_probs=188.1
Q ss_pred cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchh-
Q 009636 115 SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC- 193 (530)
Q Consensus 115 ~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~- 193 (530)
..+||.|.++=-+++ +.+|..-..+...+..++....+... ..++.-|+.-+.+....+|+.++.+|..|..+.+..
T Consensus 997 ~kLIPrLyRY~yDP~-~~Vq~aM~sIW~~Li~D~k~~vd~y~-neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~ 1074 (1702)
T KOG0915|consen 997 KKLIPRLYRYQYDPD-KKVQDAMTSIWNALITDSKKVVDEYL-NEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQ 1074 (1702)
T ss_pred HHhhHHHhhhccCCc-HHHHHHHHHHHHHhccChHHHHHHHH-HHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHH
Confidence 347899998877888 89998888888888886565555544 356777888888888999999999999999776531
Q ss_pred -hhhHhhcCChHHHHHhhcCCCchhHHHH---HHHHhhhhccCC-----CCCChhhhhchHHHHHH-hhcCCChhHHHHH
Q 009636 194 -RDLVLSQGGLVPLLAQLNGQPKLSMLRN---ATWTLSNFCRGK-----PQPPFDQVSPALPALAH-LIHSNDDEVLTDA 263 (530)
Q Consensus 194 -~~~i~~~~~i~~Ll~ll~~~~~~~~~~~---a~~~L~~L~~~~-----~~~~~~~~~~~l~~L~~-ll~~~d~~v~~~a 263 (530)
.+.+.+ ....+.+.. ++-.+.++.. ++.+++.+|-.. +.........++|.|+. -+-+.-++++.-+
T Consensus 1075 ~~e~lpe--lw~~~fRvm-DDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~s 1151 (1702)
T KOG0915|consen 1075 VKEKLPE--LWEAAFRVM-DDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFS 1151 (1702)
T ss_pred HHHHHHH--HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHH
Confidence 122211 233333333 4444555554 455666655433 11222334455555442 2225568899999
Q ss_pred HHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHH-HHHHH----------Hh-HhhcCCchh--hHHH------
Q 009636 264 CWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLI-PALRT----------VG-NIVTGDDMQ--TQCV------ 323 (530)
Q Consensus 264 ~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~-~al~~----------L~-nl~~~~~~~--~~~~------ 323 (530)
+.++..++......+.... ..+++.|+...+.-++.+.- -+++. +. +.+.+++.. ....
T Consensus 1152 i~tl~dl~Kssg~~lkP~~-~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~ 1230 (1702)
T KOG0915|consen 1152 IGTLMDLAKSSGKELKPHF-PKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDI 1230 (1702)
T ss_pred HHHHHHHHHhchhhhcchh-hHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhH
Confidence 9999999977665444332 25667777776665554332 22222 21 122222211 0111
Q ss_pred -hhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCC
Q 009636 324 -IEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGT 402 (530)
Q Consensus 324 -~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~ 402 (530)
+-...+|.+.++++.+-.-..|..++..++-++........... -.++..++..+.+.+..+++.-+.|.+.++....
T Consensus 1231 ~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~s-gKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss 1309 (1702)
T KOG0915|consen 1231 SVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYS-GKLLRALFPGAKDRNESVRKAFASAMGYLAKFSS 1309 (1702)
T ss_pred HHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcch-hHHHHHHhhccccccHHHHHHHHHHHHHHHhcCC
Confidence 11246677777777654445566666666666542111110010 1246667777777889999999999999999888
Q ss_pred HHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhh
Q 009636 403 HEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG 444 (530)
Q Consensus 403 ~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~ 444 (530)
+++.+.+++. .+..++...++ ....++..+.+|..+.
T Consensus 1310 ~dq~qKLie~----~l~~~l~k~es-~~siscatis~Ian~s 1346 (1702)
T KOG0915|consen 1310 PDQMQKLIET----LLADLLGKDES-LKSISCATISNIANYS 1346 (1702)
T ss_pred hHHHHHHHHH----HHHHHhccCCC-ccchhHHHHHHHHHhh
Confidence 8888776542 23333333222 2244555555555444
No 111
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.02 E-value=0.01 Score=62.45 Aligned_cols=340 Identities=16% Similarity=0.138 Sum_probs=198.0
Q ss_pred HHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhc------CCC-CHHHHHHHHHHHHHHhcCC--hhhHHHHHhCCChHH
Q 009636 93 CTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLL------RED-YPQLQFEAAWALTNIASGT--SEHTKVVIDHGAVPI 163 (530)
Q Consensus 93 a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~------~~~-~~~i~~~a~~~L~~l~~~~--~~~~~~~~~~g~i~~ 163 (530)
|...+..+++..+.... .++++.+++.+. .++ ++.-+.-|+++++++++-- +...+...+.=+++.
T Consensus 392 a~~~l~~~~~KR~ke~l-----~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~h 466 (1010)
T KOG1991|consen 392 ALDFLTTLVSKRGKETL-----PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNH 466 (1010)
T ss_pred HHHHHHHHHHhcchhhh-----hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHH
Confidence 55555555544322222 356777777777 222 4667778888888888510 111112222234556
Q ss_pred HHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCCh---hh
Q 009636 164 FVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF---DQ 240 (530)
Q Consensus 164 L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~---~~ 240 (530)
+.-.++++.--+|..|+|.++.++...- .+...-..++....+.+..+.+-.++-.|+.+|..+..+.+.... ..
T Consensus 467 VfP~f~s~~g~Lrarac~vl~~~~~~df--~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~h 544 (1010)
T KOG1991|consen 467 VFPEFQSPYGYLRARACWVLSQFSSIDF--KDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAH 544 (1010)
T ss_pred hhHhhcCchhHHHHHHHHHHHHHHhccC--CChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhh
Confidence 6666778888899999999999984332 222222335666677775678889999999999999888744322 33
Q ss_pred hhchHHHHHHhhcCCChhHHHHHHHHH-HHhccCChHHHHHHHHhCcHHHHHHhhCC---CC---chhHHHHHHHHhHhh
Q 009636 241 VSPALPALAHLIHSNDDEVLTDACWAL-SYLSDGTNDKIQAVIEAGVFPRLAEFLMH---PS---PSVLIPALRTVGNIV 313 (530)
Q Consensus 241 ~~~~l~~L~~ll~~~d~~v~~~a~~~l-~~l~~~~~~~~~~~~~~~~l~~L~~lL~~---~~---~~~~~~al~~L~nl~ 313 (530)
+.+.+..|+++.+..+.+....++..+ +..++.-......+.. .+.....+++.. .+ .+-...|.++|..+.
T Consensus 545 vp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q-~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~ 623 (1010)
T KOG1991|consen 545 VPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQ-NLAETFLKVLQTSEDEDESDDDKAIAASGILRTIS 623 (1010)
T ss_pred hhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHH-HHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHH
Confidence 456666677777766666555555544 3333221111111222 344555666653 22 222333444443332
Q ss_pred c---CCchh--hHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHH
Q 009636 314 T---GDDMQ--TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKK 388 (530)
Q Consensus 314 ~---~~~~~--~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~ 388 (530)
+ .-+.. .-.-++..+++.+-.+|++. -.++-.+++-.+.+++...++....++ |+++.+.+.+.....+.-.
T Consensus 624 Til~s~e~~p~vl~~le~~~l~vi~~iL~~~-i~dfyeE~~ei~~~~t~~~~~Isp~mW--~ll~li~e~~~~~~~dyf~ 700 (1010)
T KOG1991|consen 624 TILLSLENHPEVLKQLEPIVLPVIGFILKND-ITDFYEELLEIVSSLTFLSKEISPIMW--GLLELILEVFQDDGIDYFT 700 (1010)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHhhhhhhhcccCHHHH--HHHHHHHHHHhhhhHHHHH
Confidence 2 11111 11223456778888888887 778888999888888775544444444 3788888888888888889
Q ss_pred HHHHHHHHhhcCCCHHHHHHH-HHcCChHHHHhccCC---CChHHHHHHHHHHHHHHHhh
Q 009636 389 EAAWAISNATSGGTHEQIKFL-VIQGCIKPLCDLLVC---PDPRIVTVCLEGLENILKVG 444 (530)
Q Consensus 389 ~a~~aL~nl~~~~~~~~~~~l-~~~~~i~~L~~lL~~---~~~~~~~~al~~l~~ll~~~ 444 (530)
...-+|.|++..+.+.....- .-.-++..+..++.+ .|.++ ..+++.+..++-.+
T Consensus 701 d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D~d~-~~a~kLle~iiL~~ 759 (1010)
T KOG1991|consen 701 DMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENGEDSDC-ESACKLLEVIILNC 759 (1010)
T ss_pred HHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCCCchHHH-HHHHHHHHHHHHHh
Confidence 999999999987765332221 111123334444544 23343 34666666665433
No 112
>PF05536 Neurochondrin: Neurochondrin
Probab=98.02 E-value=0.00075 Score=69.28 Aligned_cols=235 Identities=19% Similarity=0.178 Sum_probs=159.1
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchh---hhhHhhcCChHHHHHhhcC------CCchhHHHHHHHHhhhhcc
Q 009636 161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC---RDLVLSQGGLVPLLAQLNG------QPKLSMLRNATWTLSNFCR 231 (530)
Q Consensus 161 i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~---~~~i~~~~~i~~Ll~ll~~------~~~~~~~~~a~~~L~~L~~ 231 (530)
+...+.+|+..+.+-+-.++..+.+++...+.. ++.+.+.=+...+-++|.. .+....+.-++.+|+.+|.
T Consensus 7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~ 86 (543)
T PF05536_consen 7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR 86 (543)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence 556677888877666777777888887655532 2345555456666667742 1346678888999999999
Q ss_pred CCCCCChhhhhchHHHHHHhhcCCCh-hHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHh
Q 009636 232 GKPQPPFDQVSPALPALAHLIHSNDD-EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG 310 (530)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~ll~~~d~-~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~ 310 (530)
.+.........+-+|.|+..+.+.+. ++...++.+|..++..++ ..+.+++.|.++.|.+.+.+ .+.....|+.++.
T Consensus 87 ~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~-G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~ 164 (543)
T PF05536_consen 87 DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPE-GAKALLESGAVPALCEIIPN-QSFQMEIALNLLL 164 (543)
T ss_pred ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcH-hHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHH
Confidence 66555556677889999999988776 999999999999995554 45779999999999999987 5567888999998
Q ss_pred HhhcCCchhhHH---HhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHH-HH----HHHHhCcHHHHHHHHhcC
Q 009636 311 NIVTGDDMQTQC---VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQ-IQ----AVIEANIIGPLVALLENA 382 (530)
Q Consensus 311 nl~~~~~~~~~~---~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~-~~----~l~~~~~i~~L~~ll~~~ 382 (530)
+++......... -.-..+++.+...+... ....+.+.|..|+.+....+.. .. .-+-..+...+..++.+.
T Consensus 165 ~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~-~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr 243 (543)
T PF05536_consen 165 NLLSRLGQKSWAEDSQLLHSILPSLARDFSSF-HGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSR 243 (543)
T ss_pred HHHHhcchhhhhhhHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcC
Confidence 887654421100 01124566666666666 6677888899999988754211 11 111223455555666655
Q ss_pred -chhHHHHHHHHHHHhh
Q 009636 383 -EFDIKKEAAWAISNAT 398 (530)
Q Consensus 383 -~~~v~~~a~~aL~nl~ 398 (530)
.+.-|..++.....+.
T Consensus 244 ~~~~~R~~al~Laa~Ll 260 (543)
T PF05536_consen 244 LTPSQRDPALNLAASLL 260 (543)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 4555666655555554
No 113
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=0.00031 Score=70.84 Aligned_cols=264 Identities=18% Similarity=0.215 Sum_probs=153.7
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhh
Q 009636 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL 196 (530)
Q Consensus 117 ~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~ 196 (530)
+...|.+.|++.+++.++.-++.-|+-..-++... .+...+-..|..++.-.-+.|..+++-+.-+... .
T Consensus 414 ~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~~-------eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~-~-- 483 (929)
T KOG2062|consen 414 ITDYLLQQLKTAENEVVRHGACLGLGLAGMGSANE-------EIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTAN-Q-- 483 (929)
T ss_pred HHHHHHHHHHhccchhhhhhhhhhccchhcccccH-------HHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCc-H--
Confidence 44555666655554556666655554444332221 1223445555544444455555555544332221 0
Q ss_pred HhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHH--HhccCC
Q 009636 197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALS--YLSDGT 274 (530)
Q Consensus 197 i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~--~l~~~~ 274 (530)
.++.-++..-.......+.+...--++-...+. ..+.=+.+-+++.+.|+-++.....++. +...+.
T Consensus 484 ----eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygr-------qe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgn 552 (929)
T KOG2062|consen 484 ----EAIEDMLTYAQETQHEKIIRGLAVGIALVVYGR-------QEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGN 552 (929)
T ss_pred ----HHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhh-------hhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCc
Confidence 123334444333344555554433333222221 1234456667777788888777665543 332222
Q ss_pred hHHHHHHHHhCcHHHHHHh-hCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHH
Q 009636 275 NDKIQAVIEAGVFPRLAEF-LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS 353 (530)
Q Consensus 275 ~~~~~~~~~~~~l~~L~~l-L~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~ 353 (530)
. +++..|+.. +++.+.++++.|+-+||-++..++++ ++..+.+|..++++.||.-++.+|+
T Consensus 553 n---------kair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~---------~~s~V~lLses~N~HVRyGaA~ALG 614 (929)
T KOG2062|consen 553 N---------KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ---------LPSTVSLLSESYNPHVRYGAAMALG 614 (929)
T ss_pred h---------hhHHHhhcccccccchHHHHHHHHHheeeEecChhh---------chHHHHHHhhhcChhhhhhHHHHHh
Confidence 2 556677776 67789999999999999999877654 4667778877779999999999999
Q ss_pred HHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChH
Q 009636 354 NITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPR 428 (530)
Q Consensus 354 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~ 428 (530)
-.|+++... ..+..|-.+..+...-||+.|+.++.-+....++..+... .++.+.+.+.+..++.+
T Consensus 615 IaCAGtG~~-------eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv--~~frk~l~kvI~dKhEd 680 (929)
T KOG2062|consen 615 IACAGTGLK-------EAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKV--NGFRKQLEKVINDKHED 680 (929)
T ss_pred hhhcCCCcH-------HHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchH--HHHHHHHHHHhhhhhhH
Confidence 999864321 1334444555666778999999999988876543333221 24455566666555544
No 114
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.01 E-value=5.8e-05 Score=69.08 Aligned_cols=186 Identities=16% Similarity=0.214 Sum_probs=118.5
Q ss_pred CCCCchhHHHHHHHHhHhhcCC--chhhHHHhh--cCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 009636 295 MHPSPSVLIPALRTVGNIVTGD--DMQTQCVIE--YQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEAN 370 (530)
Q Consensus 295 ~~~~~~~~~~al~~L~nl~~~~--~~~~~~~~~--~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~ 370 (530)
.+.+|..+..++..|..++.+. ......+.. ..++..+...+.+. ...+.+.||.++..++..........++ .
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~-Rs~v~~~A~~~l~~l~~~l~~~~~~~~~-~ 94 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL-RSKVSKTACQLLSDLARQLGSHFEPYAD-I 94 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHH-H
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHhHhHHHHHH-H
Confidence 6678999999999999998876 222222221 15666777777776 7789999999999998743344444433 5
Q ss_pred cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhc
Q 009636 371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNL 450 (530)
Q Consensus 371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~ 450 (530)
++|.|++.+.++...++..|..+|..++...+ ....+ .+..+.....+.++.++..++..+..++.........
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~--~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~ 168 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCS--YSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSV 168 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS---H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCC--cHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence 88999999998888999999999999999764 11111 1566777889999999999999999998766511100
Q ss_pred CCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009636 451 GNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL 495 (530)
Q Consensus 451 ~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~ 495 (530)
+.....-....+.|..+..+.+++|++.|...+..|+.
T Consensus 169 -------l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 169 -------LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp -------G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred -------hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 01000002245677888999999999999999988764
No 115
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.00 E-value=1.5e-05 Score=54.36 Aligned_cols=55 Identities=24% Similarity=0.610 Sum_probs=47.9
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHh
Q 009636 342 KSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNA 397 (530)
Q Consensus 342 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 397 (530)
+.+|..|+|+|++++...++...... ..+++.|+.+|.+++..||..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 46899999999999888777776644 46999999999999899999999999875
No 116
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.98 E-value=0.00034 Score=63.66 Aligned_cols=229 Identities=15% Similarity=0.173 Sum_probs=153.3
Q ss_pred hhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHh-CCChHHHHHhhCC--CCHHHHHHHHHHHHhhhCCCchhhhhHhh-
Q 009636 124 FLLREDYPQLQFEAAWALTNIASGTSEHTKVVID-HGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLS- 199 (530)
Q Consensus 124 ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~-~g~i~~L~~ll~~--~~~~i~~~a~~~L~nl~~~~~~~~~~i~~- 199 (530)
+++.-+ +-.+.-|+.|+.++.. .++.|...-. ...-..+..+++. ....++...+.+++-+..... +.+.+-+
T Consensus 157 l~Q~i~-~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~-~aqdi~K~ 233 (432)
T COG5231 157 LSQLID-FLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKE-CAQDIDKM 233 (432)
T ss_pred HHHHHH-HHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHH-HHHHHHHH
Confidence 444444 6678889999999998 5666666543 3344566777765 457889999999988875544 4433322
Q ss_pred cCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCCh---hhhhchHHHHHHhhcC--CChhHHHHHHHHHHHhccCC
Q 009636 200 QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF---DQVSPALPALAHLIHS--NDDEVLTDACWALSYLSDGT 274 (530)
Q Consensus 200 ~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~---~~~~~~l~~L~~ll~~--~d~~v~~~a~~~l~~l~~~~ 274 (530)
...+.-++++++....+.+.+-++.++.|++...|.... .....+.+..-.+++. .|++++.+.-..=..+....
T Consensus 234 ~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~ 313 (432)
T COG5231 234 DDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNT 313 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhh
Confidence 235666777776666888999999999999985433222 2223344444444432 35665554333322221111
Q ss_pred h------------------------------HHHHHHHH--hCcHHHHHHhhCCCCch-hHHHHHHHHhHhhcCCchhhH
Q 009636 275 N------------------------------DKIQAVIE--AGVFPRLAEFLMHPSPS-VLIPALRTVGNIVTGDDMQTQ 321 (530)
Q Consensus 275 ~------------------------------~~~~~~~~--~~~l~~L~~lL~~~~~~-~~~~al~~L~nl~~~~~~~~~ 321 (530)
. .+...+.+ ..++..|.++++..++. ...-||.-++.+++..|+...
T Consensus 314 k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~ 393 (432)
T COG5231 314 KKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINA 393 (432)
T ss_pred hhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHH
Confidence 1 11222222 14678888888887766 567788999999999999988
Q ss_pred HHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 009636 322 CVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT 356 (530)
Q Consensus 322 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~ 356 (530)
.+...|+=..++.++.++ +++|+-+|..++-.+.
T Consensus 394 vl~Kyg~k~~im~L~nh~-d~~VkfeAl~a~q~~i 427 (432)
T COG5231 394 VLSKYGVKEIIMNLINHD-DDDVKFEALQALQTCI 427 (432)
T ss_pred HHHHhhhHHHHHHHhcCC-CchhhHHHHHHHHHHH
Confidence 888999999999999999 9999999998876654
No 117
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.97 E-value=8.7e-05 Score=67.91 Aligned_cols=186 Identities=17% Similarity=0.086 Sum_probs=117.2
Q ss_pred cCCChHHHHHHHHHHHHhhcCC-CCCcHHHHHH--cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCC
Q 009636 83 WSNDSGVQYECTTQFRKLLSIE-RSPPIEEVIR--SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHG 159 (530)
Q Consensus 83 ~s~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~--~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g 159 (530)
.+.+++.+..|+..|+.++.+. .......+.. ..+++.+...+.+.. ..+...|+.++..++..-....+..+ ..
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~R-s~v~~~A~~~l~~l~~~l~~~~~~~~-~~ 94 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLR-SKVSKTACQLLSDLARQLGSHFEPYA-DI 94 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHH-HH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHhHhHHHHH-HH
Confidence 5688999999999999998874 1122233221 255667777777766 68899999999999874444444333 34
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCC-CCCh
Q 009636 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP-QPPF 238 (530)
Q Consensus 160 ~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~-~~~~ 238 (530)
++|.|+..+.++...+++.|..+|..++...+..... .+..+.... .+.++.++..++..+..+....+ ....
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-----~~~~l~~~~-~~Kn~~vR~~~~~~l~~~l~~~~~~~~~ 168 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI-----LLEILSQGL-KSKNPQVREECAEWLAIILEKWGSDSSV 168 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH-----HHHHHHHHT-T-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH-----HHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence 6899999999888899999999999998765511111 133334444 78899999999998888877654 1121
Q ss_pred h----hhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChH
Q 009636 239 D----QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTND 276 (530)
Q Consensus 239 ~----~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~ 276 (530)
. ....+++.+..++.+.+++++..+-.++..+...-++
T Consensus 169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 1 2356888999999999999999998888887544333
No 118
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.95 E-value=0.0006 Score=72.56 Aligned_cols=297 Identities=15% Similarity=0.102 Sum_probs=185.8
Q ss_pred hHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC----CC
Q 009636 161 VPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK----PQ 235 (530)
Q Consensus 161 i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~----~~ 235 (530)
++.+...++. .....+..|+..|..++..... ...-..++|.++.++ .++...++..|+.+|..+...- +.
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d---e~~LDRVlPY~v~l~-~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~ 499 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDD---EVKLDRVLPYFVHLL-MDSEADVRATALETLTELLALVRDIPPS 499 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch---HHHHhhhHHHHHHHh-cCchHHHHHHHHHHHHHHHhhccCCCcc
Confidence 4555555554 4566778888888888754321 111223788999999 7788899999988888765433 33
Q ss_pred CChhhhhchHHHHHHhhcC-CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhc
Q 009636 236 PPFDQVSPALPALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT 314 (530)
Q Consensus 236 ~~~~~~~~~l~~L~~ll~~-~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~ 314 (530)
....+..-++|.|..++.+ ....++...+.+|+.++.... .+...+.-.....+++..+.. +... .
T Consensus 500 daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~----rFle~~q~~~~~g~~n~~nse-------t~~~--~ 566 (1431)
T KOG1240|consen 500 DANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAY----RFLELTQELRQAGMLNDPNSE-------TAPE--Q 566 (1431)
T ss_pred cchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHH----HHHHHHHHHHhcccccCcccc-------cccc--c
Confidence 4455667788999999887 456677777777777764321 122222222222233433322 0000 0
Q ss_pred CCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHH
Q 009636 315 GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAI 394 (530)
Q Consensus 315 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL 394 (530)
..+...+.+ ..++-.....+|.++ ++-||+.-...|+-||.-... .=-+.=++..|+..|++.|+.+|..-...|
T Consensus 567 ~~~~~~~~L-~~~V~~~v~sLlsd~-~~~Vkr~Lle~i~~LC~FFGk---~ksND~iLshLiTfLNDkDw~LR~aFfdsI 641 (1431)
T KOG1240|consen 567 NYNTELQAL-HHTVEQMVSSLLSDS-PPIVKRALLESIIPLCVFFGK---EKSNDVILSHLITFLNDKDWRLRGAFFDSI 641 (1431)
T ss_pred ccchHHHHH-HHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHhhh---cccccchHHHHHHHhcCccHHHHHHHHhhc
Confidence 011122222 234445566677776 778888777777777651100 001123688999999999999988776666
Q ss_pred HHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHH
Q 009636 395 SNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESL 474 (530)
Q Consensus 395 ~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l 474 (530)
.-++..-.... ++.++++.|..-|.+.++-|+..|+++|..|++.+--.+. +. ...++.+.-+
T Consensus 642 ~gvsi~VG~rs----~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~--------~v-----~~i~~~v~Pl 704 (1431)
T KOG1240|consen 642 VGVSIFVGWRS----VSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKP--------AV-----KDILQDVLPL 704 (1431)
T ss_pred cceEEEEeeee----HHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchH--------HH-----HHHHHhhhhh
Confidence 65544221111 3446788888899999999999999999999988743221 11 2234566677
Q ss_pred hcCCCHHHHHHHHHHHHHhCCC
Q 009636 475 QTHDNAEIYEKSVKLLETYWLD 496 (530)
Q Consensus 475 ~~~~~~~v~~~a~~il~~~~~~ 496 (530)
.-|||.=|+..+..+|-.....
T Consensus 705 L~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 705 LCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred eeCchHHHHHHHHHHHHHHHhh
Confidence 8999999999998888765443
No 119
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.88 E-value=0.00071 Score=66.43 Aligned_cols=283 Identities=13% Similarity=0.085 Sum_probs=152.2
Q ss_pred hhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCC
Q 009636 81 GVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGA 160 (530)
Q Consensus 81 ~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~ 160 (530)
++.+....+++++++.+..+.... .....++ ..+..|-.+|+++. ...|+.|+++|..++-..|+... +.
T Consensus 272 wls~k~emV~lE~Ar~v~~~~~~n---v~~~~~~-~~vs~L~~fL~s~r-v~~rFsA~Riln~lam~~P~kv~-vc---- 341 (898)
T COG5240 272 WLSDKFEMVFLEAARAVCALSEEN---VGSQFVD-QTVSSLRTFLKSTR-VVLRFSAMRILNQLAMKYPQKVS-VC---- 341 (898)
T ss_pred HhcCcchhhhHHHHHHHHHHHHhc---cCHHHHH-HHHHHHHHHHhcch-HHHHHHHHHHHHHHHhhCCceee-ec----
Confidence 344445678888888877765432 1111111 23666777777777 78888888888888875443221 11
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhh
Q 009636 161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240 (530)
Q Consensus 161 i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~ 240 (530)
=+-+-.++.+.+..+...|+.+|..- +..+.-+.++. .++.++.-+ +......+..++..||...|......
T Consensus 342 N~evEsLIsd~Nr~IstyAITtLLKT--Gt~e~idrLv~--~I~sfvhD~----SD~FKiI~ida~rsLsl~Fp~k~~s~ 413 (898)
T COG5240 342 NKEVESLISDENRTISTYAITTLLKT--GTEETIDRLVN--LIPSFVHDM----SDGFKIIAIDALRSLSLLFPSKKLSY 413 (898)
T ss_pred ChhHHHHhhcccccchHHHHHHHHHc--CchhhHHHHHH--HHHHHHHhh----ccCceEEeHHHHHHHHhhCcHHHHHH
Confidence 13344455555555555555554432 22222223222 233333322 33333444455555555544333332
Q ss_pred hhchHHHHHHhh-cCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchh
Q 009636 241 VSPALPALAHLI-HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ 319 (530)
Q Consensus 241 ~~~~l~~L~~ll-~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~ 319 (530)
+..|...| +...-+...++..++..+....++... .++..|..++.+... -.-++++|+-+....+..
T Consensus 414 ----l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skE-----raLe~LC~fIEDcey--~~I~vrIL~iLG~EgP~a 482 (898)
T COG5240 414 ----LDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKE-----RALEVLCTFIEDCEY--HQITVRILGILGREGPRA 482 (898)
T ss_pred ----HHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHH-----HHHHHHHHHHhhcch--hHHHHHHHHHhcccCCCC
Confidence 23333322 234566777777777777766654333 345667777766541 223344444444322211
Q ss_pred hHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009636 320 TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS 399 (530)
Q Consensus 320 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 399 (530)
.. ....+..+..-+--+ +.-+|..|..+|+.++..-.+. +....+...|-+++.+.|.+||..|..++.++-.
T Consensus 483 ~~---P~~yvrhIyNR~iLE-N~ivRsaAv~aLskf~ln~~d~---~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~ 555 (898)
T COG5240 483 KT---PGKYVRHIYNRLILE-NNIVRSAAVQALSKFALNISDV---VSPQSVENALKRCLNDQDDEVRDRASFLLRNMRL 555 (898)
T ss_pred CC---cchHHHHHHHHHHHh-hhHHHHHHHHHHHHhccCcccc---ccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhh
Confidence 10 011233333333334 6678999999998887632111 2223355677788999999999999999999864
No 120
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.86 E-value=5.2e-05 Score=57.61 Aligned_cols=87 Identities=29% Similarity=0.421 Sum_probs=68.9
Q ss_pred HHHHHHhh-cCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhh
Q 009636 118 VPRFVEFL-LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL 196 (530)
Q Consensus 118 v~~Lv~ll-~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~ 196 (530)
+|.|++.| ++++ +.++..++++|+.+.. + .+++.|+.+++++++.++..|+++|+.+-
T Consensus 1 i~~L~~~l~~~~~-~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPD-PQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRIG--------- 59 (88)
T ss_dssp HHHHHHHHHTSSS-HHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH---------
T ss_pred CHHHHHHHhcCCC-HHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------
Confidence 57899999 5555 9999999999995432 2 34789999999999999999999999883
Q ss_pred HhhcCChHHHHHhhcCCCchhHHHHHHHHhh
Q 009636 197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLS 227 (530)
Q Consensus 197 i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~ 227 (530)
....++.|.+++.++.+..++..++++|+
T Consensus 60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 --DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 12378889999966667777888888874
No 121
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.83 E-value=0.0051 Score=58.76 Aligned_cols=224 Identities=14% Similarity=0.122 Sum_probs=163.7
Q ss_pred hcCCHHHHHHhhcCCChHHHHHHHHHHHHhhcCC----CCC----cHHHHHHcCCHHHHHHhhcCCC-----CHHHHHHH
Q 009636 71 KLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIE----RSP----PIEEVIRSGVVPRFVEFLLRED-----YPQLQFEA 137 (530)
Q Consensus 71 ~~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~----~~~----~~~~~~~~g~v~~Lv~ll~~~~-----~~~i~~~a 137 (530)
.++.++.++.+|.+++.++-...+..+..+.... ... -++.+++.++++.|++-+..-+ ...-.+.+
T Consensus 123 eln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~ 202 (536)
T KOG2734|consen 123 ELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNT 202 (536)
T ss_pred HhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHH
Confidence 4578999999999999999999999888876432 111 2567788999999999876533 12234566
Q ss_pred HHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc----
Q 009636 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN---- 211 (530)
Q Consensus 138 ~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~---- 211 (530)
+..+-|+..-.+.....+++.|.+.-|+.-+.. +-..-...|..+|+-+..++.+.+...-...++..+++.+.
T Consensus 203 L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~ 282 (536)
T KOG2734|consen 203 LAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKR 282 (536)
T ss_pred HHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhc
Confidence 778889988888899999999888887775533 44556778888888888887777777778888999888774
Q ss_pred C----CCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh--HHHHHHHHhC
Q 009636 212 G----QPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN--DKIQAVIEAG 285 (530)
Q Consensus 212 ~----~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~--~~~~~~~~~~ 285 (530)
. ....++.++...+|+.+.....+.........+....-+++. ....+..++.+|-++..+++ .....+++..
T Consensus 283 ~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~l 361 (536)
T KOG2734|consen 283 HDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEIL 361 (536)
T ss_pred cCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 1 225678888888888888776666655556666665555554 55567778888888887765 5556677777
Q ss_pred cHHHHHHhhC
Q 009636 286 VFPRLAEFLM 295 (530)
Q Consensus 286 ~l~~L~~lL~ 295 (530)
++..++.+.-
T Consensus 362 GLrtiF~~FM 371 (536)
T KOG2734|consen 362 GLRTIFPLFM 371 (536)
T ss_pred hHHHHHHHHh
Confidence 7777666543
No 122
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.83 E-value=0.026 Score=59.52 Aligned_cols=387 Identities=15% Similarity=0.106 Sum_probs=225.4
Q ss_pred HHHHHHhhcCCCh-HHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009636 75 LPVMVAGVWSNDS-GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (530)
Q Consensus 75 l~~l~~~l~s~~~-~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 153 (530)
+-.++..+..++. .-+..++..+......... ..++...-+..-++.++.. +.++..++.-+++++..-..
T Consensus 199 lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~----~~vk~elr~~~~~lc~d~~-~~Vr~~~a~~l~~~a~~~~~--- 270 (759)
T KOG0211|consen 199 LVPLLKRLATGDWFQSRLSACGLFGKLYVSLPD----DAVKRELRPIVQSLCQDDT-PMVRRAVASNLGNIAKVLES--- 270 (759)
T ss_pred HHHHHHHccchhhhhcchhhhhhhHHhccCCCh----HHHHHHHHHHHHhhccccc-hhhHHHHHhhhHHHHHHHHH---
Confidence 3444555554432 2345566666655433211 3344445666666766666 99999999999999984333
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC
Q 009636 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (530)
Q Consensus 154 ~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~ 233 (530)
.....++++.+.++..+....+++.|.-.+.++...-...- . ....+.+.+++.. .+.+..+........+-++..-
T Consensus 271 ~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~-d-~~~~~~~~l~~~~-~d~~~~v~~~~~~~~~~L~~~~ 347 (759)
T KOG0211|consen 271 EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD-D-VVKSLTESLVQAV-EDGSWRVSYMVADKFSELSSAV 347 (759)
T ss_pred HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch-h-hhhhhhHHHHHHh-cChhHHHHHHHhhhhhhHHHHh
Confidence 56678899999999988888899999998888874321100 1 1222566666666 4555544444443333333221
Q ss_pred CC-CCh----------------------------------------hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhcc
Q 009636 234 PQ-PPF----------------------------------------DQVSPALPALAHLIHSNDDEVLTDACWALSYLSD 272 (530)
Q Consensus 234 ~~-~~~----------------------------------------~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~ 272 (530)
.. ... .....++|.+-.+..+.+..++...+..+..+..
T Consensus 348 ~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p 427 (759)
T KOG0211|consen 348 GPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSP 427 (759)
T ss_pred ccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCc
Confidence 10 000 0001112333333333333333333322222211
Q ss_pred CChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHH
Q 009636 273 GTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTV 352 (530)
Q Consensus 273 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L 352 (530)
-.. ....+ ....+.+...+++..+.++....+.+..+-...+...........++.+..+-... ...++.+..+.+
T Consensus 428 ~~~--k~~ti-~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~-~wRvr~ail~~i 503 (759)
T KOG0211|consen 428 ILP--KERTI-SELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDL-LWRVRLAILEYI 503 (759)
T ss_pred cCC--cCcCc-cccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccch-hHHHHHHHHHHH
Confidence 100 00000 02345555666667777887777777666554444444445566777777777766 778888888888
Q ss_pred HHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHH
Q 009636 353 SNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTV 432 (530)
Q Consensus 353 ~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~ 432 (530)
-.++.... ..+++...-+.+...+.+....+++.|+..+.-++..-..+. .....++.++.+...++...+..
T Consensus 504 p~la~q~~---~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w----~~~~~i~k~L~~~~q~~y~~R~t 576 (759)
T KOG0211|consen 504 PQLALQLG---VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEW----ARLEEIPKLLAMDLQDNYLVRMT 576 (759)
T ss_pred HHHHHhhh---hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcch----hHHHhhHHHHHHhcCcccchhhH
Confidence 77765321 223333344555555666677899999999888876322121 12234666666666667788888
Q ss_pred HHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCCC
Q 009636 433 CLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDD 497 (530)
Q Consensus 433 al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~~~ 497 (530)
.+.++..+....... .+. ...+..+..+..++.+.|+-.+.+.+.++-...
T Consensus 577 ~l~si~~la~v~g~e---------i~~-----~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L 627 (759)
T KOG0211|consen 577 TLFSIHELAEVLGQE---------ITC-----EDLLPVFLDLVKDPVANVRINVAKHLPKILKLL 627 (759)
T ss_pred HHHHHHHHHHHhccH---------HHH-----HHHhHHHHHhccCCchhhhhhHHHHHHHHHhhc
Confidence 888888777655321 123 334678888999999999999988888875543
No 123
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.81 E-value=0.015 Score=57.49 Aligned_cols=309 Identities=13% Similarity=0.131 Sum_probs=174.6
Q ss_pred HHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCc
Q 009636 136 EAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPK 215 (530)
Q Consensus 136 ~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~ 215 (530)
..+++...+...+++.+..+ .|.|-..+++.-..+.-.++++++.++...- ....++ ..+..|-.+| .++.
T Consensus 246 ~lvr~~~~ll~~n~q~~~q~-----rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv--~~~~~~-~~vs~L~~fL-~s~r 316 (898)
T COG5240 246 LLVRATVELLKENSQALLQL-----RPFLNSWLSDKFEMVFLEAARAVCALSEENV--GSQFVD-QTVSSLRTFL-KSTR 316 (898)
T ss_pred ehHHHHHHHHHhChHHHHHH-----HHHHHHHhcCcchhhhHHHHHHHHHHHHhcc--CHHHHH-HHHHHHHHHH-hcch
Confidence 34455555555555555544 3667777777667788888888888775431 111111 1455555556 7888
Q ss_pred hhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhC
Q 009636 216 LSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM 295 (530)
Q Consensus 216 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~ 295 (530)
...+-.|+.+|..|+...|.... -+-+-+-.++.+.+..+..+|+.+|.. .+.++.+..++. .++.++.=++
T Consensus 317 v~~rFsA~Riln~lam~~P~kv~----vcN~evEsLIsd~Nr~IstyAITtLLK--TGt~e~idrLv~--~I~sfvhD~S 388 (898)
T COG5240 317 VVLRFSAMRILNQLAMKYPQKVS----VCNKEVESLISDENRTISTYAITTLLK--TGTEETIDRLVN--LIPSFVHDMS 388 (898)
T ss_pred HHHHHHHHHHHHHHHhhCCceee----ecChhHHHHhhcccccchHHHHHHHHH--cCchhhHHHHHH--HHHHHHHhhc
Confidence 88999999999999987654332 223345556666677777766665544 233444443332 2333333333
Q ss_pred CCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHH
Q 009636 296 HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPL 375 (530)
Q Consensus 296 ~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L 375 (530)
++-.-+...|++.|+.... .... ..+..|...|......+.++.+..+|+.+....|+.... ++..|
T Consensus 389 D~FKiI~ida~rsLsl~Fp---~k~~-----s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEr-----aLe~L 455 (898)
T COG5240 389 DGFKIIAIDALRSLSLLFP---SKKL-----SYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKER-----ALEVL 455 (898)
T ss_pred cCceEEeHHHHHHHHhhCc---HHHH-----HHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHH-----HHHHH
Confidence 3333455556666655542 2211 234556655554436778888888888887765554333 44567
Q ss_pred HHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCc
Q 009636 376 VALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDV 455 (530)
Q Consensus 376 ~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~ 455 (530)
+..+.+-+ .-+-+...|+-+-..+..... ....+..+.+-+--++.-++..|+.+|.++.-..+..
T Consensus 456 C~fIEDce--y~~I~vrIL~iLG~EgP~a~~----P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~-------- 521 (898)
T COG5240 456 CTFIEDCE--YHQITVRILGILGREGPRAKT----PGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDV-------- 521 (898)
T ss_pred HHHHhhcc--hhHHHHHHHHHhcccCCCCCC----cchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccc--------
Confidence 77765442 333344444444333210000 0012333333333456678888888887764322211
Q ss_pred hhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009636 456 NVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW 494 (530)
Q Consensus 456 ~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~ 494 (530)
+.-......+..+.++.+++|+++|...++.+-
T Consensus 522 ------~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 522 ------VSPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred ------ccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 111223467788899999999999999888653
No 124
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=0.0087 Score=63.53 Aligned_cols=261 Identities=13% Similarity=0.082 Sum_probs=159.4
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhh
Q 009636 116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCR 194 (530)
Q Consensus 116 g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~ 194 (530)
+++..|...+++.+ ..++-.|+..++.++...+... . ..++...+.++.- .++..-..++.+|+.++...--.-
T Consensus 341 ~vie~Lls~l~d~d-t~VrWSaAKg~grvt~rlp~~L---a-d~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp 415 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTD-TVVRWSAAKGLGRVTSRLPPEL---A-DQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP 415 (1133)
T ss_pred HHHHHHHHhccCCc-chhhHHHHHHHHHHHccCcHHH---H-HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence 56777888888888 7999999999999998666322 1 1345566665544 335556688889999985543222
Q ss_pred hhHhhcCChHHHHHhhcC-------CCchhHHHHHHHHhhhhccCCCCCC-hhhhhchHHH-HHHhhcCCChhHHHHHHH
Q 009636 195 DLVLSQGGLVPLLAQLNG-------QPKLSMLRNATWTLSNFCRGKPQPP-FDQVSPALPA-LAHLIHSNDDEVLTDACW 265 (530)
Q Consensus 195 ~~i~~~~~i~~Ll~ll~~-------~~~~~~~~~a~~~L~~L~~~~~~~~-~~~~~~~l~~-L~~ll~~~d~~v~~~a~~ 265 (530)
..+. .+++.+++-+.. +....++.+||++++.+++...... ......+.+. |...+.+.+-.++..|..
T Consensus 416 s~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsA 493 (1133)
T KOG1943|consen 416 SLLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASA 493 (1133)
T ss_pred HHHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHH
Confidence 2222 256666665532 2356789999999999998863221 2233334443 333444566677777777
Q ss_pred HHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHh-hcCCCchhH
Q 009636 266 ALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNL-LSGNYKKSI 344 (530)
Q Consensus 266 ~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~l-L~~~~~~~v 344 (530)
++-........ .. .+++ |+...+.-....+.++...++.-....+..+..+++ .++.. +.+= +..+
T Consensus 494 AlqE~VGR~~n-~p-----~Gi~-Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~-----~L~t~Kv~HW-d~~i 560 (1133)
T KOG1943|consen 494 ALQENVGRQGN-FP-----HGIS-LISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFN-----HLLTKKVCHW-DVKI 560 (1133)
T ss_pred HHHHHhccCCC-CC-----Cchh-hhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHH-----HHHhcccccc-cHHH
Confidence 77554422110 00 1111 222222223334555555555555555555544443 22222 4444 8899
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcC
Q 009636 345 KKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG 400 (530)
Q Consensus 345 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 400 (530)
|..++|+|.++....++ ......++++++...+.+...+..+..+.+.++..
T Consensus 561 relaa~aL~~Ls~~~pk----~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~ 612 (1133)
T KOG1943|consen 561 RELAAYALHKLSLTEPK----YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGA 612 (1133)
T ss_pred HHHHHHHHHHHHHhhHH----hhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHH
Confidence 99999999998765554 33457889999988888888888777777776654
No 125
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.79 E-value=0.00018 Score=55.05 Aligned_cols=94 Identities=18% Similarity=0.338 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCC
Q 009636 345 KKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC 424 (530)
Q Consensus 345 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~ 424 (530)
|+.+.++|+.++.+-+..+...++ .++++++..+.+.+.+||..|+.+|.|++.....+...++ ..+.+.|..++.+
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~-~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f--~~IF~~L~kl~~D 79 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLD-EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYF--NEIFDALCKLSAD 79 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHcC
Confidence 667888888887765555555544 5899999999999999999999999999986544444433 3578899999999
Q ss_pred CChHHHHHHHHHHHHHHH
Q 009636 425 PDPRIVTVCLEGLENILK 442 (530)
Q Consensus 425 ~~~~~~~~al~~l~~ll~ 442 (530)
.|+.++. +.+.|.++++
T Consensus 80 ~d~~Vr~-~a~~Ld~llk 96 (97)
T PF12755_consen 80 PDENVRS-AAELLDRLLK 96 (97)
T ss_pred CchhHHH-HHHHHHHHhc
Confidence 9999886 4577777764
No 126
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.79 E-value=0.0033 Score=59.99 Aligned_cols=224 Identities=16% Similarity=0.091 Sum_probs=160.5
Q ss_pred hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC---------hHHHHHHHHhCcHHHHHHhhCCCCch------hHH
Q 009636 239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT---------NDKIQAVIEAGVFPRLAEFLMHPSPS------VLI 303 (530)
Q Consensus 239 ~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~---------~~~~~~~~~~~~l~~L~~lL~~~~~~------~~~ 303 (530)
...-.+++.|+.+|.+.+.+|....+..+..+++.+ ...+..+++.++++.|++.+..-+.+ -..
T Consensus 121 lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~ 200 (536)
T KOG2734|consen 121 LVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVH 200 (536)
T ss_pred HHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhH
Confidence 344678899999999999999999999998887432 24567788889999999988654333 355
Q ss_pred HHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHh--
Q 009636 304 PALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-YKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLE-- 380 (530)
Q Consensus 304 ~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-- 380 (530)
.++..+-|++...+.....+.+.|.+.+|+.-+... .-...+..|.-+++-+...+.+....+-.-+++..+++-+.
T Consensus 201 ~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~y 280 (536)
T KOG2734|consen 201 NTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVY 280 (536)
T ss_pred HHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchh
Confidence 678888999988888888888999999998865433 13456777778888777766666666666677887777552
Q ss_pred -cC------chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCC
Q 009636 381 -NA------EFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNT 453 (530)
Q Consensus 381 -~~------~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~ 453 (530)
.. +.+.-.+...+||.+.. .+.....++...++....-++.. ....+..++.+|...+...+.
T Consensus 281 k~~dP~~~~E~EmmeNLFdcLCs~lm--~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~g------- 350 (536)
T KOG2734|consen 281 KRHDPATVDEEEMMENLFDCLCSLLM--APANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEG------- 350 (536)
T ss_pred hccCCCCcCHHHHHHHHHHHHHHHhc--ChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCc-------
Confidence 11 34566777788888877 45677777766666655555544 444566777777777654432
Q ss_pred CchhhHHHhhhhccHHHHHHH
Q 009636 454 DVNVFTQMIDDAEGLEKIESL 474 (530)
Q Consensus 454 ~~~~~~~~l~~~~~~~~l~~l 474 (530)
.+++..|.+.+|+..+-.+
T Consensus 351 --t~~C~kfVe~lGLrtiF~~ 369 (536)
T KOG2734|consen 351 --TPNCNKFVEILGLRTIFPL 369 (536)
T ss_pred --hHHHHHHHHHHhHHHHHHH
Confidence 2357778888888887665
No 127
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.79 E-value=0.0007 Score=65.06 Aligned_cols=177 Identities=17% Similarity=0.138 Sum_probs=96.5
Q ss_pred hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhc----CCch---hhHHHhhcCch
Q 009636 257 DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT----GDDM---QTQCVIEYQAL 329 (530)
Q Consensus 257 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~----~~~~---~~~~~~~~~~l 329 (530)
.-+...+++++.-+.-++..+.....-......+...+.+..-..+..+.|+++||.. +.+. ....+.. -.+
T Consensus 405 ~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll 483 (728)
T KOG4535|consen 405 RLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLL 483 (728)
T ss_pred HHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHH
Confidence 3356666777666554444333333334556667777777777889999999999974 2222 2222221 122
Q ss_pred HHHHHhhc--CCCchhHHHHHHHHHHHHhcCCHHHHHHHHH-------hCcHHHHHH-HHhcCchhHHHHHHHHHHHhhc
Q 009636 330 PCLLNLLS--GNYKKSIKKEACWTVSNITAGNREQIQAVIE-------ANIIGPLVA-LLENAEFDIKKEAAWAISNATS 399 (530)
Q Consensus 330 ~~L~~lL~--~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-------~~~i~~L~~-ll~~~~~~v~~~a~~aL~nl~~ 399 (530)
..++..-. +.....|+.+|..+|+|+.. ..+.+.+ .+-+..++. ..-....+||-+||++++|+..
T Consensus 484 ~~~~~~A~~~~Ad~dkV~~navraLgnllQ----vlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfk 559 (728)
T KOG4535|consen 484 LKMLRSAIEASADKDKVKSNAVRALGNLLQ----FLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFK 559 (728)
T ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHhhHHH----HHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhc
Confidence 22222221 12256899999999999853 2222221 122222222 2223468999999999999998
Q ss_pred CCCHHHHHHHHHcCChHHHHhccC-CCChHHHHHHHHHHH
Q 009636 400 GGTHEQIKFLVIQGCIKPLCDLLV-CPDPRIVTVCLEGLE 438 (530)
Q Consensus 400 ~~~~~~~~~l~~~~~i~~L~~lL~-~~~~~~~~~al~~l~ 438 (530)
+........=+-..+.+.|+.++. ..+-+++..|..+|.
T Consensus 560 n~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~ 599 (728)
T KOG4535|consen 560 NPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALS 599 (728)
T ss_pred CccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhc
Confidence 653211000011123556666654 345566666655543
No 128
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.77 E-value=9.7e-05 Score=56.07 Aligned_cols=86 Identities=33% Similarity=0.468 Sum_probs=68.8
Q ss_pred HHHHHHhh-cCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009636 75 LPVMVAGV-WSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (530)
Q Consensus 75 l~~l~~~l-~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 153 (530)
++.|++.| .++++.++..|+++|.++-. ..++|.|++++++++ +.++..|+++|+.+..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~------------~~~~~~L~~~l~d~~-~~vr~~a~~aL~~i~~------- 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD------------PEAIPALIELLKDED-PMVRRAAARALGRIGD------- 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH------------HHHHHHHHHHHTSSS-HHHHHHHHHHHHCCHH-------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC------------HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC-------
Confidence 57889988 78899999999999985421 135899999998877 9999999999998742
Q ss_pred HHHhCCChHHHHHhhCCC-CHHHHHHHHHHHH
Q 009636 154 VVIDHGAVPIFVKLLYSP-SDDVREQAVWALG 184 (530)
Q Consensus 154 ~~~~~g~i~~L~~ll~~~-~~~i~~~a~~~L~ 184 (530)
...++.|.+++.++ +..++..|+++|+
T Consensus 61 ----~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 ----PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ----HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 23678899988774 5567899998885
No 129
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.77 E-value=0.022 Score=59.57 Aligned_cols=141 Identities=17% Similarity=0.139 Sum_probs=107.0
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009636 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 153 (530)
.++.+++.+.+.|.+++...--.+...+... |. .++- +++.+.+=+++++ +.+|..|++.++.+-. ++...
T Consensus 56 Lf~dViK~~~trd~ElKrL~ylYl~~yak~~--P~--~~lL--avNti~kDl~d~N-~~iR~~AlR~ls~l~~--~el~~ 126 (757)
T COG5096 56 LFPDVIKNVATRDVELKRLLYLYLERYAKLK--PE--LALL--AVNTIQKDLQDPN-EEIRGFALRTLSLLRV--KELLG 126 (757)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhccC--HH--HHHH--HHHHHHhhccCCC-HHHHHHHHHHHHhcCh--HHHHH
Confidence 5677777777778888777777777776552 32 1111 4777788888888 9999999999987655 33332
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009636 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (530)
Q Consensus 154 ~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~ 232 (530)
.+++.+.+++.++++.+|..|+.++.++-.-++ +.+.+.|.+..+..++ .+.++.+..+|+.+|..+...
T Consensus 127 -----~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~---~l~~~~g~~~~l~~l~-~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 127 -----NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK---DLYHELGLIDILKELV-ADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred -----HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH---hhhhcccHHHHHHHHh-hCCCchHHHHHHHHHHHhchh
Confidence 357889999999999999999999999975543 3556666777676777 889999999999999998876
No 130
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.73 E-value=0.0035 Score=55.93 Aligned_cols=244 Identities=19% Similarity=0.276 Sum_probs=135.2
Q ss_pred CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHH
Q 009636 85 NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIF 164 (530)
Q Consensus 85 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L 164 (530)
.....++.|+-.|+++.... .+..+.+...+++ ..++.+.+.+|+.... ..+++.|
T Consensus 17 ~~l~~r~rALf~Lr~l~~~~------------~i~~i~ka~~d~s-~llkhe~ay~LgQ~~~-----------~~Av~~l 72 (289)
T KOG0567|consen 17 QPLQNRFRALFNLRNLLGPA------------AIKAITKAFIDDS-ALLKHELAYVLGQMQD-----------EDAVPVL 72 (289)
T ss_pred HHHHHHHHHHHhhhccCChH------------HHHHHHHhcccch-hhhccchhhhhhhhcc-----------chhhHHH
Confidence 34456777887777776431 1334444444333 4555566666655444 2345666
Q ss_pred HHhhCC--CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC---------
Q 009636 165 VKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK--------- 233 (530)
Q Consensus 165 ~~ll~~--~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~--------- 233 (530)
+..+.. ..+-+|..|..+|+.+. .+. ..+.+-+.. +++-.++...+..++..+-...
T Consensus 73 ~~vl~desq~pmvRhEAaealga~~--~~~---------~~~~l~k~~-~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~ 140 (289)
T KOG0567|consen 73 VEVLLDESQEPMVRHEAAEALGAIG--DPE---------SLEILTKYI-KDPCKEVRETCELAIKRLEWKDIIDKIANSS 140 (289)
T ss_pred HHHhcccccchHHHHHHHHHHHhhc--chh---------hHHHHHHHh-cCCccccchHHHHHHHHHHHhhccccccccC
Confidence 666544 34556666677776664 111 222333333 3444444444444444332221
Q ss_pred ------CCCChhhhhchHHHHHH-hhcCCChhH-HHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHH
Q 009636 234 ------PQPPFDQVSPALPALAH-LIHSNDDEV-LTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPA 305 (530)
Q Consensus 234 ------~~~~~~~~~~~l~~L~~-ll~~~d~~v-~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a 305 (530)
|.+. ....-+.-+-. ++..+.+.. +..+...|.|+. .++.+ ..|.+-+..++.-.+..+
T Consensus 141 p~~SvdPa~p--~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g--~EeaI---------~al~~~l~~~SalfrhEv 207 (289)
T KOG0567|consen 141 PYISVDPAPP--ANLSSVHELRAELLDETKPLFERYRAMFYLRNIG--TEEAI---------NALIDGLADDSALFRHEV 207 (289)
T ss_pred ccccCCCCCc--cccccHHHHHHHHHhcchhHHHHHhhhhHhhccC--cHHHH---------HHHHHhcccchHHHHHHH
Confidence 1111 11122333333 333333333 334555555542 22323 334455666777789999
Q ss_pred HHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCch
Q 009636 306 LRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-YKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEF 384 (530)
Q Consensus 306 l~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~ 384 (530)
..++|.+-+. -.++.|.+.|... .++.||.+|+.+|+-++.. + .++.|.+.+.+.++
T Consensus 208 AfVfGQl~s~-----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e--~---------~~~vL~e~~~D~~~ 265 (289)
T KOG0567|consen 208 AFVFGQLQSP-----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIADE--D---------CVEVLKEYLGDEER 265 (289)
T ss_pred HHHHhhccch-----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH--H---------HHHHHHHHcCCcHH
Confidence 9999988642 2366777777543 2789999999999998643 2 56777888888888
Q ss_pred hHHHHHHHHHHHhhc
Q 009636 385 DIKKEAAWAISNATS 399 (530)
Q Consensus 385 ~v~~~a~~aL~nl~~ 399 (530)
-|++.+..+|.-+-.
T Consensus 266 vv~esc~valdm~ey 280 (289)
T KOG0567|consen 266 VVRESCEVALDMLEY 280 (289)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888887765543
No 131
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.69 E-value=5.1e-05 Score=51.65 Aligned_cols=55 Identities=27% Similarity=0.444 Sum_probs=46.7
Q ss_pred chhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHH
Q 009636 299 PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI 355 (530)
Q Consensus 299 ~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl 355 (530)
|.++..|+++|++++...+..... ....+++.|..+|.++ ++.||..|+|+|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~-~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDD-DDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSS-SHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCC-CHHHHHHHHHHHhcC
Confidence 468999999999998877766544 4557899999999988 789999999999976
No 132
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.62 E-value=0.036 Score=58.00 Aligned_cols=168 Identities=18% Similarity=0.192 Sum_probs=129.3
Q ss_pred hcCCCCHHHHHHHHH-HHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCCh
Q 009636 125 LLREDYPQLQFEAAW-ALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGL 203 (530)
Q Consensus 125 l~~~~~~~i~~~a~~-~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i 203 (530)
+.+.+ +.-+..|+. ++..++.|.+ .. ..++.+++...+.+.+++..+-.-|.+++...|.. .++ ++
T Consensus 28 l~s~n-~~~kidAmK~iIa~M~~G~d--ms-----sLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~--~lL---av 94 (757)
T COG5096 28 LESSN-DYKKIDAMKKIIAQMSLGED--MS-----SLFPDVIKNVATRDVELKRLLYLYLERYAKLKPEL--ALL---AV 94 (757)
T ss_pred ccccC-hHHHHHHHHHHHHHHhcCCC--hH-----HHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHH--HHH---HH
Confidence 55555 566777774 6667777554 11 23567777777888999998888888888887742 222 56
Q ss_pred HHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHH
Q 009636 204 VPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE 283 (530)
Q Consensus 204 ~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~ 283 (530)
..+.+-+ +++++.++..|+.+++.+=.. .....+++.+.+++.++++.|+..|+.|+..+-.-+.+. +.+
T Consensus 95 Nti~kDl-~d~N~~iR~~AlR~ls~l~~~------el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l---~~~ 164 (757)
T COG5096 95 NTIQKDL-QDPNEEIRGFALRTLSLLRVK------ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDL---YHE 164 (757)
T ss_pred HHHHhhc-cCCCHHHHHHHHHHHHhcChH------HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhh---hhc
Confidence 7777878 889999999999998866332 455778889999999999999999999999998666543 456
Q ss_pred hCcHHHHHHhhCCCCchhHHHHHHHHhHhhcC
Q 009636 284 AGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG 315 (530)
Q Consensus 284 ~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~ 315 (530)
.|.+..+..++.+.++.+...|+.++..+...
T Consensus 165 ~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 165 LGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred ccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 67888888899999999999999999888653
No 133
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.012 Score=62.38 Aligned_cols=257 Identities=14% Similarity=0.130 Sum_probs=157.2
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCCh
Q 009636 159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF 238 (530)
Q Consensus 159 g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~ 238 (530)
+++..|+..+++.+..++=.|+..++.++...|. . +...++...+.++....+...-..+|.+|+.|+... -...
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~---~-Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rG-lLlp 415 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPP---E-LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRG-LLLP 415 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcH---H-HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC-Ccch
Confidence 5677888888888999999999999999977762 1 222366777776644445666779999999999875 2223
Q ss_pred hhhhchHHHHHHhhcC--------CChhHHHHHHHHHHHhccCCh-HHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHH
Q 009636 239 DQVSPALPALAHLIHS--------NDDEVLTDACWALSYLSDGTN-DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV 309 (530)
Q Consensus 239 ~~~~~~l~~L~~ll~~--------~d~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L 309 (530)
.....++|.+.+.+.- ....|+..+|..++.++.... .....+++.=.-..|...+-+.+-.+|..|..++
T Consensus 416 s~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAl 495 (1133)
T KOG1943|consen 416 SLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAAL 495 (1133)
T ss_pred HHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHH
Confidence 3456778877776642 245688887777777765432 2223233322223344455677888898888877
Q ss_pred hHhhcCCchhhHHHhhcCchHHHHHhhcCCC--chhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHH-HhcCchhH
Q 009636 310 GNIVTGDDMQTQCVIEYQALPCLLNLLSGNY--KKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVAL-LENAEFDI 386 (530)
Q Consensus 310 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~--~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~l-l~~~~~~v 386 (530)
--.+.... -.|.=+.++.+.. .-..+.++...++--.+..+..+..+++ .|+.- +.+.|..+
T Consensus 496 qE~VGR~~----------n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~-----~L~t~Kv~HWd~~i 560 (1133)
T KOG1943|consen 496 QENVGRQG----------NFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFN-----HLLTKKVCHWDVKI 560 (1133)
T ss_pred HHHhccCC----------CCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHH-----HHHhcccccccHHH
Confidence 65543211 1111112222210 2233444444555544444544444443 22222 55568999
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHH
Q 009636 387 KKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENI 440 (530)
Q Consensus 387 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~l 440 (530)
|..++++|.+++.. .+++ ...+.+++|++...+.+..++..+.-+...+
T Consensus 561 relaa~aL~~Ls~~-~pk~----~a~~~L~~lld~~ls~~~~~r~g~~la~~ev 609 (1133)
T KOG1943|consen 561 RELAAYALHKLSLT-EPKY----LADYVLPPLLDSTLSKDASMRHGVFLAAGEV 609 (1133)
T ss_pred HHHHHHHHHHHHHh-hHHh----hcccchhhhhhhhcCCChHHhhhhHHHHHHH
Confidence 99999999998774 2332 4456788888888888877666554444444
No 134
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.58 E-value=0.062 Score=53.87 Aligned_cols=311 Identities=15% Similarity=0.114 Sum_probs=176.9
Q ss_pred HHHHHHhhcC-----CChHHHHHHHHHHHHhhcCCCCC----cHHHHHHcCCHHHHHHhhcCCC------CHHHHHHHHH
Q 009636 75 LPVMVAGVWS-----NDSGVQYECTTQFRKLLSIERSP----PIEEVIRSGVVPRFVEFLLRED------YPQLQFEAAW 139 (530)
Q Consensus 75 l~~l~~~l~s-----~~~~~~~~a~~~l~~l~~~~~~~----~~~~~~~~g~v~~Lv~ll~~~~------~~~i~~~a~~ 139 (530)
++.+++.+.. .+.+.....+..+.+++...... ......+..++|.+.++..... ++.+...+..
T Consensus 40 ~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~ 119 (415)
T PF12460_consen 40 SIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSR 119 (415)
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHH
Confidence 3455554442 24566677778888777653222 2344445568888887764321 1355555666
Q ss_pred HHHHHhcCChhhHHHHHhCCChHHHHHhhC----------CCC--HHHHHHHHHHHHh-hhCCCchhhhhHhhcCChHHH
Q 009636 140 ALTNIASGTSEHTKVVIDHGAVPIFVKLLY----------SPS--DDVREQAVWALGN-IAGDSPRCRDLVLSQGGLVPL 206 (530)
Q Consensus 140 ~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~----------~~~--~~i~~~a~~~L~n-l~~~~~~~~~~i~~~~~i~~L 206 (530)
++..+...-+...+.-+ +..+..+.. ..+ .......+..+.. +++-++.+.-. .....+..+
T Consensus 120 l~~~iv~~l~~~~q~~~----~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~-~~~~ll~~l 194 (415)
T PF12460_consen 120 LINLIVRSLSPEKQQEI----LDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLP-DLEELLQSL 194 (415)
T ss_pred HHHHHHHhCCHHHHHHH----HHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCcc-CHHHHHHHH
Confidence 66666653332222211 222333221 011 0112222222222 22222222111 111256677
Q ss_pred HHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhh-cCC----ChhHHHHHHHHHHHhc-cCChHHHHH
Q 009636 207 LAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI-HSN----DDEVLTDACWALSYLS-DGTNDKIQA 280 (530)
Q Consensus 207 l~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll-~~~----d~~v~~~a~~~l~~l~-~~~~~~~~~ 280 (530)
+.+.....++..+..++.+++.+...-+... ....++..+...+ ... ......-..|...-+. .+++.. .
T Consensus 195 ~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~--~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~-~- 270 (415)
T PF12460_consen 195 LNLALSSEDEFSRLAALQLLASLVNKWPDDD--DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLA-T- 270 (415)
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHcCCCChh--hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchH-H-
Confidence 7777666678888888888888876632222 3344455444444 222 2334445556664444 333322 2
Q ss_pred HHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCch--------hhHHHhhc----CchHHHHHhhcCCCchhHHHHH
Q 009636 281 VIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM--------QTQCVIEY----QALPCLLNLLSGNYKKSIKKEA 348 (530)
Q Consensus 281 ~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~--------~~~~~~~~----~~l~~L~~lL~~~~~~~v~~~a 348 (530)
.++..|+.++.+ +.+...+.+.++-+....+. ....+... .++|.|+...+.. +...+...
T Consensus 271 ----~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~-~~~~k~~y 343 (415)
T PF12460_consen 271 ----ELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA-DDEIKSNY 343 (415)
T ss_pred ----HHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc-ChhhHHHH
Confidence 356778888877 55778888888888765232 22223333 3566666666666 55578888
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCC
Q 009636 349 CWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG 401 (530)
Q Consensus 349 ~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 401 (530)
..+|+.+..+-|..+-.---..++|.|++.|+.++.+++..++.+|..+....
T Consensus 344 L~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 344 LTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 89999999877655433323468999999999999999999999999999865
No 135
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.55 E-value=0.012 Score=52.67 Aligned_cols=256 Identities=18% Similarity=0.224 Sum_probs=156.2
Q ss_pred HHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhh
Q 009636 118 VPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL 196 (530)
Q Consensus 118 v~~Lv~ll~~~~-~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~ 196 (530)
+..+.+.|.... ...-++.|+..|.++... +.+..+.+...+.+..++...+++|+.....
T Consensus 5 i~~i~~~L~~~s~~l~~r~rALf~Lr~l~~~-----------~~i~~i~ka~~d~s~llkhe~ay~LgQ~~~~------- 66 (289)
T KOG0567|consen 5 IETIGNILVNKSQPLQNRFRALFNLRNLLGP-----------AAIKAITKAFIDDSALLKHELAYVLGQMQDE------- 66 (289)
T ss_pred HHHHHHHHcCccHHHHHHHHHHHhhhccCCh-----------HHHHHHHHhcccchhhhccchhhhhhhhccc-------
Confidence 444555555433 123455666666666552 1255555555555556666777777765322
Q ss_pred HhhcCChHHHHHhhcC-CCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh
Q 009636 197 VLSQGGLVPLLAQLNG-QPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN 275 (530)
Q Consensus 197 i~~~~~i~~Ll~ll~~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~ 275 (530)
..++.++..+.. +..+-++..|..+|..+. . ...++.+-+..+.+-..|.+.+..++..+-..+.
T Consensus 67 ----~Av~~l~~vl~desq~pmvRhEAaealga~~-~---------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~ 132 (289)
T KOG0567|consen 67 ----DAVPVLVEVLLDESQEPMVRHEAAEALGAIG-D---------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDI 132 (289)
T ss_pred ----hhhHHHHHHhcccccchHHHHHHHHHHHhhc-c---------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhc
Confidence 267888888753 346777788999998887 2 3456677777766667777777777766642211
Q ss_pred HHH----HHH--H------HhCcHHHHHHhhCC-CCch-hHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCc
Q 009636 276 DKI----QAV--I------EAGVFPRLAEFLMH-PSPS-VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYK 341 (530)
Q Consensus 276 ~~~----~~~--~------~~~~l~~L~~lL~~-~~~~-~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~ 341 (530)
-.. ... + ..+-+..+-..|.+ ..+. -+..|...|.|+.. + ..+..|..-+..+ +
T Consensus 133 ~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~--E---------eaI~al~~~l~~~-S 200 (289)
T KOG0567|consen 133 IDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT--E---------EAINALIDGLADD-S 200 (289)
T ss_pred cccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc--H---------HHHHHHHHhcccc-h
Confidence 000 000 0 00112222222222 2222 23445555555532 1 2345566677777 8
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC--chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHH
Q 009636 342 KSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLC 419 (530)
Q Consensus 342 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~ 419 (530)
.-.|.+++++++.+-+. -.+|.|.+.|... ++.||.+|+.||+.++.. .+++.|.
T Consensus 201 alfrhEvAfVfGQl~s~-----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e------------~~~~vL~ 257 (289)
T KOG0567|consen 201 ALFRHEVAFVFGQLQSP-----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIADE------------DCVEVLK 257 (289)
T ss_pred HHHHHHHHHHHhhccch-----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH------------HHHHHHH
Confidence 88999999999998543 2567777777554 789999999999999773 2577788
Q ss_pred hccCCCChHHHHHHHHHHHHH
Q 009636 420 DLLVCPDPRIVTVCLEGLENI 440 (530)
Q Consensus 420 ~lL~~~~~~~~~~al~~l~~l 440 (530)
.++..+++-+...|.-+|..+
T Consensus 258 e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 258 EYLGDEERVVRESCEVALDML 278 (289)
T ss_pred HHcCCcHHHHHHHHHHHHHHH
Confidence 888888888887777666643
No 136
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.50 E-value=0.016 Score=60.43 Aligned_cols=235 Identities=16% Similarity=0.097 Sum_probs=151.5
Q ss_pred hcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCCh
Q 009636 125 LLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGL 203 (530)
Q Consensus 125 l~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i 203 (530)
+.....|.+-..+.|++...+.........+- -++...+..+. +..+.++-.|+.+++-.|+-.. +.. ..-+++
T Consensus 458 l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~v-l~~--~~p~il 532 (1005)
T KOG2274|consen 458 LVYQESPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCKVKV-LLS--LQPMIL 532 (1005)
T ss_pred cccccCHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccCcee-ccc--cchHHH
Confidence 33333477777888988877764322222111 12333344443 3445567777777776662221 111 122356
Q ss_pred HHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhc--CCChhHHHHHHHHHHHhccCChHHHHHH
Q 009636 204 VPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH--SNDDEVLTDACWALSYLSDGTNDKIQAV 281 (530)
Q Consensus 204 ~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~--~~d~~v~~~a~~~l~~l~~~~~~~~~~~ 281 (530)
..|+.+. ...+.++....+.+|+..|..+|.........+.|.+..++. ++||.+...+-.++-.++.... +.. -
T Consensus 533 d~L~qla-s~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~-~~g-~ 609 (1005)
T KOG2274|consen 533 DGLLQLA-SKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAA-NYG-P 609 (1005)
T ss_pred HHHHHHc-ccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH-hhc-c
Confidence 6666666 666788899999999999999888888888888887776654 5678777666666666654221 111 1
Q ss_pred HHhCcHHHHHHhhCCCC----chhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009636 282 IEAGVFPRLAEFLMHPS----PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (530)
Q Consensus 282 ~~~~~l~~L~~lL~~~~----~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 357 (530)
.....+|.+++.|..+. .....-++..|.-+.++.+.-....+-.-++|.+.++.-+..+......+.-+|..+..
T Consensus 610 m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is 689 (1005)
T KOG2274|consen 610 MQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALIS 689 (1005)
T ss_pred hHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence 22367899999998876 45566677888878877665444445556778888777666477888888889988887
Q ss_pred CCHHHHHHHH
Q 009636 358 GNREQIQAVI 367 (530)
Q Consensus 358 ~~~~~~~~l~ 367 (530)
.+.++...--
T Consensus 690 ~~~eq~~t~~ 699 (1005)
T KOG2274|consen 690 VTLEQLLTWH 699 (1005)
T ss_pred cCHHHHHhhc
Confidence 6666654443
No 137
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.46 E-value=0.035 Score=55.94 Aligned_cols=230 Identities=16% Similarity=0.116 Sum_probs=144.1
Q ss_pred cCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC----CHHHHHHHHHHHHHHhcCChhhHHHHHhC
Q 009636 83 WSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED----YPQLQFEAAWALTNIASGTSEHTKVVIDH 158 (530)
Q Consensus 83 ~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~----~~~i~~~a~~~L~~l~~~~~~~~~~~~~~ 158 (530)
...++.+..+|+++|.|++-.+ ....+.+++.|..+.+++.|+... +.++.+-..++|.-++...+..+..+++.
T Consensus 42 ~~~~~~v~~EALKCL~N~lf~s-~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e 120 (446)
T PF10165_consen 42 ESPDPDVSREALKCLCNALFLS-PSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEE 120 (446)
T ss_pred cCCChHHHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence 3567889999999999999774 344556678999999999998761 37899999999999999888888887764
Q ss_pred -CChHHHHHhhCC-----------------CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc--------C
Q 009636 159 -GAVPIFVKLLYS-----------------PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN--------G 212 (530)
Q Consensus 159 -g~i~~L~~ll~~-----------------~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~--------~ 212 (530)
+++..+...|.. .+......++.++-|+..+.+.... -.....++.++.++. .
T Consensus 121 ~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~ 199 (446)
T PF10165_consen 121 HHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSS 199 (446)
T ss_pred hhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCC
Confidence 667766665521 1334566788899999866554322 012223444444332 2
Q ss_pred CCchhHHHHHHHHhhhhccCCC------------CCChhhhhchHHHHHHhhc----CC----ChhHHHHHHHHHHHhcc
Q 009636 213 QPKLSMLRNATWTLSNFCRGKP------------QPPFDQVSPALPALAHLIH----SN----DDEVLTDACWALSYLSD 272 (530)
Q Consensus 213 ~~~~~~~~~a~~~L~~L~~~~~------------~~~~~~~~~~l~~L~~ll~----~~----d~~v~~~a~~~l~~l~~ 272 (530)
.+.......++.+|.|+-.... ..........+..|+.+|. .. -.+.....+.+|..++.
T Consensus 200 ~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~ 279 (446)
T PF10165_consen 200 PPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLAR 279 (446)
T ss_pred CcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHH
Confidence 2345667777888887722110 0001112334445555544 22 13567778888888887
Q ss_pred CChHHHHHHHHh----------------CcHHHHHHhhCCCCchhHHHHHHHHhHhhc
Q 009636 273 GTNDKIQAVIEA----------------GVFPRLAEFLMHPSPSVLIPALRTVGNIVT 314 (530)
Q Consensus 273 ~~~~~~~~~~~~----------------~~l~~L~~lL~~~~~~~~~~al~~L~nl~~ 314 (530)
......+.+... .+-.+|+.++.+..+.++..+...+-.+|.
T Consensus 280 ~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~ 337 (446)
T PF10165_consen 280 AAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCK 337 (446)
T ss_pred hcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 765443333221 344566666666666666666666665554
No 138
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.45 E-value=0.051 Score=57.48 Aligned_cols=266 Identities=14% Similarity=0.120 Sum_probs=146.9
Q ss_pred hHHHHHHHHHHHHhhcCC-CCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHH
Q 009636 87 SGVQYECTTQFRKLLSIE-RSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFV 165 (530)
Q Consensus 87 ~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~ 165 (530)
+....-|++.+..+++.- +..+.+...+.=+++.+...++++- -.+|..|||+++.++..+-.. ...-..++....
T Consensus 432 ~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~-g~Lrarac~vl~~~~~~df~d--~~~l~~ale~t~ 508 (1010)
T KOG1991|consen 432 PRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPY-GYLRARACWVLSQFSSIDFKD--PNNLSEALELTH 508 (1010)
T ss_pred hhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCch-hHHHHHHHHHHHHHHhccCCC--hHHHHHHHHHHH
Confidence 333444555555444321 1233333333345666666777776 789999999999999532111 111123455666
Q ss_pred HhhC-CCCHHHHHHHHHHHHhhhCCCchhhhhHhh--cCChHHHHHhhcCCCchhHHHHHHH-HhhhhccCCCCCChhhh
Q 009636 166 KLLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLS--QGGLVPLLAQLNGQPKLSMLRNATW-TLSNFCRGKPQPPFDQV 241 (530)
Q Consensus 166 ~ll~-~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~--~~~i~~Ll~ll~~~~~~~~~~~a~~-~L~~L~~~~~~~~~~~~ 241 (530)
..|. +.+-.++-.|+.+|..+..+.+.....+.. -+.++.|+.+. +..+.+....++. .++.++..-.+......
T Consensus 509 ~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~-ne~End~Lt~vme~iV~~fseElsPfA~eL~ 587 (1010)
T KOG1991|consen 509 NCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLS-NEVENDDLTNVMEKIVCKFSEELSPFAVELC 587 (1010)
T ss_pred HHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHH-HhcchhHHHHHHHHHHHHHHHhhchhHHHHH
Confidence 6666 566678888999999888776543222221 12344555555 3333333333333 33334433333334445
Q ss_pred hchHHHHHHhhcC---CC---hhHHHHHHHHHH---Hhc---cCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHH
Q 009636 242 SPALPALAHLIHS---ND---DEVLTDACWALS---YLS---DGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV 309 (530)
Q Consensus 242 ~~~l~~L~~ll~~---~d---~~v~~~a~~~l~---~l~---~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L 309 (530)
..+.....+++.+ .+ .+-...|..+|. .+. +..++..+ -+..-+++.+-.+|++.-.++...++.++
T Consensus 588 q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~-~le~~~l~vi~~iL~~~i~dfyeE~~ei~ 666 (1010)
T KOG1991|consen 588 QNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLK-QLEPIVLPVIGFILKNDITDFYEELLEIV 666 (1010)
T ss_pred HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 6666667777764 11 222222323332 222 22222222 22334455555666777677888888888
Q ss_pred hHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCH
Q 009636 310 GNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNR 360 (530)
Q Consensus 310 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~ 360 (530)
..+.....+....+ -|+++.+.+.+... ....-....-+|.|+.. |.+
T Consensus 667 ~~~t~~~~~Isp~m--W~ll~li~e~~~~~-~~dyf~d~~~~l~N~vt~g~~ 715 (1010)
T KOG1991|consen 667 SSLTFLSKEISPIM--WGLLELILEVFQDD-GIDYFTDMMPALHNYVTYGTP 715 (1010)
T ss_pred hhhhhhhcccCHHH--HHHHHHHHHHHhhh-hHHHHHHHHHHHhhheeeCch
Confidence 77776555443333 36788888888877 67777788888998876 443
No 139
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.45 E-value=0.0015 Score=62.88 Aligned_cols=321 Identities=16% Similarity=0.135 Sum_probs=163.1
Q ss_pred CHHHHHHhhcC--CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC----
Q 009636 74 NLPVMVAGVWS--NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASG---- 147 (530)
Q Consensus 74 ~l~~l~~~l~s--~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~---- 147 (530)
........+.+ ....++.++++.|.-++... ....+....+...+...+.+.. |.++..++.++..+..+
T Consensus 254 ~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~---~~~~~~~~~l~RvI~~~~~~~~-p~~~l~~a~ll~~lg~~lv~~ 329 (728)
T KOG4535|consen 254 SGSDAGSAAGSTYEPSPMRLEALQVLTLLARYF---SMTQAYLMELGRVICKCMGEAD-PSIQLHGAKLLEELGTGLIQQ 329 (728)
T ss_pred chhhHHhhhcCccCCchhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHccCCCCC-hHHHHHHHHHHHHHHHHHhhh
Confidence 44455555554 23457778887777665431 1112222223344444555666 89999999988876642
Q ss_pred -ChhhHHHHHhCCChHHHH------H-hhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHH
Q 009636 148 -TSEHTKVVIDHGAVPIFV------K-LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSML 219 (530)
Q Consensus 148 -~~~~~~~~~~~g~i~~L~------~-ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~ 219 (530)
.++..+.-...|-+-.+. . .-.+..+..+...+.++.+|.......-.. -.....+.++.-..++.+.-+.
T Consensus 330 ~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn-~~~T~~~~Fl~GC~d~~~~lv~ 408 (728)
T KOG4535|consen 330 YKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPN-DRQTLCITFLLGCNDSKNRLVK 408 (728)
T ss_pred cCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCC-cchhhhHHHHhcccchHHHHHH
Confidence 122222211112111110 0 111223345556666666665322110000 0000111222222133344455
Q ss_pred HHHHHHhhhhccCCC-CCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC----Ch---HHHHHHHHhCcHHHHH
Q 009636 220 RNATWTLSNFCRGKP-QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG----TN---DKIQAVIEAGVFPRLA 291 (530)
Q Consensus 220 ~~a~~~L~~L~~~~~-~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~----~~---~~~~~~~~~~~l~~L~ 291 (530)
..|..++.-+.-+.. .........+...+...+.+..-..++.+.|++++++.. -+ .....+.. -.+..+.
T Consensus 409 ~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~~~ 487 (728)
T KOG4535|consen 409 AAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLKML 487 (728)
T ss_pred HHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHHHH
Confidence 666777766666642 223344556666666666666677889999999999743 11 11111111 1222222
Q ss_pred Hhh---CCCCchhHHHHHHHHhHhhcCCch---hhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 009636 292 EFL---MHPSPSVLIPALRTVGNIVTGDDM---QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQA 365 (530)
Q Consensus 292 ~lL---~~~~~~~~~~al~~L~nl~~~~~~---~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 365 (530)
..- .-.+.+++..+.++|+|+...-+. .....+..+.+..+....-.+....||.+||.+++|+..+..-..+.
T Consensus 488 ~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~ 567 (728)
T KOG4535|consen 488 RSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQT 567 (728)
T ss_pred HHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccC
Confidence 222 124678999999999999742210 00011111222222222222226789999999999998752110110
Q ss_pred -HHHhCcHHHHHHHHhc-CchhHHHHHHHHHHHhhcC
Q 009636 366 -VIEANIIGPLVALLEN-AEFDIKKEAAWAISNATSG 400 (530)
Q Consensus 366 -l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~nl~~~ 400 (530)
-+...+++.|+.++.+ .+++||..|+.+|.--...
