Query 009636
Match_columns 530
No_of_seqs 393 out of 2779
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 09:38:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009636.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009636hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tpo_A Importin subunit alpha- 100.0 5.6E-76 1.9E-80 607.6 46.8 518 1-529 1-529 (529)
2 3ul1_B Importin subunit alpha- 100.0 5.2E-65 1.8E-69 522.5 47.6 489 29-529 14-510 (510)
3 4b8j_A Importin subunit alpha- 100.0 7.6E-65 2.6E-69 526.5 49.0 501 1-502 3-503 (528)
4 1wa5_B Importin alpha subunit; 100.0 3.2E-59 1.1E-63 484.2 42.1 491 8-500 13-515 (530)
5 2jdq_A Importin alpha-1 subuni 100.0 1.5E-46 5.2E-51 381.7 47.6 426 74-500 21-448 (450)
6 3now_A UNC-45 protein, SD10334 100.0 7.1E-40 2.4E-44 342.4 30.4 366 74-446 378-786 (810)
7 3nmz_A APC variant protein; pr 100.0 1.9E-39 6.5E-44 321.8 30.3 369 70-445 29-453 (458)
8 3tpo_A Importin subunit alpha- 100.0 1.8E-38 6.3E-43 327.4 36.0 368 72-443 118-498 (529)
9 1xm9_A Plakophilin 1; armadill 100.0 9.6E-39 3.3E-43 322.5 33.1 365 117-498 3-452 (457)
10 3ul1_B Importin subunit alpha- 100.0 9.5E-39 3.3E-43 327.6 33.4 367 73-443 100-479 (510)
11 1jdh_A Beta-catenin; beta-cate 100.0 7.6E-37 2.6E-41 316.9 39.7 402 73-493 101-528 (529)
12 2z6h_A Catenin beta-1, beta-ca 100.0 2.1E-36 7.1E-41 320.0 41.0 405 73-498 98-550 (644)
13 3now_A UNC-45 protein, SD10334 100.0 1.6E-37 5.5E-42 324.6 29.5 403 75-494 332-781 (810)
14 1xm9_A Plakophilin 1; armadill 100.0 2.5E-37 8.7E-42 312.1 26.1 363 74-444 3-451 (457)
15 1wa5_B Importin alpha subunit; 100.0 1.2E-35 4E-40 307.5 36.4 368 73-444 130-512 (530)
16 2jdq_A Importin alpha-1 subuni 100.0 6.2E-36 2.1E-40 303.5 32.9 366 73-443 64-444 (450)
17 4b8j_A Importin subunit alpha- 100.0 9.2E-36 3.2E-40 308.3 34.3 367 73-444 117-498 (528)
18 3l6x_A Catenin delta-1; cateni 100.0 8.3E-36 2.8E-40 301.9 30.1 365 73-445 48-479 (584)
19 2z6g_A B-catenin; FULL-length, 100.0 1E-33 3.5E-38 303.8 43.6 405 73-498 234-686 (780)
20 3l6x_A Catenin delta-1; cateni 100.0 1.4E-34 4.7E-39 293.0 33.3 366 114-495 46-476 (584)
21 3nmz_A APC variant protein; pr 100.0 1.2E-34 4.2E-39 287.4 25.3 327 71-401 68-452 (458)
22 1jdh_A Beta-catenin; beta-cate 100.0 1.5E-33 5.2E-38 292.1 28.4 402 73-494 59-488 (529)
23 2z6h_A Catenin beta-1, beta-ca 100.0 3.2E-32 1.1E-36 287.9 32.9 403 73-495 56-486 (644)
24 2z6g_A B-catenin; FULL-length, 100.0 5.4E-32 1.8E-36 290.4 31.8 402 73-494 192-621 (780)
25 3nmw_A APC variant protein; AR 100.0 5.1E-30 1.8E-34 247.1 24.9 273 171-446 44-338 (354)
26 3nmw_A APC variant protein; AR 100.0 2.5E-30 8.5E-35 249.3 22.1 269 132-403 47-338 (354)
27 4hxt_A De novo protein OR329; 100.0 8.3E-27 2.8E-31 216.9 24.4 240 116-358 2-242 (252)
28 4hxt_A De novo protein OR329; 100.0 1.7E-26 5.8E-31 214.8 23.7 241 159-401 2-243 (252)
29 1xqr_A HSPBP1 protein; armadil 99.9 1.4E-26 4.7E-31 217.2 22.6 234 258-498 55-290 (296)
30 4db8_A Armadillo-repeat protei 99.9 7.3E-27 2.5E-31 217.3 20.7 239 116-357 12-251 (252)
31 4db8_A Armadillo-repeat protei 99.9 2.3E-26 7.7E-31 214.0 20.5 239 73-314 12-251 (252)
32 3opb_A SWI5-dependent HO expre 99.9 4.9E-24 1.7E-28 218.6 23.2 322 74-399 335-728 (778)
33 3opb_A SWI5-dependent HO expre 99.9 1.4E-22 4.7E-27 207.9 30.0 399 74-495 256-728 (778)
34 4db6_A Armadillo repeat protei 99.9 8.6E-23 2.9E-27 184.2 24.4 199 241-441 10-208 (210)
35 4db6_A Armadillo repeat protei 99.9 2.2E-22 7.5E-27 181.5 20.8 199 114-314 10-209 (210)
36 1xqr_A HSPBP1 protein; armadil 99.9 1E-21 3.5E-26 184.1 20.9 226 131-357 54-287 (296)
37 3tt9_A Plakophilin-2; cell adh 99.8 1.4E-20 5E-25 168.4 14.8 197 117-315 9-230 (233)
38 3tt9_A Plakophilin-2; cell adh 99.8 6.1E-20 2.1E-24 164.4 14.4 197 73-273 8-230 (233)
39 1b3u_A Protein (protein phosph 99.8 2.8E-17 9.6E-22 172.0 26.9 344 116-494 242-586 (588)
40 4fdd_A Transportin-1; heat rep 99.8 6.2E-18 2.1E-22 184.7 21.9 355 75-446 92-475 (852)
41 4fdd_A Transportin-1; heat rep 99.8 6.5E-17 2.2E-21 176.6 24.6 400 74-494 175-657 (852)
42 1b3u_A Protein (protein phosph 99.8 1.2E-16 4.2E-21 167.2 25.6 381 74-495 165-548 (588)
43 2vgl_B AP-2 complex subunit be 99.7 3.3E-16 1.1E-20 163.2 25.7 333 74-445 87-422 (591)
44 3grl_A General vesicular trans 99.7 1.1E-14 3.8E-19 145.7 34.2 416 73-500 60-555 (651)
45 3grl_A General vesicular trans 99.7 1.3E-14 4.3E-19 145.3 30.8 410 73-495 21-503 (651)
46 1oyz_A Hypothetical protein YI 99.7 2.4E-15 8.3E-20 141.6 21.6 258 113-438 20-278 (280)
47 2vgl_B AP-2 complex subunit be 99.7 7.7E-15 2.6E-19 152.8 27.0 332 73-444 49-384 (591)
48 1oyz_A Hypothetical protein YI 99.7 1.4E-14 5E-19 136.3 23.1 254 73-395 23-278 (280)
49 1w63_A Adapter-related protein 99.7 3.3E-14 1.1E-18 148.6 27.0 336 15-400 18-380 (618)
50 2bpt_A Importin beta-1 subunit 99.6 3.1E-14 1.1E-18 155.9 25.0 355 74-445 325-714 (861)
51 2bpt_A Importin beta-1 subunit 99.6 1.3E-13 4.3E-18 151.1 27.3 399 76-495 372-811 (861)
52 1ibr_B P95, importin beta-1 su 99.6 7.8E-14 2.7E-18 141.2 20.6 390 74-495 2-437 (462)
53 1qgr_A Protein (importin beta 99.6 1.6E-13 5.3E-18 150.6 24.4 404 75-494 368-826 (876)
54 1w63_A Adapter-related protein 99.6 3.6E-13 1.2E-17 140.7 25.6 369 74-495 108-577 (618)
55 1qgr_A Protein (importin beta 99.6 2.7E-13 9.3E-18 148.7 25.9 276 75-358 174-480 (876)
56 1ibr_B P95, importin beta-1 su 99.6 2.1E-14 7.1E-19 145.5 15.2 362 74-446 36-441 (462)
57 1u6g_C TIP120 protein, CAND1; 99.5 1.9E-12 6.4E-17 147.0 27.1 404 74-495 7-463 (1230)
58 3ltm_A Alpha-REP4; protein eng 99.4 9.8E-12 3.4E-16 111.4 20.0 188 158-401 18-205 (211)
59 1u6g_C TIP120 protein, CAND1; 99.4 6.9E-12 2.3E-16 142.4 23.5 398 74-494 87-547 (1230)
60 3ltj_A Alpharep-4; protein eng 99.4 2.8E-11 9.7E-16 107.5 21.8 185 159-399 14-198 (201)
61 3ltm_A Alpha-REP4; protein eng 99.4 1.2E-11 4.3E-16 110.8 19.1 188 115-359 18-205 (211)
62 2vgl_A Adaptor protein complex 99.4 2E-10 6.9E-15 119.6 29.3 374 19-442 23-433 (621)
63 3ltj_A Alpharep-4; protein eng 99.4 2.5E-11 8.6E-16 107.8 19.2 184 116-356 14-197 (201)
64 2vgl_A Adaptor protein complex 99.3 4.4E-10 1.5E-14 117.0 23.1 330 74-443 112-471 (621)
65 2db0_A 253AA long hypothetical 99.1 9.8E-09 3.4E-13 84.4 17.8 218 157-400 30-247 (253)
66 4gmo_A Putative uncharacterize 99.1 2.5E-09 8.5E-14 112.8 17.5 216 115-356 34-257 (684)
67 4ady_A RPN2, 26S proteasome re 99.1 3.3E-08 1.1E-12 104.2 24.6 273 74-402 393-679 (963)
68 4gmo_A Putative uncharacterize 98.9 9.6E-09 3.3E-13 108.4 13.0 197 242-442 34-258 (684)
69 3b2a_A TON_1937, putative unch 98.9 1.4E-07 4.7E-12 81.3 17.0 226 242-493 32-259 (265)
70 2db0_A 253AA long hypothetical 98.9 6E-07 2E-11 74.0 19.9 217 199-443 30-247 (253)
71 3tjz_B Coatomer subunit gamma; 98.9 1.5E-07 5.1E-12 89.3 19.1 278 74-395 69-349 (355)
72 1ho8_A Vacuolar ATP synthase s 98.8 1.6E-06 5.3E-11 84.2 25.7 322 158-494 76-475 (480)
73 4ady_A RPN2, 26S proteasome re 98.8 1.3E-06 4.3E-11 92.4 25.5 271 117-443 393-677 (963)
74 3tjz_B Coatomer subunit gamma; 98.8 1E-07 3.5E-12 90.4 15.8 315 80-444 32-352 (355)
75 2qk2_A LP04448P; mini spindles 98.8 1E-07 3.6E-12 86.9 14.1 187 203-400 17-206 (242)
76 2qk2_A LP04448P; mini spindles 98.7 6.2E-08 2.1E-12 88.5 10.9 186 162-357 18-205 (242)
77 3b2a_A TON_1937, putative unch 98.7 9.3E-07 3.2E-11 76.2 16.7 187 116-315 33-219 (265)
78 2qk1_A Protein STU2; STU2P, XM 98.6 5.4E-07 1.9E-11 82.1 12.6 194 163-357 20-220 (249)
79 2qk1_A Protein STU2; STU2P, XM 98.5 6.1E-07 2.1E-11 81.8 12.2 191 206-399 21-220 (249)
80 1te4_A Conserved protein MTH18 98.5 2.8E-08 9.5E-13 81.2 1.0 121 242-397 11-131 (131)
81 1ho8_A Vacuolar ATP synthase s 98.5 6.9E-05 2.4E-09 72.8 24.5 320 74-399 78-476 (480)
82 1te4_A Conserved protein MTH18 98.5 4.3E-08 1.5E-12 80.0 1.9 120 284-439 11-130 (131)
83 4hat_C Exportin-1; heat repeat 98.4 7.9E-05 2.7E-09 81.6 27.7 338 84-445 206-621 (1023)
84 2iw3_A Elongation factor 3A; a 98.4 3.2E-05 1.1E-09 82.8 21.4 303 72-398 13-323 (986)