T Consensus 568 ~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~r 604 (728)
T KOG4535|consen 568 APWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKR 604 (728)
T ss_pred CCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCc
Confidence 1122357778877754 4899999999999766553
No 140
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.43 E-value=0.019 Score=59.89 Aligned_cols=313 Identities=12% Similarity=0.060 Sum_probs=181.5
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHH
Q 009636 84 SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPI 163 (530)
Q Consensus 84 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~ 163 (530)
+..|.....|.+.+.++.+.. .....+. .-++...+..+..+..+.++..|+++++..++ ...... ...+++..
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~--~~~~~~~-~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~-~~p~ild~ 534 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSST--VINPQLL-QHFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLS-LQPMILDG 534 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhh--ccchhHH-HHHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceeccc-cchHHHHH
Confidence 566777778888888776542 1111111 11344455555554446788888888887774 222111 12366778
Q ss_pred HHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc-CCCchhHHHHHHHHhhhhccCCCCCChhhhh
Q 009636 164 FVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN-GQPKLSMLRNATWTLSNFCRGKPQPPFDQVS 242 (530)
Q Consensus 164 L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~-~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~ 242 (530)
|+++....+.++....+.+|+..+..+|++... .+..+.|.++.+.. .+.|+.+...+--++-.++... ...-.+..
T Consensus 535 L~qlas~~s~evl~llmE~Ls~vv~~dpef~as-~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~-~~~g~m~e 612 (1005)
T KOG2274|consen 535 LLQLASKSSDEVLVLLMEALSSVVKLDPEFAAS-MESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIA-ANYGPMQE 612 (1005)
T ss_pred HHHHcccccHHHHHHHHHHHHHHhccChhhhhh-hhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH-HhhcchHH
Confidence 888888788888888999999999888865443 34445555555543 5667777777777777776642 22223456
Q ss_pred chHHHHHHhhcCCC----hhHHHHHHHHHHHhccCCh-HHHHHHHHhCcHHHHHHhh-CCCCchhHHHHHHHHhHhhcCC
Q 009636 243 PALPALAHLIHSND----DEVLTDACWALSYLSDGTN-DKIQAVIEAGVFPRLAEFL-MHPSPSVLIPALRTVGNIVTGD 316 (530)
Q Consensus 243 ~~l~~L~~ll~~~d----~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~l~~L~~lL-~~~~~~~~~~al~~L~nl~~~~ 316 (530)
.++|.++..+..++ .....-++..|..+.++.+ ...+.++. -+++.+.++. .+++......+-.||..+....
T Consensus 613 ~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~-~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~ 691 (1005)
T KOG2274|consen 613 RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLIC-YAFPAVAKITLHSDDHETLQNATECLRALISVT 691 (1005)
T ss_pred HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHH-HHhHHhHhheeecCChHHHHhHHHHHHHHHhcC
Confidence 78999999998765 4455555666665554432 22333333 3456666654 4567778888889998888765
Q ss_pred chhhHHHh-hcC-----chHHHHHhhcCCCchhHHHHHHHHHHHHh----cCCHHHHHHHHHhCcHHHH-HHHHhcCchh
Q 009636 317 DMQTQCVI-EYQ-----ALPCLLNLLSGNYKKSIKKEACWTVSNIT----AGNREQIQAVIEANIIGPL-VALLENAEFD 385 (530)
Q Consensus 317 ~~~~~~~~-~~~-----~l~~L~~lL~~~~~~~v~~~a~~~L~nl~----~~~~~~~~~l~~~~~i~~L-~~ll~~~~~~ 385 (530)
.++...-- +.| ++..+..+|+ ++.-..++..+|.+. .+-+......++. ++..+ .++-......
T Consensus 692 ~eq~~t~~~e~g~~~~yImqV~sqLLd----p~~sds~a~~VG~lV~tLit~a~~el~~n~d~-IL~Avisrmq~ae~ls 766 (1005)
T KOG2274|consen 692 LEQLLTWHDEPGHNLWYIMQVLSQLLD----PETSDSAAAFVGPLVLTLITHASSELGPNLDQ-ILRAVISRLQQAETLS 766 (1005)
T ss_pred HHHHHhhccCCCccHHHHHHHHHHHcC----CccchhHHHHHhHHHHHHHHHHHHHhchhHHH-HHHHHHHHHHHhhhHH
Confidence 54432222 222 2333444443 333334444444433 3222222222221 23333 3334445678
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHH
Q 009636 386 IKKEAAWAISNATSGGTHEQIKFLV 410 (530)
Q Consensus 386 v~~~a~~aL~nl~~~~~~~~~~~l~ 410 (530)
+-...+.+++++..........+|.
T Consensus 767 viQsLi~VfahL~~t~~~~~l~FL~ 791 (1005)
T KOG2274|consen 767 VIQSLIMVFAHLVHTDLDQLLNFLS 791 (1005)
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 8888888999888764333333333
No 141
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.43 E-value=0.00088 Score=51.21 Aligned_cols=68 Identities=16% Similarity=0.341 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhC--CCCHHHHHHHHHHHHhhhCCCchhhhhHhhc
Q 009636 133 LQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY--SPSDDVREQAVWALGNIAGDSPRCRDLVLSQ 200 (530)
Q Consensus 133 i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~--~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~ 200 (530)
++...+++|+|++..++...+.+.+.|+++.++.... ..+|-+++.|+|++.||+.++++.+..+...
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 3567889999999999999999999999999999864 4789999999999999999999888776543
No 142
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.41 E-value=0.018 Score=59.13 Aligned_cols=261 Identities=15% Similarity=0.161 Sum_probs=141.8
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhh-
Q 009636 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD- 195 (530)
Q Consensus 117 ~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~- 195 (530)
..+.+-.++.+.. ..+..+|++++.++...++.... ..+..|--+++++...+|-.|.++|..+|.-.|..-.
T Consensus 246 ~~~fl~s~l~~K~-emV~~EaArai~~l~~~~~r~l~-----pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~ 319 (865)
T KOG1078|consen 246 LFPFLESCLRHKS-EMVIYEAARAIVSLPNTNSRELA-----PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTV 319 (865)
T ss_pred HHHHHHHHHhchh-HHHHHHHHHHHhhccccCHhhcc-----hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccc
Confidence 3455556666666 78999999999998875544332 2677888888889999999999999999976653211
Q ss_pred -------hHhhcC---ChHHHHHhhcCCC---chhHHHHHHHHhhhhccCCCCCChh-----------hhhchHHHHHHh
Q 009636 196 -------LVLSQG---GLVPLLAQLNGQP---KLSMLRNATWTLSNFCRGKPQPPFD-----------QVSPALPALAHL 251 (530)
Q Consensus 196 -------~i~~~~---~i~~Ll~ll~~~~---~~~~~~~a~~~L~~L~~~~~~~~~~-----------~~~~~l~~L~~l 251 (530)
.+-+.+ ....+..+|+... -..+......+.+.++.+....... .....+..|..+
T Consensus 320 cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~ 399 (865)
T KOG1078|consen 320 CNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNM 399 (865)
T ss_pred cchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 110000 1112222231111 1222333333334443332111000 112333444444
Q ss_pred hcCC-ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchH
Q 009636 252 IHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALP 330 (530)
Q Consensus 252 l~~~-d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~ 330 (530)
|..+ .-+...++..++..+....++... .++..|+.++.+.. ...-+.++|.-+....+.. ......+.
T Consensus 400 Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDce--~~~i~~rILhlLG~EgP~a---~~Pskyir 469 (865)
T KOG1078|consen 400 LREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDCE--FTQIAVRILHLLGKEGPKA---PNPSKYIR 469 (865)
T ss_pred HHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhcc--chHHHHHHHHHHhccCCCC---CCcchhhH
Confidence 4432 234444555555554443222211 23445555554433 2333444444444322211 01123344
Q ss_pred HHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009636 331 CLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS 399 (530)
Q Consensus 331 ~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 399 (530)
.+.....-. +..+|..|..+|.++..+++.- ...+.-.|.+++.+.|.++|..|..+|.++..
T Consensus 470 ~iyNRviLE-n~ivRaaAv~alaKfg~~~~~l-----~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 470 FIYNRVILE-NAIVRAAAVSALAKFGAQDVVL-----LPSILVLLKRCLNDSDDEVRDRATFYLKNLEE 532 (865)
T ss_pred HHhhhhhhh-hhhhHHHHHHHHHHHhcCCCCc-----cccHHHHHHHHhcCchHHHHHHHHHHHHHhhh
Confidence 444444445 7789999999999998654322 22355677788888899999999999998873
No 143
>PRK14707 hypothetical protein; Provisional
Probab=97.38 E-value=0.27 Score=56.42 Aligned_cols=402 Identities=16% Similarity=0.105 Sum_probs=221.8
Q ss_pred CHHHHHHhhcC--CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009636 74 NLPVMVAGVWS--NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151 (530)
Q Consensus 74 ~l~~l~~~l~s--~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~ 151 (530)
.+..+++.+.+ ++.+-+ .++..|...++.. ....+.+-..|+...|-.+-+-++++..+..+...-..++. .+..
T Consensus 164 ~~~lllNafSKw~~~~~c~-~aa~~la~~~~~~-d~~~~~~~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~-~~~l 240 (2710)
T PRK14707 164 NISLALNAFSKWSDNPDCQ-AVAPRFAALVASD-DRLRSAMDAQGVATVLNALCKWPDTPDCGNAVSALAERLAD-ESRL 240 (2710)
T ss_pred cHHHHHHHhhcCCCCchHH-HHHHHHHHHhcCC-hhhhcccchHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcC-cHHH
Confidence 34556665553 334344 4555555455443 23334444445444444555566656766655555455555 4544
Q ss_pred HHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHH-HhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhh-
Q 009636 152 TKVVIDHGAVPIFVKLLYS-PSDDVREQAVWAL-GNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN- 228 (530)
Q Consensus 152 ~~~~~~~g~i~~L~~ll~~-~~~~i~~~a~~~L-~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~- 228 (530)
+..+-..| +...+..|+. ++......++..| ..++ +.+..++.+-.. .+.-.++-|.+-.+..+.+.+...|..
T Consensus 241 ~~~~~~q~-va~~lN~lsKwp~~~~C~~a~~~lA~rl~-~~~~l~~al~~q-~vanalNalSKwpd~~vc~~Aa~~la~r 317 (2710)
T PRK14707 241 RNELKPQE-LGNALNALSKWADTPVCAAAASALAERLV-DDPGLRKALDPI-NVTQALNALSKWADLPVCAEAAIALAER 317 (2710)
T ss_pred HHhCChHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHh-hhHHHHHhcCHH-HHHHHHhhhhcCCCchHHHHHHHHHHHH
Confidence 44443333 5555666655 5554444454444 4554 444455544333 233445555566777776666655543
Q ss_pred hccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHH
Q 009636 229 FCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRT 308 (530)
Q Consensus 229 L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~ 308 (530)
|.....-.......++-..|..+-+-+|..+...+..+|..=...+++..+.+-..|+-..|-.+-+.++......+...
T Consensus 318 l~~d~~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~ 397 (2710)
T PRK14707 318 LADDPELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQGVSSVLNALSKWPDTPVCAAAASA 397 (2710)
T ss_pred HhccHhhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchhHHHHHHhhhhcCCCchHHHHHHHH
Confidence 44432222222223344445555555677777777766655444444444434333444444444455666666666666
Q ss_pred HhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHH
Q 009636 309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKK 388 (530)
Q Consensus 309 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~ 388 (530)
|..-..++.+....+-..|+-..|-.+-+-+ +..+...++..|.--..++.+..+.+--.++...|-.+-+-+|..+..
T Consensus 398 LA~~l~~d~~l~~~~~~Q~van~lnalsKWP-d~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~ 476 (2710)
T PRK14707 398 LAEHVVDDLELRKGLDPQGVSNALNALAKWP-DLPICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPDTPICG 476 (2710)
T ss_pred HHHHhccChhhhhhcchhhHHHHHHHhhcCC-cchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhHH
Confidence 6555555666655554555555555555666 777777777777776667667665555556666666666677888888
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHH-HHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhcc
Q 009636 389 EAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVC-LEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEG 467 (530)
Q Consensus 389 ~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~a-l~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~ 467 (530)
.++..|.-=... +++.++.|--.++...|-.+-+.++......+ .++-..+.. ... ....|...+.
T Consensus 477 ~aa~~La~~l~~-~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~-~~~-----------l~~~~~~~~~ 543 (2710)
T PRK14707 477 QTASALAARLAH-ERRLRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVVD-ELQ-----------LRKAFDAHQV 543 (2710)
T ss_pred HHHHHHHHHhcc-cHHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhcc-chh-----------hhhhhhhHHH
Confidence 888777766554 44566666666777777777777776533333 333333331 111 2334444444
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009636 468 LEKIESLQTHDNAEIYEKSVKLLETYWL 495 (530)
Q Consensus 468 ~~~l~~l~~~~~~~v~~~a~~il~~~~~ 495 (530)
...+.-+..+++.+....+..-|...+-
T Consensus 544 ~~~lnalSKwp~s~~C~~A~~~iA~~l~ 571 (2710)
T PRK14707 544 VNTLKALSKWPDKQLCAVAASGLAERLA 571 (2710)
T ss_pred HHHHHhhhcCCchhHHHHHHHHHHHHhh
Confidence 5566666777777777776666655443
No 144
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.38 E-value=0.008 Score=61.91 Aligned_cols=224 Identities=15% Similarity=0.125 Sum_probs=151.7
Q ss_pred hhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCC-hhHHHHHHHHHHHh
Q 009636 192 RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSND-DEVLTDACWALSYL 270 (530)
Q Consensus 192 ~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d-~~v~~~a~~~l~~l 270 (530)
..+...++-|+...|+.+. ....+........+|.. .-.........+++.+...+.... ..-....+.++.|+
T Consensus 495 ~~~~~~Ik~~~~~aLlrl~-~~q~e~akl~~~~aL~~----~i~f~~~~~~~v~~~~~s~~~~d~~~~en~E~L~altnL 569 (748)
T KOG4151|consen 495 YERAKKIKPGGYEALLRLG-QQQFEEAKLKWYHALAG----KIDFPGERSYEVVKPLDSALHNDEKGLENFEALEALTNL 569 (748)
T ss_pred HhcCccccccHHHHHHHHH-HHhchHHHHHHHHHHhh----hcCCCCCchhhhhhhhcchhhhhHHHHHHHHHHHHhhcc
Confidence 3456677888999999988 44555666666667661 111111222344555555544332 22234578889999
Q ss_pred ccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhh-cCchHHHHHhhcCCCchhHHHHHH
Q 009636 271 SDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIE-YQALPCLLNLLSGNYKKSIKKEAC 349 (530)
Q Consensus 271 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~~v~~~a~ 349 (530)
+..++...+.+++...++.+-.++..+++..+..++..+.||..+..-....+.+ ..-++.....+... ......+++
T Consensus 570 as~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~-~E~~~lA~a 648 (748)
T KOG4151|consen 570 ASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA-DEKFELAGA 648 (748)
T ss_pred cCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh-hhHHhhhcc
Confidence 8877766677888888888888888999999999999999999877766666666 34555555566555 677777777
Q ss_pred HHHHHHhcCCHHHHH-HHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcc
Q 009636 350 WTVSNITAGNREQIQ-AVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLL 422 (530)
Q Consensus 350 ~~L~nl~~~~~~~~~-~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL 422 (530)
.++..|+.-...++. ..--......+..++.+++..++...+..+.|+.. +..+....+.....+..+..+-
T Consensus 649 ~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~-~~~ei~~~~~~~~~~~~l~~~~ 721 (748)
T KOG4151|consen 649 GALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFE-ALFEIAEKIFETEVMELLSGLQ 721 (748)
T ss_pred ccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHH-HHHHHHHHhccchHHHHHHHHH
Confidence 777767665555544 23334577888889999999999999999999544 4455556655555555554433
No 145
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.37 E-value=0.0021 Score=66.85 Aligned_cols=189 Identities=17% Similarity=0.126 Sum_probs=134.1
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhh-------------hhHhhcCChHHHHHhhcCCCchhHHHHHHHHhh
Q 009636 161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR-------------DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS 227 (530)
Q Consensus 161 i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~-------------~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~ 227 (530)
...|+.+|+. +++-..+..++.-+..|++.++ +.+. ..++|.++..+ .......+.+-..+|+
T Consensus 817 a~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF-~~ivP~l~~~~-~t~~~~~K~~yl~~Ls 892 (1030)
T KOG1967|consen 817 AEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFF-CDIVPILVSKF-ETAPGSQKHNYLEALS 892 (1030)
T ss_pred HHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHH-HhhHHHHHHHh-ccCCccchhHHHHHHH
Confidence 3456666654 4555667777777777665432 2222 24678888888 4556677778888888
Q ss_pred hhccCCCCCCh-hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCC---chhHH
Q 009636 228 NFCRGKPQPPF-DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS---PSVLI 303 (530)
Q Consensus 228 ~L~~~~~~~~~-~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~---~~~~~ 303 (530)
++..+-|.... .....++|.|++.|.-+|..++..++.++.-+....+......++ -+++.++.+-.+.+ ..+|.
T Consensus 893 hVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~-Tlvp~lLsls~~~~n~~~~VR~ 971 (1030)
T KOG1967|consen 893 HVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLS-TLVPYLLSLSSDNDNNMMVVRE 971 (1030)
T ss_pred HHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHh-HHHHHHHhcCCCCCcchhHHHH
Confidence 88876554332 345778899999999999999999999998777555444333333 46777777766554 56899
Q ss_pred HHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHH
Q 009636 304 PALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI 355 (530)
Q Consensus 304 ~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl 355 (530)
.|+.+|..+.+.-+...-......++..|.+.|.+. ..-||++|..+=.+.
T Consensus 972 ~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk-KRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen 972 DALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK-KRLVRKEAVDTRQNW 1022 (1030)
T ss_pred HHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH-HHHHHHHHHHHhhhh
Confidence 999999999986665544455667889999999988 888999998765443
No 146
>PRK14707 hypothetical protein; Provisional
Probab=97.37 E-value=0.22 Score=57.14 Aligned_cols=356 Identities=18% Similarity=0.115 Sum_probs=205.0
Q ss_pred HHHHHHhh-cCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-C-CHHHHHHHHHHHHhhhCCCchhh
Q 009636 118 VPRFVEFL-LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-P-SDDVREQAVWALGNIAGDSPRCR 194 (530)
Q Consensus 118 v~~Lv~ll-~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~-~~~i~~~a~~~L~nl~~~~~~~~ 194 (530)
+-.+++-+ +.+++.+.+..+......++. .+..+..+ +...|..++..++. + ++..+. ++..|.....+....+
T Consensus 165 ~~lllNafSKw~~~~~c~~aa~~la~~~~~-~d~~~~~~-~~q~ia~~lNa~sKWp~~~~c~~-aa~~la~~l~~~~~l~ 241 (2710)
T PRK14707 165 ISLALNAFSKWSDNPDCQAVAPRFAALVAS-DDRLRSAM-DAQGVATVLNALCKWPDTPDCGN-AVSALAERLADESRLR 241 (2710)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhcC-Chhhhccc-chHHHHHHHHHHhcCCCChhHHH-HHHHHHHHHcCcHHHH
Confidence 33444433 334446777777766666766 34444444 34456667777766 4 444444 4455544433434455
Q ss_pred hhHhhcCChHHHHHhhcCCCchhHHHHHHHHh-hhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC
Q 009636 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTL-SNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG 273 (530)
Q Consensus 195 ~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L-~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~ 273 (530)
..+-.. .+-..++.|.+-++......+..++ ..+..+..-.....-..+-..|..+-+-.+..+...+...|..=...
T Consensus 242 ~~~~~q-~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~ 320 (2710)
T PRK14707 242 NELKPQ-ELGNALNALSKWADTPVCAAAASALAERLVDDPGLRKALDPINVTQALNALSKWADLPVCAEAAIALAERLAD 320 (2710)
T ss_pred HhCChH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhc
Confidence 444333 4555666665666665555555444 44554422211122233334444555567777777766666443333
Q ss_pred ChHHHHHHHHhCcHHHHHHhh-CCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHH
Q 009636 274 TNDKIQAVIEAGVFPRLAEFL-MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTV 352 (530)
Q Consensus 274 ~~~~~~~~~~~~~l~~L~~lL-~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L 352 (530)
+.+..+.+-. -.+...+..| +.++..+...|...|.--....+...+.+--.|+-..|-.+-+-+ +..+...|+..|
T Consensus 321 d~~l~~~~~~-~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~~a~~lNalsKWp-~~~~c~~aa~~L 398 (2710)
T PRK14707 321 DPELCKALNA-RGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQGVSSVLNALSKWP-DTPVCAAAASAL 398 (2710)
T ss_pred cHhhhhccch-HHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchhHHHHHHhhhhcCC-CchHHHHHHHHH
Confidence 4443332222 2334444444 445555555555554444443555544433344444444445556 666777777776
Q ss_pred HHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHH
Q 009636 353 SNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTV 432 (530)
Q Consensus 353 ~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~ 432 (530)
..=..++++....+-..|+-..|-.+-+-++..+...++.+|.--... +.+.++.|--.++...|-.+-+.+|..+...
T Consensus 399 A~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~-d~~l~~~~~p~~va~~LnalSKWPd~p~c~~ 477 (2710)
T PRK14707 399 AEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAH-DTELCKALDPINVTQALDALSKWPDTPICGQ 477 (2710)
T ss_pred HHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhc-cHHHHhhcChHHHHHHHHHhhcCCCChhHHH
Confidence 665567777776666667777777777778889999998888877665 5677777766677777777888999887766
Q ss_pred HHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHH
Q 009636 433 CLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLE 491 (530)
Q Consensus 433 al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~ 491 (530)
+.+.|.-=+..... .+.-|.-.+....|..|...++...+..|..-|-
T Consensus 478 aa~~La~~l~~~~~-----------l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA 525 (2710)
T PRK14707 478 TASALAARLAHERR-----------LRKALKPQEVVIALHSLSKWPDTPICAEAASALA 525 (2710)
T ss_pred HHHHHHHHhcccHH-----------HHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHH
Confidence 66666544443322 3555666667778888888888776655544443
No 147
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.36 E-value=0.00056 Score=43.09 Aligned_cols=39 Identities=38% Similarity=0.758 Sum_probs=35.5
Q ss_pred hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhh
Q 009636 149 SEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIA 187 (530)
Q Consensus 149 ~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~ 187 (530)
++.+..+++.|+++.|+.++.++++.++..++|+|.||+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 346778889999999999999989999999999999996
No 148
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.36 E-value=0.082 Score=57.14 Aligned_cols=233 Identities=11% Similarity=0.040 Sum_probs=143.5
Q ss_pred HHHHhhcCCCchhHHHHHHHHhhhhccCCCCC--ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHH
Q 009636 205 PLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP--PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI 282 (530)
Q Consensus 205 ~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~--~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~ 282 (530)
.+.....++.+..++..+...|..++..++.. .......+...|.+-+++.+...+...+.++..+....+.....++
T Consensus 657 ~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i 736 (1176)
T KOG1248|consen 657 TVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI 736 (1176)
T ss_pred HhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 34444445568899999999999999884222 2233455666777777788888888889998888765542222344
Q ss_pred HhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcC------chHHHHHhhcCCC---chhHHHHHHHHHH
Q 009636 283 EAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQ------ALPCLLNLLSGNY---KKSIKKEACWTVS 353 (530)
Q Consensus 283 ~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~------~l~~L~~lL~~~~---~~~v~~~a~~~L~ 353 (530)
..-+.+.++.+ +..+...+..|..+|-.|+. .+...+.| .+..++.++..+. ...+......++.
T Consensus 737 ~k~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~-----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~ 810 (1176)
T KOG1248|consen 737 PKLIPEVILSL-KEVNVKARRNAFALLVFIGA-----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAIT 810 (1176)
T ss_pred HHHHHHHHHhc-ccccHHHHhhHHHHHHHHHH-----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHH
Confidence 43444444444 77788888888877777763 11111111 3444444443221 2322222234444
Q ss_pred HHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHH
Q 009636 354 NITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVC 433 (530)
Q Consensus 354 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~a 433 (530)
.+..........-.-.+++..+.-.|.+..+++++.|+..+.-++..-+....... ...+++.+..+++.....++..+
T Consensus 811 ~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~-~~~LL~sll~ls~d~k~~~r~Kv 889 (1176)
T KOG1248|consen 811 HILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPH-LEELLPSLLALSHDHKIKVRKKV 889 (1176)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhh-HHHHHHHHHHHHHhhhHHHHHHH
Confidence 44332112111111234566677778888999999999999999987554443332 22467788888888788888888
Q ss_pred HHHHHHHHHhh
Q 009636 434 LEGLENILKVG 444 (530)
Q Consensus 434 l~~l~~ll~~~ 444 (530)
-..|..++...
T Consensus 890 r~LlekLirkf 900 (1176)
T KOG1248|consen 890 RLLLEKLIRKF 900 (1176)
T ss_pred HHHHHHHHHHh
Confidence 88888887655
No 149
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.35 E-value=0.00057 Score=43.04 Aligned_cols=39 Identities=49% Similarity=0.669 Sum_probs=35.1
Q ss_pred HHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009636 361 EQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS 399 (530)
Q Consensus 361 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 399 (530)
+....+++.|+++.|++++.+++++++..++|+|.|++.
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 466778899999999999998899999999999999863
No 150
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.32 E-value=0.039 Score=59.50 Aligned_cols=243 Identities=13% Similarity=0.102 Sum_probs=149.9
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHh--CCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCc-hhhhhH
Q 009636 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVID--HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP-RCRDLV 197 (530)
Q Consensus 121 Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~-~~~~~i 197 (530)
+.....+.++..+|..+.++|..++.. +.......+ ..+...|..-+++.....+...+.+|..|....+ +..+.+
T Consensus 658 v~~~~e~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i 736 (1176)
T KOG1248|consen 658 VDPEFENSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI 736 (1176)
T ss_pred hhHHhhccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 344444443489999999999999985 222222111 1233455555555566677777777777765444 222332
Q ss_pred hhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc--CC----CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 009636 198 LSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR--GK----PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLS 271 (530)
Q Consensus 198 ~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~--~~----~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~ 271 (530)
.. .++.++-.+ +..+...++++..+|..++. .. ..+....+...++.+...+-.+........+.++..+.
T Consensus 737 ~k--~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il 813 (1176)
T KOG1248|consen 737 PK--LIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHIL 813 (1176)
T ss_pred HH--HHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH
Confidence 22 344444444 67788899999999988882 11 12224445566666665544343333333355555554
Q ss_pred cCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHH
Q 009636 272 DGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWT 351 (530)
Q Consensus 272 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~ 351 (530)
.........-.-.++++.+..+|.++++.++..|+..+..++..-+...-......+++.+..+++.. ...+|..+-..
T Consensus 814 ~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~-k~~~r~Kvr~L 892 (1176)
T KOG1248|consen 814 QEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDH-KIKVRKKVRLL 892 (1176)
T ss_pred HHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhh-hHHHHHHHHHH
Confidence 33222222222336778888889999999999999999999987775543333445788888888877 78888888888
Q ss_pred HHHHhc-CCHHHHHHHHH
Q 009636 352 VSNITA-GNREQIQAVIE 368 (530)
Q Consensus 352 L~nl~~-~~~~~~~~l~~ 368 (530)
|-.++. ...+.+..++.
T Consensus 893 lekLirkfg~~eLe~~~p 910 (1176)
T KOG1248|consen 893 LEKLIRKFGAEELESFLP 910 (1176)
T ss_pred HHHHHHHhCHHHHHhhCH
Confidence 888876 34454544444
No 151
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.30 E-value=0.1 Score=56.38 Aligned_cols=143 Identities=14% Similarity=0.199 Sum_probs=109.7
Q ss_pred cHHHHHHhhCC----CCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH
Q 009636 286 VFPRLAEFLMH----PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE 361 (530)
Q Consensus 286 ~l~~L~~lL~~----~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~ 361 (530)
+.|.+++..+. ++|.++..|.-+|+.+..-+..... .-+|.|+.++....++.+|.++..+++.++...|.
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 44555555533 5688999999999999876655442 45788999998554999999999999999876554
Q ss_pred HHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHH
Q 009636 362 QIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENIL 441 (530)
Q Consensus 362 ~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll 441 (530)
.+. ..-+.|...+.+.++.||+.|..+|.+++..+ .+.-.|.+..+..++.++++.+...|=..+.-+.
T Consensus 995 lie-----~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd------miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 995 LIE-----PWTEHLYRRLRDESPSVRKTALLVLSHLILND------MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred ccc-----hhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh------hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 333 24567888899999999999999999999853 2234699999999999999999987776655555
Q ss_pred Hhh
Q 009636 442 KVG 444 (530)
Q Consensus 442 ~~~ 444 (530)
..+
T Consensus 1064 ~k~ 1066 (1251)
T KOG0414|consen 1064 SKG 1066 (1251)
T ss_pred hcc
Confidence 444
No 152
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.25 E-value=0.018 Score=47.94 Aligned_cols=130 Identities=13% Similarity=0.109 Sum_probs=103.3
Q ss_pred HHHHHhCcHHHHHHhhCCCC------chhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCC-chhHHHHHHHH
Q 009636 279 QAVIEAGVFPRLAEFLMHPS------PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKSIKKEACWT 351 (530)
Q Consensus 279 ~~~~~~~~l~~L~~lL~~~~------~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~ 351 (530)
..++..+++..|++++.++. ..+...++.++..+.... ......+...++..+..+..... +..+...|...
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg-~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHG-IVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcC-cCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence 45778899999999998865 366777888888887643 33345667778888988888664 67899999999
Q ss_pred HHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHH
Q 009636 352 VSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFL 409 (530)
Q Consensus 352 L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l 409 (530)
|-+++..++.....+.+.=-++.|+..|+..+.+++..|...+..+...+++..++.+
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i 141 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEI 141 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 9999998777666666655699999999999999999999999999888776655543
No 153
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.22 E-value=0.017 Score=50.26 Aligned_cols=93 Identities=23% Similarity=0.241 Sum_probs=74.5
Q ss_pred ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHh
Q 009636 256 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNL 335 (530)
Q Consensus 256 d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~l 335 (530)
++.++.+++.+++.++...+.... ..++.+...|.++++.+|..|+.+|..|.....-. .+..++..++.+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik----~k~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK----VKGQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee----ehhhhhHHHHHH
Confidence 567899999999999876654433 56789999999999999999999999998643211 123344778888
Q ss_pred hcCCCchhHHHHHHHHHHHHhcC
Q 009636 336 LSGNYKKSIKKEACWTVSNITAG 358 (530)
Q Consensus 336 L~~~~~~~v~~~a~~~L~nl~~~ 358 (530)
+.++ ++.|+..|..++..+...
T Consensus 72 l~D~-~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 72 LVDE-NPEIRSLARSFFSELLKK 93 (178)
T ss_pred HcCC-CHHHHHHHHHHHHHHHHh
Confidence 8888 999999999999999764
No 154
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.21 E-value=0.068 Score=54.25 Aligned_cols=294 Identities=13% Similarity=0.098 Sum_probs=146.7
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhh
Q 009636 120 RFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLS 199 (530)
Q Consensus 120 ~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~ 199 (530)
.++...+ ++ +..+..|+..+.......|+.... ++..++.++.+.+..||.+|+..|..+|.+.++....
T Consensus 27 ~il~~~k-g~-~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k--- 96 (556)
T PF05918_consen 27 EILDGVK-GS-PKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK--- 96 (556)
T ss_dssp HHHHGGG-S--HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH---
T ss_pred HHHHHcc-CC-HHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH---
Confidence 3444444 34 788999999999999877877664 4678999999999999999999999999988765444
Q ss_pred cCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhc---CCChhHHHHHHHHHHH-hccCCh
Q 009636 200 QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH---SNDDEVLTDACWALSY-LSDGTN 275 (530)
Q Consensus 200 ~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~---~~d~~v~~~a~~~l~~-l~~~~~ 275 (530)
+...|+++| ...+..-...+-++|..|...++ .+.+..+...+. +.|+.+++.++..|.. +..-..
T Consensus 97 --vaDvL~QlL-~tdd~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~ 166 (556)
T PF05918_consen 97 --VADVLVQLL-QTDDPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKP 166 (556)
T ss_dssp --HHHHHHHHT-T---HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-T
T ss_pred --HHHHHHHHH-hcccHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcH
Confidence 566788888 66666666677777777665543 344555555554 5678889888877643 221111
Q ss_pred HHHH--HHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcC----CchhhHHHhhcCchHHHHHhh------cCCCchh
Q 009636 276 DKIQ--AVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG----DDMQTQCVIEYQALPCLLNLL------SGNYKKS 343 (530)
Q Consensus 276 ~~~~--~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~----~~~~~~~~~~~~~l~~L~~lL------~~~~~~~ 343 (530)
+... .-.+.-++..+-++|.+-...-......+|..+-.. .....+.+ ++.+.... ... +++
T Consensus 167 ~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeL-----v~ii~eQa~Ld~~f~~s-D~e 240 (556)
T PF05918_consen 167 ELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQEL-----VDIIEEQADLDQPFDPS-DPE 240 (556)
T ss_dssp TTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHH-----HHHHHHHHTTTS---SS-SHH
T ss_pred HHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHH-----HHHHHHHhccCCCCCCc-CHH
Confidence 1111 112223445566666654433344444555554431 12222222 23333222 112 333
Q ss_pred HHHHHHHHHHH----Hhc--CCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHH
Q 009636 344 IKKEACWTVSN----ITA--GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKP 417 (530)
Q Consensus 344 v~~~a~~~L~n----l~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~ 417 (530)
.......++.. +.. .+.....++.+ .++|.+-.+ +...+...+.++..++..+.......++ .-+...
T Consensus 241 ~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~-kvlP~l~~l----~e~~kl~lLk~lAE~s~~~~~~d~~~~L-~~i~~~ 314 (556)
T PF05918_consen 241 SIDRLISCLRQALPFFSRGVSSSKFVNYMCE-KVLPKLSDL----PEDRKLDLLKLLAELSPFCGAQDARQLL-PSIFQL 314 (556)
T ss_dssp HHHHHHHHHHHHGGG-BTTB--HHHHHHHHH-HTCCCTT---------HHHHHHHHHHHHHTT----THHHHH-HHHHHH
T ss_pred HHHHHHHHHHHhhHHhcCCCChHHHHHHHHH-HhcCChhhC----ChHHHHHHHHHHHHHcCCCCcccHHHHH-HHHHHH
Confidence 32222222222 122 23333333333 466655554 4577888889999888866433233322 112333
Q ss_pred HHhccCC--CChH----HHHHHHHHHHHHHHhhh
Q 009636 418 LCDLLVC--PDPR----IVTVCLEGLENILKVGE 445 (530)
Q Consensus 418 L~~lL~~--~~~~----~~~~al~~l~~ll~~~~ 445 (530)
|..++-. ..++ .++..+.++..|....+
T Consensus 315 L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k~p 348 (556)
T PF05918_consen 315 LKKYMPSKKTEPKLQFSYVECLLYAFHQLARKSP 348 (556)
T ss_dssp HHTTS----------HHHHHHHHHHHHHHHTT-T
T ss_pred HHHhCCCCCCCCcccchHhhHHHHHHHHHhhhCc
Confidence 3333322 2333 55566666666665544
No 155
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.19 E-value=0.017 Score=50.25 Aligned_cols=92 Identities=17% Similarity=0.175 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcC-ChHHHHHh
Q 009636 131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQG-GLVPLLAQ 209 (530)
Q Consensus 131 ~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~-~i~~Ll~l 209 (530)
|.+|..++.+++.++...+...+ ..++.+...|.++++.+|.+|+.+|..|...+. +.-.| .+..++.+
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~-----ik~k~~l~~~~l~~ 71 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM-----IKVKGQLFSRILKL 71 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc-----eeehhhhhHHHHHH
Confidence 78999999999999986555443 347899999999999999999999999975432 12223 33677788
Q ss_pred hcCCCchhHHHHHHHHhhhhccCC
Q 009636 210 LNGQPKLSMLRNATWTLSNFCRGK 233 (530)
Q Consensus 210 l~~~~~~~~~~~a~~~L~~L~~~~ 233 (530)
+ .+++++++..|..++..+....
T Consensus 72 l-~D~~~~Ir~~A~~~~~e~~~~~ 94 (178)
T PF12717_consen 72 L-VDENPEIRSLARSFFSELLKKR 94 (178)
T ss_pred H-cCCCHHHHHHHHHHHHHHHHhc
Confidence 8 8889999999999999998873
No 156
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.19 E-value=0.0034 Score=48.06 Aligned_cols=93 Identities=15% Similarity=0.193 Sum_probs=66.9
Q ss_pred HHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhc
Q 009636 302 LIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLEN 381 (530)
Q Consensus 302 ~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~ 381 (530)
+..++.+|+.++.+-.......+ ..+++.++..+.++ +..||..||.+|.|++......+-..+ ..+++.|.+++.+
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l-~~Il~pVL~~~~D~-d~rVRy~AcEaL~ni~k~~~~~~l~~f-~~IF~~L~kl~~D 79 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYL-DEILPPVLKCFDDQ-DSRVRYYACEALYNISKVARGEILPYF-NEIFDALCKLSAD 79 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHH-HHHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcC
Confidence 45567777777665554433332 36889999999999 999999999999999874333322222 3588999999999
Q ss_pred CchhHHHHHHHHHHHhh
Q 009636 382 AEFDIKKEAAWAISNAT 398 (530)
Q Consensus 382 ~~~~v~~~a~~aL~nl~ 398 (530)
.++.||..| ..|-++.
T Consensus 80 ~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 80 PDENVRSAA-ELLDRLL 95 (97)
T ss_pred CchhHHHHH-HHHHHHh
Confidence 999998876 5555543
No 157
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.17 E-value=0.067 Score=51.27 Aligned_cols=202 Identities=11% Similarity=0.085 Sum_probs=146.6
Q ss_pred HHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchh-----hHHHhh--cCchHHHHHhhcCCCchhHHHHHHHH
Q 009636 279 QAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ-----TQCVIE--YQALPCLLNLLSGNYKKSIKKEACWT 351 (530)
Q Consensus 279 ~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~-----~~~~~~--~~~l~~L~~lL~~~~~~~v~~~a~~~ 351 (530)
+.+...+++..|+..|..-+.+.+..+..+++++....... .+.+.. ..++..|+.-.. .+++--.+...
T Consensus 70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~---~~dial~~g~m 146 (335)
T PF08569_consen 70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE---NPDIALNCGDM 146 (335)
T ss_dssp HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG---STTTHHHHHHH
T ss_pred HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc---CccccchHHHH
Confidence 44667799999999999999999999999999998765433 223332 234444444444 44555666666
Q ss_pred HHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHc---CChHHHHhccCCCChH
Q 009636 352 VSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQ---GCIKPLCDLLVCPDPR 428 (530)
Q Consensus 352 L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~---~~i~~L~~lL~~~~~~ 428 (530)
|..++.. +.....++....+..+.+.+..++.++...|..++..+... .+.....++.. .+...+..+|.+++.-
T Consensus 147 lRec~k~-e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~-hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYv 224 (335)
T PF08569_consen 147 LRECIKH-ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTR-HKKLVAEFLSNNYDRFFQKYNKLLESSNYV 224 (335)
T ss_dssp HHHHTTS-HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHS-SHHHHHHHHHHTHHHHHHHHHHHCT-SSHH
T ss_pred HHHHHhh-HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHccCCCeE
Confidence 6666554 56677888888999999999999999999999999998776 34444444443 3467888999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009636 429 IVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETY 493 (530)
Q Consensus 429 ~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~ 493 (530)
++..++..|+.++....+..- ....+.+..-+..+..|..+++..|+-.|..+..=|
T Consensus 225 tkrqslkLL~ellldr~n~~v--------m~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvF 281 (335)
T PF08569_consen 225 TKRQSLKLLGELLLDRSNFNV--------MTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVF 281 (335)
T ss_dssp HHHHHHHHHHHHHHSGGGHHH--------HHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHH
T ss_pred eehhhHHHHHHHHHchhHHHH--------HHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHH
Confidence 999999999999977655332 356677777788888999999999999998888744
No 158
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.10 E-value=0.026 Score=53.70 Aligned_cols=192 Identities=20% Similarity=0.227 Sum_probs=124.1
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHH--HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC--Ch
Q 009636 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVI--RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASG--TS 149 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~--~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~--~~ 149 (530)
.+...+..+.......|..++..+.+++... ...+.+. ...++..+.+.++.+. ..-+..|+++++-++-. ..
T Consensus 44 ~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~--~~~d~v~~~~~tL~~~~~k~lkkg~-~~E~~lA~~~l~Ll~ltlg~g 120 (309)
T PF05004_consen 44 KLKEAIDLLTEKSSSTREAALEALIRALSSR--YLPDFVEDRRETLLDALLKSLKKGK-SEEQALAARALALLALTLGAG 120 (309)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHhhhcCCC
Confidence 3677888888888999999999999998763 2233332 2456788888888887 56667777777766552 22
Q ss_pred hhHHHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHhhh---CCCchhhhhHhhcCChHHHH--Hhhc---------CC
Q 009636 150 EHTKVVIDHGAVPIFVKLLYSP--SDDVREQAVWALGNIA---GDSPRCRDLVLSQGGLVPLL--AQLN---------GQ 213 (530)
Q Consensus 150 ~~~~~~~~~g~i~~L~~ll~~~--~~~i~~~a~~~L~nl~---~~~~~~~~~i~~~~~i~~Ll--~ll~---------~~ 213 (530)
.....+++ .+.|.|.+.+... .+.++..|+.+|+-++ +..+......++ .+..+. .... ..
T Consensus 121 ~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~ 197 (309)
T PF05004_consen 121 EDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAE 197 (309)
T ss_pred ccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCC
Confidence 33444443 4578888888763 4567777777777665 232222111111 222111 1111 12
Q ss_pred CchhHHHHHHHHhhhhccCCCCCCh-hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 009636 214 PKLSMLRNATWTLSNFCRGKPQPPF-DQVSPALPALAHLIHSNDDEVLTDACWALSYLS 271 (530)
Q Consensus 214 ~~~~~~~~a~~~L~~L~~~~~~~~~-~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~ 271 (530)
++..+...|+.+++-|...-+.... ......+|.|..+|.++|.+|+..|..+|.-+.
T Consensus 198 ~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 198 DDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred CccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 2456888888888777766543222 345778999999999999999999988887764
No 159
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.021 Score=56.43 Aligned_cols=155 Identities=17% Similarity=0.195 Sum_probs=105.8
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHh-hCCCCchhHHHHHHHHhHhhcCCchhhHHHhh
Q 009636 247 ALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEF-LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIE 325 (530)
Q Consensus 247 ~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~l-L~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~ 325 (530)
.+.+++.+.|+-.+.....+++.--.+.. ..|++..++.. +++.+.++++.|+-+||-+|..+.
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~-------- 584 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR-------- 584 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCc--------
Confidence 45566667777777665555433211111 12667777777 777899999999999998886443
Q ss_pred cCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHH
Q 009636 326 YQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQ 405 (530)
Q Consensus 326 ~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~ 405 (530)
..++..+++|..++++.||...+.+|+-.|+++..+. .+..|-.++.+...-||+.|+.+++-+...++++.
T Consensus 585 -~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~-------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~L 656 (926)
T COG5116 585 -DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV-------ATDILEALMYDTNDFVRQSAMIAVGMILMQCNPEL 656 (926)
T ss_pred -chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH-------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCccc
Confidence 4466677788777699999999999999998754432 34556666777788899999999999988776543
Q ss_pred HHHHHHcCChHHHHhccCCCC
Q 009636 406 IKFLVIQGCIKPLCDLLVCPD 426 (530)
Q Consensus 406 ~~~l~~~~~i~~L~~lL~~~~ 426 (530)
.... .++++.+.+++...+
T Consensus 657 np~v--~~I~k~f~~vI~~Kh 675 (926)
T COG5116 657 NPNV--KRIIKKFNRVIVDKH 675 (926)
T ss_pred ChhH--HHHHHHHHHHHhhhh
Confidence 2221 234555555554443
No 160
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.06 E-value=0.027 Score=53.86 Aligned_cols=202 Identities=14% Similarity=0.132 Sum_probs=138.6
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhh-----hhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhh
Q 009636 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR-----DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228 (530)
Q Consensus 154 ~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~-----~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~ 228 (530)
.+...+.+..|+..|..-+-+.+..+..+++++.......+ +.+... .-..+..++....++++.-.+...|..
T Consensus 71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~-~peil~~L~~gy~~~dial~~g~mlRe 149 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERH-RPEILDILLRGYENPDIALNCGDMLRE 149 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhC-CHHHHHHHHHHhcCccccchHHHHHHH
Confidence 45556888899999988888999999999999986554332 233222 122222333334466777777777777
Q ss_pred hccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHh---CcHHHHHHhhCCCCchhHHHH
Q 009636 229 FCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVFPRLAEFLMHPSPSVLIPA 305 (530)
Q Consensus 229 L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~l~~L~~lL~~~~~~~~~~a 305 (530)
.++.............+-.+...+..++=++..+|..++..+...........+.. .++.....+|.+++.-++..+
T Consensus 150 c~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqs 229 (335)
T PF08569_consen 150 CIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQS 229 (335)
T ss_dssp HTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHH
T ss_pred HHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhh
Confidence 77664333333445556667777888888999999999998776666555555544 467788889999999999999
Q ss_pred HHHHhHhhcCCchh---hHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009636 306 LRTVGNIVTGDDMQ---TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (530)
Q Consensus 306 l~~L~nl~~~~~~~---~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 357 (530)
+..||.+....... ...+-+..-+..++.+|++. +..++.+|..+.--+.+
T Consensus 230 lkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~-sk~Iq~eAFhvFKvFVA 283 (335)
T PF08569_consen 230 LKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK-SKNIQFEAFHVFKVFVA 283 (335)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc-chhhhHHHHHHHHHHHh
Confidence 99999998643322 23333556789999999998 99999999998888777
No 161
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=97.01 E-value=0.0021 Score=50.53 Aligned_cols=70 Identities=17% Similarity=0.291 Sum_probs=59.4
Q ss_pred ChHHHHhcc-CCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHH
Q 009636 414 CIKPLCDLL-VCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLET 492 (530)
Q Consensus 414 ~i~~L~~lL-~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~ 492 (530)
++..|+.+| .+.|+.++..|+.-|+.+++..+. .+..+++.|+.+.+.+|++|+|++|+..|...+++
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~-----------gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQk 112 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPN-----------GRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQK 112 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GG-----------GHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChh-----------HHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 478888988 456888889999999999998866 37778999999999999999999999999999988
Q ss_pred hC
Q 009636 493 YW 494 (530)
Q Consensus 493 ~~ 494 (530)
+.
T Consensus 113 lm 114 (119)
T PF11698_consen 113 LM 114 (119)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 162
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.00 E-value=0.1 Score=53.64 Aligned_cols=326 Identities=13% Similarity=0.095 Sum_probs=167.5
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 009636 76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV 155 (530)
Q Consensus 76 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~ 155 (530)
..+-+-|+++++-++-..++.++++= .+.. + ...+|.+...|.+.+ +-+|..|..++..|-.... .+
T Consensus 102 na~RkDLQHPNEyiRG~TLRFLckLk----E~EL---l-epl~p~IracleHrh-sYVRrNAilaifsIyk~~~----~L 168 (948)
T KOG1058|consen 102 NAYRKDLQHPNEYIRGSTLRFLCKLK----EPEL---L-EPLMPSIRACLEHRH-SYVRRNAILAIFSIYKNFE----HL 168 (948)
T ss_pred HHHhhhccCchHhhcchhhhhhhhcC----cHHH---h-hhhHHHHHHHHhCcc-hhhhhhhheeehhHHhhhh----hh
Confidence 55566778888888888888888762 1211 1 246899999999988 8999999998888876311 11
Q ss_pred HhCCChHHHHHhh-CCCCHHHHHHHHHHHHhh----------------------------------hCCCchhhhhHhhc
Q 009636 156 IDHGAVPIFVKLL-YSPSDDVREQAVWALGNI----------------------------------AGDSPRCRDLVLSQ 200 (530)
Q Consensus 156 ~~~g~i~~L~~ll-~~~~~~i~~~a~~~L~nl----------------------------------~~~~~~~~~~i~~~ 200 (530)
+. .+-..+-.+| ...++..++.|...|... |...|.. +.
T Consensus 169 ~p-DapeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~-----~~ 242 (948)
T KOG1058|consen 169 IP-DAPELIESFLLTEQDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAE-----KA 242 (948)
T ss_pred cC-ChHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHH-----hh
Confidence 10 1111122222 223444444444333221 1111110 11
Q ss_pred CChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcC-CChhHHHHHHHHHHHhccCChHHHH
Q 009636 201 GGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQ 279 (530)
Q Consensus 201 ~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~-~d~~v~~~a~~~l~~l~~~~~~~~~ 279 (530)
..+..+..+| .+.+..+.-.|..+|.+++..+ .........++.++.. +|..+.--.+.-|..+......
T Consensus 243 ~~i~~i~~lL-~stssaV~fEaa~tlv~lS~~p-----~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~--- 313 (948)
T KOG1058|consen 243 RYIRCIYNLL-SSTSSAVIFEAAGTLVTLSNDP-----TALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEK--- 313 (948)
T ss_pred HHHHHHHHHH-hcCCchhhhhhcceEEEccCCH-----HHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHH---
Confidence 1333444444 3334444444444444444331 1111222223333221 1222211111222222211111
Q ss_pred HHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCc-hhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC
Q 009636 280 AVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD-MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG 358 (530)
Q Consensus 280 ~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~ 358 (530)
+. .|.+-.++.+|++++-+++..++.+.-.|++... ...-.++...+...--. .+.+....|..-..++..++..
T Consensus 314 -il-~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~--e~d~~~~yRqlLiktih~cav~ 389 (948)
T KOG1058|consen 314 -IL-QGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNE--ESDDNGKYRQLLIKTIHACAVK 389 (948)
T ss_pred -HH-HHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcccc--ccccchHHHHHHHHHHHHHhhc
Confidence 11 1555667788888999999999988888876433 11111111111100000 1111345677777888888776
Q ss_pred CHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccC-CCChHHHHHHHHHH
Q 009636 359 NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV-CPDPRIVTVCLEGL 437 (530)
Q Consensus 359 ~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~-~~~~~~~~~al~~l 437 (530)
.++.. +.+++.|++.+.+.++......+..+...... .+..+. ..+..|+.-+. -...++-..++|++
T Consensus 390 Fp~~a-----atvV~~ll~fisD~N~~aas~vl~FvrE~iek-~p~Lr~-----~ii~~l~~~~~~irS~ki~rgalwi~ 458 (948)
T KOG1058|consen 390 FPEVA-----ATVVSLLLDFISDSNEAAASDVLMFVREAIEK-FPNLRA-----SIIEKLLETFPQIRSSKICRGALWIL 458 (948)
T ss_pred ChHHH-----HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHh-CchHHH-----HHHHHHHHhhhhhcccccchhHHHHH
Confidence 66543 45788999999988877666666666665553 222222 23444444443 35667777888888
Q ss_pred HHHHHhh
Q 009636 438 ENILKVG 444 (530)
Q Consensus 438 ~~ll~~~ 444 (530)
+..+...
T Consensus 459 GeYce~~ 465 (948)
T KOG1058|consen 459 GEYCEGL 465 (948)
T ss_pred HHHHhhh
Confidence 7766544
No 163
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.99 E-value=0.0054 Score=46.94 Aligned_cols=67 Identities=18% Similarity=0.240 Sum_probs=56.7
Q ss_pred hHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCC-CchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 009636 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-YKKSIKKEACWTVSNITAGNREQIQAVI 367 (530)
Q Consensus 301 ~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 367 (530)
++...+++++|++..+......+.+.|.++.++.....+ .+|-+|+.|.|++.|++.++++....+.
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~ 69 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIA 69 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 456789999999999998888999999999998887543 2789999999999999999888765544
No 164
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.91 E-value=0.38 Score=49.88 Aligned_cols=286 Identities=15% Similarity=0.144 Sum_probs=160.1
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChh
Q 009636 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFD 239 (530)
Q Consensus 160 ~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~ 239 (530)
..+.+-..+++....+...++.++.++....+ |...- .+..|--++ +++...++-.|..+|..++...|.....
T Consensus 246 ~~~fl~s~l~~K~emV~~EaArai~~l~~~~~--r~l~p---avs~Lq~fl-ssp~~~lRfaAvRtLnkvAm~~P~~v~~ 319 (865)
T KOG1078|consen 246 LFPFLESCLRHKSEMVIYEAARAIVSLPNTNS--RELAP---AVSVLQLFL-SSPKVALRFAAVRTLNKVAMKHPQAVTV 319 (865)
T ss_pred HHHHHHHHHhchhHHHHHHHHHHHhhccccCH--hhcch---HHHHHHHHh-cCcHHHHHHHHHHHHHHHHHhCCccccc
Confidence 34555556666677777788888887764443 11111 343343344 7778888888888888888776543322
Q ss_pred hhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchh
Q 009636 240 QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ 319 (530)
Q Consensus 240 ~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~ 319 (530)
+-.-|-.++...+-.+...+..++.. .+.+..+..+.+ -+...+.=++++..-+...|+++|++... .
T Consensus 320 ----cN~elE~lItd~NrsIat~AITtLLK--TG~e~sv~rLm~--qI~~fv~disDeFKivvvdai~sLc~~fp---~- 387 (865)
T KOG1078|consen 320 ----CNLDLESLITDSNRSIATLAITTLLK--TGTESSVDRLMK--QISSFVSDISDEFKIVVVDAIRSLCLKFP---R- 387 (865)
T ss_pred ----cchhHHhhhcccccchhHHHHHHHHH--hcchhHHHHHHH--HHHHHHHhccccceEEeHHHHHHHHhhcc---H-
Confidence 12223444444455555554444432 223333332322 23333333444444455556666555432 1
Q ss_pred hHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009636 320 TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS 399 (530)
Q Consensus 320 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 399 (530)
...+.+..|..+|..+..-+.++....++..+...+++... ..+..|+..+.+- +...-+...|.-+..
T Consensus 388 ----k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDc--e~~~i~~rILhlLG~ 456 (865)
T KOG1078|consen 388 ----KHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDC--EFTQIAVRILHLLGK 456 (865)
T ss_pred ----HHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhc--cchHHHHHHHHHHhc
Confidence 12345667777776654667788888888877775554432 2455677766543 344445555555544
Q ss_pred CCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCC
Q 009636 400 GGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDN 479 (530)
Q Consensus 400 ~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~ 479 (530)
.+.. .......+..+.+.+--.+..++..++.++.++....+.. . ......+..++++.+
T Consensus 457 EgP~----a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l-----------~-----~sI~vllkRc~~D~D 516 (865)
T KOG1078|consen 457 EGPK----APNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVL-----------L-----PSILVLLKRCLNDSD 516 (865)
T ss_pred cCCC----CCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCc-----------c-----ccHHHHHHHHhcCch
Confidence 3310 0011223445555555667778888888888887322221 1 223456778888999
Q ss_pred HHHHHHHHHHHHHhC
Q 009636 480 AEIYEKSVKLLETYW 494 (530)
Q Consensus 480 ~~v~~~a~~il~~~~ 494 (530)
.+|+++|...+...-
T Consensus 517 devRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 517 DEVRDRATFYLKNLE 531 (865)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999888777654
No 165
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.2 Score=51.46 Aligned_cols=167 Identities=18% Similarity=0.186 Sum_probs=106.4
Q ss_pred HHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 009636 288 PRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVI 367 (530)
Q Consensus 288 ~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 367 (530)
+.+-+++.+.++-+|.....+++---.+.. +.+++..|+.+--++.+.+||+.|..+|+-++..+++++
T Consensus 522 ~lI~el~~dkdpilR~~Gm~t~alAy~GTg-------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~---- 590 (929)
T KOG2062|consen 522 PLIKELLRDKDPILRYGGMYTLALAYVGTG-------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQL---- 590 (929)
T ss_pred HHHHHHhcCCchhhhhhhHHHHHHHHhccC-------chhhHHHhhcccccccchHHHHHHHHHheeeEecChhhc----
Confidence 455566667777777766655543222221 235677777774444489999999999999999888753
Q ss_pred HhCcHHHHHHHHhc-CchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhh
Q 009636 368 EANIIGPLVALLEN-AEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEA 446 (530)
Q Consensus 368 ~~~~i~~L~~ll~~-~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~ 446 (530)
+..+.+|.. .++.||..++.+|+-.+.+..... ++..|-.+..++..-+++-|+-++..++.....
T Consensus 591 -----~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e--------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~ 657 (929)
T KOG2062|consen 591 -----PSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE--------AINLLEPLTSDPVDFVRQGALIALAMIMIQQTE 657 (929)
T ss_pred -----hHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH--------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhccc
Confidence 455555544 489999999999998877643221 344444555666667899999888877754322
Q ss_pred hhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHH
Q 009636 447 EKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLL 490 (530)
Q Consensus 447 ~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il 490 (530)
. .++-. .|..+.+..+....+++.-.+--.++
T Consensus 658 ~-------~~pkv-----~~frk~l~kvI~dKhEd~~aK~GAil 689 (929)
T KOG2062|consen 658 Q-------LCPKV-----NGFRKQLEKVINDKHEDGMAKFGAIL 689 (929)
T ss_pred c-------cCchH-----HHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 1 11112 23346677777777777554433333
No 166
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.80 E-value=0.061 Score=55.68 Aligned_cols=245 Identities=14% Similarity=0.069 Sum_probs=156.9
Q ss_pred HhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHH-hhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHH
Q 009636 144 IASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALG-NIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNA 222 (530)
Q Consensus 144 l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~-nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a 222 (530)
++......+...++.|+...|+++.....+..+-.+..+|. .+..... + ....++++.+.+.......-..-+
T Consensus 489 ~aA~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~--~----~~~v~~~~~s~~~~d~~~~en~E~ 562 (748)
T KOG4151|consen 489 LAAKEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGE--R----SYEVVKPLDSALHNDEKGLENFEA 562 (748)
T ss_pred HhhhhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCC--c----hhhhhhhhcchhhhhHHHHHHHHH
Confidence 33445566667778899999999998877777777777776 3321111 1 123566666666322222223346
Q ss_pred HHHhhhhccCCCCCC-hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHH-hCcHHHHHHhhCCCCch
Q 009636 223 TWTLSNFCRGKPQPP-FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE-AGVFPRLAEFLMHPSPS 300 (530)
Q Consensus 223 ~~~L~~L~~~~~~~~-~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~ 300 (530)
+.++.||+....... .......++.+-.++..+++..+..++.++.||...+.-....+.+ ..-++.....+......
T Consensus 563 L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~ 642 (748)
T KOG4151|consen 563 LEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEK 642 (748)
T ss_pred HHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhH
Confidence 778888887763332 3333444555666677788999999999999998776654444444 23455555556555666
Q ss_pred hHHHHHHHHhHhhcCCchhhH-HHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHH
Q 009636 301 VLIPALRTVGNIVTGDDMQTQ-CVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALL 379 (530)
Q Consensus 301 ~~~~al~~L~nl~~~~~~~~~-~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll 379 (530)
....++.++..|.......+. ..-.......+..++.++ +..++......+.|+.....+....++....++.+..+-
T Consensus 643 ~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~-~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~ 721 (748)
T KOG4151|consen 643 FELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDE-DDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQ 721 (748)
T ss_pred HhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCc-hhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHH
Confidence 666677777666554444443 222346778888889988 999999999999997777777777777777777776654
Q ss_pred hcCchhHHHHHHHHHH
Q 009636 380 ENAEFDIKKEAAWAIS 395 (530)
Q Consensus 380 ~~~~~~v~~~a~~aL~ 395 (530)
.......++.+..+|.
T Consensus 722 ~~~~a~~~~~~~~~l~ 737 (748)
T KOG4151|consen 722 KLNRAPKREDAAPCLS 737 (748)
T ss_pred HhhhhhhhhhhhhHHH
Confidence 4433344444444443
No 167
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.79 E-value=0.052 Score=45.23 Aligned_cols=127 Identities=13% Similarity=0.103 Sum_probs=97.6
Q ss_pred hhhhHhhcCChHHHHHhhcCCCc-----hhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCC--ChhHHHHHHH
Q 009636 193 CRDLVLSQGGLVPLLAQLNGQPK-----LSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSN--DDEVLTDACW 265 (530)
Q Consensus 193 ~~~~i~~~~~i~~Ll~ll~~~~~-----~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~--d~~v~~~a~~ 265 (530)
+...+++.+++..|++++.+... .++...++.++..|....--.-......++..++..+... |..+...++.
T Consensus 3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa 82 (160)
T PF11841_consen 3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLA 82 (160)
T ss_pred hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence 45667888999999999965443 5788889999999988752222233455666666666543 7889999999
Q ss_pred HHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchh
Q 009636 266 ALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ 319 (530)
Q Consensus 266 ~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~ 319 (530)
.|-+++.+++...+.+.+.=-++.|+..|...+..++..|+..+..+....++.
T Consensus 83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~ 136 (160)
T PF11841_consen 83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDS 136 (160)
T ss_pred HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChH
Confidence 999999988877776666666899999999999999999999988887665543
No 168
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=96.75 E-value=0.014 Score=60.94 Aligned_cols=193 Identities=18% Similarity=0.138 Sum_probs=130.8
Q ss_pred ChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCC--------CC-----hhhhhchHHHHHHhhcCCChhHHHHHHHHHH
Q 009636 202 GLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ--------PP-----FDQVSPALPALAHLIHSNDDEVLTDACWALS 268 (530)
Q Consensus 202 ~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~--------~~-----~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~ 268 (530)
+...++.+|. ++++-..+..+++-+..+.+. .. ......++|.++..+.+.+......-+.+|.
T Consensus 816 ia~klld~Ls---~~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~~~~~K~~yl~~Ls 892 (1030)
T KOG1967|consen 816 IAEKLLDLLS---GPSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETAPGSQKHNYLEALS 892 (1030)
T ss_pred HHHHHHHhcC---CccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccCCccchhHHHHHHH
Confidence 3445666662 234444555555555544311 01 1233678999999998778888888888888
Q ss_pred HhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCc--hhHHH
Q 009636 269 YLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYK--KSIKK 346 (530)
Q Consensus 269 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~--~~v~~ 346 (530)
++..+-+..+-.---..++|.|++.|+-++..++..++.++.-+....+.....-+ ..++|.++.+-.+... ..+|.
T Consensus 893 hVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~-~Tlvp~lLsls~~~~n~~~~VR~ 971 (1030)
T KOG1967|consen 893 HVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHL-STLVPYLLSLSSDNDNNMMVVRE 971 (1030)
T ss_pred HHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHH-hHHHHHHHhcCCCCCcchhHHHH
Confidence 88776554211111236788999999999999999999999888765554432222 3567777777766622 57899
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhh
Q 009636 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNAT 398 (530)
Q Consensus 347 ~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~ 398 (530)
.|..+|..++...|...-......++..|+..|++....||++|..+=.+..
T Consensus 972 ~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~ 1023 (1030)
T KOG1967|consen 972 DALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWY 1023 (1030)
T ss_pred HHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhh
Confidence 9999999999844443334445568889999999888899999987755543
No 169
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.72 E-value=0.53 Score=44.89 Aligned_cols=195 Identities=13% Similarity=0.132 Sum_probs=122.5
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHhccCCh--HHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcC--CchhhHH
Q 009636 247 ALAHLIHSNDDEVLTDACWALSYLSDGTN--DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG--DDMQTQC 322 (530)
Q Consensus 247 ~L~~ll~~~d~~v~~~a~~~l~~l~~~~~--~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~--~~~~~~~ 322 (530)
..+..+.......++.++..+..+..... +.+. -....+++.+.+.++.+...-+..|+++++-++-. .......
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~-~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~e 125 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVE-DRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEE 125 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHH-HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHH
Confidence 34444455568888999888888764322 2211 11224677888888888776777787877777543 2233444
Q ss_pred HhhcCchHHHHHhhcCCC-chhHHHHHHHHHHHHhc---CCHHHHHHHHHhCcHHHHHHH--Hhc----------CchhH
Q 009636 323 VIEYQALPCLLNLLSGNY-KKSIKKEACWTVSNITA---GNREQIQAVIEANIIGPLVAL--LEN----------AEFDI 386 (530)
Q Consensus 323 ~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~l--l~~----------~~~~v 386 (530)
+++ .+.|.|...+.+.. ...+|..++.+|+-++. ..++.....++ .+..+... .+. +++.+
T Consensus 126 i~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~~l 202 (309)
T PF05004_consen 126 IFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDAAL 202 (309)
T ss_pred HHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCccHH
Confidence 444 57788888888762 34566666666666543 34444432222 22211111 111 13568
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhh
Q 009636 387 KKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEA 446 (530)
Q Consensus 387 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~ 446 (530)
...|+.+.+-++...+.......+ ...++.|..+|++.+.+|+..|-++|.-++.....
T Consensus 203 ~~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~ 261 (309)
T PF05004_consen 203 VAAALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLYELARD 261 (309)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhc
Confidence 888888888887765554444433 34589999999999999999999999999877653
No 170
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.71 E-value=0.12 Score=45.95 Aligned_cols=144 Identities=13% Similarity=0.153 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC----CHHHHHHHHHHHHHHhcCC-hhhHHHHHhCCChH
Q 009636 88 GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED----YPQLQFEAAWALTNIASGT-SEHTKVVIDHGAVP 162 (530)
Q Consensus 88 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~----~~~i~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~ 162 (530)
.-...|+..+..++|. .+....+.+..+--.|..+|...+ ..-+|..++.+++.+...+ .+....+...+++|
T Consensus 94 nRVcnaL~LlQcvASH--pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVP 171 (293)
T KOG3036|consen 94 NRVCNALALLQCVASH--PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVP 171 (293)
T ss_pred chHHHHHHHHHHHhcC--cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHH
Confidence 3445677777777766 566777777775556667776543 4678999999999999844 56666777899999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhc-------CChHHHHHhhcCCCchhHHHHHHHHhhhhccCC
Q 009636 163 IFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQ-------GGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (530)
Q Consensus 163 ~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~-------~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~ 233 (530)
..++.+...++..+..|..++..|..++......+... ..+..++..+.+.++..+.+.++.+..+|+.+.
T Consensus 172 lCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp 249 (293)
T KOG3036|consen 172 LCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP 249 (293)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence 99999999999999999999999998876543322211 133344444446778889999999999998874
No 171
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.31 Score=50.22 Aligned_cols=279 Identities=17% Similarity=0.116 Sum_probs=157.2
Q ss_pred cCCHHHHHHhhcCC-------CCHHHHHHHHHHHHHHhc--CChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHh
Q 009636 115 SGVVPRFVEFLLRE-------DYPQLQFEAAWALTNIAS--GTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGN 185 (530)
Q Consensus 115 ~g~v~~Lv~ll~~~-------~~~~i~~~a~~~L~~l~~--~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~n 185 (530)
.|+++.++..|... +++.-.+-|++.+.++.. ........+.+.=+++.++..++++.--++..|+..++.
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~ 486 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST 486 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence 58899999988421 123445667777777665 223333344444556777777788888899999999999
Q ss_pred hhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhh---hhchHHHHHHhhcCCChhHHHH
Q 009636 186 IAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ---VSPALPALAHLIHSNDDEVLTD 262 (530)
Q Consensus 186 l~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~---~~~~l~~L~~ll~~~d~~v~~~ 262 (530)
+..+- ++...-..+.+...+++ .+.+-.++-.|+.++..+..+. ...... +.+.++.|+.+-..-+.++...
T Consensus 487 ~eeDf---kd~~ill~aye~t~ncl-~nn~lpv~ieAalAlq~fi~~~-q~h~k~sahVp~tmekLLsLSn~feiD~LS~ 561 (970)
T COG5656 487 IEEDF---KDNGILLEAYENTHNCL-KNNHLPVMIEAALALQFFIFNE-QSHEKFSAHVPETMEKLLSLSNTFEIDPLSM 561 (970)
T ss_pred HHHhc---ccchHHHHHHHHHHHHH-hcCCcchhhhHHHHHHHHHhch-hhhHHHHhhhhHHHHHHHHhcccccchHHHH
Confidence 85443 33333344566677777 5577788888888888888775 222222 2334444444444445555555
Q ss_pred HHHHH-HHhccCC----hHHHHHHHHhCcHHHHHHhhCCCC------chhHHHHHHHHhHhhc---C--CchhhHHHhhc
Q 009636 263 ACWAL-SYLSDGT----NDKIQAVIEAGVFPRLAEFLMHPS------PSVLIPALRTVGNIVT---G--DDMQTQCVIEY 326 (530)
Q Consensus 263 a~~~l-~~l~~~~----~~~~~~~~~~~~l~~L~~lL~~~~------~~~~~~al~~L~nl~~---~--~~~~~~~~~~~ 326 (530)
++..+ .+.++.- .+....++. .++.....++.+++ .+-+..|.++|..+.+ . +....-.-+..
T Consensus 562 vMe~fVe~fseELspfa~eLa~~Lv~-qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~ 640 (970)
T COG5656 562 VMESFVEYFSEELSPFAPELAGSLVR-QFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEV 640 (970)
T ss_pred HHHHHHHHhHHhhchhHHHHHHHHHH-HHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 55444 2222221 111111111 22223333333321 1234445544444432 1 11111112344
Q ss_pred CchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCc-hhHHHHHHHHHHHhhcCCC
Q 009636 327 QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAE-FDIKKEAAWAISNATSGGT 402 (530)
Q Consensus 327 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~-~~v~~~a~~aL~nl~~~~~ 402 (530)
...|.+--+|++. ..++-.+|+-.+-+.+-...+.-. +.-|+.+.+.+++.+.. ...-.++.-++.|+...|.
T Consensus 641 slypvi~Filkn~-i~dfy~Ea~dildg~tf~skeI~p--imwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~ 714 (970)
T COG5656 641 SLYPVISFILKNE-ISDFYQEALDILDGYTFMSKEIEP--IMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGK 714 (970)
T ss_pred HHHHHHHHHHhhh-HHHHHHHHHHHHhhhhHHHHHhhh--hhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCc
Confidence 5667777777777 777888888888777654322221 11245666666666554 3677888999999988763
No 172
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.68 E-value=0.26 Score=50.18 Aligned_cols=131 Identities=16% Similarity=0.170 Sum_probs=87.5
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhh
Q 009636 163 IFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVS 242 (530)
Q Consensus 163 ~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~ 242 (530)
.++...+ .+...+..|+..|.....+-|...+. ++..+++++ .+.+..++..|+..|..+|.+.+ ..+.
T Consensus 27 ~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLc-EDed~~iR~~aik~lp~~ck~~~----~~v~ 95 (556)
T PF05918_consen 27 EILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLC-EDEDVQIRKQAIKGLPQLCKDNP----EHVS 95 (556)
T ss_dssp HHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHH-T-SSHHHHHHHHHHGGGG--T------T-HH
T ss_pred HHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhHHHHHHhHH----HHHh
Confidence 4555554 46889999999999999998887666 688899999 78899999999999999998843 3457
Q ss_pred chHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhC---CCCchhHHHHHHHHhHh
Q 009636 243 PALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM---HPSPSVLIPALRTVGNI 312 (530)
Q Consensus 243 ~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~---~~~~~~~~~al~~L~nl 312 (530)
.+..+|+++|.++++.-...+=++|..+...++. +.+..+...+. .++..+++.++..|..-
T Consensus 96 kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k--------~tL~~lf~~i~~~~~~de~~Re~~lkFl~~k 160 (556)
T PF05918_consen 96 KVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPK--------GTLTGLFSQIESSKSGDEQVRERALKFLREK 160 (556)
T ss_dssp HHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHH---HS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHhcccCchHHHHHHHHHHHHH
Confidence 7888999999998877666666677666544432 22233333332 46677899988777443
No 173
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.67 E-value=0.0052 Score=48.33 Aligned_cols=73 Identities=14% Similarity=0.202 Sum_probs=61.6
Q ss_pred CchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009636 327 QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS 399 (530)
Q Consensus 327 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 399 (530)
.++..|+.+|..+.++.+...||.-|+.++...|..+..+-+.|+-..+++++.++|++||.+|+.|+..+..
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4688899999655488888999999999999878887777788999999999999999999999999988764
No 174
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.63 E-value=0.21 Score=45.24 Aligned_cols=187 Identities=13% Similarity=0.142 Sum_probs=118.7
Q ss_pred CChhHHHHHHHHHHHhccCChHHHHHHHH-hCcHHHHHHh-------hCCCC--c---hhHHHHHHHHhHhhcCCchhhH
Q 009636 255 NDDEVLTDACWALSYLSDGTNDKIQAVIE-AGVFPRLAEF-------LMHPS--P---SVLIPALRTVGNIVTGDDMQTQ 321 (530)
Q Consensus 255 ~d~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~l~~L~~l-------L~~~~--~---~~~~~al~~L~nl~~~~~~~~~ 321 (530)
.+++.++.|+.-|+.--+..++..-.+.. .|.+..|++= +..++ . .-...|+..+-.++. +++.+.
T Consensus 7 ~~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~ 85 (262)
T PF04078_consen 7 CNPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRM 85 (262)
T ss_dssp SSHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHH
T ss_pred cCcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHH
Confidence 35667777777666655544444333332 3555544332 23222 1 223445555666666 566667
Q ss_pred HHhhcCchHHHHHhhcCCC----chhHHHHHHHHHHHHhc-CCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHH
Q 009636 322 CVIEYQALPCLLNLLSGNY----KKSIKKEACWTVSNITA-GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISN 396 (530)
Q Consensus 322 ~~~~~~~l~~L~~lL~~~~----~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~n 396 (530)
.++++++.-.|..+|+... -+.+|-.+..+++.+.. ++++.+..+.+.+++|..++.++.++.-.|..|...+..
T Consensus 86 ~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqK 165 (262)
T PF04078_consen 86 PFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQK 165 (262)
T ss_dssp HHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 8889998888888886542 24688889999999987 678889999999999999999999998999999999999
Q ss_pred hhcCCCHHHHHHHHHc--------CChHHHH-hccCCCChHHHHHHHHHHHHHHHhh
Q 009636 397 ATSGGTHEQIKFLVIQ--------GCIKPLC-DLLVCPDPRIVTVCLEGLENILKVG 444 (530)
Q Consensus 397 l~~~~~~~~~~~l~~~--------~~i~~L~-~lL~~~~~~~~~~al~~l~~ll~~~ 444 (530)
+... .....++.+. .++..++ .+.+.+++.+...++.+...+....
T Consensus 166 IL~d--d~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp 220 (262)
T PF04078_consen 166 ILLD--DVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP 220 (262)
T ss_dssp HHHS--HHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST
T ss_pred HHcc--hhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH
Confidence 8873 3444444321 1233332 2345678888888888877776544
No 175
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.56 E-value=1.9 Score=48.50 Aligned_cols=257 Identities=15% Similarity=0.115 Sum_probs=138.5
Q ss_pred hHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhh--
Q 009636 217 SMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL-- 294 (530)
Q Consensus 217 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL-- 294 (530)
.+..+.+..+....---+.+...+...+=..|.+++-..+......|..|++.++..-......+. .++....+.|
T Consensus 1095 ~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~~~v~--~cf~~~~k~le~ 1172 (1692)
T KOG1020|consen 1095 QFLYYVIQILECVLPLVANPSESFLASLEEDLLKRIVKMGMATVVEAVSCLGSLATKRTDGAKVVK--ACFSCYLKLLEV 1172 (1692)
T ss_pred HHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhccchHHHH--HHHHHHHHHHHH
Confidence 344444444443333333444444455555556655555556666777777777653111111111 1222333322
Q ss_pred -CCC--------CchhHHHHHHHHhHhhcCCch-----------hhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 009636 295 -MHP--------SPSVLIPALRTVGNIVTGDDM-----------QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN 354 (530)
Q Consensus 295 -~~~--------~~~~~~~al~~L~nl~~~~~~-----------~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n 354 (530)
++. ........+.++|-++++-+. +....+..+++..|.-..++. +..+|..|...++.
T Consensus 1173 ~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~-~~~lR~~al~~Lg~ 1251 (1692)
T KOG1020|consen 1173 IKSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDK-DGELRRKALINLGF 1251 (1692)
T ss_pred HHhccccccchhhhHHHHHHHHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHH
Confidence 222 224566788889988873221 111234556777777777777 88999999999999
Q ss_pred HhcCCHHHHHHHHHhCcHHHHHHHHhcCchhH--HHHHHHHHHHhhcCC---------------CHHHHHHHH-------
Q 009636 355 ITAGNREQIQAVIEANIIGPLVALLENAEFDI--KKEAAWAISNATSGG---------------THEQIKFLV------- 410 (530)
Q Consensus 355 l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v--~~~a~~aL~nl~~~~---------------~~~~~~~l~------- 410 (530)
+|...+.. +....+...+...+.+.+... +..++..+.-+.... ..+..+.+.
T Consensus 1252 ~ci~hp~l---~~~~~v~nly~~ila~~n~~~~~ki~~l~n~~~yL~eee~~l~~~~~~w~~~~k~edlkem~~v~sg~~ 1328 (1692)
T KOG1020|consen 1252 ICIQHPSL---FTSREVLNLYDEILADDNSDIKSKIQLLQNLELYLLEEEKKLRNKGKNWTKSNKSEDLKEMLDVSSGMG 1328 (1692)
T ss_pred HHhhCchh---hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhcccccccc
Confidence 99855442 333334444444554442221 233332222222100 112222221
Q ss_pred HcCC--------hHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHH
Q 009636 411 IQGC--------IKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEI 482 (530)
Q Consensus 411 ~~~~--------i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v 482 (530)
..|+ ++.+++..-+.|..++..|+..+..++..|-- +| --.+..|..|..++.+.+
T Consensus 1329 s~~~~~~i~Qlfl~~ILe~cl~~d~~~r~~aikvl~liL~QGLV---------hP-------~~cvPtLIAL~Tdp~~~~ 1392 (1692)
T KOG1020|consen 1329 SSDGVSAIMQLFLDNILESCLDRDLQVRLVAIKVLKLILNQGLV---------HP-------VHCVPTLIALETDPSQAI 1392 (1692)
T ss_pred cccchHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHccCC---------Cc-------cchhhhheeecCChHHHH
Confidence 1111 22233333357788899999999888877632 22 123678888888899999
Q ss_pred HHHHHHHHHHhCC
Q 009636 483 YEKSVKLLETYWL 495 (530)
Q Consensus 483 ~~~a~~il~~~~~ 495 (530)
+++|..++...+.
T Consensus 1393 r~~Ad~LL~eid~ 1405 (1692)
T KOG1020|consen 1393 RHVADELLKEIDE 1405 (1692)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988887654
No 176
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.51 E-value=0.14 Score=50.19 Aligned_cols=148 Identities=12% Similarity=0.207 Sum_probs=95.7
Q ss_pred hcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHH-HHhcCchhHHHHHHHHHHHhhcCCCHHHHH-HHHHcC
Q 009636 336 LSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVA-LLENAEFDIKKEAAWAISNATSGGTHEQIK-FLVIQG 413 (530)
Q Consensus 336 L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~-ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~-~l~~~~ 413 (530)
..++ +..+|..|+..|+|.+.+.|+.+...... ++..++. +.+..+.+|..++..+|..+.......... +++ .
T Consensus 267 a~dp-~a~~r~~a~r~L~~~as~~P~kv~th~~~-~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l--~ 342 (533)
T KOG2032|consen 267 ATDP-SAKSRGMACRGLGNTASGAPDKVRTHKTT-QLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLL--N 342 (533)
T ss_pred ccCc-hhHHHHHHHHHHHHHhccCcHHHHHhHHH-HHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhch--h
Confidence 3445 66899999999999999866665554443 3444444 444457899999999999887754333322 221 2
Q ss_pred ChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009636 414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETY 493 (530)
Q Consensus 414 ~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~ 493 (530)
+...+..+.++.+++++..+...++.+.++..... ...|.+.+. ++...+.--.+++++.+...+...+...
T Consensus 343 ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~------e~~Fte~v~--k~~~~lllhl~d~~p~va~ACr~~~~~c 414 (533)
T KOG2032|consen 343 IALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGW------EEFFTEQVK--KRLAPLLLHLQDPNPYVARACRSELRTC 414 (533)
T ss_pred HHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCc------hhhhHHHHH--hccccceeeeCCCChHHHHHHHHHHHhc
Confidence 34456778889999999999999999987664422 112333222 2223333335678888877777766654
Q ss_pred CC
Q 009636 494 WL 495 (530)
Q Consensus 494 ~~ 495 (530)
++
T Consensus 415 ~p 416 (533)
T KOG2032|consen 415 YP 416 (533)
T ss_pred Cc
Confidence 43
No 177
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.50 E-value=2.1 Score=48.19 Aligned_cols=144 Identities=9% Similarity=0.048 Sum_probs=98.4
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009636 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 153 (530)
.+..++..+..+-..++-.|+++|..++.....--....++.+ +-.-+.++. ..+|..|+..++......++...
T Consensus 817 yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~----Vh~R~~Dss-asVREAaldLvGrfvl~~~e~~~ 891 (1692)
T KOG1020|consen 817 YLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEA----VHGRLNDSS-ASVREAALDLVGRFVLSIPELIF 891 (1692)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHH----HHHhhccch-hHHHHHHHHHHhhhhhccHHHHH
Confidence 4566666777777899999999999998764211122333333 333333444 78999999999988776666655
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc--CCCchhHHHHHHHHhhhhcc
Q 009636 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN--GQPKLSMLRNATWTLSNFCR 231 (530)
Q Consensus 154 ~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~--~~~~~~~~~~a~~~L~~L~~ 231 (530)
... ..+..-+.++...+|..++..+..+|...|.+-.. +..+.+++. .+....++.-++.++.++-.
T Consensus 892 qyY-----~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i------~~~cakmlrRv~DEEg~I~kLv~etf~klWF 960 (1692)
T KOG1020|consen 892 QYY-----DQIIERILDTGVSVRKRVIKILRDICEETPDFSKI------VDMCAKMLRRVNDEEGNIKKLVRETFLKLWF 960 (1692)
T ss_pred HHH-----HHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhH------HHHHHHHHHHhccchhHHHHHHHHHHHHHhc
Confidence 543 34555566678899999999999999888765332 233344443 34444588999999998887
Q ss_pred CC
Q 009636 232 GK 233 (530)
Q Consensus 232 ~~ 233 (530)
.+
T Consensus 961 ~p 962 (1692)
T KOG1020|consen 961 TP 962 (1692)
T ss_pred cC
Confidence 75
No 178
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=96.49 E-value=1.2 Score=45.38 Aligned_cols=287 Identities=13% Similarity=0.100 Sum_probs=155.2
Q ss_pred hHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH
Q 009636 87 SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK 166 (530)
Q Consensus 87 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ 166 (530)
-..+..|+..++..+..-+...+.. +....-.++.....++.|..+...|..++........... ..+.+
T Consensus 4 l~~R~~a~~~l~~~i~~~~~~~i~~-----iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R-----~~fF~ 73 (464)
T PF11864_consen 4 LSERIKAAEELCESIQKYPLSSIEE-----IWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMR-----AEFFR 73 (464)
T ss_pred HHHHHHHHHHHHHHHHhCCchHHHH-----HHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHH-----HHHHH
Confidence 3467788888888776643323332 2333345666555578899999999888885443211111 11222
Q ss_pred hhC-CCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcC--------------------------CCchhHH
Q 009636 167 LLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG--------------------------QPKLSML 219 (530)
Q Consensus 167 ll~-~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~--------------------------~~~~~~~ 219 (530)
.+. ...++....-+.+|..|+.++... ...+.++.+.|...+.. +.+....
T Consensus 74 ~I~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l 151 (464)
T PF11864_consen 74 DISDPSNDDDFDLRLEALIALTDNGRDI--DFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNL 151 (464)
T ss_pred HHhcCCCchhHHHHHHHHHHHHcCCcCc--hhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhH
Confidence 222 233433445556666666555443 12355566666655521 0123334
Q ss_pred HHHHHHhhhhccCC-CCCChhhhhchHHHHHHhhc-CCChhHHHHHHHHHHHhccC---ChHHHHHHHHhCcHHHHHHhh
Q 009636 220 RNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIH-SNDDEVLTDACWALSYLSDG---TNDKIQAVIEAGVFPRLAEFL 294 (530)
Q Consensus 220 ~~a~~~L~~L~~~~-~~~~~~~~~~~l~~L~~ll~-~~d~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~l~~L~~lL 294 (530)
...+..+.++.... .........+++..+..+.. +..+.....++..+-.+... +.+... .++..|....
T Consensus 152 ~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~-----~~i~vLCsi~ 226 (464)
T PF11864_consen 152 SDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLS-----PCIEVLCSIV 226 (464)
T ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHH-----HHHHHHhhHh
Confidence 44555555655554 33334445555555555533 33344444444444333322 222211 2333444442
Q ss_pred CCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCC-----CchhHHHHHHHHHHHHhcCCHHHHHHHHH-
Q 009636 295 MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-----YKKSIKKEACWTVSNITAGNREQIQAVIE- 368 (530)
Q Consensus 295 ~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~- 368 (530)
. ..+....+-.++.||+...-.+ ..+..|..+|..+ .+..+.+-|...+..+..+..+....-+.
T Consensus 227 ~--~~~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~ 297 (464)
T PF11864_consen 227 N--SVSLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPF 297 (464)
T ss_pred c--ccccchhHHHHHHHHHcCccHH-------HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecc
Confidence 2 2256777888888888643322 2356677777322 13456677888888877655222222121
Q ss_pred h--CcHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009636 369 A--NIIGPLVALLENAEFDIKKEAAWAISNATS 399 (530)
Q Consensus 369 ~--~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 399 (530)
. -+++.|...++..+..+-.+++..+.++..
T Consensus 298 ~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~ 330 (464)
T PF11864_consen 298 SPSSVLPSLLNALKSNSPRVDYEILLLINRLLD 330 (464)
T ss_pred cHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHh
Confidence 2 278888999998888888888888888884
No 179
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.47 E-value=0.35 Score=46.10 Aligned_cols=171 Identities=16% Similarity=0.119 Sum_probs=110.1
Q ss_pred CCHHHHH-HhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCC-Cchh
Q 009636 116 GVVPRFV-EFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGD-SPRC 193 (530)
Q Consensus 116 g~v~~Lv-~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~-~~~~ 193 (530)
+++..|+ ..+++.+ +.+|..|+.||+-.+--+.+.... .++.+.+.++..+..++..|+.++..+... +...
T Consensus 26 ~ll~~lI~P~v~~~~-~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 26 SLLDSLILPAVQSSD-PAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence 4455554 6777887 899999999999999866544433 356777777667899999999999988732 2111
Q ss_pred hhh-------HhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcC----CChhHHHH
Q 009636 194 RDL-------VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS----NDDEVLTD 262 (530)
Q Consensus 194 ~~~-------i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~----~d~~v~~~ 262 (530)
-+. ......+..+.+.+ .+.+++++..++..++.|........ ...++..|+-+..+ ++..++..
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l-~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~ 175 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFL-DSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQC 175 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence 111 11233555666667 56688999999999999887753333 23334443333322 24566666
Q ss_pred HHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC
Q 009636 263 ACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP 297 (530)
Q Consensus 263 a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~ 297 (530)
....+-..+.....+. ..+...+++.+..+....
T Consensus 176 L~~Ffp~y~~s~~~~Q-~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 176 LSVFFPVYASSSPENQ-ERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHhCc
Confidence 6666666666665553 455556777777766553
No 180
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.40 E-value=0.89 Score=48.81 Aligned_cols=239 Identities=17% Similarity=0.179 Sum_probs=137.3
Q ss_pred hchHHHHHHhhcC-----CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhC----CCC----chhHHHHHHH
Q 009636 242 SPALPALAHLIHS-----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM----HPS----PSVLIPALRT 308 (530)
Q Consensus 242 ~~~l~~L~~ll~~-----~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~----~~~----~~~~~~al~~ 308 (530)
.+++..++.++.+ .+.+....++..+.+++.- ..+.+.+++.+.++.|+..+. .+. ..+.+..+.+
T Consensus 116 ~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~I 194 (802)
T PF13764_consen 116 CGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEI 194 (802)
T ss_pred CCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHH
Confidence 3455555555543 2345666667777776655 445677888999999888874 333 5666777777
Q ss_pred HhHhhcCCchhhHHH----h--------hcCchHHHHHhhcCCC---chhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHH
Q 009636 309 VGNIVTGDDMQTQCV----I--------EYQALPCLLNLLSGNY---KKSIKKEACWTVSNITAGNREQIQAVIEANIIG 373 (530)
Q Consensus 309 L~nl~~~~~~~~~~~----~--------~~~~l~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~ 373 (530)
+..+........... . +...+..|+..+.+.. ++.+....+.+|.+++.++++..+.+++ .+.
T Consensus 195 iE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~--~F~ 272 (802)
T PF13764_consen 195 IESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE--HFK 272 (802)
T ss_pred HHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH--HHH
Confidence 766654222110000 0 1123666666666542 5788899999999999999998888876 233
Q ss_pred HHHHHHhcC--chhHHHHHHHHHHHhhcCC-----CHHHHHHHHHcCChHHHHhccCCCC--------hH--------HH
Q 009636 374 PLVALLENA--EFDIKKEAAWAISNATSGG-----THEQIKFLVIQGCIKPLCDLLVCPD--------PR--------IV 430 (530)
Q Consensus 374 ~L~~ll~~~--~~~v~~~a~~aL~nl~~~~-----~~~~~~~l~~~~~i~~L~~lL~~~~--------~~--------~~ 430 (530)
+.+++=.-+ ...--...+.+++.++.+- .......+++.|++...+++|...- ++ -+
T Consensus 273 p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psL 352 (802)
T PF13764_consen 273 PYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSL 352 (802)
T ss_pred HhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcH
Confidence 333322111 1010122355666665432 2356677788999988877774322 21 12
Q ss_pred HHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHH-hcCCCHHHHHHHHHHHHHhCC
Q 009636 431 TVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESL-QTHDNAEIYEKSVKLLETYWL 495 (530)
Q Consensus 431 ~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l-~~~~~~~v~~~a~~il~~~~~ 495 (530)
..++..|.-+....+. .+.+...+++..+..| +.+....|-..|.++|+.+-+
T Consensus 353 p~iL~lL~GLa~gh~~------------tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~ 406 (802)
T PF13764_consen 353 PYILRLLRGLARGHEP------------TQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAE 406 (802)
T ss_pred HHHHHHHHHHHhcCHH------------HHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence 2344444444443332 2222335566666666 344467777788887776544
No 181
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.40 E-value=0.096 Score=56.56 Aligned_cols=147 Identities=18% Similarity=0.184 Sum_probs=115.3
Q ss_pred hhhchHHHHHHhhc----CCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhC-CCCchhHHHHHHHHhHhhc
Q 009636 240 QVSPALPALAHLIH----SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM-HPSPSVLIPALRTVGNIVT 314 (530)
Q Consensus 240 ~~~~~l~~L~~ll~----~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~~~~~al~~L~nl~~ 314 (530)
....+.|.++...+ .+||+++..|.-+++.+..-+.. +++ .-++.|+..+. ++++.++.++.-++|.++-
T Consensus 916 lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~----fce-s~l~llftimeksp~p~IRsN~VvalgDlav 990 (1251)
T KOG0414|consen 916 LLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAE----FCE-SHLPLLFTIMEKSPSPRIRSNLVVALGDLAV 990 (1251)
T ss_pred HHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHH----HHH-HHHHHHHHHHhcCCCceeeecchheccchhh
Confidence 34567788888874 45799999999999988755433 222 45688888887 6889999999999999987
Q ss_pred CCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHH
Q 009636 315 GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAI 394 (530)
Q Consensus 315 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL 394 (530)
..+...+ ..-+.|...|.+. ++.+|+.|..+|++|...+. +--.|.+..+..++.+++.+++.-|-..+
T Consensus 991 ~fpnlie-----~~T~~Ly~rL~D~-~~~vRkta~lvlshLILndm-----iKVKGql~eMA~cl~D~~~~IsdlAk~FF 1059 (1251)
T KOG0414|consen 991 RFPNLIE-----PWTEHLYRRLRDE-SPSVRKTALLVLSHLILNDM-----IKVKGQLSEMALCLEDPNAEISDLAKSFF 1059 (1251)
T ss_pred hcccccc-----hhhHHHHHHhcCc-cHHHHHHHHHHHHHHHHhhh-----hHhcccHHHHHHHhcCCcHHHHHHHHHHH
Confidence 6664432 3456788889988 99999999999999976542 22368999999999999999999999888
Q ss_pred HHhhcCCC
Q 009636 395 SNATSGGT 402 (530)
Q Consensus 395 ~nl~~~~~ 402 (530)
..++..++
T Consensus 1060 ~Els~k~n 1067 (1251)
T KOG0414|consen 1060 KELSSKGN 1067 (1251)
T ss_pred HHhhhccc
Confidence 88877664
No 182
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.36 E-value=0.37 Score=45.96 Aligned_cols=172 Identities=16% Similarity=0.134 Sum_probs=114.9
Q ss_pred hchHHHH-HHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCch-h
Q 009636 242 SPALPAL-AHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM-Q 319 (530)
Q Consensus 242 ~~~l~~L-~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~-~ 319 (530)
.+++..| .+.+.+.++.++..++.+++-.+--+..... ..++.+...+..++..++..|+.++..+...... .
T Consensus 25 ~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 25 ESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence 3566544 4788899999999999999988865543322 3456677777778889999999999998753321 1
Q ss_pred hHH-------HhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhc----CchhHHH
Q 009636 320 TQC-------VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLEN----AEFDIKK 388 (530)
Q Consensus 320 ~~~-------~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~----~~~~v~~ 388 (530)
... .-...++..+.+.+.+. +++++..|+-.++.+.....-.- ...++..|+-+.-+ ++..+|+
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ 174 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFLDSE-NPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQ 174 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHH
Confidence 111 11246788899999998 99999999999999875321110 12244444444322 2467888
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCC
Q 009636 389 EAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP 425 (530)
Q Consensus 389 ~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~ 425 (530)
--...+-..+.. ++++ +..+...+++.+..+.+..
T Consensus 175 ~L~~Ffp~y~~s-~~~~-Q~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 175 CLSVFFPVYASS-SPEN-QERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHHHHHHcC-CHHH-HHHHHHHHHHHHHHHHhCc
Confidence 777777777775 3444 3445566777777766543
No 183
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.33 E-value=0.23 Score=51.96 Aligned_cols=220 Identities=10% Similarity=0.092 Sum_probs=136.4
Q ss_pred CCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHH
Q 009636 212 GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLA 291 (530)
Q Consensus 212 ~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~ 291 (530)
.++.+.++.+++..+..+.+...........+++......+++.|+-+--+++..+..+++-.++ .+++.+.
T Consensus 737 ~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e--------~il~dL~ 808 (982)
T KOG4653|consen 737 HDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE--------DILPDLS 808 (982)
T ss_pred cCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch--------hhHHHHH
Confidence 45567788999999999999776666777789999999999999999888888887777755332 4566666
Q ss_pred Hh-hCCCC---chhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 009636 292 EF-LMHPS---PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVI 367 (530)
Q Consensus 292 ~l-L~~~~---~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 367 (530)
.. .+..+ .+.+...-.++.+++..-.+......+ -++..++...+++ +...|..++..++++|....-.....+
T Consensus 809 e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrep-d~~~RaSS~a~lg~Lcq~~a~~vsd~~ 886 (982)
T KOG4653|consen 809 EEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREP-DHEFRASSLANLGQLCQLLAFQVSDFF 886 (982)
T ss_pred HHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCc-hHHHHHhHHHHHHHHHHHHhhhhhHHH
Confidence 63 32221 233333445555555433322222222 4566777777776 778899999999999874332222222
Q ss_pred HhCcHHHHHHHHhc-CchhHHHHHHHHHHHhhcCCCHHHHHHH--HHcCChHHHHhccCCC-ChHHHHHHHHHHHHHHH
Q 009636 368 EANIIGPLVALLEN-AEFDIKKEAAWAISNATSGGTHEQIKFL--VIQGCIKPLCDLLVCP-DPRIVTVCLEGLENILK 442 (530)
Q Consensus 368 ~~~~i~~L~~ll~~-~~~~v~~~a~~aL~nl~~~~~~~~~~~l--~~~~~i~~L~~lL~~~-~~~~~~~al~~l~~ll~ 442 (530)
. .++..++.+... +.+-+|+.|+..+..+..+-..+....+ .-.+....+..+.... +..+...+..++..+-.
T Consensus 887 ~-ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a 964 (982)
T KOG4653|consen 887 H-EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQA 964 (982)
T ss_pred H-HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Confidence 1 245555555544 4688999999999999886554433322 1113333444444333 33344445555544443
No 184
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=96.30 E-value=0.3 Score=50.10 Aligned_cols=193 Identities=13% Similarity=0.169 Sum_probs=137.8
Q ss_pred hhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchh
Q 009636 240 QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ 319 (530)
Q Consensus 240 ~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~ 319 (530)
...+++|.|++++...|..++...+.-+-.....-. ...++..+++.+..-+.+.++.++...+.++..++..-..
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt---~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~- 402 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLT---KQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSK- 402 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcC---HHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhch-
Confidence 557899999999999999999887766655544332 3356668899999999999999999999999888853221
Q ss_pred hHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhC-cHHHHHHHHhcCchhHHHHHHHHHHHhh
Q 009636 320 TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEAN-IIGPLVALLENAEFDIKKEAAWAISNAT 398 (530)
Q Consensus 320 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~-~i~~L~~ll~~~~~~v~~~a~~aL~nl~ 398 (530)
..+...++..+..+-.+. +..+|....-+|+.++....... ..+ ....+.+.+.++-..-|..+.+++....
T Consensus 403 --~~Ln~Ellr~~ar~q~d~-~~~irtntticlgki~~~l~~~~----R~~vL~~aftralkdpf~paR~a~v~~l~at~ 475 (690)
T KOG1243|consen 403 --RNLNGELLRYLARLQPDE-HGGIRTNTTICLGKIAPHLAASV----RKRVLASAFTRALKDPFVPARKAGVLALAATQ 475 (690)
T ss_pred --hhhcHHHHHHHHhhCccc-cCcccccceeeecccccccchhh----hccccchhhhhhhcCCCCCchhhhhHHHhhcc
Confidence 234444555555555544 78899998889998876532222 223 3345555667676778888888887665
Q ss_pred cCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhh
Q 009636 399 SGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAE 447 (530)
Q Consensus 399 ~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~ 447 (530)
..-.... +...+++.++.+.-+++..++..+..++...+...++.
T Consensus 476 ~~~~~~~----va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~~ 520 (690)
T KOG1243|consen 476 EYFDQSE----VANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEKV 520 (690)
T ss_pred cccchhh----hhhhccccccccccCcccchhhHHHHHHHHHHhhhhhh
Confidence 5332222 33467888888888999999999999998888776654
No 185
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.25 E-value=0.16 Score=53.05 Aligned_cols=222 Identities=13% Similarity=0.151 Sum_probs=135.8
Q ss_pred HHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhch
Q 009636 165 VKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPA 244 (530)
Q Consensus 165 ~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~ 244 (530)
+..+.++-+.++-.++..|..+..... ....+...+++...+..+ .+.|.-+.-+|...+..||...| ..+
T Consensus 733 i~sl~d~qvpik~~gL~~l~~l~e~r~-~~~~~~~ekvl~i~ld~L-kdedsyvyLnaI~gv~~Lcevy~-------e~i 803 (982)
T KOG4653|consen 733 ISSLHDDQVPIKGYGLQMLRHLIEKRK-KATLIQGEKVLAIALDTL-KDEDSYVYLNAIRGVVSLCEVYP-------EDI 803 (982)
T ss_pred HHHhcCCcccchHHHHHHHHHHHHhcc-hhhhhhHHHHHHHHHHHh-cccCceeeHHHHHHHHHHHHhcc-------hhh
Confidence 334444556788889999999987553 345666777888899999 78889999999998888987743 556
Q ss_pred HHHHHHhhcCC-C---hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhh
Q 009636 245 LPALAHLIHSN-D---DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQT 320 (530)
Q Consensus 245 l~~L~~ll~~~-d---~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~ 320 (530)
+|.+...-.+. + .+-+-.+-.++.++...-.+....... -++...+..+.+++...|..++..+|+++.......
T Consensus 804 l~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~v 882 (982)
T KOG4653|consen 804 LPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQV 882 (982)
T ss_pred HHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhh
Confidence 66666633221 1 222333335555555433332222222 455667777777777789999999999986544332
Q ss_pred HHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH---HhCcHHHHHHHHhcC-chhHHHHHHHHHHH
Q 009636 321 QCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVI---EANIIGPLVALLENA-EFDIKKEAAWAISN 396 (530)
Q Consensus 321 ~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~---~~~~i~~L~~ll~~~-~~~v~~~a~~aL~n 396 (530)
...+ ..++..++.+...+...-+|+.|+..+..+..+.....-.+. .......+....... +..++..|+.++-.
T Consensus 883 sd~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~lee 961 (982)
T KOG4653|consen 883 SDFF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEE 961 (982)
T ss_pred hHHH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 2211 234555666666554788999999999988876543222222 112333333333333 44566666655543
Q ss_pred h
Q 009636 397 A 397 (530)
Q Consensus 397 l 397 (530)
+
T Consensus 962 i 962 (982)
T KOG4653|consen 962 I 962 (982)
T ss_pred H
Confidence 3
No 186
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=96.25 E-value=0.055 Score=45.89 Aligned_cols=144 Identities=15% Similarity=0.133 Sum_probs=100.6
Q ss_pred HHHHHhhC--CCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 009636 288 PRLAEFLM--HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQA 365 (530)
Q Consensus 288 ~~L~~lL~--~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 365 (530)
+.++..|. ...+.++..++-++..+.. ....-....+-+.+-..+... +.+-...++.+++.+.-+.++....
T Consensus 6 ~~lL~~L~~~~~~~~~r~~a~v~l~k~l~----~~~~~~~~~~~~~i~~~~~~~-~~d~~i~~~~~l~~lfp~~~dv~~~ 80 (157)
T PF11701_consen 6 DTLLTSLDMLRQPEEVRSHALVILSKLLD----AAREEFKEKISDFIESLLDEG-EMDSLIIAFSALTALFPGPPDVGSE 80 (157)
T ss_dssp CHHHHHHHCTTTSCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHCCH-HCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred HHHHHHhcccCCCHhHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHccc-cchhHHHHHHHHHHHhCCCHHHHHH
Confidence 34444444 3567789999888888852 111222333445555666655 6667788889999998888888777
Q ss_pred HH-HhCcHHHHHHHHh--cCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccC-CCChH-HHHHHHHHHHH
Q 009636 366 VI-EANIIGPLVALLE--NAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV-CPDPR-IVTVCLEGLEN 439 (530)
Q Consensus 366 l~-~~~~i~~L~~ll~--~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~-~~~~~-~~~~al~~l~~ 439 (530)
++ ..|+++.+..++. ..+..++..++.+|..-+.. +.++..+...+++.|-.+++ ++++. ++..++-+|.+
T Consensus 81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d---~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID---KSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS---HHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 76 5789999999998 77889999999999887773 44555566677999999996 45555 67666666654
No 187
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=96.23 E-value=1.3 Score=43.56 Aligned_cols=193 Identities=15% Similarity=0.135 Sum_probs=120.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCC-chhhhhHhhcCChHHHHHhhcCCC
Q 009636 136 EAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS-PRCRDLVLSQGGLVPLLAQLNGQP 214 (530)
Q Consensus 136 ~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~-~~~~~~i~~~~~i~~Ll~ll~~~~ 214 (530)
.|++.|-.+....+.....+.+.+++..++..+...-....+. .-...-.... ++.+..... ...+ ...
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~--~~~~~~~~~~~~~~~~~~~~-------~~~i-~~~ 72 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEE--NKNEEAGSGIPPEYKESSVD-------GYSI-SYQ 72 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--ccccCCCCCCCCCccccccc-------cccc-CHH
Confidence 4677788888877788888899999999999885321111110 0000000010 111111100 0000 111
Q ss_pred chhHHHHHHHHhhhhcc-CCCC--CC-hhhh-hchHHHHHHhhcCC---ChhHHHHHHHHHHHhccCChHHHHHHHHhCc
Q 009636 215 KLSMLRNATWTLSNFCR-GKPQ--PP-FDQV-SPALPALAHLIHSN---DDEVLTDACWALSYLSDGTNDKIQAVIEAGV 286 (530)
Q Consensus 215 ~~~~~~~a~~~L~~L~~-~~~~--~~-~~~~-~~~l~~L~~ll~~~---d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~ 286 (530)
...+.+..+.++..+.. .... .. .... ..++..|...+++. .+.+...++..+..+..+.+.....+.+.|+
T Consensus 73 r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl 152 (379)
T PF06025_consen 73 RQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGL 152 (379)
T ss_pred HHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCC
Confidence 23444555555555555 2211 11 1222 34555666777655 5788899999999999999988899999999
Q ss_pred HHHHHHhhC-C---CCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCC
Q 009636 287 FPRLAEFLM-H---PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN 339 (530)
Q Consensus 287 l~~L~~lL~-~---~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~ 339 (530)
++.+++.+. . .+.++....-.+++.||- +....+.+.+.+.++.+++++.+.
T Consensus 153 ~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL-N~~Gl~~~~~~~~l~~~f~if~s~ 208 (379)
T PF06025_consen 153 IDAFLDAITAKGILPSSEVLTSLPNVLSAICL-NNRGLEKVKSSNPLDKLFEIFTSP 208 (379)
T ss_pred hHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc-CHHHHHHHHhcChHHHHHHHhCCH
Confidence 999999988 4 345666666677888876 445556788899999999999876
No 188
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=96.19 E-value=0.25 Score=48.20 Aligned_cols=147 Identities=14% Similarity=0.205 Sum_probs=100.6
Q ss_pred ChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHH-HHHhccCChHHHHH
Q 009636 202 GLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWA-LSYLSDGTNDKIQA 280 (530)
Q Consensus 202 ~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~-l~~l~~~~~~~~~~ 280 (530)
++..+++.+.++.+...+..|+..|..+|+..+..-+....-.+..+++.-.+.++++...|..+ +.-++...+..
T Consensus 330 iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~--- 406 (516)
T KOG2956|consen 330 ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ--- 406 (516)
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh---
Confidence 45667777856688999999999999999998766655555566666666656655554444333 33344444322
Q ss_pred HHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009636 281 VIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (530)
Q Consensus 281 ~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 357 (530)
.+..+..++...+......++.++..++..-....-..+-..+.|.+++-..+. +..||+.|.++|..+..
T Consensus 407 -----~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~-SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 407 -----CIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDST-SSTVRKTAVFCLVAMVN 477 (516)
T ss_pred -----HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCc-hHHhhhhHHHhHHHHHH
Confidence 233455555567777778888888888865433222223457899999999998 99999999999988864
No 189
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.19 E-value=1.7 Score=46.67 Aligned_cols=206 Identities=15% Similarity=0.177 Sum_probs=124.5
Q ss_pred hCCChHHHHHhhCC-----CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc---CCCc----hhHHHHHHH
Q 009636 157 DHGAVPIFVKLLYS-----PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN---GQPK----LSMLRNATW 224 (530)
Q Consensus 157 ~~g~i~~L~~ll~~-----~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~---~~~~----~~~~~~a~~ 224 (530)
+.|++..++.++.+ ....+....+..|...+.- +.+|+.+++.++++.|+..+. .... ..+.+..+.
T Consensus 115 ~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~ 193 (802)
T PF13764_consen 115 ECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLE 193 (802)
T ss_pred cCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHH
Confidence 46788888888865 2334555556666555444 568999999999999998884 2222 556666665
Q ss_pred HhhhhccCCCCCCh---------h----hhhchHHHHHHhhcCC----ChhHHHHHHHHHHHhccCChHHHHHHHHhCcH
Q 009636 225 TLSNFCRGKPQPPF---------D----QVSPALPALAHLIHSN----DDEVLTDACWALSYLSDGTNDKIQAVIEAGVF 287 (530)
Q Consensus 225 ~L~~L~~~~~~~~~---------~----~~~~~l~~L~~ll~~~----d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l 287 (530)
++-.+......... . ....-+..++..+.+. ++.+....++.|.+|+.+.++..+.+++.
T Consensus 194 IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--- 270 (802)
T PF13764_consen 194 IIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--- 270 (802)
T ss_pred HHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH---
Confidence 55555443211100 0 1233356666666543 68899999999999999998887766652
Q ss_pred HHHHHhhCCC-----CchhHHHHHHHHhHhhcCC------chhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 009636 288 PRLAEFLMHP-----SPSVLIPALRTVGNIVTGD------DMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT 356 (530)
Q Consensus 288 ~~L~~lL~~~-----~~~~~~~al~~L~nl~~~~------~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~ 356 (530)
+-+.++-+ ...--...+.+++.++.+- ....+.+++.|++...+.+|... -|..+
T Consensus 271 --F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~-~P~~~----------- 336 (802)
T PF13764_consen 271 --FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKH-FPSLK----------- 336 (802)
T ss_pred --HHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHh-Ccccc-----------
Confidence 22222211 1111123466666666543 24567788899999888888766 44331
Q ss_pred cCCHHHHHHHHHhCcHHHHHHHHh
Q 009636 357 AGNREQIQAVIEANIIGPLVALLE 380 (530)
Q Consensus 357 ~~~~~~~~~l~~~~~i~~L~~ll~ 380 (530)
..+.+.....+....+|..+.+|.
T Consensus 337 ~~~s~eWk~~l~~psLp~iL~lL~ 360 (802)
T PF13764_consen 337 NTDSPEWKEFLSRPSLPYILRLLR 360 (802)
T ss_pred cCCCHHHHHHhcCCcHHHHHHHHH
Confidence 112333444555566666666654
No 190
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.15 E-value=0.41 Score=48.94 Aligned_cols=176 Identities=18% Similarity=0.147 Sum_probs=121.0
Q ss_pred HhhcCCChHHHHHHHHHHH--HhhcCCCCCcHHHHHHcCCHHHHHHhhcCC---CCHHHHHHHHHHHHHHhcCChhhHHH
Q 009636 80 AGVWSNDSGVQYECTTQFR--KLLSIERSPPIEEVIRSGVVPRFVEFLLRE---DYPQLQFEAAWALTNIASGTSEHTKV 154 (530)
Q Consensus 80 ~~l~s~~~~~~~~a~~~l~--~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~---~~~~i~~~a~~~L~~l~~~~~~~~~~ 154 (530)
..+...+++....|...++ .++-++ .-+-+..-|.+.+...++ +++.++..|.-+|..+-.-+.+.+.
T Consensus 860 ~~IggtsEddf~da~~fikE~ElLyGe------ksvLs~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~- 932 (1128)
T COG5098 860 SRIGGTSEDDFVDAFFFIKEKELLYGE------KSVLSNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCS- 932 (1128)
T ss_pred hhccCCCHHHHHHHHHHHHHHHHhhch------hHHHhhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHH-
Confidence 3445555555556666555 233331 112234456666666552 2499999999999988775555443
Q ss_pred HHhCCChHHHHHhhC-CCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC
Q 009636 155 VIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (530)
Q Consensus 155 ~~~~g~i~~L~~ll~-~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~ 233 (530)
..+|.|+..+. +++|.+|..|+-.++.++..-....+. ....|.+-| .+.+..+++.|+.++..|.-..
T Consensus 933 ----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de-----~t~yLyrrL-~De~~~V~rtclmti~fLilag 1002 (1128)
T COG5098 933 ----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADE-----HTHYLYRRL-GDEDADVRRTCLMTIHFLILAG 1002 (1128)
T ss_pred ----HHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHH-----HHHHHHHHh-cchhhHHHHHHHHHHHHHHHcc
Confidence 34799999997 689999999999999887443222222 345677777 7788999999999999987653
Q ss_pred CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChH
Q 009636 234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTND 276 (530)
Q Consensus 234 ~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~ 276 (530)
...+.|-++.+..+|.++|.++..-|=..+..++..+..
T Consensus 1003 ----q~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~KdNt 1041 (1128)
T COG5098 1003 ----QLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKDNT 1041 (1128)
T ss_pred ----ceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcccc
Confidence 234578889999999999998877777777777765443
No 191
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.14 E-value=0.49 Score=46.51 Aligned_cols=267 Identities=15% Similarity=0.125 Sum_probs=141.0
Q ss_pred CChHHHHHhh----CCCCHHHHHHHHHHHHhhhCCCch-hhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC
Q 009636 159 GAVPIFVKLL----YSPSDDVREQAVWALGNIAGDSPR-CRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (530)
Q Consensus 159 g~i~~L~~ll----~~~~~~i~~~a~~~L~nl~~~~~~-~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~ 233 (530)
|.+..++..+ .+++..++..|+..|+|.+...|. ++.. ..-.+..++.-|.+..+.++...++.+|..+....
T Consensus 254 ~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th--~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~ 331 (533)
T KOG2032|consen 254 GLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTH--KTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKA 331 (533)
T ss_pred ccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHh--HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh
Confidence 5554444444 346778999999999999988553 2222 22245566666646668899999998888877654
Q ss_pred CCCCh-hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHH----HHHhCcHHHHHHhhCCCCchhHHHHHHH
Q 009636 234 PQPPF-DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQA----VIEAGVFPRLAEFLMHPSPSVLIPALRT 308 (530)
Q Consensus 234 ~~~~~-~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~----~~~~~~l~~L~~lL~~~~~~~~~~al~~ 308 (530)
..... ...-.+.-.+..++.+.+++.+..+...++.++.......+. .+..+ ...++-.+.+.++.+ ..||+.
T Consensus 332 ~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~-~~~lllhl~d~~p~v-a~ACr~ 409 (533)
T KOG2032|consen 332 SNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKR-LAPLLLHLQDPNPYV-ARACRS 409 (533)
T ss_pred hhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhc-cccceeeeCCCChHH-HHHHHH
Confidence 33222 222334445677888899999999988888876322111111 12212 233444455566543 456666
Q ss_pred HhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHH-HHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHH
Q 009636 309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK-EACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIK 387 (530)
Q Consensus 309 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~-~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 387 (530)
....+.-+- ..+.+ .++++.. + ...-+..+. ..-|+ ..+....++....+.. ....++++.=+.++
T Consensus 410 ~~~~c~p~l-~rke~--~~~~q~~---l-d~~~~~~q~Fyn~~c-~~L~~i~~d~l~~~~t-----~~~~~f~sswe~vr 476 (533)
T KOG2032|consen 410 ELRTCYPNL-VRKEL--YHLFQES---L-DTDMARFQAFYNQWC-IQLNHIHPDILMLLLT-----EDQHIFSSSWEQVR 476 (533)
T ss_pred HHHhcCchh-HHHHH--HHHHhhh---h-HHhHHHHHHHHHHHH-HHHhhhCHHHHHHHHH-----hchhheecchHHHH
Confidence 555553211 11111 1122211 1 110111111 11121 1122222332222221 22223333333555
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHH
Q 009636 388 KEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILK 442 (530)
Q Consensus 388 ~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~ 442 (530)
..|...-.++..+-.+..+.+.--.-+...+..+...+-++++..+..++..++.
T Consensus 477 ~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 477 EAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 5555555555554444444443333456677778888899999999999887764
No 192
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=95.97 E-value=0.28 Score=44.76 Aligned_cols=103 Identities=20% Similarity=0.249 Sum_probs=79.4
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccC-CCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhh
Q 009636 387 KKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV-CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDA 465 (530)
Q Consensus 387 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~-~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~ 465 (530)
...|+.+|.-++.- .+.....+-+...+..|+++|. ...+.+...++.+|..++-..+.+ ...|++.
T Consensus 108 i~~aL~vLQGl~LL-Hp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N-----------~r~FE~~ 175 (257)
T PF08045_consen 108 IALALRVLQGLCLL-HPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPEN-----------QRDFEEL 175 (257)
T ss_pred HHHHHHHHHHHHHc-CchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHH-----------HHHHHHh
Confidence 44455666655554 4566677778899999999995 567889999999999998777652 6689999
Q ss_pred ccHHHHHHHhc--CCCHHHHHHHHHHHHHhCCCCCCCC
Q 009636 466 EGLEKIESLQT--HDNAEIYEKSVKLLETYWLDDEDET 501 (530)
Q Consensus 466 ~~~~~l~~l~~--~~~~~v~~~a~~il~~~~~~~~~~~ 501 (530)
+|+..+..+.. +.+.+++-++...+--|...+....
T Consensus 176 ~Gl~~v~~llk~~~~~~~~r~K~~EFL~fyl~~E~~~~ 213 (257)
T PF08045_consen 176 NGLSTVCSLLKSKSTDRELRLKCIEFLYFYLMPETPSI 213 (257)
T ss_pred CCHHHHHHHHccccccHHHhHHHHHHHHHHHcccCCCC
Confidence 99999999854 4677888899999988887665543
No 193
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=95.95 E-value=0.39 Score=47.04 Aligned_cols=275 Identities=17% Similarity=0.143 Sum_probs=143.5
Q ss_pred hHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhh-hhccCCCCCCh
Q 009636 161 VPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS-NFCRGKPQPPF 238 (530)
Q Consensus 161 i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~-~L~~~~~~~~~ 238 (530)
+.+++.-+.+ .+..+|..++--|+.-+.+. .++..+...|....+++.+....+..+...++.++. -++++......
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~-~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l 101 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCADP-QFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL 101 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCCH-HHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence 4566666653 45678888888888887755 489999999999999999965555535555544444 44444444444
Q ss_pred hhhhchHHHHHHhhcCC-ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhC---------CCCchhHHHHHHH
Q 009636 239 DQVSPALPALAHLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM---------HPSPSVLIPALRT 308 (530)
Q Consensus 239 ~~~~~~l~~L~~ll~~~-d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~---------~~~~~~~~~al~~ 308 (530)
......+..++.++... ...+..... . .......... .+.+..+...+. +....-+..|+.+
T Consensus 102 ~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~-~~~~~lsk~~-~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~ 173 (361)
T PF07814_consen 102 LLDRDSLRLLLKLLKVDKSLDVPSDSD------S-SRKKNLSKVQ-QKSRSLCKELLSSGSSWKSPKPPELSPQTLALLA 173 (361)
T ss_pred hhchhHHHHHHHHhccccccccccchh------h-hhhhhhhHHH-HHHHHHHHHHHhccccccccCCcccccccHHHHH
Confidence 44556666667777611 000000000 0 0000001011 112222222221 1223345556666
Q ss_pred HhHhhc--------------CCchhhHHHhhcCchHHHHHhhcC----C------Cc-----hhHHHHHHHHHHHHhcCC
Q 009636 309 VGNIVT--------------GDDMQTQCVIEYQALPCLLNLLSG----N------YK-----KSIKKEACWTVSNITAGN 359 (530)
Q Consensus 309 L~nl~~--------------~~~~~~~~~~~~~~l~~L~~lL~~----~------~~-----~~v~~~a~~~L~nl~~~~ 359 (530)
+-.++. ..+...+.+...|++..++.++.. . .. ...-..+..+|-|.+..+
T Consensus 174 le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~ 253 (361)
T PF07814_consen 174 LESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLS 253 (361)
T ss_pred HHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcC
Confidence 655531 112234455667888888888752 1 01 113345677888877655
Q ss_pred HHHHHHHHH--hCcHHHHHHH----HhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHH-------HhccC---
Q 009636 360 REQIQAVIE--ANIIGPLVAL----LENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPL-------CDLLV--- 423 (530)
Q Consensus 360 ~~~~~~l~~--~~~i~~L~~l----l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L-------~~lL~--- 423 (530)
.++-.+++. .+.++.+... ....-..+...++..+.|++.. +++.+..+...++...+ ..++.
T Consensus 254 ~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~-n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~ 332 (361)
T PF07814_consen 254 EENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNN-NPSACEEFASPKLGQQLGLIVTSFFCVLSLPN 332 (361)
T ss_pred ccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCC-CccchHhhhhhHhccchHHHHHhhcccccccc
Confidence 554444443 2333333322 2222345567889999999886 44444444433322211 11111
Q ss_pred ----CCChHHHHHHHHHHHHHHHhhh
Q 009636 424 ----CPDPRIVTVCLEGLENILKVGE 445 (530)
Q Consensus 424 ----~~~~~~~~~al~~l~~ll~~~~ 445 (530)
...-++...+++++.|+..+.+
T Consensus 333 ~~~~~~~~D~~IL~Lg~LINL~E~s~ 358 (361)
T PF07814_consen 333 YVPEESSFDILILALGLLINLVEHSE 358 (361)
T ss_pred cccccccchHHHHHHHhHHHheeeCc
Confidence 1223466677777777776553
No 194
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=95.94 E-value=0.053 Score=46.08 Aligned_cols=147 Identities=11% Similarity=0.043 Sum_probs=92.5
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhh
Q 009636 116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD 195 (530)
Q Consensus 116 g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~ 195 (530)
.+++.|+++|+.+.+..++.+++++|+.|.+-+|...+.+.... +.-. -...+........... .+... .+
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~--~~~~--~~~~~~~~~~~~l~~~-~~~~~----~e 80 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSL--DSKS--SENSNDESTDISLPMM-GISPS----SE 80 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccC--Cccc--cccccccchhhHHhhc-cCCCc----hH
Confidence 46788899998887699999999999999997776665433211 1000 0111112222222111 11111 12
Q ss_pred hHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 009636 196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLS 271 (530)
Q Consensus 196 ~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~ 271 (530)
...-..++..|++.+.+..-..-...++.++.++..............++|.++..+++.+...++..++-|+.+.
T Consensus 81 e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 81 EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 2233346788888885555555555677777777755555557778999999999999887788888777776653
No 195
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.78 E-value=1.1 Score=47.90 Aligned_cols=196 Identities=20% Similarity=0.221 Sum_probs=118.2
Q ss_pred HHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHH--HHHHhhcCCCh-h
Q 009636 182 ALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALP--ALAHLIHSNDD-E 258 (530)
Q Consensus 182 ~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~--~L~~ll~~~d~-~ 258 (530)
+|+++....+.....+++.+++..+...+......++...++..+.+++...+..........+. .+-.++..-+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 45577777777778889999999999999766788999999999999998764433332222222 33333333333 6
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcC
Q 009636 259 VLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG 338 (530)
Q Consensus 259 v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~ 338 (530)
.-..++..++.+...+++....... +.+......++..+..... ......-+.+.+..++..
T Consensus 574 rsY~~~siLa~ll~~~~~~~~~~~r---------------~~~~~~l~e~i~~~~~~~~---~~~~~~~f~~~~~~il~~ 635 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKTTECVFR---------------NSVNELLVEAISRWLTSEI---RVINDRSFFPRILRILRL 635 (699)
T ss_pred HHHHHHHHHHHHHhCCCcCccccch---------------HHHHHHHHHHhhccCccce---eehhhhhcchhHHHHhcc
Confidence 6666777777666554431111111 1122222222222222111 111122222225566665
Q ss_pred CCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC-chhHHHHHHHHHH
Q 009636 339 NYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA-EFDIKKEAAWAIS 395 (530)
Q Consensus 339 ~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~ 395 (530)
+..+..+..|.|++.+++..+++..+.+.+.++++.+.+.-... ..+++.++...+-
T Consensus 636 s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 693 (699)
T KOG3665|consen 636 SKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIE 693 (699)
T ss_pred cCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhh
Confidence 55778899999999999998888888888889888887754332 4455555554443
No 196
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=3 Score=43.43 Aligned_cols=299 Identities=15% Similarity=0.085 Sum_probs=162.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC--------CCHHHHHHHHHHHHhhhC--CCchhhhhHhhcCChHH
Q 009636 136 EAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS--------PSDDVREQAVWALGNIAG--DSPRCRDLVLSQGGLVP 205 (530)
Q Consensus 136 ~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--------~~~~i~~~a~~~L~nl~~--~~~~~~~~i~~~~~i~~ 205 (530)
+|+.++..+.+..++. .+ .|+++.+...+.. +++.-.+.|++.++++.. ..+....-+++.-+++.
T Consensus 389 aal~fl~~~~sKrke~--Tf--qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~h 464 (970)
T COG5656 389 AALFFLIISKSKRKEE--TF--QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNH 464 (970)
T ss_pred HHHHHHHHHhcccchh--hh--hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHH
Confidence 3555555555432222 12 4889999998832 234556788888888764 22222223333334444
Q ss_pred HHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhC
Q 009636 206 LLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAG 285 (530)
Q Consensus 206 Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~ 285 (530)
++..+ .++..-++..+|..++.+..+ -+.......+......++.+++-.++..|+-++..+..+.. ....+.+.
T Consensus 465 v~P~f-~s~ygfL~Srace~is~~eeD--fkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q--~h~k~sah 539 (970)
T COG5656 465 VIPAF-RSNYGFLKSRACEFISTIEED--FKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQ--SHEKFSAH 539 (970)
T ss_pred hhHhh-cCcccchHHHHHHHHHHHHHh--cccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchh--hhHHHHhh
Confidence 55555 666777888999999999444 33333445566677778888888888888888888776542 23334434
Q ss_pred c---HHHHHHhhCCCCchhHHHHHHHH-hHhhcCCchhhHHHh---hcCchHHHHHhhcCCCc-----hhHHHHHHHHHH
Q 009636 286 V---FPRLAEFLMHPSPSVLIPALRTV-GNIVTGDDMQTQCVI---EYQALPCLLNLLSGNYK-----KSIKKEACWTVS 353 (530)
Q Consensus 286 ~---l~~L~~lL~~~~~~~~~~al~~L-~nl~~~~~~~~~~~~---~~~~l~~L~~lL~~~~~-----~~v~~~a~~~L~ 353 (530)
+ ++.|+.+-+.-+.+....+...+ +..+..-......+. -..++.....++..+.+ .+-+..|...|.
T Consensus 540 Vp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~ 619 (970)
T COG5656 540 VPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILR 619 (970)
T ss_pred hhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHH
Confidence 4 34444443333333333333222 111111111111111 11223333334433211 123344555555
Q ss_pred HHhc------CCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCCh
Q 009636 354 NITA------GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDP 427 (530)
Q Consensus 354 nl~~------~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~ 427 (530)
.+.+ ..+...+.+. ....|..-=++.+.-.++-.+|+..+-+.+... ..+.. +-=|+.+.+.+++.+..+
T Consensus 620 T~~smiLSlen~p~vLk~le-~slypvi~Filkn~i~dfy~Ea~dildg~tf~s--keI~p-imwgi~Ell~~~l~~~~t 695 (970)
T COG5656 620 TIESMILSLENRPLVLKYLE-VSLYPVISFILKNEISDFYQEALDILDGYTFMS--KEIEP-IMWGIFELLLNLLIDEIT 695 (970)
T ss_pred HHHHHHHhcccchHHHHHHH-HHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHH--HHhhh-hhhHHHHHHHhcccccch
Confidence 4433 2333333332 234455444566666778888888887766521 11111 223678888888887775
Q ss_pred -HHHHHHHHHHHHHHHhhhhh
Q 009636 428 -RIVTVCLEGLENILKVGEAE 447 (530)
Q Consensus 428 -~~~~~al~~l~~ll~~~~~~ 447 (530)
.....+..++.+++.+|.+.
T Consensus 696 ~~y~ee~~~al~nfityG~~e 716 (970)
T COG5656 696 AVYSEEVADALDNFITYGKTE 716 (970)
T ss_pred hhhHHHHHHHHHHHHHhCccc
Confidence 66778888999999988543
No 197
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=95.77 E-value=0.61 Score=45.58 Aligned_cols=174 Identities=11% Similarity=0.129 Sum_probs=104.8
Q ss_pred chhHHHHHHHHhhh-hccCCCCCChhhhhchHHHHHHhhcC-CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHH
Q 009636 215 KLSMLRNATWTLSN-FCRGKPQPPFDQVSPALPALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAE 292 (530)
Q Consensus 215 ~~~~~~~a~~~L~~-L~~~~~~~~~~~~~~~l~~L~~ll~~-~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ 292 (530)
..+-+..|+.-|.. +|.+.-..-......++..++..+.. .+..+..-+++.|..++.+......--.+ -.+..+++
T Consensus 300 ~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE-~ai~K~Le 378 (516)
T KOG2956|consen 300 RASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTE-IAICKVLE 378 (516)
T ss_pred chhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHH-HHHHHHHH
Confidence 33444455553333 33332222222345666777777776 67888889999999999876654321112 23455555
Q ss_pred hhCCCCchhHHHHHHH-HhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHhC
Q 009636 293 FLMHPSPSVLIPALRT-VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQAVIEAN 370 (530)
Q Consensus 293 lL~~~~~~~~~~al~~-L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~ 370 (530)
.-.+..+.+...|... +.-++...+... +..+..++... +...-..+...+..++.. +.+....++ ..
T Consensus 379 aa~ds~~~v~~~Aeed~~~~las~~P~~~--------I~~i~~~Ilt~-D~~~~~~~iKm~Tkl~e~l~~EeL~~ll-~d 448 (516)
T KOG2956|consen 379 AAKDSQDEVMRVAEEDCLTTLASHLPLQC--------IVNISPLILTA-DEPRAVAVIKMLTKLFERLSAEELLNLL-PD 448 (516)
T ss_pred HHhCCchhHHHHHHHHHHHHHHhhCchhH--------HHHHhhHHhcC-cchHHHHHHHHHHHHHhhcCHHHHHHhh-hh
Confidence 5555555555555444 333444444332 33444455445 555555666677777763 344333333 36
Q ss_pred cHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009636 371 IIGPLVALLENAEFDIKKEAAWAISNATS 399 (530)
Q Consensus 371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 399 (530)
+.|.+++..++.+..||+.|+++|..+..
T Consensus 449 iaP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 449 IAPCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred hhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 89999999999999999999999998865
No 198
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=95.72 E-value=0.83 Score=41.50 Aligned_cols=194 Identities=16% Similarity=0.091 Sum_probs=116.3
Q ss_pred CchhHHHHHHHHhHhhcCCchhhHHHhh-cCchHHHHHhh-------cCCC-chhHHHHHHHHHHH--HhcCCHHHHHHH
Q 009636 298 SPSVLIPALRTVGNIVTGDDMQTQCVIE-YQALPCLLNLL-------SGNY-KKSIKKEACWTVSN--ITAGNREQIQAV 366 (530)
Q Consensus 298 ~~~~~~~al~~L~nl~~~~~~~~~~~~~-~~~l~~L~~lL-------~~~~-~~~v~~~a~~~L~n--l~~~~~~~~~~l 366 (530)
+++.++.|+.-|+.--...+...-.+.. .|.+..|+.=+ ..+. .+..-...|++|+- ..+..++.+..+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 4556777776666655444444333332 35444443222 2220 12233344444433 223457888899
Q ss_pred HHhCcHHHHHHHHhcC-----chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHH
Q 009636 367 IEANIIGPLVALLENA-----EFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENIL 441 (530)
Q Consensus 367 ~~~~~i~~L~~ll~~~-----~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll 441 (530)
+++++.-.|...++.. -..+|..++.+++.+....+++.+.++.+..+++..++.++.++.-....|.-.+.+++
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL 167 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL 167 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 9999877777777554 25689999999999999999999999999999999999999888888888999999999
Q ss_pred HhhhhhhhcCCCCchhhHHHhhhhccHHH-HHHHhcCCCHHHHHHHHHHHHHhCC
Q 009636 442 KVGEAEKNLGNTDVNVFTQMIDDAEGLEK-IESLQTHDNAEIYEKSVKLLETYWL 495 (530)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-l~~l~~~~~~~v~~~a~~il~~~~~ 495 (530)
........-+.. .+.|. .=...+.. +..+...+++.+-+-......+..+
T Consensus 168 ~dd~GL~yiC~t-~eRf~---av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsd 218 (262)
T PF04078_consen 168 LDDVGLNYICQT-AERFF---AVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSD 218 (262)
T ss_dssp HSHHHHHHHTSS-HHHHH---HHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTT
T ss_pred cchhHHHHHhcC-HHHHH---HHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcc
Confidence 776654433221 11111 11223333 3456777888776655555555443
No 199
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.72 E-value=0.018 Score=33.53 Aligned_cols=30 Identities=17% Similarity=0.305 Sum_probs=26.2
Q ss_pred cHHHHHHHHhcCchhHHHHHHHHHHHhhcC
Q 009636 371 IIGPLVALLENAEFDIKKEAAWAISNATSG 400 (530)
Q Consensus 371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 400 (530)
++|.+++++.+++++||..|+++|+.++..
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 478999999999999999999999998753
No 200
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=95.69 E-value=0.74 Score=41.06 Aligned_cols=141 Identities=10% Similarity=0.138 Sum_probs=101.1
Q ss_pred hHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCC----CchhHHHHHHHHHHHHhc-CCHHHHHHHHHhCcHHHH
Q 009636 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN----YKKSIKKEACWTVSNITA-GNREQIQAVIEANIIGPL 375 (530)
Q Consensus 301 ~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~----~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L 375 (530)
-...|+..+..+++ .++.+..++++.+--.+..+|... ..+-+|-.+..+|+.+.. ++.+.+..+...+++|.+
T Consensus 95 RVcnaL~LlQcvAS-HpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlC 173 (293)
T KOG3036|consen 95 RVCNALALLQCVAS-HPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLC 173 (293)
T ss_pred hHHHHHHHHHHHhc-CcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHH
Confidence 34556666666665 444555677777776777777543 245688999999999988 677888889999999999
Q ss_pred HHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHc--------CChH-HHHhccCCCChHHHHHHHHHHHHHHHhh
Q 009636 376 VALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQ--------GCIK-PLCDLLVCPDPRIVTVCLEGLENILKVG 444 (530)
Q Consensus 376 ~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~--------~~i~-~L~~lL~~~~~~~~~~al~~l~~ll~~~ 444 (530)
++.+..++...+.-|...+..+.... ....|+.+. -++. .+..+.+.+++.+...++.+..++....
T Consensus 174 Lrime~GSelSKtvA~fIlqKIlldD--~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp 249 (293)
T KOG3036|consen 174 LRIMESGSELSKTVATFILQKILLDD--VGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP 249 (293)
T ss_pred HHHHhcccHHHHHHHHHHHHHHhhcc--ccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence 99999999999999999999988743 233332211 1122 2344556788888888888888776543
No 201
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=95.65 E-value=0.11 Score=37.07 Aligned_cols=66 Identities=26% Similarity=0.380 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC-chhHHHHHHHHHHHhhcCCCHHHHHHHHHcC
Q 009636 345 KKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA-EFDIKKEAAWAISNATSGGTHEQIKFLVIQG 413 (530)
Q Consensus 345 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~ 413 (530)
.+.|.|+++++++. +..+..+.+.++++.++++.... ...+|-.|.++|+-++. +.+..+.|-+.|
T Consensus 4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~--T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS--TEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC--CHHHHHHHHHcC
Confidence 57899999999774 56666677789999999998755 68899999999999988 557766665554
No 202
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=95.57 E-value=0.13 Score=45.26 Aligned_cols=111 Identities=16% Similarity=0.165 Sum_probs=79.4
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCC--------CCHHHHHHHHHHHHHHh
Q 009636 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE--------DYPQLQFEAAWALTNIA 145 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~--------~~~~i~~~a~~~L~~l~ 145 (530)
....+++.+.+..... ..+..|+..+......-++.+++.|++..|+++|..- .+..++.+++.||..+.
T Consensus 67 ~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~ 144 (187)
T PF06371_consen 67 SPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM 144 (187)
T ss_dssp HHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence 4466777887655433 5566666666553233467788888899999887631 23578999999999999
Q ss_pred cCChhhHHHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHhhh
Q 009636 146 SGTSEHTKVVID-HGAVPIFVKLLYSPSDDVREQAVWALGNIA 187 (530)
Q Consensus 146 ~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~ 187 (530)
. +......++. .+++..|+..|.+++..++..++.+|+.+|
T Consensus 145 n-~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 145 N-TKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp S-SHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred c-cHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 8 5566666665 688999999999999999999999999886
No 203
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.54 E-value=1.4 Score=45.53 Aligned_cols=110 Identities=20% Similarity=0.200 Sum_probs=81.4
Q ss_pred hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCch
Q 009636 239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM 318 (530)
Q Consensus 239 ~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~ 318 (530)
....+.+..+++...+++..|+..+|..|..+...... +...+-.++...+..-+.+..+.++..|+.+|+.+=.....
T Consensus 81 DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~e-idd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d 159 (892)
T KOG2025|consen 81 DLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAE-IDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD 159 (892)
T ss_pred hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccc-cCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC
Confidence 35677788888888899999999999999988864322 22233347778888888899999999999999998632211
Q ss_pred hhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 009636 319 QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN 354 (530)
Q Consensus 319 ~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n 354 (530)
. +..+...+..+++.+.+++||+.|...|.+
T Consensus 160 e-----e~~v~n~l~~liqnDpS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 160 E-----ECPVVNLLKDLIQNDPSDEVRRAALSNISV 190 (892)
T ss_pred C-----cccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence 1 234677788888887789999987655543
No 204
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=95.53 E-value=0.3 Score=41.42 Aligned_cols=136 Identities=20% Similarity=0.178 Sum_probs=94.0
Q ss_pred CCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHh-hcCchHHH
Q 009636 254 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVI-EYQALPCL 332 (530)
Q Consensus 254 ~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~-~~~~l~~L 332 (530)
...++++..+.-++..+.+. ...-....+-+.+-..+...+.+-...++.++..+..+.++....++ ..|+++.+
T Consensus 16 ~~~~~~r~~a~v~l~k~l~~----~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l 91 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLDA----AREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESL 91 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHH
Confidence 35677888888888777421 12222223344555566666666788899999999888887766666 67999999
Q ss_pred HHhhc--CCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHh-cCchh-HHHHHHHHHHH
Q 009636 333 LNLLS--GNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLE-NAEFD-IKKEAAWAISN 396 (530)
Q Consensus 333 ~~lL~--~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~-v~~~a~~aL~n 396 (530)
..++. .. +..++..++.+|+--|.. +.++..+...+++.|-++++ +.+.. +|..|+-+|+.
T Consensus 92 ~~~~~~~~~-~~~~~~~~lell~aAc~d--~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 92 LPLASRKSK-DRKVQKAALELLSAACID--KSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHHHH-CTS--HHHHHHHHHHHHHHTTS--HHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHHhcccC-CHHHHHHHHHHHHHHHcc--HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 99998 55 777888888877765543 44555555678999999995 44555 88888888765
No 205
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.48 E-value=2.4 Score=45.28 Aligned_cols=174 Identities=14% Similarity=0.206 Sum_probs=110.4
Q ss_pred HHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCH--HHHHHHHHhCcHHHHHHHHhcCc-h
Q 009636 308 TVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR--EQIQAVIEANIIGPLVALLENAE-F 384 (530)
Q Consensus 308 ~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~--~~~~~l~~~~~i~~L~~ll~~~~-~ 384 (530)
++.++...++.....+++.+++..+...+..-....++..+...++|++...+ +.......... ..+..++...+ .
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~-~~f~~~~~~w~~~ 572 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDF-SVFKVLLNKWDSI 572 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH-HHHHHHHhhcchh
Confidence 78888888888999999999999999999866577899999999999987322 11111111111 12222333333 3
Q ss_pred hHHHHHHHHHHHhhcCCCH--------HHHHHH--------------HHcCChHH-HHhccC-CCChHHHHHHHHHHHHH
Q 009636 385 DIKKEAAWAISNATSGGTH--------EQIKFL--------------VIQGCIKP-LCDLLV-CPDPRIVTVCLEGLENI 440 (530)
Q Consensus 385 ~v~~~a~~aL~nl~~~~~~--------~~~~~l--------------~~~~~i~~-L~~lL~-~~~~~~~~~al~~l~~l 440 (530)
+.-..|+..|..+...++. .....+ .....+.+ +..++. +..+..+..|++++.++
T Consensus 573 ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~ 652 (699)
T KOG3665|consen 573 ERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNV 652 (699)
T ss_pred hHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHH
Confidence 6777777777777765310 000111 11111222 434443 44566778888888888
Q ss_pred HHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhc-CCCHHHHHHHHHHHHHh
Q 009636 441 LKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQT-HDNAEIYEKSVKLLETY 493 (530)
Q Consensus 441 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~-~~~~~v~~~a~~il~~~ 493 (530)
+...+. ++..+.+.|++..+.++.. ....++.+.+..+++..
T Consensus 653 ~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 695 (699)
T KOG3665|consen 653 LEQNKE-----------YCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESC 695 (699)
T ss_pred HHcChh-----------hhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhcc
Confidence 876544 5777888999998888732 23666777777777654
No 206
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.48 E-value=4 Score=42.88 Aligned_cols=279 Identities=12% Similarity=0.101 Sum_probs=139.9
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHh--CCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCch-hh
Q 009636 119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVID--HGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPR-CR 194 (530)
Q Consensus 119 ~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~-~~ 194 (530)
..+++++++.++--++..+++++.-...+-.-..+.+.. ......+.+++.. ..-+.+...+.+|+.+.....+ .+
T Consensus 529 ~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~ 608 (978)
T KOG1993|consen 529 CAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIA 608 (978)
T ss_pred HHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhh
Confidence 345666766644666777777777666532222222211 2233344444443 3445566677777776543222 11
Q ss_pred hhHhhcCChHHHHHhh-cCC-CchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCCh---hHHHHHHH----
Q 009636 195 DLVLSQGGLVPLLAQL-NGQ-PKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDD---EVLTDACW---- 265 (530)
Q Consensus 195 ~~i~~~~~i~~Ll~ll-~~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~---~v~~~a~~---- 265 (530)
.... .+-.++..+ ..+ ..+-++...+.+|.++...-.........-++|.+-....-+.+ -..+++..
T Consensus 609 P~~~---~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~ 685 (978)
T KOG1993|consen 609 PYAS---TIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLT 685 (978)
T ss_pred HHHH---HHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHH
Confidence 1111 111222222 123 34445556677888888775544444444445544443332222 23333322
Q ss_pred HHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHH
Q 009636 266 ALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIK 345 (530)
Q Consensus 266 ~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~ 345 (530)
+|.|...-.++ +. +++|.++.++......+ ..++.++....--.....-.-...|+...+..++.+- ..+-.
T Consensus 686 ~L~n~~~l~p~----ll--~L~p~l~~~iE~ste~L-~t~l~Ii~sYilLd~~~fl~~y~~~i~k~~~~~l~dv-r~egl 757 (978)
T KOG1993|consen 686 TLMNSQKLTPE----LL--LLFPHLLYIIEQSTENL-PTVLMIISSYILLDNTVFLNDYAFGIFKKLNDLLDDV-RNEGL 757 (978)
T ss_pred HHhcccccCHH----HH--HHHHHHHHHHHhhhhhH-HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHh-hHHHH
Confidence 23333222222 22 56777777776554332 2333343332211111111122347777787777655 44444
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhc--CchhHHHHHHHHHHHhhcCCCHHHHHHHH
Q 009636 346 KEACWTVSNITAGNREQIQAVIEANIIGPLVALLEN--AEFDIKKEAAWAISNATSGGTHEQIKFLV 410 (530)
Q Consensus 346 ~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~a~~aL~nl~~~~~~~~~~~l~ 410 (530)
...+.++.++...++ ........++++.+...+-. ..|.+-..-+.+++.++.. +++....++
T Consensus 758 ~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~-n~~~~msvl 822 (978)
T KOG1993|consen 758 QAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLR-NPSLFMSVL 822 (978)
T ss_pred HHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhc-ChHHHHHHH
Confidence 555666666655544 45555667888888776533 3577888888888888776 444444433
No 207
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=95.41 E-value=0.56 Score=48.29 Aligned_cols=258 Identities=13% Similarity=0.128 Sum_probs=164.1
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCChhhHH
Q 009636 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTK 153 (530)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~-~~~i~~~a~~~L~~l~~~~~~~~~ 153 (530)
+-.+++.++..+.+.+..-...|.+.+.. --+.++...++|.|+..+.-++ ...+. ..+.-++..... .+
T Consensus 256 ~~~fLeel~lks~~eK~~Ff~~L~~~l~~----~pe~i~~~kvlp~Ll~~~~~g~a~~~~l-tpl~k~~k~ld~-~e--- 326 (690)
T KOG1243|consen 256 TLLFLEELRLKSVEEKQKFFSGLIDRLDN----FPEEIIASKVLPILLAALEFGDAASDFL-TPLFKLGKDLDE-EE--- 326 (690)
T ss_pred HHHHHHhcccCcHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHhhccccchhhh-hHHHHhhhhccc-cc---
Confidence 34555566666776666666666654322 2334555667788777766554 11222 122222222221 22
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC
Q 009636 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (530)
Q Consensus 154 ~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~ 233 (530)
+..+++|.|+++++.++..+|-.-+.-+-+.... ..+.+++..+++.+..-+ .+++..++...+.++..|+..-
T Consensus 327 --yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~---Lt~~~~~d~I~phv~~G~-~DTn~~Lre~Tlksm~~La~kL 400 (690)
T KOG1243|consen 327 --YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH---LTKQILNDQIFPHVALGF-LDTNATLREQTLKSMAVLAPKL 400 (690)
T ss_pred --cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhh---cCHHhhcchhHHHHHhhc-ccCCHHHHHHHHHHHHHHHhhh
Confidence 5568899999999999998887666555555433 334556677888888877 7889999999999988887653
Q ss_pred CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCc-HHHHHHhhCCCCchhHHHHHHHHhHh
Q 009636 234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV-FPRLAEFLMHPSPSVLIPALRTVGNI 312 (530)
Q Consensus 234 ~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~-l~~L~~lL~~~~~~~~~~al~~L~nl 312 (530)
... ......+..+..+-..++..++.+..-|++.++....... ..++ ...+...+.++-...+..+++.+...
T Consensus 401 ~~~--~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~----R~~vL~~aftralkdpf~paR~a~v~~l~at 474 (690)
T KOG1243|consen 401 SKR--NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV----RKRVLASAFTRALKDPFVPARKAGVLALAAT 474 (690)
T ss_pred chh--hhcHHHHHHHHhhCccccCcccccceeeecccccccchhh----hccccchhhhhhhcCCCCCchhhhhHHHhhc
Confidence 221 2334556666666556678888888888888876533211 2233 33444456666677788888887766
Q ss_pred hcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009636 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (530)
Q Consensus 313 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 357 (530)
....+. .-+...++|.+..+..+. +..+|..|-.++..+-.
T Consensus 475 ~~~~~~---~~va~kIlp~l~pl~vd~-e~~vr~~a~~~i~~fl~ 515 (690)
T KOG1243|consen 475 QEYFDQ---SEVANKILPSLVPLTVDP-EKTVRDTAEKAIRQFLE 515 (690)
T ss_pred ccccch---hhhhhhccccccccccCc-ccchhhHHHHHHHHHHh
Confidence 554332 234567888888888888 88888888777665543
No 208
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.40 E-value=0.023 Score=33.06 Aligned_cols=29 Identities=28% Similarity=0.429 Sum_probs=25.6
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 009636 117 VVPRFVEFLLREDYPQLQFEAAWALTNIAS 146 (530)
Q Consensus 117 ~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~ 146 (530)
++|.+++++++++ +.+|..|+++|+.++.
T Consensus 1 llp~l~~~l~D~~-~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPS-PEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SS-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCC-HHHHHHHHHHHHHHHh
Confidence 3789999999998 9999999999999875
No 209
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=95.39 E-value=0.39 Score=46.96 Aligned_cols=140 Identities=17% Similarity=0.160 Sum_probs=83.0
Q ss_pred HHHHHHhhcCCC-hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhC------CCCchhHHHHHHHHhHhhcCCc
Q 009636 245 LPALAHLIHSND-DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM------HPSPSVLIPALRTVGNIVTGDD 317 (530)
Q Consensus 245 l~~L~~ll~~~d-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~------~~~~~~~~~al~~L~nl~~~~~ 317 (530)
.+.+-.-+...| ..-+..|+..+..++.........++. ..+..++. ..+|.-+..|+..++.++....
T Consensus 212 ~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~----~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~ 287 (370)
T PF08506_consen 212 EEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILM----QYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGS 287 (370)
T ss_dssp HHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS-
T ss_pred HHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhc
Confidence 344444444333 445667777888887553332222222 22333332 3577888999999999987543
Q ss_pred h------------hhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchh
Q 009636 318 M------------QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFD 385 (530)
Q Consensus 318 ~------------~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~ 385 (530)
. ....+....++|-|. -.....|-++..|++.+..+-..-+. ..+ .+++|.++..|.+++.-
T Consensus 288 t~~~Gvt~~~~~v~v~~Ff~~~v~peL~--~~~~~~piLka~aik~~~~Fr~~l~~--~~l--~~~~~~l~~~L~~~~~v 361 (370)
T PF08506_consen 288 TTKSGVTQTNELVDVVDFFSQHVLPELQ--PDVNSHPILKADAIKFLYTFRNQLPK--EQL--LQIFPLLVNHLQSSSYV 361 (370)
T ss_dssp -BTTB-S-B-TTS-HHHHHHHHTCHHHH---SS-S-HHHHHHHHHHHHHHGGGS-H--HHH--HHHHHHHHHHTTSS-HH
T ss_pred cccCCcccccccccHHHHHHHHhHHHhc--ccCCCCcchHHHHHHHHHHHHhhCCH--HHH--HHHHHHHHHHhCCCCcc
Confidence 2 123334455666555 12222778999999999999764332 122 24899999999999999
Q ss_pred HHHHHHHHH
Q 009636 386 IKKEAAWAI 394 (530)
Q Consensus 386 v~~~a~~aL 394 (530)
|...|+.++
T Consensus 362 v~tyAA~~i 370 (370)
T PF08506_consen 362 VHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHH
T ss_pred hhhhhhhhC
Confidence 999998875
No 210
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=95.39 E-value=0.49 Score=50.75 Aligned_cols=187 Identities=14% Similarity=0.062 Sum_probs=132.5
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhh
Q 009636 162 PIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQV 241 (530)
Q Consensus 162 ~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~ 241 (530)
+.+..-+.+.++.-+..++..+..+..... ........+.+..+++....+.+..+...++.+|..++..-........
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~ 334 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA 334 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH
Confidence 444455556777788888888887776554 1122223445666677766788899999999999999988755566667
Q ss_pred hchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCch-hh
Q 009636 242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM-QT 320 (530)
Q Consensus 242 ~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~-~~ 320 (530)
..+.|.+++.+......++..+..++-.++.... -....+.+...+.+.++.++..+...+.......+. ..
T Consensus 335 ~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~ 407 (815)
T KOG1820|consen 335 KNVFPSLLDRLKEKKSELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTV 407 (815)
T ss_pred HhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCc
Confidence 8888999998888877777776666654443211 114567788899999999999988888877765542 11
Q ss_pred HHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009636 321 QCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (530)
Q Consensus 321 ~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 357 (530)
..-.-.++++.++....+. +.+||..|..+++-+..
T Consensus 408 ~~~t~~~l~p~~~~~~~D~-~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 408 EKETVKTLVPHLIKHINDT-DKDVRKAALEAVAAVMK 443 (815)
T ss_pred chhhHHHHhHHHhhhccCC-cHHHHHHHHHHHHHHHH
Confidence 1112246788888888888 89999999998888765
No 211
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.37 E-value=0.15 Score=50.76 Aligned_cols=151 Identities=22% Similarity=0.313 Sum_probs=101.3
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHh-hCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcC
Q 009636 123 EFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKL-LYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQG 201 (530)
Q Consensus 123 ~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l-l~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~ 201 (530)
+++.+.+ +-+++..+..++.--.++.. .|++..|+.+ .++.+.+++..|+-+|+-+|.+++.
T Consensus 523 ell~d~d-s~lRy~G~fs~alAy~GTgn-------~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~--------- 585 (926)
T COG5116 523 ELLYDKD-SILRYNGVFSLALAYVGTGN-------LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD--------- 585 (926)
T ss_pred HHhcCch-HHhhhccHHHHHHHHhcCCc-------chhHhhhheeecccCchHHHHHHHHheeeeEecCcc---------
Confidence 3444444 66676666555443332222 3667778877 5668899999999999999876653
Q ss_pred ChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHH
Q 009636 202 GLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAV 281 (530)
Q Consensus 202 ~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~ 281 (530)
.+...+++|..+.+..++.....+|.-.|.+... ..++..|-.++.....-|+..++.+++-+.-...+....-
T Consensus 586 ~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~------~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~ 659 (926)
T COG5116 586 LLVGTVELLSESHNFHVRAGVAVALGIACAGTGD------KVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPN 659 (926)
T ss_pred hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc------HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChh
Confidence 5666778887778899999899999888877532 3345566777778888899999988887764332221111
Q ss_pred HHhCcHHHHHHhhCCC
Q 009636 282 IEAGVFPRLAEFLMHP 297 (530)
Q Consensus 282 ~~~~~l~~L~~lL~~~ 297 (530)
+. ++...+.+++.+.
T Consensus 660 v~-~I~k~f~~vI~~K 674 (926)
T COG5116 660 VK-RIIKKFNRVIVDK 674 (926)
T ss_pred HH-HHHHHHHHHHhhh
Confidence 11 5556666666554
No 212
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=95.37 E-value=1.5 Score=43.02 Aligned_cols=274 Identities=17% Similarity=0.136 Sum_probs=139.4
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHH-HhhhCCCchhhh
Q 009636 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWAL-GNIAGDSPRCRD 195 (530)
Q Consensus 118 v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~i~~~a~~~L-~nl~~~~~~~~~ 195 (530)
+..+++=|.+.....+|..++--|+.-+. +++.+..+..+|.+..+++.+.. ++..+...++.++ .-++.+.. .-.
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~-~~~ 100 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL-NMH 100 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc-chh
Confidence 55566666644446889999888888888 79999999999999999999955 3332444443444 44444443 334
Q ss_pred hHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCCh-hhhhchHHHHHHhhc---------CCChhHHHHHHH
Q 009636 196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF-DQVSPALPALAHLIH---------SNDDEVLTDACW 265 (530)
Q Consensus 196 ~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~-~~~~~~l~~L~~ll~---------~~d~~v~~~a~~ 265 (530)
.+...+....+++++.-........... .. ..... ......+..+.+.+. .....-+.-++.
T Consensus 101 l~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~--~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall 172 (361)
T PF07814_consen 101 LLLDRDSLRLLLKLLKVDKSLDVPSDSD------SS--RKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALL 172 (361)
T ss_pred hhhchhHHHHHHHHhccccccccccchh------hh--hhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHH
Confidence 4445555555566663000000000000 00 00000 000111111111110 011112222333
Q ss_pred HHHHhc--------------cCChHHHHHHHHhCcHHHHHHhhCC----C-------C-----chhHHHHHHHHhHhhcC
Q 009636 266 ALSYLS--------------DGTNDKIQAVIEAGVFPRLAEFLMH----P-------S-----PSVLIPALRTVGNIVTG 315 (530)
Q Consensus 266 ~l~~l~--------------~~~~~~~~~~~~~~~l~~L~~lL~~----~-------~-----~~~~~~al~~L~nl~~~ 315 (530)
++-.++ ...+.....+...|+++.++.++.. . . ......++++|-+.+..
T Consensus 173 ~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~ 252 (361)
T PF07814_consen 173 ALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFL 252 (361)
T ss_pred HHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhc
Confidence 332221 1111223345566788888888751 1 1 12455678888888776
Q ss_pred CchhhHHHhh--cCchHHHHHhhcCCC---chhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHH-------h---
Q 009636 316 DDMQTQCVIE--YQALPCLLNLLSGNY---KKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALL-------E--- 380 (530)
Q Consensus 316 ~~~~~~~~~~--~~~l~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll-------~--- 380 (530)
+......++. .+.++.+...+-... ...+...++.++.|++-++++.+..+...++...+..+. .
T Consensus 253 ~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~ 332 (361)
T PF07814_consen 253 SEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPN 332 (361)
T ss_pred CccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhcccccccc
Confidence 6655445443 233333333322211 334457788999999988877766665543332222111 1
Q ss_pred ----cCchhHHHHHHHHHHHhhcCC
Q 009636 381 ----NAEFDIKKEAAWAISNATSGG 401 (530)
Q Consensus 381 ----~~~~~v~~~a~~aL~nl~~~~ 401 (530)
....+...-++.++.|++...
T Consensus 333 ~~~~~~~~D~~IL~Lg~LINL~E~s 357 (361)
T PF07814_consen 333 YVPEESSFDILILALGLLINLVEHS 357 (361)
T ss_pred cccccccchHHHHHHHhHHHheeeC
Confidence 113456677777777777653
No 213
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.28 E-value=0.1 Score=53.08 Aligned_cols=143 Identities=15% Similarity=0.128 Sum_probs=105.1
Q ss_pred cHHHHHHhhCC----CCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH
Q 009636 286 VFPRLAEFLMH----PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE 361 (530)
Q Consensus 286 ~l~~L~~lL~~----~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~ 361 (530)
+.|.+.+...+ +++.++..|..+|..+..-+.... ..-+|.++..+.....|.+|.+|...++.++.....
T Consensus 893 F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc-----~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~ 967 (1128)
T COG5098 893 FKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFC-----SEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNT 967 (1128)
T ss_pred hhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHH-----HHHHHHHHHHHhhCCCcceeccceeeccccceehhh
Confidence 44555555544 578889999888888876544433 245788999998443999999999999988764322
Q ss_pred HHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHH
Q 009636 362 QIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENIL 441 (530)
Q Consensus 362 ~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll 441 (530)
.+. ..-..|.+-|.+.+..||+.+..++.++...+- +.-.|.+..+..+|+++|..+...|-..+..+.
T Consensus 968 ~~d-----e~t~yLyrrL~De~~~V~rtclmti~fLilagq------~KVKGqlg~ma~~L~deda~Isdmar~fft~~a 1036 (1128)
T COG5098 968 TAD-----EHTHYLYRRLGDEDADVRRTCLMTIHFLILAGQ------LKVKGQLGKMALLLTDEDAEISDMARHFFTQIA 1036 (1128)
T ss_pred hhH-----HHHHHHHHHhcchhhHHHHHHHHHHHHHHHccc------eeeccchhhhHhhccCCcchHHHHHHHHHHHHH
Confidence 222 234577888888899999999999999988652 234588889999999999998888777776666
Q ss_pred Hhh
Q 009636 442 KVG 444 (530)
Q Consensus 442 ~~~ 444 (530)
...
T Consensus 1037 ~Kd 1039 (1128)
T COG5098 1037 KKD 1039 (1128)
T ss_pred hcc
Confidence 544
No 214
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=95.11 E-value=3.8 Score=40.42 Aligned_cols=267 Identities=13% Similarity=0.063 Sum_probs=137.0
Q ss_pred CHHHHHHHHHHHHhhhCCCchhhhhHhhcC---ChHHHHHhhc-CCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHH
Q 009636 172 SDDVREQAVWALGNIAGDSPRCRDLVLSQG---GLVPLLAQLN-GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPA 247 (530)
Q Consensus 172 ~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~---~i~~Ll~ll~-~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~ 247 (530)
+..+..+|+.+|+.+..+.. ....+-... ++...+..+. .+.+..+....+|+|+.=-.............++..
T Consensus 59 ~~~L~~qALkll~~~l~~~~-i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~ 137 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPE-IVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAA 137 (372)
T ss_pred chHHHHHHHHHHHHHHccHH-HHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHH
Confidence 67889999999999875543 222221111 2334444442 344677888888887653222211111222223333
Q ss_pred HHHhhc-CCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhc--CCc-hhhH--
Q 009636 248 LAHLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT--GDD-MQTQ-- 321 (530)
Q Consensus 248 L~~ll~-~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~--~~~-~~~~-- 321 (530)
+..+-+ -+...+....+.++.++....+.....-.. ..++.++..+-+....++..|..++..+.. +.. ....