85 1wa5_C Importin alpha RE-expor 98.3 0.0003 1E-08 77.5 29.4 344 76-443 88-526 (960)
86 2x1g_F Cadmus; transport prote 98.3 0.00014 4.8E-09 80.4 26.6 336 88-444 204-617 (971)
87 2x19_B Importin-13; nuclear tr 98.2 0.00014 4.8E-09 80.3 22.8 340 126-496 459-847 (963)
88 3m1i_C Exportin-1; heat repeat 98.2 0.00087 3E-08 74.5 28.9 342 85-444 207-620 (1049)
89 1wa5_C Importin alpha RE-expor 98.2 0.00012 4E-09 80.7 21.2 258 132-399 376-670 (960)
90 3dad_A FH1/FH2 domain-containi 98.2 7.3E-05 2.5E-09 69.0 16.1 186 246-432 121-326 (339)
91 2iw3_A Elongation factor 3A; a 98.2 0.00024 8E-09 76.2 22.4 296 164-494 19-323 (986)
92 3dad_A FH1/FH2 domain-containi 98.1 9.6E-05 3.3E-09 68.2 16.2 189 289-485 122-326 (339)
93 2x1g_F Cadmus; transport prote 98.1 0.00013 4.5E-09 80.6 20.2 300 131-446 478-818 (971)
94 3ibv_A Exportin-T; karyopherin 98.0 3.1E-05 1E-09 84.7 13.0 304 84-402 204-569 (980)
95 3m1i_C Exportin-1; heat repeat 97.8 0.022 7.4E-07 63.3 31.7 315 117-445 195-572 (1049)
96 2x19_B Importin-13; nuclear tr 97.8 0.0017 5.7E-08 71.7 21.7 333 83-444 459-848 (963)
97 4hat_C Exportin-1; heat repeat 97.8 0.0027 9.3E-08 69.6 22.9 390 85-495 465-929 (1023)
98 3oc3_A Helicase MOT1, MOT1; re 97.7 0.00022 7.4E-09 69.7 11.8 257 72-395 173-432 (800)
99 3gjx_A Exportin-1; transport, 97.7 0.0081 2.8E-07 65.8 24.2 300 84-402 218-598 (1073)
100 4ffb_C Protein STU2; tubulin f 97.5 0.0019 6.4E-08 59.8 14.8 193 72-273 9-213 (278)
101 3ibv_A Exportin-T; karyopherin 97.4 0.0048 1.6E-07 67.5 18.2 307 128-446 205-570 (980)
102 3c2g_A SYS-1 protein; beta-cat 97.4 0.017 5.8E-07 52.9 18.4 294 183-493 266-616 (619)
103 4ffb_C Protein STU2; tubulin f 97.4 0.0051 1.7E-07 56.8 15.8 189 290-495 14-212 (278)
104 3gjx_A Exportin-1; transport, 97.3 0.049 1.7E-06 59.7 25.0 310 118-446 208-599 (1073)
105 2of3_A ZYG-9; multifunctional 97.2 0.006 2E-07 55.1 13.4 181 247-444 50-238 (266)
106 2of3_A ZYG-9; multifunctional 97.1 0.013 4.3E-07 53.0 14.5 177 163-357 50-236 (266)
107 1upk_A MO25 protein; transfera 97.1 0.097 3.3E-06 48.3 20.0 202 278-492 71-280 (341)
108 1upk_A MO25 protein; transfera 97.0 0.032 1.1E-06 51.5 16.6 201 154-357 73-283 (341)
109 2fv2_A RCD1 required for cell 96.9 0.066 2.3E-06 47.2 17.0 187 256-445 14-227 (268)
110 3u0r_A Apoptosis inhibitor 5; 96.8 0.19 6.5E-06 48.7 20.7 155 164-339 34-189 (507)
111 3oc3_A Helicase MOT1, MOT1; re 96.6 0.011 3.7E-07 58.2 10.2 246 160-438 175-432 (800)
112 3c2g_A SYS-1 protein; beta-cat 96.4 0.27 9.4E-06 45.2 17.5 178 262-442 262-473 (619)
113 2fv2_A RCD1 required for cell 96.1 0.14 4.9E-06 45.1 13.5 141 91-233 74-226 (268)
114 1lrv_A LRV, leucine-rich repea 96.1 0.0051 1.7E-07 55.1 4.7 45 288-352 197-241 (244)
115 3l9t_A Putative uncharacterize 96.0 0.068 2.3E-06 46.7 11.1 147 242-411 70-218 (240)
116 3l9t_A Putative uncharacterize 96.0 0.32 1.1E-05 42.5 15.3 144 118-283 73-218 (240)
117 1lrv_A LRV, leucine-rich repea 95.9 0.0095 3.3E-07 53.3 5.8 140 163-394 102-241 (244)
118 3a6p_A Exportin-5; exportin-5, 95.8 0.97 3.3E-05 50.7 22.7 301 74-400 12-381 (1204)
119 3u0r_A Apoptosis inhibitor 5; 95.5 0.95 3.2E-05 43.9 17.7 209 214-444 40-252 (507)
120 3ebb_A Phospholipase A2-activa 95.3 1.7 5.7E-05 40.1 18.4 185 288-491 106-302 (304)
121 3ebb_A Phospholipase A2-activa 95.1 0.9 3.1E-05 41.9 16.1 174 118-296 105-287 (304)
122 2f31_A Diaphanous protein homo 95.1 0.61 2.1E-05 41.3 14.6 142 341-488 67-221 (233)
123 2f31_A Diaphanous protein homo 95.0 0.85 2.9E-05 40.3 15.1 141 91-233 19-182 (233)
124 3eg5_B Protein diaphanous homo 94.6 0.73 2.5E-05 44.2 14.6 162 318-486 101-285 (383)
125 3a6p_A Exportin-5; exportin-5, 94.6 2 6.9E-05 48.2 20.2 295 123-443 19-381 (1204)
126 3eg5_B Protein diaphanous homo 94.5 1.4 4.8E-05 42.2 16.4 157 76-234 69-249 (383)
127 1lsh_A Lipovitellin (LV-1N, LV 94.0 4.8 0.00017 44.3 21.2 172 203-403 393-580 (1056)
128 2bnx_A Diaphanous protein homo 93.4 3.3 0.00011 39.7 16.5 140 341-486 71-223 (386)
129 3fga_B Serine/threonine-protei 92.8 4.3 0.00015 38.7 15.9 235 152-400 122-367 (403)
130 1lsh_A Lipovitellin (LV-1N, LV 92.6 12 0.0004 41.3 21.5 166 161-359 393-578 (1056)
131 2bnx_A Diaphanous protein homo 92.5 4.8 0.00016 38.5 16.3 156 77-234 8-187 (386)
132 2npp_B PP2A, B subunit, serine 91.3 11 0.00036 36.7 17.0 237 150-400 153-400 (449)
133 3qml_C Protein SLS1, nucleotid 89.5 3.3 0.00011 37.6 11.0 134 300-442 43-189 (315)
134 1vdy_A Hypothetical protein (R 88.4 1.7 5.9E-05 34.5 7.5 76 414-499 50-134 (140)
135 3g2s_A C-terminal fragment of 88.0 1.4 4.9E-05 35.6 6.9 74 371-444 49-128 (149)
136 1x5b_A Signal transducing adap 87.4 1.9 6.5E-05 35.5 7.5 72 414-495 53-125 (163)
137 1mhq_A ADP-ribosylation factor 86.8 2.4 8.3E-05 34.2 7.7 71 371-441 39-115 (148)
138 3qml_C Protein SLS1, nucleotid 86.8 7.9 0.00027 35.1 11.6 149 245-399 24-189 (315)
139 3ldz_A STAM-1, signal transduc 86.3 1.7 6E-05 34.7 6.5 72 414-495 43-114 (140)
140 2p8q_B Snurportin-1; heat repe 85.3 0.7 2.4E-05 27.4 2.7 38 11-50 2-40 (40)
141 1juq_A ADP-ribosylation factor 85.2 3.2 0.00011 34.4 7.9 72 414-495 51-128 (171)
142 3gs3_A Symplekin, LD45768P; he 85.2 20 0.00069 31.9 21.9 99 77-186 19-117 (257)
143 3g2s_A C-terminal fragment of 84.2 3.3 0.00011 33.5 7.3 72 414-495 49-126 (149)
144 1mhq_A ADP-ribosylation factor 84.2 3.4 0.00012 33.4 7.3 73 414-496 39-117 (148)
145 3o2t_A Symplekin; heat repeat, 83.9 7.9 0.00027 36.8 10.8 118 369-494 62-182 (386)
146 3ldz_A STAM-1, signal transduc 83.9 2 6.9E-05 34.4 5.8 74 371-444 43-116 (140)
147 1juq_A ADP-ribosylation factor 83.4 2.6 9E-05 35.0 6.5 71 371-441 51-127 (171)
148 3o2t_A Symplekin; heat repeat, 82.9 33 0.0011 32.6 18.6 88 88-186 40-127 (386)
149 1vsy_5 Proteasome activator BL 81.7 4.5 0.00016 44.0 9.3 186 161-357 135-365 (997)
150 3gs3_A Symplekin, LD45768P; he 80.4 17 0.00058 32.3 11.1 117 370-494 53-172 (257)
151 1x5b_A Signal transducing adap 80.1 3.3 0.00011 34.1 5.9 71 371-441 53-124 (163)
152 2jak_A Serine/threonine-protei 76.6 17 0.00059 34.4 10.4 81 152-233 167-247 (392)
153 3zyq_A Hepatocyte growth facto 74.8 8.6 0.00029 33.6 7.4 71 414-494 46-117 (226)
154 1dvp_A HRS, hepatocyte growth 72.6 11 0.00037 32.8 7.5 72 414-495 43-115 (220)
155 3zyq_A Hepatocyte growth facto 71.3 2.4 8.4E-05 37.1 3.0 74 73-146 45-118 (226)
156 3ut4_A CTHE_2751, putative unc 70.3 6.9 0.00024 30.7 5.0 94 371-495 32-130 (134)
157 1elk_A Target of MYB1; superhe 70.2 14 0.00047 30.1 7.2 72 414-495 54-130 (157)
158 3fga_B Serine/threonine-protei 69.4 79 0.0027 30.1 14.9 234 112-359 125-368 (403)
159 1dvp_A HRS, hepatocyte growth 64.8 3.8 0.00013 35.7 2.9 74 73-146 42-115 (220)
160 1vdy_A Hypothetical protein (R 64.7 22 0.00074 28.2 6.9 73 371-443 50-131 (140)
161 3l3f_X Protein DOA1, DOA1/UFD3 63.9 35 0.0012 32.0 9.4 133 302-446 180-330 (362)
162 3pst_A Protein DOA1; protein d 63.1 43 0.0015 32.1 9.9 133 302-446 243-393 (425)
163 1vsy_5 Proteasome activator BL 60.3 39 0.0013 36.8 10.3 189 240-444 130-367 (997)
164 3s4w_B Protein FACD2, fanconi 60.0 1.1E+02 0.0038 34.1 13.7 306 75-398 194-548 (1323)
165 3pst_A Protein DOA1; protein d 59.5 27 0.00094 33.4 7.9 104 294-400 271-390 (425)
166 2npp_B PP2A, B subunit, serine 59.0 1.3E+02 0.0046 29.0 18.3 240 110-363 156-405 (449)
167 3gae_A Protein DOA1; UFD3, CDC 58.4 17 0.00058 32.3 6.0 102 296-400 101-218 (253)
168 1wjt_A Transcription elongatio 57.7 12 0.00042 27.8 4.2 40 459-498 47-87 (103)
169 2b6c_A Hypothetical protein EF 57.6 92 0.0031 26.7 12.6 138 246-410 58-198 (220)
170 2xpp_A IWS1, ECU08_0440; trans 57.6 37 0.0013 27.1 7.1 75 404-493 52-134 (145)
171 3l3f_X Protein DOA1, DOA1/UFD3 56.2 26 0.00088 32.9 7.0 103 295-400 209-327 (362)
172 1elk_A Target of MYB1; superhe 55.1 21 0.00071 29.0 5.5 73 371-443 54-131 (157)
173 3gae_A Protein DOA1; UFD3, CDC 52.3 53 0.0018 29.1 8.2 105 170-274 101-219 (253)
174 3jxy_A Alkylpurine DNA glycosy 52.0 1.2E+02 0.004 26.3 11.5 139 247-412 65-207 (232)
175 2jak_A Serine/threonine-protei 49.5 92 0.0031 29.5 9.6 73 113-187 171-244 (392)
176 3nfq_A Transcription factor IW 44.2 72 0.0024 26.1 7.0 77 404-495 67-151 (170)
177 3rru_A TOM1L1 protein; structu 35.1 77 0.0026 25.4 5.8 74 414-497 54-132 (152)
178 4atg_A TAF6; transcription, TF 34.0 1.6E+02 0.0056 24.7 7.9 112 159-271 40-161 (196)
179 2xpp_A IWS1, ECU08_0440; trans 33.5 1.7E+02 0.0058 23.2 7.4 77 318-398 52-135 (145)
180 3vld_A DNA mismatch repair pro 33.1 3.5E+02 0.012 26.4 12.4 184 242-444 30-227 (500)
181 2b6c_A Hypothetical protein EF 30.0 2.6E+02 0.0088 23.8 13.2 139 120-283 59-199 (220)
182 1pqv_S STP-alpha, transcriptio 28.4 92 0.0032 28.5 5.9 37 459-495 38-74 (309)
183 3gjx_B Snurportin-1; transport 27.7 13 0.00043 34.5 -0.0 44 8-52 28-71 (365)
184 1w9c_A CRM1 protein, exportin 27.7 3.6E+02 0.012 24.7 16.2 179 301-495 45-245 (321)
185 3rru_A TOM1L1 protein; structu 26.9 86 0.0029 25.1 4.8 74 371-444 54-132 (152)
186 2g7o_A Protein TRAM; four heli 26.1 65 0.0022 21.8 3.2 20 480-499 50-69 (70)
187 1vsy_4 Proteasome activator BL 23.5 3.2E+02 0.011 28.7 9.7 119 151-271 332-454 (799)
188 3nfq_A Transcription factor IW 23.3 3E+02 0.01 22.4 7.8 79 317-399 66-151 (170)
189 1inz_A EPS15-interacting porte 22.6 2.9E+02 0.0099 21.9 8.0 72 415-495 61-140 (148)
190 4g3b_A Alpha4F3D; alpha helix, 22.1 87 0.003 15.7 2.9 21 21-41 2-22 (26)
191 4atg_A TAF6; transcription, TF 20.8 3.7E+02 0.013 22.5 12.6 128 202-337 41-178 (196)
No 1
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=5.6e-76 Score=607.60 Aligned_cols=518 Identities=46% Similarity=0.748 Sum_probs=404.0
Q ss_pred CCCCCCC-CchHhhhhcCC-CCCchHHhhhhhhHHHHHHHHhhhHHHHhhhhccccCCC-CCccCCCCCchhhhcCCHHH
Q 009636 1 MSLRPNS-KADSRRNKYKV-AVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQ-PLANDVNAPGTAKKLENLPV 77 (530)
Q Consensus 1 ~~~~~~~-~~~~~~~~~k~-~~~~~e~~~~r~~~~~~lRk~~r~~~l~~~R~~~~~~~~-~~~~~~~~~~~~~~~~~l~~ 77 (530)
|+++++. .+++|+++||+ +.+++|+||||+++.++|||+||++.+.|||+.....+. .++..............++.
T Consensus 1 ~~~~~~~~~~~~r~~~~k~~~~~~~e~r~~R~~~~v~lRk~kr~e~l~krR~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (529)
T 3tpo_A 1 MSTNENANLPAARLNRFKNKGKDSTEMRRRRIEVNVELRKAKKDEQMLKRRNVSSFPDDATSPLQENRNNQGTVNWSVED 80 (529)
T ss_dssp -------------------------------------------CCSCSCCCCCC---------------CGGGSSCCHHH
T ss_pred CCCCCCCCCcHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCCcccccChhhhccchhhhHHHHHHH
Confidence 7787776 67899999998 899999999999999999999999999999987432222 12221111111222247899
Q ss_pred HHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHh
Q 009636 78 MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVID 157 (530)
Q Consensus 78 l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~ 157 (530)
+++.++++|++.|+.|+..++++++.+.+++++.+++.|++|.|+++|..++++.++.+|+|+|+|++.++++.+..+++
T Consensus 81 lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~ 160 (529)
T 3tpo_A 81 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVD 160 (529)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999998888999999999999999999987666999999999999999999999999999
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCC----chhHHHHHHHHhhhhccCC
Q 009636 158 HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP----KLSMLRNATWTLSNFCRGK 233 (530)
Q Consensus 158 ~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~----~~~~~~~a~~~L~~L~~~~ 233 (530)
.|++|.|+.++.+++..+++.|+|+|+||+.+++.+|+.+...|++++|+.++.... ...+.+.++|++++++.+.
T Consensus 161 ~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~ 240 (529)
T 3tpo_A 161 GGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK 240 (529)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999995322 2457889999999999987
Q ss_pred -CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHh
Q 009636 234 -PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312 (530)
Q Consensus 234 -~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl 312 (530)
+........+++|.|+.++.+++++++..++|+|++++....+..+.+...|+++.|+.+|.++++.++.+++++|+|+
T Consensus 241 ~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl 320 (529)
T 3tpo_A 241 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 320 (529)
T ss_dssp TTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred cchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHH
Confidence 5556667789999999999999999999999999999999988888899999999999999999999999999999999
Q ss_pred hcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHH
Q 009636 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAW 392 (530)
Q Consensus 313 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~ 392 (530)
+.+++..+..+++.|+++.|+.+|.++ ++.++++|+|+|+|++.+++.+...+++.|+++.|+.++.+++.+++.+|+|
T Consensus 321 ~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~ 399 (529)
T 3tpo_A 321 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAW 399 (529)
T ss_dssp TTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HccchHHHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHH
Confidence 999999999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHH
Q 009636 393 AISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIE 472 (530)
Q Consensus 393 aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~ 472 (530)
+|+|++.+++++++.+|++.|++++|+++|..+|++++..++++|.+++..++... ..+.+..+|+++||+++|+
T Consensus 400 aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~-----~~~~~~~~iee~ggl~~ie 474 (529)
T 3tpo_A 400 AITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG-----ETEKLSIMIEECGGLDKIE 474 (529)
T ss_dssp HHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTT-----CHHHHHHHHHHTTCHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhcc-----ChHHHHHHHHHCCcHHHHH
Confidence 99999998899999999999999999999999999999999999999999887643 3567899999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHhCCCCCCCC---CCCCCCCCCCcccCCCCCCCCCCCCCcC
Q 009636 473 SLQTHDNAEIYEKSVKLLETYWLDDEDET---MPPGDASQPGFGFGGNGNPPAPSGGFNF 529 (530)
Q Consensus 473 ~l~~~~~~~v~~~a~~il~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (530)
.||+|+|++||++|..||++||+++++++ .|++.+ ++|+|+.++ .++|+|+|
T Consensus 475 ~Lq~~~n~~i~~~A~~iie~yf~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~f~f 529 (529)
T 3tpo_A 475 ALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPETTS--EGFAFQVQD---GAPGTFNF 529 (529)
T ss_dssp GGGGCSSHHHHHHHHHHHHHHC--------------------------------------
T ss_pred HHHcCCCHHHHHHHHHHHHHHCCCccccccccCCCCCC--cccccCCCC---CCCCCCCC
Confidence 99999999999999999999998766554 566543 379998665 56799999
No 2
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=5.2e-65 Score=522.55 Aligned_cols=489 Identities=46% Similarity=0.760 Sum_probs=393.4
Q ss_pred hhhHHHHHHHHhhhHHHHhhhhccccCCCCCccCCCCCchhhhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCc
Q 009636 29 REDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPP 108 (530)
Q Consensus 29 r~~~~~~lRk~~r~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~ 108 (530)
|....++.|+++++....+.++....+++....+. .......-..++.+++.++|+|++.|+.|+..+|++++.+++|+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~pp 92 (510)
T 3ul1_B 14 RGSGMLETAAALFERNHMDSPDLGTDDDDLAMADI-GSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPP 92 (510)
T ss_dssp ----------------------------------------CCSSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCC
T ss_pred CCcccHHHHHHHHHhhccCCccccCCccccchhhh-ccccchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCch
Confidence 44456777788887777777766544333211111 11111111378999999999999999999999999999988999
Q ss_pred HHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhC
Q 009636 109 IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAG 188 (530)
Q Consensus 109 ~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~ 188 (530)
++.+++.|++|.|+++|+.++++.+|.+|+|+|+||+.++++.+..+++.|++|.|+.+|.+++..+++.|+|+|+||+.