T Consensus 138 l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~-~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~ 216 (372)
T PF12231_consen 138 LHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHAD-IWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSV 216 (372)
T ss_pred HHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHH
Confidence 333332 345678888888998888776543222211 367788887777777777776655544432 111 1111
Q ss_pred -HHhh----cC-----chHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH-HHHHHHHhCcHHHHHHHHhcCchhHHHHH
Q 009636 322 -CVIE----YQ-----ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE-QIQAVIEANIIGPLVALLENAEFDIKKEA 390 (530)
Q Consensus 322 -~~~~----~~-----~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~~~i~~L~~ll~~~~~~v~~~a 390 (530)
..++ .+ +.+.|..++... +.....--.|...-+.-+++. .....+ ...+...-..+.++++.+|..|
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~L~~mi~~~-~~~~~a~~iW~~~i~LL~~~~~~~w~~~-n~wL~v~e~cFn~~d~~~k~~A 294 (372)
T PF12231_consen 217 LEDLQRSLENGKLIQLYCERLKEMIKSK-DEYKLAMQIWSVVILLLGSSRLDSWEHL-NEWLKVPEKCFNSSDPQVKIQA 294 (372)
T ss_pred HHHhccccccccHHHHHHHHHHHHHhCc-CCcchHHHHHHHHHHHhCCchhhccHhH-hHHHHHHHHHhcCCCHHHHHHH
Confidence 1112 12 344466677663 222222223433333223221 101111 2344455556778899999999
Q ss_pred HHHHHHhhcCC--CHHHHHHHHHcCChHHHHhccCC-CCh----HHHHHHHHHHHHHHHh
Q 009636 391 AWAISNATSGG--THEQIKFLVIQGCIKPLCDLLVC-PDP----RIVTVCLEGLENILKV 443 (530)
Q Consensus 391 ~~aL~nl~~~~--~~~~~~~l~~~~~i~~L~~lL~~-~~~----~~~~~al~~l~~ll~~ 443 (530)
..+-..++... +.......+.. +..++..-++. ... .+...++..+++++-+
T Consensus 295 ~~aW~~liy~~~~~~~~~~k~l~l-L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly~ 353 (372)
T PF12231_consen 295 FKAWRRLIYASNPNELTSPKRLKL-LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLYY 353 (372)
T ss_pred HHHHHHHHHHhcCCccccHHHHHH-HHHHHHHHhCccccccccHHHHHHHHHHHhchHHH
Confidence 88888776522 11111221111 23344343432 222 5677777777777743
No 215
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.11 E-value=4.8 Score=45.62 Aligned_cols=148 Identities=16% Similarity=0.182 Sum_probs=94.2
Q ss_pred CcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHH
Q 009636 285 GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQ 364 (530)
Q Consensus 285 ~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 364 (530)
+++|.|..-|.+++..+|..|+..+|.+......+.. --...+...++.-+.+. +..||.++.....++...++....
T Consensus 259 ~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~-~~~vR~~~v~~~~~~l~~~~~~~~ 336 (1266)
T KOG1525|consen 259 AVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDI-SVEVRMECVESIKQCLLNNPSIAK 336 (1266)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccC-ChhhhhhHHHHhHHHHhcCchhhh
Confidence 7888888889999999999999999999875543322 00124555666666667 889999999999888776555332
Q ss_pred HHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHh
Q 009636 365 AVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKV 443 (530)
Q Consensus 365 ~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~ 443 (530)
.. ++...+.. .+.|++++.....++.-+.. . ...-.++.. .+..+.+.+.+....|+..|+..|..+.+.
T Consensus 337 ~~---~~~~~l~~--~~~D~~~rir~~v~i~~~~v--~-~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 337 AS---TILLALRE--RDLDEDVRVRTQVVIVACDV--M-KFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred HH---HHHHHHHh--hcCChhhhheeeEEEEEeeh--h-HhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 22 12222222 23344554443332222211 0 111222233 667777777888999999999999988873
No 216
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=95.11 E-value=0.43 Score=43.52 Aligned_cols=100 Identities=14% Similarity=0.100 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhh
Q 009636 89 VQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL 168 (530)
Q Consensus 89 ~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll 168 (530)
....|++.|.-++--+ ++....+-+...+..|+++|.....+.++..++.+|..+..+++.+...+-+.+++..++.++
T Consensus 107 li~~aL~vLQGl~LLH-p~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 107 LIALALRVLQGLCLLH-PPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHcC-chHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 3445667777666553 444555567888999999996554589999999999999999999999999999999999999
Q ss_pred CC--CCHHHHHHHHHHHHhhhCC
Q 009636 169 YS--PSDDVREQAVWALGNIAGD 189 (530)
Q Consensus 169 ~~--~~~~i~~~a~~~L~nl~~~ 189 (530)
++ .+.+++-.++..|.-....
T Consensus 186 k~~~~~~~~r~K~~EFL~fyl~~ 208 (257)
T PF08045_consen 186 KSKSTDRELRLKCIEFLYFYLMP 208 (257)
T ss_pred ccccccHHHhHHHHHHHHHHHcc
Confidence 87 4577888888777766543
No 217
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=95.10 E-value=2.9 Score=38.96 Aligned_cols=204 Identities=12% Similarity=0.100 Sum_probs=130.4
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhc--CChHHHHHhhcCCC-chhHHHHHHHHhhhh
Q 009636 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQ--GGLVPLLAQLNGQP-KLSMLRNATWTLSNF 229 (530)
Q Consensus 153 ~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~--~~i~~Ll~ll~~~~-~~~~~~~a~~~L~~L 229 (530)
..+.++|.+..+++.+..-+.+.+..++.+..|+-...-..|....+. .-...+-.++.... .+++.-.+...+...
T Consensus 73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrEc 152 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYENTPEIALTCGNMLREC 152 (342)
T ss_pred HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHHH
Confidence 356678999999999988778888888888888864332222221111 01222223332222 245544444444444
Q ss_pred ccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCc----HHHHHHhhCCCCchhHHHH
Q 009636 230 CRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV----FPRLAEFLMHPSPSVLIPA 305 (530)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~----l~~L~~lL~~~~~~~~~~a 305 (530)
.+...-.........+......++.+.=++..+|..++..+.......+..+..... .+.--.++.+++.-++..+
T Consensus 153 irhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs 232 (342)
T KOG1566|consen 153 IRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQS 232 (342)
T ss_pred HhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHH
Confidence 444332233333455555666666676688888888888877655544444544332 3446667888999999999
Q ss_pred HHHHhHhhcCCch---hhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009636 306 LRTVGNIVTGDDM---QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (530)
Q Consensus 306 l~~L~nl~~~~~~---~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 357 (530)
+..+|.+.-+.+. ..+++-...-+..++.+|+.+ ...++-+|..+..-+.+
T Consensus 233 ~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdk-skniQ~eAFhvFKvfvA 286 (342)
T KOG1566|consen 233 LKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDK-SKNIQLEAFHVFKVFVA 286 (342)
T ss_pred HHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCc-cccchHHHHHHHHHHhc
Confidence 9999999765442 334444557788999999998 88999999888777766
No 218
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=94.94 E-value=2.2 Score=41.97 Aligned_cols=145 Identities=13% Similarity=0.169 Sum_probs=104.8
Q ss_pred HHHHHHHHhHhhc---CCchhhHHHhh-cCchHHHHHhhcCCC--chhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHH
Q 009636 302 LIPALRTVGNIVT---GDDMQTQCVIE-YQALPCLLNLLSGNY--KKSIKKEACWTVSNITAGNREQIQAVIEANIIGPL 375 (530)
Q Consensus 302 ~~~al~~L~nl~~---~~~~~~~~~~~-~~~l~~L~~lL~~~~--~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L 375 (530)
....++++..+.. +.......+++ ..++..|..++.+.. .+.+-..|+.+++.+....|.....+.+.|+++.+
T Consensus 77 lK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~ 156 (379)
T PF06025_consen 77 LKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAF 156 (379)
T ss_pred HHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHH
Confidence 3344555666555 33344455667 677788888888763 46788899999999998888888899999999999
Q ss_pred HHHHh-cC---chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCCh-------HHHHHHHHHHHHHHHhh
Q 009636 376 VALLE-NA---EFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDP-------RIVTVCLEGLENILKVG 444 (530)
Q Consensus 376 ~~ll~-~~---~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~-------~~~~~al~~l~~ll~~~ 444 (530)
++.+. .+ +.++-...-.+|..++. +....+.+.+.+.+..+.+++.+++. ++....-.++..|++..
T Consensus 157 L~~i~~~~i~~s~e~l~~lP~~l~AicL--N~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~ 234 (379)
T PF06025_consen 157 LDAITAKGILPSSEVLTSLPNVLSAICL--NNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHH 234 (379)
T ss_pred HHHHhccCCCCcHHHHHHHHHHHhHHhc--CHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccC
Confidence 99988 43 46677777778888887 56888999999999999998876432 23333444556666666
Q ss_pred hhhh
Q 009636 445 EAEK 448 (530)
Q Consensus 445 ~~~~ 448 (530)
+..+
T Consensus 235 p~Lk 238 (379)
T PF06025_consen 235 PSLK 238 (379)
T ss_pred HHHH
Confidence 6543
No 219
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=94.91 E-value=2.2 Score=42.59 Aligned_cols=259 Identities=14% Similarity=0.135 Sum_probs=145.8
Q ss_pred HHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-C
Q 009636 93 CTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-P 171 (530)
Q Consensus 93 a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~ 171 (530)
+-..|..++......+.+..++...+..|+.+++++| +.-|.....+|.++-......+..+.. .+...+.+++.. .
T Consensus 110 vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D-~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e~~ 187 (409)
T PF01603_consen 110 VYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPD-PRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYETE 187 (409)
T ss_dssp HHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSST-HHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcCcc
Confidence 4444555554422222333455667889999999999 899999999999888756666665543 445667777754 3
Q ss_pred CHHHHHHHHHHHHhhhCCCc-hhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHH
Q 009636 172 SDDVREQAVWALGNIAGDSP-RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAH 250 (530)
Q Consensus 172 ~~~i~~~a~~~L~nl~~~~~-~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ 250 (530)
...-...++.+++.+..+-. ..+..... -....++.+.....-.........++..++..++.. ...++..+++
T Consensus 188 ~~~gI~elLeil~sii~gf~~plk~eh~~-fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l----~~~~i~~llk 262 (409)
T PF01603_consen 188 RHNGIAELLEILGSIINGFAVPLKEEHKQ-FLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSL----AEPVIKGLLK 262 (409)
T ss_dssp --STHHHHHHHHHHHHTT--SS--HHHHH-HHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGG----HHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHhccCCCCcHHHHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchh----HHHHHHHHHH
Confidence 44455668888888876422 22222111 022334444433334455566666777666654322 2223333433
Q ss_pred hhcCCChhHHHHHHHHHHHhccCCh-HHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhh---c
Q 009636 251 LIHSNDDEVLTDACWALSYLSDGTN-DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIE---Y 326 (530)
Q Consensus 251 ll~~~d~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~---~ 326 (530)
.--..++.-..-.+.-+..+...-+ .....+ ...++..+...+.+.+..|.+.|+..+.| +... .++. .
T Consensus 263 ~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i-~~~lf~~la~ci~S~h~qVAErAl~~w~n-----~~~~-~li~~~~~ 335 (409)
T PF01603_consen 263 HWPKTNSQKEVLFLNELEEILEVLPPEEFQKI-MVPLFKRLAKCISSPHFQVAERALYFWNN-----EYFL-SLISQNSR 335 (409)
T ss_dssp HS-SS-HHHHHHHHHHHHHHHTT--HHHHHHH-HHHHHHHHHHHHTSSSHHHHHHHHGGGGS-----HHHH-HHHHCTHH
T ss_pred hCCCCCchhHHHHHHHHHHHHHhcCHHHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHCC-----HHHH-HHHHhChH
Confidence 3334454444445555555554332 333322 23577888888999999998888876543 2222 2222 2
Q ss_pred CchHHHHHhhcCC---C-chhHHHHHHHHHHHHhcCCHHHHHH
Q 009636 327 QALPCLLNLLSGN---Y-KKSIKKEACWTVSNITAGNREQIQA 365 (530)
Q Consensus 327 ~~l~~L~~lL~~~---~-~~~v~~~a~~~L~nl~~~~~~~~~~ 365 (530)
.++|.+..-|... + +..++..|..++.-+..-++.....
T Consensus 336 ~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~ 378 (409)
T PF01603_consen 336 VILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLFDK 378 (409)
T ss_dssp HHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 3677777776441 1 5689999999999888877665444
No 220
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=94.63 E-value=0.14 Score=36.62 Aligned_cols=65 Identities=20% Similarity=0.290 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhhhhHhhc
Q 009636 134 QFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQ 200 (530)
Q Consensus 134 ~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~ 200 (530)
...|+|+++++++ ++.....+.+.++++.++++... +...+|-.|.++|+-++.... ..+.+.+.
T Consensus 4 lKaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~-G~~~L~~~ 69 (73)
T PF14668_consen 4 LKAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEE-GAEILDEL 69 (73)
T ss_pred HHHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHH-HHHHHHHc
Confidence 4679999999998 66677777778999999999875 667899999999999986654 34444443
No 221
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.58 E-value=2.3 Score=44.04 Aligned_cols=106 Identities=21% Similarity=0.353 Sum_probs=76.8
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009636 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 153 (530)
.+.-+++...+.+..+++..+..|+.+... ...++..+-.++...+..-+.+.. |.++.+|+.+|+.+-.+..+.
T Consensus 86 ~f~hlLRg~Eskdk~VRfrvlqila~l~d~--~~eidd~vfn~l~e~l~~Rl~Dre-p~VRiqAv~aLsrlQ~d~~de-- 160 (892)
T KOG2025|consen 86 TFYHLLRGTESKDKKVRFRVLQILALLSDE--NAEIDDDVFNKLNEKLLIRLKDRE-PNVRIQAVLALSRLQGDPKDE-- 160 (892)
T ss_pred HHHHHHhcccCcchhHHHHHHHHHHHHhcc--ccccCHHHHHHHHHHHHHHHhccC-chHHHHHHHHHHHHhcCCCCC--
Confidence 456666677788999999999999988653 455666666777777777777777 899999999999998532211
Q ss_pred HHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCC
Q 009636 154 VVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDS 190 (530)
Q Consensus 154 ~~~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~ 190 (530)
+..++..+..+++. +++++|..|+ .||+.+.
T Consensus 161 ---e~~v~n~l~~liqnDpS~EVRRaaL---snI~vdn 192 (892)
T KOG2025|consen 161 ---ECPVVNLLKDLIQNDPSDEVRRAAL---SNISVDN 192 (892)
T ss_pred ---cccHHHHHHHHHhcCCcHHHHHHHH---HhhccCc
Confidence 12456777778766 7889998765 4555444
No 222
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.42 E-value=0.23 Score=45.78 Aligned_cols=144 Identities=11% Similarity=0.190 Sum_probs=98.1
Q ss_pred HHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 009636 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAV 366 (530)
Q Consensus 287 l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 366 (530)
+...+..|.+.+|.....++..+..++....+.....+. .++-.+++-+++. ...|-+.||.+++.++..-...+...
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNl-RS~VsraA~~t~~difs~ln~~i~~~ 167 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNL-RSAVSRAACMTLADIFSSLNNSIDQE 167 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667788999999999999999998877644433332 3455566667777 78899999999999987544444442
Q ss_pred HHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHH
Q 009636 367 IEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENIL 441 (530)
Q Consensus 367 ~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll 441 (530)
.+ +.+..|..--..++.-|+..|-.+|..++.+..+.. ++..|...+....+.++..+.-++.+..
T Consensus 168 ld-~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~--------~L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 168 LD-DLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK--------LLRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred HH-HHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH--------HHHHHHHHHhhhchhhhhhhhccccccc
Confidence 22 222222222222356689999999999998766542 4667777788888888777666555443
No 223
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=94.42 E-value=1.6 Score=47.06 Aligned_cols=185 Identities=16% Similarity=0.119 Sum_probs=128.0
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 009636 76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV 155 (530)
Q Consensus 76 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~ 155 (530)
+.+-..+.+.++..+.+|+..+...++... ....-...|.+-.+......+.+..+...|+.+|..|+..........
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~--~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~ 333 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAK--KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKY 333 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccc--cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHH
Confidence 344445668999999999999999987642 111111235555566555444447888999999999998654432222
Q ss_pred HhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCC-
Q 009636 156 IDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP- 234 (530)
Q Consensus 156 ~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~- 234 (530)
..++++.|+.-+......+++.+..++-.++...+. ....+.++..+ .+.++.+...+...+........
T Consensus 334 -~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~l-k~knp~~k~~~~~~l~r~~~~~~~ 404 (815)
T KOG1820|consen 334 -AKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAILEAL-KGKNPQIKGECLLLLDRKLRKLGP 404 (815)
T ss_pred -HHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHh-cCCChhhHHHHHHHHHHHHhhcCC
Confidence 246788999999888888888877777666543221 12456666777 78888888876666665555442
Q ss_pred -CCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 009636 235 -QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLS 271 (530)
Q Consensus 235 -~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~ 271 (530)
.........++|.++....+.+.+|+..+..+++-+.
T Consensus 405 ~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~ 442 (815)
T KOG1820|consen 405 KTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVM 442 (815)
T ss_pred cCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHH
Confidence 2334456888999999999999999999998887765
No 224
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=94.37 E-value=4.1 Score=48.08 Aligned_cols=271 Identities=10% Similarity=0.069 Sum_probs=140.9
Q ss_pred CCCHHHHHHHHHHHHhhhCCC---chhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHH
Q 009636 170 SPSDDVREQAVWALGNIAGDS---PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALP 246 (530)
Q Consensus 170 ~~~~~i~~~a~~~L~nl~~~~---~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~ 246 (530)
+++..+...|+..|..++..- ++....-.+..++.++..++..+.+.++++.++.|+.++.......-..-...++.
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~ 1227 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFM 1227 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHH
Confidence 345566667777666666321 11111122345778888888777788999999999998876642211112233344
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHhccCChHHHH----HHHHhCcHHHHHHhhCCC-CchhHHHHHHHHhHhhc----CCc
Q 009636 247 ALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQ----AVIEAGVFPRLAEFLMHP-SPSVLIPALRTVGNIVT----GDD 317 (530)
Q Consensus 247 ~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~----~~~~~~~l~~L~~lL~~~-~~~~~~~al~~L~nl~~----~~~ 317 (530)
.+.......++.+...+..++..+....-..+. ..+ ..++..+..+.... +.++-..|+..|.+++. +.-
T Consensus 1228 VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F-~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~ 1306 (1780)
T PLN03076 1228 VFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTF-TDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDL 1306 (1780)
T ss_pred HHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHH-HHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccc
Confidence 444444455677777777777665532111000 000 13344444444433 34455566666654421 000
Q ss_pred -----------------------hhh-----HHHhhcCchHHHH---HhhcCCCchhHHHHHHHHHHHHhcC-----CHH
Q 009636 318 -----------------------MQT-----QCVIEYQALPCLL---NLLSGNYKKSIKKEACWTVSNITAG-----NRE 361 (530)
Q Consensus 318 -----------------------~~~-----~~~~~~~~l~~L~---~lL~~~~~~~v~~~a~~~L~nl~~~-----~~~ 361 (530)
... ........++.|. .+..+. +++||..|..+|-.+... +++
T Consensus 1307 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~-RlEVR~~ALqtLF~iL~~yG~~Fs~~ 1385 (1780)
T PLN03076 1307 GSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDP-RPEIRKSALQVLFDTLRNHGHLFSLP 1385 (1780)
T ss_pred cccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhhccCCHH
Confidence 000 0000112334333 334555 899999999988887651 233
Q ss_pred HHHHHHHhCcHHHHHHHHhcC-----------------------chhHHHHHHHHHHHhhcCCCHHHHHHHH--HcCChH
Q 009636 362 QIQAVIEANIIGPLVALLENA-----------------------EFDIKKEAAWAISNATSGGTHEQIKFLV--IQGCIK 416 (530)
Q Consensus 362 ~~~~l~~~~~i~~L~~ll~~~-----------------------~~~v~~~a~~aL~nl~~~~~~~~~~~l~--~~~~i~ 416 (530)
....++. +++.+++..+... +..+...+..+|.+++.-- ..+...+- =.+++.
T Consensus 1386 ~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLf-t~fFd~L~~~L~~~l~ 1463 (1780)
T PLN03076 1386 LWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLF-VKFYPTVNPLLKKVLM 1463 (1780)
T ss_pred HHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 3333333 5666666655321 0012233333344333311 02222221 125566
Q ss_pred HHHhccCCCChHHHHHHHHHHHHHHHhh
Q 009636 417 PLCDLLVCPDPRIVTVCLEGLENILKVG 444 (530)
Q Consensus 417 ~L~~lL~~~~~~~~~~al~~l~~ll~~~ 444 (530)
.|..++..++..+...+..+|.+++...
T Consensus 1464 ll~~ci~q~n~~la~ig~~~l~~li~~n 1491 (1780)
T PLN03076 1464 LLVSFIKRPHQSLAGIGIAAFVRLMSNA 1491 (1780)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHHHHHh
Confidence 6777777888888889999999887543
No 225
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=94.33 E-value=7 Score=39.89 Aligned_cols=258 Identities=13% Similarity=0.076 Sum_probs=134.1
Q ss_pred HhhcCC-ChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhC
Q 009636 80 AGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDH 158 (530)
Q Consensus 80 ~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~ 158 (530)
.++..+ ..+.|..++..+..++........ .. =..+...+.....++.-..-+.+|..|+.+..+. ..++.
T Consensus 35 DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~--~~----R~~fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~ 106 (464)
T PF11864_consen 35 DLIDPNQPSEARRAALELLIACIKRQDSSSG--LM----RAEFFRDISDPSNDDDFDLRLEALIALTDNGRDI--DFFEY 106 (464)
T ss_pred hhcCCCCCHHHHHHHHHHHHHHHHccccccH--HH----HHHHHHHHhcCCCchhHHHHHHHHHHHHcCCcCc--hhccc
Confidence 344443 456888888888888766422111 11 1123344443322332233344444555433332 22456
Q ss_pred CChHHHHHhhCCC---------------------------CHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc
Q 009636 159 GAVPIFVKLLYSP---------------------------SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN 211 (530)
Q Consensus 159 g~i~~L~~ll~~~---------------------------~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~ 211 (530)
++.+.|...+..- +.......+..+.|+...+...-+.-.-.+.+..++.+..
T Consensus 107 ~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~ 186 (464)
T PF11864_consen 107 EIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICK 186 (464)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHh
Confidence 7777777766321 1222334445555555443322111112234555555554
Q ss_pred CCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHH
Q 009636 212 GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLA 291 (530)
Q Consensus 212 ~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~ 291 (530)
...+....+.++.++-.+.... ..+......++..|....... +....+-.++.||+...... ..+..|.
T Consensus 187 ~Ts~~~di~~~L~vldaii~y~-~iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g~-------~~i~~L~ 256 (464)
T PF11864_consen 187 STSSEDDIEACLSVLDAIITYG-DIPSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLGH-------SAIRTLC 256 (464)
T ss_pred ccCcHHHHHHHHHHHHHHHHcC-cCChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCccHH-------HHHHHHH
Confidence 4555555566666666665543 122223334444444443222 55556666777777544322 2356677
Q ss_pred HhhCC------CCchhHHHHHHHHhHhhcCCchhhHHHhhc---CchHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 009636 292 EFLMH------PSPSVLIPALRTVGNIVTGDDMQTQCVIEY---QALPCLLNLLSGNYKKSIKKEACWTVSNIT 356 (530)
Q Consensus 292 ~lL~~------~~~~~~~~al~~L~nl~~~~~~~~~~~~~~---~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~ 356 (530)
.+|.+ .+..+..-|+..++.+..+.......-+.. -+++.+...++.. ++.+-.+....+.++.
T Consensus 257 ~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~-~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 257 DILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSN-SPRVDYEILLLINRLL 329 (464)
T ss_pred HHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCC-CCeehHHHHHHHHHHH
Confidence 77732 244567789999999887763332222221 3788888888877 7767777777777765
No 226
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=94.26 E-value=5.5 Score=39.37 Aligned_cols=133 Identities=11% Similarity=0.088 Sum_probs=90.7
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCc--HHHHHHcCCHHHHHHhhcCCC----CHH--HHHHHHHHHHHHhc
Q 009636 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPP--IEEVIRSGVVPRFVEFLLRED----YPQ--LQFEAAWALTNIAS 146 (530)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~--~~~~~~~g~v~~Lv~ll~~~~----~~~--i~~~a~~~L~~l~~ 146 (530)
...+..++...+.+.++.|+-...+++.+.+-.. .+.+.+.-..+.+-+++.+.+ .|+ .+.-++.+|+.+|.
T Consensus 13 ~~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~ 92 (698)
T KOG2611|consen 13 LDDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCR 92 (698)
T ss_pred hhhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhC
Confidence 3456667777778899999999999987754222 344667767888888887643 232 34556667777777
Q ss_pred CChhhH--HHHHhCCChHHHHHhhCC-CCH------HHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc
Q 009636 147 GTSEHT--KVVIDHGAVPIFVKLLYS-PSD------DVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN 211 (530)
Q Consensus 147 ~~~~~~--~~~~~~g~i~~L~~ll~~-~~~------~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~ 211 (530)
.++.. ..++ +.||.|+.+++. .++ .+.+.|-.+|..+++..+. ...++..|.++.+.++-.
T Consensus 93 -~pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G-~~~Lia~G~~~~~~Q~y~ 162 (698)
T KOG2611|consen 93 -VPELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAG-LMTLIASGGLRVIAQMYE 162 (698)
T ss_pred -ChhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCch-hHHHHhcCchHHHHHHHh
Confidence 33322 2233 468999998865 222 3678888899999888664 456678899999987763
No 227
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=94.23 E-value=4.4 Score=40.50 Aligned_cols=233 Identities=14% Similarity=0.074 Sum_probs=131.0
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCC
Q 009636 155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP 234 (530)
Q Consensus 155 ~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~ 234 (530)
.++...+..|+.++.++++.-|+....+|.++-+.....|..+.. .+...+.+.+.......-...++..++.+..+..
T Consensus 129 ~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~ 207 (409)
T PF01603_consen 129 YIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYETERHNGIAELLEILGSIINGFA 207 (409)
T ss_dssp TS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--
T ss_pred HcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcCcccccCHHHHHHHHHHHHhccC
Confidence 344456788999999999999999999999987666656655443 3555666666555566677778888888887753
Q ss_pred CCC-hhhhhchHHHHHHhhcCCC-hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHh
Q 009636 235 QPP-FDQVSPALPALAHLIHSND-DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312 (530)
Q Consensus 235 ~~~-~~~~~~~l~~L~~ll~~~d-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl 312 (530)
.+- .....-....++.+..... .........++..+...++.....++ ..++..=-..+..-...-+.-+..+
T Consensus 208 ~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i-----~~llk~WP~t~s~Kev~FL~el~~i 282 (409)
T PF01603_consen 208 VPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVI-----KGLLKHWPKTNSQKEVLFLNELEEI 282 (409)
T ss_dssp SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHH-----HHHHHHS-SS-HHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHH-----HHHHHhCCCCCchhHHHHHHHHHHH
Confidence 222 2233333345555655543 22334444455444444443333222 2222222223333334445556666
Q ss_pred hcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH---hCcHHHHHHHHhc-----Cch
Q 009636 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIE---ANIIGPLVALLEN-----AEF 384 (530)
Q Consensus 313 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~i~~L~~ll~~-----~~~ 384 (530)
....+...-.-+...+...+...+.+. +..|.+.|+....| +.+-.++. ..++|.+...+.. .+.
T Consensus 283 l~~~~~~~f~~i~~~lf~~la~ci~S~-h~qVAErAl~~w~n------~~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~ 355 (409)
T PF01603_consen 283 LEVLPPEEFQKIMVPLFKRLAKCISSP-HFQVAERALYFWNN------EYFLSLISQNSRVILPIIFPALYRNSKNHWNQ 355 (409)
T ss_dssp HTT--HHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHGGGGS------HHHHHHHHCTHHHHHHHHHHHHSSTTSS-SST
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHCC------HHHHHHHHhChHHHHHHHHHHHHHHHHHHhhH
Confidence 554332221223345677788888888 88888887765432 22222332 1256666666532 267
Q ss_pred hHHHHHHHHHHHhhcC
Q 009636 385 DIKKEAAWAISNATSG 400 (530)
Q Consensus 385 ~v~~~a~~aL~nl~~~ 400 (530)
.|+..|..++.-+...
T Consensus 356 ~Vr~~a~~vl~~l~~~ 371 (409)
T PF01603_consen 356 TVRNLAQNVLKILMEM 371 (409)
T ss_dssp THHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8999988888888775
No 228
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=94.22 E-value=1.2 Score=39.13 Aligned_cols=147 Identities=16% Similarity=0.143 Sum_probs=94.1
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009636 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 153 (530)
-++.+++...+++..++..|+..+.-++...=..|.. .+|.|+.+..+++ +.++..|...+..+....+....
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~------cvp~lIAL~ts~~-~~ir~~A~~~l~~l~eK~~s~v~ 81 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQ------CVPTLIALETSPN-PSIRSRAYQLLKELHEKHESLVE 81 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHH------HHhHhhhhhCCCC-hHHHHHHHHHHHHHHHHhHHHHH
Confidence 4688888888999999999999999887654223333 5999999999988 99999999999999886555444
Q ss_pred HHHhCCChHHHHHh---hCCCCH-HH---HHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCC-------CchhHH
Q 009636 154 VVIDHGAVPIFVKL---LYSPSD-DV---REQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQ-------PKLSML 219 (530)
Q Consensus 154 ~~~~~g~i~~L~~l---l~~~~~-~i---~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~-------~~~~~~ 219 (530)
.-...| +..-..+ +..+.. .. ....+..+..+...+...|.. ++..+++.+... ....-.
T Consensus 82 ~~~~~g-i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~-----Fl~~l~k~f~~~~~~~~~~~~~~~l 155 (187)
T PF12830_consen 82 SRYSEG-IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRK-----FLKSLLKQFDFDLTKLSSESSPSDL 155 (187)
T ss_pred HHHHHH-HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHH-----HHHHHHHHHHhhccccccccchhHH
Confidence 433333 2222222 221111 11 455556666666655555555 455666666322 133445
Q ss_pred HHHHHHhhhhccCC
Q 009636 220 RNATWTLSNFCRGK 233 (530)
Q Consensus 220 ~~a~~~L~~L~~~~ 233 (530)
...+++..||+.-+
T Consensus 156 ~~~~Fla~nLA~l~ 169 (187)
T PF12830_consen 156 DFLLFLAENLATLP 169 (187)
T ss_pred HHHHHHHHHHhcCC
Confidence 55666666666553
No 229
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=94.20 E-value=1.6 Score=45.28 Aligned_cols=138 Identities=14% Similarity=0.167 Sum_probs=95.0
Q ss_pred hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhh-CCCCchhHHHHHHHHhHhhcCC
Q 009636 238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL-MHPSPSVLIPALRTVGNIVTGD 316 (530)
Q Consensus 238 ~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~~~~~al~~L~nl~~~~ 316 (530)
......++|.|...+++.+..+++.++..+..+++.-+. ..++.-+++.|..+. .+.+..++..++-|++.++...
T Consensus 384 e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~---~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~l 460 (700)
T KOG2137|consen 384 EEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDV---PFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRL 460 (700)
T ss_pred HHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccH---HHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHH
Confidence 344578889888899999999999999999888766542 255567788887763 4567889999999999998322
Q ss_pred chhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCch
Q 009636 317 DMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEF 384 (530)
Q Consensus 317 ~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~ 384 (530)
+.. .+ ...+..+....+.. ++.+......+..++....... ..++...++|.++.+...+..
T Consensus 461 D~~--~v--~d~~lpi~~~~~~~-dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~L 522 (700)
T KOG2137|consen 461 DKA--AV--LDELLPILKCIKTR-DPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPSL 522 (700)
T ss_pred HHH--Hh--HHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhcccc
Confidence 211 11 12344455555566 8888877777777766532222 345566788988888766643
No 230
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=94.17 E-value=4.9 Score=37.49 Aligned_cols=208 Identities=14% Similarity=0.111 Sum_probs=142.2
Q ss_pred HHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCc---hhhHHHh--hcCchHHHHHhhcCCCchhHHHHHHHHH
Q 009636 278 IQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD---MQTQCVI--EYQALPCLLNLLSGNYKKSIKKEACWTV 352 (530)
Q Consensus 278 ~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~---~~~~~~~--~~~~l~~L~~lL~~~~~~~v~~~a~~~L 352 (530)
.+.+.++|++..++..+...+...+..++.+..|+....- ..+...+ +..++..|+.--.. .+++--.+...+
T Consensus 72 tqef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~--~~~iaL~cg~ml 149 (342)
T KOG1566|consen 72 TQEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN--TPEIALTCGNML 149 (342)
T ss_pred HHHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc--chHHHHHHHHHH
Confidence 3557788999999999999999999999999999875332 1111122 22344444444111 134433333334
Q ss_pred HHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcC---ChHHHHhccCCCChHH
Q 009636 353 SNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQG---CIKPLCDLLVCPDPRI 429 (530)
Q Consensus 353 ~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~---~i~~L~~lL~~~~~~~ 429 (530)
..+..+ +.....+....-+......+..+..++...|..++..+......-..+++..+. ..+....++.+++.-+
T Consensus 150 rEcirh-e~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvt 228 (342)
T KOG1566|consen 150 RECIRH-EFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVT 228 (342)
T ss_pred HHHHhh-HHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceeh
Confidence 433333 344455666777888888899999999999999999988764433344444321 2444677889999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 009636 430 VTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLD 496 (530)
Q Consensus 430 ~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~~ 496 (530)
...++.+++.++...++...+ ...+.+...+..+..|+..+...++-.|..+...|-..
T Consensus 229 krqs~kllg~llldr~N~~~M--------~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAn 287 (342)
T KOG1566|consen 229 KRQSLKLLGELLLDRSNSAVM--------TKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVAN 287 (342)
T ss_pred HHHHHHhHHHHHhCCCcHHHH--------HHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcC
Confidence 999999999998777665432 45566666788888999999999999998888766543
No 231
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=94.02 E-value=6.2 Score=38.18 Aligned_cols=159 Identities=18% Similarity=0.172 Sum_probs=115.1
Q ss_pred hHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHh-C-cHHHHHHHHhcC-----c--------hhHHHHHHH
Q 009636 329 LPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQAVIEA-N-IIGPLVALLENA-----E--------FDIKKEAAW 392 (530)
Q Consensus 329 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~-~-~i~~L~~ll~~~-----~--------~~v~~~a~~ 392 (530)
++.+...|... ...+...+...|..++. ........++.. + -.+.+-+++... + +.+|...+.
T Consensus 58 ~k~lyr~L~~~-~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~ 136 (330)
T PF11707_consen 58 LKLLYRSLSSS-KPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR 136 (330)
T ss_pred HHHHHHHhCcC-cHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence 77888888888 77788888899999988 665666666642 1 133444444211 1 289999999
Q ss_pred HHHHhhcCCCHHHHHHHHH-cCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHH
Q 009636 393 AISNATSGGTHEQIKFLVI-QGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKI 471 (530)
Q Consensus 393 aL~nl~~~~~~~~~~~l~~-~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l 471 (530)
.+..+...+++...+.+++ .+.+..+..-+...+++++..++.++..-+-..+...... -...|. ...+.+|
T Consensus 137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~------K~~~fn-~~~L~~l 209 (330)
T PF11707_consen 137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRST------KCKLFN-EWTLSQL 209 (330)
T ss_pred HHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhh------hhhhcC-HHHHHHH
Confidence 9999999888888888775 4678889999999888999999999986443333322211 133343 4468888
Q ss_pred HHHhcCCCH----HHHHHHHHHHHHhCC
Q 009636 472 ESLQTHDNA----EIYEKSVKLLETYWL 495 (530)
Q Consensus 472 ~~l~~~~~~----~v~~~a~~il~~~~~ 495 (530)
..|-+..++ .+.+.+...+..+..
T Consensus 210 ~~Ly~~~~~~~~~~~~~~vh~fL~~lcT 237 (330)
T PF11707_consen 210 ASLYSRDGEDEKSSVADLVHEFLLALCT 237 (330)
T ss_pred HHHhcccCCcccchHHHHHHHHHHHHhc
Confidence 888888888 999999999998865
No 232
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=93.99 E-value=6.3 Score=38.13 Aligned_cols=156 Identities=17% Similarity=0.155 Sum_probs=109.9
Q ss_pred HHHHHHhhCCCCchhHHHHHHHHhHhhc-CCchhhHHHhhc-C-chHHHHHhhcCCC---c---------hhHHHHHHHH
Q 009636 287 FPRLAEFLMHPSPSVLIPALRTVGNIVT-GDDMQTQCVIEY-Q-ALPCLLNLLSGNY---K---------KSIKKEACWT 351 (530)
Q Consensus 287 l~~L~~lL~~~~~~~~~~al~~L~nl~~-~~~~~~~~~~~~-~-~l~~L~~lL~~~~---~---------~~v~~~a~~~ 351 (530)
+..+...|......+..++++.|..++. ........++.. + -.+.+.+++.... . +.+|......
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 7788888999998899999999999998 444566566533 1 2334444443210 1 2788887765
Q ss_pred HHH-HhcCCHHHHHHHHH-hCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCC---CHHHHHHHHHcCChHHHHhccCCCC
Q 009636 352 VSN-ITAGNREQIQAVIE-ANIIGPLVALLENAEFDIKKEAAWAISNATSGG---THEQIKFLVIQGCIKPLCDLLVCPD 426 (530)
Q Consensus 352 L~n-l~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~---~~~~~~~l~~~~~i~~L~~lL~~~~ 426 (530)
+.. +..+++.....++. .+.+..+.+-|..+++++....+.+|..-+... .....-.+.....+..|..+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 544 44477777777664 567888999898888999999999998544322 2233334456667888999888777
Q ss_pred h----HHHHHHHHHHHHHHH
Q 009636 427 P----RIVTVCLEGLENILK 442 (530)
Q Consensus 427 ~----~~~~~al~~l~~ll~ 442 (530)
+ .+...+-+.|..++.
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT 237 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCT 237 (330)
T ss_pred CcccchHHHHHHHHHHHHhc
Confidence 7 788888888888774
No 233
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=93.95 E-value=4.9 Score=36.70 Aligned_cols=202 Identities=21% Similarity=0.164 Sum_probs=117.0
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhH
Q 009636 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197 (530)
Q Consensus 118 v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i 197 (530)
+|.|+.-+....++..+...+.+|..++......... ++..|..+...+....+..+...+..+-...+..-
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f--- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF--- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence 4555553444445999999999999999844223222 34566666766666666667777777765444211
Q ss_pred hhcCChHHHHHhh---------cCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhh-cCCChhHHHHHHHHH
Q 009636 198 LSQGGLVPLLAQL---------NGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI-HSNDDEVLTDACWAL 267 (530)
Q Consensus 198 ~~~~~i~~Ll~ll---------~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll-~~~d~~v~~~a~~~l 267 (530)
+.+..++..+ ..+...+.......++..+|...|. ....+++.+..++ ++.++.++..++.++
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l 146 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEAL 146 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 3444444441 1122344555556788888888765 4566778888888 788888999999999
Q ss_pred HHhccCChHHHHHHHHhCcHHHHHHhhCCC-CchhHHHHHHHHhHhhcCCch-hhHHHhhcCchHHHHHhhcCC
Q 009636 268 SYLSDGTNDKIQAVIEAGVFPRLAEFLMHP-SPSVLIPALRTVGNIVTGDDM-QTQCVIEYQALPCLLNLLSGN 339 (530)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~~~~al~~L~nl~~~~~~-~~~~~~~~~~l~~L~~lL~~~ 339 (530)
..++...--.+. .....+.+-++.+ .+.+....+..++.+..+.-+ .........++..+.++..+.
T Consensus 147 ~~Lc~~~vvd~~-----s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~ 215 (234)
T PF12530_consen 147 APLCEAEVVDFY-----SAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSS 215 (234)
T ss_pred HHHHHHhhccHH-----HHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccc
Confidence 999843221111 2223344444433 334444444444433332211 111234456677777777665
No 234
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=93.92 E-value=4.9 Score=36.65 Aligned_cols=201 Identities=18% Similarity=0.219 Sum_probs=112.8
Q ss_pred HHHHH-hhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhh
Q 009636 162 PIFVK-LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240 (530)
Q Consensus 162 ~~L~~-ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~ 240 (530)
+.|+. .-+..+++.....+.+|..++.+...+... ++..+..+. ..........+...+..+-... ...+
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~-~~~~~~~~~~~~rLl~~lw~~~-~r~f-- 73 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLV-EQGSLELRYVALRLLTLLWKAN-DRHF-- 73 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHH-cCCchhHHHHHHHHHHHHHHhC-chHH--
Confidence 44444 334578899999999999999776212222 344455555 4444444444555555555442 2222
Q ss_pred hhchHHHHHHh--------hc--CCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhh-CCCCchhHHHHHHHH
Q 009636 241 VSPALPALAHL--------IH--SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL-MHPSPSVLIPALRTV 309 (530)
Q Consensus 241 ~~~~l~~L~~l--------l~--~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~~~~~al~~L 309 (530)
+.+..++.. .. +...+.......++..++...++. ...+++.+..+| .+.++.++..++..+
T Consensus 74 --~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~-----g~~ll~~ls~~L~~~~~~~~~alale~l 146 (234)
T PF12530_consen 74 --PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDH-----GVDLLPLLSGCLNQSCDEVAQALALEAL 146 (234)
T ss_pred --HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhh-----HHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 223322222 01 112344455556777787766652 235677888888 788888999999999
Q ss_pred hHhhcCCchhhHHHhh-cCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCH-HHHHHHHHhCcHHHHHHHHhcCch
Q 009636 310 GNIVTGDDMQTQCVIE-YQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR-EQIQAVIEANIIGPLVALLENAEF 384 (530)
Q Consensus 310 ~nl~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~-~~~~~l~~~~~i~~L~~ll~~~~~ 384 (530)
..++... +++ ......+.+-+..+..+.+.+..|..+..+..+.- ..-.......++..+.+.....+.
T Consensus 147 ~~Lc~~~------vvd~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~ 217 (234)
T PF12530_consen 147 APLCEAE------VVDFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDV 217 (234)
T ss_pred HHHHHHh------hccHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccccc
Confidence 9998322 221 13344555555555567777766655555554321 111222344566677776666553
No 235
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=93.91 E-value=6.6 Score=39.87 Aligned_cols=109 Identities=17% Similarity=0.209 Sum_probs=80.3
Q ss_pred hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCc
Q 009636 238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD 317 (530)
Q Consensus 238 ~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~ 317 (530)
...+.+.+..++..+.+.|..|+..++..+..++..-.+ +...+-.|++..|.+-+-+.++.++..|+.+|+.+-....
T Consensus 86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e-IDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ 164 (885)
T COG5218 86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE-IDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL 164 (885)
T ss_pred hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC
Confidence 455678888888888999999999999999888765433 3445556888889888889999999999999998854322
Q ss_pred hhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHH
Q 009636 318 MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTV 352 (530)
Q Consensus 318 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L 352 (530)
..- ..+...|..+++.+.+.+||+.|..-+
T Consensus 165 nee-----n~~~n~l~~~vqnDPS~EVRr~allni 194 (885)
T COG5218 165 NEE-----NRIVNLLKDIVQNDPSDEVRRLALLNI 194 (885)
T ss_pred ChH-----HHHHHHHHHHHhcCcHHHHHHHHHHHe
Confidence 111 123446777777765778888765443
No 236
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=93.56 E-value=6.2 Score=41.15 Aligned_cols=175 Identities=15% Similarity=0.122 Sum_probs=105.6
Q ss_pred hhhchHHHHHHhhcCCC-hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCch
Q 009636 240 QVSPALPALAHLIHSND-DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM 318 (530)
Q Consensus 240 ~~~~~l~~L~~ll~~~d-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~ 318 (530)
.....+|.|...+...+ .++....+.-+.-|...-+ ..-+...+++.|..-+++.+..++..++..+...+..-+.
T Consensus 346 ~~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~---~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~ 422 (700)
T KOG2137|consen 346 FGPKMLPALKPIYSASDPKQALLFILENMDLLKEKTP---PEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDV 422 (700)
T ss_pred hhhhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCC---hHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccH
Confidence 34556777777776433 2222222211111221111 1123347788888888999999999999999998875552
Q ss_pred hhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhh
Q 009636 319 QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNAT 398 (530)
Q Consensus 319 ~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~ 398 (530)
..+..-++|.+..+........++..++-+++-+.. .++...-...+.++.+.....++.+......+..++.
T Consensus 423 ---~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q----~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~ 495 (700)
T KOG2137|consen 423 ---PFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ----RLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALA 495 (700)
T ss_pred ---HHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH----HHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 345667888888876554477888998888888862 1111111123445555566678899888888888777
Q ss_pred cCCCHHHHHHHHHcCChHHHHhccCCCC
Q 009636 399 SGGTHEQIKFLVIQGCIKPLCDLLVCPD 426 (530)
Q Consensus 399 ~~~~~~~~~~l~~~~~i~~L~~lL~~~~ 426 (530)
..... . ..+....+++.+..+...+.
T Consensus 496 ~~~~~-g-~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 496 LIIYS-G-VEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred hhccc-c-eeeehhhhhhhhhhhhhccc
Confidence 64321 1 23344566666666555443
No 237
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=92.66 E-value=1.7 Score=43.51 Aligned_cols=158 Identities=13% Similarity=0.086 Sum_probs=110.7
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC---CHHHHHHHHHHHHHHhcCChh
Q 009636 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED---YPQLQFEAAWALTNIASGTSE 150 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~---~~~i~~~a~~~L~~l~~~~~~ 150 (530)
....+.+.+.+++...+..|+..+..+... ......++....+..|..++.+++ ...+...+++++..+-...-
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d--~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv- 160 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLSLD--PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV- 160 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhcccc--HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-
Confidence 557889999999999999999998877433 456788898888999999998876 23444455555554443211
Q ss_pred hHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhh
Q 009636 151 HTKVVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228 (530)
Q Consensus 151 ~~~~~~~~g~i~~L~~ll~~--~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~ 228 (530)
..-..+...+|.....+... .+..+...|+..|-++...++..++.+.+.--+..|+..+ ...+..++..|...+..
T Consensus 161 vsW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hl-q~~n~~i~~~aial~na 239 (713)
T KOG2999|consen 161 VSWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHL-QVSNQRIQTCAIALLNA 239 (713)
T ss_pred eeeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHH-HhcchHHHHHHHHHHHH
Confidence 11111122334444444422 3455677888889888888877888888888899999999 77788888888888888
Q ss_pred hccCCCC
Q 009636 229 FCRGKPQ 235 (530)
Q Consensus 229 L~~~~~~ 235 (530)
+....+.
T Consensus 240 l~~~a~~ 246 (713)
T KOG2999|consen 240 LFRKAPD 246 (713)
T ss_pred HHhhCCh
Confidence 8776644
No 238
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=92.64 E-value=1.7 Score=38.11 Aligned_cols=114 Identities=17% Similarity=0.135 Sum_probs=75.9
Q ss_pred hCCCCchhHHHHHHHHhHhhcCCchhhHHHh----------------hcCchHHHHHhhcCCC-----chhHHHHHHHHH
Q 009636 294 LMHPSPSVLIPALRTVGNIVTGDDMQTQCVI----------------EYQALPCLLNLLSGNY-----KKSIKKEACWTV 352 (530)
Q Consensus 294 L~~~~~~~~~~al~~L~nl~~~~~~~~~~~~----------------~~~~l~~L~~lL~~~~-----~~~v~~~a~~~L 352 (530)
+.+.+......++..|+|++.... ....++ ....+..|+..+..+. ...--...+.++
T Consensus 4 i~~~~~~~adl~~MLLsNlT~~~~-~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl 82 (192)
T PF04063_consen 4 ITDPKSPLADLACMLLSNLTRSDS-GCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVL 82 (192)
T ss_pred ecCCCcchHHHHHHHHHHhccchH-HHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHH
Confidence 344555667778888888887433 222222 1236777777776611 234456788899
Q ss_pred HHHhcCCHHHHHHHHH--hCc--HHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 009636 353 SNITAGNREQIQAVIE--ANI--IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVI 411 (530)
Q Consensus 353 ~nl~~~~~~~~~~l~~--~~~--i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~ 411 (530)
+|++.. ++.++.+++ .+. +..|+..+.+.+..-|.-++.+|.|++... +.-.+|..
T Consensus 83 ~NlS~~-~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~--~~H~~LL~ 142 (192)
T PF04063_consen 83 ANLSQL-PEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDT--DSHEWLLS 142 (192)
T ss_pred HHhcCC-HHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccH--hHHHHhcC
Confidence 999765 677777774 234 788888888887777888899999999853 44455543
No 239
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=92.62 E-value=1.6 Score=38.29 Aligned_cols=123 Identities=13% Similarity=0.092 Sum_probs=77.9
Q ss_pred ChhHHHHHHHHHHHhccCChHHHHHH---------------HHhCcHHHHHHhhCC------CCchhHHHHHHHHhHhhc
Q 009636 256 DDEVLTDACWALSYLSDGTNDKIQAV---------------IEAGVFPRLAEFLMH------PSPSVLIPALRTVGNIVT 314 (530)
Q Consensus 256 d~~v~~~a~~~l~~l~~~~~~~~~~~---------------~~~~~l~~L~~lL~~------~~~~~~~~al~~L~nl~~ 314 (530)
+......++..|+|++.........+ .+...+..|+.++.. +...-......++.|++.
T Consensus 8 ~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~ 87 (192)
T PF04063_consen 8 KSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ 87 (192)
T ss_pred CcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC
Confidence 34445566777778776544322111 112356777777655 234456678889999987
Q ss_pred CCchhhHHHhhc--Cc--hHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH--hCcHHHHHHHHh
Q 009636 315 GDDMQTQCVIEY--QA--LPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIE--ANIIGPLVALLE 380 (530)
Q Consensus 315 ~~~~~~~~~~~~--~~--l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~--~~~i~~L~~ll~ 380 (530)
.+..++.+++. +. +..|+..+.+. +..-|.-++.+|.|+|.....+-..+-. .+++|.|+--+.
T Consensus 88 -~~~gR~~~l~~~~~~~~l~kLl~ft~~~-s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 88 -LPEGRQFFLDPQRYDGPLQKLLPFTEHK-SVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred -CHHHHHHHhCchhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 45556666643 34 78888888887 7767778889999999876555333332 356666665554
No 240
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.57 E-value=3.8 Score=42.45 Aligned_cols=229 Identities=13% Similarity=0.072 Sum_probs=131.6
Q ss_pred hhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC---CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc--c
Q 009636 198 LSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK---PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLS--D 272 (530)
Q Consensus 198 ~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~---~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~--~ 272 (530)
++.|+++.++.....-+...+....-.+|+.+.... .........-.-|.|...|+..+..|+.+|+..+.++- .
T Consensus 126 iE~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~ 205 (1005)
T KOG1949|consen 126 IENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIR 205 (1005)
T ss_pred HhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCC
Confidence 455677766665433333344444444555554433 11112222334466777888899999999999998875 2
Q ss_pred CCh---HHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHh----hcCCCchhHH
Q 009636 273 GTN---DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNL----LSGNYKKSIK 345 (530)
Q Consensus 273 ~~~---~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~l----L~~~~~~~v~ 345 (530)
+++ +....+++ .-...+.++|.++-+.++..|..-++.+... ...++...++..++.. +..+...+||
T Consensus 206 dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~----fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR 280 (1005)
T KOG1949|consen 206 DPDLHAEEMDSIIQ-KQFEELYSLLEDPYPMVRSTAILGVCKITSK----FWEMIPPTILIDLLKKITDELAFDTSSDVR 280 (1005)
T ss_pred CCCccHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHHH----HHHHcCHHHHHHHHHHHHHHhhhccchhee
Confidence 222 22333343 3457899999999999999998888777642 2234444433333333 3333255788
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCC
Q 009636 346 KEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP 425 (530)
Q Consensus 346 ~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~ 425 (530)
......|..++..... -.+++ -++|.|-..|.+....||..+...|..+-... . ..+..---.+.++.-|...
T Consensus 281 ~svf~gl~~~l~np~s--h~~le-~~Lpal~~~l~D~se~VRvA~vd~ll~ik~vr---a-~~f~~I~~~d~~l~~L~~d 353 (1005)
T KOG1949|consen 281 CSVFKGLPMILDNPLS--HPLLE-QLLPALRYSLHDNSEKVRVAFVDMLLKIKAVR---A-AKFWKICPMDHILVRLETD 353 (1005)
T ss_pred hhHhcCcHHHHcCccc--hhHHH-HHHHhcchhhhccchhHHHHHHHHHHHHHhhh---h-hhhhccccHHHHHHHHhcc
Confidence 8888888888764221 12222 24566667778888899998888887774421 1 1112222244455555555
Q ss_pred ChHHHHHHHHHHH
Q 009636 426 DPRIVTVCLEGLE 438 (530)
Q Consensus 426 ~~~~~~~al~~l~ 438 (530)
+..+....+..|.
T Consensus 354 ~~~v~rr~~~li~ 366 (1005)
T KOG1949|consen 354 SRPVSRRLVSLIF 366 (1005)
T ss_pred ccHHHHHHHHHHH
Confidence 5554444444333
No 241
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.42 E-value=1.7 Score=40.28 Aligned_cols=146 Identities=16% Similarity=0.170 Sum_probs=102.6
Q ss_pred hchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhH
Q 009636 242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQ 321 (530)
Q Consensus 242 ~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~ 321 (530)
...+...+..|.+.|.+...+.+..+..++....+.....+. .++-.+++-+++....+-..||.+++.|...-.....
T Consensus 87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~ 165 (334)
T KOG2933|consen 87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSID 165 (334)
T ss_pred HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555667788888889999999999998776654444444 5667778888888889999999999999875554433
Q ss_pred HHhhcCchHHHHHhhcC-C-C-chhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhh
Q 009636 322 CVIEYQALPCLLNLLSG-N-Y-KKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNAT 398 (530)
Q Consensus 322 ~~~~~~~l~~L~~lL~~-~-~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~ 398 (530)
.. +..++..|.+ . + +.-|+..|-.+|..+..+-..+ .+++.|+..+....+.++..++.++.+..
T Consensus 166 ~~-----ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 166 QE-----LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred HH-----HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhhchhhhhhhhccccccc
Confidence 32 2233333322 1 1 4568888889998887643221 36677888888889999999988887776
Q ss_pred cC
Q 009636 399 SG 400 (530)
Q Consensus 399 ~~ 400 (530)
..
T Consensus 234 ~r 235 (334)
T KOG2933|consen 234 IR 235 (334)
T ss_pred ee
Confidence 54
No 242
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=92.41 E-value=1.3 Score=47.18 Aligned_cols=136 Identities=20% Similarity=0.238 Sum_probs=80.4
Q ss_pred chHHHHHHhhcC----CChhHHHHHHHHHHHhccC---Ch------HHHHHHHHhCcHHHHHHhhC----CCCchhHHHH
Q 009636 243 PALPALAHLIHS----NDDEVLTDACWALSYLSDG---TN------DKIQAVIEAGVFPRLAEFLM----HPSPSVLIPA 305 (530)
Q Consensus 243 ~~l~~L~~ll~~----~d~~v~~~a~~~l~~l~~~---~~------~~~~~~~~~~~l~~L~~lL~----~~~~~~~~~a 305 (530)
..+..+..++.+ .++.+...++.+++.+... .. ......+...+++.+...+. ..+...+..+
T Consensus 431 e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 510 (618)
T PF01347_consen 431 ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVY 510 (618)
T ss_dssp HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHH
Confidence 344445555543 3456777777777776522 10 00011122245566665554 4566778889
Q ss_pred HHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCC--CchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC-
Q 009636 306 LRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN--YKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA- 382 (530)
Q Consensus 306 l~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~- 382 (530)
+++|||+.. + ..++.|..++... ....+|..|+|+|..++...++. +.+.|+.++.+.
T Consensus 511 LkaLgN~g~--~---------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~--------v~~~l~~I~~n~~ 571 (618)
T PF01347_consen 511 LKALGNLGH--P---------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK--------VREILLPIFMNTT 571 (618)
T ss_dssp HHHHHHHT---G---------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH--------HHHHHHHHHH-TT
T ss_pred HHHhhccCC--c---------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH--------HHHHHHHHhcCCC
Confidence 999999964 1 3466677777654 25789999999999997766654 445667776554
Q ss_pred -chhHHHHHHHHHHHh
Q 009636 383 -EFDIKKEAAWAISNA 397 (530)
Q Consensus 383 -~~~v~~~a~~aL~nl 397 (530)
+.++|..|..+|...
T Consensus 572 e~~EvRiaA~~~lm~~ 587 (618)
T PF01347_consen 572 EDPEVRIAAYLILMRC 587 (618)
T ss_dssp S-HHHHHHHHHHHHHT
T ss_pred CChhHHHHHHHHHHhc
Confidence 688999888777653
No 243
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=92.41 E-value=30 Score=41.35 Aligned_cols=264 Identities=13% Similarity=0.067 Sum_probs=138.8
Q ss_pred CCChHHHHHHHHHHHHhhcCCC--CCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCCh
Q 009636 84 SNDSGVQYECTTQFRKLLSIER--SPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAV 161 (530)
Q Consensus 84 s~~~~~~~~a~~~l~~l~~~~~--~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i 161 (530)
+.+..+...|+..|++++...- .+....-.+..++..|..++....+.+++...+.|+.++...... -+.+| =
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~----nIkSG-W 1222 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVN----NVKSG-W 1222 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh----hhhcC-c
Confidence 3456788889998888765421 111111224456788888777665689999999999998873222 22334 3
Q ss_pred HHHHHhh----CCCCHHHHHHHHHHHHhhhCCCchh-----hhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhh---
Q 009636 162 PIFVKLL----YSPSDDVREQAVWALGNIAGDSPRC-----RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF--- 229 (530)
Q Consensus 162 ~~L~~ll----~~~~~~i~~~a~~~L~nl~~~~~~~-----~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L--- 229 (530)
+.+..++ ...++.+...|..++..|+.+.-.. ...+. .++..+........+.++--.|+..|+++
T Consensus 1223 ktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~--DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~ 1300 (1780)
T PLN03076 1223 KSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFT--DCVNCLIAFTNSRFNKDISLNAIAFLRFCATK 1300 (1780)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHH--HHHHHHHHHHhCcCcccccHHHHHHHHHHHHH
Confidence 3333443 3467888888988888876442110 01111 13344444443333344444444444433
Q ss_pred -ccCC----------C--------------C-----CChhhhhchHHH---HHHhhcCCChhHHHHHHHHHHHhccC---
Q 009636 230 -CRGK----------P--------------Q-----PPFDQVSPALPA---LAHLIHSNDDEVLTDACWALSYLSDG--- 273 (530)
Q Consensus 230 -~~~~----------~--------------~-----~~~~~~~~~l~~---L~~ll~~~d~~v~~~a~~~l~~l~~~--- 273 (530)
+... . . ........-+|. |..+...+..+|+..|+.+|..+...
T Consensus 1301 La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~ 1380 (1780)
T PLN03076 1301 LAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGH 1380 (1780)
T ss_pred HHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhc
Confidence 1110 0 0 000001223344 44445567899999999988776532
Q ss_pred --ChHHHHHHHHhCcHHHHHHhhCCC-------------------C-----c--hhHHHHHHHHhHhhcCCchhhHHHhh
Q 009636 274 --TNDKIQAVIEAGVFPRLAEFLMHP-------------------S-----P--SVLIPALRTVGNIVTGDDMQTQCVIE 325 (530)
Q Consensus 274 --~~~~~~~~~~~~~l~~L~~lL~~~-------------------~-----~--~~~~~al~~L~nl~~~~~~~~~~~~~ 325 (530)
+.+.-..++. +++-.++..++.. + | .....|++.+..+....-..... +-
T Consensus 1381 ~Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~-~L 1458 (1780)
T PLN03076 1381 LFSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNP-LL 1458 (1780)
T ss_pred cCCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 2222233333 4555555444310 0 1 12233444444444322111111 22
Q ss_pred cCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009636 326 YQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (530)
Q Consensus 326 ~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 357 (530)
.+++..|..++..+ +..+-+.++.+|.++..
T Consensus 1459 ~~~l~ll~~ci~q~-n~~la~ig~~~l~~li~ 1489 (1780)
T PLN03076 1459 KKVLMLLVSFIKRP-HQSLAGIGIAAFVRLMS 1489 (1780)
T ss_pred HHHHHHHHHHHcCc-hHHHHHHHHHHHHHHHH
Confidence 35566666666666 77888888888888876
No 244
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.40 E-value=5.4 Score=44.64 Aligned_cols=113 Identities=14% Similarity=0.151 Sum_probs=57.8
Q ss_pred HHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccC----------------CCChHHHHHHHHHHH
Q 009636 375 LVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV----------------CPDPRIVTVCLEGLE 438 (530)
Q Consensus 375 L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~----------------~~~~~~~~~al~~l~ 438 (530)
|.++..++-++||..|+.++..+............++.-+...+..+|+ ....+.....+.++.
T Consensus 1002 L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIa 1081 (1610)
T KOG1848|consen 1002 LADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIA 1081 (1610)
T ss_pred HHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHH
Confidence 3344444455666666666655554222122222222223333344443 222334455666666
Q ss_pred HHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009636 439 NILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETY 493 (530)
Q Consensus 439 ~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~ 493 (530)
+++...-+.-. ..|.+....++. ++.+..+..+.++++.-.|...+++.
T Consensus 1082 klf~e~fk~ll----nln~f~~vwe~l--l~flkrl~s~~s~e~slsai~~~qel 1130 (1610)
T KOG1848|consen 1082 KLFSENFKLLL----NLNGFLDVWEEL--LQFLKRLHSDISPEISLSAIKALQEL 1130 (1610)
T ss_pred HHHHHHHHHHH----hcccHHHHHHHH--HHHHHHHHhcCChHhHHHHHHHHHHH
Confidence 66644322211 133345444432 56677777889999988888887774
No 245
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=92.38 E-value=0.55 Score=35.53 Aligned_cols=73 Identities=18% Similarity=0.164 Sum_probs=58.5
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChh
Q 009636 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE 150 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~ 150 (530)
.+...+..+.++.+.+|-.|+..|++++... + ....-..+++..+...|++++ +-+-..|+.+|..++...++
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~-~--~~~~~~~~il~l~l~~L~d~D-syVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESK-S--EPVIDIPKILDLFLSQLKDED-SYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcC-C--cchhhHHHHHHHHHHHcCCCC-chHHHHHHHHHHHHHHHChH
Confidence 5678888899999999999999999999774 3 111112567888889999988 89999999999999985554
No 246
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=92.37 E-value=0.46 Score=39.47 Aligned_cols=75 Identities=16% Similarity=0.211 Sum_probs=60.4
Q ss_pred ChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcC-CCHHHHHHHHHHHHH
Q 009636 414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTH-DNAEIYEKSVKLLET 492 (530)
Q Consensus 414 ~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~-~~~~v~~~a~~il~~ 492 (530)
++..|..-+.+.++.++..++..|..+++.+.. .|...+...+.++.|..+... .++.|++++..+|+.
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~----------~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~ 107 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGK----------RFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQ 107 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCH----------HHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 566777777889999999999999999987644 256667777888888888666 899999999999999
Q ss_pred hCCCCC
Q 009636 493 YWLDDE 498 (530)
Q Consensus 493 ~~~~~~ 498 (530)
|-....
T Consensus 108 W~~~f~ 113 (144)
T cd03568 108 WADEFK 113 (144)
T ss_pred HHHHhC
Confidence 855443
No 247
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=92.36 E-value=10 Score=38.11 Aligned_cols=262 Identities=11% Similarity=0.068 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCch-hhh--hHhhcCChHHH
Q 009636 131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPR-CRD--LVLSQGGLVPL 206 (530)
Q Consensus 131 ~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~-~~~--~i~~~~~i~~L 206 (530)
+.+.....+++..+-.+-......+++. ++..+....++ .++..-.....+|+.+...... ... .-++...+|++
T Consensus 44 eylMk~iMRvl~~~~e~~~p~~~~il~~-L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f 122 (435)
T PF03378_consen 44 EYLMKCIMRVLSVLQEDILPIAVEILQH-LTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPF 122 (435)
T ss_dssp HHHHHHHHHHHHHSTTTTGGGHHHHHHH-HHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Confidence 4555555555555444333333333321 23333333444 4566655555566555432111 111 12344467777
Q ss_pred HHhhcCCCchhHHHHHHHHhhhhccCCC-CCChhhhhchHHHHHHhhc-CCChhHHHHHHHHHHHhccCChHHHHHHHHh
Q 009636 207 LAQLNGQPKLSMLRNATWTLSNFCRGKP-QPPFDQVSPALPALAHLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEA 284 (530)
Q Consensus 207 l~ll~~~~~~~~~~~a~~~L~~L~~~~~-~~~~~~~~~~l~~L~~ll~-~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~ 284 (530)
..+| ...-.+..-++...++.|.+..+ .........++|.|+.-.- .....+ -...+.|..........+ ...
T Consensus 123 ~~IL-q~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gni-PalvrLL~a~i~k~~~~i---~~~ 197 (435)
T PF03378_consen 123 QEIL-QQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNI-PALVRLLQAYIKKDPSFI---VAN 197 (435)
T ss_dssp HHHH-HTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTH-HHHHHHHHHHHHHHGGG-------
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCc-CcHHHHHHHHHHhCchhh---cch
Confidence 7777 44556777777777777776654 2222233444444432211 111111 222223322222211111 111
Q ss_pred ----CcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CC
Q 009636 285 ----GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GN 359 (530)
Q Consensus 285 ----~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~ 359 (530)
+++...-+++.+...+ ..+...|..+....+...-.-.-..++..++.-|++.......+.-+..++.++. .+
T Consensus 198 ~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g 275 (435)
T PF03378_consen 198 NQLEPILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYG 275 (435)
T ss_dssp S-CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-
T ss_pred hhHHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcC
Confidence 2333334455554322 4466677777655443210001124556666666655456666666666666654 34
Q ss_pred HHHHHHHHH---hCcHHHHHHH--H---hc-CchhHHHHHHHHHHHhhcC
Q 009636 360 REQIQAVIE---ANIIGPLVAL--L---EN-AEFDIKKEAAWAISNATSG 400 (530)
Q Consensus 360 ~~~~~~l~~---~~~i~~L~~l--l---~~-~~~~v~~~a~~aL~nl~~~ 400 (530)
++..-..++ .|+...++.- + .. ..+.-|+-++.+++++...
T Consensus 276 ~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~e 325 (435)
T PF03378_consen 276 PDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCE 325 (435)
T ss_dssp HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhc
Confidence 444433332 4555555542 1 11 1233466666667776653
No 248
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=92.31 E-value=9.8 Score=38.39 Aligned_cols=165 Identities=12% Similarity=0.069 Sum_probs=112.2
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCc----hhHHHHHHHHhHhhcCCchhh
Q 009636 245 LPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSP----SVLIPALRTVGNIVTGDDMQT 320 (530)
Q Consensus 245 l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~----~~~~~al~~L~nl~~~~~~~~ 320 (530)
...+...+.+++...+..++..+..++... .....++....+..|.+++.++.. .+...++++++.+....- ..
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~-~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-vs 162 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDP-TFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-VS 162 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccH-HHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-ee
Confidence 345666777777776677888888877544 456778888889999999988653 455666666666654222 11
Q ss_pred HHHhhcCchHHHHHhhcCC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009636 321 QCVIEYQALPCLLNLLSGN-YKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS 399 (530)
Q Consensus 321 ~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 399 (530)
...+...++.....+..-. .+..+-..|...|-++..+++...+.+.+.--+..|+..++..+..++..|...+..+..
T Consensus 163 W~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~ 242 (713)
T KOG2999|consen 163 WESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR 242 (713)
T ss_pred eeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 1122223333344443221 145677788888888888887777777777789999999999999999998888888887
Q ss_pred CCCHHHHHHHHH
Q 009636 400 GGTHEQIKFLVI 411 (530)
Q Consensus 400 ~~~~~~~~~l~~ 411 (530)
.+.++.++.+.+
T Consensus 243 ~a~~~~R~~~~~ 254 (713)
T KOG2999|consen 243 KAPDDKRFEMAK 254 (713)
T ss_pred hCChHHHHHHHH
Confidence 776665555443
No 249
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=92.25 E-value=13 Score=36.89 Aligned_cols=191 Identities=19% Similarity=0.252 Sum_probs=116.2
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhhhCCCc---hhhhhHhhcCChHHHHHhhc------CCCchhHHHHHHHHhhhhccCC
Q 009636 163 IFVKLLYSPSDDVREQAVWALGNIAGDSP---RCRDLVLSQGGLVPLLAQLN------GQPKLSMLRNATWTLSNFCRGK 233 (530)
Q Consensus 163 ~L~~ll~~~~~~i~~~a~~~L~nl~~~~~---~~~~~i~~~~~i~~Ll~ll~------~~~~~~~~~~a~~~L~~L~~~~ 233 (530)
.+..++...+.+-+-.++.....++...+ ..++.+.+.-+.+.+-+++. +.++.-.+..++..|..+|+..
T Consensus 15 ~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p 94 (698)
T KOG2611|consen 15 DCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP 94 (698)
T ss_pred hHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence 35556666666667777777778775443 23445666555666666663 2235556667788899999987
Q ss_pred CCCChhhhhchHHHHHHhhcCC-Chh------HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchh-HHHH
Q 009636 234 PQPPFDQVSPALPALAHLIHSN-DDE------VLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSV-LIPA 305 (530)
Q Consensus 234 ~~~~~~~~~~~l~~L~~ll~~~-d~~------v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~-~~~a 305 (530)
.-......-.-+|.|..++... |++ +..++..++..++..... .+.++..|.++.+.++-.-.+... ..-+
T Consensus 95 ElAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G-~~~Lia~G~~~~~~Q~y~~~~~~~d~ala 173 (698)
T KOG2611|consen 95 ELASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAG-LMTLIASGGLRVIAQMYELPDGSHDMALA 173 (698)
T ss_pred hhccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCch-hHHHHhcCchHHHHHHHhCCCCchhHHHH
Confidence 6555566667788888888643 333 778888899888877544 466888899999998755443322 2223
Q ss_pred HHHHhHhhcCCchhh---HHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009636 306 LRTVGNIVTGDDMQT---QCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (530)
Q Consensus 306 l~~L~nl~~~~~~~~---~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 357 (530)
+.++--...+.+... ..+. .++..+..=+... +...+.+.|..|+.+..
T Consensus 174 l~Vlll~~~~~~cw~e~~~~fl--ali~~va~df~~~-~~a~KfElc~lL~~vl~ 225 (698)
T KOG2611|consen 174 LKVLLLLVSKLDCWSETIERFL--ALIAAVARDFAVL-HNALKFELCHLLSAVLS 225 (698)
T ss_pred HHHHHHHHHhcccCcCCHHHHH--HHHHHHHHHHHHh-hhHHHHHHHHHHHHHHh
Confidence 333332332222111 1111 1133333333444 56678899999987655
No 250
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=92.17 E-value=1.3 Score=37.85 Aligned_cols=112 Identities=18% Similarity=0.179 Sum_probs=79.9
Q ss_pred CcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhh--cCchHHHHHhhcCCCchhHHHHHHHHHHHHhc---CC
Q 009636 285 GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIE--YQALPCLLNLLSGNYKKSIKKEACWTVSNITA---GN 359 (530)
Q Consensus 285 ~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~--~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~---~~ 359 (530)
..+.++..+|.+.++.-+..++..+..++..++.. .+.+ ...+..++.+|+....+.+++.++.++..+.. +.
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e--~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWE--ILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 56678899999999989999999998888765322 2322 34688888999887567888999999999875 45
Q ss_pred HHHHHHHHH---hCcHHHHHHHHhcCchhHHHHHHHHHHHhhcC
Q 009636 360 REQIQAVIE---ANIIGPLVALLENAEFDIKKEAAWAISNATSG 400 (530)
Q Consensus 360 ~~~~~~l~~---~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 400 (530)
++..+.+.. .++++.++.+++. ......++.+|..+...
T Consensus 103 p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~ 144 (165)
T PF08167_consen 103 PTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPH 144 (165)
T ss_pred CchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence 554555443 2356666666654 46777788888777663
No 251
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.14 E-value=29 Score=40.70 Aligned_cols=274 Identities=14% Similarity=0.133 Sum_probs=143.9
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC-CCCChh
Q 009636 161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFD 239 (530)
Q Consensus 161 i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~ 239 (530)
+..+..-+..+++..+..+..+++.++..-+.. . .-.+..+.+++-+....|+-.+..-..++..+-++. ......
T Consensus 878 ~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~--~-f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~q 954 (2067)
T KOG1822|consen 878 LTLIVNSLINPNPKLRCAAAEALARLAQVVGSA--P-FVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQ 954 (2067)
T ss_pred HHHHhhhhccCChHHHHHHHHHHHHHHHhcccc--c-hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCch
Confidence 344455555678888888888888888543321 1 112245566677756667766767777777777775 233334
Q ss_pred hhhchHHHHHHhhcCC-ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCc---hhHH------------
Q 009636 240 QVSPALPALAHLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSP---SVLI------------ 303 (530)
Q Consensus 240 ~~~~~l~~L~~ll~~~-d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~---~~~~------------ 303 (530)
.....+..+..+..++ ++.|+..++.++..+.+.........+. -.+..+..+|-+..+ ++..
T Consensus 955 hl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve-~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~ 1033 (2067)
T KOG1822|consen 955 HLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVE-PTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDE 1033 (2067)
T ss_pred hcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHH-HHHHHHHHHcCCCCcchhhhhhhhccccccchhH
Confidence 4456677777776655 5699999999999988665433333333 233444444433221 1111
Q ss_pred -HHHHHHhHhhcCCch-hhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhc
Q 009636 304 -PALRTVGNIVTGDDM-QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLEN 381 (530)
Q Consensus 304 -~al~~L~nl~~~~~~-~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~ 381 (530)
....++|+=..++.. ..-..+..-.+-...-++.++ ++.++.++..++-++-...+.+... .-+++.|+.++.+
T Consensus 1034 ~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~-d~lnqa~ai~clqqlhlFapr~~n~---~~lV~~L~~~l~s 1109 (2067)
T KOG1822|consen 1034 DALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHS-DPLNQAAAIKCLQQLHLFAPRHVNL---DSLVLQLCSLLSS 1109 (2067)
T ss_pred HHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHhhcchhccH---HHHHHHHHHHhcc
Confidence 122233332222221 111112222333344445555 8888888888888876543332211 1245666666655
Q ss_pred CchhHHHHHHHHHHHhhcCCCHHHHH----------------H-HH-HcCChHHHHhccC-CCChHHHHHHHHHHHHHHH
Q 009636 382 AEFDIKKEAAWAISNATSGGTHEQIK----------------F-LV-IQGCIKPLCDLLV-CPDPRIVTVCLEGLENILK 442 (530)
Q Consensus 382 ~~~~v~~~a~~aL~nl~~~~~~~~~~----------------~-l~-~~~~i~~L~~lL~-~~~~~~~~~al~~l~~ll~ 442 (530)
.-.-.|.....++..+......+.+. . .. +.|.=-.+..+++ ..|.+++..+++.+.+++.
T Consensus 1110 ~~~i~r~~~~~clrql~~Re~sev~e~a~~L~~~~~~e~~~d~~~~pe~gLeg~l~~mld~e~d~~l~~~I~~tl~~~~~ 1189 (2067)
T KOG1822|consen 1110 SYLILRRASFSCLRQLVQREASEVCEYAQLLAKTLAVETSPDANIRPEAGLEGALFIMLDTETDNKLLKNILETLSRMLN 1189 (2067)
T ss_pred hhhhhhhhHHhhhhHHhHHHHHHHHHHHHHhhhhhhhhhChhhhcCccccchHHHHHHcCCchHHHHHHHHHHHHHHHHH
Confidence 44334444444444433322111100 0 11 2333333444454 4466677777777777543
No 252
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=92.08 E-value=2.6 Score=42.58 Aligned_cols=99 Identities=18% Similarity=0.160 Sum_probs=72.0
Q ss_pred CcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc--CCHHH
Q 009636 285 GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA--GNREQ 362 (530)
Q Consensus 285 ~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~ 362 (530)
|++..++.-+.+.+..++..++.+|+.++..-.+ .+..+-.+++..|.+-+-+. .+.||.+|..+|+.+-. +++++
T Consensus 91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e-IDe~l~N~L~ekl~~R~~DR-E~~VR~eAv~~L~~~Qe~~~neen 168 (885)
T COG5218 91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE-IDEVLANGLLEKLSERLFDR-EKAVRREAVKVLCYYQEMELNEEN 168 (885)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhccCChHH
Confidence 7778888888889999999999999988753332 33455567788888877777 89999999999999865 34443
Q ss_pred HHHHHHhCcHHHHHHHHhcC-chhHHHHHHH
Q 009636 363 IQAVIEANIIGPLVALLENA-EFDIKKEAAW 392 (530)
Q Consensus 363 ~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~ 392 (530)
.+...|..+++.+ +.+||..|+.
T Consensus 169 -------~~~n~l~~~vqnDPS~EVRr~all 192 (885)
T COG5218 169 -------RIVNLLKDIVQNDPSDEVRRLALL 192 (885)
T ss_pred -------HHHHHHHHHHhcCcHHHHHHHHHH
Confidence 2334555566544 5678876643
No 253
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=91.95 E-value=13 Score=36.41 Aligned_cols=132 Identities=12% Similarity=0.113 Sum_probs=76.6
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHH-h--cCchhHHHHHHHHHHHhhcCCCH-----------HHHH
Q 009636 342 KSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALL-E--NAEFDIKKEAAWAISNATSGGTH-----------EQIK 407 (530)
Q Consensus 342 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll-~--~~~~~v~~~a~~aL~nl~~~~~~-----------~~~~ 407 (530)
..-|..|+..|..++.........++. +.+..++.-. . ..+++-+..|+..++.++..+.. -...
T Consensus 225 ~TrR~AA~dfl~~L~~~~~~~v~~i~~-~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~ 303 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFEKQVTSILM-QYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVV 303 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HH
T ss_pred CCcHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHH
Confidence 456778888888888654444433332 1233332211 1 23678899999999999886521 0345
Q ss_pred HHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHH
Q 009636 408 FLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSV 487 (530)
Q Consensus 408 ~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~ 487 (530)
.+....+++.|. --.+..|-++..|++.+..+-...+.. .+ .+.+..+.....+++.-|+..|.
T Consensus 304 ~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~-------------~l--~~~~~~l~~~L~~~~~vv~tyAA 367 (370)
T PF08506_consen 304 DFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKE-------------QL--LQIFPLLVNHLQSSSYVVHTYAA 367 (370)
T ss_dssp HHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HH-------------HH--HHHHHHHHHHTTSS-HHHHHHHH
T ss_pred HHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHH-------------HH--HHHHHHHHHHhCCCCcchhhhhh
Confidence 555666666665 222455667777777666554443321 11 34567888888999999998887
Q ss_pred HHH
Q 009636 488 KLL 490 (530)
Q Consensus 488 ~il 490 (530)
..|
T Consensus 368 ~~i 370 (370)
T PF08506_consen 368 IAI 370 (370)
T ss_dssp HHH
T ss_pred hhC
Confidence 543
No 254
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=91.93 E-value=1.9 Score=36.87 Aligned_cols=116 Identities=12% Similarity=0.120 Sum_probs=79.3
Q ss_pred cCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH--hCcHHHHHHHHhcC-chhHHHHHHHHHHHhhcC--
Q 009636 326 YQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIE--ANIIGPLVALLENA-EFDIKKEAAWAISNATSG-- 400 (530)
Q Consensus 326 ~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~--~~~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~~-- 400 (530)
......+..+|++. ++.-|..++..+.-.+..++. ..+.+ ...+..|+.+++.. .+.+++.++.++..+...
T Consensus 24 ~~l~~ri~~LL~s~-~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 24 HKLVTRINSLLQSK-SAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHHHHHHHhCCC-ChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 35667788899888 888888888888887765422 12222 23678888888876 467888888888888752
Q ss_pred CCHHHHHHHHHc---CChHHHHhccCCCChHHHHHHHHHHHHHHHhhhh
Q 009636 401 GTHEQIKFLVIQ---GCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEA 446 (530)
Q Consensus 401 ~~~~~~~~l~~~---~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~ 446 (530)
+.++..+.+... +++..++.+++. ......++++|..++...+.