T Consensus 93 i~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~ 172 (510)
T 3ul1_B 93 IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAG 172 (510)
T ss_dssp HHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999876668999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhhhHhhcCChHHHHHhhcCCC----chhHHHHHHHHhhhhccCC-CCCChhhhhchHHHHHHhhcCCChhHHHHH
Q 009636 189 DSPRCRDLVLSQGGLVPLLAQLNGQP----KLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDA 263 (530)
Q Consensus 189 ~~~~~~~~i~~~~~i~~Ll~ll~~~~----~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a 263 (530)
+++.+|+.+.+.|++++|+.++.... ...+++.++|++++++.+. +........+++|.|+.++.+++++++..+
T Consensus 173 d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A 252 (510)
T 3ul1_B 173 DGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADS 252 (510)
T ss_dssp TCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred CCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHH
Confidence 99999999999999999999995322 2457889999999999987 555666778999999999999999999999
Q ss_pred HHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchh
Q 009636 264 CWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKS 343 (530)
Q Consensus 264 ~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~ 343 (530)
+|+|++++....+..+.+...|+++.|+.+|.+.+..++..++++|+|++.+++..+..+++.|+++.|..+|.++ ++.
T Consensus 253 ~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~ 331 (510)
T 3ul1_B 253 CWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTN 331 (510)
T ss_dssp HHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS-SHH
T ss_pred HHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCC-CHH
Confidence 9999999999888888899999999999999999999999999999999999999999999999999999999998 999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccC
Q 009636 344 IKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV 423 (530)
Q Consensus 344 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~ 423 (530)
+++.|+|+|+|++.+++.+...+++.|+++.|+.++.+++.+++++|+|+|+|++.+++.+++.+|++.|++++|+++|+
T Consensus 332 v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~ 411 (510)
T 3ul1_B 332 IQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLS 411 (510)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGG
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999989999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCCCC--
Q 009636 424 CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDEDET-- 501 (530)
Q Consensus 424 ~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~~~~~~~-- 501 (530)
.+|++++..++++|.++++.+++.. ..+.++.+|+++||+++|+.||+|+|++||++|..||++||+++++++
T Consensus 412 ~~d~~i~~~~L~aL~nil~~~~~~~-----~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~~~~~ 486 (510)
T 3ul1_B 412 AKDTKIIQVILDAISNIFQAAEKLG-----ETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQN 486 (510)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHTTT-----CHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC--------
T ss_pred CCCHHHHHHHHHHHHHHHHHhHhcc-----chHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccccccc
Confidence 9999999999999999999887643 356789999999999999999999999999999999999999776654
Q ss_pred -CCCCCCCCCCcccCCCCCCCCCCCCCcC
Q 009636 502 -MPPGDASQPGFGFGGNGNPPAPSGGFNF 529 (530)
Q Consensus 502 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (530)
.|++.+ ++|.|+.++ .++|+|||
T Consensus 487 ~~~~~~~--~~~~~~~~~---~~~~~~~~ 510 (510)
T 3ul1_B 487 VVPETTS--EGFAFQVQD---GAPGTFNF 510 (510)
T ss_dssp -----------------------------
T ss_pred cCCCCCc--cccccCCCC---CCCCCCCC
Confidence 566543 478998766 57799999
No 3
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=7.6e-65 Score=526.47 Aligned_cols=501 Identities=80% Similarity=1.253 Sum_probs=403.9
Q ss_pred CCCCCCCCchHhhhhcCCCCCchHHhhhhhhHHHHHHHHhhhHHHHhhhhccccCCCCCccCCCCCchhhhcCCHHHHHH
Q 009636 1 MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVA 80 (530)
Q Consensus 1 ~~~~~~~~~~~~~~~~k~~~~~~e~~~~r~~~~~~lRk~~r~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 80 (530)
|+++|+.++++|+++||++++++|+|+||+++.++|||+||++.+.|||++....+.. +............+.++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~k~~~~~~~~r~~r~~~~~~lrk~~r~~~~~~~r~~~~~~~~~-~~~~~~~~~~~~~~~l~~lv~ 81 (528)
T 4b8j_A 3 MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAP-VPASAATGVDKKLESLPAMIG 81 (528)
T ss_dssp ------------------------CCCCC-----------------CCCC-----------------------CHHHHHH
T ss_pred CCCCCCCChHHHHHhhcccCChHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCCcccc-cccccccchhhhHHHHHHHHH
Confidence 6778877889999999999999999999999999999999999999999974322211 000111112223467999999
Q ss_pred hhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCC
Q 009636 81 GVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGA 160 (530)
Q Consensus 81 ~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~ 160 (530)
.|.+++++++..|++.|+++++....++...++..|++|.|+++|.+++++.++..|+|+|++++.++++.+..+++.|+
T Consensus 82 ~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~ 161 (528)
T 4b8j_A 82 GVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGA 161 (528)
T ss_dssp HHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTH
T ss_pred HHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCc
Confidence 99999999999999999999988655788999999999999999998765899999999999999988999999999999
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhh
Q 009636 161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240 (530)
Q Consensus 161 i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~ 240 (530)
++.|+.+|.++++.+++.|+|+|++|+.+.+.++..+...|++++|+.++..+.+..++..++|+|++|+...+......
T Consensus 162 i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~ 241 (528)
T 4b8j_A 162 VPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQ 241 (528)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHH
Confidence 99999999999999999999999999999888999999999999999999667789999999999999999987777778
Q ss_pred hhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhh
Q 009636 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQT 320 (530)
Q Consensus 241 ~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~ 320 (530)
..+++|.|+.++.+.++.++..++|+|++++...+...+.+++.|+++.|+.+|.++++.++..|+++|++++.+++...
T Consensus 242 ~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~ 321 (528)
T 4b8j_A 242 TRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQT 321 (528)
T ss_dssp HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHH
Confidence 89999999999999999999999999999999888888889999999999999999999999999999999999999888
Q ss_pred HHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcC
Q 009636 321 QCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG 400 (530)
Q Consensus 321 ~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 400 (530)
+.+++.|+++.|+.+|.++.++.++..|+|+|+|++.+++..+..+++.|+++.|+.++.+++++++..|+|+|+|++..
T Consensus 322 ~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 322 QCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSG 401 (528)
T ss_dssp HHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 89999999999999998765789999999999999999999999999999999999999999999999999999999998
Q ss_pred CCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCH
Q 009636 401 GTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNA 480 (530)
Q Consensus 401 ~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~ 480 (530)
++++...++++.|+++.|+.+|..++++++..++++|.+++..++......+...+.+...+++.||+++|+.|++|+++
T Consensus 402 ~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~ 481 (528)
T 4b8j_A 402 GSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNN 481 (528)
T ss_dssp SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSH
T ss_pred CCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCH
Confidence 78899999999999999999999999999999999999999988764432222356789999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCCCC
Q 009636 481 EIYEKSVKLLETYWLDDEDETM 502 (530)
Q Consensus 481 ~v~~~a~~il~~~~~~~~~~~~ 502 (530)
+|+++|..++++||..+++++.
T Consensus 482 ~v~~~a~~il~~~~~~e~~~~~ 503 (528)
T 4b8j_A 482 EIYEKAVKILEAYWMDEEDDTM 503 (528)
T ss_dssp HHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHHHHCCCcccccc
Confidence 9999999999999998777663
No 4
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=3.2e-59 Score=484.17 Aligned_cols=491 Identities=54% Similarity=0.825 Sum_probs=424.3
Q ss_pred CchHhhhhcCC-C-CCchHHhhhhhhHHHHHHHHhhhHHHHhhhhcccc---CCCCCccCC---CCCchh-hhcCCHHHH
Q 009636 8 KADSRRNKYKV-A-VDADEGRRRREDNMVEIRKNKREESLQKKRREGLQ---NQQPLANDV---NAPGTA-KKLENLPVM 78 (530)
Q Consensus 8 ~~~~~~~~~k~-~-~~~~e~~~~r~~~~~~lRk~~r~~~l~~~R~~~~~---~~~~~~~~~---~~~~~~-~~~~~l~~l 78 (530)
.++.|++.||+ + ++++|+|+||++..++|||+||++.+.|||+.... .+..++.+. ...... ...+.++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~rk~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 92 (530)
T 1wa5_B 13 VPEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQM 92 (530)
T ss_dssp CCGGGCC-----------CCCCCTTSSCCCCSCCCCCSCCSCCCCC----------------------------CCHHHH
T ss_pred chHHHHHHHhccCCCChHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCccccccccCCchhhhhhhhhhhhhhhHHHHHHH
Confidence 56789999999 8 89999999999999999999999999999997532 111001000 011110 122579999
Q ss_pred HHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhC
Q 009636 79 VAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDH 158 (530)
Q Consensus 79 ~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~ 158 (530)
+..|++++++.+..|+..|+++++....+++..+++.|++|.|+++|.+++++.++..|+|+|++++.++++.+..++..
T Consensus 93 v~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~ 172 (530)
T 1wa5_B 93 TQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDA 172 (530)
T ss_dssp HHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHC
Confidence 99999999999999999999999875567788899999999999999987339999999999999999888999999999
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC-CCCC
Q 009636 159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPP 237 (530)
Q Consensus 159 g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~-~~~~ 237 (530)
|+++.|+.+|.++++.+++.|+|+|++|+.+.+..+..+...|+++.|+.++ .+.+..++..++|+|++|+... +...
T Consensus 173 g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~~~~ 251 (530)
T 1wa5_B 173 DAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCRGKKPQPD 251 (530)
T ss_dssp TCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHh-ccCCHHHHHHHHHHHHHHhCCCCCCCc
Confidence 9999999999999999999999999999999888999999999999999999 5588999999999999999987 6667
Q ss_pred hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCc
Q 009636 238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD 317 (530)
Q Consensus 238 ~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~ 317 (530)
.....+++|.|+.++.+.++.++..++|+|++++...+.....+++.|+++.|+.+|.+.++.++..|+++|++++.+++
T Consensus 252 ~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~ 331 (530)
T 1wa5_B 252 WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGND 331 (530)
T ss_dssp HHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCH
Confidence 77789999999999999999999999999999998888778888899999999999999999999999999999999888
Q ss_pred hhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHh
Q 009636 318 MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNA 397 (530)
Q Consensus 318 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 397 (530)
...+.+++.|+++.|+.+|.++ ++.++..|+|+|+|++.++++.++.+++.|+++.|+.++.++++.++..|+|+|+|+
T Consensus 332 ~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l 410 (530)
T 1wa5_B 332 LQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNA 410 (530)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 8888889999999999999998 999999999999999999899999999999999999999999999999999999999
Q ss_pred hcCCCH--HHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHh
Q 009636 398 TSGGTH--EQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQ 475 (530)
Q Consensus 398 ~~~~~~--~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~ 475 (530)
+..+.+ +...++++.|+++.|+.++...++.++..++++|.+++..++..........++++..+.+.||+++|..|+
T Consensus 411 ~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~ 490 (530)
T 1wa5_B 411 SSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQ 490 (530)
T ss_dssp HHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGG
T ss_pred HhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHH
Confidence 987666 888899999999999999999999999999999999998876532110012466899999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhCCCCCCC
Q 009636 476 THDNAEIYEKSVKLLETYWLDDEDE 500 (530)
Q Consensus 476 ~~~~~~v~~~a~~il~~~~~~~~~~ 500 (530)
+|++++|+++|..+|++||..+++|
T Consensus 491 ~~~~~~v~~~a~~il~~~~~~~~~~ 515 (530)
T 1wa5_B 491 QNENDKIYEKAYKIIETYFGEEEDA 515 (530)
T ss_dssp GCSCHHHHHHHHHHHHHHSSSCC--
T ss_pred cCCCHHHHHHHHHHHHHHCCccccc
Confidence 9999999999999999999876654
No 5
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=1.5e-46 Score=381.71 Aligned_cols=426 Identities=59% Similarity=0.938 Sum_probs=385.4
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHc-CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009636 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRS-GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~-g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (530)
.++.+++.++++++.++..|+..|+++++....+..+.+++. |++|.|+++|.+++++.++..|+++|.+++.++++..
T Consensus 21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 379999999999999999999999999875446677888887 9999999999988349999999999999999888888
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009636 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (530)
Q Consensus 153 ~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~ 232 (530)
..+++.|+++.|+.++.++++.+++.|+|+|++++.+.+..+..+...|+++.|+.++..+.+..++..++|+|++++..
T Consensus 101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~ 180 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence 88899999999999999999999999999999999998888999999999999999995457899999999999999988
Q ss_pred C-CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhH
Q 009636 233 K-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311 (530)
Q Consensus 233 ~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~n 311 (530)
. +........+++|.|+.++.++++.++..++|+|.+++....+....+...|+++.|+.++.+.++.++..|+++|++
T Consensus 181 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 260 (450)
T 2jdq_A 181 KSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 260 (450)
T ss_dssp SSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHH
Confidence 6 555556668999999999999999999999999999998877777888889999999999999999999999999999
Q ss_pred hhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHH
Q 009636 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAA 391 (530)
Q Consensus 312 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~ 391 (530)
++.+.+...+.+++.|+++.|+.++.++ ++.++..|+|+|+|++.+++...+.+++.|+++.|+.++.++++++|..|+
T Consensus 261 l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~ 339 (450)
T 2jdq_A 261 IVTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAA 339 (450)
T ss_dssp HTTSCHHHHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHH
T ss_pred HhhCChHHHHHHHHCccHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHH
Confidence 9998888888888999999999999998 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHH
Q 009636 392 WAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKI 471 (530)
Q Consensus 392 ~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l 471 (530)
|+|+|++.+++++..+.+++.|+++.|+.++..++++++..++++|.+++..++..........++|...|.+.||+++|
T Consensus 340 ~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l 419 (450)
T 2jdq_A 340 WAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKI 419 (450)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHH
Confidence 99999998777888898999999999999999999999999999999999877653211111245789999999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhCCCCCCC
Q 009636 472 ESLQTHDNAEIYEKSVKLLETYWLDDEDE 500 (530)
Q Consensus 472 ~~l~~~~~~~v~~~a~~il~~~~~~~~~~ 500 (530)
..|+++++.+|++.|..+|++||++++++
T Consensus 420 ~~l~~~~~~~v~~~a~~~l~~~~~~~~~~ 448 (450)
T 2jdq_A 420 EFLQSHENQEIYQKAFDLIEHYFGTEDED 448 (450)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHCCC---
T ss_pred HHHHcCCCHHHHHHHHHHHHHHCCccccc
Confidence 99999999999999999999999877654
No 6
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=7.1e-40 Score=342.37 Aligned_cols=366 Identities=15% Similarity=0.122 Sum_probs=318.2
Q ss_pred CHHHHHHhhcCC--ChHHHHHHHHHHHHhhcCCCCCcHHHHH-HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCh-
Q 009636 74 NLPVMVAGVWSN--DSGVQYECTTQFRKLLSIERSPPIEEVI-RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTS- 149 (530)
Q Consensus 74 ~l~~l~~~l~s~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~- 149 (530)
.++.++++|.++ +++++..|++.|..+... .+....++ +.|++|.|+++|++++ +.+++.|+|+|+||+.+++
T Consensus 378 Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~--~~vk~~lv~d~g~Ip~LV~LL~s~d-~~i~~~al~~L~NLt~~~d~ 454 (810)
T 3now_A 378 LAEACRRFLIKPGKDKDIRRWAADGLAYLTLD--AECKEKLIEDKASIHALMDLARGGN-QSCLYGVVTTFVNLCNAYEK 454 (810)
T ss_dssp HHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS--HHHHHHHHHCHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHTTCSCC
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC--cHHHHHHHHccchHHHHHHHhCCCC-hHHHHHHHHHHHHHcCCchh
Confidence 367788888887 899999999999998644 34444555 5899999999999987 8999999999999998652
Q ss_pred ----------------------------hh---HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHh
Q 009636 150 ----------------------------EH---TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVL 198 (530)
Q Consensus 150 ----------------------------~~---~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~ 198 (530)
.. .+.+++.|++|.|+.+++++++.++++|+|+|+||+.+. .+|..+.
T Consensus 455 q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~-~~r~~Vv 533 (810)
T 3now_A 455 QEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLK-ELRGKVV 533 (810)
T ss_dssp CCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSH-HHHHHHH
T ss_pred hhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHHHHHH
Confidence 11 267889999999999999999999999999999999764 5899999
Q ss_pred hcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCC-h--hhhhchHHHHHHhhcCCC-hhHHHHHHHHHHHhccCC
Q 009636 199 SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP-F--DQVSPALPALAHLIHSND-DEVLTDACWALSYLSDGT 274 (530)
Q Consensus 199 ~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~-~--~~~~~~l~~L~~ll~~~d-~~v~~~a~~~l~~l~~~~ 274 (530)
+.|++++|+.++ .+.+...++.|+|+|.+|+....... + ....+++|.|+.+|.++. ...+..++|+|.||+..+
T Consensus 534 ~~Gaip~Lv~LL-~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~ 612 (810)
T 3now_A 534 QEGGVKALLRMA-LEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMN 612 (810)
T ss_dssp HTTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC
T ss_pred HCCCHHHHHHHH-ccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCC
Confidence 999999999999 66678899999999999997642111 1 123568999999998653 344578999999999998
Q ss_pred hHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 009636 275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN 354 (530)
Q Consensus 275 ~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n 354 (530)
++..+.+++.|+++.|+.++.++++.++..|+++++||+.+.+.+...+...|.++.|+.++.+. +..++++|+|+|+|
T Consensus 613 d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~ALan 691 (810)
T 3now_A 613 ESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDE-DEETATACAGALAI 691 (810)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCS-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCC-CHHHHHHHHHHHHH
Confidence 88888899999999999999999999999999999999997765544432379999999999998 99999999999999
Q ss_pred HhcCCHHHHHHHHH-hCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCC---ChHHH
Q 009636 355 ITAGNREQIQAVIE-ANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP---DPRIV 430 (530)
Q Consensus 355 l~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~---~~~~~ 430 (530)
++.+++.+++.+++ .|+++.|+.++.+++.++++.|+|+|.|++.+ +.++..++.+.|++++|+.+++.+ +++++
T Consensus 692 Lt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~ 770 (810)
T 3now_A 692 ITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA-GEEIAKKLFETDIMELLSGLGQLPDDTRAKAR 770 (810)
T ss_dssp HHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHH
T ss_pred HhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHhCcccCcHHHH
Confidence 99988899999998 89999999999999999999999999999985 578899999999999999999755 78999
Q ss_pred HHHHHHHHHHHHhhhh
Q 009636 431 TVCLEGLENILKVGEA 446 (530)
Q Consensus 431 ~~al~~l~~ll~~~~~ 446 (530)
..++++|.++++++.-
T Consensus 771 e~Al~aL~~ll~~g~~ 786 (810)
T 3now_A 771 EVATQCLAAAERYRII 786 (810)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCc
Confidence 9999999999998864
No 7
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=1.9e-39 Score=321.81 Aligned_cols=369 Identities=18% Similarity=0.163 Sum_probs=295.5
Q ss_pred hhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCC-----------HHHHHHHH
Q 009636 70 KKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDY-----------PQLQFEAA 138 (530)
Q Consensus 70 ~~~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~-----------~~i~~~a~ 138 (530)
.+++.++.++..+.+.+++. ..+.|..+... .+....+++.|++|.|+++|+..+. ++++.+|+
T Consensus 29 ~~~~~~~~l~~~~~~~~~~~---~~~~ll~~~~~--~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~ 103 (458)
T 3nmz_A 29 TKVEMVYSLLSMLGTHDKDD---MSRTLLAMSSS--QDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARAS 103 (458)
T ss_dssp ----------------CCHH---HHHHHHHHHSS--TTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHH
T ss_pred chHHHHHHHHHHhcCCCHHH---HHHHHHHHHcC--CcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHH
Confidence 35678899999999888773 33444444322 3444788999999999999997432 79999999
Q ss_pred HHHHHHhcCChhhHHHHHhCCCh----------HHHHHhhCCCC--HH-----HHH-------HHHHHHHhhhCCCchhh
Q 009636 139 WALTNIASGTSEHTKVVIDHGAV----------PIFVKLLYSPS--DD-----VRE-------QAVWALGNIAGDSPRCR 194 (530)
Q Consensus 139 ~~L~~l~~~~~~~~~~~~~~g~i----------~~L~~ll~~~~--~~-----i~~-------~a~~~L~nl~~~~~~~~ 194 (530)
|+|+||+.+.++..+...+.+++ +.+++++.+.. .+ +++ +|+|+|+|++.+ +++|
T Consensus 104 ~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R 182 (458)
T 3nmz_A 104 AALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHR 182 (458)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHH
T ss_pred HHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HHHH
Confidence 99999999999999988888888 66777776542 12 444 999999999766 7799
Q ss_pred hhHhhcCChHHHHHhhcC----------CCchhHHHHHHHHhhhhccCCCCCChhh--hhchHHHHHHhhcCCChhHHHH
Q 009636 195 DLVLSQGGLVPLLAQLNG----------QPKLSMLRNATWTLSNFCRGKPQPPFDQ--VSPALPALAHLIHSNDDEVLTD 262 (530)
Q Consensus 195 ~~i~~~~~i~~Ll~ll~~----------~~~~~~~~~a~~~L~~L~~~~~~~~~~~--~~~~l~~L~~ll~~~d~~v~~~ 262 (530)
+.+.+.|++++|+.++.. ..+..+++.|+|+|.|||.+.+...... ..|++|.|+.+|.+++++++..