T Consensus 101 ~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~pt 147 (165)
T PF08167_consen 101 GKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPT 147 (165)
T ss_pred CCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCc
Confidence 244544444432 345556665554 56777899999999987765
No 255
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=91.77 E-value=14 Score=38.16 Aligned_cols=290 Identities=13% Similarity=0.157 Sum_probs=152.3
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009636 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 153 (530)
.+..+=+.+.++++.+.--|+-.+.-..++-.++ + .-++..|.+.+++++ ..++..|+.-|+-.-+++ +++
T Consensus 416 gL~qldkylys~~~~ikaGaLLgigi~~~gv~ne-~-----dpalALLsdyv~~~~-s~~ri~aIlGLglayaGs--q~e 486 (878)
T KOG2005|consen 416 GLEQLDKYLYSDESYIKAGALLGIGISNSGVFNE-C-----DPALALLSDYLQSSS-SIHRIGAILGLGLAYAGS--QRE 486 (878)
T ss_pred hHHHHHHHhhcCCchhhhccceeeeeeccccccc-c-----CHHHHHHHHhccCCC-ceeehHHhhhhHHhhcCC--chH
Confidence 4445555566666666655554444222221110 1 123455677777777 677777777776655533 222
Q ss_pred HHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009636 154 VVIDHGAVPIFVKLLYSP--SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (530)
Q Consensus 154 ~~~~~g~i~~L~~ll~~~--~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~ 231 (530)
.+. ..|..++.+. ..++...|..+|+.+...+.. .. +...+++.++..-.........+.....|.-+.-
T Consensus 487 ~V~-----~lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn--~d-vts~ilqtlmekse~El~d~~~RFL~LGL~llfl 558 (878)
T KOG2005|consen 487 EVL-----ELLSPIMFDTKSPMEVVAFASLSLGMIFVGSCN--ED-VTSSILQTLMEKSETELEDQWFRFLALGLALLFL 558 (878)
T ss_pred HHH-----HHHhHHhcCCCCchhHHHHHHhhcceeEEecCC--hH-HHHHHHHHHHHhhhhhhhchHHHHHHHHHHHHHh
Confidence 222 1455556553 345777777777777643321 11 1122455555543222234444554445554444
Q ss_pred CCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCC---chhHHHHHHH
Q 009636 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS---PSVLIPALRT 308 (530)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~---~~~~~~al~~ 308 (530)
+.. ..+...+..+..-...+...+-..+..++.....+.-.+-+ ..+..+..... ......|+.-
T Consensus 559 gkq--------e~~d~~~e~~~~i~~~~~~~~~~lv~~caYaGTGnvl~Iq~----q~ll~~cgE~~~~~e~~~~~avLg 626 (878)
T KOG2005|consen 559 GKQ--------ESVDAVVETIKAIEGPIRKHESILVKSCAYAGTGNVLKIQS----QLLLSFCGEHDADLESEQELAVLG 626 (878)
T ss_pred ccc--------chHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCceEEech----hhhhhhcCCCccchhhhccchhhh
Confidence 432 11222222222222223322222222222111111110000 12222222211 1223356666
Q ss_pred HhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHH
Q 009636 309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKK 388 (530)
Q Consensus 309 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~ 388 (530)
++-++.+.+-..+. .+..+-.+|..+ ++.+|+..-.+++-++..+|.. +++..|-+...+.|.++..
T Consensus 627 iAliAMgeeig~eM-----~lR~f~h~l~yg-e~~iRravPLal~llsvSNPq~-------~vlDtLsk~shd~D~eva~ 693 (878)
T KOG2005|consen 627 IALIAMGEEIGSEM-----VLRHFGHLLHYG-EPHIRRAVPLALGLLSVSNPQV-------NVLDTLSKFSHDGDLEVAM 693 (878)
T ss_pred hhhhhhhhhhhhHH-----HHHHHHHHHHcC-CHHHHHHHHHHHhhhccCCCcc-------hHHHHHHHhccCcchHHHH
Confidence 66666666544433 355677888888 9999999999999998877653 5788999999999999999
Q ss_pred HHHHHHHHhhcCCCHHH
Q 009636 389 EAAWAISNATSGGTHEQ 405 (530)
Q Consensus 389 ~a~~aL~nl~~~~~~~~ 405 (530)
.++.+++-+-.+.+...
T Consensus 694 naIfamGLiGAGTnNAR 710 (878)
T KOG2005|consen 694 NAIFAMGLIGAGTNNAR 710 (878)
T ss_pred HHHHHhccccCCcchHH
Confidence 99999998877654433
No 256
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=91.68 E-value=11 Score=34.95 Aligned_cols=222 Identities=13% Similarity=0.098 Sum_probs=131.6
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcC-CCchhHHHHHHHHhhhhccCCCCCChhh
Q 009636 162 PIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG-QPKLSMLRNATWTLSNFCRGKPQPPFDQ 240 (530)
Q Consensus 162 ~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~ 240 (530)
..|-..|.++++.+|..|+.+|+.+...-+.. .+...-+..|+..+.+ -.|......++.++..|.... ......
T Consensus 2 ~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~-~~~~~~ 77 (262)
T PF14500_consen 2 QSLGEYLTSEDPIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMK-NFSPES 77 (262)
T ss_pred cchhhhhCCCCHHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCc-CCChhh
Confidence 34556778889999999999999888665521 1222234555554421 135556666677777777443 222222
Q ss_pred hhchHHHHHHhhc--CCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC-CchhHHHHHHHHhHhhcCCc
Q 009636 241 VSPALPALAHLIH--SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP-SPSVLIPALRTVGNIVTGDD 317 (530)
Q Consensus 241 ~~~~l~~L~~ll~--~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~~~~al~~L~nl~~~~~ 317 (530)
...++..+.+-.. +.-...+..+...+..+........+ -...+++..+++.+..+ +|.....+...+..+...-+
T Consensus 78 ~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~-~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~ 156 (262)
T PF14500_consen 78 AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQ-SMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD 156 (262)
T ss_pred HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHH-hchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence 3334444433222 22356777788888888766443332 22336778888888764 67777777777777765433
Q ss_pred hhhHHHhhcCchHHHHHhhcC--------CC-ch-h-HHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhH
Q 009636 318 MQTQCVIEYQALPCLLNLLSG--------NY-KK-S-IKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDI 386 (530)
Q Consensus 318 ~~~~~~~~~~~l~~L~~lL~~--------~~-~~-~-v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v 386 (530)
. ....+.+...+.. +. ++ . .+..-...|.+....++.. ..-.+|.|++-|.++.+.+
T Consensus 157 ~-------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~f-----a~~~~p~LleKL~s~~~~~ 224 (262)
T PF14500_consen 157 I-------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLF-----APFAFPLLLEKLDSTSPSV 224 (262)
T ss_pred c-------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhh-----HHHHHHHHHHHHcCCCcHH
Confidence 1 2233334444321 11 22 1 2334444555554444432 2247899999999999999
Q ss_pred HHHHHHHHHHhhcC
Q 009636 387 KKEAAWAISNATSG 400 (530)
Q Consensus 387 ~~~a~~aL~nl~~~ 400 (530)
+..++.+|..++..
T Consensus 225 K~D~L~tL~~c~~~ 238 (262)
T PF14500_consen 225 KLDSLQTLKACIEN 238 (262)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988764
No 257
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=91.67 E-value=23 Score=38.57 Aligned_cols=115 Identities=16% Similarity=0.167 Sum_probs=70.6
Q ss_pred cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhc
Q 009636 371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNL 450 (530)
Q Consensus 371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~ 450 (530)
+-..+...+..+++.+-...+.++.++..-......+ ...-++.-..-.+..-..+...+..+|.++....+
T Consensus 442 lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~---~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~----- 513 (727)
T PF12726_consen 442 LWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK---EKDELDPAKTQFNKSLGQITDLISQILERLSDFDP----- 513 (727)
T ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc---cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCH-----
Confidence 3445666666777888888888888887642111100 00011111111111112234444555555555533
Q ss_pred CCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCC
Q 009636 451 GNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDE 498 (530)
Q Consensus 451 ~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~~~~ 498 (530)
.....++.+.+....+-.+.-|+++++|+.|.+++...|+.+.
T Consensus 514 -----~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~ 556 (727)
T PF12726_consen 514 -----SHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDG 556 (727)
T ss_pred -----HHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCc
Confidence 3367888889999999999999999999999999999997433
No 258
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=91.67 E-value=1.2 Score=36.79 Aligned_cols=74 Identities=9% Similarity=-0.054 Sum_probs=61.4
Q ss_pred cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCC------CChHHHHHHHHHHHHHHHhh
Q 009636 371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC------PDPRIVTVCLEGLENILKVG 444 (530)
Q Consensus 371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~------~~~~~~~~al~~l~~ll~~~ 444 (530)
.+..+.+-+.++++.++..|+..|-.++.++...+...+.+.+++..|+.++.. .++.|+..++..+...-...
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 118 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLEL 118 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 566777788899999999999999999998888888888888999999999953 46789988888777665443
No 259
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=91.64 E-value=4.8 Score=34.89 Aligned_cols=144 Identities=14% Similarity=0.192 Sum_probs=89.7
Q ss_pred hHHHHHHHHhHhhcCCchhh-----HHHh-h-----cCc-hHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009636 301 VLIPALRTVGNIVTGDDMQT-----QCVI-E-----YQA-LPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIE 368 (530)
Q Consensus 301 ~~~~al~~L~nl~~~~~~~~-----~~~~-~-----~~~-l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 368 (530)
+|..|+.+|..++...+... ..++ + .+. .+.+-.++.++ ++.+|..|+.++..+..+........-+
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp-~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDP-SPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCC-chhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 57777888877776522110 1111 1 122 33344445556 9999999999999999886554443321
Q ss_pred h-------------------CcHHHHHHHHhcC-chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChH
Q 009636 369 A-------------------NIIGPLVALLENA-EFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPR 428 (530)
Q Consensus 369 ~-------------------~~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~ 428 (530)
. .+...|+..+..+ +..+....+.++..++.....+..+.=+-..++..+..++.+.|++
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 1 1234455555554 6778888999999998875433322101112345566677789999
Q ss_pred HHHHHHHHHHHHHHhhh
Q 009636 429 IVTVCLEGLENILKVGE 445 (530)
Q Consensus 429 ~~~~al~~l~~ll~~~~ 445 (530)
++..++.+++.++...+
T Consensus 161 v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 161 VRVAALSCLGALLSVQP 177 (182)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 99999999998876544
No 260
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=91.29 E-value=3.6 Score=35.62 Aligned_cols=141 Identities=18% Similarity=0.134 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHhcC-Chh----hHHHHHh------CCCh-HHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhh-
Q 009636 133 LQFEAAWALTNIASG-TSE----HTKVVID------HGAV-PIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLS- 199 (530)
Q Consensus 133 i~~~a~~~L~~l~~~-~~~----~~~~~~~------~g~i-~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~- 199 (530)
+|..|+.+|..++.. ++. ....++- .+.- +.+.-++.++++.+|..|+.+|..+..+...+-...-+
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 566777777777764 111 1111111 1122 33444556788999999999999887554322111110
Q ss_pred ------------------cCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCC--hhhhhchHHHHHHhhcCCChhH
Q 009636 200 ------------------QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP--FDQVSPALPALAHLIHSNDDEV 259 (530)
Q Consensus 200 ------------------~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~--~~~~~~~l~~L~~ll~~~d~~v 259 (530)
...-..|+..+....+..+...++.++..|....|... ......++..+..++.+.|.++
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v 161 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV 161 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence 11233455556566688888999999999998875433 3445666777777888999999
Q ss_pred HHHHHHHHHHhccC
Q 009636 260 LTDACWALSYLSDG 273 (530)
Q Consensus 260 ~~~a~~~l~~l~~~ 273 (530)
+..++.+++.+...
T Consensus 162 ~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 162 RVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHHHHcC
Confidence 99999998887654
No 261
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=90.98 E-value=1.4 Score=38.68 Aligned_cols=141 Identities=13% Similarity=0.152 Sum_probs=89.8
Q ss_pred HHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC----CHHHHHHHHHHHHHHhcCC-hhhHHHHHhCCChHHH
Q 009636 90 QYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED----YPQLQFEAAWALTNIASGT-SEHTKVVIDHGAVPIF 164 (530)
Q Consensus 90 ~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~----~~~i~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L 164 (530)
...|+..|.-++|. .+....+++..+--.+..+|...+ ..-++..++.+++.+...+ .+....+....++|..
T Consensus 117 vcnaL~lLQclaSh--Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLc 194 (315)
T COG5209 117 VCNALNLLQCLASH--PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLC 194 (315)
T ss_pred HHHHHHHHHHHhcC--cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHH
Confidence 34566666666654 333334445443223345554332 3467888999999998844 5666667778999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhc-------CChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009636 165 VKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQ-------GGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (530)
Q Consensus 165 ~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~-------~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~ 232 (530)
++++...++.-+..++.++..+.+++......+... .++..++..+-+.....+.+.++.+-..||..
T Consensus 195 LrIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~ 269 (315)
T COG5209 195 LRIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDK 269 (315)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCC
Confidence 999999888889999999999998876544332211 12233333332445566677777776666655
No 262
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=90.93 E-value=1.9 Score=37.77 Aligned_cols=93 Identities=12% Similarity=0.184 Sum_probs=66.7
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccC---------CCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhH
Q 009636 389 EAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV---------CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFT 459 (530)
Q Consensus 389 ~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~---------~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~ 459 (530)
..+..|.-.....+...++.|++.|++..|+++|. ..+......++.|+..++..... ..
T Consensus 83 ~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G-----------~~ 151 (187)
T PF06371_consen 83 KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYG-----------LE 151 (187)
T ss_dssp HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHH-----------HH
T ss_pred HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHH-----------HH
Confidence 33344444444445677888888888888888774 24557888899999888865533 46
Q ss_pred HHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHH
Q 009636 460 QMIDDAEGLEKIESLQTHDNAEIYEKSVKLLET 492 (530)
Q Consensus 460 ~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~ 492 (530)
..+...+++..|.....+++..++..|.+++.-
T Consensus 152 ~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~ 184 (187)
T PF06371_consen 152 AVLSHPDSVNLIALSLDSPNIKTRKLALEILAA 184 (187)
T ss_dssp HHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 677788999999999999999999999999864
No 263
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=90.90 E-value=2.8 Score=35.60 Aligned_cols=38 Identities=26% Similarity=0.301 Sum_probs=30.7
Q ss_pred CchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHH
Q 009636 327 QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQ 364 (530)
Q Consensus 327 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 364 (530)
.+++.|+.+|+.+.+..+|.++..+||.|.+-+|...+
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k 47 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHK 47 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHh
Confidence 46778888898886789999999999999886655443
No 264
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=90.83 E-value=1.3 Score=33.55 Aligned_cols=77 Identities=9% Similarity=0.095 Sum_probs=57.9
Q ss_pred hHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHH
Q 009636 329 LPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKF 408 (530)
Q Consensus 329 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~ 408 (530)
+...+..+.++ .+.+|..+...|..+..... ....--.+++..+...+.++|+-|-..|+.+|..++..........
T Consensus 5 ~~~al~~L~dp-~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~ 81 (92)
T PF10363_consen 5 LQEALSDLNDP-LPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPI 81 (92)
T ss_pred HHHHHHHccCC-CcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHH
Confidence 45566777777 88899999999999988544 1112224678888889999999999999999999998644334333
No 265
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=90.63 E-value=11 Score=34.87 Aligned_cols=214 Identities=18% Similarity=0.128 Sum_probs=118.5
Q ss_pred HHhhcCCChHHHHHHHHHHHHhhcCCC--CC-cHHHHH-----------HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 009636 79 VAGVWSNDSGVQYECTTQFRKLLSIER--SP-PIEEVI-----------RSGVVPRFVEFLLREDYPQLQFEAAWALTNI 144 (530)
Q Consensus 79 ~~~l~s~~~~~~~~a~~~l~~l~~~~~--~~-~~~~~~-----------~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l 144 (530)
+.+|.+..+..-..|+..+.+++..-+ .+ ..+.+. -.|+.+.+++=+.++. ....++..|..+
T Consensus 13 vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~---t~e~tl~lL~~L 89 (262)
T PF14225_consen 13 VACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSS---TYELTLRLLSRL 89 (262)
T ss_pred HHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCC---cHHHHHHHHHHH
Confidence 456677777777788888887776532 11 111111 1233333333333333 345556666666
Q ss_pred hcCC-------hhhHHHHHhCCChHHHHHhhCCCC----HHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcC-
Q 009636 145 ASGT-------SEHTKVVIDHGAVPIFVKLLYSPS----DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG- 212 (530)
Q Consensus 145 ~~~~-------~~~~~~~~~~g~i~~L~~ll~~~~----~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~- 212 (530)
+.-. ++.+-.+.-.+.+|.++..+.+++ ......++..|+.+|.... ...+..++....+
T Consensus 90 ~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~--------~~~La~il~~ya~~ 161 (262)
T PF14225_consen 90 TPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG--------LPNLARILSSYAKG 161 (262)
T ss_pred hcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC--------CccHHHHHHHHHhc
Confidence 5521 212222222345677777777765 1344556678888873321 1233444444422
Q ss_pred --CCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHH
Q 009636 213 --QPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRL 290 (530)
Q Consensus 213 --~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L 290 (530)
....+....++..+..-.. | ......+-.|+.++.+.-+.++..++..|..+...-+-... ...+++..+
T Consensus 162 ~fr~~~dfl~~v~~~l~~~f~--P----~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~--~~~dlispl 233 (262)
T PF14225_consen 162 RFRDKDDFLSQVVSYLREAFF--P----DHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP--HGADLISPL 233 (262)
T ss_pred CCCCHHHHHHHHHHHHHHHhC--c----hhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC--cchHHHHHH
Confidence 2234455555544443221 1 12345667788899888899999999999888765432222 445688889
Q ss_pred HHhhCCCCchhHHHHHHHHhHhhc
Q 009636 291 AEFLMHPSPSVLIPALRTVGNIVT 314 (530)
Q Consensus 291 ~~lL~~~~~~~~~~al~~L~nl~~ 314 (530)
.+++.++.+ ..|+.++-++..
T Consensus 234 lrlL~t~~~---~eAL~VLd~~v~ 254 (262)
T PF14225_consen 234 LRLLQTDLW---MEALEVLDEIVT 254 (262)
T ss_pred HHHhCCccH---HHHHHHHHHHHh
Confidence 999987754 455555554443
No 266
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=90.47 E-value=21 Score=38.06 Aligned_cols=196 Identities=17% Similarity=0.112 Sum_probs=106.9
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC----CCHHHHHHHHHHHHhhhCCCch
Q 009636 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS----PSDDVREQAVWALGNIAGDSPR 192 (530)
Q Consensus 117 ~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~----~~~~i~~~a~~~L~nl~~~~~~ 192 (530)
.+..+.+++.+.. --..+|++.|..+......-... .+..+..++.+ .++.++..|+.+++.+......
T Consensus 396 av~~i~~~I~~~~--~~~~ea~~~l~~l~~~~~~Pt~e-----~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~ 468 (618)
T PF01347_consen 396 AVKFIKDLIKSKK--LTDDEAAQLLASLPFHVRRPTEE-----LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV 468 (618)
T ss_dssp HHHHHHHHHHTT---S-HHHHHHHHHHHHHT-----HH-----HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCC--CCHHHHHHHHHHHHhhcCCCCHH-----HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence 3556667777644 12233555555554422122222 24556666654 4567888888888887631100
Q ss_pred ---------hhhhHhhcCChHHHHHhhc---CCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCC---Ch
Q 009636 193 ---------CRDLVLSQGGLVPLLAQLN---GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSN---DD 257 (530)
Q Consensus 193 ---------~~~~i~~~~~i~~Ll~ll~---~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~---d~ 257 (530)
..........++.+...+. ...+..-+..++.+|.|+-. ...++.+...+... +.
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~ 538 (618)
T PF01347_consen 469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPH 538 (618)
T ss_dssp T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-H
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccch
Confidence 1111222335666666664 34566778888999999853 34677888877765 67
Q ss_pred hHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC--CCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHh
Q 009636 258 EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH--PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNL 335 (530)
Q Consensus 258 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~l 335 (530)
.++..|++++..+....+..+ .+.+++++.+ .+.++|..|+.+|... ++.. ..+..+...
T Consensus 539 ~~R~~Ai~Alr~~~~~~~~~v--------~~~l~~I~~n~~e~~EvRiaA~~~lm~~---~P~~-------~~l~~i~~~ 600 (618)
T PF01347_consen 539 FIRVAAIQALRRLAKHCPEKV--------REILLPIFMNTTEDPEVRIAAYLILMRC---NPSP-------SVLQRIAQS 600 (618)
T ss_dssp HHHHHHHHTTTTGGGT-HHHH--------HHHHHHHHH-TTS-HHHHHHHHHHHHHT------H-------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHHH--------HHHHHHHhcCCCCChhHHHHHHHHHHhc---CCCH-------HHHHHHHHH
Confidence 899999999998876665433 3556666655 3466888877665432 2222 235566677
Q ss_pred hcCCCchhHHHH
Q 009636 336 LSGNYKKSIKKE 347 (530)
Q Consensus 336 L~~~~~~~v~~~ 347 (530)
+..+.+..|...
T Consensus 601 l~~E~~~QV~sf 612 (618)
T PF01347_consen 601 LWNEPSNQVASF 612 (618)
T ss_dssp HTT-S-HHHHHH
T ss_pred HhhCchHHHHHH
Confidence 766534555443
No 267
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.35 E-value=28 Score=37.17 Aligned_cols=151 Identities=13% Similarity=0.046 Sum_probs=74.9
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH-hhCC--CCHHHHHHHHHHHHhhhCCCchhh
Q 009636 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK-LLYS--PSDDVREQAVWALGNIAGDSPRCR 194 (530)
Q Consensus 118 v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-ll~~--~~~~i~~~a~~~L~nl~~~~~~~~ 194 (530)
+..+-+-|.-+|...-+..|+..+..++.........++.. .+..+++ +..+ .++.-.+.++..+..++......+
T Consensus 363 leYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~-~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~ 441 (960)
T KOG1992|consen 363 LEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSS-EVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAK 441 (960)
T ss_pred HHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhh
Confidence 33333344433422345667777777877554444444432 2333333 2222 455667778888777775432221
Q ss_pred hhHhhc----CChHHHH----HhhcC---CCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHH
Q 009636 195 DLVLSQ----GGLVPLL----AQLNG---QPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDA 263 (530)
Q Consensus 195 ~~i~~~----~~i~~Ll----~ll~~---~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a 263 (530)
.-+... +.+..+. .-|.. ...+-++..++. .+..............++|.++.+++.+..-+-.+|
T Consensus 442 ~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIK---y~~~FR~ql~~~~lm~~~p~li~~L~a~s~vvhsYA 518 (960)
T KOG1992|consen 442 HGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIK---YIYTFRNQLGKEHLMALLPRLIRFLEAESRVVHSYA 518 (960)
T ss_pred cceeeccccccHHHHHHHHhhHHhccCccccccchhhcccc---eeeeecccCChHHHHHHHHHHHHhccCcchHHHHHH
Confidence 111111 1111111 11211 112222222222 222222233344556789999999999988899999
Q ss_pred HHHHHHhcc
Q 009636 264 CWALSYLSD 272 (530)
Q Consensus 264 ~~~l~~l~~ 272 (530)
+.++-.+..
T Consensus 519 A~aiEkil~ 527 (960)
T KOG1992|consen 519 AIAIEKLLT 527 (960)
T ss_pred HHHHHhccc
Confidence 999876653
No 268
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.17 E-value=27 Score=36.63 Aligned_cols=189 Identities=15% Similarity=0.049 Sum_probs=114.0
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC-h----hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCch
Q 009636 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGT-S----EHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR 192 (530)
Q Consensus 118 v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~-~----~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~ 192 (530)
=|.|..-|+-.+ ..+|..|+..+.++---. + +..+.+++.. ...+-.+|+++.+.+|..|+..++.+.+.-..
T Consensus 176 ~p~l~R~L~a~N-s~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQ-f~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe 253 (1005)
T KOG1949|consen 176 KPILWRGLKARN-SEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQ-FEELYSLLEDPYPMVRSTAILGVCKITSKFWE 253 (1005)
T ss_pred hHHHHHhhccCc-hhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHH-HHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH
Confidence 344555666677 899999999999876421 2 3344444432 56788899999999999998888777543211
Q ss_pred hhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhcc
Q 009636 193 CRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD 272 (530)
Q Consensus 193 ~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~ 272 (530)
.-..-.-...+..+..-+..++..+++......|..+..++ ........++|.+-..+......|+..+...|..+-.
T Consensus 254 ~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np--~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~ 331 (1005)
T KOG1949|consen 254 MIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNP--LSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKA 331 (1005)
T ss_pred HcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCc--cchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHh
Confidence 10000001123333333334556688888888888888764 2233446677777778888888898888877776633
Q ss_pred CChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhh
Q 009636 273 GTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIV 313 (530)
Q Consensus 273 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~ 313 (530)
..- ..+.+---.+.++..|..++..+....+..+-+.+
T Consensus 332 vra---~~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~ 369 (1005)
T KOG1949|consen 332 VRA---AKFWKICPMDHILVRLETDSRPVSRRLVSLIFNSF 369 (1005)
T ss_pred hhh---hhhhccccHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 221 11222222445556666666555555444444443
No 269
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=89.53 E-value=18 Score=33.66 Aligned_cols=222 Identities=14% Similarity=0.074 Sum_probs=122.8
Q ss_pred HHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcC--CCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 009636 78 MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLR--EDYPQLQFEAAWALTNIASGTSEHTKVV 155 (530)
Q Consensus 78 l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~--~~~~~i~~~a~~~L~~l~~~~~~~~~~~ 155 (530)
|=..|.++|+..|..|+..|..++..-.... ....-+..|++++.+ .+ ......++..+..+..... .....
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~----L~~~ev~~L~~F~~~rl~D-~~~~~~~l~gl~~L~~~~~-~~~~~ 77 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDF----LSRQEVQVLLDFFCSRLDD-HACVQPALKGLLALVKMKN-FSPES 77 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh----ccHHHHHHHHHHHHHHhcc-HhhHHHHHHHHHHHHhCcC-CChhh
Confidence 3356789999999999999999987632111 111124444444332 23 3444444666666664221 11111
Q ss_pred HhCCChHHHHHhhC--CCCHHHHHHHHHHHHhhhCCCchhhhhHh--hcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009636 156 IDHGAVPIFVKLLY--SPSDDVREQAVWALGNIAGDSPRCRDLVL--SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (530)
Q Consensus 156 ~~~g~i~~L~~ll~--~~~~~i~~~a~~~L~nl~~~~~~~~~~i~--~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~ 231 (530)
...++..+.+-.. +.....|..+...+..+..... ..+. ..+++..+++.+....|+...-.+...+..+..
T Consensus 78 -~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~---~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~ 153 (262)
T PF14500_consen 78 -AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHR---EALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQ 153 (262)
T ss_pred -HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhH---HHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 0112233333221 2335567778888887765432 2222 234677888888777788888888888777776
Q ss_pred CCCCCChhhhhchHHHHHHhh----c-C-CCh--hHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHH
Q 009636 232 GKPQPPFDQVSPALPALAHLI----H-S-NDD--EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLI 303 (530)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~ll----~-~-~d~--~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~ 303 (530)
.-+. ......+...+...+ . . +|+ -..++.-.+|.......+. ...-.++.|++-|.++.+.++.
T Consensus 154 ~~~~--~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~-----fa~~~~p~LleKL~s~~~~~K~ 226 (262)
T PF14500_consen 154 EFDI--SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPL-----FAPFAFPLLLEKLDSTSPSVKL 226 (262)
T ss_pred hccc--chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHh-----hHHHHHHHHHHHHcCCCcHHHH
Confidence 6542 111222222222111 1 1 122 1233344444444333332 2235789999999999999999
Q ss_pred HHHHHHhHhhcCC
Q 009636 304 PALRTVGNIVTGD 316 (530)
Q Consensus 304 ~al~~L~nl~~~~ 316 (530)
.++.+|...+...
T Consensus 227 D~L~tL~~c~~~y 239 (262)
T PF14500_consen 227 DSLQTLKACIENY 239 (262)
T ss_pred HHHHHHHHHHHHC
Confidence 9999998877543
No 270
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=89.21 E-value=24 Score=34.80 Aligned_cols=306 Identities=14% Similarity=0.137 Sum_probs=154.0
Q ss_pred CCChHHHHHHHHHHHHhhcCCCC-CcHHHHHHcCCHHHHHHhhc----C------CCCHHHHHHHHHHHHHHhcCChhhH
Q 009636 84 SNDSGVQYECTTQFRKLLSIERS-PPIEEVIRSGVVPRFVEFLL----R------EDYPQLQFEAAWALTNIASGTSEHT 152 (530)
Q Consensus 84 s~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~~~g~v~~Lv~ll~----~------~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (530)
+.+.+.+..|-..|.+.+...++ +....+.+ -++.+++.++ + +.+..+..+|+++|+.+.. +++..
T Consensus 4 ~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~--k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~-~~~i~ 80 (372)
T PF12231_consen 4 GSDRSSRLDAYMTLNNALKAYDNLPDRQALQD--KMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLY-HPEIV 80 (372)
T ss_pred cCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHH--HHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHc-cHHHH
Confidence 44555666666666666655332 22333221 2444444433 1 1136788999999999887 44444
Q ss_pred HHHHhC---CChHHHHHhhCC--CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc---C-CCchhHHHHHH
Q 009636 153 KVVIDH---GAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN---G-QPKLSMLRNAT 223 (530)
Q Consensus 153 ~~~~~~---g~i~~L~~ll~~--~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~---~-~~~~~~~~~a~ 223 (530)
..+-+. -++...+..+.. .+..+....+|+|..=- +...++....+..++..+. + -....+....+
T Consensus 81 ~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~-----f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL 155 (372)
T PF12231_consen 81 STLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQK-----FSPKIMTSDRVERLLAALHNIKNRFPSKSIISERL 155 (372)
T ss_pred hhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-----CCCcccchhhHHHHHHHHHHhhccCCchhHHHHHH
Confidence 333221 134555555544 44567777777776422 2222334444555555442 2 34667777888
Q ss_pred HHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhcc--CChH-HHHH---HHHh----C-----cHH
Q 009636 224 WTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD--GTND-KIQA---VIEA----G-----VFP 288 (530)
Q Consensus 224 ~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~--~~~~-~~~~---~~~~----~-----~l~ 288 (530)
.++.+|....|..-......-+|.++..+-+....++..+......+.. .... .... ..+. + +.+
T Consensus 156 ~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 235 (372)
T PF12231_consen 156 NIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCE 235 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHH
Confidence 8888888775544333344467777777777777777766555544331 1111 1111 1111 2 334
Q ss_pred HHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHh---cCCHHHHHH
Q 009636 289 RLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT---AGNREQIQA 365 (530)
Q Consensus 289 ~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~---~~~~~~~~~ 365 (530)
.+..++.+.+......-+|..--+.-++.....--.-...+...-..+.++ ++.+|..|..+=..+. ..++.....
T Consensus 236 ~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~-d~~~k~~A~~aW~~liy~~~~~~~~~~k 314 (372)
T PF12231_consen 236 RLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSS-DPQVKIQAFKAWRRLIYASNPNELTSPK 314 (372)
T ss_pred HHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhcCCccccHH
Confidence 455566553333333333332222222221111111234556666677777 8888887754433332 222222222
Q ss_pred HHHhCcHHHHHHHHhcC-ch----hHHHHHHHHHHHhhc
Q 009636 366 VIEANIIGPLVALLENA-EF----DIKKEAAWAISNATS 399 (530)
Q Consensus 366 l~~~~~i~~L~~ll~~~-~~----~v~~~a~~aL~nl~~ 399 (530)
.+.. +..++...+... .. .++..+...++++..
T Consensus 315 ~l~l-L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly 352 (372)
T PF12231_consen 315 RLKL-LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLY 352 (372)
T ss_pred HHHH-HHHHHHHHhCccccccccHHHHHHHHHHHhchHH
Confidence 2221 233344444433 23 667777777777765
No 271
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=89.07 E-value=1.3 Score=36.75 Aligned_cols=74 Identities=8% Similarity=0.030 Sum_probs=60.6
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 009636 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS 146 (530)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~ 146 (530)
+++..+.+.|+++++.++..|+..|..++...+......+.+.+++..|+.++....++.++..++..+...+.
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 47788888999999999999999999888775444556677888999999999754458899999888887775
No 272
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=89.02 E-value=8.2 Score=41.24 Aligned_cols=157 Identities=18% Similarity=0.194 Sum_probs=109.7
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009636 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 153 (530)
.+..++..|.|.+..+...+-..+...+...+.+ + ++..|+++.-+..+ ..|+.+|..+-. +..+
T Consensus 5 ~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~---~-----l~~~l~~y~~~t~s----~~~~~il~~~~~--P~~K- 69 (668)
T PF04388_consen 5 SITELLSLLESNDLSVLEEIKALLQELLNSDREP---W-----LVNGLVDYYLSTNS----QRALEILVGVQE--PHDK- 69 (668)
T ss_pred cHHHHHHHhcCCchhhHHHHHHHHHHHhhccchH---H-----HHHHHHHHHhhcCc----HHHHHHHHhcCC--ccHH-
Confidence 6789999999999988888888888877654222 2 36667776544442 345556664432 3222
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC
Q 009636 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (530)
Q Consensus 154 ~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~ 233 (530)
.++..|-.++.. +..|-.++..|+.+....|..-..+.+...+..|+++|..+.+..+...|+.+|..|.-.-
T Consensus 70 -----~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~i 142 (668)
T PF04388_consen 70 -----HLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHI 142 (668)
T ss_pred -----HHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccc
Confidence 224455556653 4677889999999998887778888999999999999988889999999999998887665
Q ss_pred CCCChhhhhchHHHHHHhh
Q 009636 234 PQPPFDQVSPALPALAHLI 252 (530)
Q Consensus 234 ~~~~~~~~~~~l~~L~~ll 252 (530)
+.........++.+...++
T Consensus 143 p~~l~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 143 PSSLGPHLPDLFNIFGRLL 161 (668)
T ss_pred cchhhHHHHHHHHHHHHHH
Confidence 5444444445555555544
No 273
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=88.88 E-value=9.1 Score=40.41 Aligned_cols=136 Identities=17% Similarity=0.174 Sum_probs=81.5
Q ss_pred hchHHHHHHhhcCC----ChhHHHHHHHHHHHhcc----CChHHHHHHHHhCcHHHHHHhhC----CCCchhHHHHHHHH
Q 009636 242 SPALPALAHLIHSN----DDEVLTDACWALSYLSD----GTNDKIQAVIEAGVFPRLAEFLM----HPSPSVLIPALRTV 309 (530)
Q Consensus 242 ~~~l~~L~~ll~~~----d~~v~~~a~~~l~~l~~----~~~~~~~~~~~~~~l~~L~~lL~----~~~~~~~~~al~~L 309 (530)
...+..+..++.++ .+.+...++-+++.+.. ..+..-. .+-..+++.+...|. ..+...+..++++|
T Consensus 392 ~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaL 470 (574)
T smart00638 392 EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPD-FVLEELLKYLHELLQQAVSKGDEEEIQLYLKAL 470 (574)
T ss_pred HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCCh-hhHHHHHHHHHHHHHHHHhcCCchheeeHHHhh
Confidence 34556666666643 45566666667766652 1111001 111234555555443 34555677889999
Q ss_pred hHhhcCCchhhHHHhhcCchHHHHHhhc-CC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC--chh
Q 009636 310 GNIVTGDDMQTQCVIEYQALPCLLNLLS-GN-YKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFD 385 (530)
Q Consensus 310 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~-~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~ 385 (530)
||+.... .++.+..++. .. ....+|..|+|+|..++...+.. +-+.|+.++.+. +++
T Consensus 471 GN~g~~~-----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~E 531 (574)
T smart00638 471 GNAGHPS-----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPPE 531 (574)
T ss_pred hccCChh-----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCChH
Confidence 9987522 2445555554 21 15689999999999997655543 345566666554 688
Q ss_pred HHHHHHHHHHHh
Q 009636 386 IKKEAAWAISNA 397 (530)
Q Consensus 386 v~~~a~~aL~nl 397 (530)
+|..|+.+|...
T Consensus 532 vRiaA~~~lm~t 543 (574)
T smart00638 532 VRMAAVLVLMET 543 (574)
T ss_pred HHHHHHHHHHhc
Confidence 999888887655
No 274
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=88.81 E-value=8.4 Score=35.99 Aligned_cols=144 Identities=19% Similarity=0.172 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHhCC--ChHHHHHhhC----CCCHHHHHHHHHHHHhhhCCCchhhhhHhhcC--ChHH
Q 009636 134 QFEAAWALTNIASGTSEHTKVVIDHG--AVPIFVKLLY----SPSDDVREQAVWALGNIAGDSPRCRDLVLSQG--GLVP 205 (530)
Q Consensus 134 ~~~a~~~L~~l~~~~~~~~~~~~~~g--~i~~L~~ll~----~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~--~i~~ 205 (530)
+.=++-.+.-++. ++.....+...+ +...+..++. +..+..+-.++++++|+..... .+..+.... .+..
T Consensus 80 ~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~-~~~~~~~~~~~~i~~ 157 (268)
T PF08324_consen 80 RFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPP-GRQLLLSHFDSSILE 157 (268)
T ss_dssp -HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCC-CHHHHHCTHHTCHHH
T ss_pred chhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCc-cHHHHHhcccchHHH
Confidence 4444545544444 444444443322 2333343332 2567788899999999987665 455555432 2333
Q ss_pred HHHhhcCCC---chhHHHHHHHHhhhhccCC-CCC-ChhhhhchHHHHHHhhc-C-CChhHHHHHHHHHHHhccCChHHH
Q 009636 206 LLAQLNGQP---KLSMLRNATWTLSNFCRGK-PQP-PFDQVSPALPALAHLIH-S-NDDEVLTDACWALSYLSDGTNDKI 278 (530)
Q Consensus 206 Ll~ll~~~~---~~~~~~~a~~~L~~L~~~~-~~~-~~~~~~~~l~~L~~ll~-~-~d~~v~~~a~~~l~~l~~~~~~~~ 278 (530)
.+..+..+. +..++..++..+.|++... ... .......++..+...+. . .|++....++.+++++...+....
T Consensus 158 ~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~ 237 (268)
T PF08324_consen 158 LLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAK 237 (268)
T ss_dssp HCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHH
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHH
Confidence 333332332 7888888999999987654 111 22233345666666333 2 589999999999999997665443
Q ss_pred H
Q 009636 279 Q 279 (530)
Q Consensus 279 ~ 279 (530)
.
T Consensus 238 ~ 238 (268)
T PF08324_consen 238 Q 238 (268)
T ss_dssp H
T ss_pred H
Confidence 3
No 275
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=88.76 E-value=1.8 Score=40.59 Aligned_cols=189 Identities=14% Similarity=0.091 Sum_probs=103.2
Q ss_pred HHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcC--chHHHHHhhcCC---CchhHHHHHHHHHHHHhcCCHHH
Q 009636 288 PRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQ--ALPCLLNLLSGN---YKKSIKKEACWTVSNITAGNREQ 362 (530)
Q Consensus 288 ~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~--~l~~L~~lL~~~---~~~~v~~~a~~~L~nl~~~~~~~ 362 (530)
..+...+..-..+.+-+++..+.-++.... ....+...+ +...+..++... ..+..+.-++++++|+..+.. .
T Consensus 66 ~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~-~ 143 (268)
T PF08324_consen 66 ILLLKILLSWPPESRFPALDLLRLAALHPP-ASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPP-G 143 (268)
T ss_dssp HHHHHHHCCS-CCC-HHHHHHHHHHCCCHC-HHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCC-C
T ss_pred HHHHHHHHhCCCccchhHHhHHHHHHhCcc-HHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCc-c
Confidence 445555555555567788887766655333 222222211 234444444332 267788899999999987532 2
Q ss_pred HHHHHH-hC--cHHHHHHHHhcC---chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHh-ccC-CCChHHHHHHH
Q 009636 363 IQAVIE-AN--IIGPLVALLENA---EFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCD-LLV-CPDPRIVTVCL 434 (530)
Q Consensus 363 ~~~l~~-~~--~i~~L~~ll~~~---~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~-lL~-~~~~~~~~~al 434 (530)
...+.. .+ ++..+..+..+. +..++..++..+.|++..........=....++..+.. +.. ..|++....++
T Consensus 144 ~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~L 223 (268)
T PF08324_consen 144 RQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLL 223 (268)
T ss_dssp HHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHH
T ss_pred HHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHH
Confidence 333332 22 233333333332 67899999999999975210000000001113555555 333 36899999999
Q ss_pred HHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHh-cCCCHHHHHHHHHH
Q 009636 435 EGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQ-THDNAEIYEKSVKL 489 (530)
Q Consensus 435 ~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~-~~~~~~v~~~a~~i 489 (530)
-++++++..+.. ........|....+.... ....+.+++.+.+|
T Consensus 224 vAlGtL~~~~~~-----------~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~ei 268 (268)
T PF08324_consen 224 VALGTLLSSSDS-----------AKQLAKSLDVKSVLSKKANKSKEPRIKEVAAEI 268 (268)
T ss_dssp HHHHHHHCCSHH-----------HHHHCCCCTHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHhccChh-----------HHHHHHHcChHHHHHHHHhcccchHHHHHhccC
Confidence 999999955433 233344345555555543 55677777766554
No 276
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=88.60 E-value=4.1 Score=31.14 Aligned_cols=70 Identities=17% Similarity=0.200 Sum_probs=57.7
Q ss_pred HcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHH
Q 009636 411 IQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLL 490 (530)
Q Consensus 411 ~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il 490 (530)
....+..|+.....+++.....++..+..+++.... ...+.+.|+.+-+.++...-+++.+.....++
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a------------~~~l~~iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYA------------AQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHH------------HHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 445677888888888777888899999988876543 67788899999999999999999999999888
Q ss_pred HH
Q 009636 491 ET 492 (530)
Q Consensus 491 ~~ 492 (530)
+.
T Consensus 96 ~~ 97 (98)
T PF14726_consen 96 DQ 97 (98)
T ss_pred hc
Confidence 74
No 277
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.49 E-value=38 Score=36.12 Aligned_cols=315 Identities=14% Similarity=0.110 Sum_probs=166.7
Q ss_pred CHHHHHHhhcCC-ChHHHHHHHHHHHHhhcCCCCCcHHHHH--HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChh
Q 009636 74 NLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVI--RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE 150 (530)
Q Consensus 74 ~l~~l~~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~--~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~ 150 (530)
....++++++.. |..++..+++.++-.+..-. =.-+.+. -..+...+.+++..-..-+.+...+..|+.+.....+
T Consensus 527 ~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~n-F~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e 605 (978)
T KOG1993|consen 527 LYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWN-FSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSE 605 (978)
T ss_pred HHHHHHHhcCccccceeehHHHHHHHHhhhhcc-CChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 456777788865 67788889999987765421 1111111 1233444455554332234566666666666653333
Q ss_pred hHHHHHhCCChHHHHHhh------CCCCHHHHHHHHHHHHhhhC----CCchhhhhHhhcCChHHHHHhhcC---CCchh
Q 009636 151 HTKVVIDHGAVPIFVKLL------YSPSDDVREQAVWALGNIAG----DSPRCRDLVLSQGGLVPLLAQLNG---QPKLS 217 (530)
Q Consensus 151 ~~~~~~~~g~i~~L~~ll------~~~~~~i~~~a~~~L~nl~~----~~~~~~~~i~~~~~i~~Ll~ll~~---~~~~~ 217 (530)
..... ...+++++ .+..+-++...+.+|.|+.. .++.+. .++-+++.+..+ .+..-
T Consensus 606 ~I~P~-----~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~------~fL~pVIel~~D~~sP~hv~ 674 (978)
T KOG1993|consen 606 HIAPY-----ASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFY------PFLYPVIELSTDPSSPEHVY 674 (978)
T ss_pred hhhHH-----HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccch------HHHHHHHHHhcCCCCCceee
Confidence 32211 12223332 22456677777888888762 122111 123344444322 12333
Q ss_pred HHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHH-HHhccCChHHHHHHHHhCcHHHHHHhhCC
Q 009636 218 MLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWAL-SYLSDGTNDKIQAVIEAGVFPRLAEFLMH 296 (530)
Q Consensus 218 ~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l-~~l~~~~~~~~~~~~~~~~l~~L~~lL~~ 296 (530)
+.+.+.........+.+.. ....-+++|.+...++...+.+.. ++..+ +++.-.+....+ ....|++..+..++.+
T Consensus 675 L~EDgmeLW~~~L~n~~~l-~p~ll~L~p~l~~~iE~ste~L~t-~l~Ii~sYilLd~~~fl~-~y~~~i~k~~~~~l~d 751 (978)
T KOG1993|consen 675 LLEDGMELWLTTLMNSQKL-TPELLLLFPHLLYIIEQSTENLPT-VLMIISSYILLDNTVFLN-DYAFGIFKKLNDLLDD 751 (978)
T ss_pred hhhhHHHHHHHHHhccccc-CHHHHHHHHHHHHHHHhhhhhHHH-HHHHHHHHHhhccHHHHH-HHHHHHHHHHHHHHHH
Confidence 4455544444444443222 223456777777777655443332 23333 333333333222 3344888888888887
Q ss_pred CCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHh-CcHHH
Q 009636 297 PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-YKKSIKKEACWTVSNITAGNREQIQAVIEA-NIIGP 374 (530)
Q Consensus 297 ~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~-~~i~~ 374 (530)
-..+-....+.++..+...++ ........++++.+..-+-.+ ..|.+...-..+++.+.-.+++....+++. .-...
T Consensus 752 vr~egl~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~~~msvlqt~~~~d~ 830 (978)
T KOG1993|consen 752 VRNEGLQAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNPSLFMSVLQTKNTYDI 830 (978)
T ss_pred hhHHHHHHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcChHHHHHHHHhhhhHHH
Confidence 666677778888888776554 333445667888876655322 256677777777888777777766555532 11222
Q ss_pred HH--------HHHhc-CchhHHHHHHHHHHHhhcCCCHH
Q 009636 375 LV--------ALLEN-AEFDIKKEAAWAISNATSGGTHE 404 (530)
Q Consensus 375 L~--------~ll~~-~~~~v~~~a~~aL~nl~~~~~~~ 404 (530)
++ .+... .+++-|+--+-|+..+...+++.
T Consensus 831 ~~~~li~~WI~~~~~I~~~k~rKl~~LalsSll~t~~~~ 869 (978)
T KOG1993|consen 831 LIAMLIGNWILLFDHINHPKDRKLNTLALSSLLRTNNPD 869 (978)
T ss_pred HHHHHHHHHHHHcccCCCHHHhhHHHHHHHHHhccCCcH
Confidence 22 12211 25566666666666666654433
No 278
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=88.39 E-value=2.6 Score=35.04 Aligned_cols=73 Identities=8% Similarity=0.049 Sum_probs=62.1
Q ss_pred cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCC-CChHHHHHHHHHHHHHHHh
Q 009636 371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC-PDPRIVTVCLEGLENILKV 443 (530)
Q Consensus 371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~-~~~~~~~~al~~l~~ll~~ 443 (530)
++..|.+-+.+.++.++..|+..|-.++.++.......+.+..++..|..++.. .++.|...++..+......
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 566777778889999999999999999999988888888899999999999987 6788888888877765533
No 279
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.81 E-value=61 Score=38.31 Aligned_cols=230 Identities=16% Similarity=0.072 Sum_probs=111.7
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhhhh
Q 009636 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDL 196 (530)
Q Consensus 118 v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~~ 196 (530)
...++.-+..++ |..+..+..+++.++..-++. .++ .+..+.++.-+.+ .++..|..-..+++.+-.+....-..
T Consensus 878 ~~l~~~sl~~~~-p~~rc~~~ea~arLaq~v~~~--~f~-a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~ 953 (2067)
T KOG1822|consen 878 LTLIVNSLINPN-PKLRCAAAEALARLAQVVGSA--PFV-ASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSG 953 (2067)
T ss_pred HHHHhhhhccCC-hHHHHHHHHHHHHHHHhcccc--chH-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCc
Confidence 333444455555 666666666666666521111 111 1223444444444 44444544444555443221111111
Q ss_pred HhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCC---hhHHHHHHHH-------
Q 009636 197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSND---DEVLTDACWA------- 266 (530)
Q Consensus 197 i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d---~~v~~~a~~~------- 266 (530)
-.....+..++.+..++..+.++..++.++..+...............+..+..++.+.. .++....-++
T Consensus 954 qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~ 1033 (2067)
T KOG1822|consen 954 QHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDE 1033 (2067)
T ss_pred hhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhH
Confidence 111224556666665667789999999999988877533334445555555556555332 2222221111
Q ss_pred ------HHHhccCCh--HHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcC
Q 009636 267 ------LSYLSDGTN--DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG 338 (530)
Q Consensus 267 ------l~~l~~~~~--~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~ 338 (530)
++.=...+. +....+ ..-.+-...-++.++++.++..++.++-++-...+.+... .-+++.+..++.+
T Consensus 1034 ~alittlgpeL~~N~~~d~t~~~-rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~---~~lV~~L~~~l~s 1109 (2067)
T KOG1822|consen 1034 DALITTLGPELGPNGDKDSTSTL-RTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNL---DSLVLQLCSLLSS 1109 (2067)
T ss_pred HHHHHhcccccCCCCcccchhHH-HHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccH---HHHHHHHHHHhcc
Confidence 111111111 111111 1122333334456678888899999998887665543211 2345566666655
Q ss_pred CCchhHHHHHHHHHHHHh
Q 009636 339 NYKKSIKKEACWTVSNIT 356 (530)
Q Consensus 339 ~~~~~v~~~a~~~L~nl~ 356 (530)
. .--.|..+.-++..+.
T Consensus 1110 ~-~~i~r~~~~~clrql~ 1126 (2067)
T KOG1822|consen 1110 S-YLILRRASFSCLRQLV 1126 (2067)
T ss_pred h-hhhhhhhHHhhhhHHh
Confidence 4 3334444444444443
No 280
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=87.81 E-value=20 Score=32.85 Aligned_cols=129 Identities=13% Similarity=0.112 Sum_probs=69.0
Q ss_pred hCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCC-chhHHHHHHHHHHHHhcCCHHH
Q 009636 284 AGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKSIKKEACWTVSNITAGNREQ 362 (530)
Q Consensus 284 ~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~~ 362 (530)
...++.++.+++.++.. .-..+|......-...-..+-.|-++.|..++.++. +.-+|..|+.+|..++...+..
T Consensus 72 ~~A~~~li~l~~~~~~~----~~~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~ 147 (249)
T PF06685_consen 72 ERALPPLIRLFSQDDDF----LEDLFGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPIS 147 (249)
T ss_pred hhhHHHHHHHHcCCcch----HHHHHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCC
Confidence 36678899998766531 111222222111111111223456777777887764 4568899999999999866666
Q ss_pred HHHHHHhCcHHHHHHH-HhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHH
Q 009636 363 IQAVIEANIIGPLVAL-LENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPL 418 (530)
Q Consensus 363 ~~~l~~~~~i~~L~~l-l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L 418 (530)
+..+++ .+..++.. +...+..+--.-+..++.+-...-...++.+.+.|.++..
T Consensus 148 Re~vi~--~f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~~EL~~~I~~~f~~~lVd~~ 202 (249)
T PF06685_consen 148 REEVIQ--YFRELLNYFLERNPSFLWGSLVADICDLYPEELLPEIRKAFEDGLVDPS 202 (249)
T ss_pred HHHHHH--HHHHHHHHHhccCchHHHHHHHHHHHhcCHHHhHHHHHHHHHcCCCCcc
Confidence 666654 44444444 3333333333333333333332233455566667777553
No 281
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=87.22 E-value=25 Score=32.63 Aligned_cols=179 Identities=20% Similarity=0.174 Sum_probs=100.8
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHhhhCCC-------chhhhhHhhcCChHHHHHhhcCCCc----hhHHHHHHHHhhh
Q 009636 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDS-------PRCRDLVLSQGGLVPLLAQLNGQPK----LSMLRNATWTLSN 228 (530)
Q Consensus 160 ~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~-------~~~~~~i~~~~~i~~Ll~ll~~~~~----~~~~~~a~~~L~~ 228 (530)
+-+.+.+-+.+ +...+.++..|..++... .+.|-.+.-.+.+|.++..+ +.++ ......++..|+.
T Consensus 65 lq~Ll~KGL~S--s~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~-d~~~~i~~~~~~~~~A~~La~ 141 (262)
T PF14225_consen 65 LQPLLLKGLRS--SSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAF-DDPNPIQPDQECIEIAEALAQ 141 (262)
T ss_pred HHHHHhCccCC--CCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHh-cccccccccHHHHHHHHHHHH
Confidence 33444444444 345566777777776422 11233333334566666666 3333 2455667788888
Q ss_pred hccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHH
Q 009636 229 FCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRT 308 (530)
Q Consensus 229 L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~ 308 (530)
+|....... ...++....+--..+..+....++..|+.-.. ++ .+...+..++.+|.++-+.++..++.+
T Consensus 142 ~a~~~~~~~---La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~--P~-----~~~~~l~~Ll~lL~n~~~w~~~~~L~i 211 (262)
T PF14225_consen 142 VAEAQGLPN---LARILSSYAKGRFRDKDDFLSQVVSYLREAFF--PD-----HEFQILTFLLGLLENGPPWLRRKTLQI 211 (262)
T ss_pred HHHhCCCcc---HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC--ch-----hHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 886533221 11222222211112334455555555543221 11 112456778999999989999999999
Q ss_pred HhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009636 309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (530)
Q Consensus 309 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 357 (530)
|..+...-+.... ...+++..+.++++.+ ...+|..+|-++..
T Consensus 212 L~~ll~~~d~~~~--~~~dlispllrlL~t~----~~~eAL~VLd~~v~ 254 (262)
T PF14225_consen 212 LKVLLPHVDMRSP--HGADLISPLLRLLQTD----LWMEALEVLDEIVT 254 (262)
T ss_pred HHHHhccccCCCC--cchHHHHHHHHHhCCc----cHHHHHHHHHHHHh
Confidence 9999876554432 5566899999999876 34566666655543
No 282
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=87.03 E-value=7.7 Score=31.05 Aligned_cols=87 Identities=16% Similarity=0.195 Sum_probs=59.7
Q ss_pred HHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHc-CChHHHHhccCCCCh--
Q 009636 351 TVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQ-GCIKPLCDLLVCPDP-- 427 (530)
Q Consensus 351 ~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~-~~i~~L~~lL~~~~~-- 427 (530)
-|.+++..++..... ++..|.+-|+..++.|+..++.+|.+++..|++.+...+... ..|..+..+-...|+
T Consensus 24 Eia~~t~~s~~~~~e-----i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~ 98 (122)
T cd03572 24 EIAKLTRKSVGSCQE-----LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLK 98 (122)
T ss_pred HHHHHHHcCHHHHHH-----HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCccc
Confidence 344444444444433 556788888888999999999999999999988887776654 456666555543332
Q ss_pred ------HHHHHHHHHHHHHHH
Q 009636 428 ------RIVTVCLEGLENILK 442 (530)
Q Consensus 428 ------~~~~~al~~l~~ll~ 442 (530)
.|+..|-+++..|+.
T Consensus 99 Gd~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 99 GDSLNEKVREEAQELIKAIFS 119 (122)
T ss_pred CcchhHHHHHHHHHHHHHHhc
Confidence 477777777766653
No 283
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=86.97 E-value=3.8 Score=36.16 Aligned_cols=138 Identities=8% Similarity=0.121 Sum_probs=88.2
Q ss_pred HHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcC----CCchhHHHHHHHHHHHHhc-CCHHHHHHHHHhCcHHHHH
Q 009636 302 LIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG----NYKKSIKKEACWTVSNITA-GNREQIQAVIEANIIGPLV 376 (530)
Q Consensus 302 ~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~----~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~ 376 (530)
...|+..|..+++ .++....++++.+--.+...|.. .....+|-.+..+++.+.. +++..+..+....++|.++
T Consensus 117 vcnaL~lLQclaS-hPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL 195 (315)
T COG5209 117 VCNALNLLQCLAS-HPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL 195 (315)
T ss_pred HHHHHHHHHHHhc-CcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence 4456666666665 44444455566554444444432 2134678889999999988 6777888888899999999
Q ss_pred HHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHc--------CChHHH-HhccCCCChHHHHHHHHHHHHHHH
Q 009636 377 ALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQ--------GCIKPL-CDLLVCPDPRIVTVCLEGLENILK 442 (530)
Q Consensus 377 ~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~--------~~i~~L-~~lL~~~~~~~~~~al~~l~~ll~ 442 (530)
++++.++.--+.-|+..+..+.... ....++.+. .++..+ ..+.+.....+...++.+...+..
T Consensus 196 rIme~gSElSktvaifI~qkil~dD--vGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd 268 (315)
T COG5209 196 RIMELGSELSKTVAIFIFQKILGDD--VGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSD 268 (315)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecC
Confidence 9999998888888888888887743 333433321 112222 223345566666666666655543
No 284
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=86.90 E-value=10 Score=30.38 Aligned_cols=74 Identities=12% Similarity=0.257 Sum_probs=53.6
Q ss_pred ChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHh-hhhccHHHHHHHhc--------CCCHHHHH
Q 009636 414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMI-DDAEGLEKIESLQT--------HDNAEIYE 484 (530)
Q Consensus 414 ~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~l~~l~~--------~~~~~v~~ 484 (530)
+++.|..-|+..++.|...+|.+|..++..++.. |...+ .....+..+.+... .++..|+.
T Consensus 39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~----------f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~ 108 (122)
T cd03572 39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSD----------FKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVRE 108 (122)
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHH----------HHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHH
Confidence 5778888888888999899999999999887642 33333 23334555555544 34567999
Q ss_pred HHHHHHHHhCCCC
Q 009636 485 KSVKLLETYWLDD 497 (530)
Q Consensus 485 ~a~~il~~~~~~~ 497 (530)
.|.+++.-.|+++
T Consensus 109 ~A~El~~~if~~~ 121 (122)
T cd03572 109 EAQELIKAIFSYS 121 (122)
T ss_pred HHHHHHHHHhccC
Confidence 9999999998864
No 285
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=86.64 E-value=2.2 Score=34.98 Aligned_cols=74 Identities=9% Similarity=0.001 Sum_probs=58.0
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHH-HHHHHHHHHHHHhc
Q 009636 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQ-LQFEAAWALTNIAS 146 (530)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~-i~~~a~~~L~~l~~ 146 (530)
+++..+.+.|+++++.++..|+..+..++...+.+...++...+++..|+.++....... ++..++..+...+.
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 477888888999999999999999998887754445566667888999999988765333 88888887777665
No 286
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=86.27 E-value=4 Score=33.86 Aligned_cols=74 Identities=11% Similarity=0.023 Sum_probs=61.9
Q ss_pred cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccC-CCChHHHHHHHHHHHHHHHhh
Q 009636 371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV-CPDPRIVTVCLEGLENILKVG 444 (530)
Q Consensus 371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~-~~~~~~~~~al~~l~~ll~~~ 444 (530)
++..|.+-+.++++.++..|+..|-.++.++.......+.+.++++.|..++. ..++.|+..++..+.......
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 116 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAF 116 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence 56677788888999999999999999999887777788888999999999887 567788888888877766544
No 287
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=86.03 E-value=8.6 Score=29.41 Aligned_cols=93 Identities=13% Similarity=0.118 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHhhcCCCCCcHHHHH-HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH
Q 009636 88 GVQYECTTQFRKLLSIERSPPIEEVI-RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK 166 (530)
Q Consensus 88 ~~~~~a~~~l~~l~~~~~~~~~~~~~-~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ 166 (530)
+++..|+..+..-+... --....+. ...++..|++++..++ +..+..++..+..++. ++.....+.+.|+...|.+
T Consensus 2 EIR~RAL~~I~~Kl~~~-Li~~~dl~~~~~Ll~~LleWFnf~~-~~~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~k 78 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHG-LISEEDLVKERLLLKQLLEWFNFPP-VPMKEEVLALLLRLLK-SPYAAQILRDIGAVRFLSK 78 (98)
T ss_pred hHHHHHHHHHHHHHHhc-cccHHHHccHHHHHHHHHHHhCCCC-CccHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHHH
Confidence 46666766655333322 22233333 4567888899998888 5688999999999888 6778888888999888777
Q ss_pred hhCCCCHHHHHHHHHHH
Q 009636 167 LLYSPSDDVREQAVWAL 183 (530)
Q Consensus 167 ll~~~~~~i~~~a~~~L 183 (530)
+-...++..+..+-.++
T Consensus 79 lr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 79 LRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHhcCCHHHHHHHHHHH
Confidence 66556666655544443
No 288
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=86.01 E-value=9.8 Score=31.12 Aligned_cols=75 Identities=8% Similarity=-0.062 Sum_probs=61.8
Q ss_pred cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCC---CChHHHHHHHHHHHHHHHhhh
Q 009636 371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC---PDPRIVTVCLEGLENILKVGE 445 (530)
Q Consensus 371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~---~~~~~~~~al~~l~~ll~~~~ 445 (530)
++..|.+-+.++++.++..|+..|-.++.++...+...+....++..|..++.. .++.++..++..+...-....
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 566777888899999999999999999999887777777777888889998875 477899998888887765544
No 289
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=85.57 E-value=8.1 Score=46.73 Aligned_cols=264 Identities=15% Similarity=0.174 Sum_probs=134.9
Q ss_pred cCCChHHHHHHHHHHHHhhcCCCC-----CcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHh
Q 009636 83 WSNDSGVQYECTTQFRKLLSIERS-----PPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVID 157 (530)
Q Consensus 83 ~s~~~~~~~~a~~~l~~l~~~~~~-----~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~ 157 (530)
...+++.+..+...++.++..... +..-. +...++..+..+-....++.++......+. ........+
T Consensus 491 ~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~-~v~~vl~~ll~~aia~~~~~i~~~v~~~l~------~~~~~~laQ 563 (2341)
T KOG0891|consen 491 EADDSEIRKNAALTCCELLKYDIICSQTSPHALQ-VVKEVLSALLTVAIADTDPDIRIRVLSSLN------ERFDAQLAQ 563 (2341)
T ss_pred hcccHHHHHHHHHHHHHHHhhhhhhhcccchHHH-HHHHHHHHHHHHhccCCCcchhhhHHhhhc------cchhhhhcC
Confidence 345677777776666666543211 00000 011223333333222222555554443332 222223334
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc---CCCchhHHHHHHHHhhh-hccCC
Q 009636 158 HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN---GQPKLSMLRNATWTLSN-FCRGK 233 (530)
Q Consensus 158 ~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~---~~~~~~~~~~a~~~L~~-L~~~~ 233 (530)
.+.+..+...+....-.+++.+...+++++..+|.+.-.-+.. ..+..+. .+.-. ....-+..... +....
T Consensus 564 ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~----~~l~~~s~l~~sg~~-r~~~~~a~~~~~~i~~~ 638 (2341)
T KOG0891|consen 564 PDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRK----TLLELLTELEFSGMA-RTKEESAKLLCELIISS 638 (2341)
T ss_pred chhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHH----HHHHHhchhhhcchH-HhHHHHHHHhhHHHHHH
Confidence 4555556666666777889999999999998766321111111 1111111 11101 11111111110 00000
Q ss_pred CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC-CCchhHHHHHHHHhHh
Q 009636 234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH-PSPSVLIPALRTVGNI 312 (530)
Q Consensus 234 ~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~~~~~al~~L~nl 312 (530)
+..........+..++..+...++.+...+..+++.|+..........++ ..++.+.+.+.. ++..-+..++++++++
T Consensus 639 ~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l 717 (2341)
T KOG0891|consen 639 PVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQL 717 (2341)
T ss_pred HHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhh
Confidence 11111223444566667777777788888888998888655433333444 455555555544 4555678899999999
Q ss_pred hcCCchhhHHHh-hcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCC
Q 009636 313 VTGDDMQTQCVI-EYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN 359 (530)
Q Consensus 313 ~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~ 359 (530)
............ -.-++..+...+.......++.++...++++...+
T Consensus 718 ~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~d 765 (2341)
T KOG0891|consen 718 ESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGALD 765 (2341)
T ss_pred hcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcccc
Confidence 875443221111 12456666666666656678888888888776543
No 290
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=85.13 E-value=14 Score=35.99 Aligned_cols=210 Identities=20% Similarity=0.146 Sum_probs=107.6
Q ss_pred cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhh
Q 009636 115 SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194 (530)
Q Consensus 115 ~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~ 194 (530)
..++..|..++..+.++......+.+++.-+..- ..-+...++..+..-+.+..+.+|..-+..++.+....+...
T Consensus 21 ~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~----~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~ 96 (339)
T PF12074_consen 21 SKIVQGLSPLLSKESNEAALSALLSALFKHLFFL----SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSD 96 (339)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh----CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCch
Confidence 4456777777776554666666666665544311 001112345667777777666789888888888775111000
Q ss_pred hhHhhcCChHHHHHhhc---CCCchhHH---HHHHHHhhhhccCC-----------------CCCChhhhhchHHHHHHh
Q 009636 195 DLVLSQGGLVPLLAQLN---GQPKLSML---RNATWTLSNFCRGK-----------------PQPPFDQVSPALPALAHL 251 (530)
Q Consensus 195 ~~i~~~~~i~~Ll~ll~---~~~~~~~~---~~a~~~L~~L~~~~-----------------~~~~~~~~~~~l~~L~~l 251 (530)
..-.-..+++.|++.++ .++-.... -.+..++..++... +.+.+.... ++
T Consensus 97 ~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~-------kv 169 (339)
T PF12074_consen 97 SLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSE-------KV 169 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCH-------HH
Confidence 11112236777777763 12211111 01111111111111 011111000 22
Q ss_pred hcC-CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC--CchhHHHHHHHHhHhhcCCchhhHHHhhcCc
Q 009636 252 IHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP--SPSVLIPALRTVGNIVTGDDMQTQCVIEYQA 328 (530)
Q Consensus 252 l~~-~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~ 328 (530)
... .+++-....++++..+..........-....+-..++.++.+. .+.+|..|+.++..+...++.. +...+
T Consensus 170 yskl~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~----l~~~l 245 (339)
T PF12074_consen 170 YSKLASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL----LSKSL 245 (339)
T ss_pred HhccCCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH----HHHHH
Confidence 222 3444555566666665544332111111223456677888777 8999999999999998877753 33445
Q ss_pred hHHHHHhhcCC
Q 009636 329 LPCLLNLLSGN 339 (530)
Q Consensus 329 l~~L~~lL~~~ 339 (530)
+..+..++...
T Consensus 246 i~~l~~~l~~~ 256 (339)
T PF12074_consen 246 ISGLWKWLSSS 256 (339)
T ss_pred HHHHHHHHHhc
Confidence 66666666543
No 291
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=85.08 E-value=4.2 Score=33.33 Aligned_cols=74 Identities=14% Similarity=0.047 Sum_probs=58.0
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCC--CCHHHHHHHHHHHHHHhc
Q 009636 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE--DYPQLQFEAAWALTNIAS 146 (530)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~--~~~~i~~~a~~~L~~l~~ 146 (530)
+++..+.+.|+++++.++..|+..|..++...+.+....+.....+..|+.++... .++.++..++..+...+.
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 47788888999999999999999999888775333444555557788899999763 347899999988888776
No 292
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=85.05 E-value=5.8 Score=32.71 Aligned_cols=73 Identities=18% Similarity=0.253 Sum_probs=57.6
Q ss_pred ChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhc------CCCHHHHHHHH
Q 009636 414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQT------HDNAEIYEKSV 487 (530)
Q Consensus 414 ~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~------~~~~~v~~~a~ 487 (530)
++..|..-|.++++.++..|+..|..+++.+.. .|...+...+.++.+..+.. ..++.|++++.
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~----------~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil 108 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGE----------RFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKII 108 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCH----------HHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHH
Confidence 566777778899999999999999999886633 25666777777777777764 36899999999
Q ss_pred HHHHHhCCC
Q 009636 488 KLLETYWLD 496 (530)
Q Consensus 488 ~il~~~~~~ 496 (530)
.+++.|-..
T Consensus 109 ~li~~W~~~ 117 (139)
T cd03567 109 ELLYSWTLE 117 (139)
T ss_pred HHHHHHHHH
Confidence 999998653
No 293
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=85.03 E-value=4.5 Score=36.30 Aligned_cols=83 Identities=20% Similarity=0.294 Sum_probs=60.7
Q ss_pred hhHHHHHHHHhHhhcCCchhhHHHhh-------cCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHH-HHhCc
Q 009636 300 SVLIPALRTVGNIVTGDDMQTQCVIE-------YQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAV-IEANI 371 (530)
Q Consensus 300 ~~~~~al~~L~nl~~~~~~~~~~~~~-------~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l-~~~~~ 371 (530)
+-+..|+.+|+.++.... ..+.++. ..++..|..++....++..|+-|...|.|++.++......+ .+.+.
T Consensus 139 SPqrlaLEaLcKLsV~e~-NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIEN-NVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CHHHHHHHHHHHhheecc-CcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 457889999999986332 2223322 24566777777776688899999999999999877666444 46789
Q ss_pred HHHHHHHHhcCc
Q 009636 372 IGPLVALLENAE 383 (530)
Q Consensus 372 i~~L~~ll~~~~ 383 (530)
|..|+..+...+
T Consensus 218 i~~Li~FiE~a~ 229 (257)
T PF12031_consen 218 ISHLIAFIEDAE 229 (257)
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
No 294
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=84.66 E-value=41 Score=33.94 Aligned_cols=262 Identities=11% Similarity=0.068 Sum_probs=123.2
Q ss_pred CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC----CCCChhhhhchHH
Q 009636 171 PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK----PQPPFDQVSPALP 246 (530)
Q Consensus 171 ~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~----~~~~~~~~~~~l~ 246 (530)
+++-+.....+++..+-.+.......++.. .+..+....++..++..-.+...+++.+.+.. +.........++|
T Consensus 42 ENeylMk~iMRvl~~~~e~~~p~~~~il~~-L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P 120 (435)
T PF03378_consen 42 ENEYLMKCIMRVLSVLQEDILPIAVEILQH-LTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFP 120 (435)
T ss_dssp C-HHHHHHHHHHHHHSTTTTGGGHHHHHHH-HHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHH
T ss_pred cchHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHH
Confidence 455566666666655544433333333221 23333333334457777777666666665543 2222345677889
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHhccCCh-HHHHHHHHhCcHHHHHHhhCCCCc---hhHHHHHHHHhHhhcCCchhhHH
Q 009636 247 ALAHLIHSNDDEVLTDACWALSYLSDGTN-DKIQAVIEAGVFPRLAEFLMHPSP---SVLIPALRTVGNIVTGDDMQTQC 322 (530)
Q Consensus 247 ~L~~ll~~~d~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~---~~~~~al~~L~nl~~~~~~~~~~ 322 (530)
.+...|..+-.+..-++...++.+.+... .... .-....+-.++...-| .-.-...+.|.++....+...
T Consensus 121 ~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p----~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i-- 194 (435)
T PF03378_consen 121 PFQEILQQDVQEFIPYVFQILAQLLELRPSSPLP----DAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFI-- 194 (435)
T ss_dssp HHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S------TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc----HHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhh--
Confidence 99999988878888888888888875544 1111 1122222223322222 222344556666554333322
Q ss_pred Hhhc----CchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCH-HHHHHHHHhCcHHHHHHHHhcC-chhHHHHHHHHHHH
Q 009636 323 VIEY----QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR-EQIQAVIEANIIGPLVALLENA-EFDIKKEAAWAISN 396 (530)
Q Consensus 323 ~~~~----~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~-~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~n 396 (530)
... +++..+-+++.+. .. -..+...|..+...-+ +.....+. .++..++.-|++. ..+..+.-+..++.
T Consensus 195 -~~~~~l~~iLgvFQkLi~sk-~~--D~~gF~LL~~iv~~~p~~~l~~yl~-~I~~lll~RLq~skT~kf~~~fv~F~~~ 269 (435)
T PF03378_consen 195 -VANNQLEPILGVFQKLIASK-AN--DHYGFDLLESIVENLPPEALEPYLK-QIFTLLLTRLQSSKTEKFVKRFVVFLSL 269 (435)
T ss_dssp ----S-CHHHHHHHHHHHT-T-TC--HHHHHHHHHHHHHHS-HHHHGGGHH-HHHHHHHHHHHHC--HHHHHHHHHHHHH
T ss_pred -cchhhHHHHHHHHHHHHCCC-Cc--chHHHHHHHHHHHHCCHHHHHHHHH-HHHHHHHHHHhhCCcHHHHHHHHHHHHH
Confidence 222 3444444566554 22 2456667776665333 23333332 3555555555544 45666666666666
Q ss_pred hhcCCCHHHHHHHHH---cCChHHHHhcc------CCCChHHHHHHHHHHHHHHHhh
Q 009636 397 ATSGGTHEQIKFLVI---QGCIKPLCDLL------VCPDPRIVTVCLEGLENILKVG 444 (530)
Q Consensus 397 l~~~~~~~~~~~l~~---~~~i~~L~~lL------~~~~~~~~~~al~~l~~ll~~~ 444 (530)
++...+++..-..++ .|+...+..-+ +-..+.-+..+.-++.+++...
T Consensus 270 ~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~es 326 (435)
T PF03378_consen 270 FAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCES 326 (435)
T ss_dssp HHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHSS
T ss_pred HHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhcc
Confidence 555434444444333 24333332211 1122333445555666666443
No 295
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=84.07 E-value=3.1 Score=37.29 Aligned_cols=82 Identities=15% Similarity=0.195 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHhhcCCCCCcHHHHHH-------cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHH-HhCC
Q 009636 88 GVQYECTTQFRKLLSIERSPPIEEVIR-------SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV-IDHG 159 (530)
Q Consensus 88 ~~~~~a~~~l~~l~~~~~~~~~~~~~~-------~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~-~~~g 159 (530)
.-|..|+.++.|+.-.+ .+++.++. ..++..|++++....++..++-|+-.|.+++.++......+ .+.+
T Consensus 139 SPqrlaLEaLcKLsV~e--~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~ 216 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIE--NNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKP 216 (257)
T ss_pred CHHHHHHHHHHHhheec--cCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhc
Confidence 46788999999986553 33332222 23566778888776668999999999999999877666444 4578
Q ss_pred ChHHHHHhhCCC
Q 009636 160 AVPIFVKLLYSP 171 (530)
Q Consensus 160 ~i~~L~~ll~~~ 171 (530)
.|..|+.++...
T Consensus 217 ~i~~Li~FiE~a 228 (257)
T PF12031_consen 217 CISHLIAFIEDA 228 (257)
T ss_pred hHHHHHHHHHHH
Confidence 999999999653
No 296
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=83.95 E-value=14 Score=34.78 Aligned_cols=116 Identities=16% Similarity=0.208 Sum_probs=76.0
Q ss_pred CchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHH-HHHHHhCcHHHHHHH----Hh--------cCchhHHHHHHHH
Q 009636 327 QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQI-QAVIEANIIGPLVAL----LE--------NAEFDIKKEAAWA 393 (530)
Q Consensus 327 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~-~~l~~~~~i~~L~~l----l~--------~~~~~v~~~a~~a 393 (530)
-++|.++.++++. ++.+|..++.+|..+....+... ..+.+.|+.+.+.+. +. .....+-..|.-+
T Consensus 119 liiP~iL~llDD~-~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~ 197 (282)
T PF10521_consen 119 LIIPPILNLLDDY-SPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPA 197 (282)
T ss_pred HHHhhHHHHhcCC-CHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHH
Confidence 4689999999998 99999999999999988543332 335566765544443 33 3356677788888
Q ss_pred HHHhhcC-------CCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHh
Q 009636 394 ISNATSG-------GTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKV 443 (530)
Q Consensus 394 L~nl~~~-------~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~ 443 (530)
|..++.. ........++..|++..+....+...+.++...++.+..++..
T Consensus 198 L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~ 254 (282)
T PF10521_consen 198 LLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDE 254 (282)
T ss_pred HHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHH
Confidence 8877431 1223344445555555554444445678888877777766654
No 297
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=83.74 E-value=33 Score=37.01 Aligned_cols=166 Identities=14% Similarity=0.124 Sum_probs=88.0
Q ss_pred HhhcCchHHHHHhhcCCC-------chhHHHHHHHHHHHHhcCCHHHHHHHHH-------h-CcHHHHHHHHhc----Cc
Q 009636 323 VIEYQALPCLLNLLSGNY-------KKSIKKEACWTVSNITAGNREQIQAVIE-------A-NIIGPLVALLEN----AE 383 (530)
Q Consensus 323 ~~~~~~l~~L~~lL~~~~-------~~~v~~~a~~~L~nl~~~~~~~~~~l~~-------~-~~i~~L~~ll~~----~~ 383 (530)
++..+.+..++.+...+. ..+....|..+|+-++.-. +....+.. + ..+..++..... .|
T Consensus 597 flkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP-~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~D 675 (1516)
T KOG1832|consen 597 FLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIP-DIQKALAHATLSNNRAYDGIAIILDAANGSNSIVD 675 (1516)
T ss_pred HHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecc-hHHHHHHHHHhhcccccCceEEEeecccccccccC
Confidence 445566666666665432 1234455555555554432 22222221 1 123333333221 27
Q ss_pred hhHHHHHHHHHHHhhcCC---------------------------C---HHHHHHHH----HcCChHHHHhccCCCCh--
Q 009636 384 FDIKKEAAWAISNATSGG---------------------------T---HEQIKFLV----IQGCIKPLCDLLVCPDP-- 427 (530)
Q Consensus 384 ~~v~~~a~~aL~nl~~~~---------------------------~---~~~~~~l~----~~~~i~~L~~lL~~~~~-- 427 (530)
+++++.|+.+|.|+.+.. . ....+.++ .+++|..|+.+|+-..|
T Consensus 676 pei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t 755 (1516)
T KOG1832|consen 676 PEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPPT 755 (1516)
T ss_pred HHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCC
Confidence 899999999999998643 0 11222222 35789999999985443
Q ss_pred ---HHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHH---Hhc--CCCHHHHHHHHHHHHHhCCC
Q 009636 428 ---RIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIES---LQT--HDNAEIYEKSVKLLETYWLD 496 (530)
Q Consensus 428 ---~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~---l~~--~~~~~v~~~a~~il~~~~~~ 496 (530)
.++..|+.+|.-|.....-.+... -..++. ..+++.+.. +++ |..-...+.|..+|+..++.
T Consensus 756 ~aD~IRalAc~~L~GLaR~~tVrQIlt------KLpLvt-~~~~q~lm~ePV~~Dkr~~H~~fck~A~~Ll~~~~g~ 825 (1516)
T KOG1832|consen 756 TADCIRALACRVLLGLARDDTVRQILT------KLPLVT-NERAQILMAEPVTYDKRHEHLQFCKLASALLKEAQGT 825 (1516)
T ss_pred cHHHHHHHHHHHHhccccCcHHHHHHH------hCcccc-chHHHHHhhCcccccchhHHHHHHHHHHHHHHHHhCC
Confidence 377788888777766554322100 011222 222333221 122 33344567889999988765
No 298
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=83.66 E-value=58 Score=33.67 Aligned_cols=146 Identities=13% Similarity=-0.006 Sum_probs=86.0
Q ss_pred chhHHHHHHHHH---HHHhcC-CHHHH---HHHHHhCcHHHHHH----HHhcCchhHHHHHHHHHHHhhcCCCHHHHHHH
Q 009636 341 KKSIKKEACWTV---SNITAG-NREQI---QAVIEANIIGPLVA----LLENAEFDIKKEAAWAISNATSGGTHEQIKFL 409 (530)
Q Consensus 341 ~~~v~~~a~~~L---~nl~~~-~~~~~---~~l~~~~~i~~L~~----ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l 409 (530)
...++..+...+ .....+ .+..+ ...+..++.|.+-. -....+...|..+..+|+.++.....-..
T Consensus 334 ~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~--- 410 (501)
T PF13001_consen 334 NSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFS--- 410 (501)
T ss_pred ccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCccccc---
Confidence 345666665555 444442 23322 33334455554410 01123678999999999999997532211
Q ss_pred HHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHH-HHHHHhcCCCHHHHHHHHH
Q 009636 410 VIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLE-KIESLQTHDNAEIYEKSVK 488 (530)
Q Consensus 410 ~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~l~~l~~~~~~~v~~~a~~ 488 (530)
-+-+++..|.+-|+.++++++..+-++|..+.......... ..... ...+. .+.....+....++..|.+
T Consensus 411 ~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~-----~~~~~----~~~~~~l~~~~~~~~~~~~R~~avk 481 (501)
T PF13001_consen 411 KDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDD-----EDEQK----RLLLELLLLSYIQSEVRSCRYAAVK 481 (501)
T ss_pred ccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccc-----hhHHH----HHHHHHHHHhhccchhHHHHHHHHH
Confidence 13367888888888999999999999999998766542210 00000 00011 1222334566668888888
Q ss_pred HHHHhCCCCC
Q 009636 489 LLETYWLDDE 498 (530)
Q Consensus 489 il~~~~~~~~ 498 (530)
-.++.|+.++
T Consensus 482 ~an~~fpf~d 491 (501)
T PF13001_consen 482 YANACFPFSD 491 (501)
T ss_pred HHHHhCCccc
Confidence 8888888655
No 299
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=83.00 E-value=12 Score=34.88 Aligned_cols=75 Identities=9% Similarity=0.140 Sum_probs=50.2
Q ss_pred CChHHHHHHHHHHHHHHHhhhhhhhcCC-----CCchhhHHHhhhhccHHHHHHHhcCCCH-HHHHHHHHHHHHhCCCCC
Q 009636 425 PDPRIVTVCLEGLENILKVGEAEKNLGN-----TDVNVFTQMIDDAEGLEKIESLQTHDNA-EIYEKSVKLLETYWLDDE 498 (530)
Q Consensus 425 ~~~~~~~~al~~l~~ll~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~l~~l~~~~~~-~v~~~a~~il~~~~~~~~ 498 (530)
.|..+++.++..+.|++...+....... ...+.+...|.+.|.++.|..+..+.++ +-.....+|+.-.|-+.+
T Consensus 132 ~d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~~l~~~~v~~lLL~l~s~~~~~~f~~~lLEIi~ll~k~~~ 211 (266)
T PF04821_consen 132 RDNLIIELVLTLIRNLLAIPDPPSASKRSDEDSSLHDQLIWALFESGVLDLLLTLASSPQESDFNLLLLEIIYLLFKGQD 211 (266)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcccccccchhHHHHHHHHHHHHHcCHHHHHHHHHhCccccchhhHHHHHHHHHHcCCC
Confidence 3556899999999999987443211100 0245677888899999999999877633 344456666666666554
Q ss_pred C
Q 009636 499 D 499 (530)
Q Consensus 499 ~ 499 (530)
.