T Consensus 183 ~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~ 262 (458)
T 3nmz_A 183 HAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQV 262 (458)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHH
T ss_pred HHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHH
Confidence 999999999999999931 2357789999999999998864332222 4677999999999999999999
Q ss_pred HHHHHHHhccC-ChHHHHHHHHhCcHHHHHHhh-CCCCchhHHHHHHHHhHhhcCCchhhHHHh-hcCchHHHHHhhcCC
Q 009636 263 ACWALSYLSDG-TNDKIQAVIEAGVFPRLAEFL-MHPSPSVLIPALRTVGNIVTGDDMQTQCVI-EYQALPCLLNLLSGN 339 (530)
Q Consensus 263 a~~~l~~l~~~-~~~~~~~~~~~~~l~~L~~lL-~~~~~~~~~~al~~L~nl~~~~~~~~~~~~-~~~~l~~L~~lL~~~ 339 (530)
++|+|.+++.. ++.....+.+.|+++.|+.+| .+.+..++..|+.+|+||+.+++.....+. ..|+++.|+.+|.+.
T Consensus 263 A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~ 342 (458)
T 3nmz_A 263 IASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYR 342 (458)
T ss_dssp HHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCC
Confidence 99999999985 566778888999999999975 557889999999999999985554444555 789999999999887
Q ss_pred Cch---hHHHHHHHHHHHHhc---CCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcC
Q 009636 340 YKK---SIKKEACWTVSNITA---GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQG 413 (530)
Q Consensus 340 ~~~---~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~ 413 (530)
.+. .+++.|+|+|.|++. +++++++.+++.|+++.|+.+|.+++..++++|+|+|.|++.+ ++++...+.+.|
T Consensus 343 ~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~G 421 (458)
T 3nmz_A 343 SQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWDMG 421 (458)
T ss_dssp CSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS-CHHHHHHHHHHT
T ss_pred CCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC-CHHHHHHHHHCC
Confidence 222 499999999999997 7889999999999999999999999999999999999999975 678999999999
Q ss_pred ChHHHHhccCCCChHHHHHHHHHHHHHHHhhh
Q 009636 414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGE 445 (530)
Q Consensus 414 ~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~ 445 (530)
+++.|+.+|.+++++++..++++|.+|+...+
T Consensus 422 ~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 422 AVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp HHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 99999999999999999999999999997653
No 8
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=1.8e-38 Score=327.39 Aligned_cols=368 Identities=25% Similarity=0.375 Sum_probs=327.0
Q ss_pred cCCHHHHHHhhcC-CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChh
Q 009636 72 LENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE 150 (530)
Q Consensus 72 ~~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~ 150 (530)
.+.+|.|+++|.. +++.+|..|+++|.+++++. ......+++.|++|.|+.+|.+++ +.++..|+|+|+||+.++++
T Consensus 118 ~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~-~~~~~~vv~~Gaip~Lv~LL~s~~-~~v~e~A~~aL~nLa~~~~~ 195 (529)
T 3tpo_A 118 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGAGSA 195 (529)
T ss_dssp TTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHH
T ss_pred CCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhccCHH
Confidence 3789999999974 56899999999999999874 456678889999999999999998 99999999999999998899
Q ss_pred hHHHHHhCCChHHHHHhhCCCC-----HHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHH
Q 009636 151 HTKVVIDHGAVPIFVKLLYSPS-----DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWT 225 (530)
Q Consensus 151 ~~~~~~~~g~i~~L~~ll~~~~-----~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~ 225 (530)
.+..+++.|+++.|+.++..++ ..+...++|+|++++.+...........++++.|+.++ .+.+.+++..++|+
T Consensus 196 ~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~a~~a 274 (529)
T 3tpo_A 196 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWA 274 (529)
T ss_dssp HHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHT-TSSCHHHHHHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHh-cCCcHHHHHHHHHH
Confidence 9999999999999999997643 45678999999999987765555555677899999999 88899999999999
Q ss_pred hhhhccCCCC-CChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHH
Q 009636 226 LSNFCRGKPQ-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIP 304 (530)
Q Consensus 226 L~~L~~~~~~-~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~ 304 (530)
|++++..... .......+++|.|+.++.+++..++..++++|++++..++.....+++.|+++.|+.+|.++++.++..
T Consensus 275 L~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~ 354 (529)
T 3tpo_A 275 ISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE 354 (529)
T ss_dssp HHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHH
T ss_pred HHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHH
Confidence 9999987632 233445789999999999999999999999999999998888888999999999999999999999999
Q ss_pred HHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHhCcHHHHHHHHhcCc
Q 009636 305 ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQAVIEANIIGPLVALLENAE 383 (530)
Q Consensus 305 al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~ 383 (530)
|+|+|+|++.+++.+...+++.|+++.|+.++.++ +..++++|+|+|+|++. ++++++..+++.|+++.|+.+|.+.|
T Consensus 355 a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d 433 (529)
T 3tpo_A 355 ATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD 433 (529)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSC
T ss_pred HHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999 99999999999999997 68889999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhcC----C-CHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHh
Q 009636 384 FDIKKEAAWAISNATSG----G-THEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKV 443 (530)
Q Consensus 384 ~~v~~~a~~aL~nl~~~----~-~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~ 443 (530)
++++..++++|.|+... + .......+.+.|+++.|..+..+++.++...|..+|.+.+..
T Consensus 434 ~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~ 498 (529)
T 3tpo_A 434 TKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSV 498 (529)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 99999999999999742 2 233445566889999999999999999999999988877643
No 9
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=9.6e-39 Score=322.52 Aligned_cols=365 Identities=19% Similarity=0.209 Sum_probs=310.8
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhh
Q 009636 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL 196 (530)
Q Consensus 117 ~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~ 196 (530)
.+|.|+.+|.+++ +.++..|+++|.+++.+++..+..+++.|++|.|+++|+++++.++..|+|+|.||+.+++..+..
T Consensus 3 ~l~~lv~~L~s~~-~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 3 TIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp CHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred CHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 4899999999998 899999999999999877888888999999999999999999999999999999999988889999
Q ss_pred HhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhc--------C--------CChhHH
Q 009636 197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH--------S--------NDDEVL 260 (530)
Q Consensus 197 i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~--------~--------~d~~v~ 260 (530)
+.+.|++++|+++|..+.+.++++.++|+|+||+........... |++|.|+.++. + .+..+.
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 999999999999995478899999999999999998443333444 99999999993 2 356777
Q ss_pred HHHHHHHHHhccCChHHHHHHHHh-CcHHHHHHhhCC------CCchhHHHHHHHHhHhhcC------------------
Q 009636 261 TDACWALSYLSDGTNDKIQAVIEA-GVFPRLAEFLMH------PSPSVLIPALRTVGNIVTG------------------ 315 (530)
Q Consensus 261 ~~a~~~l~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~------~~~~~~~~al~~L~nl~~~------------------ 315 (530)
..++|+|+|++.. ++....+.+. |+++.|+.+|.+ .+..+...++.+|.|++..
T Consensus 161 ~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~ 239 (457)
T 1xm9_A 161 FNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN 239 (457)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred HHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence 8999999999987 6677878887 999999999985 4567888899999988631
Q ss_pred --------------------------------CchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH--
Q 009636 316 --------------------------------DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE-- 361 (530)
Q Consensus 316 --------------------------------~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~-- 361 (530)
.+...+.+++.++++.|+.+|.++.++.+++.|+|+|+|++.++..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~ 319 (457)
T 1xm9_A 240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS 319 (457)
T ss_dssp --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcch
Confidence 1223445667788999999998775789999999999999986533
Q ss_pred -HH-HHHH-HhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCCh------HHHHH
Q 009636 362 -QI-QAVI-EANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDP------RIVTV 432 (530)
Q Consensus 362 -~~-~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~------~~~~~ 432 (530)
.+ +..+ +.|++|.|+++|.+++.+++++|+|+|.|++.+ .....++..|+++.|+++|...++ +++..
T Consensus 320 ~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~---~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~ 396 (457)
T 1xm9_A 320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH---PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSS 396 (457)
T ss_dssp HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS---GGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred HHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC---HHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHH
Confidence 23 4445 589999999999999999999999999999984 244566777899999999997653 68889
Q ss_pred HHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCC-CHHHHHHHHHHHHHhCCCCC
Q 009636 433 CLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHD-NAEIYEKSVKLLETYWLDDE 498 (530)
Q Consensus 433 al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~-~~~v~~~a~~il~~~~~~~~ 498 (530)
++++|.+++...+. ....+.++||++.|..|+.+. ++++++.|..+|.+||...+
T Consensus 397 ~l~~l~ni~~~~~~-----------~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~ 452 (457)
T 1xm9_A 397 ACYTVRNLMASQPQ-----------LAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452 (457)
T ss_dssp HHHHHHHHHTTCTH-----------HHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred HHHHHHHHHhcCHH-----------HHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence 99999999865433 578889999999999999999 99999999999999997543
No 10
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=9.5e-39 Score=327.59 Aligned_cols=367 Identities=25% Similarity=0.373 Sum_probs=326.3
Q ss_pred CCHHHHHHhhcC-CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009636 73 ENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151 (530)
Q Consensus 73 ~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~ 151 (530)
+.+|.|+++|++ +++.+|..|+++|.++++++ .+..+.+++.|++|.|+.+|.+++ +.++..|+|+|+||+.++++.
T Consensus 100 G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~-~e~~~~vv~~GaIp~Lv~lL~s~~-~~v~e~A~~aL~nLa~d~~~~ 177 (510)
T 3ul1_B 100 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAF 177 (510)
T ss_dssp THHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHHH
Confidence 689999999985 56899999999999999875 566778899999999999999988 999999999999999988999
Q ss_pred HHHHHhCCChHHHHHhhCCCC-----HHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHh
Q 009636 152 TKVVIDHGAVPIFVKLLYSPS-----DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTL 226 (530)
Q Consensus 152 ~~~~~~~g~i~~L~~ll~~~~-----~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L 226 (530)
+..+.+.|+++.|+.++..++ ..+...++|+|++++.+...........++++.|+.++ .+.+.+++..++|+|
T Consensus 178 r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~A~~aL 256 (510)
T 3ul1_B 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAI 256 (510)
T ss_dssp HHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHH-hcCCHHHHHHHHHHH
Confidence 999999999999999998743 35678899999999987655555555667899999999 788999999999999
Q ss_pred hhhccCCCC-CChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHH
Q 009636 227 SNFCRGKPQ-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPA 305 (530)
Q Consensus 227 ~~L~~~~~~-~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~a 305 (530)
++|+..... .......+++|.|+.++.+.+..++..+++++++++..++.....+++.|+++.|+.+|.+++..++..|
T Consensus 257 ~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A 336 (510)
T 3ul1_B 257 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 336 (510)
T ss_dssp HHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHH
T ss_pred HHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHH
Confidence 999987532 2234457899999999999999999999999999999998888889999999999999999999999999
Q ss_pred HHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHhCcHHHHHHHHhcCch
Q 009636 306 LRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQAVIEANIIGPLVALLENAEF 384 (530)
Q Consensus 306 l~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~ 384 (530)
+|+|+|++.++..+...+++.|+++.|+.++.++ +..++++|+|+|+|++. ++.+++..+++.|+++.|+.+|.+.|+
T Consensus 337 ~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~ 415 (510)
T 3ul1_B 337 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT 415 (510)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCH
T ss_pred HHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCH
Confidence 9999999999999999999999999999999999 99999999999999998 688899999999999999999999999
Q ss_pred hHHHHHHHHHHHhhcC-----CCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHh
Q 009636 385 DIKKEAAWAISNATSG-----GTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKV 443 (530)
Q Consensus 385 ~v~~~a~~aL~nl~~~-----~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~ 443 (530)
+++..++++|.|+... ........+.+.|+++.|..+..+++.++...|..+|.+.+..