T Consensus 212 p 212 (266)
T PF04821_consen 212 P 212 (266)
T ss_pred H
Confidence 3
No 300
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=82.66 E-value=28 Score=30.16 Aligned_cols=85 Identities=19% Similarity=0.226 Sum_probs=61.6
Q ss_pred hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC-ChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCc
Q 009636 239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG-TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD 317 (530)
Q Consensus 239 ~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~ 317 (530)
......+|.++.-+...+...+.-|...+..+... ..+.+-.++. .++..|-..|.+.++.+...++.+|..|+...+
T Consensus 34 Ldy~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlP-qLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~ 112 (183)
T PF10274_consen 34 LDYHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLP-QLIIPLKRALNTRDPEVFCATLKALQQLVTSSD 112 (183)
T ss_pred cchhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence 33467889999988887777667777777777655 4444433333 567777788899999999999999999977666
Q ss_pred hhhHHHh
Q 009636 318 MQTQCVI 324 (530)
Q Consensus 318 ~~~~~~~ 324 (530)
.....+.
T Consensus 113 ~vG~aLv 119 (183)
T PF10274_consen 113 MVGEALV 119 (183)
T ss_pred hhhHHHH
Confidence 5444443
No 301
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=82.20 E-value=41 Score=30.87 Aligned_cols=95 Identities=14% Similarity=0.170 Sum_probs=52.1
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhh--HhhcCChHHHHHhhcCCC-chhHHHHHHHHhhhhccCCC
Q 009636 158 HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL--VLSQGGLVPLLAQLNGQP-KLSMLRNATWTLSNFCRGKP 234 (530)
Q Consensus 158 ~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~--i~~~~~i~~Ll~ll~~~~-~~~~~~~a~~~L~~L~~~~~ 234 (530)
..+++.++++++.++..+- ..++-..... .... .+-.|-+..|.+++.+.. +.-++..|+.+|..+....+
T Consensus 72 ~~A~~~li~l~~~~~~~~~----~l~GD~~tE~--l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~ 145 (249)
T PF06685_consen 72 ERALPPLIRLFSQDDDFLE----DLFGDFITED--LPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGP 145 (249)
T ss_pred hhhHHHHHHHHcCCcchHH----HHHcchhHhH--HHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCC
Confidence 4568899999976543211 1111111110 1111 122455777777775433 67788889999999998876
Q ss_pred CCChhhhhchHHHHHHhhcCCChh
Q 009636 235 QPPFDQVSPALPALAHLIHSNDDE 258 (530)
Q Consensus 235 ~~~~~~~~~~l~~L~~ll~~~d~~ 258 (530)
........-+-..+...+...+..
T Consensus 146 ~~Re~vi~~f~~ll~~~l~~~~~~ 169 (249)
T PF06685_consen 146 ISREEVIQYFRELLNYFLERNPSF 169 (249)
T ss_pred CCHHHHHHHHHHHHHHHhccCchH
Confidence 555444444444444445444444
No 302
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=80.65 E-value=1.1e+02 Score=35.18 Aligned_cols=150 Identities=9% Similarity=0.114 Sum_probs=90.8
Q ss_pred hhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchh
Q 009636 240 QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ 319 (530)
Q Consensus 240 ~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~ 319 (530)
...+++|.|..-|.+++..++..|...++.+......... --...+....+.-+.+.+..+|..++....++...++..
T Consensus 256 ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~ 334 (1266)
T KOG1525|consen 256 LLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSI 334 (1266)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchh
Confidence 3467778888788889999999999999998876554322 001234555666677788899999999888887766544
Q ss_pred hHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009636 320 TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS 399 (530)
Q Consensus 320 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 399 (530)
.... +....+-.. +. ++.+|.....++.-+.. ....-.++.. ++..+-+.+.+..+.||..|+..|..+..
T Consensus 335 ~~~~---~~~~~l~~~--~~-D~~~rir~~v~i~~~~v--~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 335 AKAS---TILLALRER--DL-DEDVRVRTQVVIVACDV--MKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYK 405 (1266)
T ss_pred hhHH---HHHHHHHhh--cC-ChhhhheeeEEEEEeeh--hHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 3221 122222222 22 44444433222221111 0111112223 56666667777789999999998887765
No 303
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=80.42 E-value=24 Score=33.41 Aligned_cols=104 Identities=12% Similarity=0.192 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHH---------------------HHHhCcHHHHHHHHhcC--chhHHHHHHHHHHHhhc
Q 009636 343 SIKKEACWTVSNITAGNREQIQA---------------------VIEANIIGPLVALLENA--EFDIKKEAAWAISNATS 399 (530)
Q Consensus 343 ~v~~~a~~~L~nl~~~~~~~~~~---------------------l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~nl~~ 399 (530)
.+|..-...+.++|.+....... --+.|++..+++.+... +...|-.-+.|+-.+..
T Consensus 47 ~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLR 126 (303)
T PF12463_consen 47 ILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESELNSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLR 126 (303)
T ss_pred HHHHHHHHHHHHHhccccchhHHHHHhcCccccccccccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHc
Confidence 36677778888887732111100 11357788888877654 66788899999999999
Q ss_pred CCCH-HHHHHHHHcCChHHHHhccCCC---ChHHHHHHHHHHHHHHHhhhh
Q 009636 400 GGTH-EQIKFLVIQGCIKPLCDLLVCP---DPRIVTVCLEGLENILKVGEA 446 (530)
Q Consensus 400 ~~~~-~~~~~l~~~~~i~~L~~lL~~~---~~~~~~~al~~l~~ll~~~~~ 446 (530)
++++ ....++.+.|+++.++..+-++ +..+.+...+.|+-+++....
T Consensus 127 g~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~~FDLLGELiK~n~~ 177 (303)
T PF12463_consen 127 GATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQSNFDLLGELIKFNRD 177 (303)
T ss_pred CCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHHHHHHHHHHHCCCHH
Confidence 9887 5666888999999998866543 346889999999999987755
No 304
>smart00509 TFS2N Domain in the N-terminus of transcription elongation factor S-II (and elsewhere).
Probab=80.21 E-value=7.4 Score=28.10 Aligned_cols=52 Identities=23% Similarity=0.416 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009636 431 TVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW 494 (530)
Q Consensus 431 ~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~ 494 (530)
..++++|..|-.... -.+.+...+.-..+..|..|++++|...|..++..|-
T Consensus 19 ~~~l~~L~~L~~~~~------------t~~~L~~T~iG~~v~~Lrkh~~~~I~~~A~~Li~~WK 70 (75)
T smart00509 19 SRCLDILKKLKKLPI------------TVDLLEETRIGKKVNGLRKHKNEEIRKLAKKLIKSWK 70 (75)
T ss_pred HHHHHHHHHHhcCCC------------CHHHHHHCcHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 345666665554332 2677778888888999999999999999999998773
No 305
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=80.17 E-value=62 Score=31.70 Aligned_cols=158 Identities=12% Similarity=0.072 Sum_probs=86.5
Q ss_pred CHHHHHHhhcCCC-hHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhc---CCC------CHHHHHHHHHHHHH
Q 009636 74 NLPVMVAGVWSND-SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLL---RED------YPQLQFEAAWALTN 143 (530)
Q Consensus 74 ~l~~l~~~l~s~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~---~~~------~~~i~~~a~~~L~~ 143 (530)
....+...|..+. +..+...+..++- ++.+ ....+-+.....+..|+.+-. .++ +..+..+|+.||+|
T Consensus 46 L~e~i~~Vle~~~p~t~~v~~LetvrI-LSRd-k~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcN 123 (532)
T KOG4464|consen 46 LGERIFEVLENGEPLTHRVVCLETVRI-LSRD-KDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCN 123 (532)
T ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHH-Hhcc-ccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHH
Confidence 3455556666555 4455666666664 4443 222222222222444444322 111 24788999999999
Q ss_pred HhcCChhhHHHHHhCCChHHHHHhhCC-----CCHHHHHHHHHHHHhhhCCCchhhh-hHhhcCChHHHHHhhcC-----
Q 009636 144 IASGTSEHTKVVIDHGAVPIFVKLLYS-----PSDDVREQAVWALGNIAGDSPRCRD-LVLSQGGLVPLLAQLNG----- 212 (530)
Q Consensus 144 l~~~~~~~~~~~~~~g~i~~L~~ll~~-----~~~~i~~~a~~~L~nl~~~~~~~~~-~i~~~~~i~~Ll~ll~~----- 212 (530)
+...++..++..........+++.+.. ....+...-+..|.-+..-.+..|. .+...++++.+.+.+.+
T Consensus 124 lvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgid 203 (532)
T KOG4464|consen 124 LVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGID 203 (532)
T ss_pred HHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCC
Confidence 999899999998888877777776632 1112222233333333332333444 44566778888777741
Q ss_pred C---------CchhHHHHHHHHhhhhccCC
Q 009636 213 Q---------PKLSMLRNATWTLSNFCRGK 233 (530)
Q Consensus 213 ~---------~~~~~~~~a~~~L~~L~~~~ 233 (530)
+ .+.....-++.++.|++.+.
T Consensus 204 se~n~~~l~pqe~n~a~EaLK~~FNvt~~~ 233 (532)
T KOG4464|consen 204 SEINVPPLNPQETNRACEALKVFFNVTCDS 233 (532)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHhheeecc
Confidence 1 11233444556666766654
No 306
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=80.14 E-value=17 Score=34.26 Aligned_cols=122 Identities=16% Similarity=0.148 Sum_probs=73.6
Q ss_pred cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHh----ccC--------CCChHHHHHHHHHHH
Q 009636 371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCD----LLV--------CPDPRIVTVCLEGLE 438 (530)
Q Consensus 371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~----lL~--------~~~~~~~~~al~~l~ 438 (530)
++|.++.++++.++.+|..++.+|..+........-..|.+.|..+.+.+ ++. .+...+...+..++.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 78999999999999999999999999998655443233566676554433 333 345568888888988
Q ss_pred HHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009636 439 NILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL 495 (530)
Q Consensus 439 ~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~ 495 (530)
.++......... ........+-..|.+..+..-...+.+++.....+.+..+..
T Consensus 200 ~L~~~~~~~~~~---~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~ 253 (282)
T PF10521_consen 200 SLLKTQENDDSN---PRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIID 253 (282)
T ss_pred HHHHhhccCCcc---cchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHH
Confidence 887654321110 111112222223333333333333357776666666655544
No 307
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=79.64 E-value=11 Score=31.19 Aligned_cols=72 Identities=19% Similarity=0.290 Sum_probs=56.0
Q ss_pred ChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHH-hcCCCHH---HHHHHHHH
Q 009636 414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESL-QTHDNAE---IYEKSVKL 489 (530)
Q Consensus 414 ~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l-~~~~~~~---v~~~a~~i 489 (530)
++..|..-|.+.++.++..|+..|..+++.+.. .|...+.....++.|..+ ..+.... |++++..+
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~----------~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~l 112 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGP----------RFHREVASKEFLDELVKLIKSKKTDPETPVKEKILEL 112 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHH----------HHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCH----------HHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHH
Confidence 466777778889999999999999999987633 266777777788888885 4455555 99999999
Q ss_pred HHHhCC
Q 009636 490 LETYWL 495 (530)
Q Consensus 490 l~~~~~ 495 (530)
|..|-.
T Consensus 113 l~~W~~ 118 (140)
T PF00790_consen 113 LQEWAE 118 (140)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998744
No 308
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=79.44 E-value=88 Score=33.01 Aligned_cols=157 Identities=18% Similarity=0.184 Sum_probs=88.9
Q ss_pred hHHHHHhhCC----CCHHHHHHHHHHHHhhhC----CCchhhhhHhhcCChHHHHHhhc---CCCchhHHHHHHHHhhhh
Q 009636 161 VPIFVKLLYS----PSDDVREQAVWALGNIAG----DSPRCRDLVLSQGGLVPLLAQLN---GQPKLSMLRNATWTLSNF 229 (530)
Q Consensus 161 i~~L~~ll~~----~~~~i~~~a~~~L~nl~~----~~~~~~~~i~~~~~i~~Ll~ll~---~~~~~~~~~~a~~~L~~L 229 (530)
+..+..++.+ ..+.++..|+.+++++.. +.+.+. .......++.+...+. ...+..-+..++.+|.|+
T Consensus 395 l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~ 473 (574)
T smart00638 395 LKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCP-DFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA 473 (574)
T ss_pred HHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCC-hhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence 4566667654 356788888888887763 222111 1111235555655553 233455556677777777
Q ss_pred ccCCCCCChhhhhchHHHHHHhhc-C--CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC--CCchhHHH
Q 009636 230 CRGKPQPPFDQVSPALPALAHLIH-S--NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH--PSPSVLIP 304 (530)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~L~~ll~-~--~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~~~~~ 304 (530)
... ..++.+...+. . .+..++..|+++|..++...+...+ +.+++++.+ .++++|..
T Consensus 474 g~~----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~--------~~l~~i~~n~~e~~EvRia 535 (574)
T smart00638 474 GHP----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQ--------EVLLPIYLNRAEPPEVRMA 535 (574)
T ss_pred CCh----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHH--------HHHHHHHcCCCCChHHHHH
Confidence 543 23445555554 2 2467999999999988765444332 456666655 35667877
Q ss_pred HHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHH
Q 009636 305 ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346 (530)
Q Consensus 305 al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~ 346 (530)
|+..|... ++.. ..+..+...+..+.+..|+.
T Consensus 536 A~~~lm~t---~P~~-------~~l~~ia~~l~~E~~~QV~s 567 (574)
T smart00638 536 AVLVLMET---KPSV-------ALLQRIAELLNKEPNLQVAS 567 (574)
T ss_pred HHHHHHhc---CCCH-------HHHHHHHHHHhhcCcHHHHH
Confidence 77665432 2222 23556666666553455543
No 309
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=79.30 E-value=1.1e+02 Score=33.84 Aligned_cols=104 Identities=16% Similarity=0.242 Sum_probs=58.4
Q ss_pred hHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHH
Q 009636 329 LPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKF 408 (530)
Q Consensus 329 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~ 408 (530)
+|.|++-|.......+|.+...+++.+|... ...-...+|.+-..|.++++-||+.+...|.++...+- .++
T Consensus 970 ~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y-----Tam~d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~~~---vKw 1041 (1529)
T KOG0413|consen 970 MPMLVKELEYNTAHAIRNNIVLAMGDICSSY-----TAMTDRYIPMIAASLCDPSVIVRRQTIILLARLLQFGI---VKW 1041 (1529)
T ss_pred HHHHHHHHHhhhHHHHhcceeeeehhhHHHH-----HHHHHHhhHHHHHHhcCchHHHHHHHHHHHHHHHhhhh---hhc
Confidence 4444444444323344444444444444321 11223467888888888899999999999999987532 111
Q ss_pred HHHcC--ChHHHHhccCCCChHHHHHHHHHHHHHHHhh
Q 009636 409 LVIQG--CIKPLCDLLVCPDPRIVTVCLEGLENILKVG 444 (530)
Q Consensus 409 l~~~~--~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~ 444 (530)
.| ++..+..++ +.+++++..+--++..++..-
T Consensus 1042 ---~G~Lf~Rf~l~l~-D~~edIr~~a~f~~~~vL~~~ 1075 (1529)
T KOG0413|consen 1042 ---NGELFIRFMLALL-DANEDIRNDAKFYISEVLQSE 1075 (1529)
T ss_pred ---chhhHHHHHHHHc-ccCHHHHHHHHHHHHHHHhhc
Confidence 12 233344444 345667766666666666543
No 310
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=79.20 E-value=1e+02 Score=33.59 Aligned_cols=90 Identities=21% Similarity=0.201 Sum_probs=52.4
Q ss_pred CchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHH-----HHHHHHHHHHhcCCHHHHHH-HHHhCc
Q 009636 298 SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIK-----KEACWTVSNITAGNREQIQA-VIEANI 371 (530)
Q Consensus 298 ~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~-----~~a~~~L~nl~~~~~~~~~~-l~~~~~ 371 (530)
++.++.+|+.+|-|++...+......+ ..+-..+.++... +.+ .|-+. -.+... +...+.
T Consensus 675 Dpei~~~AL~vIincVc~pp~~r~s~i--------~~v~S~~g~~r~~l~~~~ks~--~le~~----l~~mw~~Vr~ndG 740 (1516)
T KOG1832|consen 675 DPEIIQPALNVIINCVCPPPTTRPSTI--------VAVGSQSGDRRIFLGAGTKSA--KLEQV----LRQMWEAVRGNDG 740 (1516)
T ss_pred CHHHHHHHHhhhheeecCCCCcchhhh--------hhccccCCCccccccCCCchH--HHHHH----HHHHHHHHhcCcc
Confidence 678999999999999988765432221 1111111011110 000 00000 011122 223578
Q ss_pred HHHHHHHHhcCc-----hhHHHHHHHHHHHhhcCC
Q 009636 372 IGPLVALLENAE-----FDIKKEAAWAISNATSGG 401 (530)
Q Consensus 372 i~~L~~ll~~~~-----~~v~~~a~~aL~nl~~~~ 401 (530)
|..|+.+++... .-+|..|+.+|.-++...
T Consensus 741 IkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~ 775 (1516)
T KOG1832|consen 741 IKILLKLLQYKNPPTTADCIRALACRVLLGLARDD 775 (1516)
T ss_pred HHHHHHHHhccCCCCcHHHHHHHHHHHHhccccCc
Confidence 999999998653 469999999999999854
No 311
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=79.16 E-value=25 Score=28.71 Aligned_cols=74 Identities=12% Similarity=0.007 Sum_probs=59.3
Q ss_pred cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCCh--HHHHHHHHHHHHHHHhh
Q 009636 371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDP--RIVTVCLEGLENILKVG 444 (530)
Q Consensus 371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~--~~~~~al~~l~~ll~~~ 444 (530)
++..|.+-+.++++.++..|+..|-.++.++.......+.+.+++..|..++..... .++..++..+.......
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f 113 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAF 113 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 456777888889999999999999999999887787888888999999998876433 37777777766665433
No 312
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=78.69 E-value=31 Score=35.05 Aligned_cols=143 Identities=16% Similarity=0.118 Sum_probs=86.3
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-------CHHHHHHHHHHHHHHhc
Q 009636 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-------YPQLQFEAAWALTNIAS 146 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~-------~~~i~~~a~~~L~~l~~ 146 (530)
.+.++.+.+.++++..+..|+..|+. ++-++. ++|.++.++..+- +-.+-....+.+..|..
T Consensus 208 Yy~~It~a~~g~~~~~r~eAL~sL~T------DsGL~~-----LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~ 276 (576)
T KOG2549|consen 208 YYKEITEACTGSDEPLRQEALQSLET------DSGLQQ-----LLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLD 276 (576)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcc------CccHHH-----HHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhc
Confidence 56788888888899899999888762 233443 4788888876532 24555666666666666
Q ss_pred CChhhHHHHHhCCChHHHHHhhCC----------CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCC-Cc
Q 009636 147 GTSEHTKVVIDHGAVPIFVKLLYS----------PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQ-PK 215 (530)
Q Consensus 147 ~~~~~~~~~~~~g~i~~L~~ll~~----------~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~-~~ 215 (530)
++...-.-.=+.++|.++..+-+ ....+|+.|+..+..+|.+....-+. +...++..+.+.+.+. ..
T Consensus 277 -Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~ 354 (576)
T KOG2549|consen 277 -NPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKP 354 (576)
T ss_pred -CCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCC
Confidence 44333222224567777776632 34678999999998888654432222 3444566666666433 23
Q ss_pred hhHHHHHHHHhhhh
Q 009636 216 LSMLRNATWTLSNF 229 (530)
Q Consensus 216 ~~~~~~a~~~L~~L 229 (530)
.....-++..|..|
T Consensus 355 ~st~YGai~gL~~l 368 (576)
T KOG2549|consen 355 LSTHYGAIAGLSEL 368 (576)
T ss_pred chhhhhHHHHHHHh
Confidence 33334444444443
No 313
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=78.42 E-value=45 Score=40.89 Aligned_cols=251 Identities=14% Similarity=0.066 Sum_probs=136.1
Q ss_pred HHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCC----CChh--hhhchHHHHH
Q 009636 176 REQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ----PPFD--QVSPALPALA 249 (530)
Q Consensus 176 ~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~----~~~~--~~~~~l~~L~ 249 (530)
...|.++++++-...... ...+..++.-.....+.+++..+..+++.+....+. .... .....+..+.
T Consensus 461 ~~~a~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll 534 (2341)
T KOG0891|consen 461 IQLAFKTLGGFKFSGYSL------TLFVQQCVDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALL 534 (2341)
T ss_pred HHHHHHHHhhhhhhhhhH------HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHH
Confidence 556788888775332211 112333333332667888888887766666655432 1111 1333344333
Q ss_pred Hhh-cCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCc
Q 009636 250 HLI-HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQA 328 (530)
Q Consensus 250 ~ll-~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~ 328 (530)
.+- ..+++.++......+. ..........+.+..+...+....-.++..+...+++++.+++.+.-.-+....
T Consensus 535 ~~aia~~~~~i~~~v~~~l~------~~~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~ 608 (2341)
T KOG0891|consen 535 TVAIADTDPDIRIRVLSSLN------ERFDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTL 608 (2341)
T ss_pred HHhccCCCcchhhhHHhhhc------cchhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHH
Confidence 332 2446666655544443 122233445566666777787888889999999999999988854433333333
Q ss_pred hHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHH
Q 009636 329 LPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKF 408 (530)
Q Consensus 329 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~ 408 (530)
+..+-.+..++ -..+...++.-+..+..+.+..+...++ .++..++..+.+.+..+.+.+..++..|+..+..+ .+.
T Consensus 609 l~~~s~l~~sg-~~r~~~~~a~~~~~~i~~~~~~i~~~v~-~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~-~~~ 685 (2341)
T KOG0891|consen 609 LELLTELEFSG-MARTKEESAKLLCELIISSPVLISPYVG-PILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEE-MVK 685 (2341)
T ss_pred HHHhchhhhcc-hHHhHHHHHHHhhHHHHHHHHHHHhhcC-chHHHHHHHHhccchhhHHHHHHHHHHHHHhccch-hhh
Confidence 33333333333 3333333333333333333333333332 45567777778888889999999999998765411 222
Q ss_pred HHHcCChHHHHhccC-CCChHHHHHHHHHHHHHHH
Q 009636 409 LVIQGCIKPLCDLLV-CPDPRIVTVCLEGLENILK 442 (530)
Q Consensus 409 l~~~~~i~~L~~lL~-~~~~~~~~~al~~l~~ll~ 442 (530)
..+ ..+..+.+.+. .....-+..+++++.++..
T Consensus 686 ~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s 719 (2341)
T KOG0891|consen 686 WVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLES 719 (2341)
T ss_pred ccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhc
Confidence 222 33444444333 3444556677777777764
No 314
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=78.42 E-value=93 Score=32.67 Aligned_cols=73 Identities=18% Similarity=0.150 Sum_probs=49.0
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChh-------hHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhh
Q 009636 116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE-------HTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIA 187 (530)
Q Consensus 116 g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~-------~~~~~~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~ 187 (530)
+-+..+|+.+++++ ++++..|+..+......+.. -.+.+.. -...|..+..+ .++..+..++.+|+-||
T Consensus 48 ~dLellVervqdpd-~~Lq~~aLe~lr~~irsStSSmtsvpkPlKFLrp--hy~~Lk~i~~~~~~~n~Kk~laDIlSvLa 124 (878)
T KOG2005|consen 48 GDLELLVERVQDPD-PDLQKAALESLREEIRSSTSSMTSVPKPLKFLRP--HYGVLKEIYESMADSNLKKWLADILSVLA 124 (878)
T ss_pred hhHHHHHHHhcCCC-hHHHHHHHHHHHHHHHhcccccccCCchhhhhcc--chhHHHHHHHhccCchhHhHHHHHHHHHh
Confidence 34888999999999 99999999999887764321 1222221 12334444433 45678888999999998
Q ss_pred CCCc
Q 009636 188 GDSP 191 (530)
Q Consensus 188 ~~~~ 191 (530)
....
T Consensus 125 mt~s 128 (878)
T KOG2005|consen 125 MTMS 128 (878)
T ss_pred eeec
Confidence 5544
No 315
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=78.06 E-value=44 Score=34.53 Aligned_cols=218 Identities=11% Similarity=-0.013 Sum_probs=114.8
Q ss_pred CCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhc--C---------CChhHHHHHHHHHHHhccCChHHHHHH
Q 009636 213 QPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH--S---------NDDEVLTDACWALSYLSDGTNDKIQAV 281 (530)
Q Consensus 213 ~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~--~---------~d~~v~~~a~~~l~~l~~~~~~~~~~~ 281 (530)
+++.++...+-..|..+... .....++..|..+.. . -++.++..++..|+.=. ...-
T Consensus 248 d~~~~V~~~ae~~LKr~~~~------~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~------~Aa~ 315 (501)
T PF13001_consen 248 DSNSSVSDRAEDLLKRLSVS------LEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSV------IAAT 315 (501)
T ss_pred CCcchHHHHHHHHHhhcCCC------CCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhH------HHHh
Confidence 34555656666566555544 122445555555544 1 24556665555543311 0001
Q ss_pred HHhCcHHHHHHhhCCC--CchhHHHHHHHH---hHhhcCCchhhHHHhhcCchHHHHHhhc-------CCCchhHHHHHH
Q 009636 282 IEAGVFPRLAEFLMHP--SPSVLIPALRTV---GNIVTGDDMQTQCVIEYQALPCLLNLLS-------GNYKKSIKKEAC 349 (530)
Q Consensus 282 ~~~~~l~~L~~lL~~~--~~~~~~~al~~L---~nl~~~~~~~~~~~~~~~~l~~L~~lL~-------~~~~~~v~~~a~ 349 (530)
.-..++..+..-+.+. +..++..++..+ ...........-..+...+...+.+.+. ...+...|..+.
T Consensus 316 ~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aY 395 (501)
T PF13001_consen 316 SFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAY 395 (501)
T ss_pred CCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHH
Confidence 1113333344444455 566777777777 5555544433222333334444444442 111567899999
Q ss_pred HHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHH-HHHHHcCChHHH-HhccCCCCh
Q 009636 350 WTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQI-KFLVIQGCIKPL-CDLLVCPDP 427 (530)
Q Consensus 350 ~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~-~~l~~~~~i~~L-~~lL~~~~~ 427 (530)
.+|+.++...+.... -+-+++..|.+-|..++++++..+-.||..++..-....- ........+..+ .........
T Consensus 396 e~lG~L~~~~p~l~~--~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 473 (501)
T PF13001_consen 396 ETLGLLAKRAPSLFS--KDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVR 473 (501)
T ss_pred HHHHHHHccCccccc--ccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhH
Confidence 999999987665421 1345788888888888899999999999988763211000 000001112222 222234445
Q ss_pred HHHHHHHHHHHHHHHhh
Q 009636 428 RIVTVCLEGLENILKVG 444 (530)
Q Consensus 428 ~~~~~al~~l~~ll~~~ 444 (530)
.++..++.....++...
T Consensus 474 ~~R~~avk~an~~fpf~ 490 (501)
T PF13001_consen 474 SCRYAAVKYANACFPFS 490 (501)
T ss_pred HHHHHHHHHHHHhCCcc
Confidence 57777777666665443
No 316
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=77.94 E-value=8.2 Score=41.66 Aligned_cols=130 Identities=16% Similarity=0.145 Sum_probs=91.3
Q ss_pred CHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHh
Q 009636 172 SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHL 251 (530)
Q Consensus 172 ~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~l 251 (530)
.+.++.++.-+|+++|--.....+ ..+|.|++-|..+....++.+.+-+++-+|... ..+....+|.+...
T Consensus 944 ~~~vra~~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y----Tam~d~YiP~I~~~ 1014 (1529)
T KOG0413|consen 944 SDKVRAVGVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY----TAMTDRYIPMIAAS 1014 (1529)
T ss_pred chHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH----HHHHHHhhHHHHHH
Confidence 346788888999999855443322 268889999988888888888888888888653 23456789999999
Q ss_pred hcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhc
Q 009636 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT 314 (530)
Q Consensus 252 l~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~ 314 (530)
|..+++-|+..++..|.+|....--. ....++-+++..|-+.+++++..|=.+++.+..
T Consensus 1015 L~Dp~~iVRrqt~ilL~rLLq~~~vK----w~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~ 1073 (1529)
T KOG0413|consen 1015 LCDPSVIVRRQTIILLARLLQFGIVK----WNGELFIRFMLALLDANEDIRNDAKFYISEVLQ 1073 (1529)
T ss_pred hcCchHHHHHHHHHHHHHHHhhhhhh----cchhhHHHHHHHHcccCHHHHHHHHHHHHHHHh
Confidence 99999999999999999987543211 111223334444455666777777666666643
No 317
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=77.87 E-value=63 Score=33.76 Aligned_cols=161 Identities=11% Similarity=0.050 Sum_probs=79.7
Q ss_pred CCChhHHHHHHHHHHHhccCChHHHHH---HHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhc--Cc
Q 009636 254 SNDDEVLTDACWALSYLSDGTNDKIQA---VIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEY--QA 328 (530)
Q Consensus 254 ~~d~~v~~~a~~~l~~l~~~~~~~~~~---~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~--~~ 328 (530)
.-..+.+..++-++..+..+....... .....++..++..+. .++..+..++++|.|+..+ +...+.+... .+
T Consensus 555 ~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~~~~i 632 (745)
T KOG0301|consen 555 QWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMSRLESI 632 (745)
T ss_pred cCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHHHHHHH
Confidence 344556666777776666544322111 112235555555555 5677888999999999976 4333333221 12
Q ss_pred hHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC-----chhHHHHHHHHHHHhhcCCCH
Q 009636 329 LPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA-----EFDIKKEAAWAISNATSGGTH 403 (530)
Q Consensus 329 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-----~~~v~~~a~~aL~nl~~~~~~ 403 (530)
+..+...-..+ +..++...+....|++.. .++.--+.+..+.|...+... +.+.....+.||++++...
T Consensus 633 ~~~~~~~~s~~-~knl~ia~atlaln~sv~---l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~-- 706 (745)
T KOG0301|consen 633 LDPVIEASSLS-NKNLQIALATLALNYSVL---LIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVD-- 706 (745)
T ss_pred hhhhhhhhccc-chhHHHHHHHHHHHHHHH---HHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhcccc--
Confidence 22222222222 455555544444454321 111111134444444444322 3445566678888888853
Q ss_pred HHHHHHHHcCChHHHHhcc
Q 009636 404 EQIKFLVIQGCIKPLCDLL 422 (530)
Q Consensus 404 ~~~~~l~~~~~i~~L~~lL 422 (530)
.....+...--+..+..-+
T Consensus 707 ~~~~~~A~~~~v~sia~~~ 725 (745)
T KOG0301|consen 707 ASVIQLAKNRSVDSIAKKL 725 (745)
T ss_pred HHHHHHHHhcCHHHHHHHH
Confidence 3344444444455554444
No 318
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=77.77 E-value=16 Score=30.20 Aligned_cols=74 Identities=11% Similarity=0.021 Sum_probs=57.9
Q ss_pred cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCC-hH---HHHHHHHHHHHHHHhh
Q 009636 371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPD-PR---IVTVCLEGLENILKVG 444 (530)
Q Consensus 371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~-~~---~~~~al~~l~~ll~~~ 444 (530)
++..|.+-|.++++.++..|+..|-.++.++...+...+....++..|..++.... .. |+..++..|...-...
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 55677788888999999999999999999887777778778888999999886433 22 7777777766665444
No 319
>PRK09169 hypothetical protein; Validated
Probab=77.56 E-value=1.8e+02 Score=35.57 Aligned_cols=16 Identities=25% Similarity=0.117 Sum_probs=7.8
Q ss_pred chhHHHHHHHHhhhhc
Q 009636 215 KLSMLRNATWTLSNFC 230 (530)
Q Consensus 215 ~~~~~~~a~~~L~~L~ 230 (530)
+..-..+++|+|+...
T Consensus 287 ~~Q~vAN~LNALSKwp 302 (2316)
T PRK09169 287 DPQGVANALNALSKWP 302 (2316)
T ss_pred CHHHHHHHHHHHHhCC
Confidence 4444455555555543
No 320
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=77.32 E-value=20 Score=35.94 Aligned_cols=112 Identities=12% Similarity=0.118 Sum_probs=62.8
Q ss_pred CchHHHHHhhcCCC---chhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCH
Q 009636 327 QALPCLLNLLSGNY---KKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTH 403 (530)
Q Consensus 327 ~~l~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~ 403 (530)
.+-..|..+|...+ .+.+|...+.+|.-|--.+. +.-..++..+..++..++...|.-+..-+...+.+.+.
T Consensus 16 ~FP~el~dLL~~~~~~lp~~Lr~~i~~~LiLLrNk~~-----i~~~~LL~lff~l~~~~dk~lRkllythiv~~Ikn~n~ 90 (616)
T KOG2229|consen 16 NFPSELKDLLRTNHTVLPPELREKIVKALILLRNKNL-----IVAEDLLELFFPLLRCGDKNLRKLLYTHIVTTIKNINK 90 (616)
T ss_pred hhhHHHHHHHHhccccCCHHHHHHHHHHHHHHhccCc-----CCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHh
Confidence 44556777776543 57888888888776643221 11224677888888888877776665444433332211
Q ss_pred HHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHh
Q 009636 404 EQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKV 443 (530)
Q Consensus 404 ~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~ 443 (530)
.....=...-+-..+..+|+.+++.--..++..++-|.+.
T Consensus 91 ~~kn~klnkslq~~~fsml~~~d~~~ak~a~~~~~eL~kr 130 (616)
T KOG2229|consen 91 KHKNDKLNKSLQAFMFSMLDQSDSTAAKMALDTMIELYKR 130 (616)
T ss_pred hcccchHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHh
Confidence 1111111112344567888888887555555555555443
No 321
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.05 E-value=1.4e+02 Score=34.38 Aligned_cols=97 Identities=16% Similarity=0.104 Sum_probs=57.5
Q ss_pred CCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc------CCCchhHHHHHHHHhhhhccCC-CCCChhhhh
Q 009636 170 SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN------GQPKLSMLRNATWTLSNFCRGK-PQPPFDQVS 242 (530)
Q Consensus 170 ~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~------~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~ 242 (530)
.+..+++...+.++.++....-+ .++ .| .+.+.+++. ......+.+.+..+|.-++.+. +..+.....
T Consensus 853 ~~~~evr~~sl~~l~silet~ge---~ll-~~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~ 927 (1610)
T KOG1848|consen 853 SRGVEVRISSLEALVSILETVGE---HLL-HG-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCIL 927 (1610)
T ss_pred CccceeeHHHHHHHHHHHhccch---hhc-cc-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHH
Confidence 35566777777788777643321 111 12 334444432 1225567777777888888776 666677777
Q ss_pred chHHHHHHhhcC-CChhHHHHHHHHHHHhc
Q 009636 243 PALPALAHLIHS-NDDEVLTDACWALSYLS 271 (530)
Q Consensus 243 ~~l~~L~~ll~~-~d~~v~~~a~~~l~~l~ 271 (530)
+++..+..+... .|..+--.++..++.++
T Consensus 928 ~lidtl~~fs~QktdlNISltAi~lfWtvs 957 (1610)
T KOG1848|consen 928 DLIDTLLVFSRQKTDLNISLTAIGLFWTVS 957 (1610)
T ss_pred HHHHHHHHHHhhhccccccHHHHHHHHHHH
Confidence 888877776653 45555555555555544
No 322
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=76.59 E-value=51 Score=28.78 Aligned_cols=71 Identities=20% Similarity=0.251 Sum_probs=54.4
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchh
Q 009636 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC 193 (530)
Q Consensus 117 ~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~ 193 (530)
.++.++++..+++ ..++..|+.++..+....--+- ...+|.|+.+..++++.++..|...+..+..-.+..
T Consensus 9 yl~~Il~~~~~~~-~~vr~~Al~~l~~il~qGLvnP-----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~ 79 (187)
T PF12830_consen 9 YLKNILELCLSSD-DSVRLAALQVLELILRQGLVNP-----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESL 79 (187)
T ss_pred HHHHHHHHHhCCC-HHHHHHHHHHHHHHHhcCCCCh-----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHH
Confidence 3666777777777 8999999999988776321111 124799999999999999999999999998665543
No 323
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=76.35 E-value=35 Score=38.42 Aligned_cols=236 Identities=17% Similarity=0.182 Sum_probs=126.7
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHH--------HhhcCCCCHHHHHHHHHHHHHHh
Q 009636 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFV--------EFLLREDYPQLQFEAAWALTNIA 145 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv--------~ll~~~~~~~i~~~a~~~L~~l~ 145 (530)
.+..|++.+-++.+++|.-++.+++.++..+....-...++.-++..+. ++..+.--..++..++|+|+.+.
T Consensus 78 ~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~l 157 (1549)
T KOG0392|consen 78 FLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAYL 157 (1549)
T ss_pred HHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHH
Confidence 5677888888999999999999999998765322222222222222111 11111112368899999999888
Q ss_pred cCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhh--cCChHHHHHhhcCCCchhHHHHHH
Q 009636 146 SGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLS--QGGLVPLLAQLNGQPKLSMLRNAT 223 (530)
Q Consensus 146 ~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~--~~~i~~Ll~ll~~~~~~~~~~~a~ 223 (530)
..-.... + ...+..+.+++..+..+++...+..+..... ..++.+.. ..+++..+.-+ .+.+..++..|.
T Consensus 158 ~~~~~s~--~--~~~~~il~q~~~q~~w~ir~Ggll~iky~~a---ir~d~l~~~~~~vl~~~i~~L-~ds~ddv~~~aa 229 (1549)
T KOG0392|consen 158 KHMDESL--I--KETLDILLQMLRQPNWEIRHGGLLGIKYNVA---IRQDLLFQLLNLVLDFVIEGL-EDSDDDVRSVAA 229 (1549)
T ss_pred HhhhhHh--h--HHHHHHHHHHHcCcchhheechHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhh-hhcchHHHHHHH
Confidence 7322211 1 1346677788877767666655544433221 01111110 01333444445 566778888888
Q ss_pred HHhhhhccCCCCCChhhhhchHHHHHHhhcCCCh-h-HHHHHHHHHHHhccCChH---HHHHHHHhCcHHHHHHhhCCCC
Q 009636 224 WTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDD-E-VLTDACWALSYLSDGTND---KIQAVIEAGVFPRLAEFLMHPS 298 (530)
Q Consensus 224 ~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~-~-v~~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~L~~lL~~~~ 298 (530)
.++.-...............++..+..++..-+. . -.......+..++...+. ..+.-...|+++.+..++.+.=
T Consensus 230 ~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~~i 309 (1549)
T KOG0392|consen 230 QFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLRHTI 309 (1549)
T ss_pred HHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHHHHH
Confidence 8777666554333333333444444433322211 0 001111122222222210 0111223488999999998887
Q ss_pred chhHHHHHHHHhHhhcCCc
Q 009636 299 PSVLIPALRTVGNIVTGDD 317 (530)
Q Consensus 299 ~~~~~~al~~L~nl~~~~~ 317 (530)
..++..++..+..+....+
T Consensus 310 ~sv~~a~l~~l~~lle~~~ 328 (1549)
T KOG0392|consen 310 SSVRRAALETLAMLLEADD 328 (1549)
T ss_pred HHHHHHHHHHHHHHHhcCC
Confidence 7888888888888876543
No 324
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.17 E-value=1.4e+02 Score=33.44 Aligned_cols=78 Identities=14% Similarity=0.165 Sum_probs=55.5
Q ss_pred HHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccC---CCChHHHHHHHHHHHH
Q 009636 363 IQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV---CPDPRIVTVCLEGLEN 439 (530)
Q Consensus 363 ~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~---~~~~~~~~~al~~l~~ 439 (530)
.+.+...|++..+++.+-...++.+.+-+..+..++.. ++.....+...|+++.|+.++. +........++.++..
T Consensus 901 k~~iynagavRvlirslLlnypK~qlefl~lleSlaRa-spfnaelltS~gcvellleIiypflsgsspfLshalkIvem 979 (2799)
T KOG1788|consen 901 KQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARA-SPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKIVEM 979 (2799)
T ss_pred HhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhc-CCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHHHHH
Confidence 45667889999999988877889999999999999886 4456666667788888777664 2333344445555544
Q ss_pred HH
Q 009636 440 IL 441 (530)
Q Consensus 440 ll 441 (530)
+.
T Consensus 980 Lg 981 (2799)
T KOG1788|consen 980 LG 981 (2799)
T ss_pred Hh
Confidence 43
No 325
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=75.93 E-value=17 Score=35.37 Aligned_cols=103 Identities=15% Similarity=0.190 Sum_probs=61.3
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC------CHHHHHHHHHHHHHHhcC
Q 009636 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED------YPQLQFEAAWALTNIASG 147 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~------~~~i~~~a~~~L~~l~~~ 147 (530)
-+..+.+.+.+++...+..|+..|+. ++.+. .++|.|+.++...- +-......++.+..|..
T Consensus 179 yf~~It~a~~~~~~~~r~~aL~sL~t------D~gl~-----~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~- 246 (343)
T cd08050 179 YFEEITEALVGSNEEKRREALQSLRT------DPGLQ-----QLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLD- 246 (343)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhcc------CCCch-----hhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhc-
Confidence 34555555666666666666666552 22232 25888888876541 14445556666666666
Q ss_pred ChhhHHHHHhCCChHHHHHhhCC----------CCHHHHHHHHHHHHhhhC
Q 009636 148 TSEHTKVVIDHGAVPIFVKLLYS----------PSDDVREQAVWALGNIAG 188 (530)
Q Consensus 148 ~~~~~~~~~~~g~i~~L~~ll~~----------~~~~i~~~a~~~L~nl~~ 188 (530)
++...-...-+.++|.++..+-+ ....+|+.|+.+|+.+|.
T Consensus 247 N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~ 297 (343)
T cd08050 247 NPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICR 297 (343)
T ss_pred CCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHH
Confidence 33332222223467888876622 346899999999999983
No 326
>PF08711 Med26: TFIIS helical bundle-like domain; InterPro: IPR017923 Transcription factor IIS (TFIIS) is a transcription elongation factor that increases the overall transcription rate of RNA polymerase II by reactivating transcription elongation complexes that have arrested transcription. The three structural domains of TFIIS are conserved from yeast to human. The 80 or so N-terminal residues form a protein interaction domain containing a conserved motif, which has been called the LW motif because of the invariant leucine and tryptophan residues it contains. Although the N-terminal domain is not needed for transcriptional activity, a similar sequence has been identified in other transcription factors and proteins that are predominantly nuclear localized [, ]: MED26 (also known as CRSP70 and ARC70), a subunit of the Mediator complex, which is required for the activity of the enhancer-binding protein Sp1. Elongin A, a subunit of a transcription elongation factor previously known as SIII. It increases the rate of transcription by suppressing transient pausing of the elongation complex. PPP1R10, a nuclear regulatory subunit of protein phosphatase 1 that was previously known as p99, FB19 or PNUTS. PIBP, a small hypothetical protein that could be a phosphoinositide binding protein. IWS1, which is thought to function in both transcription initiation and elongation. The TFIIS N-terminal domain is a compact four-helix bundle. The hydrophobic core residues of helices 2, 3, and 4 are well conserved among TFIIS domains, although helix 1 is less conserved []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0005634 nucleus; PDB: 1EO0_A 3OAK_A 3NFQ_B 3O8Z_A 1WJT_A 2XPL_A 2XPO_A 2XPP_A 2XPN_A.
Probab=75.67 E-value=9.5 Score=25.24 Aligned_cols=35 Identities=17% Similarity=0.384 Sum_probs=30.8
Q ss_pred HHHhhhhccHHHHHHHhcC-CCHHHHHHHHHHHHHh
Q 009636 459 TQMIDDAEGLEKIESLQTH-DNAEIYEKSVKLLETY 493 (530)
Q Consensus 459 ~~~l~~~~~~~~l~~l~~~-~~~~v~~~a~~il~~~ 493 (530)
.+.+.+.|.-..+..|..+ ++++|...|..++.++
T Consensus 13 ~~~L~~T~IGk~V~~l~k~~~~~~i~~~A~~Li~~W 48 (53)
T PF08711_consen 13 VELLKSTGIGKAVNKLRKHSENPEIRKLAKELIKKW 48 (53)
T ss_dssp HHHHHHHSHHHHHHHHHHCTS-HHHHHHHHHHHHHH
T ss_pred HHHHHhCChhHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 6778889999999999888 9999999999999886
No 327
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=75.48 E-value=15 Score=29.13 Aligned_cols=71 Identities=15% Similarity=0.222 Sum_probs=51.3
Q ss_pred ChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHH-----h-cCCCHHHHHHHH
Q 009636 414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESL-----Q-THDNAEIYEKSV 487 (530)
Q Consensus 414 ~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l-----~-~~~~~~v~~~a~ 487 (530)
++..|..-|.+.++.++..+|..|..+++.+... |...+.....+..+..+ . ...+..|++++.
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~----------f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~ 107 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGER----------FHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAI 107 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHH----------HHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHH
Confidence 4666767777889999999999999999887542 45555555544444321 1 346889999999
Q ss_pred HHHHHhC
Q 009636 488 KLLETYW 494 (530)
Q Consensus 488 ~il~~~~ 494 (530)
.+++.+.
T Consensus 108 ~l~~~w~ 114 (115)
T cd00197 108 ELVQLWA 114 (115)
T ss_pred HHHHHHh
Confidence 9998774
No 328
>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Probab=74.78 E-value=13 Score=26.86 Aligned_cols=36 Identities=19% Similarity=0.375 Sum_probs=31.9
Q ss_pred HHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009636 459 TQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW 494 (530)
Q Consensus 459 ~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~ 494 (530)
.+.+.+.+.-..+..|..|++++|...|..++..|-
T Consensus 37 ~~~L~~T~iG~~V~~Lrkh~~~~i~~~A~~Lv~~Wk 72 (76)
T cd00183 37 VEILKETRIGKKVNSLRKHSNEKIRKLAKALIKSWK 72 (76)
T ss_pred HHHHHHCCHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 667888888889999999999999999999998763
No 329
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=74.74 E-value=81 Score=30.17 Aligned_cols=145 Identities=12% Similarity=0.066 Sum_probs=87.6
Q ss_pred CchhHHHHHHHHhHhhcCCchhhHHHhhc-----------CchHHHHHhhc------CCCchhHHHHHHHHHHHHhcCCH
Q 009636 298 SPSVLIPALRTVGNIVTGDDMQTQCVIEY-----------QALPCLLNLLS------GNYKKSIKKEACWTVSNITAGNR 360 (530)
Q Consensus 298 ~~~~~~~al~~L~nl~~~~~~~~~~~~~~-----------~~l~~L~~lL~------~~~~~~v~~~a~~~L~nl~~~~~ 360 (530)
.-.+|..|+.++.....++++....++.. .....|+..|- .. ++--...|+.++..+..+++
T Consensus 51 ~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~-dpy~~wfAa~il~hll~dn~ 129 (312)
T PF04869_consen 51 PFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSL-DPYRCWFAAVILMHLLRDNP 129 (312)
T ss_dssp -HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS--HHHHHHHHHHHHHHHTT-H
T ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccC-CHHHHHHHHHHHHHHHhcCH
Confidence 35688899999999998877666555421 11112444443 22 44445678889999988887
Q ss_pred HHHHHHHHh------------CcHHHHHHHHhc-----CchhHHHHHHHHHHHhhcCCCHHHHHHHHHcC-ChHHHHhcc
Q 009636 361 EQIQAVIEA------------NIIGPLVALLEN-----AEFDIKKEAAWAISNATSGGTHEQIKFLVIQG-CIKPLCDLL 422 (530)
Q Consensus 361 ~~~~~l~~~------------~~i~~L~~ll~~-----~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~-~i~~L~~lL 422 (530)
.....+..- ..++.+..+|.. .+++++..-+..|+-.... ++..+..++..+ -++.|+...
T Consensus 130 ~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e-~p~AV~~FL~~~s~l~~Li~~~ 208 (312)
T PF04869_consen 130 EAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFE-CPDAVNDFLSEGSNLQSLIEFS 208 (312)
T ss_dssp HHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT--HHHHHHHHCSTTHHHHHHHHH
T ss_pred HHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhC-CHHHHHHHHcCcchHHHHHHHh
Confidence 776655421 135666665543 3677888778888887776 677777777664 688888865
Q ss_pred C---CCChHHHHHHHHHHHHHHHhh
Q 009636 423 V---CPDPRIVTVCLEGLENILKVG 444 (530)
Q Consensus 423 ~---~~~~~~~~~al~~l~~ll~~~ 444 (530)
. +.+.-++-.+.-.|+....+.
T Consensus 209 ~~~~~~~~~VqGL~A~LLGicyef~ 233 (312)
T PF04869_consen 209 NQSSSEDVLVQGLCAFLLGICYEFS 233 (312)
T ss_dssp S--TCCCHHHHHHHHHHHHHHHHT-
T ss_pred hcCCCCcchHHHHHHHHHHHHHHhc
Confidence 3 234445555555566555555
No 330
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=74.69 E-value=42 Score=32.82 Aligned_cols=154 Identities=18% Similarity=0.080 Sum_probs=90.5
Q ss_pred HHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhc----------CCChhHHHHHHHHHHHhccCC
Q 009636 205 PLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH----------SNDDEVLTDACWALSYLSDGT 274 (530)
Q Consensus 205 ~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~----------~~d~~v~~~a~~~l~~l~~~~ 274 (530)
.++..|.+......+..++.++.-|+++............+..|+.+-. ..|..+...++.||+|+..++
T Consensus 49 ~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~S 128 (532)
T KOG4464|consen 49 RIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFHS 128 (532)
T ss_pred HHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhcc
Confidence 3445553333344555666677777777654444444555555555432 235578999999999999988
Q ss_pred hHHHHHHHHhCcHHHHHHhhCCC----C-chhHHHHHHHHhHhhcC-CchhhHHHhhcCchHHHHHhhcCCC--------
Q 009636 275 NDKIQAVIEAGVFPRLAEFLMHP----S-PSVLIPALRTVGNIVTG-DDMQTQCVIEYQALPCLLNLLSGNY-------- 340 (530)
Q Consensus 275 ~~~~~~~~~~~~l~~L~~lL~~~----~-~~~~~~al~~L~nl~~~-~~~~~~~~~~~~~l~~L~~lL~~~~-------- 340 (530)
....+..........+++.+... - ..+...-++.|--+..- .+...+.+.+.++++.+-.++.+..
T Consensus 129 q~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~n~ 208 (532)
T KOG4464|consen 129 QRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEINV 208 (532)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCcCC
Confidence 87777777766666666665331 1 11222222322222221 2344555668888898888886421
Q ss_pred ------chhHHHHHHHHHHHHhcC
Q 009636 341 ------KKSIKKEACWTVSNITAG 358 (530)
Q Consensus 341 ------~~~v~~~a~~~L~nl~~~ 358 (530)
+.....++..++.|++..
T Consensus 209 ~~l~pqe~n~a~EaLK~~FNvt~~ 232 (532)
T KOG4464|consen 209 PPLNPQETNRACEALKVFFNVTCD 232 (532)
T ss_pred CCCCHHHHHHHHHHHHHHhheeec
Confidence 123445677888888763
No 331
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=74.03 E-value=77 Score=29.56 Aligned_cols=64 Identities=16% Similarity=0.258 Sum_probs=44.7
Q ss_pred hhhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 009636 69 AKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS 146 (530)
Q Consensus 69 ~~~~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~ 146 (530)
+..++.+..|...|+.+|+..+ .+.+++... .+++..++|.|+..-. + +.+...++..|.+++-
T Consensus 9 ~dcl~~LkdL~r~lr~dd~~~~-~v~r~lg~~----------~iv~~DLiPiL~~~~~--~-~~l~~~~l~LLV~LT~ 72 (266)
T PF04821_consen 9 DDCLECLKDLKRFLRRDDEDQR-DVRRQLGEW----------NIVQKDLIPILISYKD--D-DKLFLACLRLLVNLTW 72 (266)
T ss_pred HhHHHHHHHHHHHHHHhCcchH-HHHHHHHHh----------chhhhhHHHHHHhccC--c-hHHHHHHHHHHHHhCC
Confidence 3355788899999998887665 444444432 1344567787776533 3 7899999999999987
No 332
>PF11538 Snurportin1: Snurportin1; InterPro: IPR024721 Snurportin-1 is a nuclear import receptor that contains an N-terminal importin beta binding domain which is essential for its function as an snRNP-specific nuclear import receptor []. Snurportin-1 interacts with m3G-cap where it enhances the m3G-cap dependent nuclear import of U snRNPs in Xenopus laevis oocytes and digitonin-permeabilized HeLa cells []. This entry represents the snurportin-1 N-terminal importin beta binding domain (IBB). The essential role of the IBB domain for snurportin-1 function suggests that snurportin-1 cooperates with importin beta in mediating nuclear import of snRNPs.; GO: 0005515 protein binding; PDB: 3LWW_D 3NC0_E 3NBZ_E 2Q5D_C 3NBY_B 3GB8_B 3GJX_B 2QNA_B 2P8Q_B.
Probab=73.63 E-value=3.6 Score=25.36 Aligned_cols=38 Identities=32% Similarity=0.430 Sum_probs=23.8
Q ss_pred HhhhhcCCCCCchHHhhhhhhHHHHHHHHhhhHHHHhhh
Q 009636 11 SRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKR 49 (530)
Q Consensus 11 ~~~~~~k~~~~~~e~~~~r~~~~~~lRk~~r~~~l~~~R 49 (530)
+|...||+.+++.+..+||+ ...+.-|.+|-+..+..|
T Consensus 2 PR~sqYK~~~~~~~Q~eRR~-~~Le~QK~kR~d~~~~aR 39 (40)
T PF11538_consen 2 PRLSQYKNKGSALDQEERRR-EFLERQKNKRLDYVNHAR 39 (40)
T ss_dssp TTCSCTT-TTTSCSHHHHHH-HHHHHHHSHHSHHHHHHH
T ss_pred ccHHHhhcccchHhHHHHHH-HHHHHHHHHhHHHHHhcc
Confidence 46778998656555555554 445666777777766655
No 333
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=73.19 E-value=34 Score=34.94 Aligned_cols=84 Identities=17% Similarity=0.190 Sum_probs=58.0
Q ss_pred HHHHHHHHhCcHHHHHHHHhcC-chhHHHHHHHHHHHhhcCC------------CHHHHHHHHHcCChHHHHhcc-CCCC
Q 009636 361 EQIQAVIEANIIGPLVALLENA-EFDIKKEAAWAISNATSGG------------THEQIKFLVIQGCIKPLCDLL-VCPD 426 (530)
Q Consensus 361 ~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~~~------------~~~~~~~l~~~~~i~~L~~lL-~~~~ 426 (530)
..+..+.+.++++.|+.+|... +..++..|+.+|+.++... .....+.|.+...+..|++.+ ....
T Consensus 53 ~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~ 132 (475)
T PF04499_consen 53 GILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQG 132 (475)
T ss_pred HHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCC
Confidence 4455566789999999999744 7889999998888876532 235566777777788776644 3233
Q ss_pred hHHHHHHHHHHHHHHHhh
Q 009636 427 PRIVTVCLEGLENILKVG 444 (530)
Q Consensus 427 ~~~~~~al~~l~~ll~~~ 444 (530)
......++..+..+++..
T Consensus 133 ~s~lvn~v~IlieLIRkn 150 (475)
T PF04499_consen 133 GSSLVNGVSILIELIRKN 150 (475)
T ss_pred cchHHHHHHHHHHHHHhc
Confidence 445556777777777544
No 334
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=72.66 E-value=99 Score=30.20 Aligned_cols=250 Identities=10% Similarity=0.114 Sum_probs=125.2
Q ss_pred cCCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChh-
Q 009636 72 LENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE- 150 (530)
Q Consensus 72 ~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~- 150 (530)
.+.++.+++..+.+.-+-| .|.+.+-+..... ..-.+ .++..-+++..+.+ ..++.+|++-|-.+|.++.-
T Consensus 24 v~~y~~il~~~k~~~k~k~-lasq~ip~~fk~f-p~la~-----~a~da~~d~~ed~d-~~ir~qaik~lp~fc~~d~~~ 95 (460)
T KOG2213|consen 24 VDDYEGILKAVKGTSKEKR-LASQFIPRFFKHF-PSLAD-----EAIDAQLDLCEDDD-VGIRRQAIKGLPLFCKGDALS 95 (460)
T ss_pred HHHHHHHHHHhhcchHHHH-HHHHHHHHHHhhC-chhhh-----HHHHhhhccccccc-hhhHHHHHhccchhccCchhh
Confidence 3566777777776554444 5677777776553 22222 24556678888887 89999999999999986311
Q ss_pred ----hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHh-hhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHH
Q 009636 151 ----HTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGN-IAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWT 225 (530)
Q Consensus 151 ----~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~n-l~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~ 225 (530)
....+...+-+..|.......+..+++.++..|.. +..-.++.-..-++..++..+-+.| .+-+.+-....+..
T Consensus 96 rv~d~l~qLLnk~sl~~Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal-~dVtgeef~lfm~~ 174 (460)
T KOG2213|consen 96 RVNDVLVQLLNKASLTGLFGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKAL-EDVTGEEFTLFMDI 174 (460)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHH-HhccHHHHHHHHHH
Confidence 11112223334444444444577788877766543 2222222212222333444444444 33334444555666
Q ss_pred hhhhccCCCCCChhhhhchH---HHHHHh--hcCCChhHHHHHHHHH----HHhccCChH-HHHHHHHhCcHHHHHHhhC
Q 009636 226 LSNFCRGKPQPPFDQVSPAL---PALAHL--IHSNDDEVLTDACWAL----SYLSDGTND-KIQAVIEAGVFPRLAEFLM 295 (530)
Q Consensus 226 L~~L~~~~~~~~~~~~~~~l---~~L~~l--l~~~d~~v~~~a~~~l----~~l~~~~~~-~~~~~~~~~~l~~L~~lL~ 295 (530)
|.++..............++ ..+..+ +.-.|.+.....+.|+ -..+.+.+. ..-..+...+++. ...
T Consensus 175 L~~lk~~~~k~~~a~lqeLa~~~e~~a~ldaf~~sD~d~VdRfisCl~~AvPfFargapSskf~~y~n~~~ip~---~fd 251 (460)
T KOG2213|consen 175 LASLKSLQTKAGEARLQELAEEQEGLADLDAFNVSDADYVDRFISCLLMAVPFFARGAPSSKFVEYLNKHIIPH---HFD 251 (460)
T ss_pred HHhhhcccCCCCHHHHHHHHHHHhhhhccCcccCCChHHHHHHHHHHHHhhhhhhcCCchhHHHHHHHhhhccc---ccc
Confidence 66666554222222222222 222222 4445665555544444 333433322 1111222233332 111
Q ss_pred CCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhc
Q 009636 296 HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLS 337 (530)
Q Consensus 296 ~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~ 337 (530)
......+...+.+|+.++..+..+.. ...+|.++.+|.
T Consensus 252 kl~e~rkL~lLK~lAEMss~ttaq~a----~q~Lpsi~elLk 289 (460)
T KOG2213|consen 252 KLTEERKLDLLKALAEMSSYTTAQAA----RQMLPSIVELLK 289 (460)
T ss_pred cchHHHHHHHHHHHHHhCccchHHHH----HHHHHHHHHHHH
Confidence 12345677788888888876643322 223455555543
No 335
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=71.52 E-value=68 Score=27.83 Aligned_cols=81 Identities=9% Similarity=0.027 Sum_probs=54.8
Q ss_pred CcHHHHHHhhCCCCchhHHHHHHHHhHhhcC-CchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHH
Q 009636 285 GVFPRLAEFLMHPSPSVLIPALRTVGNIVTG-DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQI 363 (530)
Q Consensus 285 ~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~-~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~ 363 (530)
..++.+++=|...+...+-.|...+..+... ..+.. .-+-..++..|...|.+. ++++...++.+|..++..++..-
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~ki-lPvlPqLI~plk~AL~tr-~~~V~~~~L~~Lq~Lv~~~~~vG 115 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKI-LPVLPQLIIPLKRALNTR-DPEVFCATLKALQQLVTSSDMVG 115 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHH-HHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhhhhhh
Confidence 4566666667666777777777777777655 22222 222346778888889988 99999999999999966544433
Q ss_pred HHHH
Q 009636 364 QAVI 367 (530)
Q Consensus 364 ~~l~ 367 (530)
..++
T Consensus 116 ~aLv 119 (183)
T PF10274_consen 116 EALV 119 (183)
T ss_pred HHHH
Confidence 3343
No 336
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=71.29 E-value=88 Score=30.09 Aligned_cols=185 Identities=11% Similarity=0.101 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHh-hCC---CC-----chhHHHHHHHHhHhhcCCchhhHHHhhcCch
Q 009636 259 VLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEF-LMH---PS-----PSVLIPALRTVGNIVTGDDMQTQCVIEYQAL 329 (530)
Q Consensus 259 v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~l-L~~---~~-----~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l 329 (530)
++..++..+.......++. . .+...+++.++.. |.+ .. +.+......++..+-..-......++ ..++
T Consensus 43 iKkeIL~Li~t~i~~~~~~-~-~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~-~~vf 119 (319)
T PF08767_consen 43 IKKEILKLIETFISKAEDP-E-EVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQIL-EAVF 119 (319)
T ss_dssp HHHHHHHHHHHHHHT-S-H-H-HHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHhccCCH-H-HHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHH-HHHH
Confidence 3445555555544443322 2 2333566666653 321 23 33333333333333332333333444 3466
Q ss_pred HHHHHhhcCCC--chhHHHHHHHHHHHHhcCCHHHHHHHHH---hCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCC---
Q 009636 330 PCLLNLLSGNY--KKSIKKEACWTVSNITAGNREQIQAVIE---ANIIGPLVALLENAEFDIKKEAAWAISNATSGG--- 401 (530)
Q Consensus 330 ~~L~~lL~~~~--~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~--- 401 (530)
...+.++..+. -|+.|..-...|..+...+....-.+-. ..++..++-.+++.+.++...++.++..+....
T Consensus 120 ~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~ 199 (319)
T PF08767_consen 120 ECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKT 199 (319)
T ss_dssp HHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhc
Confidence 67777776542 4788888778888776643332221111 124556666778889999999999998887643
Q ss_pred CHHHHHHHHHcCChHHHHhcc----CCCChHHHHHHHHHHHHHHHhhhh
Q 009636 402 THEQIKFLVIQGCIKPLCDLL----VCPDPRIVTVCLEGLENILKVGEA 446 (530)
Q Consensus 402 ~~~~~~~l~~~~~i~~L~~lL----~~~~~~~~~~al~~l~~ll~~~~~ 446 (530)
+++....+.+...+..|..++ +..+...-......|..++...+.
T Consensus 200 ~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~~ve~ 248 (319)
T PF08767_consen 200 NPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFRLVES 248 (319)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHc
Confidence 346666667665555444433 334444444455677777765443
No 337
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=68.90 E-value=1.2e+02 Score=29.65 Aligned_cols=255 Identities=14% Similarity=0.141 Sum_probs=126.4
Q ss_pred HHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhc
Q 009636 164 FVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSP 243 (530)
Q Consensus 164 L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~ 243 (530)
++...+ ....-+..|...|.+.-.+-|...+. ++..-+.++ .+.+..+++.|+.-|-.+|.++ ....
T Consensus 30 il~~~k-~~~k~k~lasq~ip~~fk~fp~la~~-----a~da~~d~~-ed~d~~ir~qaik~lp~fc~~d------~~~r 96 (460)
T KOG2213|consen 30 ILKAVK-GTSKEKRLASQFIPRFFKHFPSLADE-----AIDAQLDLC-EDDDVGIRRQAIKGLPLFCKGD------ALSR 96 (460)
T ss_pred HHHHhh-cchHHHHHHHHHHHHHHhhCchhhhH-----HHHhhhccc-cccchhhHHHHHhccchhccCc------hhhh
Confidence 444444 34455677888888887776654443 566777888 7889999999999999999883 2233
Q ss_pred hHHHHHHhhc------------CCChhHHHHHHHHHHH-hccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHh
Q 009636 244 ALPALAHLIH------------SNDDEVLTDACWALSY-LSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG 310 (530)
Q Consensus 244 ~l~~L~~ll~------------~~d~~v~~~a~~~l~~-l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~ 310 (530)
+.+.|+++|. ..|..+++.++..|.. +..-..+....-++..+++.+-..|.+-...-.......|+
T Consensus 97 v~d~l~qLLnk~sl~~Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtgeef~lfm~~L~ 176 (460)
T KOG2213|consen 97 VNDVLVQLLNKASLTGLFGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTGEEFTLFMDILA 176 (460)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3344444443 2355666665555432 22223333333334445555555555544444444555566
Q ss_pred HhhcCC----chhhHHHhhcCchHHHHHh--hcCCCchhHHHHHH----HHHHHHhcCCHHH-HHHHHHhCcHHHHHHHH
Q 009636 311 NIVTGD----DMQTQCVIEYQALPCLLNL--LSGNYKKSIKKEAC----WTVSNITAGNREQ-IQAVIEANIIGPLVALL 379 (530)
Q Consensus 311 nl~~~~----~~~~~~~~~~~~l~~L~~l--L~~~~~~~v~~~a~----~~L~nl~~~~~~~-~~~l~~~~~i~~L~~ll 379 (530)
++.... ....+.+.+ ...-+..+ +.-+ +++....-. .++--++.+-+.. ....+...++|. ..
T Consensus 177 ~lk~~~~k~~~a~lqeLa~--~~e~~a~ldaf~~s-D~d~VdRfisCl~~AvPfFargapSskf~~y~n~~~ip~---~f 250 (460)
T KOG2213|consen 177 SLKSLQTKAGEARLQELAE--EQEGLADLDAFNVS-DADYVDRFISCLLMAVPFFARGAPSSKFVEYLNKHIIPH---HF 250 (460)
T ss_pred hhhcccCCCCHHHHHHHHH--HHhhhhccCcccCC-ChHHHHHHHHHHHHhhhhhhcCCchhHHHHHHHhhhccc---cc
Confidence 554432 111112211 01111111 2222 333322222 2222233332221 112223334443 01
Q ss_pred hcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCC------CChHHHHHHHHHHHHHHH
Q 009636 380 ENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC------PDPRIVTVCLEGLENILK 442 (530)
Q Consensus 380 ~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~------~~~~~~~~al~~l~~ll~ 442 (530)
.-...+.+...+.+|..|+...+.+.... .++.++++|.. .-++....-++|+.+++.
T Consensus 251 dkl~e~rkL~lLK~lAEMss~ttaq~a~q-----~Lpsi~elLk~yMpa~kt~ee~~fsyvEClly~~h 314 (460)
T KOG2213|consen 251 DKLTEERKLDLLKALAEMSSYTTAQAARQ-----MLPSIVELLKEYMPAPKTGEEMQFSYVECLLYALH 314 (460)
T ss_pred ccchHHHHHHHHHHHHHhCccchHHHHHH-----HHHHHHHHHHHhcccCCccHHHHHHHHHHHHHHHH
Confidence 11125788888999999988765444444 34455554431 233444445555555543
No 338
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=68.61 E-value=87 Score=34.22 Aligned_cols=145 Identities=17% Similarity=0.190 Sum_probs=93.1
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009636 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 153 (530)
.+..+...+..+++..-...+.++..+..-...++.. .... ++.-..-.+..- ..+......+|..++..+++...
T Consensus 442 lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~--~~~~-~~~~~~~~N~~~-~~~~~~~~~il~rls~~~~~~L~ 517 (727)
T PF12726_consen 442 LWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK--EKDE-LDPAKTQFNKSL-GQITDLISQILERLSDFDPSHLK 517 (727)
T ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc--cccC-cchHHHHHHHHH-HHHHHHHHHHHHHHhcCCHHHHH
Confidence 4666777777788887777777777776543222222 1111 111122212212 45667788899999998888888
Q ss_pred HHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009636 154 VVID-HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (530)
Q Consensus 154 ~~~~-~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~ 232 (530)
.++. .+....++.++-+++.++.+.|...|....... .|.. ++..+++ ..-........+++..+...
T Consensus 518 ~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~--~R~e-----~i~~ll~----~~~~~tL~ai~~~l~~~~~~ 586 (727)
T PF12726_consen 518 ELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVD--GRLE-----AIQALLQ----SNFSPTLSAINWSLRQLTKL 586 (727)
T ss_pred HHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCC--cHHH-----HHHHHHH----HhHHHHHHHHHHHHHHHHhh
Confidence 8775 678899999999999999999999999887422 2322 3333333 22345566777777777665
Q ss_pred C
Q 009636 233 K 233 (530)
Q Consensus 233 ~ 233 (530)
.
T Consensus 587 ~ 587 (727)
T PF12726_consen 587 K 587 (727)
T ss_pred h
Confidence 4
No 339
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=67.09 E-value=33 Score=27.10 Aligned_cols=70 Identities=7% Similarity=-0.019 Sum_probs=53.0
Q ss_pred cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhc-----c-CCCChHHHHHHHHHHHHH
Q 009636 371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDL-----L-VCPDPRIVTVCLEGLENI 440 (530)
Q Consensus 371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~l-----L-~~~~~~~~~~al~~l~~l 440 (530)
++..|..-+.+.++.++..|+..|-.++.+++..+...+....++..++.+ . ...+..++..++..+...
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 556777778888999999999999999999988888888777776666543 1 123567888777766543
No 340
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=66.42 E-value=1.3e+02 Score=29.02 Aligned_cols=180 Identities=11% Similarity=0.124 Sum_probs=105.7
Q ss_pred hHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHH-hhc---CC----CchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcH
Q 009636 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLN-LLS---GN----YKKSIKKEACWTVSNITAGNREQIQAVIEANII 372 (530)
Q Consensus 301 ~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~-lL~---~~----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i 372 (530)
++...+..+.......+... .+...+++.|+. +|. .. .++++-.-...++..+-....+.+..+++ .++
T Consensus 43 iKkeIL~Li~t~i~~~~~~~--~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~-~vf 119 (319)
T PF08767_consen 43 IKKEILKLIETFISKAEDPE--EVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILE-AVF 119 (319)
T ss_dssp HHHHHHHHHHHHHHT-S-HH--HHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHhccCCHH--HHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHH-HHH
Confidence 55666777766665544322 244456666655 332 11 13444444444444443333344444444 466
Q ss_pred HHHHHHHhcC---chhHHHHHHHHHHHhhcCC-------CHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHH
Q 009636 373 GPLVALLENA---EFDIKKEAAWAISNATSGG-------THEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILK 442 (530)
Q Consensus 373 ~~L~~ll~~~---~~~v~~~a~~aL~nl~~~~-------~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~ 442 (530)
...+.++..+ -|+.|..-...|..+...+ +++..+ .+++.+.-.+++.+.++...++.++..++.
T Consensus 120 ~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~-----~~idsi~wg~kh~~~~I~~~~L~~l~~ll~ 194 (319)
T PF08767_consen 120 ECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFK-----LVIDSIVWGFKHTNREISETGLNILLELLN 194 (319)
T ss_dssp HHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHH-----HHHHHHHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHH-----HHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 7777777654 3788888877777777643 222222 246677777789999999999999999998
Q ss_pred hhhhhhhcCCCCchhhHHHhhhhccHHHHHH----HhcCCCHHHHHHHHHHHHHhCC
Q 009636 443 VGEAEKNLGNTDVNVFTQMIDDAEGLEKIES----LQTHDNAEIYEKSVKLLETYWL 495 (530)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~----l~~~~~~~v~~~a~~il~~~~~ 495 (530)
..... ...+...|-..-.++.+.. +.+..+....+....++..+|.
T Consensus 195 ~~~~~-------~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~ 244 (319)
T PF08767_consen 195 NVSKT-------NPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFR 244 (319)
T ss_dssp HHHH--------SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHH
T ss_pred HHHhc-------CHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHH
Confidence 77651 1123444444444444443 4667777777777888888885
No 341
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=66.00 E-value=39 Score=28.06 Aligned_cols=102 Identities=16% Similarity=0.143 Sum_probs=55.2
Q ss_pred chHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHH
Q 009636 243 PALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQC 322 (530)
Q Consensus 243 ~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~ 322 (530)
.-...|+.+|+.+...-....+..|.+=..-..+. ...++.+++..++.-=.....--...|+..||.+..|..
T Consensus 22 ~Qt~~lielLk~~~~~~~~~lldLL~~RV~PGVD~-AA~VKA~FL~~ia~g~~~~~~Is~~~Av~LLGtM~GGYN----- 95 (154)
T PF11791_consen 22 EQTAELIELLKNPPAGEEAFLLDLLTNRVPPGVDE-AAYVKAEFLAAIAKGEISSPLISPAEAVELLGTMLGGYN----- 95 (154)
T ss_dssp HHHHHHHHHHHS--TT-HHHHHHHHHHSS--TT-H-HHHHHHHHHHHHHTTSS-BTTB-HHHHHHHHTTS-SSTT-----
T ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHhcCCCCCCh-HHHHHHHHHHHHHcCCccCCCcCHHHHHHHHhhccCCCc-----
Confidence 33445667776665443344555555543322222 234555665555443222233346678888888876554
Q ss_pred HhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009636 323 VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (530)
Q Consensus 323 ~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 357 (530)
+..|+.+|.+. +..+...|+.+|.+..-
T Consensus 96 ------V~~LI~~L~~~-d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 96 ------VQPLIDLLKSD-DEELAEEAAEALKNTLL 123 (154)
T ss_dssp ------HHHHHHGG--G--TTTHHHHHHHHHT--T
T ss_pred ------HHHHHHHHcCC-cHHHHHHHHHHHHhhHH
Confidence 67899999888 88999999999998654
No 342
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=65.36 E-value=69 Score=31.20 Aligned_cols=112 Identities=16% Similarity=0.126 Sum_probs=65.7
Q ss_pred hchHHHHHHhhcCC-------ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhC----------CCCchhHHH
Q 009636 242 SPALPALAHLIHSN-------DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM----------HPSPSVLIP 304 (530)
Q Consensus 242 ~~~l~~L~~ll~~~-------d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~----------~~~~~~~~~ 304 (530)
..++|.++.++... +-......+..+..|..+..-.....+. -+++.++.++- .+.|.+|..
T Consensus 209 ~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh-~Lip~vltclv~~~l~~~~~~~~h~~LRd~ 287 (343)
T cd08050 209 QQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLH-QLIPSVLTCLVAKQLCSRPPDDNHWALRDY 287 (343)
T ss_pred hhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHH-HHHHHHHHHhhhHhhcCCCCCchHHHHHHH
Confidence 45567766665422 4666777777777777776544443333 36677776652 234789999
Q ss_pred HHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchh-HHHHHHHHHHHH
Q 009636 305 ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKS-IKKEACWTVSNI 355 (530)
Q Consensus 305 al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~-v~~~a~~~L~nl 355 (530)
|..+++.++........ -+...+...+.+.+.++..+- ...-|...|..+
T Consensus 288 AA~ll~~i~~~f~~~y~-~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 288 AARLLAQICRKFSTSYN-TLQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 99999999864332221 133445556666666552232 244444455444
No 343
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=64.98 E-value=1.7e+02 Score=30.02 Aligned_cols=91 Identities=14% Similarity=0.194 Sum_probs=61.7
Q ss_pred hHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHh
Q 009636 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLE 380 (530)
Q Consensus 301 ~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~ 380 (530)
+...|+.-.+-++.+.+-..+.+ +..+-.++..+ ++.+|+..-.+.+-+...+|.. +++..|-+...
T Consensus 620 ie~~a~Lg~AliamGedig~eMv-----lRhf~h~mhyg-~~hiR~~~PLa~gils~SnPQm-------~vfDtL~r~sh 686 (881)
T COG5110 620 IESLALLGCALIAMGEDIGSEMV-----LRHFSHSMHYG-SSHIRSVLPLAYGILSPSNPQM-------NVFDTLERSSH 686 (881)
T ss_pred HHHHHHhhhHHhhhcchhhHHHH-----HHHhhhHhhcC-cHHHHHHHHHHHhcccCCCcch-------HHHHHHHHhcc
Confidence 33344444455555555444433 44566667777 8889988888888777666542 46778888888
Q ss_pred cCchhHHHHHHHHHHHhhcCCCHH
Q 009636 381 NAEFDIKKEAAWAISNATSGGTHE 404 (530)
Q Consensus 381 ~~~~~v~~~a~~aL~nl~~~~~~~ 404 (530)
.++.++...++.+++-+-.+....
T Consensus 687 d~dl~v~~ntIfamGLiGAGT~Na 710 (881)
T COG5110 687 DGDLNVIINTIFAMGLIGAGTLNA 710 (881)
T ss_pred ccchhHHHHHHHHhhccccCcchH
Confidence 889999999999988776654433
No 344
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.05 E-value=2e+02 Score=30.44 Aligned_cols=300 Identities=13% Similarity=0.099 Sum_probs=144.4
Q ss_pred CHHHHHHhhc-CCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009636 74 NLPVMVAGVW-SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (530)
Q Consensus 74 ~l~~l~~~l~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (530)
.++.+.+.|. +.|+..+..|=.+|+.+... .+ .+....-++..++.|--+..|..+|..+.++.. ..
T Consensus 6 qLe~lCk~LY~s~D~~~R~~AE~~L~e~s~s--pe---------clskCqlll~~gs~pYs~mlAst~L~Klvs~~t-~l 73 (1082)
T KOG1410|consen 6 QLESLCKDLYESTDPTARHRAEKALAELSES--PE---------CLSKCQLLLERGSYPYSQMLASTCLMKLVSRKT-PL 73 (1082)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHccC--HH---------HHHHHHHHHHcCCCchHHHHHHHHHHHHHcCCC-CC
Confidence 4566666665 67899999999999987432 22 233344455555557778888899999887543 11
Q ss_pred HHHHhCCChHHHHHhhCCCCH----HHHHHHHHHHHhhhCCCc--hhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHh
Q 009636 153 KVVIDHGAVPIFVKLLYSPSD----DVREQAVWALGNIAGDSP--RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTL 226 (530)
Q Consensus 153 ~~~~~~g~i~~L~~ll~~~~~----~i~~~a~~~L~nl~~~~~--~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L 226 (530)
.......+-.+++.++....| -+...-+..++.|..-.. ..++...=.+.+..+.+.+ ...+.+-..-++..|
T Consensus 74 pl~qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl-~~~~ve~~~igv~iL 152 (1082)
T KOG1410|consen 74 PLEQRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFL-QMDNVEHCIIGVQIL 152 (1082)
T ss_pred cHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHh-ccCchHHHHHHHHHH
Confidence 111122344567777765333 344445555666653221 1111122233566677777 444555555566666
Q ss_pred hhhccCCCCCChhhhhchHHHHHHhhcCC-ChhHHHHHHHHHHHhccCC-hHHHHHHHHhCcHHHHHHhhCCCCchhHHH
Q 009636 227 SNFCRGKPQPPFDQVSPALPALAHLIHSN-DDEVLTDACWALSYLSDGT-NDKIQAVIEAGVFPRLAEFLMHPSPSVLIP 304 (530)
Q Consensus 227 ~~L~~~~~~~~~~~~~~~l~~L~~ll~~~-d~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~ 304 (530)
..|...-.......-..-=..+..-++.+ =-++..-++..+.....-+ .+..+ .|++..++++--. ..