T Consensus 416 ~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~ 479 (510)
T 3ul1_B 416 KIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSV 479 (510)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 9999999999999752 1233445566789999999999999999999999988877743
No 11
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=7.6e-37 Score=316.86 Aligned_cols=402 Identities=18% Similarity=0.199 Sum_probs=341.4
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009636 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (530)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (530)
+.++.+++.+.++++.++..|+++|.+++... ......+.+.|++|.|++++.+++ +.++..++.+|.+++.++++.+
T Consensus 101 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~~~~L~~la~~~~~~~ 178 (529)
T 1jdh_A 101 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK 178 (529)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC-TTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cchHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHhCCHHHH
Confidence 68999999999999999999999999998764 455667778999999999999987 8999999999999999889999
Q ss_pred HHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009636 153 KVVIDHGAVPIFVKLLYSP-SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (530)
Q Consensus 153 ~~~~~~g~i~~L~~ll~~~-~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~ 231 (530)
..+.+.|+++.|+.++.+. ....+..++.+|.+++.. +..+..+.+.|+++.|+.++ .+.+..+++.++|+|.+|+.
T Consensus 179 ~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~~L~~l~~ 256 (529)
T 1jdh_A 179 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD 256 (529)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHH-hCCChHHHHHHHHHHHHHhc
Confidence 9999999999999999764 456777889999999864 45788889999999999999 66689999999999999998
Q ss_pred CCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC--CCchhHHHHHHHH
Q 009636 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH--PSPSVLIPALRTV 309 (530)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~~~~~al~~L 309 (530)
..+.. ....+++|.|+.++.+.+++++..++|+|++++..+++....+.+.|+++.|+.++.+ .++.++..|+++|
T Consensus 257 ~~~~~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L 334 (529)
T 1jdh_A 257 AATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 334 (529)
T ss_dssp TCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CChhh--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHH
Confidence 86432 2346899999999999999999999999999999888788889999999999999976 3478999999999
Q ss_pred hHhhcCCch---hhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhH
Q 009636 310 GNIVTGDDM---QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDI 386 (530)
Q Consensus 310 ~nl~~~~~~---~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v 386 (530)
+|++.+++. ....+.+.|+++.|+.+|.++.++.+++.++|+|+|++.++. ....+.+.|+++.|+.++.++++++
T Consensus 335 ~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~~i~~L~~ll~~~~~~v 413 (529)
T 1jdh_A 335 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLREQGAIPRLVQLLVRAHQDT 413 (529)
T ss_dssp HHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-GHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChh-hhHHHHHcCCHHHHHHHHHHHhHHH
Confidence 999886543 345778899999999999988346999999999999998654 4478889999999999999888999
Q ss_pred HHHHHHHHHH--hhcCC------------------CHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhh
Q 009636 387 KKEAAWAISN--ATSGG------------------THEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEA 446 (530)
Q Consensus 387 ~~~a~~aL~n--l~~~~------------------~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~ 446 (530)
|++|+|++.| +..++ .++....+.+.|+++.|+.++.++++.++..+.++|.++....
T Consensus 414 ~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~-- 491 (529)
T 1jdh_A 414 QRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK-- 491 (529)
T ss_dssp C-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSH--
T ss_pred HHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCH--
Confidence 9988888777 32222 3455567889999999999999999999999999999986431
Q ss_pred hhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009636 447 EKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETY 493 (530)
Q Consensus 447 ~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~ 493 (530)
.+...+.+.||++.|..++++++++|+..|..++.++
T Consensus 492 ----------~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 492 ----------EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp ----------HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 2578889999999999999999999999999999864
No 12
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.1e-36 Score=319.97 Aligned_cols=405 Identities=19% Similarity=0.221 Sum_probs=346.0
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009636 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (530)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (530)
+.++.|++.|.++++.++..|+++|.++++.. ......+++.|++|.|+++|.+++ +.++..++.+|.+++.++++.+
T Consensus 98 g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~La~~~~~~~ 175 (644)
T 2z6h_A 98 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK 175 (644)
T ss_dssp THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcCC-HHHHHHHHHHHHHHHhcCcHHH
Confidence 68899999999999999999999999998874 456667778999999999999987 8889889999999998889999
Q ss_pred HHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009636 153 KVVIDHGAVPIFVKLLYSP-SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (530)
Q Consensus 153 ~~~~~~g~i~~L~~ll~~~-~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~ 231 (530)
..+.+.|+++.|+.++.+. ...++..++.+|.+++.. +..+..+.+.|+++.|+.++ .+.+..+++.++|+|.+|+.
T Consensus 176 ~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~~~~l~~~g~l~~L~~ll-~~~~~~~~~~a~~~L~nL~~ 253 (644)
T 2z6h_A 176 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD 253 (644)
T ss_dssp HHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-TTHHHHHHHTTHHHHHHTTT-TCSCHHHHHHHHHHHHHHGG
T ss_pred HHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHH-hcCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999874 467888999999999864 45788999999999999999 66789999999999999998
Q ss_pred CCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC--CchhHHHHHHHH
Q 009636 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP--SPSVLIPALRTV 309 (530)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~~~~~al~~L 309 (530)
..+.. ....+++|.|+.++.+.+++++..++|+|++++..+......+.+.|+++.|+.++.+. .+.++..|+++|
T Consensus 254 ~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL 331 (644)
T 2z6h_A 254 AATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 331 (644)
T ss_dssp GCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHH
Confidence 76332 33468999999999999999999999999999998888888899999999999999863 378999999999
Q ss_pred hHhhcCCch--h-hHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhH
Q 009636 310 GNIVTGDDM--Q-TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDI 386 (530)
Q Consensus 310 ~nl~~~~~~--~-~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v 386 (530)
+||+...+. . ...+++.|+++.|+.+|.++.++.+++.|+|+|+|++.+... ...+++.|+++.|++++.+.+.++
T Consensus 332 ~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~-~~~i~~~~~i~~Lv~lL~~~~~~v 410 (644)
T 2z6h_A 332 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIPRLVQLLVRAHQDT 410 (644)
T ss_dssp HHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG-HHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHH-HHHHHHcCCHHHHHHHHhccchhh
Confidence 999975442 2 334778899999999999873479999999999999987544 478889999999999998865555
Q ss_pred HHH----------------------HHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhh
Q 009636 387 KKE----------------------AAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG 444 (530)
Q Consensus 387 ~~~----------------------a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~ 444 (530)
|++ ++.+|.+++. +......+.+.|+++.|+.+|.+.++.++..++++|.++....
T Consensus 411 r~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~ 488 (644)
T 2z6h_A 411 QRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK 488 (644)
T ss_dssp TTC----------CCSSCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSH
T ss_pred hhHhhhccccchhcccccHHHHHHHHHHHHHHHhc--CHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCH
Confidence 554 5555555554 3355567779999999999999999999999999999987432
Q ss_pred hhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHH------------------HHH--HHHHHHHhCCCCC
Q 009636 445 EAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEI------------------YEK--SVKLLETYWLDDE 498 (530)
Q Consensus 445 ~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v------------------~~~--a~~il~~~~~~~~ 498 (530)
.++..+.+.|+++.|..++.+++++| |.. +..+++.||..+.
T Consensus 489 ------------~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~il~~~~~~~~ 550 (644)
T 2z6h_A 489 ------------EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEP 550 (644)
T ss_dssp ------------HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCCSC
T ss_pred ------------HHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcHhhhcccchHHHHHHHhCCC
Confidence 14788999999999999999999999 444 6778899997653
No 13
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=1.6e-37 Score=324.63 Aligned_cols=403 Identities=15% Similarity=0.137 Sum_probs=332.2
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhcCCC-CCcHHHHHH---cCCHHHHHHhhcCC--CCHHHHHHHHHHHHHHhcCC
Q 009636 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIER-SPPIEEVIR---SGVVPRFVEFLLRE--DYPQLQFEAAWALTNIASGT 148 (530)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~---~g~v~~Lv~ll~~~--~~~~i~~~a~~~L~~l~~~~ 148 (530)
++.|+..++++++.++..|+..|+++.+... .+....+-+ ..+++.|+++|.++ + ++++..|+|+|.+++. .