T Consensus 153 sqLvqemN~~~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q----~~L~~~vL~L~l~------Cl 222 (1082)
T KOG1410|consen 153 SQLVQEMNQADGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQ----LGLLMQVLKLNLN------CL 222 (1082)
T ss_pred HHHHHHhhCCCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhH----hhHHHHHHHHHhh------hc
Confidence 66654421110000000000001111111 1233334444444433111 01111 1222222221100 00
Q ss_pred HHHHHhHhhc----------CCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc------CCHHHHHHHHH
Q 009636 305 ALRTVGNIVT----------GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA------GNREQIQAVIE 368 (530)
Q Consensus 305 al~~L~nl~~----------~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~------~~~~~~~~l~~ 368 (530)
....+|.... -....+..+.+...+..+..+..+- .+...+.|..+|..+++ .+++...++.
T Consensus 223 ~FDfiGss~DEssed~ctVQIPTsWRs~f~d~stlqlfFdly~sl-p~~~S~~alsclvqlASvRRsLFN~aeRa~yl~- 300 (1082)
T KOG1410|consen 223 NFDFIGSSTDESSEDLCTVQIPTSWRSSFLDSSTLQLFFDLYHSL-PPELSELALSCLVQLASVRRSLFNGAERAKYLQ- 300 (1082)
T ss_pred cccccccccccccccccceecCcHHHHHhcCchHHHHHHHHhccC-CchhhHHHHHHHHHHHHHHHHHhCCHHHHHHHH-
Confidence 0000111110 0112344556778888999999887 88888999999999886 2222222221
Q ss_pred hCcHHHHHHHHhcC----chhHHHHHHHHHHHhhc
Q 009636 369 ANIIGPLVALLENA----EFDIKKEAAWAISNATS 399 (530)
Q Consensus 369 ~~~i~~L~~ll~~~----~~~v~~~a~~aL~nl~~ 399 (530)
.++.-..+++..+ |+.--.+-|..|+.+-.
T Consensus 301 -~Lv~Gvk~il~np~~LsD~~nyHeFCRllaRlkt 334 (1082)
T KOG1410|consen 301 -HLVEGVKRILENPQGLSDPANYHEFCRLLARLKT 334 (1082)
T ss_pred -HHHHHHHHHHhCCcCCCCcchHHHHHHHHHHHHh
Confidence 2444444555543 45555555666655543
No 345
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=63.78 E-value=1.6e+02 Score=31.68 Aligned_cols=70 Identities=17% Similarity=0.257 Sum_probs=55.3
Q ss_pred HHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC
Q 009636 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG 358 (530)
Q Consensus 287 l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~ 358 (530)
+..|-..+. .+..|..++..|+.++...+...-.+.+..+++.|+++|..+.+..+...|+.+|..+.=.
T Consensus 72 ~~~l~~~~~--~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ 141 (668)
T PF04388_consen 72 FDKLNDYFV--KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPH 141 (668)
T ss_pred HHHHHHHHc--CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcc
Confidence 344444444 3467899999999999999988888999999999999998876777777888888777543
No 346
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=63.13 E-value=88 Score=34.24 Aligned_cols=65 Identities=22% Similarity=0.245 Sum_probs=51.4
Q ss_pred HHHHHHHHHhCcHHHHHHHHhcC-chhHHHHHHHHHHHhhcC-----CCHHHHHHHHHcCChHHHHh-ccCC
Q 009636 360 REQIQAVIEANIIGPLVALLENA-EFDIKKEAAWAISNATSG-----GTHEQIKFLVIQGCIKPLCD-LLVC 424 (530)
Q Consensus 360 ~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~~-----~~~~~~~~l~~~~~i~~L~~-lL~~ 424 (530)
...++.+-+..+++.+++++... ++.++..|...|+.++.. +.....++|.....+..|+. +|+.
T Consensus 180 ~~Viq~l~d~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~ml~~ 251 (838)
T KOG2073|consen 180 TDVIQWLNDQELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIMLED 251 (838)
T ss_pred HHHHHHHhhHHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHHccC
Confidence 45566666788999999999765 689999999999999987 66677888887777777655 5553
No 347
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=63.12 E-value=20 Score=34.56 Aligned_cols=78 Identities=17% Similarity=0.273 Sum_probs=63.3
Q ss_pred CChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhc-CCCHHHHHHHHHHHH
Q 009636 413 GCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQT-HDNAEIYEKSVKLLE 491 (530)
Q Consensus 413 ~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~-~~~~~v~~~a~~il~ 491 (530)
.+++.|.+-|...|+.|+..++..+..+...+.+. |+..+....+...|..|.. +..+.|.++...++.
T Consensus 45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~----------~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~ 114 (462)
T KOG2199|consen 45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKR----------FRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVK 114 (462)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchH----------HHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 36888888999999999999999999888776442 6777777778888888876 889999999999999
Q ss_pred HhCCCCCCC
Q 009636 492 TYWLDDEDE 500 (530)
Q Consensus 492 ~~~~~~~~~ 500 (530)
+|-++...|
T Consensus 115 eWsee~K~D 123 (462)
T KOG2199|consen 115 EWSEEFKKD 123 (462)
T ss_pred HHHHHhccC
Confidence 987744443
No 348
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.04 E-value=2.6e+02 Score=31.44 Aligned_cols=231 Identities=18% Similarity=0.164 Sum_probs=121.2
Q ss_pred hcCCHHHHHH-hhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC--
Q 009636 71 KLENLPVMVA-GVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASG-- 147 (530)
Q Consensus 71 ~~~~l~~l~~-~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~-- 147 (530)
+++++.-+-. +|++++.+.+...+..+.++.+.. ..+-...-+.--+|.++.-+..-. ..+|...+.+|-.-..-
T Consensus 464 dLeAvqmLqdiFLkaenkdlqaeVlnrmfkIftsh-peNYricqelytvpllvlnmegfP-sslqvkiLkilEyAVtvvn 541 (2799)
T KOG1788|consen 464 DLEAVQMLQDIFLKAENKDLQAEVLNRMFKIFTSH-PENYRICQELYTVPLLVLNMEGFP-SSLQVKILKILEYAVTVVN 541 (2799)
T ss_pred chHHHHHHHHHHHHhcCcchhhHHHHHHHHHhccC-hHHhhHHhhccccchhhhhhcCCC-hHHHHHHHHHHHHHHhhhc
Confidence 4444444443 466788888888888888887653 222222234566888887776555 56776666555432220
Q ss_pred ChhhHHHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCC-----CchhHHHH
Q 009636 148 TSEHTKVVIDHGAVPIFVKLLYSP-SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQ-----PKLSMLRN 221 (530)
Q Consensus 148 ~~~~~~~~~~~g~i~~L~~ll~~~-~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~-----~~~~~~~~ 221 (530)
.-..+. +-.|+-+|+.+ ...+....+.....+...+..+++.+.+-|++..|...++.+ +|.- .
T Consensus 542 cvPeqE-------LlSLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpdqy---s 611 (2799)
T KOG1788|consen 542 CVPEQE-------LLSLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPDQY---S 611 (2799)
T ss_pred cCcHHH-------HHHHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcchh---h
Confidence 111111 22466667653 345556666666677777777888888889888887777431 1110 0
Q ss_pred HHHHhhhhccCCC-CCChhh---hhchHHHHHHhhcCC---Chh--H---HHHHHHHHHHhccCChHHHHHHHHhCcHHH
Q 009636 222 ATWTLSNFCRGKP-QPPFDQ---VSPALPALAHLIHSN---DDE--V---LTDACWALSYLSDGTNDKIQAVIEAGVFPR 289 (530)
Q Consensus 222 a~~~L~~L~~~~~-~~~~~~---~~~~l~~L~~ll~~~---d~~--v---~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ 289 (530)
.++.....++ ...+.. ....+-.--+++++. ++- + ..-.-.++..+..+..++...+.+..++..
T Consensus 612 ---gvsehydrnpss~sf~~~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvkl 688 (2799)
T KOG1788|consen 612 ---GVSEHYDRNPSSPSFKQHLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKL 688 (2799)
T ss_pred ---hHHHHhhcCCCCchhhhccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceE
Confidence 0111111111 111000 001110111122221 110 0 001123455566666666676777777777
Q ss_pred HHHhhCCCCchhHHHHHHHHhHhhcCCch
Q 009636 290 LAEFLMHPSPSVLIPALRTVGNIVTGDDM 318 (530)
Q Consensus 290 L~~lL~~~~~~~~~~al~~L~nl~~~~~~ 318 (530)
+++++-++ ..+...++++..+....+.
T Consensus 689 ilpflind--ehRSslLrivscLitvdpk 715 (2799)
T KOG1788|consen 689 ILPFLIND--EHRSSLLRIVSCLITVDPK 715 (2799)
T ss_pred EEEeeech--HHHHHHHHHHHHHhccCcc
Confidence 77777433 4567777777777766654
No 349
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=63.01 E-value=62 Score=27.61 Aligned_cols=108 Identities=13% Similarity=0.114 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHhhcCCC-----CC---cHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHH-hC
Q 009636 88 GVQYECTTQFRKLLSIER-----SP---PIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVI-DH 158 (530)
Q Consensus 88 ~~~~~a~~~l~~l~~~~~-----~~---~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~-~~ 158 (530)
..+..+++.+..++...+ .+ ....+++..+.+.+.+.+.+.+ +.+-..+++++..+... .+..+. +.
T Consensus 37 ~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~-~~i~~~slri~~~l~~~---~~~~Lk~el 112 (168)
T PF12783_consen 37 RSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSD-FPIFSRSLRIFLTLLSR---FRSHLKLEL 112 (168)
T ss_pred HHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 445556666666554421 22 4556677788999999888877 88999999999998862 232222 11
Q ss_pred C-ChHHHHH-hhCCCC--HHHHHHHHHHHHhhhCCCchhhhhHhh
Q 009636 159 G-AVPIFVK-LLYSPS--DDVREQAVWALGNIAGDSPRCRDLVLS 199 (530)
Q Consensus 159 g-~i~~L~~-ll~~~~--~~i~~~a~~~L~nl~~~~~~~~~~i~~ 199 (530)
+ +++.++. ++.+++ ..-+..++.++..++.+..-..+....
T Consensus 113 e~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~p~~l~~lf~N 157 (168)
T PF12783_consen 113 EVFLSHIILRILESDNSSLWQKELALEILRELCKDPQFLVDLFVN 157 (168)
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhChhHHHHHHHH
Confidence 2 3445555 565533 467888999999999877655555443
No 350
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=62.99 E-value=13 Score=27.75 Aligned_cols=70 Identities=10% Similarity=0.081 Sum_probs=44.1
Q ss_pred hhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHH
Q 009636 198 LSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWAL 267 (530)
Q Consensus 198 ~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l 267 (530)
.+..++.|+..++....+.++++..+.|+.++.......-..-...++..+......+++.+...|..++
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~ 83 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIV 83 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 4455788888887677789999999999999887653221222233334444444455666666655544
No 351
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=62.68 E-value=49 Score=27.35 Aligned_cols=74 Identities=12% Similarity=0.056 Sum_probs=56.8
Q ss_pred cHHHHHHHHhc-CchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHH-HHhccCC---CChHHHHHHHHHHHHHHHhh
Q 009636 371 IIGPLVALLEN-AEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKP-LCDLLVC---PDPRIVTVCLEGLENILKVG 444 (530)
Q Consensus 371 ~i~~L~~ll~~-~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~-L~~lL~~---~~~~~~~~al~~l~~ll~~~ 444 (530)
++..|.+-+.. .++.++..|+..|-.++.++.......+....++.. |+.++.. .+..+...++..+.......
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f 117 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAF 117 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHh
Confidence 45556666654 588999999999999999988888888888899997 8998863 23478888887777665443
No 352
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.37 E-value=36 Score=34.44 Aligned_cols=100 Identities=17% Similarity=0.236 Sum_probs=69.6
Q ss_pred HhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhh
Q 009636 379 LENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVF 458 (530)
Q Consensus 379 l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~ 458 (530)
+...|+.+-.+.|..|..--. +.+ .++..|-+-+...++.++..||..|..+++.+... |
T Consensus 14 l~~pDWa~NleIcD~IN~~~~-~~~---------eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~----------f 73 (470)
T KOG1087|consen 14 LAEPDWALNLEICDLINSTEG-GPK---------EAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYS----------F 73 (470)
T ss_pred ccCccHHHHHHHHHHHhcCcc-CcH---------HHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHH----------H
Confidence 344566666666655533322 222 24667777788888899999999999888776442 6
Q ss_pred HHHhhhhccHHHHHHH-hcC-CCHHHHHHHHHHHHHhCCCCC
Q 009636 459 TQMIDDAEGLEKIESL-QTH-DNAEIYEKSVKLLETYWLDDE 498 (530)
Q Consensus 459 ~~~l~~~~~~~~l~~l-~~~-~~~~v~~~a~~il~~~~~~~~ 498 (530)
...+.+.++++.+..+ .++ .+..|++++..+|+.|.....
T Consensus 74 h~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~ 115 (470)
T KOG1087|consen 74 HLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQQAFC 115 (470)
T ss_pred HHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHHHcc
Confidence 6677777777776555 466 788999999999999855333
No 353
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=62.00 E-value=45 Score=37.58 Aligned_cols=232 Identities=17% Similarity=0.184 Sum_probs=112.3
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHH-HHhCCChHHHHH---------hhCC-CCHHHHHHHHHHHH
Q 009636 116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV-VIDHGAVPIFVK---------LLYS-PSDDVREQAVWALG 184 (530)
Q Consensus 116 g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~-~~~~g~i~~L~~---------ll~~-~~~~i~~~a~~~L~ 184 (530)
+++..|+..+-++. -++|.-++.++..+...+...... ..+. .+-.++. +... --..+++.|+|+|+
T Consensus 77 s~~e~L~~~~~~~~-we~rhg~~i~lrei~~~h~~~~~~~~led-~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~ 154 (1549)
T KOG0392|consen 77 SFLEELVNDLFEPQ-WEIRHGAAIALREILKTHGDSLSYELLED-LLIRLLCVLALDRFGDFISDNVVAPVREACAQALG 154 (1549)
T ss_pred HHHHHHHHHhcCch-hhhhcCcchhhhhHHHHhcchhhHHHHHH-HHHHHHHHHHHHHhcccccccchhhhHHHHHHHHH
Confidence 34666776666666 577777777777766533221111 1111 1111111 1111 12368899999999
Q ss_pred hhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHH
Q 009636 185 NIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDAC 264 (530)
Q Consensus 185 nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~ 264 (530)
.+..+-..- .+ ...+..+..++ ..+.-+++...+..+.+...............+++....-+.+.+.+++..+.
T Consensus 155 ~~l~~~~~s--~~--~~~~~il~q~~-~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds~ddv~~~aa 229 (1549)
T KOG0392|consen 155 AYLKHMDES--LI--KETLDILLQML-RQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDSDDDVRSVAA 229 (1549)
T ss_pred HHHHhhhhH--hh--HHHHHHHHHHH-cCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHH
Confidence 886543321 11 11345555555 33333333333322222211111111123345566667777788888888887
Q ss_pred HHHHHhccCChH-HHHHHHHhCcHHHHHHhhCCCCc-h-hHHHHHHHHhHhhcCCch---hhHHHhhcCchHHHHHhhcC
Q 009636 265 WALSYLSDGTND-KIQAVIEAGVFPRLAEFLMHPSP-S-VLIPALRTVGNIVTGDDM---QTQCVIEYQALPCLLNLLSG 338 (530)
Q Consensus 265 ~~l~~l~~~~~~-~~~~~~~~~~l~~L~~lL~~~~~-~-~~~~al~~L~nl~~~~~~---~~~~~~~~~~l~~L~~lL~~ 338 (530)
..+.-+...... ..+.+. .++..+..++..-+. . -....-..+..++...+. ..+.-.+.|++|.+...+.+
T Consensus 230 ~~l~~~~s~~v~l~~~~i~--~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~ 307 (1549)
T KOG0392|consen 230 QFLVPAPSIQVKLMVQKIA--KLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLRH 307 (1549)
T ss_pred HHhhhhhHHHHhhhHhHHH--HHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHHH
Confidence 777665543211 111111 122233333222111 0 001111112222222210 01111235899999999998
Q ss_pred CCchhHHHHHHHHHHHHhc
Q 009636 339 NYKKSIKKEACWTVSNITA 357 (530)
Q Consensus 339 ~~~~~v~~~a~~~L~nl~~ 357 (530)
. -..++..++.++..+..
T Consensus 308 ~-i~sv~~a~l~~l~~lle 325 (1549)
T KOG0392|consen 308 T-ISSVRRAALETLAMLLE 325 (1549)
T ss_pred H-HHHHHHHHHHHHHHHHh
Confidence 8 78888999988888876
No 354
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.95 E-value=2.2e+02 Score=30.18 Aligned_cols=311 Identities=14% Similarity=0.098 Sum_probs=140.7
Q ss_pred HHHHHhh-CCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhh
Q 009636 162 PIFVKLL-YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240 (530)
Q Consensus 162 ~~L~~ll-~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~ 240 (530)
..+++-| .+.++.-+..|-.+|..++. +|++- ....-++.....+--.--|..+|..+.......+...
T Consensus 8 e~lCk~LY~s~D~~~R~~AE~~L~e~s~-specl---------skCqlll~~gs~pYs~mlAst~L~Klvs~~t~lpl~q 77 (1082)
T KOG1410|consen 8 ESLCKDLYESTDPTARHRAEKALAELSE-SPECL---------SKCQLLLERGSYPYSQMLASTCLMKLVSRKTPLPLEQ 77 (1082)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHcc-CHHHH---------HHHHHHHHcCCCchHHHHHHHHHHHHHcCCCCCcHHH
Confidence 3444444 33667777777777777653 33332 2222222233333333444555555555443333333
Q ss_pred hhchHHHHHHhhcCCC----hhHHHHHHHHHHHhccC---ChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhh
Q 009636 241 VSPALPALAHLIHSND----DEVLTDACWALSYLSDG---TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIV 313 (530)
Q Consensus 241 ~~~~l~~L~~ll~~~d----~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~ 313 (530)
.-.+-..++..+.+.. +-+....+..++.++.. +....+... .+.+..+.++++.++.+...-++.+|..++
T Consensus 78 rldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~F-Rd~v~~~~kfl~~~~ve~~~igv~iLsqLv 156 (1082)
T KOG1410|consen 78 RLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVF-RDPVDDVTKFLQMDNVEHCIIGVQILSQLV 156 (1082)
T ss_pred HHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchh-hhhHHHHHHHhccCchHHHHHHHHHHHHHH
Confidence 3334444555555432 23444444455555421 111112122 266777888888877666666777777665
Q ss_pred cCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCC-HHHHHHHHHhCcHHHHHHHH-hcCchh----HH
Q 009636 314 TGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN-REQIQAVIEANIIGPLVALL-ENAEFD----IK 387 (530)
Q Consensus 314 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~~i~~L~~ll-~~~~~~----v~ 387 (530)
..-.. ........--..+..-+.+..-.++-.-||..|......+ .+. .+.|++..++++- +.-+.+ .-
T Consensus 157 qemN~-~~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~----~q~~L~~~vL~L~l~Cl~FDfiGss~ 231 (1082)
T KOG1410|consen 157 QEMNQ-ADGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDR----AQLGLLMQVLKLNLNCLNFDFIGSST 231 (1082)
T ss_pred HHhhC-CCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccH----hHhhHHHHHHHHHhhhcccccccccc
Confidence 31100 0000000001111111221111233334444444333110 000 0112222222211 000000 00
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhcc
Q 009636 388 KEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEG 467 (530)
Q Consensus 388 ~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~ 467 (530)
-+...-+++.-. ....+..+.+...+..+.++..+-.+.....++.+|..+...-...-+. ..-..|...+. .|.
T Consensus 232 DEssed~ctVQI--PTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLFN~--aeRa~yl~~Lv-~Gv 306 (1082)
T KOG1410|consen 232 DESSEDLCTVQI--PTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLFNG--AERAKYLQHLV-EGV 306 (1082)
T ss_pred ccccccccceec--CcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHHH-HHH
Confidence 011111111111 2234555666677888899999888888888999988887654332210 01112333333 455
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009636 468 LEKIESLQTHDNAEIYEKSVKLLETY 493 (530)
Q Consensus 468 ~~~l~~l~~~~~~~v~~~a~~il~~~ 493 (530)
.+.|++=+.-.++.-|+.-..++.++
T Consensus 307 k~il~np~~LsD~~nyHeFCRllaRl 332 (1082)
T KOG1410|consen 307 KRILENPQGLSDPANYHEFCRLLARL 332 (1082)
T ss_pred HHHHhCCcCCCCcchHHHHHHHHHHH
Confidence 55555556667777777777777765
No 355
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=61.67 E-value=1.6e+02 Score=29.90 Aligned_cols=304 Identities=15% Similarity=0.147 Sum_probs=135.4
Q ss_pred HHHHHHHHHHHHhhhCCCchhhhhHhhcCChH-HHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhh-hhchHHHHHH
Q 009636 173 DDVREQAVWALGNIAGDSPRCRDLVLSQGGLV-PLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ-VSPALPALAH 250 (530)
Q Consensus 173 ~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~-~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~-~~~~l~~L~~ 250 (530)
...|..|+.+||.++..-+...-. .... .|+..| .+....-+..++.++...+.......... ...+.+.|..
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~----~~~~~~L~~~L-~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~ 175 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQ----EIFQPLLLPYL-NSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLE 175 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHH----HHHHHHHHHHh-cchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHH
Confidence 345778889999988654321111 1233 467777 66666666667777777766542211111 3455666777
Q ss_pred hhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHH-----HHHHhhCC---CCch--hHHHHHHHHhHh----hcC-
Q 009636 251 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFP-----RLAEFLMH---PSPS--VLIPALRTVGNI----VTG- 315 (530)
Q Consensus 251 ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~-----~L~~lL~~---~~~~--~~~~al~~L~nl----~~~- 315 (530)
.|..+.+..=.+....+..+-.........+.+.|.++ .|-...+. ..+. ....|-...+.. ...
T Consensus 176 ~L~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~~~~~klp~l~~~v~~~~~~~p~~fsi~~A~~v~~~~~~~l~~~l 255 (441)
T PF12054_consen 176 ILENPEPPYYDELVPSLKRLRTECQQLLATFRDVGKVPPSKLPSLPVVVQGEPEAGPEAFSIEQAEKVVGEDFEKLKKSL 255 (441)
T ss_pred HHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhccccccccccccccCCccCCHHHHHHHHHHHHHHHHHhc
Confidence 77744333333333444444444444555566666622 11111111 1111 111222222111 110
Q ss_pred --Cchh-hHHHhhc--CchHHHHHhhcCC---CchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC-chhH
Q 009636 316 --DDMQ-TQCVIEY--QALPCLLNLLSGN---YKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA-EFDI 386 (530)
Q Consensus 316 --~~~~-~~~~~~~--~~l~~L~~lL~~~---~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v 386 (530)
.... ....++. .-+...+...+.. .+..|+..++.++..+-.- |+.. +.+|..|++-++.+ +..+
T Consensus 256 ~~~~k~~a~~~Le~~r~~l~~ai~~~~~~~~~~~~~V~Aa~A~A~v~l~~l-P~KL-----nPiIrpLMdSIK~Een~~L 329 (441)
T PF12054_consen 256 SPSQKLSALQALEDRRQRLQAAIEEAKEVQTSRDVRVLAAAASALVALGGL-PKKL-----NPIIRPLMDSIKREENELL 329 (441)
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCCc-----cHHHHHHHHHhhccccHHH
Confidence 1000 0001100 0011111111100 0233444444444444221 2211 24677888888766 7899
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCC---CChHHH--HHHHHHHHHHHHhhhhhhhcC--CCCchhhH
Q 009636 387 KKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC---PDPRIV--TVCLEGLENILKVGEAEKNLG--NTDVNVFT 459 (530)
Q Consensus 387 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~---~~~~~~--~~al~~l~~ll~~~~~~~~~~--~~~~~~~~ 459 (530)
|..++.+|..|+.... ..+.=-...+++-|+.++.. .-|.+- ...-+.+..+.+......... ......-.
T Consensus 330 Q~rsA~slA~Li~~~~--~rkp~PndKIvkNLc~flC~D~seTP~~~~~~~~~~gILsl~k~~~~~~~~~~~~~~~~~~~ 407 (441)
T PF12054_consen 330 QQRSAESLARLIQLCV--DRKPCPNDKIVKNLCTFLCVDTSETPEFSHNVDKKDGILSLRKEEDKADHADAASEEREQKE 407 (441)
T ss_pred HHHHHHHHHHHHHHHh--CCCCCCcHHHHHHHhhhhccCcccCCCCCCCcchhhcccchhhhcccccccccccchhhhhh
Confidence 9999999998876331 00000112346666776632 222221 111112222222111100000 00122223
Q ss_pred HHhhhhccHHHHHHHhcCCCHHHHHHHHHH
Q 009636 460 QMIDDAEGLEKIESLQTHDNAEIYEKSVKL 489 (530)
Q Consensus 460 ~~l~~~~~~~~l~~l~~~~~~~v~~~a~~i 489 (530)
-.+..-|+...|..|..+..+++.++.-.+
T Consensus 408 a~I~RrGA~~aL~~l~~~FG~~Lf~~lP~L 437 (441)
T PF12054_consen 408 ARIQRRGAELALEQLAKRFGSSLFEKLPKL 437 (441)
T ss_pred hHHHhcCHHHHHHHHHHHHhHHHHHhhhHH
Confidence 457778888888888777777766655443
No 356
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=60.63 E-value=1.4e+02 Score=30.61 Aligned_cols=74 Identities=19% Similarity=0.243 Sum_probs=56.6
Q ss_pred HHHHHHHHHcCChHHHHhccC-CCChHHHHHHHHHHHHHHHhhhhhhhc--CCCCchhhHHHhhhhccHHHHHHHhc
Q 009636 403 HEQIKFLVIQGCIKPLCDLLV-CPDPRIVTVCLEGLENILKVGEAEKNL--GNTDVNVFTQMIDDAEGLEKIESLQT 476 (530)
Q Consensus 403 ~~~~~~l~~~~~i~~L~~lL~-~~~~~~~~~al~~l~~ll~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~l~~l~~ 476 (530)
.....+|.+.++++.|+++|+ ..++.++..|.+.|+.++......... ...+.+++...+.....+++|...+-
T Consensus 52 ~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL 128 (475)
T PF04499_consen 52 TGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIML 128 (475)
T ss_pred HHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHh
Confidence 456777888999999999997 456779999999999998877543321 11246889999999999998876543
No 357
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.16 E-value=84 Score=30.77 Aligned_cols=115 Identities=14% Similarity=0.127 Sum_probs=80.1
Q ss_pred chHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHH
Q 009636 328 ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIK 407 (530)
Q Consensus 328 ~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~ 407 (530)
-+.-|+..+.+. +..+|..|...|-.+....+.....- ...+++.+..++.+.+..+|.....++-.++....++...
T Consensus 59 tlkeLl~qlkHh-NakvRkdal~glkd~l~s~p~~l~~~-~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~s 136 (393)
T KOG2149|consen 59 TLKELLSQLKHH-NAKVRKDALNGLKDLLKSHPAELQSH-LYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQS 136 (393)
T ss_pred cHHHHHhhhcCc-hHhhhHHHHHHHHHHHHhChHHHHHH-HHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhc
Confidence 356688888888 99999999999888776544433321 2347778888888888999999999999887765444422
Q ss_pred HHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhh
Q 009636 408 FLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGE 445 (530)
Q Consensus 408 ~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~ 445 (530)
.++ .=++..+...+..-.+.++..++..+..++...+
T Consensus 137 p~~-~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~ 173 (393)
T KOG2149|consen 137 PMV-SLLMPYISSAMTHITPEIQEDSLKFLSLLLERYP 173 (393)
T ss_pred chH-HHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcC
Confidence 211 1123344445566778888888888888877653
No 358
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=59.72 E-value=12 Score=29.09 Aligned_cols=42 Identities=26% Similarity=0.320 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHH
Q 009636 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVRE 177 (530)
Q Consensus 135 ~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~ 177 (530)
...+..+..++. .|+.-..+++.|+++.|+.+|.+.+.++..
T Consensus 64 d~~Ik~l~~La~-~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 64 DEEIKKLSVLAT-APELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHccC-ChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 455667777777 688888999999999999999998876643
No 359
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.36 E-value=2.2e+02 Score=31.00 Aligned_cols=251 Identities=14% Similarity=0.111 Sum_probs=142.8
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 009636 76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV 155 (530)
Q Consensus 76 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~ 155 (530)
..+=+.++++....|-++...+-++.... |.- .++++ ..-.|.+....++ -.++...+++... +......+
T Consensus 27 ~~ldkGlr~~~t~eqpeavvr~~RLFek~--Pfp-ifiNs-~llrLaDaF~~Gn-~llRf~V~rv~~q----~g~hln~v 97 (970)
T KOG1988|consen 27 MELDKGLRSGKTSEQPEAVVRFPRLFEKY--PFP-IFINS-QLLRLADAFPVGN-NLLRFAVLRVDQQ----SGKHLNKV 97 (970)
T ss_pred HHHhhcccccccccchHHHHHHHHHHhhC--Cch-hhhhH-HHHHHHHHhccCc-HHHHHHHHHHHhh----ccccchhh
Confidence 44445778777777778887777776542 221 33333 3445677777777 6888877777763 12222222
Q ss_pred H-hCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCC
Q 009636 156 I-DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP 234 (530)
Q Consensus 156 ~-~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~ 234 (530)
. ...++..+.....+.|+.-+..++.+++.++.--| +....+.++..-.++.+.--.+.++.+..+++....
T Consensus 98 ~n~aE~lrri~~V~hsnDp~aRAllL~ilg~~s~lip-------Efn~~hhlIr~sl~S~helE~eaa~~Aaa~Faa~sk 170 (970)
T KOG1988|consen 98 LNGAEFLRRIFYVDHSNDPVARALLLRILGQLSALIP-------EFNQVHHLIRISLDSHHELEVEAAEFAAACFAAQSK 170 (970)
T ss_pred hhhhhhhheeEEeecCCCHHHHHHHHHHHHHhhhhcc-------cccchhHHHHHHhcCccchhhHHHHHHHhhhhhhhh
Confidence 2 22344445555566889899999999988764444 334455566554355555556777777777765532
Q ss_pred CCChhhhhchHHHHHHhhcCCC--hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC-CCchhHHHHHHHHhH
Q 009636 235 QPPFDQVSPALPALAHLIHSND--DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH-PSPSVLIPALRTVGN 311 (530)
Q Consensus 235 ~~~~~~~~~~l~~L~~ll~~~d--~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~~~~~al~~L~n 311 (530)
.. ...+...+..++...+ ....-..+.++..+...... ...+....+.++.. +..+-...-+.++.+
T Consensus 171 ~F----A~si~gkis~mIef~d~~~~mkL~li~Vfs~M~c~at~------A~ra~~l~m~lv~~tps~d~~v~fL~stT~ 240 (970)
T KOG1988|consen 171 DF----ACSICGKISDMIEFLDLPVPMKLSLIPVFSHMHCHATG------ASRAFGLCMSLVSGTPSIDRVVAFLYSTTN 240 (970)
T ss_pred hh----HHHHHHHHHHHhhcccCCCCcchhHhHHHHHhcchhhh------hHHHHHHHHHHhcCCCcccceeeehhhhHH
Confidence 21 1223333344444332 33444556666666543221 11233444555433 344445556677777
Q ss_pred hhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009636 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (530)
Q Consensus 312 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 357 (530)
++...- ..-.+-+..+.++++.+....++..+.|.+.+++.
T Consensus 241 Lasrs~-----~ai~eq~d~l~q~~ked~~kivr~~vl~kl~~La~ 281 (970)
T KOG1988|consen 241 LASRSL-----VAISEQSDVLLQFLKEDERKIVRLKVLRKLDFLAK 281 (970)
T ss_pred HHHHHH-----HHhHHHHHHHHHhhcCCchhHHHHHHHHHHHHHhh
Confidence 765322 11235567788888755466677778888887764
No 360
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=59.31 E-value=2.4e+02 Score=29.79 Aligned_cols=160 Identities=18% Similarity=0.163 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHH---hCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHH
Q 009636 131 PQLQFEAAWALTNIASGTSEHTKVVI---DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLL 207 (530)
Q Consensus 131 ~~i~~~a~~~L~~l~~~~~~~~~~~~---~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll 207 (530)
++++.-|+-+|.-++...+..-..+. .+.++..++..+. .++..+-.++++|.|+..+ +..++.+... ...++
T Consensus 558 ~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~--~~~i~ 633 (745)
T KOG0301|consen 558 VEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMSR--LESIL 633 (745)
T ss_pred HHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHHH--HHHHh
Confidence 67888888888877774433322222 2334555555554 4567788899999999877 4456665543 22232
Q ss_pred Hhhc---CCCchhHHHHHHHHhhhhcc--CCCCCChhhhhchHHHHHHhhcC-CChhHHHHHHHHHHHhccCChHHHHHH
Q 009636 208 AQLN---GQPKLSMLRNATWTLSNFCR--GKPQPPFDQVSPALPALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAV 281 (530)
Q Consensus 208 ~ll~---~~~~~~~~~~a~~~L~~L~~--~~~~~~~~~~~~~l~~L~~ll~~-~d~~v~~~a~~~l~~l~~~~~~~~~~~ 281 (530)
..+. ...+..++........|++- ............+...+..+++. .|-+.....+.++++++..+....+ +
T Consensus 634 ~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~-~ 712 (745)
T KOG0301|consen 634 DPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQ-L 712 (745)
T ss_pred hhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHHH-H
Confidence 2221 22233343333322223221 11122211122222223333332 2344566678888888877655444 3
Q ss_pred HHhCcHHHHHHhhC
Q 009636 282 IEAGVFPRLAEFLM 295 (530)
Q Consensus 282 ~~~~~l~~L~~lL~ 295 (530)
...--+..++.-++
T Consensus 713 A~~~~v~sia~~~~ 726 (745)
T KOG0301|consen 713 AKNRSVDSIAKKLK 726 (745)
T ss_pred HHhcCHHHHHHHHH
Confidence 33233444554443
No 361
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=59.14 E-value=42 Score=32.43 Aligned_cols=61 Identities=21% Similarity=0.324 Sum_probs=43.1
Q ss_pred CcHHHHHHcC--CHHHHHHhhcCCC--CHHHHHHHHHHHHHHhcCChhhHHHHH------hCCChHHHHHh
Q 009636 107 PPIEEVIRSG--VVPRFVEFLLRED--YPQLQFEAAWALTNIASGTSEHTKVVI------DHGAVPIFVKL 167 (530)
Q Consensus 107 ~~~~~~~~~g--~v~~Lv~ll~~~~--~~~i~~~a~~~L~~l~~~~~~~~~~~~------~~g~i~~L~~l 167 (530)
.....+...+ ++..|++++..++ ...++..|+.+|..++.......+.+. .+|++..+++.
T Consensus 254 ~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HGiL~~llR~ 324 (329)
T PF06012_consen 254 QFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHGILPQLLRK 324 (329)
T ss_pred HHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCcccHHHHHHH
Confidence 3445566555 8999999998755 468999999999999996655554432 34666666654
No 362
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=58.17 E-value=86 Score=26.13 Aligned_cols=123 Identities=13% Similarity=0.094 Sum_probs=80.3
Q ss_pred ChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhC--CCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHH
Q 009636 148 TSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAG--DSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATW 224 (530)
Q Consensus 148 ~~~~~~~~~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~--~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~ 224 (530)
+++.-+.+.+..++..+++++.. ....++.+.+.+++-+.. .++..-..+.+.+.+..++..--+-.++++...-..
T Consensus 15 ~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYIs 94 (149)
T PF09758_consen 15 DPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYIS 94 (149)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHHH
Confidence 35566777788889999999977 566777777777776653 222234456677778777776545668889888888
Q ss_pred HhhhhccCCCCCCh--h--hhhchHH---HHHHhhcCCChhHHHHHHHHHHHh
Q 009636 225 TLSNFCRGKPQPPF--D--QVSPALP---ALAHLIHSNDDEVLTDACWALSYL 270 (530)
Q Consensus 225 ~L~~L~~~~~~~~~--~--~~~~~l~---~L~~ll~~~d~~v~~~a~~~l~~l 270 (530)
.|..|+..-..... . ...+-.| .-+++..++|.-++..+-..+.++
T Consensus 95 fLK~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni 147 (149)
T PF09758_consen 95 FLKTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNI 147 (149)
T ss_pred HHHHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhh
Confidence 88888765422221 1 1123344 445666788888777665555444
No 363
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=57.62 E-value=1.1e+02 Score=25.32 Aligned_cols=97 Identities=16% Similarity=0.216 Sum_probs=63.6
Q ss_pred cCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccC-CCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhH
Q 009636 381 NAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV-CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFT 459 (530)
Q Consensus 381 ~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~-~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~ 459 (530)
.+|..+-.+.+..+.. -..+. . .++..|..-|. ..++.++..++..|..+++.+.. .|.
T Consensus 16 ~~dw~~ileicD~In~-~~~~~-k--------~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~----------~fh 75 (141)
T cd03565 16 SEDWGLNMEICDIINE-TEDGP-K--------DAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGH----------RFH 75 (141)
T ss_pred CcCHHHHHHHHHHHhC-CCCcH-H--------HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccH----------HHH
Confidence 3456666666666532 22211 1 24555555555 46888998999999999887643 256
Q ss_pred HHhhhhccHHH-HHHHhc---CCCHHHHHHHHHHHHHhCCCC
Q 009636 460 QMIDDAEGLEK-IESLQT---HDNAEIYEKSVKLLETYWLDD 497 (530)
Q Consensus 460 ~~l~~~~~~~~-l~~l~~---~~~~~v~~~a~~il~~~~~~~ 497 (530)
..+...+.++. |..+.. ..+.+|+.++..+++.|-...
T Consensus 76 ~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f 117 (141)
T cd03565 76 VLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAF 117 (141)
T ss_pred HHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHh
Confidence 66666677776 776654 245699999999999986543
No 364
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=57.35 E-value=1.9e+02 Score=28.03 Aligned_cols=192 Identities=11% Similarity=0.035 Sum_probs=94.6
Q ss_pred ChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC-ChHHHHH
Q 009636 202 GLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG-TNDKIQA 280 (530)
Q Consensus 202 ~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~-~~~~~~~ 280 (530)
++..+..++.+..++......+.++..=+..- .......++..+.+-+....+.++..-+.+++.+... .......
T Consensus 23 i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~---~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~ 99 (339)
T PF12074_consen 23 IVQGLSPLLSKESNEAALSALLSALFKHLFFL---SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLK 99 (339)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh---CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHH
Confidence 56667777767777777777666665433221 1222356777888888888777888877777776640 0001111
Q ss_pred HHHhCcHHHHHHhhC----CCCchh----HHHHHHHHhHhhcCCchhhHH-------Hh-hc--C--chHHHHHhhcCCC
Q 009636 281 VIEAGVFPRLAEFLM----HPSPSV----LIPALRTVGNIVTGDDMQTQC-------VI-EY--Q--ALPCLLNLLSGNY 340 (530)
Q Consensus 281 ~~~~~~l~~L~~lL~----~~~~~~----~~~al~~L~nl~~~~~~~~~~-------~~-~~--~--~l~~L~~lL~~~~ 340 (530)
+.. .+++.|...++ ++.... ...+.-.+. +.......... +. +. . .-+.+..-+ .
T Consensus 100 ~~~-~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~-~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl--~- 174 (339)
T PF12074_consen 100 FAE-PFLPKLLQSLKEASANPLQSAQNGELVGAYVLLA-LSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKL--A- 174 (339)
T ss_pred HHH-HHHHHHHHHHHHHHhCCCCccccccHHHHHHHHH-hccccchhhhhhhhhhhhhccCCCcchhcCHHHHhcc--C-
Confidence 222 46666666663 332221 112222222 11111100000 00 00 0 001111111 1
Q ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC--chhHHHHHHHHHHHhhcCC
Q 009636 341 KKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATSGG 401 (530)
Q Consensus 341 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~nl~~~~ 401 (530)
+++-....+.++..+..+.......-....+-..++.++-+. .+.+|+.|..++..+....
T Consensus 175 ~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~ 237 (339)
T PF12074_consen 175 SEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASN 237 (339)
T ss_pred CHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhC
Confidence 222333344444444433222111111223566778887777 8999999999999998864
No 365
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=57.27 E-value=42 Score=27.62 Aligned_cols=142 Identities=18% Similarity=0.185 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHhcCC-hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHh
Q 009636 131 PQLQFEAAWALTNIASGT-SEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQ 209 (530)
Q Consensus 131 ~~i~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~l 209 (530)
+.++...+.++..++... ++.- ..+++.+++++.+ ++......+.+|..+..+-..++....
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P~~W-----p~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~----------- 64 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWPQQW-----PDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSL----------- 64 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTS-----TTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHS-----------
T ss_pred hhHHHHHHHHHHHHHHHHChhhC-----chHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhh-----------
Confidence 356667777777777632 1111 2456777777765 455566666666666432111000000
Q ss_pred hcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCC----hhHHHHHHHHHHHhccCChHHHHHHHHhC
Q 009636 210 LNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSND----DEVLTDACWALSYLSDGTNDKIQAVIEAG 285 (530)
Q Consensus 210 l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~ 285 (530)
...-+...-..+.. ....++..+...+.... .++...++.++......-+ ...+...+
T Consensus 65 -----~~~r~~~l~~~l~~-----------~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~--~~~i~~~~ 126 (148)
T PF08389_consen 65 -----SQERRRELKDALRS-----------NSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIP--IELIINSN 126 (148)
T ss_dssp -----HHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS---HHHHHSSS
T ss_pred -----hHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCC--HHHhccHH
Confidence 00001111111100 01333444444444322 6777888888887776443 34566677
Q ss_pred cHHHHHHhhCCCCchhHHHHHHHH
Q 009636 286 VFPRLAEFLMHPSPSVLIPALRTV 309 (530)
Q Consensus 286 ~l~~L~~lL~~~~~~~~~~al~~L 309 (530)
+++.+.++|.+++ .+..|+.+|
T Consensus 127 ~l~~~~~~l~~~~--~~~~A~~cl 148 (148)
T PF08389_consen 127 LLNLIFQLLQSPE--LREAAAECL 148 (148)
T ss_dssp HHHHHHHHTTSCC--CHHHHHHHH
T ss_pred HHHHHHHHcCCHH--HHHHHHHhC
Confidence 8888888884444 577777664
No 366
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=56.98 E-value=5.6e+02 Score=33.31 Aligned_cols=315 Identities=13% Similarity=0.072 Sum_probs=141.6
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC------h-hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhC
Q 009636 116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGT------S-EHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAG 188 (530)
Q Consensus 116 g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~------~-~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~ 188 (530)
-.++.|+..+...+ +.+...+..++..+.... + .....-+-.++++.+.++..++...-+...+-.|..+..
T Consensus 984 i~ldal~~~l~~~~-~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~ 1062 (3550)
T KOG0889|consen 984 TFLDALVESLSHEN-SEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIE 1062 (3550)
T ss_pred HHHHHHHHHHhccc-hhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehh
Confidence 35777888888766 666666666665544311 0 000000112344555555555444444444445555554
Q ss_pred CCchhhhhHh--hcCChHHHHHhhcCCC------chhHHHHHHHHhhhhccCC---CCCChhhhhchHHHHHHhhcCCCh
Q 009636 189 DSPRCRDLVL--SQGGLVPLLAQLNGQP------KLSMLRNATWTLSNFCRGK---PQPPFDQVSPALPALAHLIHSNDD 257 (530)
Q Consensus 189 ~~~~~~~~i~--~~~~i~~Ll~ll~~~~------~~~~~~~a~~~L~~L~~~~---~~~~~~~~~~~l~~L~~ll~~~d~ 257 (530)
+.+ ...+. ...++.+++..+.+.. ........+.-+...+... ..........++..++.-+.+++.
T Consensus 1063 ~~~--~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~ 1140 (3550)
T KOG0889|consen 1063 SMP--SLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNS 1140 (3550)
T ss_pred hch--HHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCch
Confidence 444 11111 1224444444443111 1122222222222222222 222223446677788888888899
Q ss_pred hHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhh---------CCCCchhHHHHHHHHhHhhcCCchh---hHHHh-
Q 009636 258 EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL---------MHPSPSVLIPALRTVGNIVTGDDMQ---TQCVI- 324 (530)
Q Consensus 258 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL---------~~~~~~~~~~al~~L~nl~~~~~~~---~~~~~- 324 (530)
.|+..+..+|.+++.....-+..+. ..+-+++ ....-..+.-.+.++..++.-.+.. ...+.
T Consensus 1141 ~VR~~~~~~L~~i~~~s~~~v~~L~-----~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~l~p~~f~~~~~l~~ 1215 (3550)
T KOG0889|consen 1141 DVREFSQKLLRLISELSGKSVVKLL-----EPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLSLGPCLFDFTEELYR 1215 (3550)
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHH-----HHHHHHHhccccccccccCCHHHHhhhHHHHHHHHHcCCcccCchHHHHH
Confidence 9999999998888755421111111 1222222 1111122222222222222211110 00000
Q ss_pred ------------hcCchHHHHHhhcCCC---chhHHHHHHHHHHHHhcCCHHHHHHH--HHhCcHHHHHHHHhcCchhHH
Q 009636 325 ------------EYQALPCLLNLLSGNY---KKSIKKEACWTVSNITAGNREQIQAV--IEANIIGPLVALLENAEFDIK 387 (530)
Q Consensus 325 ------------~~~~l~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l--~~~~~i~~L~~ll~~~~~~v~ 387 (530)
+....- +.+...... .-.+|..+..+++......+-..... ...+++..+...+....+++.
T Consensus 1216 l~~~~~~La~~~~~~~~~-i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~~~Ei~ 1294 (3550)
T KOG0889|consen 1216 LKRFLIALADAEEDELAT-IQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKRSSELI 1294 (3550)
T ss_pred HHHHHHHhhhhhhhhhhh-hhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCChHHHH
Confidence 000000 222222110 11235555555555444222211111 124678888888888889999
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHH
Q 009636 388 KEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILK 442 (530)
Q Consensus 388 ~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~ 442 (530)
..+..++.+.... ++..-+.+++.+.=+.|..+-+... .....+..+..+..
T Consensus 1295 ~~~~~~l~~v~~~-~~~~~ke~lq~~lrplL~~l~d~~~--lsv~~l~~ls~l~~ 1346 (3550)
T KOG0889|consen 1295 EVALEGLRKVLAQ-DVKLPKELLQSHLRPLLMNLSDHNN--LSVPGLEGLSRLLR 1346 (3550)
T ss_pred HHHHHHHHhhhhc-cccccHHHHHhhHHHHHHhhhHhhh--hhHHHHHHHHHHHH
Confidence 9999999888775 2333334444443333333332222 33344444444443
No 367
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=56.33 E-value=1.4e+02 Score=26.35 Aligned_cols=141 Identities=15% Similarity=0.116 Sum_probs=87.7
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHH-HHHHHhhhCCCchhhhh
Q 009636 119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQA-VWALGNIAGDSPRCRDL 196 (530)
Q Consensus 119 ~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~i~~~a-~~~L~nl~~~~~~~~~~ 196 (530)
..+..+..++. .+.+..|+.++.......... .++.+-..+.. ++..+.+.. ..+++.+....
T Consensus 54 ~l~~~L~~~~~-~E~~~la~~il~~~~~~~~~~--------~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~------ 118 (213)
T PF08713_consen 54 ELADELWESGY-REERYLALLILDKRRKKLTEE--------DLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH------ 118 (213)
T ss_dssp HHHHHHHCSSC-HHHHHHHHHHHHHCGGG--HH--------HHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH------
T ss_pred HHHHHHcCCch-HHHHHHHHHHhHHHhhhhhHH--------HHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh------
Confidence 34556667776 788888887776544311111 24556666655 567777665 45555553221
Q ss_pred HhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChH
Q 009636 197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTND 276 (530)
Q Consensus 197 i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~ 276 (530)
....+.+...+ .+.+.-.++.++-++...... .....++..+...+.+++.-++..+.|+|..++..+++
T Consensus 119 ---~~~~~~~~~W~-~s~~~w~rR~~~v~~~~~~~~------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~ 188 (213)
T PF08713_consen 119 ---PEALELLEKWA-KSDNEWVRRAAIVMLLRYIRK------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPD 188 (213)
T ss_dssp ---GGHHHHHHHHH-HCSSHHHHHHHHHCTTTHGGG------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HH
T ss_pred ---HHHHHHHHHHH-hCCcHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHH
Confidence 11344445555 777888888887776655544 23345566666777788899999999999999988877
Q ss_pred HHHHHHHh
Q 009636 277 KIQAVIEA 284 (530)
Q Consensus 277 ~~~~~~~~ 284 (530)
.....+..
T Consensus 189 ~v~~~l~~ 196 (213)
T PF08713_consen 189 EVLEFLQK 196 (213)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66555543
No 368
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=55.39 E-value=2e+02 Score=27.61 Aligned_cols=157 Identities=10% Similarity=0.107 Sum_probs=91.5
Q ss_pred chHHHHHHhhcCC----ChhHHHHHHHHHHHhccCChHHHHHHHHh-----------CcHHHHHHhhC------CCCchh
Q 009636 243 PALPALAHLIHSN----DDEVLTDACWALSYLSDGTNDKIQAVIEA-----------GVFPRLAEFLM------HPSPSV 301 (530)
Q Consensus 243 ~~l~~L~~ll~~~----d~~v~~~a~~~l~~l~~~~~~~~~~~~~~-----------~~l~~L~~lL~------~~~~~~ 301 (530)
.++..|+.++-.. .-+++..++.++.....++++....+++. .....|+..|- +.++--
T Consensus 34 pvi~~LL~~~L~~~~~~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~ 113 (312)
T PF04869_consen 34 PVIDALLNLMLNENSVQPFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYR 113 (312)
T ss_dssp EHHHHHHHHHT-TT--S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHH
T ss_pred cHHHHHHHHHhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHH
Confidence 3444444443322 45678888888877777666655555443 11122444444 223434
Q ss_pred HHHHHHHHhHhhcCCchhhHHHhhc------------CchHHHHHhhcC----CCchhHHHHHHHHHHHHhcCCHHHHHH
Q 009636 302 LIPALRTVGNIVTGDDMQTQCVIEY------------QALPCLLNLLSG----NYKKSIKKEACWTVSNITAGNREQIQA 365 (530)
Q Consensus 302 ~~~al~~L~nl~~~~~~~~~~~~~~------------~~l~~L~~lL~~----~~~~~v~~~a~~~L~nl~~~~~~~~~~ 365 (530)
..-|+.++..+...+++.++.++.- ..++.+..+|.. ..++.++..-...|+-...+++..+..
T Consensus 114 ~wfAa~il~hll~dn~~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~ 193 (312)
T PF04869_consen 114 CWFAAVILMHLLRDNPEAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVND 193 (312)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHH
Confidence 5568888888888777766555421 245666666644 336677777777777777888999988
Q ss_pred HHHhC-cHHHHHHHHhcC---chhHHHHHHHHHHHhhc
Q 009636 366 VIEAN-IIGPLVALLENA---EFDIKKEAAWAISNATS 399 (530)
Q Consensus 366 l~~~~-~i~~L~~ll~~~---~~~v~~~a~~aL~nl~~ 399 (530)
++..+ .++.|+...... +.-|+--++..|+-+..
T Consensus 194 FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicye 231 (312)
T PF04869_consen 194 FLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICYE 231 (312)
T ss_dssp HHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHHH
T ss_pred HHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHHH
Confidence 88764 788888875322 55666666666665544
No 369
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=55.37 E-value=3.1e+02 Score=29.87 Aligned_cols=317 Identities=14% Similarity=0.164 Sum_probs=153.1
Q ss_pred HHHHHhhcCC--ChHHHHHHHHHHHHhhcCC---CCCcHHHHHHc--CCH-HHHHHhhcCCCCHHHHHHHHHHHHHHhcC
Q 009636 76 PVMVAGVWSN--DSGVQYECTTQFRKLLSIE---RSPPIEEVIRS--GVV-PRFVEFLLREDYPQLQFEAAWALTNIASG 147 (530)
Q Consensus 76 ~~l~~~l~s~--~~~~~~~a~~~l~~l~~~~---~~~~~~~~~~~--g~v-~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~ 147 (530)
-.++..+.++ |+.++..|+..+.+.+..+ ..+....+.++ ..+ ..++.++-+.. ..+|.+--.+|+-++..
T Consensus 40 l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~e~ikslIv~lMl~s~-~~iQ~qlseal~~Ig~~ 118 (960)
T KOG1992|consen 40 LLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDREQIKSLIVTLMLSSP-FNIQKQLSEALSLIGKR 118 (960)
T ss_pred HHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccchhHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHhcc
Confidence 3455666543 6788899999998887631 01111122211 122 23456655555 68898888888888864
Q ss_pred C-hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhh-CCCchhhhhH------hhcC-ChHHHHHhhc-------
Q 009636 148 T-SEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIA-GDSPRCRDLV------LSQG-GLVPLLAQLN------- 211 (530)
Q Consensus 148 ~-~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~-~~~~~~~~~i------~~~~-~i~~Ll~ll~------- 211 (530)
+ |+....+ ++.|+.-+++.+-.+....+.+-..|- ...+.+|..- ...+ +-.++..++.
T Consensus 119 DFP~kWptL-----l~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~ 193 (960)
T KOG1992|consen 119 DFPDKWPTL-----LPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQ 193 (960)
T ss_pred ccchhhHHH-----HHHHHhhccccchHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHh
Confidence 3 4444333 456666666544333333332222222 1122222110 0000 1123333331
Q ss_pred -CCCchh-------HHHHHHHHhhhhccCC-CCCChhhhhchHHHHHHhhcCCC-------------hhHHHHHHHHHHH
Q 009636 212 -GQPKLS-------MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSND-------------DEVLTDACWALSY 269 (530)
Q Consensus 212 -~~~~~~-------~~~~a~~~L~~L~~~~-~~~~~~~~~~~l~~L~~ll~~~d-------------~~v~~~a~~~l~~ 269 (530)
...+.. +..-.+...+.|+..+ |.--.......++...+++..++ .+++..+|..+.-
T Consensus 194 ~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~L 273 (960)
T KOG1992|consen 194 RHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNL 273 (960)
T ss_pred hcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHH
Confidence 112222 2222333444555443 22222334556666666665221 2344556666655
Q ss_pred hccCChHHHHHHHHhCcHHHHHHhhCCCC-----chhHHHHHHHHhHhhcCCch--------------------------
Q 009636 270 LSDGTNDKIQAVIEAGVFPRLAEFLMHPS-----PSVLIPALRTVGNIVTGDDM-------------------------- 318 (530)
Q Consensus 270 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-----~~~~~~al~~L~nl~~~~~~-------------------------- 318 (530)
.+...++..+.++. .++.....+|.+-. ..+...|+..|.+++.....
T Consensus 274 Y~~kYeEef~~fl~-~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~ 352 (960)
T KOG1992|consen 274 YATKYEEEFQPFLP-DFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILRE 352 (960)
T ss_pred HHHhhHHHHHhhHH-HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccch
Confidence 55555555553333 34444444444322 23445566666666542111
Q ss_pred hhHHHhhcCchHHHHHhhcCCCchhH-HHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHH-h--cCchhHHHHHHHHH
Q 009636 319 QTQCVIEYQALPCLLNLLSGNYKKSI-KKEACWTVSNITAGNREQIQAVIEANIIGPLVALL-E--NAEFDIKKEAAWAI 394 (530)
Q Consensus 319 ~~~~~~~~~~l~~L~~lL~~~~~~~v-~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll-~--~~~~~v~~~a~~aL 394 (530)
....+.+.+.+..+-.-|... +.+. |+.||-.+.-++......+..++.. .+..++.-. . +.++.-+..|.+.+
T Consensus 353 eDeElFED~pleYiRRDlEGs-DvdTRRR~a~dlvrgL~~~fe~~vt~v~~~-~v~~~l~~y~~nPS~nWk~kd~aiyL~ 430 (960)
T KOG1992|consen 353 EDEELFEDNPLEYIRRDLEGS-DVDTRRRAAIDLVRGLCKNFEGQVTGVFSS-EVQRLLDQYSKNPSGNWKKKDRAIYLV 430 (960)
T ss_pred hhHHHhccCHHHHHHHhcccC-CcchhHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHhccCCCccccccchhhhhh
Confidence 112223445566666666655 5444 4566777888877654444444432 233333322 2 23666677777777
Q ss_pred HHhhcCC
Q 009636 395 SNATSGG 401 (530)
Q Consensus 395 ~nl~~~~ 401 (530)
..++..+
T Consensus 431 talaik~ 437 (960)
T KOG1992|consen 431 TALAIKG 437 (960)
T ss_pred HHHHhhc
Confidence 7777653
No 370
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=55.30 E-value=77 Score=24.75 Aligned_cols=80 Identities=16% Similarity=0.106 Sum_probs=52.8
Q ss_pred CchHHHHHhhcCCC---chhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC--chhHHHHHHHHHHHhhcCC
Q 009636 327 QALPCLLNLLSGNY---KKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATSGG 401 (530)
Q Consensus 327 ~~l~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~nl~~~~ 401 (530)
|++..+-..+.+.+ ...-|+.+..++..+..-....+. .+.|.++..|.+. .++++..|+.+...+...-
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~-----~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L 85 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHIS-----SALPQIMACLQSALEIPELRSLALRCWHVLIKTL 85 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhC
Confidence 56666777776652 234588888888887663222221 2455666666554 5779999999999988876
Q ss_pred CHHHHHHHHH
Q 009636 402 THEQIKFLVI 411 (530)
Q Consensus 402 ~~~~~~~l~~ 411 (530)
+.+....+++
T Consensus 86 ~~~~l~~ll~ 95 (107)
T smart00802 86 KEEELGPLLD 95 (107)
T ss_pred CHHHHHHHHH
Confidence 6666666554
No 371
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=54.26 E-value=42 Score=27.83 Aligned_cols=43 Identities=26% Similarity=0.298 Sum_probs=24.0
Q ss_pred HHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhc
Q 009636 176 REQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC 230 (530)
Q Consensus 176 ~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~ 230 (530)
...|+..|+.+-++- -+.+|+.+| .+.+..+...|+.+|.+..
T Consensus 80 ~~~Av~LLGtM~GGY-----------NV~~LI~~L-~~~d~~lA~~Aa~aLk~Tl 122 (154)
T PF11791_consen 80 PAEAVELLGTMLGGY-----------NVQPLIDLL-KSDDEELAEEAAEALKNTL 122 (154)
T ss_dssp HHHHHHHHTTS-SST-----------THHHHHHGG---G-TTTHHHHHHHHHT--
T ss_pred HHHHHHHHhhccCCC-----------cHHHHHHHH-cCCcHHHHHHHHHHHHhhH
Confidence 455666666665442 256677777 6667777777777776544
No 372
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.93 E-value=2.3e+02 Score=27.90 Aligned_cols=131 Identities=12% Similarity=0.130 Sum_probs=84.1
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHh
Q 009636 245 LPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVI 324 (530)
Q Consensus 245 l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~ 324 (530)
+.-|+..+.+.+..++.+++..+..+....++... .-...+++.+..+..+.+..+|......+-.+............
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~-~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~ 138 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQ-SHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPM 138 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHH-HHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcch
Confidence 45567778889999999999998877655443333 12235677777888888888888888887775543222112222
Q ss_pred hcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCC-HHHHHHHHHhCcHHHHHHHH
Q 009636 325 EYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN-REQIQAVIEANIIGPLVALL 379 (530)
Q Consensus 325 ~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~~i~~L~~ll 379 (530)
-.=+++.+...+.+. .+.++..+...+.-+.... +........ +++.+.+.+
T Consensus 139 ~~l~~~yi~~AMThi-t~~i~~dslkfL~~Ll~~~~p~~~~~~~~--il~n~~d~i 191 (393)
T KOG2149|consen 139 VSLLMPYISSAMTHI-TPEIQEDSLKFLSLLLERYPDTFSRYASK--ILENFKDVI 191 (393)
T ss_pred HHHHHHHHHHHHhhc-cHHHHHhhHHHHHHHHHHcChHHHHHHHH--HHHHHHHHH
Confidence 233456666777777 8999999999998887743 333333332 444444443
No 373
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=53.83 E-value=52 Score=26.44 Aligned_cols=97 Identities=20% Similarity=0.191 Sum_probs=57.3
Q ss_pred CchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcc---CCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhh
Q 009636 382 AEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLL---VCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVF 458 (530)
Q Consensus 382 ~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL---~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~ 458 (530)
.+...-...+.-|+..+... ..+.. ++..|..-| +..+..++..+|..|..|+..|+.. +
T Consensus 15 d~~gp~~~~l~eIa~~t~~~--~~~~~-----I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~----------~ 77 (125)
T PF01417_consen 15 DPWGPPGKLLAEIAQLTYNS--KDCQE-----IMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSER----------F 77 (125)
T ss_dssp SSSS--HHHHHHHHHHTTSC--HHHHH-----HHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HH----------H
T ss_pred CCCCcCHHHHHHHHHHHhcc--ccHHH-----HHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHH----------H
Confidence 34445555666777777643 33333 355666666 6677889999999999999988753 3
Q ss_pred HHHh-hhhccHHHHHHHhc------CCCHHHHHHHHHHHHHhCC
Q 009636 459 TQMI-DDAEGLEKIESLQT------HDNAEIYEKSVKLLETYWL 495 (530)
Q Consensus 459 ~~~l-~~~~~~~~l~~l~~------~~~~~v~~~a~~il~~~~~ 495 (530)
..-+ .....+..+..++. .....|+++|..+++-..+
T Consensus 78 ~~~~~~~~~~I~~l~~f~~~d~~g~d~~~~VR~~A~~i~~lL~d 121 (125)
T PF01417_consen 78 VDELRDHIDIIRELQDFQYVDPKGKDQGQNVREKAKEILELLND 121 (125)
T ss_dssp HHHHHHTHHHHHGGGG---BBTTSTBHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhhcceeeccCCCCccHHHHHHHHHHHHHHHhCC
Confidence 3333 22233444444333 1223599999999987654
No 374
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=53.53 E-value=54 Score=26.94 Aligned_cols=125 Identities=17% Similarity=0.248 Sum_probs=69.2
Q ss_pred HHHHHHHHhhhhccCC-CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC---------hHHHHH----HHH
Q 009636 218 MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT---------NDKIQA----VIE 283 (530)
Q Consensus 218 ~~~~a~~~L~~L~~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~---------~~~~~~----~~~ 283 (530)
++...+.+++.++... |. .....++.++.++.++ +......+..+..+.+.- ..+... +.+
T Consensus 4 i~~kl~~~l~~i~~~~~P~----~Wp~~l~~l~~~~~~~-~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~ 78 (148)
T PF08389_consen 4 IRNKLAQVLAEIAKRDWPQ----QWPDFLEDLLQLLQSS-PQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRS 78 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTT----TSTTHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHChh----hCchHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHH
Confidence 4445555666665543 22 1234566666666653 444444444444443110 111111 111
Q ss_pred --hCcHHHHHHhhCCCC----chhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHH
Q 009636 284 --AGVFPRLAEFLMHPS----PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTV 352 (530)
Q Consensus 284 --~~~l~~L~~lL~~~~----~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L 352 (530)
..+++.+.+++.... ..+...++.++.....--+ ...+.+.++++.+..+|.++ .++..|+.+|
T Consensus 79 ~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~--~~~i~~~~~l~~~~~~l~~~---~~~~~A~~cl 148 (148)
T PF08389_consen 79 NSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIP--IELIINSNLLNLIFQLLQSP---ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS---HHHHHSSSHHHHHHHHTTSC---CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCC--HHHhccHHHHHHHHHHcCCH---HHHHHHHHhC
Confidence 134555555554433 6788899999999887333 34566778999999999644 4577777654
No 375
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=51.72 E-value=18 Score=30.03 Aligned_cols=125 Identities=13% Similarity=0.139 Sum_probs=83.6
Q ss_pred CchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc--CCHHHHHHHHHhCcHHHHHHH-HhcCchhHHHHHHH
Q 009636 316 DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA--GNREQIQAVIEANIIGPLVAL-LENAEFDIKKEAAW 392 (530)
Q Consensus 316 ~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~~~i~~L~~l-l~~~~~~v~~~a~~ 392 (530)
++...+..++.+++..+.++++......++.....+++-+.. .++..+.+++..+.+..++.. +.-.+.++...-..
T Consensus 15 ~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYIs 94 (149)
T PF09758_consen 15 DPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYIS 94 (149)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHHH
Confidence 344566777889999999999885477888888888777765 345555566667777776664 33346788888888
Q ss_pred HHHHhhcCCCHHHHHHHHH--cCChHH---HHhccCCCChHHHHHHHHHHHHH
Q 009636 393 AISNATSGGTHEQIKFLVI--QGCIKP---LCDLLVCPDPRIVTVCLEGLENI 440 (530)
Q Consensus 393 aL~nl~~~~~~~~~~~l~~--~~~i~~---L~~lL~~~~~~~~~~al~~l~~l 440 (530)
.|..++..-+.+....+.. .+-.+. =+.+...+|+.++..+-..+-++
T Consensus 95 fLK~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni 147 (149)
T PF09758_consen 95 FLKTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNI 147 (149)
T ss_pred HHHHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhh
Confidence 8888887665555555443 233333 35566778877776655544443
No 376
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=51.52 E-value=3.4e+02 Score=29.26 Aligned_cols=57 Identities=18% Similarity=0.226 Sum_probs=44.2
Q ss_pred ChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC
Q 009636 86 DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT 148 (530)
Q Consensus 86 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~ 148 (530)
++.+.-..+.+++..+|- -.+..++..-.++.|.+++.. .++|.+|+.|+..+....
T Consensus 206 npgl~~~cLdc~g~fVSW---IdInLIaNd~f~nLLy~fl~i---eelR~aac~cilaiVsKk 262 (980)
T KOG2021|consen 206 NPGLINSCLDCIGSFVSW---IDINLIANDYFLNLLYKFLNI---EELRIAACNCILAIVSKK 262 (980)
T ss_pred CchHHHHHHHHHHHHhhh---hhhhhhhchhHHHHHHHHHhH---HHHHHHHHHHHHHHHhcC
Confidence 788888888888888764 234445566788899998873 689999999999998743
No 377
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=51.25 E-value=55 Score=31.78 Aligned_cols=73 Identities=7% Similarity=0.050 Sum_probs=60.5
Q ss_pred CcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccC-CCChHHHHHHHHHHHHHHH
Q 009636 370 NIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV-CPDPRIVTVCLEGLENILK 442 (530)
Q Consensus 370 ~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~-~~~~~~~~~al~~l~~ll~ 442 (530)
.++..+.+-|...++.|...|+..+..++.++....+..+.+..+...|..++. ..++++....-..+.....
T Consensus 45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 367788888999999999999999999999888888888888899999999988 6777777766666555544
No 378
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=51.04 E-value=93 Score=30.09 Aligned_cols=77 Identities=29% Similarity=0.414 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhCC--ChHHHHHhhCC---CCHHHHHHHHHHHHhhhCCCchhhhhHh------hc
Q 009636 132 QLQFEAAWALTNIASGTSEHTKVVIDHG--AVPIFVKLLYS---PSDDVREQAVWALGNIAGDSPRCRDLVL------SQ 200 (530)
Q Consensus 132 ~i~~~a~~~L~~l~~~~~~~~~~~~~~g--~i~~L~~ll~~---~~~~i~~~a~~~L~nl~~~~~~~~~~i~------~~ 200 (530)
.++..|+.++..+.. .+.....++..+ ++..|+.++.. -...++..|+.+|..|+.+...+.+.+. ..
T Consensus 237 ~iRllAi~~l~~~~~-~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~H 315 (329)
T PF06012_consen 237 QIRLLAIANLVYIHP-ESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSH 315 (329)
T ss_pred HHHHHHHHHHHhhCC-CHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCc
Confidence 455566666665555 566666777666 88999999876 3467899999999999987775555443 34
Q ss_pred CChHHHHHh
Q 009636 201 GGLVPLLAQ 209 (530)
Q Consensus 201 ~~i~~Ll~l 209 (530)
|++..+++.
T Consensus 316 GiL~~llR~ 324 (329)
T PF06012_consen 316 GILPQLLRK 324 (329)
T ss_pred ccHHHHHHH
Confidence 555555543
No 379
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.00 E-value=1.1e+02 Score=30.99 Aligned_cols=71 Identities=8% Similarity=-0.005 Sum_probs=57.9
Q ss_pred cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCC--ChHHHHHHHHHHHHHH
Q 009636 371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP--DPRIVTVCLEGLENIL 441 (530)
Q Consensus 371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~--~~~~~~~al~~l~~ll 441 (530)
++..|.+.+.+.++.++..|+..|-.++.++...+...+.+.+++.-++.+.+.. +.+|+..++..|...-
T Consensus 39 AvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~ 111 (470)
T KOG1087|consen 39 AVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQ 111 (470)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHH
Confidence 5667777788888899999999999899988877777888999999999988755 6678888887766544
No 380
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=49.54 E-value=3.7e+02 Score=29.06 Aligned_cols=101 Identities=17% Similarity=0.281 Sum_probs=65.7
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChh
Q 009636 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFD 239 (530)
Q Consensus 160 ~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~ 239 (530)
+|..|..+...+-+.++..++.++.++....|+-... .+..+++.| .+++..+...|.+.|.+|....|+....
T Consensus 305 fievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~~-----LL~~lVNKl-GDpqnKiaskAsylL~~L~~~HPnMK~V 378 (988)
T KOG2038|consen 305 FIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQENN-----LLVLLVNKL-GDPQNKIASKASYLLEGLLAKHPNMKIV 378 (988)
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHHH-----HHHHHHHhc-CCcchhhhhhHHHHHHHHHhhCCcceee
Confidence 3444444444566789999999999999888864333 566778888 7778888888999999988887766655
Q ss_pred hhhchHHHHHHhhcCC--ChhHHHHHHHHHHHh
Q 009636 240 QVSPALPALAHLIHSN--DDEVLTDACWALSYL 270 (530)
Q Consensus 240 ~~~~~l~~L~~ll~~~--d~~v~~~a~~~l~~l 270 (530)
+... +..++..+ +.....+++..|..+
T Consensus 379 vi~E----Ier~~FRpn~~~ra~Yyav~fLnQ~ 407 (988)
T KOG2038|consen 379 VIDE----IERLAFRPNVSERAHYYAVIFLNQM 407 (988)
T ss_pred hHHH----HHHHHcccCccccceeehhhhhhhh
Confidence 4433 33333322 233344455555443
No 381
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=49.47 E-value=15 Score=20.24 Aligned_cols=14 Identities=14% Similarity=0.380 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHhc
Q 009636 344 IKKEACWTVSNITA 357 (530)
Q Consensus 344 v~~~a~~~L~nl~~ 357 (530)
||..|+++|+++..
T Consensus 1 VR~~Aa~aLg~igd 14 (27)
T PF03130_consen 1 VRRAAARALGQIGD 14 (27)
T ss_dssp HHHHHHHHHGGG-S
T ss_pred CHHHHHHHHHHcCC
Confidence 68899999999853
No 382
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=47.60 E-value=21 Score=27.75 Aligned_cols=41 Identities=24% Similarity=0.208 Sum_probs=32.9
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHH
Q 009636 389 EAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVT 431 (530)
Q Consensus 389 ~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~ 431 (530)
+.+..+..++. .|+....|++.|++..|+.+|..++.++..
T Consensus 65 ~~Ik~l~~La~--~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 65 EEIKKLSVLAT--APELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHccC--ChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 34556666666 568889999999999999999999888754
No 383
>KOG3132 consensus m3G-cap-specific nuclear import receptor (Snurportin1) [RNA processing and modification]
Probab=47.19 E-value=14 Score=32.94 Aligned_cols=45 Identities=24% Similarity=0.419 Sum_probs=36.6
Q ss_pred hHhhhhcCCCCCchHHhhhhhhHHHHHHHHhhhHHHHhhhhcccc
Q 009636 10 DSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQ 54 (530)
Q Consensus 10 ~~~~~~~k~~~~~~e~~~~r~~~~~~lRk~~r~~~l~~~R~~~~~ 54 (530)
..|...||+..+.-|.+.||++...++.|.+|-+...+.|+....
T Consensus 24 hpR~sQykn~~s~aeQ~arrr~~llelQks~r~D~~~~~r~lA~d 68 (325)
T KOG3132|consen 24 HPRQSQYKNLTSDAEQRARRRASLLELQKSSRPDVDPEIRSLAVD 68 (325)
T ss_pred CchhhhhhhhhhHHHHHHHHHHHHHHhhhcCCCCccHHHHhhccc
Confidence 478899999556677777777779999999999999999986543
No 384
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=47.14 E-value=2.1e+02 Score=29.09 Aligned_cols=79 Identities=16% Similarity=0.228 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH
Q 009636 87 SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK 166 (530)
Q Consensus 87 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ 166 (530)
...+..|+++|..+++.-..+....+.+ +.|+.+|++.. ..-|..|+.++...+...........-..+.+.|..
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~----~~L~~~L~S~s-a~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~ 175 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIFQ----PLLLPYLNSPS-ATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLE 175 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHH----HHHHHHhcchh-HHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHH
Confidence 3467789999998887643444443322 26888998877 566677777888777643222111001123456667
Q ss_pred hhCC
Q 009636 167 LLYS 170 (530)
Q Consensus 167 ll~~ 170 (530)
.|..
T Consensus 176 ~L~~ 179 (441)
T PF12054_consen 176 ILEN 179 (441)
T ss_pred HHcC
Confidence 7764
No 385
>PLN03205 ATR interacting protein; Provisional
Probab=45.83 E-value=3.1e+02 Score=27.02 Aligned_cols=161 Identities=15% Similarity=0.192 Sum_probs=91.2
Q ss_pred hhchHHHHHHhhcCCChhHHHHHHHHHHHhcc---CChHHHHHHHHhCcHH---HHHHh-hCCCCchhHHHHHHHHhHhh
Q 009636 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSD---GTNDKIQAVIEAGVFP---RLAEF-LMHPSPSVLIPALRTVGNIV 313 (530)
Q Consensus 241 ~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~---~~~~~~~~~~~~~~l~---~L~~l-L~~~~~~~~~~al~~L~nl~ 313 (530)
...++..|+.+..-++.-+...+++.|..+.. ++..+...-.+...+. .+.++ ..+.+..++..|+.++.-|.
T Consensus 321 lqtLlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIl 400 (652)
T PLN03205 321 LKSLVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIV 400 (652)
T ss_pred HHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhh
Confidence 34556666666666666666666666655432 2222222223333322 22222 23456778888988887777
Q ss_pred cCCchh--hHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH---------------------H--
Q 009636 314 TGDDMQ--TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVI---------------------E-- 368 (530)
Q Consensus 314 ~~~~~~--~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~---------------------~-- 368 (530)
..++.+ ++.+....+++.+..+|+.+....|+++|...|--+... +.....+. .
T Consensus 401 mssna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLNC-pklL~iFcSg~~e~~~ad~eNd~~~n~st~k~ 479 (652)
T PLN03205 401 MSTDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLNC-PKLYDRFDSLHEEKNSSDTENDSEGNFFALEA 479 (652)
T ss_pred hccchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHcC-cHHHHHHhcCCccccccccccccccccccHHH
Confidence 655543 334445567888888887764567888887654433211 11111110 0
Q ss_pred -hCcHHHHHHHHhcC-----chhHHHHHHHHHHHhhcCCC
Q 009636 369 -ANIIGPLVALLENA-----EFDIKKEAAWAISNATSGGT 402 (530)
Q Consensus 369 -~~~i~~L~~ll~~~-----~~~v~~~a~~aL~nl~~~~~ 402 (530)
..++.-|-+.+... +.++++.+...|.-++..|.
T Consensus 480 fSsIlegLAeCiac~~~s~~dIeLck~aiimLAflASSGk 519 (652)
T PLN03205 480 FGKIFEGLADCLTSPRKTSEDLELCRNVIMILALAASSGN 519 (652)
T ss_pred HHHHHHHHHHHHcCCCCChhhhHHHHHHHHHHHHHHhcCC
Confidence 11344455555332 67899999999999988764
No 386
>PF06743 FAST_1: FAST kinase-like protein, subdomain 1; InterPro: IPR010622 This entry represents a conserved region of eukaryotic Fas-activated serine/threonine (FAST) kinases that contains several conserved leucine residues. FAST kinase is rapidly activated during Fas-mediated apoptosis, when it phosphorylates TIA-1, a nuclear RNA-binding protein that has been implicated as an effector of apoptosis []. Note that many family members are hypothetical proteins.; GO: 0004672 protein kinase activity
Probab=45.59 E-value=68 Score=22.77 Aligned_cols=67 Identities=15% Similarity=0.224 Sum_probs=44.8
Q ss_pred HHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHH
Q 009636 221 NATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFP 288 (530)
Q Consensus 221 ~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~ 288 (530)
..+|+.+.|--. |.........+...+..-+..-++....+++|.++.+-..+.+.++.+.+..++.
T Consensus 3 ~il~~fa~LNy~-P~~~~~f~~~~~~~L~~~l~~~~p~~ll~~v~Sl~~l~~~p~~~l~~vf~~~Fl~ 69 (71)
T PF06743_consen 3 SILLPFARLNYQ-PPNAEEFFEKLIERLESYLDEFSPEDLLDLVWSLCLLQRFPEDLLNKVFSPDFLQ 69 (71)
T ss_pred HHHHHHHhcCCC-CCCHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhCCHHHHHHHcCHHHHh
Confidence 345555555533 3333344455666666666666888999999999999888887777776655544
No 387
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=45.32 E-value=64 Score=28.69 Aligned_cols=78 Identities=13% Similarity=0.207 Sum_probs=54.4
Q ss_pred CcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHH
Q 009636 285 GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQ 364 (530)
Q Consensus 285 ~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 364 (530)
...+.+...+.+++.-.+..++.++....... .. ..++..+...+.++ +.-+++...|+|..++..+++...
T Consensus 120 ~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~~--~~-----~~~l~~~~~~~~d~-~~~vq~ai~w~L~~~~~~~~~~v~ 191 (213)
T PF08713_consen 120 EALELLEKWAKSDNEWVRRAAIVMLLRYIRKE--DF-----DELLEIIEALLKDE-EYYVQKAIGWALREIGKKDPDEVL 191 (213)
T ss_dssp GHHHHHHHHHHCSSHHHHHHHHHCTTTHGGGC--HH-----HHHHHHHHHCTTGS--HHHHHHHHHHHHHHCTT-HHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHhc--CH-----HHHHHHHHHHcCCc-hHHHHHHHHHHHHHHHHhCHHHHH
Confidence 45677788888888888888877665555431 11 12344555566666 889999999999999999888877
Q ss_pred HHHHhC
Q 009636 365 AVIEAN 370 (530)
Q Consensus 365 ~l~~~~ 370 (530)
.+++.+
T Consensus 192 ~~l~~~ 197 (213)
T PF08713_consen 192 EFLQKN 197 (213)
T ss_dssp HHHHHS
T ss_pred HHHHHC
Confidence 777643
No 388
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=44.98 E-value=4.4e+02 Score=28.57 Aligned_cols=149 Identities=11% Similarity=0.098 Sum_probs=91.8
Q ss_pred cCCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHH--HHHH-----------------------------cCCHHH
Q 009636 72 LENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIE--EVIR-----------------------------SGVVPR 120 (530)
Q Consensus 72 ~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~--~~~~-----------------------------~g~v~~ 120 (530)
+..+..|+....+......++|+.+|..++-..--|.+. .+-+ ..+|..
T Consensus 229 lk~lEtLls~c~KKsk~~a~~~l~~LkdlfI~~LLPdRKLk~f~qrp~~~l~~~~~~~k~Ll~WyfE~~LK~ly~rfiev 308 (988)
T KOG2038|consen 229 LKSLETLLSSCKKKSKRDALQALPALKDLFINGLLPDRKLKYFSQRPLLELTNKRLRDKILLMWYFEHELKILYFRFIEV 308 (988)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCcchhhHHHhhChhhhccccccccceehHHHHHHHHHHHHHHHHHH
Confidence 346677777777666566667777777665432222211 0000 123333
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhc
Q 009636 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQ 200 (530)
Q Consensus 121 Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~ 200 (530)
|..+..++- +.++..++..+..+..+.|++-.. ++..++.-|..+...+...|...|.+|...+|..+..+
T Consensus 309 Le~lS~D~L-~~vk~raL~ti~~lL~~kPEqE~~-----LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~Vv--- 379 (988)
T KOG2038|consen 309 LEELSKDPL-EEVKKRALKTIYDLLTNKPEQENN-----LLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIVV--- 379 (988)
T ss_pred HHHHccccH-HHHHHHHHHHHHHHHhCCcHHHHH-----HHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceeeh---
Confidence 334434444 788999999999998877776544 35678888888888999999999999998888765543
Q ss_pred CChHHHHHhhc-CCCchhHHHHHHHHhhhhcc
Q 009636 201 GGLVPLLAQLN-GQPKLSMLRNATWTLSNFCR 231 (530)
Q Consensus 201 ~~i~~Ll~ll~-~~~~~~~~~~a~~~L~~L~~ 231 (530)
+..+..++- .+.+.....+++-+|..+..
T Consensus 380 --i~EIer~~FRpn~~~ra~Yyav~fLnQ~~L 409 (988)
T KOG2038|consen 380 --IDEIERLAFRPNVSERAHYYAVIFLNQMKL 409 (988)
T ss_pred --HHHHHHHHcccCccccceeehhhhhhhhHh
Confidence 344444442 22344444455555555443
No 389
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=44.84 E-value=3.7e+02 Score=27.76 Aligned_cols=207 Identities=13% Similarity=0.108 Sum_probs=112.6
Q ss_pred CcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHH------HhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC
Q 009636 285 GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQC------VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG 358 (530)
Q Consensus 285 ~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~------~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~ 358 (530)
|-++.|++.+++++++++..++..|-.+...+...... .+....+..+-..-+.. ++..+..-|.+|+-+|..
T Consensus 47 ~dLellVeriqd~d~~l~~~sLn~LkeviksStSsmtavpkplkfLrp~y~dl~~iydkw~-~~n~K~~LaDilS~l~m~ 125 (881)
T COG5110 47 GDLELLVERIQDPDIDLQNNSLNMLKEVIKSSTSSMTAVPKPLKFLRPNYLDLLEIYDKWL-EGNKKRWLADILSALCMV 125 (881)
T ss_pred ccHHHHHHHhhCCChHHHHHHHHHHHHHHhccccccccCCchhhhcCCCcchHHHHHhhcc-CcchhhHHHHHHHHHeee
Confidence 77899999999999999999999988876544322111 12222222222222333 555677778888888752
Q ss_pred C-----HHHHHHHHH----------hCcHHHHHHHHhc----------Cc-hhHHHHHHHHHHHhhcC-CCHHHHHHHHH
Q 009636 359 N-----REQIQAVIE----------ANIIGPLVALLEN----------AE-FDIKKEAAWAISNATSG-GTHEQIKFLVI 411 (530)
Q Consensus 359 ~-----~~~~~~l~~----------~~~i~~L~~ll~~----------~~-~~v~~~a~~aL~nl~~~-~~~~~~~~l~~ 411 (530)
. .+...+-++ +..+..|..-+.. +. .+.+.-+..++--+..+ +..+.+..+.+
T Consensus 126 yse~~kh~sL~YRl~g~i~D~~~WGHeYvrhLa~eI~ev~n~~~e~daps~~dt~~l~l~ivpfflkHNaE~dAiDlL~E 205 (881)
T COG5110 126 YSENGKHKSLAYRLEGNIIDLKEWGHEYVRHLAGEIAEVKNDQNEMDAPSFADTRDLGLEIVPFFLKHNAEFDAIDLLVE 205 (881)
T ss_pred cccccchhhHHHHhhcccCCHHHHHHHHHHHHHHHHHHHhcchhhccCCchhHHHHHHHHHhHHHHhcccchHHHHHHHH
Confidence 1 111222111 1223333332211 11 35666666666666554 34566778888
Q ss_pred cCChHHHHhccCCCChH-HHHHHHHHH------------HHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCC
Q 009636 412 QGCIKPLCDLLVCPDPR-IVTVCLEGL------------ENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHD 478 (530)
Q Consensus 412 ~~~i~~L~~lL~~~~~~-~~~~al~~l------------~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~ 478 (530)
-|.++.+.++.+..+.. +......+. ....+..-+.. +....+.-.++-..--..++....-.
T Consensus 206 vg~Iekv~~fVd~~n~~RvclYl~~cv~llp~pedVa~l~ta~~IYlk~~----~lt~av~~aiRl~~~~~i~e~~~a~~ 281 (881)
T COG5110 206 VGGIEKVLDFVDTHNYNRVCLYLEDCVPLLPPPEDVALLETALKIYLKMG----DLTRAVVGAIRLQKSKEIIEYVRAIE 281 (881)
T ss_pred hcchhhhhhhhcccchhHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhh----HHHHHHHHHHhcccHHHHHHHHHhcc
Confidence 89999999988765543 222222111 11111111100 01112233333233334455566778
Q ss_pred CHHHHHHHHHHHHH---hCCC
Q 009636 479 NAEIYEKSVKLLET---YWLD 496 (530)
Q Consensus 479 ~~~v~~~a~~il~~---~~~~ 496 (530)
++..++++..|+.+ ||+.
T Consensus 282 Dp~~kKQ~~YiLArq~~~~e~ 302 (881)
T COG5110 282 DPDYKKQCLYILARQNLYYEA 302 (881)
T ss_pred ChHHHHHHHHHHHhccCCccc
Confidence 99999999999987 4554
No 390
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.92 E-value=92 Score=34.20 Aligned_cols=96 Identities=18% Similarity=0.140 Sum_probs=68.1
Q ss_pred hhchHHHHHHhhcCCChhHHHHHHHHHHHhc----cCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCC
Q 009636 241 VSPALPALAHLIHSNDDEVLTDACWALSYLS----DGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGD 316 (530)
Q Consensus 241 ~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~----~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~ 316 (530)
...++.....+|.+.+..++..++.++.... ...+.... ++. -..+.++..+...++-+...|+.++-+++..+
T Consensus 801 v~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlP-lvh-q~W~~vie~~~~k~~L~v~~a~~~i~~m~~~s 878 (1014)
T KOG4524|consen 801 VLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLP-LVH-QTWPSVIECLLCKDPLIVQRAFSCIEQMGKYS 878 (1014)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhH-HHH-hhhhHHHHHHhcCchHHHHHHHHHHHHHHHHh
Confidence 3556666677888889999999988886643 33332222 333 46688889999999999999999999999877
Q ss_pred chhhHHHhhcCchHHHHHhhcC
Q 009636 317 DMQTQCVIEYQALPCLLNLLSG 338 (530)
Q Consensus 317 ~~~~~~~~~~~~l~~L~~lL~~ 338 (530)
......-+-..++|.+-.++..
T Consensus 879 gDFv~sR~l~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 879 GDFVASRFLEDVLPWLKHLCQD 900 (1014)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 7655444445666766655543
No 391
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=43.66 E-value=85 Score=27.89 Aligned_cols=95 Identities=13% Similarity=0.130 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcc
Q 009636 343 SIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLL 422 (530)
Q Consensus 343 ~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL 422 (530)
.+-..++..|..++.++.++...+.+ -++.++..+.......-..+..++..+..+ +++.+..+.+. .++.++.++
T Consensus 76 ~l~~~~~~lL~~f~~~n~~NQ~~l~~--~~~~l~~~~~~~~~~~~~~~~d~l~~i~~d-N~~L~~~i~e~-~I~~~i~ll 151 (207)
T PF01365_consen 76 ELFRLCYRLLRQFCRGNRENQKYLFK--HLDFLISIFMQLQIGYGLGALDVLTEIFRD-NPELCESISEE-HIEKFIELL 151 (207)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHH--HHH-----HHCCCH-TTHHHHHHHHHHHTT----------------------
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHH--HHhHHHHHHHHhhccCCchHHHHHHHHHHC-cHHHHHHhhHH-HHHHHHHHH
Confidence 56678899999999998877776665 233333333332222223566777777775 55666665444 388888888
Q ss_pred CCCChHHHHHHHHHHHHHHHh
Q 009636 423 VCPDPRIVTVCLEGLENILKV 443 (530)
Q Consensus 423 ~~~~~~~~~~al~~l~~ll~~ 443 (530)
...... ...+..|..++..
T Consensus 152 ~~~gr~--~~~L~~L~~lc~~ 170 (207)
T PF01365_consen 152 RKHGRQ--PRYLDFLSSLCVC 170 (207)
T ss_dssp ---------------------
T ss_pred HHcCCC--hHHHHHHhhhccc
Confidence 763322 2345556666554
No 392
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=43.53 E-value=4.9e+02 Score=28.78 Aligned_cols=39 Identities=26% Similarity=0.136 Sum_probs=31.4
Q ss_pred hhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009636 194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (530)
Q Consensus 194 ~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~ 232 (530)
.+.+.+...++.++.++..+.++.++.++..+|+.+.+.
T Consensus 183 iq~l~d~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~ 221 (838)
T KOG2073|consen 183 IQWLNDQELIPKLLELLNPSKDPDVQSNAGQTLCAIVRL 221 (838)
T ss_pred HHHHhhHHHHHHHHHHhCCccccchhHHHHHHHHHHHhc
Confidence 344556678999999997777889999999888888877
No 393
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=41.50 E-value=85 Score=23.31 Aligned_cols=66 Identities=11% Similarity=0.107 Sum_probs=41.8
Q ss_pred hhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHH----HhcCchhHHHHHHHHH
Q 009636 324 IEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVAL----LENAEFDIKKEAAWAI 394 (530)
Q Consensus 324 ~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~l----l~~~~~~v~~~a~~aL 394 (530)
.+..++.++..++.+..+.++|.....++.++.......+ ..| -+.++.+ ..+++..+...|..++
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i----~SG-W~~if~il~~aa~~~~e~lv~~af~~~ 83 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENI----KSG-WKVIFSILRAAAKDNDESLVRLAFQIV 83 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHH----Hhc-cHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 4456778888887665588999999999999976544332 334 2333333 3444556666665544
No 394
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=41.14 E-value=9.6e+02 Score=31.45 Aligned_cols=177 Identities=8% Similarity=0.049 Sum_probs=90.1
Q ss_pred cCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhch-----HHHHHHhhcCCChhHHHHHHHHHHHhccCC
Q 009636 200 QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPA-----LPALAHLIHSNDDEVLTDACWALSYLSDGT 274 (530)
Q Consensus 200 ~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~-----l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~ 274 (530)
.+++.+++.-+ .+++..++..+..+|.+++.............. +|...+.+..-.-.++.-.+.++.++....
T Consensus 1125 ~~~~~~lv~eL-~npN~~VR~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~l~ 1203 (3550)
T KOG0889|consen 1125 MNVFSPLVLEL-FNPNSDVREFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLSLG 1203 (3550)
T ss_pred HHHHHHHHHHH-cCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHHHcC
Confidence 34677777777 677889999999999988877522211111111 111112222222233333333333333221
Q ss_pred h-------HHHHHHHHh---------CcHHHHHHhhCCC----CchhHHHHHHHHhHhhcCCchhhH--HHhhcCchHHH
Q 009636 275 N-------DKIQAVIEA---------GVFPRLAEFLMHP----SPSVLIPALRTVGNIVTGDDMQTQ--CVIEYQALPCL 332 (530)
Q Consensus 275 ~-------~~~~~~~~~---------~~l~~L~~lL~~~----~~~~~~~al~~L~nl~~~~~~~~~--~~~~~~~l~~L 332 (530)
+ +........ ..+- +.+..... ....+..++..++......+.... .-...+++..+
T Consensus 1204 p~~f~~~~~l~~l~~~~~~La~~~~~~~~~-i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~ 1282 (3550)
T KOG0889|consen 1204 PCLFDFTEELYRLKRFLIALADAEEDELAT-IQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVF 1282 (3550)
T ss_pred CcccCchHHHHHHHHHHHHhhhhhhhhhhh-hhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHH
Confidence 1 111100000 0000 22222221 123466677777666554443221 22345788888
Q ss_pred HHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHH
Q 009636 333 LNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALL 379 (530)
Q Consensus 333 ~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll 379 (530)
.+.+... .+++...+..++......+...-...++.+.=|.|..+-
T Consensus 1283 fk~l~~~-~~Ei~~~~~~~l~~v~~~~~~~~ke~lq~~lrplL~~l~ 1328 (3550)
T KOG0889|consen 1283 FKSLYKR-SSELIEVALEGLRKVLAQDVKLPKELLQSHLRPLLMNLS 1328 (3550)
T ss_pred HHHHcCC-hHHHHHHHHHHHHhhhhccccccHHHHHhhHHHHHHhhh
Confidence 8888888 888888888888888776555444555544444444443
No 395
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=40.34 E-value=39 Score=21.40 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=14.1
Q ss_pred cCCCCCchHHhhh-hhhHHHHHHH
Q 009636 16 YKVAVDADEGRRR-REDNMVEIRK 38 (530)
Q Consensus 16 ~k~~~~~~e~~~~-r~~~~~~lRk 38 (530)
+-+..|++|+++| |++.-..+|+
T Consensus 7 l~pk~DPeE~k~kmR~dvissvrn 30 (51)
T PF15178_consen 7 LGPKMDPEEMKRKMREDVISSVRN 30 (51)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3346788888764 5555555553
No 396
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=39.82 E-value=4.8e+02 Score=27.59 Aligned_cols=408 Identities=13% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHHHHHhhc-----CCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCh
Q 009636 75 LPVMVAGVW-----SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTS 149 (530)
Q Consensus 75 l~~l~~~l~-----s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~ 149 (530)
+|.+..+.. +.+++.....+..+...+.. -+.+.+.+.+++..+..-+.+.. +.+..++.||+.++.-..
T Consensus 190 F~qIF~lc~qiLE~~~~~SLi~ATLesllrfl~w---iPl~yIfeTnIieLv~~~f~s~p--d~r~~tl~CLtEi~~L~~ 264 (1053)
T COG5101 190 FPQIFGLCKQILEYSRDESLIEATLESLLRFLEW---IPLDYIFETNIIELVLEHFNSMP--DTRVATLSCLTEIVDLGR 264 (1053)
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhh---CchhHHHHHHHHHHHHHHhccCC--chhHHHHHHHHHHHhhcc
Q ss_pred hhHHHHHhCCChHHHHHhhCC----CCHHHHHHHHHHHHhhhCCCchhhhhHhh--cCChHHHHHhhcCCCchhHHHHHH
Q 009636 150 EHTKVVIDHGAVPIFVKLLYS----PSDDVREQAVWALGNIAGDSPRCRDLVLS--QGGLVPLLAQLNGQPKLSMLRNAT 223 (530)
Q Consensus 150 ~~~~~~~~~g~i~~L~~ll~~----~~~~i~~~a~~~L~nl~~~~~~~~~~i~~--~~~i~~Ll~ll~~~~~~~~~~~a~ 223 (530)
....--.....+....+.... ......+..-.+-++.......+-..+.. ......-+.+|......+...++.
T Consensus 265 ~pq~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~~~~~neq~Fvq~LA~fL~s~~~~~~~lLE~~e~~e~llnah 344 (1053)
T COG5101 265 HPQENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEVYGGMDKNEQIFVQKLAQFLSSLYEVYISLLEAREMAENLLNAH 344 (1053)
T ss_pred CcccchhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHcccChhHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHH
Q ss_pred HHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHH-----------HHHHHHhCcHHHHHH
Q 009636 224 WTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDK-----------IQAVIEAGVFPRLAE 292 (530)
Q Consensus 224 ~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~-----------~~~~~~~~~l~~L~~ 292 (530)
.-|.++++-.....+...-..-..++.=|.+.=..+-..-..-+.+++.++... .+.-.-.|++..|.-
T Consensus 345 ~YLiqiSrInereiFkt~leyW~klVadLy~E~q~lp~tem~Pli~ls~~s~~istnpn~~~~~pLrkhiY~~ilsqLrl 424 (1053)
T COG5101 345 GYLIQISRINEREIFKTALEYWNKLVADLYSEFQRLPATEMSPLIQLSVGSQAISTNPNQDSTKPLRKHIYIGILSQLRL 424 (1053)
T ss_pred HHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCcchhccccchhccCCcchhcccchHHHHHHHHHHHHHH
Q ss_pred hhCCCCc--------------------------hhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCC-chhHH
Q 009636 293 FLMHPSP--------------------------SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKSIK 345 (530)
Q Consensus 293 lL~~~~~--------------------------~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~ 345 (530)
.+-..-+ .....--.+|-.++.-....++..+ +..+...+.... +-.-.
T Consensus 425 vlienMvrPEEVliVendegEivRefvketDtI~lYksmRevLvyLthL~v~Dte~~m----i~Klarq~dg~EWsw~nl 500 (1053)
T COG5101 425 VLIENMVRPEEVLIVENDEGEIVREFVKETDTIELYKSMREVLVYLTHLIVDDTEKYM----IGKLARQLDGKEWSWNNL 500 (1053)
T ss_pred HHHHcCCCcceEEEEECCCcHHHHHHhccccHhHHHHHHhhHHHHHhhhhhhhHHHHH----HHHHHHHhcCCccchhhH
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHc--CChHHHHhccC
Q 009636 346 KEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQ--GCIKPLCDLLV 423 (530)
Q Consensus 346 ~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~--~~i~~L~~lL~ 423 (530)
..-||+++.++..-.+....-+--++++.|+.+..-...+--+.+...=.-...+..+...+.-+.- .++..|..++.
T Consensus 501 NtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMyvvGQYpRFLkahw~FLkTVv~KLFEFMh 580 (1053)
T COG5101 501 NTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMYVVGQYPRFLKAHWSFLKTVVKKLFEFMH 580 (1053)
T ss_pred hHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecceeeeeccchHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred CCChHHHHHHHHHHHHHHHhhhhhhhcCCCCc-hhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHH
Q 009636 424 CPDPRIVTVCLEGLENILKVGEAEKNLGNTDV-NVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLET 492 (530)
Q Consensus 424 ~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~ 492 (530)
..+..++..|++.+.++...++..-...+.+. ++|...+. -+.-..-..|+-.+-..+|+.+--+|..
T Consensus 581 E~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Ii-rnl~ktT~dL~pqQ~htfYeAcg~vIse 649 (1053)
T COG5101 581 EDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYII-RNLPKTTGDLEPQQKHTFYEACGMVISE 649 (1053)
T ss_pred hhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHH-HhhhhhcccCChHHHhHHHHHHhHHHhc
No 397
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=39.78 E-value=3e+02 Score=32.75 Aligned_cols=141 Identities=11% Similarity=0.056 Sum_probs=77.5
Q ss_pred HHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCc
Q 009636 249 AHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQA 328 (530)
Q Consensus 249 ~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~ 328 (530)
-.++.+.++.++.-+......+-...+. .....++..|+..+.+++..-...|+.+|..|+..++..... -+..
T Consensus 441 ~~Ll~S~e~~v~~FG~~~Y~~lF~~fds----~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~~l~~--fa~~ 514 (1426)
T PF14631_consen 441 QSLLRSKEPSVREFGSHLYKYLFKEFDS----YCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPSELQP--FATF 514 (1426)
T ss_dssp HHHHTSSSHHHHHHHHHHHHHHHHSS-H----HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHHHH--THHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHhhccc----hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHHHHHH--HHHH
Confidence 3456788888888877777776655443 223357788888887777777789999999999755433211 1223
Q ss_pred hHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHh
Q 009636 329 LPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNA 397 (530)
Q Consensus 329 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 397 (530)
+..++..+..= +..--+....+++.++....... .-++..+.-.+-+.+.+.+++.++..+.+...+
T Consensus 515 l~giLD~l~~L-s~~qiR~lf~il~~La~~~~~~~-s~i~del~ivIRKQLss~~~~~K~~GIIGav~~ 581 (1426)
T PF14631_consen 515 LKGILDYLDNL-SLQQIRKLFDILCTLAFSDSSSS-SSIQDELHIVIRKQLSSSNPKYKRIGIIGAVMM 581 (1426)
T ss_dssp HHGGGGGGGG---HHHHHHHHHHHHHHHHHHSS----HHHHHHHHHHHHHHT-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHHhcCCcccc-hhhHHHHHHHHHHhhcCCcHHHHHHhHHHHHHH
Confidence 33444444433 33333445777777765221111 122233444455567777777776655444433
No 398
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.52 E-value=45 Score=31.91 Aligned_cols=64 Identities=8% Similarity=0.023 Sum_probs=53.4
Q ss_pred HHHHHHHHhcCChhhHHHHHhCCChHHHHHhh--CCCCHHHHHHHHHHHHhhhCCCchhhhhHhhc
Q 009636 137 AAWALTNIASGTSEHTKVVIDHGAVPIFVKLL--YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQ 200 (530)
Q Consensus 137 a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll--~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~ 200 (530)
..+.+++++...++..+.+.+.|+++.++.-. ++.+|-+++..+.++.+|..++.+.++.+...
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~km 441 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGKM 441 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhcC
Confidence 56789999998999999999999999887754 44678999999999999998888777766543
No 399
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=39.40 E-value=4.5e+02 Score=27.17 Aligned_cols=140 Identities=12% Similarity=0.088 Sum_probs=82.5
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcC-------CCchhHHHHHHHHhhhhccCCCC
Q 009636 163 IFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG-------QPKLSMLRNATWTLSNFCRGKPQ 235 (530)
Q Consensus 163 ~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~-------~~~~~~~~~a~~~L~~L~~~~~~ 235 (530)
.+.+.+-+.++..+..|+..|.. |. .... .++.++..+.. ..+.....+++...+.|..+...
T Consensus 211 ~It~a~~g~~~~~r~eAL~sL~T---Ds-GL~~------LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i 280 (576)
T KOG2549|consen 211 EITEACTGSDEPLRQEALQSLET---DS-GLQQ------LLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNI 280 (576)
T ss_pred HHHHHHhcCCHHHHHHHHHhhcc---Cc-cHHH------HHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCcc
Confidence 34444445666677766666542 22 2221 35555555532 24667788888888888888655
Q ss_pred CChhhhhchHHHHHHhhcCC----------ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC--CchhHH
Q 009636 236 PPFDQVSPALPALAHLIHSN----------DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP--SPSVLI 303 (530)
Q Consensus 236 ~~~~~~~~~l~~L~~ll~~~----------d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~~~~ 303 (530)
.-......++|.++.++-+. ...++.-++..+..++....+.... +...++..+.+.+.+. .+....
T Consensus 281 ~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~~st~Y 359 (576)
T KOG2549|consen 281 FLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKPLSTHY 359 (576)
T ss_pred chhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCCchhhh
Confidence 55566778888887776421 2346666777777777655443332 4445666666666554 344455
Q ss_pred HHHHHHhHhh
Q 009636 304 PALRTVGNIV 313 (530)
Q Consensus 304 ~al~~L~nl~ 313 (530)
-++..|..+.
T Consensus 360 Gai~gL~~lg 369 (576)
T KOG2549|consen 360 GAIAGLSELG 369 (576)
T ss_pred hHHHHHHHhh
Confidence 5555555544
No 400
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=38.37 E-value=62 Score=18.06 Aligned_cols=13 Identities=15% Similarity=0.532 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHH
Q 009636 343 SIKKEACWTVSNI 355 (530)
Q Consensus 343 ~v~~~a~~~L~nl 355 (530)
.+|..|+++|+++
T Consensus 2 ~vR~~aa~aLg~~ 14 (30)
T smart00567 2 LVRHEAAFALGQL 14 (30)
T ss_pred HHHHHHHHHHHHc
Confidence 5789999999998
No 401
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=37.69 E-value=5.7e+02 Score=27.80 Aligned_cols=153 Identities=10% Similarity=0.076 Sum_probs=75.2
Q ss_pred hhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHH
Q 009636 300 SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALL 379 (530)
Q Consensus 300 ~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll 379 (530)
.....+++|+-.+....-.....+-....+-.+...+... .+.....++.+++.+|.-..
T Consensus 207 k~~~eiIrClka~mNn~~Gl~~vL~~e~~lllla~aldpr-~pnmm~dvvkllsalciV~e------------------- 266 (1102)
T KOG1924|consen 207 KNLQEIIRCLKAFMNNKFGLVLVLRRERSLLLLARALDPR-EPNMMTDVVKLLSALCIVGE------------------- 266 (1102)
T ss_pred HHHHHHHHHHHHHhccccceeeeecCCccHHHHHHhcCcc-CccHHHHHHHHHHHHheeeh-------------------
Confidence 3456677777666542221111111223355566666666 77777777777777765221
Q ss_pred hcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCC-ChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhh
Q 009636 380 ENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP-DPRIVTVCLEGLENILKVGEAEKNLGNTDVNVF 458 (530)
Q Consensus 380 ~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~-~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~ 458 (530)
.......+.++..++.....+. ..+|++.|... +..+...+...|..+........- --.+
T Consensus 267 ----e~~~ekvl~aiT~~ae~~~veR---------F~piv~gl~~~e~~~l~vacmq~INal~t~p~dldf-----Rlhl 328 (1102)
T KOG1924|consen 267 ----ENGLEKVLEAITTIAEAKPVER---------FRPIVEGLDFLEKQQLQVACMQFINALVTSPSDLDF-----RLHL 328 (1102)
T ss_pred ----hhHHHHHHHHHHHHHhhcchhh---------hhhHHHHHhccchHHHHHHHHHHHHHhcCCHHHhhH-----HHHH
Confidence 2333444455555554322222 33444555444 344444444433333322221110 0113
Q ss_pred HHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHH
Q 009636 459 TQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLE 491 (530)
Q Consensus 459 ~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~ 491 (530)
+..+...|..+.|.++....|+. ...+.++++
T Consensus 329 R~E~mr~gL~~~l~~l~~i~n~~-ldvqlkvfd 360 (1102)
T KOG1924|consen 329 RSEFMRDGLHKYLPDLTEINNDI-LDVQLKVFD 360 (1102)
T ss_pred HHHHHHHhHHHHHHHhhhhccHH-HHHHHHHHh
Confidence 55566788888888887664444 344444443
No 402
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=37.43 E-value=6.6e+02 Score=28.52 Aligned_cols=135 Identities=11% Similarity=0.126 Sum_probs=86.2
Q ss_pred CCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCC--HHHHHHHHHhCcH
Q 009636 295 MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN--REQIQAVIEANII 372 (530)
Q Consensus 295 ~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~--~~~~~~l~~~~~i 372 (530)
.+-.+.+|..++..||-.+...+. .+++...+..+-=.|++. ...||..+..+|-.|...+ ......+ -..+=
T Consensus 297 RDV~~~IRaiCiqeLgiWi~~yP~---~Fl~dsYLKYiGWtLsDk-~~~VRl~~lkaL~~L~e~~~~~~~L~lF-tsRFK 371 (1048)
T KOG2011|consen 297 RDVDPDIRAICIQELGIWIKSYPE---IFLSDSYLKYIGWTLSDK-NGTVRLRCLKALIKLYEKDEDKDKLELF-TSRFK 371 (1048)
T ss_pred ccCchHHHHHHHHHHHHHHHhccH---HHhcchHHHHhcceeecC-ccHHHHHHHHHHHHHHhccccchHHHHH-HHHHH
Confidence 345788999999999988876653 456666666666666666 8899999999999997742 2222222 23455
Q ss_pred HHHHHHH-hcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHH
Q 009636 373 GPLVALL-ENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENIL 441 (530)
Q Consensus 373 ~~L~~ll-~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll 441 (530)
..++++. .+.+..|+..++..+.-+...+ ++...-+..+..++-+.++.+...+...++.-+
T Consensus 372 ~RIVeMadrd~~~~Vrav~L~~~~~~~~~g-------~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~k~ 434 (1048)
T KOG2011|consen 372 DRIVEMADRDRNVSVRAVGLVLCLLLSSSG-------LLSDKDILIVYSLIYDSNRRVAVAAGEFLYKKL 434 (1048)
T ss_pred HHHHHHHhhhcchhHHHHHHHHHHHHhccc-------ccChhHHHHHHHHHhccCcchHHHHHHHHHHHh
Confidence 6677776 3335566665555444443332 122334566677777788887777766665443
No 403
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=36.66 E-value=2.6e+02 Score=23.67 Aligned_cols=80 Identities=13% Similarity=0.116 Sum_probs=51.6
Q ss_pred HHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHH-hhcCCC-chhHHHHHHHHHHHHh
Q 009636 279 QAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLN-LLSGNY-KKSIKKEACWTVSNIT 356 (530)
Q Consensus 279 ~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~-lL~~~~-~~~v~~~a~~~L~nl~ 356 (530)
..+++..+.+.+.+.+.+.+..+...+++++..+...-......-++ -+++.++. ++.++. ....|..+..++..++
T Consensus 67 ~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele-~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~ 145 (168)
T PF12783_consen 67 INLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELE-VFLSHIILRILESDNSSLWQKELALEILRELC 145 (168)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHccCCCcHHHHHHHHHHHHHHH
Confidence 34566678888888888888889999999999998533222111111 23444444 565542 2356777888888888
Q ss_pred cCC
Q 009636 357 AGN 359 (530)
Q Consensus 357 ~~~ 359 (530)
...
T Consensus 146 ~~p 148 (168)
T PF12783_consen 146 KDP 148 (168)
T ss_pred hCh
Confidence 653
No 404
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=36.37 E-value=2.2e+02 Score=22.59 Aligned_cols=68 Identities=25% Similarity=0.286 Sum_probs=47.3
Q ss_pred ChHHHHHhhC-CCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhH-HHHHHHHhhhhccCC
Q 009636 160 AVPIFVKLLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSM-LRNATWTLSNFCRGK 233 (530)
Q Consensus 160 ~i~~L~~ll~-~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~-~~~a~~~L~~L~~~~ 233 (530)
++|.+...+. +..++.+-.+..+++.++...+ ..+. .+..+++.+........ .+.++.++..++...
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~-L~~~-----~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP-LSDE-----VLNALMESILKNWTQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC-CcHH-----HHHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence 4688888888 6788999999999999986655 2222 45555555544433333 478888899888665
No 405
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=36.24 E-value=58 Score=30.91 Aligned_cols=107 Identities=20% Similarity=0.203 Sum_probs=68.4
Q ss_pred HhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCC-------------HHHHHHHHHcCChHHHHhccCC----------
Q 009636 368 EANIIGPLVALLENAEFDIKKEAAWAISNATSGGT-------------HEQIKFLVIQGCIKPLCDLLVC---------- 424 (530)
Q Consensus 368 ~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~-------------~~~~~~l~~~~~i~~L~~lL~~---------- 424 (530)
+..++..+++-|...+...|..|+.+|..++.|.- ...+..|.+.|+++.|..+|..
T Consensus 58 ~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~~~~~~~~~~~ 137 (293)
T PF07923_consen 58 RKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKMFIENSWSCDD 137 (293)
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcccccc
Confidence 34567788888998899999999999999998751 2345566788999999888841
Q ss_pred ----------CChHHHHHHHHHHHHHHHhhhhhhhcCCC--CchhhHHHhhhhccHHHHHHH
Q 009636 425 ----------PDPRIVTVCLEGLENILKVGEAEKNLGNT--DVNVFTQMIDDAEGLEKIESL 474 (530)
Q Consensus 425 ----------~~~~~~~~al~~l~~ll~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~l~~l 474 (530)
.+......++.+++.++............ ....+...+.+.+.+..|..+
T Consensus 138 ~~~~~~~~~~~~~~el~~~LTilY~~vev~r~~~~~~~~~~~~~~~~~~L~~p~ll~~L~~~ 199 (293)
T PF07923_consen 138 QDSNLPAVSLADSTELRVLLTILYFMVEVARRDRDSPEWMAIVREFIMELEEPNLLVFLFKM 199 (293)
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHhcCCcHHHHHHHH
Confidence 01135556777888777665443100000 123344445455555555544
No 406
>KOG1791 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.83 E-value=3.7e+02 Score=31.65 Aligned_cols=198 Identities=14% Similarity=0.051 Sum_probs=102.5
Q ss_pred HHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH-HHHHhCCChHHHHHhhCC----CCHHHHHHHHHHHHh
Q 009636 111 EVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT-KVVIDHGAVPIFVKLLYS----PSDDVREQAVWALGN 185 (530)
Q Consensus 111 ~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~-~~~~~~g~i~~L~~ll~~----~~~~i~~~a~~~L~n 185 (530)
.+++.|..-.++.-+++.+ +.++..|.|++...... -+.. ......-.+-.++.+.+. +++++-..+.-.+.
T Consensus 1434 ~fvs~~lLa~~F~~lSS~D-~~mr~la~~~lqi~~dH-Le~l~ek~~a~~~ll~L~~l~qng~~e~~~Rl~si~alF~A- 1510 (1758)
T KOG1791|consen 1434 IFVSRGLLALLFKGLSSDD-PSMRKLAYWVLQIFLDH-LENLLEKKQAQFNLLYLSCLAQNGSRESDPRLISICALFIA- 1510 (1758)
T ss_pred hhhhcccHHHHhhhhccCC-HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHccCcCCCcchhhHHHHHHH-
Confidence 6778898888888888888 99999998887766552 2221 222221223333333322 22222221111111
Q ss_pred hhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChh---HHHH
Q 009636 186 IAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDE---VLTD 262 (530)
Q Consensus 186 l~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~---v~~~ 262 (530)
....++ ..+...+.......+.. .....-..+|.+-.++.+...+ .+..
T Consensus 1511 -------------------~~~~il-l~Ps~~ly~~In~~L~~--------s~~vdlq~iP~F~~ffySs~~e~~t~R~W 1562 (1758)
T KOG1791|consen 1511 -------------------FFSDIL-LVPSEGLYFPINGLLLS--------SKIVDLQGIPIFHRFFYSSVFEHHTEREW 1562 (1758)
T ss_pred -------------------HHHHHH-cCCccccchhHHHHHHh--------hhhcccCCCccHHHHHHhccccccchhhh
Confidence 111111 11111111111111110 0011123344555565554332 4444
Q ss_pred HHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC--CchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCC
Q 009636 263 ACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP--SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY 340 (530)
Q Consensus 263 a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~ 340 (530)
.+..+......+++ .+.....+....++.+..+. +...+.-.+.++++-+.........+-..|+..++..++.+..
T Consensus 1563 vl~LV~~glks~~D-~ql~~~~~~~~~~lsf~sS~l~~~~S~~LIL~~L~~~Vk~p~~a~~mle~~Gl~sWi~niI~s~~ 1641 (1758)
T KOG1791|consen 1563 VLELVSKGLKSCPD-YQLLQIRNIFETLLSFYSSPLASEESKRLILATLQKGVKFPFYAYEMLEVPGLFSWILNIIPSSF 1641 (1758)
T ss_pred hHHHHHHHhcCchh-hhHHhhcCcceEeehhhcchhHHHHHHHHHHHHHHhcCCCcHHHHHHHhcccHHHHHHHhccccc
Confidence 55555554444444 45566667777777777663 3444556777777777655555555557899999999998874
No 407
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.09 E-value=1.5e+02 Score=32.63 Aligned_cols=95 Identities=14% Similarity=0.109 Sum_probs=67.9
Q ss_pred CcHHHHHHhhCCCCchhHHHHHHHHhHhhc---CCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH
Q 009636 285 GVFPRLAEFLMHPSPSVLIPALRTVGNIVT---GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE 361 (530)
Q Consensus 285 ~~l~~L~~lL~~~~~~~~~~al~~L~nl~~---~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~ 361 (530)
+++.+...+|++.+-.+|..|+.++.-... ..+..- ..+-+...+.++..+... ++-+...|+.+|-+++..+.+
T Consensus 803 kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~L-lPlvhq~W~~vie~~~~k-~~L~v~~a~~~i~~m~~~sgD 880 (1014)
T KOG4524|consen 803 KILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLL-LPLVHQTWPSVIECLLCK-DPLIVQRAFSCIEQMGKYSGD 880 (1014)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhH-hHHHHhhhhHHHHHHhcC-chHHHHHHHHHHHHHHHHhhh
Confidence 677888888999999999999988865432 122111 122356788888999888 999999999999999986666
Q ss_pred HHHHHHHhCcHHHHHHHHhc
Q 009636 362 QIQAVIEANIIGPLVALLEN 381 (530)
Q Consensus 362 ~~~~l~~~~~i~~L~~ll~~ 381 (530)
.+..=+-..++|.+-.++.+
T Consensus 881 Fv~sR~l~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 881 FVASRFLEDVLPWLKHLCQD 900 (1014)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55544444577776665543
No 408
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=34.70 E-value=3.8e+02 Score=26.62 Aligned_cols=218 Identities=14% Similarity=0.066 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHhcCC--hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHH
Q 009636 130 YPQLQFEAAWALTNIASGT--SEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLL 207 (530)
Q Consensus 130 ~~~i~~~a~~~L~~l~~~~--~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll 207 (530)
+|.++..=-..|.-+.+-+ +...+..++..++-.|+.+..+.++.-++..-.+|.++.+.-..+|..+... .-..++
T Consensus 146 wphLqlvye~~Lrf~~sp~~d~~vaK~yid~~FvlkLLdLFdSEDpRERe~LKT~LhrIygKfl~~r~firk~-iNNif~ 224 (457)
T KOG2085|consen 146 WPHLQLVYEFLLRFLESPDFDPSVAKKYIDQKFVLKLLDLFDSEDPREREFLKTILHRIYGKFLVHRPFIRKS-INNIFL 224 (457)
T ss_pred chHHHHHHHHHHHHHhCcccCHHHHHHHhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhHHHHHHh-hcchhh
Q ss_pred HhhcCCCchhHHHHHHHHhhhhccCC-CCCChhhhhchHHHHHHhhcC-CChhHHHHHHHHHHHhccCChHHHHHHHHhC
Q 009636 208 AQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAG 285 (530)
Q Consensus 208 ~ll~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~l~~L~~ll~~-~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~ 285 (530)
+.+.....-.-....+.+|+.+..+. -.......--.+..|+.+=.. .-.--......|+..+.+.+..... -
T Consensus 225 ~FIyEte~hnGIaELLEIlgSiIngfAlPlKEEhkiFL~rvLipLhk~k~l~~yh~QLaYcivQfveKd~kl~~-----~ 299 (457)
T KOG2085|consen 225 RFIYETERHNGIAELLEILGSIINGFALPLKEEHKLFLVRVLIPLHKPKSLSLYHKQLAYCIVQFVEKDPKLTE-----T 299 (457)
T ss_pred hhcccccccCCHHHHHHHHHHhcCcccCcchhHHHHHHHHhhhccccCCCccccccccceeeeeeeccCccccH-----H
Q ss_pred cHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 009636 286 VFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN 354 (530)
Q Consensus 286 ~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n 354 (530)
++..|++.--..+..-...-+.-+.-+.......--.-+..-+...+...++++ +-.|.+.|+....|
T Consensus 300 VIrglLK~WP~tnS~KEVmFL~ElEEILe~iep~eFqk~~~PLf~qia~c~sS~-HFQVAEraL~~wnN 367 (457)
T KOG2085|consen 300 VIRGLLKYWPKTNSSKEVMFLNELEEILEVIEPSEFQKIMVPLFRQIARCVSSP-HFQVAERALYLWNN 367 (457)
T ss_pred HHHHHHHhcCCCCCcceeeeHhhHHHHHHhcCHHHHHHHhHHHHHHHHHHcCCh-hHHHHHHHHHHHhh
No 409
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=32.61 E-value=2.4e+02 Score=21.94 Aligned_cols=80 Identities=16% Similarity=0.110 Sum_probs=53.1
Q ss_pred CchHHHHHhhcC---CCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC--chhHHHHHHHHHHHhhcCC
Q 009636 327 QALPCLLNLLSG---NYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATSGG 401 (530)
Q Consensus 327 ~~l~~L~~lL~~---~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~nl~~~~ 401 (530)
|++..+-..+.+ ..+...|+.+...++.+..-....+. .+.|.++..|.+. .++++..|+.+...+...-
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~-----~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L 85 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHIS-----SARPQIMACLQSALEIPELREEALSCWNCFIKTL 85 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHC
Confidence 556666666665 22567788899999888763333332 2455566666543 4589999999999888876
Q ss_pred CHHHHHHHHH
Q 009636 402 THEQIKFLVI 411 (530)
Q Consensus 402 ~~~~~~~l~~ 411 (530)
+++....+++
T Consensus 86 ~~~~l~~ll~ 95 (107)
T PF08064_consen 86 DEEDLGPLLD 95 (107)
T ss_pred CHHHHHHHHH
Confidence 6666666544
No 410
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=32.32 E-value=3.8e+02 Score=24.25 Aligned_cols=129 Identities=15% Similarity=0.183 Sum_probs=75.8
Q ss_pred hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCc------------------hhHHHHHHHHhHhhcCCch
Q 009636 257 DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSP------------------SVLIPALRTVGNIVTGDDM 318 (530)
Q Consensus 257 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~------------------~~~~~al~~L~nl~~~~~~ 318 (530)
.......|..+..+...++. ...+...++++.+.+.|..-++ .....=...||.++. ++.
T Consensus 78 ~~y~~vGc~L~~~Ll~~~eG-~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~-~~~ 155 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLSSPEG-IKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSS-TPN 155 (226)
T ss_pred hHHHHHHHHHHHHHHcCcHH-HHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhC-Chh
Confidence 34445556666666665443 4445566777777776644211 122223466777765 445
Q ss_pred hhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhh
Q 009636 319 QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNAT 398 (530)
Q Consensus 319 ~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~ 398 (530)
..+.+-+.++...+..+........+.+ .+|+++=-+.+...+. .|-..|..++..+|..|...|..+.
T Consensus 156 Gl~lLe~~~if~~l~~i~~~~~~~~l~k---lil~~LDY~~~~~~R~--------iLsKaLt~~s~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 156 GLKLLERWNIFTMLYHIFSLSSRDDLLK---LILSSLDYSVDGHPRI--------ILSKALTSGSESIRLYATKHLRVLL 224 (226)
T ss_pred HHHHHHHCCHHHHHHHHHccCchHHHHH---HHHhhCCCCCccHHHH--------HHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 5556667899999999998762332222 3555553332222222 3345677888899999988887665
No 411
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=30.98 E-value=2.7e+02 Score=22.02 Aligned_cols=101 Identities=18% Similarity=0.105 Sum_probs=61.0
Q ss_pred cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhc
Q 009636 371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNL 450 (530)
Q Consensus 371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~ 450 (530)
+++.|+..|.+.+++|...|..+|...+... ...+.++... +.+..+-+ ..--.+..++.....
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~--~~le~~v~~~--p~l~~L~~--------~g~~Ll~~~lS~~~G---- 72 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK--EYLEYLVSLR--PSLDHLGD--------IGSPLLLRFLSTPSG---- 72 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch--hhHHHHHHcC--cHHHHHHH--------cCHHHHHHHHcchHH----
Confidence 5778899999999999999999999998853 5556655432 12211111 111223333333222
Q ss_pred CCCCchhhHHHhhhhccHHH-HHHHhcCCCHHHHHHHHHHHHHhCC
Q 009636 451 GNTDVNVFTQMIDDAEGLEK-IESLQTHDNAEIYEKSVKLLETYWL 495 (530)
Q Consensus 451 ~~~~~~~~~~~l~~~~~~~~-l~~l~~~~~~~v~~~a~~il~~~~~ 495 (530)
...+.+.|.++. +.......|.+=.......+...|.
T Consensus 73 --------f~~L~~~~~v~~El~~W~~~~N~~YV~~vE~~l~~~~~ 110 (115)
T PF14663_consen 73 --------FRYLNEIGYVEKELDKWFESFNKEYVKLVEEFLSEALT 110 (115)
T ss_pred --------HHHhcchhHHHHHHHHHHHcccHHHHHHHHHHHHHHHh
Confidence 334555555554 5566778888766666666666554
No 412
>TIGR01385 TFSII transcription elongation factor S-II. This model represents eukaryotic transcription elongation factor S-II. This protein allows stalled RNA transcription complexes to perform a cleavage of the nascent RNA and restart at the newly generated 3-prime end.
Probab=30.95 E-value=1.2e+02 Score=28.79 Aligned_cols=37 Identities=16% Similarity=0.347 Sum_probs=32.5
Q ss_pred HHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009636 459 TQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL 495 (530)
Q Consensus 459 ~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~ 495 (530)
..+|.+..+-..+..|..|++++|...|..+|..|-.
T Consensus 37 ~~lL~~T~IG~~Vn~lrkh~~~~I~~lAk~li~~WK~ 73 (299)
T TIGR01385 37 EELLQETKVGVKVNKLRKHPNEDISKLAKKIIKSWKK 73 (299)
T ss_pred HHHHhhCchhHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 5677888878889999999999999999999998854
No 413
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=30.86 E-value=6.1e+02 Score=26.15 Aligned_cols=71 Identities=18% Similarity=0.119 Sum_probs=43.6
Q ss_pred HHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHH
Q 009636 362 QIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLE 438 (530)
Q Consensus 362 ~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~ 438 (530)
++..++-..++-.+.+-....|......+..++.+|... .....++ +++.|.-+|..+..+-+..|+..+.
T Consensus 230 ~IgElLlkrLilqf~r~f~RnDk~~c~~~~kfiahLinq---~VahEIv---~Leil~lLLe~PTddSvevaI~flk 300 (739)
T KOG2140|consen 230 QIGELLLKRLILQFKRSFRRNDKVSCLNASKFIAHLINQ---QVAHEIV---ALEILTLLLERPTDDSVEVAIAFLK 300 (739)
T ss_pred hHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH---HHHHHHH---HHHHHHHHhcCCCCchHHHHHHHHH
Confidence 333444344555666667777888888888888888763 2222222 4677777887765555555554443
No 414
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.43 E-value=9.6e+02 Score=28.28 Aligned_cols=200 Identities=13% Similarity=0.165 Sum_probs=0.0
Q ss_pred HHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 009636 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAV 366 (530)
Q Consensus 287 l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 366 (530)
+..+++-|...++..+..|+..++.+....+......+-........++..+. +..||...-.++..+...-...+...
T Consensus 43 l~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~-~~~VR~~t~~v~s~l~t~lkk~lsp~ 121 (1312)
T KOG0803|consen 43 LDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDE-DRTVRLLTHDVFSKLLTKLKKKLSPF 121 (1312)
T ss_pred HHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHhhHH
Q ss_pred HHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcc-------------------CCCCh
Q 009636 367 IEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLL-------------------VCPDP 427 (530)
Q Consensus 367 ~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL-------------------~~~~~ 427 (530)
++ .+++...-.-.+.+..|-..|...+..........+.-.+.+..+.....+.+ +..-+
T Consensus 122 LK-~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k~~ 200 (1312)
T KOG0803|consen 122 LK-SLIPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESKYQ 200 (1312)
T ss_pred HH-hhhhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHhhH
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009636 428 RIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETY 493 (530)
Q Consensus 428 ~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~ 493 (530)
.+...++-++..++...-.... .......+...-.-+.+=.+..++.+.|...+.+++-.+
T Consensus 201 Rvi~ssLl~l~~l~~~~~~~~e-----l~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l 261 (1312)
T KOG0803|consen 201 RVISSSLLLLLKLFKITGDEEE-----LHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSL 261 (1312)
T ss_pred HHHHHHHHHHHHHHHHhCchHh-----hhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHH
No 415
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=28.36 E-value=5.3e+02 Score=24.60 Aligned_cols=83 Identities=14% Similarity=0.184 Sum_probs=62.3
Q ss_pred hCcHHHHHHhhCCC--CchhHHHHHHHHhHhhcCCch--hhHHHhhcCchHHHHHhhcCCC--chhHHHHHHHHHHHHhc
Q 009636 284 AGVFPRLAEFLMHP--SPSVLIPALRTVGNIVTGDDM--QTQCVIEYQALPCLLNLLSGNY--KKSIKKEACWTVSNITA 357 (530)
Q Consensus 284 ~~~l~~L~~lL~~~--~~~~~~~al~~L~nl~~~~~~--~~~~~~~~~~l~~L~~lL~~~~--~~~v~~~a~~~L~nl~~ 357 (530)
.|++..+++.+... +...+-....++-...++.+. ....+.+.|+++.++..+-++. +..+...+.-.||.+..
T Consensus 94 ~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~~FDLLGELiK 173 (303)
T PF12463_consen 94 KGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQSNFDLLGELIK 173 (303)
T ss_pred ccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHHHHHHHHHHHC
Confidence 47888888887654 456677788888888888766 2335668899999998887652 24578888899999999
Q ss_pred CCHHHHHHH
Q 009636 358 GNREQIQAV 366 (530)
Q Consensus 358 ~~~~~~~~l 366 (530)
++......+
T Consensus 174 ~n~~~f~~l 182 (303)
T PF12463_consen 174 FNRDAFQRL 182 (303)
T ss_pred CCHHHHHHH
Confidence 887665544
No 416
>PF10257 RAI16-like: Retinoic acid induced 16-like protein; InterPro: IPR019384 This entry represents a conserved sequence region found in a family of proteins described as retinoic acid-induced protein 16-like proteins. These proteins are conserved from worms to humans, but their function is not known.
Probab=27.49 E-value=5.8e+02 Score=24.96 Aligned_cols=121 Identities=17% Similarity=0.222 Sum_probs=80.3
Q ss_pred HHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHH-HhcC-----chhHHHHHHHHH
Q 009636 321 QCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVAL-LENA-----EFDIKKEAAWAI 394 (530)
Q Consensus 321 ~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~l-l~~~-----~~~v~~~a~~aL 394 (530)
+++++.+++..|..+-..+..+.+|.++.+.+.++....... .+....+..++.++ +... ...+..+-+..+
T Consensus 3 Eyll~~~Il~~L~~la~~d~p~g~r~~~l~f~~~Ll~~~~~p--lL~h~~v~~pl~~L~l~~c~~~~~~~~~E~~lV~lL 80 (353)
T PF10257_consen 3 EYLLQHQILETLCTLAKADYPPGMRQEVLKFFSRLLSQSQQP--LLPHRSVHRPLQRLLLRSCGESRSASPTEKELVELL 80 (353)
T ss_pred HHHHHhChHHHHHHHHcccCChHHHHHHHHHHHHHHHhcccc--cccchhhhhhHHHHHHHHhCCCCCCchHHHHHHHHH
Confidence 467788999999999988767899999999999998743222 33345566777777 4322 334566666666
Q ss_pred HHhhcC--CCHHHHHHHHHcC--------------------------ChHHHHhccCCCChHHHHHHHHHHHHHHHhh
Q 009636 395 SNATSG--GTHEQIKFLVIQG--------------------------CIKPLCDLLVCPDPRIVTVCLEGLENILKVG 444 (530)
Q Consensus 395 ~nl~~~--~~~~~~~~l~~~~--------------------------~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~ 444 (530)
..++.. .+|.....+.+.+ ++..|+.++..+ ..+-..|.++|-.++...
T Consensus 81 ~~lc~~i~~~P~ll~~ff~~~~~~~~~~~~~~~~~~~~~~~~~~~f~Lf~~Ll~~vh~e-g~ig~~Are~LLll~~l~ 157 (353)
T PF10257_consen 81 NTLCSKIRKDPSLLNFFFESSPSQAQEEDSESSSSSFAGRTGKSEFLLFSLLLPYVHSE-GRIGDFAREGLLLLMSLA 157 (353)
T ss_pred HHHHHHHHhCHHHHHHHhcCCccccccccccCcccccCCCCCCccchHHHHHHHHhCcC-cHHHHHHHHHHHHHHhCC
Confidence 655541 2455555554332 245666776665 667778888888887766
No 417
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=27.20 E-value=51 Score=20.59 Aligned_cols=40 Identities=18% Similarity=0.200 Sum_probs=25.2
Q ss_pred HHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHH
Q 009636 308 TVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWT 351 (530)
Q Consensus 308 ~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~ 351 (530)
+|+.++..++.. +-...+...+...+.++ ++.||+.|..+
T Consensus 2 ~l~~iv~~dp~l---l~~~~v~~~i~~rl~D~-s~~VR~aav~l 41 (42)
T PF12765_consen 2 ALSSIVEKDPTL---LDSSDVQSAIIRRLSDS-SPSVREAAVDL 41 (42)
T ss_pred hHHHHHhcCccc---cchHHHHHHHHHHhcCC-ChHHHHHHHHH
Confidence 455555544422 12235667777888888 89999888754
No 418
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=26.73 E-value=5.7e+02 Score=24.45 Aligned_cols=136 Identities=12% Similarity=0.004 Sum_probs=73.1
Q ss_pred HHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChh-hhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHH
Q 009636 205 PLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFD-QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE 283 (530)
Q Consensus 205 ~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~-~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~ 283 (530)
.|.+.|...-...+...|+.+...+...-...... ...-..+.|..++......|+-..+..+-...-.-........
T Consensus 58 rLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l- 136 (307)
T PF04118_consen 58 RLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCL- 136 (307)
T ss_pred HHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHH-
Confidence 34445533334556666666665555543221111 1122345566666666666776666666443322222333333
Q ss_pred hCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHH
Q 009636 284 AGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACW 350 (530)
Q Consensus 284 ~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~ 350 (530)
.|++..++.-+.+++.+....+...+-.+...-... -+...+...+-. ++.+|.-|..
T Consensus 137 ~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~-------~F~~~lwl~ii~--sp~~Rl~al~ 194 (307)
T PF04118_consen 137 KGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDK-------YFWQCLWLCIIT--SPSRRLGALN 194 (307)
T ss_pred HHHHHHhccccccCCchHHHHHHHHHHHHHHhcChh-------HHHHHHHHHHhc--CcchhHHHHH
Confidence 377777888888888888888888887776432211 233444444443 4556665553
No 419
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=26.70 E-value=4.8e+02 Score=23.61 Aligned_cols=131 Identities=18% Similarity=0.120 Sum_probs=82.2
Q ss_pred hHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC------------CH-HHH----HHHHHHHHHHhcCCh
Q 009636 87 SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED------------YP-QLQ----FEAAWALTNIASGTS 149 (530)
Q Consensus 87 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~------------~~-~i~----~~a~~~L~~l~~~~~ 149 (530)
......++..+..+++. ++-.....+.++++.+.+.|..-+ ++ .+. ..=...|+.++. ++
T Consensus 78 ~~y~~vGc~L~~~Ll~~--~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~-~~ 154 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLSS--PEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSS-TP 154 (226)
T ss_pred hHHHHHHHHHHHHHHcC--cHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhC-Ch
Confidence 44445677777777655 455666668888888888776541 01 122 222346777777 78
Q ss_pred hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhh
Q 009636 150 EHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF 229 (530)
Q Consensus 150 ~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L 229 (530)
.....+-+.++...+..+....+. ......+|.++=...+ |....++.......+..++..|+..|..+
T Consensus 155 ~Gl~lLe~~~if~~l~~i~~~~~~--~~l~klil~~LDY~~~---------~~~R~iLsKaLt~~s~~iRl~aT~~L~~l 223 (226)
T PF14666_consen 155 NGLKLLERWNIFTMLYHIFSLSSR--DDLLKLILSSLDYSVD---------GHPRIILSKALTSGSESIRLYATKHLRVL 223 (226)
T ss_pred hHHHHHHHCCHHHHHHHHHccCch--HHHHHHHHhhCCCCCc---------cHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 888888889999999999877533 2333335555532222 23334444333777889999999888776
Q ss_pred cc
Q 009636 230 CR 231 (530)
Q Consensus 230 ~~ 231 (530)
.+
T Consensus 224 lr 225 (226)
T PF14666_consen 224 LR 225 (226)
T ss_pred hc
Confidence 54
No 420
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=26.58 E-value=1.2e+03 Score=28.06 Aligned_cols=105 Identities=11% Similarity=0.111 Sum_probs=59.9
Q ss_pred hHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHH
Q 009636 329 LPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKF 408 (530)
Q Consensus 329 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~ 408 (530)
+...-.+|.+. ++.++..++..-..+...... ..+..++..|+..+-+++..-...|+.+|..++.. +++....
T Consensus 437 L~la~~Ll~S~-e~~v~~FG~~~Y~~lF~~fds----~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~-~~~~l~~ 510 (1426)
T PF14631_consen 437 LSLAQSLLRSK-EPSVREFGSHLYKYLFKEFDS----YCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEK-NPSELQP 510 (1426)
T ss_dssp HHHHHHHHTSS-SHHHHHHHHHHHHHHHHSS-H----HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH--HHHHHH
T ss_pred HHHHHHHHhCC-CHHHHHHHHHHHHHHHhhccc----hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-cHHHHHH
Confidence 33344455666 888999888888887775433 22344777888877666544446889999999874 3333222
Q ss_pred HHHcCChHHHHhccCCCChHHHHHHHHHHHHHH
Q 009636 409 LVIQGCIKPLCDLLVCPDPRIVTVCLEGLENIL 441 (530)
Q Consensus 409 l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll 441 (530)
+ ...+..+++.++.=+..=+......|+.+.
T Consensus 511 f--a~~l~giLD~l~~Ls~~qiR~lf~il~~La 541 (1426)
T PF14631_consen 511 F--ATFLKGILDYLDNLSLQQIRKLFDILCTLA 541 (1426)
T ss_dssp T--HHHHHGGGGGGGG--HHHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 1 123455555555444433334566666554
No 421
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=26.19 E-value=2.8e+02 Score=24.09 Aligned_cols=74 Identities=16% Similarity=0.205 Sum_probs=51.3
Q ss_pred HHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 009636 288 PRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVI 367 (530)
Q Consensus 288 ~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 367 (530)
+.+.....+++.-++..++.++...... .... ..+++.+-.++.++ +.-|++...|+|..++...++.+..++
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~-~~~~-----~~~l~~~~~~~~d~-~~~Vqkav~w~L~~~~~~~~~~v~~~l 180 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK-ETDF-----DLLLEIIERLLHDE-EYFVQKAVGWALREYGKKDPERVIAFL 180 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh-cccH-----HHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 5677778888888888887777666543 1111 12345555555656 889999999999999988777665555
Q ss_pred H
Q 009636 368 E 368 (530)
Q Consensus 368 ~ 368 (530)
+
T Consensus 181 ~ 181 (197)
T cd06561 181 E 181 (197)
T ss_pred H
Confidence 4
No 422
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=26.07 E-value=1.5e+02 Score=23.52 Aligned_cols=39 Identities=15% Similarity=0.151 Sum_probs=31.6
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHh
Q 009636 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVID 157 (530)
Q Consensus 117 ~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~ 157 (530)
+++.|+.-|.+++ +++...|+.+|...+... .....++.
T Consensus 9 ~i~lLv~QL~D~~-~~V~~~A~~iL~e~c~~~-~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPS-PEVVAAALEILEEACEDK-EYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCC-HHHHHHHHHHHHHHHhch-hhHHHHHH
Confidence 4788999998888 899999999999999854 55555554
No 423
>PF10257 RAI16-like: Retinoic acid induced 16-like protein; InterPro: IPR019384 This entry represents a conserved sequence region found in a family of proteins described as retinoic acid-induced protein 16-like proteins. These proteins are conserved from worms to humans, but their function is not known.
Probab=24.79 E-value=6.6e+02 Score=24.55 Aligned_cols=130 Identities=11% Similarity=0.096 Sum_probs=80.3
Q ss_pred HHHHHhCcHHHHHHhhCCC-CchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHh-hcCCC----chhHHHHHHHHH
Q 009636 279 QAVIEAGVFPRLAEFLMHP-SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNL-LSGNY----KKSIKKEACWTV 352 (530)
Q Consensus 279 ~~~~~~~~l~~L~~lL~~~-~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~l-L~~~~----~~~v~~~a~~~L 352 (530)
+.+.+..++..|+.+-..+ .+.++..+++.+.++....... .+....+...+.++ +.... ...+.++-...+
T Consensus 3 Eyll~~~Il~~L~~la~~d~p~g~r~~~l~f~~~Ll~~~~~p--lL~h~~v~~pl~~L~l~~c~~~~~~~~~E~~lV~lL 80 (353)
T PF10257_consen 3 EYLLQHQILETLCTLAKADYPPGMRQEVLKFFSRLLSQSQQP--LLPHRSVHRPLQRLLLRSCGESRSASPTEKELVELL 80 (353)
T ss_pred HHHHHhChHHHHHHHHcccCChHHHHHHHHHHHHHHHhcccc--cccchhhhhhHHHHHHHHhCCCCCCchHHHHHHHHH
Confidence 3456667788888876554 4668888888888888654432 23344566666666 43221 234555556666
Q ss_pred HHHhc---CCHHHHHHHHHh--------------------------CcHHHHHHHHhcCchhHHHHHHHHHHHhhcCC--
Q 009636 353 SNITA---GNREQIQAVIEA--------------------------NIIGPLVALLENAEFDIKKEAAWAISNATSGG-- 401 (530)
Q Consensus 353 ~nl~~---~~~~~~~~l~~~--------------------------~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~-- 401 (530)
..+|. .+|.....+++. .++..|+..+.+. -++-..|..+|.-++.-.
T Consensus 81 ~~lc~~i~~~P~ll~~ff~~~~~~~~~~~~~~~~~~~~~~~~~~~f~Lf~~Ll~~vh~e-g~ig~~Are~LLll~~l~~~ 159 (353)
T PF10257_consen 81 NTLCSKIRKDPSLLNFFFESSPSQAQEEDSESSSSSFAGRTGKSEFLLFSLLLPYVHSE-GRIGDFAREGLLLLMSLASE 159 (353)
T ss_pred HHHHHHHHhCHHHHHHHhcCCccccccccccCcccccCCCCCCccchHHHHHHHHhCcC-cHHHHHHHHHHHHHHhCCCC
Confidence 66664 466655555532 2467777777765 567777777777776654
Q ss_pred CHHHHHHHHH
Q 009636 402 THEQIKFLVI 411 (530)
Q Consensus 402 ~~~~~~~l~~ 411 (530)
++....++++
T Consensus 160 ~~~~~~~i~~ 169 (353)
T PF10257_consen 160 DPALAQYIVE 169 (353)
T ss_pred CcHHHHHHHH
Confidence 5556666666
No 424
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=24.67 E-value=1.9e+02 Score=25.11 Aligned_cols=73 Identities=12% Similarity=0.245 Sum_probs=48.7
Q ss_pred HHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHH
Q 009636 330 PCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFL 409 (530)
Q Consensus 330 ~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l 409 (530)
+.+..+..++ +.-+++.++.++....... .... .+++.+-.++.+.+..|+..+.|+|..+... .++....+
T Consensus 108 ~~~~~w~~s~-~~~~rR~~~~~~~~~~~~~-~~~~-----~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~-~~~~v~~~ 179 (197)
T cd06561 108 DLLEEWAKSE-NEWVRRAAIVLLLRLIKKE-TDFD-----LLLEIIERLLHDEEYFVQKAVGWALREYGKK-DPERVIAF 179 (197)
T ss_pred HHHHHHHhCC-cHHHHHHHHHHHHHHHHhc-ccHH-----HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh-CHHHHHHH
Confidence 6788888888 8888888877776655430 0111 1334444455667889999999999999987 44444333
Q ss_pred H
Q 009636 410 V 410 (530)
Q Consensus 410 ~ 410 (530)
+
T Consensus 180 l 180 (197)
T cd06561 180 L 180 (197)
T ss_pred H
Confidence 3
No 425
>COG2914 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.60 E-value=41 Score=25.27 Aligned_cols=30 Identities=27% Similarity=0.482 Sum_probs=24.0
Q ss_pred chHhhhhcCC-CCCchHHhhhhhhHHHHHHH
Q 009636 9 ADSRRNKYKV-AVDADEGRRRREDNMVEIRK 38 (530)
Q Consensus 9 ~~~~~~~~k~-~~~~~e~~~~r~~~~~~lRk 38 (530)
..+|...|++ --|+.|.|++|-+.+...++
T Consensus 67 dgDRVEIyRPLlaDPKE~RR~Ra~~~~~~~~ 97 (99)
T COG2914 67 DGDRVEIYRPLLADPKEARRKRAERAAAAKK 97 (99)
T ss_pred CCCEEEEecccccChHHHHHHHHHHHHHhhc
Confidence 3589999999 78999999999777655543
No 426
>KOG1791 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.01 E-value=1.3e+03 Score=27.64 Aligned_cols=183 Identities=13% Similarity=0.135 Sum_probs=99.8
Q ss_pred hhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC----CCchhHHH-HH--HHHhHhh
Q 009636 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH----PSPSVLIP-AL--RTVGNIV 313 (530)
Q Consensus 241 ~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~----~~~~~~~~-al--~~L~nl~ 313 (530)
..+++..+...+.+.|+.++..++|++.-.-++.+.........-.+-.+..+.++ +++.+... ++ .-..+++
T Consensus 1437 s~~lLa~~F~~lSS~D~~mr~la~~~lqi~~dHLe~l~ek~~a~~~ll~L~~l~qng~~e~~~Rl~si~alF~A~~~~il 1516 (1758)
T KOG1791|consen 1437 SRGLLALLFKGLSSDDPSMRKLAYWVLQIFLDHLENLLEKKQAQFNLLYLSCLAQNGSRESDPRLISICALFIAFFSDIL 1516 (1758)
T ss_pred hcccHHHHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCcchhhHHHHHHHHHHHHH
Confidence 35556666667777788888877777755544433211111111112223333332 12222111 11 1112222
Q ss_pred cCCchh----h------HHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc--CCHHHHHHHHHhCcHHHHHHHHhc
Q 009636 314 TGDDMQ----T------QCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA--GNREQIQAVIEANIIGPLVALLEN 381 (530)
Q Consensus 314 ~~~~~~----~------~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~~~i~~L~~ll~~ 381 (530)
....+. . ...++...+|.+...+-+. .++-+.+--|.+.-+.. .+....+.+...+.+..++....+
T Consensus 1517 l~Ps~~ly~~In~~L~~s~~vdlq~iP~F~~ffySs-~~e~~t~R~Wvl~LV~~glks~~D~ql~~~~~~~~~~lsf~sS 1595 (1758)
T KOG1791|consen 1517 LVPSEGLYFPINGLLLSSKIVDLQGIPIFHRFFYSS-VFEHHTEREWVLELVSKGLKSCPDYQLLQIRNIFETLLSFYSS 1595 (1758)
T ss_pred cCCccccchhHHHHHHhhhhcccCCCccHHHHHHhc-cccccchhhhhHHHHHHHhcCchhhhHHhhcCcceEeehhhcc
Confidence 211111 0 1233456677777777665 55555555666655544 244556667778888888888877
Q ss_pred C--chhHHHHHHHHHHHhhcCCCHHHHHHHH-HcCChHHHHhccCCCC
Q 009636 382 A--EFDIKKEAAWAISNATSGGTHEQIKFLV-IQGCIKPLCDLLVCPD 426 (530)
Q Consensus 382 ~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~-~~~~i~~L~~lL~~~~ 426 (530)
+ +...+.-.+.+|++-+.. +.....+. ..|+...+..++.+.-
T Consensus 1596 ~l~~~~S~~LIL~~L~~~Vk~--p~~a~~mle~~Gl~sWi~niI~s~~ 1641 (1758)
T KOG1791|consen 1596 PLASEESKRLILATLQKGVKF--PFYAYEMLEVPGLFSWILNIIPSSF 1641 (1758)
T ss_pred hhHHHHHHHHHHHHHHhcCCC--cHHHHHHHhcccHHHHHHHhccccc
Confidence 5 566777777777777764 23333444 5688899999998753
No 427
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=23.97 E-value=4.7e+02 Score=22.49 Aligned_cols=155 Identities=10% Similarity=0.099 Sum_probs=83.0
Q ss_pred hHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHH
Q 009636 329 LPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKF 408 (530)
Q Consensus 329 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~ 408 (530)
=|.|+.+|... .++......|+.+.+.-...+ ...+.|.-+.|.+.+.+....-...|...+..+...-..+.+..
T Consensus 5 kplLIsCL~~q---~~k~s~~KiL~~iVs~Va~~v-~~~~~~~W~eL~d~Ils~~~~e~~kA~~IF~~L~~~l~~efl~~ 80 (174)
T PF04510_consen 5 KPLLISCLTMQ---ETKESDFKILRRIVSHVAYEV-FDLQEGGWDELSDCILSLSENEPVKAFHIFICLPMPLYGEFLIP 80 (174)
T ss_pred HHHHHHHHHhh---cccHhHHHHHHHHHHHHHHHH-HhcCCCCchhHHHHHHHhhccchHHHHHHHHhCCchhhhhHHHH
Confidence 35677777644 233333444444433211111 11245666666676655433444678888888874335566666
Q ss_pred HHHcCChHHHHhccCCCC-hHHHH--HHH-HHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCH-HHH
Q 009636 409 LVIQGCIKPLCDLLVCPD-PRIVT--VCL-EGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNA-EIY 483 (530)
Q Consensus 409 l~~~~~i~~L~~lL~~~~-~~~~~--~al-~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~-~v~ 483 (530)
+++. +++.+...|..+. .++.. .|+ .+++..+...+.... ...+..++.. .++.+.++.+...+ +.-
T Consensus 81 ~~~~-L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~~-----~~~vk~L~~~--mv~Sv~elV~~g~E~~~l 152 (174)
T PF04510_consen 81 FMEN-LLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSMR-----VDLVKELLPK--MVKSVKELVERGMEVGFL 152 (174)
T ss_pred HHHH-HHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccccH-----HHHHHHHHHH--HHHHHHHHHHcccHHHHH
Confidence 6665 6666666665542 33332 222 333333333322110 1123333322 46788888888888 888
Q ss_pred HHHHHHHHHhCC
Q 009636 484 EKSVKLLETYWL 495 (530)
Q Consensus 484 ~~a~~il~~~~~ 495 (530)
.+|..-+++++.
T Consensus 153 ~rgl~~~e~~v~ 164 (174)
T PF04510_consen 153 RRGLRDFESFVS 164 (174)
T ss_pred HHHHHHHHHHHH
Confidence 888888888764
No 428
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=23.68 E-value=2.2e+02 Score=21.44 Aligned_cols=59 Identities=10% Similarity=0.104 Sum_probs=40.4
Q ss_pred CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHh
Q 009636 85 NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIA 145 (530)
Q Consensus 85 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~-~~~i~~~a~~~L~~l~ 145 (530)
++..++..|+..+..++...... ..-++..++..+.+.+.+++ +....+-|+..|..+.
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~--~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG 77 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSS--YPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALG 77 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 46789999999999888764211 11123356777877776554 4567888888888883
No 429
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=23.56 E-value=3.9e+02 Score=22.95 Aligned_cols=94 Identities=14% Similarity=0.139 Sum_probs=58.9
Q ss_pred chhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhh
Q 009636 215 KLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL 294 (530)
Q Consensus 215 ~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL 294 (530)
-.+++..|..+++.+........ ....++..+..-+.. +.+|+.-+...+..++...+.....-++ .+++.+-..|
T Consensus 40 GLelRK~ayE~lytlLd~~~~~~--~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld-~l~~~l~~~L 115 (169)
T PF08623_consen 40 GLELRKAAYECLYTLLDTCLSRI--DISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLD-SLVEPLRKTL 115 (169)
T ss_dssp GGHHHHHHHHHHHHHHHSTCSSS---HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCT-TTHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHh
Confidence 46889999999999877542222 245557777777766 8999999999999998776654332222 4556666665
Q ss_pred CCC------------CchhHHHHHHHHhHh
Q 009636 295 MHP------------SPSVLIPALRTVGNI 312 (530)
Q Consensus 295 ~~~------------~~~~~~~al~~L~nl 312 (530)
+.. ..+....+++++..+
T Consensus 116 ~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l 145 (169)
T PF08623_consen 116 SKKLKENAVKQEIEKQQELIRSVLRAVKAL 145 (169)
T ss_dssp H----TTS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCCCcccccHHHHHHHHHHHHHHHHHH
Confidence 431 113455566666555
No 430
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.51 E-value=86 Score=30.12 Aligned_cols=56 Identities=11% Similarity=0.083 Sum_probs=46.9
Q ss_pred HHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc-CCCchhHHHHHHHHhhhhccCC
Q 009636 178 QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN-GQPKLSMLRNATWTLSNFCRGK 233 (530)
Q Consensus 178 ~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~-~~~~~~~~~~a~~~L~~L~~~~ 233 (530)
+....|++||.-.+..++.+.+.|+++-++.-.. ++.++-+++....|+.+|..+.
T Consensus 375 Hvir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN 431 (478)
T KOG2676|consen 375 HVIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNN 431 (478)
T ss_pred HHHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcc
Confidence 3677899999988889999999999988877654 5568889999999999998875
No 431
>PF04064 DUF384: Domain of unknown function (DUF384); InterPro: IPR007206 This is a protein of unknown function. It is found C-terminal to another domain of unknown function (IPR007205 from INTERPRO).
Probab=21.34 E-value=2.8e+02 Score=18.90 Aligned_cols=43 Identities=14% Similarity=0.233 Sum_probs=34.6
Q ss_pred hHHHhhhhccHHHHHHHh-cCCCHHHHHHHHHHHHHhCCCCCCC
Q 009636 458 FTQMIDDAEGLEKIESLQ-THDNAEIYEKSVKLLETYWLDDEDE 500 (530)
Q Consensus 458 ~~~~l~~~~~~~~l~~l~-~~~~~~v~~~a~~il~~~~~~~~~~ 500 (530)
.+..+.+.|+...|.++. .-++++|.+.+..+++-+..++.++
T Consensus 11 GR~~lR~~~vY~IlRe~h~~E~d~~V~e~~erlV~iLirdE~e~ 54 (58)
T PF04064_consen 11 GREYLREKGVYPILRELHKWEEDEEVQEACERLVQILIRDEPEE 54 (58)
T ss_pred HHHHHHHcCchHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCcc
Confidence 478889999999998884 4578999999999998877655543
No 432
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=21.01 E-value=2.5e+02 Score=24.87 Aligned_cols=79 Identities=15% Similarity=0.186 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhh
Q 009636 131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQL 210 (530)
Q Consensus 131 ~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll 210 (530)
..+...+...|..++.++.++...+.+. ++.++..+.......--.+..++..+..+++.....+.+. .+..++.++
T Consensus 75 ~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~~~~~~~~~~d~l~~i~~dN~~L~~~i~e~-~I~~~i~ll 151 (207)
T PF01365_consen 75 KELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQLQIGYGLGALDVLTEIFRDNPELCESISEE-HIEKFIELL 151 (207)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCCCH-TTHHHHHHHHHHHTT---------------------
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHhhccCCchHHHHHHHHHHCcHHHHHHhhHH-HHHHHHHHH
Confidence 3567888999999999988888777653 3333333322212222345667777777877666555444 377788877
Q ss_pred cC
Q 009636 211 NG 212 (530)
Q Consensus 211 ~~ 212 (530)
..
T Consensus 152 ~~ 153 (207)
T PF01365_consen 152 RK 153 (207)
T ss_dssp --
T ss_pred HH
Confidence 43
No 433
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=20.92 E-value=5.2e+02 Score=21.92 Aligned_cols=72 Identities=14% Similarity=0.090 Sum_probs=46.7
Q ss_pred CChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC
Q 009636 201 GGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG 273 (530)
Q Consensus 201 ~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~ 273 (530)
+.+...+..+..-.|..+...++.++.+.... ..-.......++|.+..+|.+..+.-...++..+..+...
T Consensus 28 ~~~k~ai~~~~~~~D~svlvD~L~vl~~~~~~-~~~tLd~c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~ 99 (164)
T PF13925_consen 28 NDIKGAIEYAVRMNDPSVLVDVLSVLNQSLKP-EKWTLDLCVDLLPLIEELLQSKYESYISVALEMLRSILKK 99 (164)
T ss_pred CcHHHHHHHHHhcCCchHHHHHHHHHHHhcCc-CcccHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 34444444444445666666666666544333 2344556678899999999999888777888777766543
No 434
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=20.73 E-value=2.4e+02 Score=26.78 Aligned_cols=54 Identities=15% Similarity=0.124 Sum_probs=38.9
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCc-------------HHHHHHcCCHHHHHHhhc
Q 009636 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPP-------------IEEVIRSGVVPRFVEFLL 126 (530)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~-------------~~~~~~~g~v~~Lv~ll~ 126 (530)
..+..+++.|.+++...+..|+++|..++.+.-... ...+.+.|+++.|+.+|.
T Consensus 60 ~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 60 DFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred HHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 477899999999999999999999999987631111 123345566666666665
No 435
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=20.51 E-value=5.5e+02 Score=22.06 Aligned_cols=150 Identities=12% Similarity=0.089 Sum_probs=71.2
Q ss_pred HHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHh-cCCHHHHHHH
Q 009636 288 PRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT-AGNREQIQAV 366 (530)
Q Consensus 288 ~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~-~~~~~~~~~l 366 (530)
+.|+..|...+. .......|+.++..-.... ...+.|.-+-|..++.+. ...--..|..+...|. ....+.+..+
T Consensus 6 plLIsCL~~q~~--k~s~~KiL~~iVs~Va~~v-~~~~~~~W~eL~d~Ils~-~~~e~~kA~~IF~~L~~~l~~efl~~~ 81 (174)
T PF04510_consen 6 PLLISCLTMQET--KESDFKILRRIVSHVAYEV-FDLQEGGWDELSDCILSL-SENEPVKAFHIFICLPMPLYGEFLIPF 81 (174)
T ss_pred HHHHHHHHhhcc--cHhHHHHHHHHHHHHHHHH-HhcCCCCchhHHHHHHHh-hccchHHHHHHHHhCCchhhhhHHHHH
Confidence 456666655432 2333344444432111110 112445555555555443 2222356777777776 3445666666
Q ss_pred HHhCcHHHHHHHHhcC-chhHHHHHH------HHHHHhhcCCC-HHHHHHHHHcCChHHHHhccCCCCh-HHHHHHHHHH
Q 009636 367 IEANIIGPLVALLENA-EFDIKKEAA------WAISNATSGGT-HEQIKFLVIQGCIKPLCDLLVCPDP-RIVTVCLEGL 437 (530)
Q Consensus 367 ~~~~~i~~L~~ll~~~-~~~v~~~a~------~aL~nl~~~~~-~~~~~~l~~~~~i~~L~~lL~~~~~-~~~~~al~~l 437 (530)
++. +++...+.|.++ +.++....+ .+...+..... .+..+.++.. .++.+-+++..+.. ..+..++.-+
T Consensus 82 ~~~-L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~~~~~vk~L~~~-mv~Sv~elV~~g~E~~~l~rgl~~~ 159 (174)
T PF04510_consen 82 MEN-LLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSMRVDLVKELLPK-MVKSVKELVERGMEVGFLRRGLRDF 159 (174)
T ss_pred HHH-HHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH-HHHHHHHHHHcccHHHHHHHHHHHH
Confidence 664 777777777665 223321111 11112222222 2333333332 45555556655555 6666666666
Q ss_pred HHHHHh
Q 009636 438 ENILKV 443 (530)
Q Consensus 438 ~~ll~~ 443 (530)
..++..
T Consensus 160 e~~v~~ 165 (174)
T PF04510_consen 160 ESFVSR 165 (174)
T ss_pred HHHHHH
Confidence 666543
No 436
>PLN03205 ATR interacting protein; Provisional
Probab=20.09 E-value=5.5e+02 Score=25.36 Aligned_cols=114 Identities=12% Similarity=0.144 Sum_probs=64.4
Q ss_pred cHHHHHHhhCCCCchhHHHHHHHHhHhhc---CCchhhHHHhhcCchHHHHHhhc---CCCchhHHHHHHHHHHHHhcC-
Q 009636 286 VFPRLAEFLMHPSPSVLIPALRTVGNIVT---GDDMQTQCVIEYQALPCLLNLLS---GNYKKSIKKEACWTVSNITAG- 358 (530)
Q Consensus 286 ~l~~L~~lL~~~~~~~~~~al~~L~nl~~---~~~~~~~~~~~~~~l~~L~~lL~---~~~~~~v~~~a~~~L~nl~~~- 358 (530)
+++.|+.+..-++..+...+++.|..+.. ++....+.-.+.+.+..+--+.+ ......||-+|..+..-+...
T Consensus 324 LlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlmss 403 (652)
T PLN03205 324 LVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVMST 403 (652)
T ss_pred HHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhhhcc
Confidence 34556666666676677777776655542 23332233334444443322222 121556777777655544442
Q ss_pred -CHHHHHHHHHhCcHHHHHHHHhcC-chhHHHHHHHHHHHhhc
Q 009636 359 -NREQIQAVIEANIIGPLVALLENA-EFDIKKEAAWAISNATS 399 (530)
Q Consensus 359 -~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~ 399 (530)
....+..+....+++.+-.+|+.. -..||++|+..|.-+..
T Consensus 404 na~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLN 446 (652)
T PLN03205 404 DAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLN 446 (652)
T ss_pred chhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHc
Confidence 223344455567788888888665 47899999877665543
Done!