T Consensus 332 v~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d-~~v~~~AveaLayLS~-~ 409 (810)
T 3now_A 332 VDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKD-KDIRRWAADGLAYLTL-D 409 (810)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCC-SSHHHHHHHHHHHHTT-S
T ss_pred cHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHHhC-C
Confidence 4777777777777788888888888865321 111111111 23477899999887 5 8999999999999999 5
Q ss_pred hhhHHHHH-hCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCc-----------------------------hhh---h
Q 009636 149 SEHTKVVI-DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP-----------------------------RCR---D 195 (530)
Q Consensus 149 ~~~~~~~~-~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~-----------------------------~~~---~ 195 (530)
++.+..++ +.|++|.|+.++++.+..++..|+|+|+||+.+.+ ..+ +
T Consensus 410 ~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~ 489 (810)
T 3now_A 410 AECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRIT 489 (810)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHH
Confidence 66666666 57999999999999999999999999999997542 112 5
Q ss_pred hHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh
Q 009636 196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN 275 (530)
Q Consensus 196 ~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~ 275 (530)
.+++.|+++.|+.++ .++++.+++.++|+|.||+...+........|++|.|+.++.+.++..+..++|+|++++...+
T Consensus 490 ~VveaGaVp~LV~LL-~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~ 568 (810)
T 3now_A 490 VLANEGITTALCALA-KTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITIN 568 (810)
T ss_dssp HHHHTTHHHHHHHHH-TCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHCcCHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCC
Confidence 678899999999999 7889999999999999999765555556678999999999999999999999999999986433
Q ss_pred HHHH--HHHHhCcHHHHHHhhCCCCc-hhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHH
Q 009636 276 DKIQ--AVIEAGVFPRLAEFLMHPSP-SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTV 352 (530)
Q Consensus 276 ~~~~--~~~~~~~l~~L~~lL~~~~~-~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L 352 (530)
.... .....|+++.|+.+|.++.. ..+..|+++|+||+.+++...+.+++.|+++.|..++.++ ++.+++.|+|+|
T Consensus 569 p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~-~~~Vq~~A~~~L 647 (810)
T 3now_A 569 PEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMED-HLYLTRAAAQCL 647 (810)
T ss_dssp HHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSC-CTTHHHHHHHHH
T ss_pred hhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 2111 00123689999999987644 3456899999999999888888899999999999999998 999999999999
Q ss_pred HHHhcCCHHHHHHHHH-hCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHH-cCChHHHHhccCCCChHHH
Q 009636 353 SNITAGNREQIQAVIE-ANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVI-QGCIKPLCDLLVCPDPRIV 430 (530)
Q Consensus 353 ~nl~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~-~~~i~~L~~lL~~~~~~~~ 430 (530)
+|++.++ +....+++ .|.++.|+.++.+.+..+|++|+|+|.|++.+ ++..++.+++ .|+++.|+.++.+++.+++
T Consensus 648 ~NLa~~~-~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~-s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq 725 (810)
T 3now_A 648 CNLVMSE-DVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSV-SVKCCEKILAIASWLDILHTLIANPSPAVQ 725 (810)
T ss_dssp HHHTTSH-HHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH-CHHHHHHHHTSTTHHHHHHHHHTCSSHHHH
T ss_pred HHHhCCh-HHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCC-CHHHHHHHHHHcCCHHHHHHHHCCCCHHHH
Confidence 9999865 45555554 78999999999999999999999999999986 5678889998 8999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcC---CCHHHHHHHHHHHHHhC
Q 009636 431 TVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTH---DNAEIYEKSVKLLETYW 494 (530)
Q Consensus 431 ~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~---~~~~v~~~a~~il~~~~ 494 (530)
..++++|.++...+.. ....+.+.|+++.|..|... .+.++++.|...|+...
T Consensus 726 ~~A~~aL~NL~~~s~e-----------~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll 781 (810)
T 3now_A 726 HRGIVIILNMINAGEE-----------IAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAE 781 (810)
T ss_dssp HHHHHHHHHHHTTCHH-----------HHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHH-----------HHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHH
Confidence 9999999999975432 47788899999999999643 48999999999999864
No 14
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=2.5e-37 Score=312.12 Aligned_cols=363 Identities=15% Similarity=0.176 Sum_probs=303.7
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009636 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 153 (530)
.+|.++..|.++++++|..|+++|++++..+ .+....+++.|++|.|+++|.+++ +.++..|+|+|.||+.++++++.
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~s~~-~~~~~~A~~aL~nLa~~~~~~k~ 80 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKL 80 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHH
Confidence 6799999999999999999999999997542 344558889999999999999887 99999999999999998899999
Q ss_pred HHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc--------CC-------Cchh
Q 009636 154 VVIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN--------GQ-------PKLS 217 (530)
Q Consensus 154 ~~~~~g~i~~L~~ll~-~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~--------~~-------~~~~ 217 (530)
.+++.|++|.|+++|. ++++++++.++|+|+||+.+ +..+..+.+ |++++|+.++. .. .+..
T Consensus 81 ~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~ 158 (457)
T 1xm9_A 81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPE 158 (457)
T ss_dssp HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHH
Confidence 9999999999999999 78899999999999999988 568888888 99999999992 11 3567
Q ss_pred HHHHHHHHhhhhccCCCCCChhhhh-chHHHHHHhhcC------CChhHHHHHHHHHHHhccCC----------------
Q 009636 218 MLRNATWTLSNFCRGKPQPPFDQVS-PALPALAHLIHS------NDDEVLTDACWALSYLSDGT---------------- 274 (530)
Q Consensus 218 ~~~~a~~~L~~L~~~~~~~~~~~~~-~~l~~L~~ll~~------~d~~v~~~a~~~l~~l~~~~---------------- 274 (530)
+++.++|+|+|||............ |++|.|+.++.+ .+..+.+.+++++.+++...
T Consensus 159 v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~ 238 (457)
T 1xm9_A 159 VFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR 238 (457)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccc
Confidence 8889999999999873222223333 999999999985 46678889999999886321
Q ss_pred ----------------------------------hHHHHHHHHhCcHHHHHHhhCCC-CchhHHHHHHHHhHhhcCCchh
Q 009636 275 ----------------------------------NDKIQAVIEAGVFPRLAEFLMHP-SPSVLIPALRTVGNIVTGDDMQ 319 (530)
Q Consensus 275 ----------------------------------~~~~~~~~~~~~l~~L~~lL~~~-~~~~~~~al~~L~nl~~~~~~~ 319 (530)
+...+.+++.|+++.++.+|.+. ++.+++.|+|+|+|++.++...
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~ 318 (457)
T 1xm9_A 239 NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLM 318 (457)
T ss_dssp ---------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSH
T ss_pred cccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcc
Confidence 01122344567788899998764 6889999999999999877543
Q ss_pred h----HHHh-hcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCc------hhHHH
Q 009636 320 T----QCVI-EYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAE------FDIKK 388 (530)
Q Consensus 320 ~----~~~~-~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~------~~v~~ 388 (530)
. +.++ +.|++|.|+.+|.++ +..++++|+|+|+|++.+. ....++..|+++.|+++|..++ .++..
T Consensus 319 ~~~~~~~~v~~~~~l~~Lv~LL~~~-~~~v~~~A~~aL~nls~~~--~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~ 395 (457)
T 1xm9_A 319 SSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRHP--LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILS 395 (457)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSG--GGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHH
T ss_pred hHHHHHHHHHHcCCchHHHHHHhCC-CHhHHHHHHHHHHHHhcCH--HHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHH
Confidence 2 3334 689999999999999 9999999999999998853 4556777789999999998874 36888
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCC-ChHHHHHHHHHHHHHHHhh
Q 009636 389 EAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP-DPRIVTVCLEGLENILKVG 444 (530)
Q Consensus 389 ~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~-~~~~~~~al~~l~~ll~~~ 444 (530)
.++++|.|+..+ ++++...+.+.|+++.|+.++.++ ++++...|.++|.+++...
T Consensus 396 ~~l~~l~ni~~~-~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~ 451 (457)
T 1xm9_A 396 SACYTVRNLMAS-QPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSK 451 (457)
T ss_dssp HHHHHHHHHHTT-CTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSST
T ss_pred HHHHHHHHHHhc-CHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcch
Confidence 999999999886 457888888999999999999999 8999999999999887543
No 15
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=1.2e-35 Score=307.46 Aligned_cols=368 Identities=24% Similarity=0.335 Sum_probs=326.9
Q ss_pred CCHHHHHHhhcCC-ChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009636 73 ENLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151 (530)
Q Consensus 73 ~~l~~l~~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~ 151 (530)
+.+|.|++.|.++ ++.++..|+++|.++++.. ......+++.|++|.|+.+|.+++ +.++..|+|+|++++..++..
T Consensus 130 g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~-~~vr~~A~~aL~~l~~~~~~~ 207 (530)
T 1wa5_B 130 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQTKVVVDADAVPLFIQLLYTGS-VEVKEQAIWALGNVAGDSTDY 207 (530)
T ss_dssp TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCCccc
Confidence 6899999999987 8999999999999998763 345667788999999999999887 999999999999999988889
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009636 152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (530)
Q Consensus 152 ~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~ 231 (530)
+..+...|+++.|+.++.+.++.++..|+|+|++|+.+...........++++.|+.++ .+.+..++..++|+|.+|+.
T Consensus 208 ~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~L~~ 286 (530)
T 1wa5_B 208 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLSD 286 (530)
T ss_dssp HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHHS
T ss_pred hHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHH-cCCCHHHHHHHHHHHHHHhC
Confidence 99999999999999999998999999999999999977622334556678999999999 77789999999999999998
Q ss_pred CCCC-CChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHh
Q 009636 232 GKPQ-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG 310 (530)
Q Consensus 232 ~~~~-~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~ 310 (530)
..+. .......+++|.|+.++.+.++.++..++++|++++...+...+.+++.|+++.|+.+|.++++.++..|+++|+
T Consensus 287 ~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~ 366 (530)
T 1wa5_B 287 GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTIS 366 (530)
T ss_dssp SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 7532 222334589999999999999999999999999999988888888889999999999999999999999999999
Q ss_pred HhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CH--HHHHHHHHhCcHHHHHHHHhcCchhHH
Q 009636 311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NR--EQIQAVIEANIIGPLVALLENAEFDIK 387 (530)
Q Consensus 311 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~--~~~~~l~~~~~i~~L~~ll~~~~~~v~ 387 (530)
+++.+++...+.+++.|+++.|+.+|.++ ++.++..|+|+|+|++.+ .+ +....+++.|+++.|+.++.+.++.++
T Consensus 367 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~ 445 (530)
T 1wa5_B 367 NITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 445 (530)
T ss_dssp HHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHH
T ss_pred HHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHH
Confidence 99998888888888999999999999988 999999999999999984 55 788889999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCH----------HHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhh
Q 009636 388 KEAAWAISNATSGGTH----------EQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG 444 (530)
Q Consensus 388 ~~a~~aL~nl~~~~~~----------~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~ 444 (530)
..|+++|.+++..+.. ..+..+.+.|+++.|..++.++++.++..+..+|.+++...
T Consensus 446 ~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~ 512 (530)
T 1wa5_B 446 EVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEE 512 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcc
Confidence 9999999999875321 24567788899999999999999999999999999888543
No 16
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=6.2e-36 Score=303.52 Aligned_cols=366 Identities=25% Similarity=0.319 Sum_probs=324.0
Q ss_pred CCHHHHHHhhcCC-ChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009636 73 ENLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151 (530)
Q Consensus 73 ~~l~~l~~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~ 151 (530)
+.++.+++.|.++ ++.++..|+++|.+++... .+....+++.|++|.|+++|.+++ +.++..|+++|++++..+++.
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~~~-~~vr~~a~~~L~~l~~~~~~~ 141 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGN-SLQTRIVIQAGAVPIFIELLSSEF-EDVQEQAVWALGNIAGDSTMC 141 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHhCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHccCCHHH
Confidence 4689999999988 8999999999999998763 345667778999999999999987 999999999999999988889
Q ss_pred HHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCC-chhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhh
Q 009636 152 TKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDS-PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF 229 (530)
Q Consensus 152 ~~~~~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~-~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L 229 (530)
+..+++.|+++.|+.++.+ .+..++..++|+|++++.+. +..+..+ ..++++.|+.++ .+.+..++..++|+|.++
T Consensus 142 ~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l-~~~~~~v~~~a~~~L~~l 219 (450)
T 2jdq_A 142 RDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAK-VSPCLNVLSWLL-FVSDTDVLADACWALSYL 219 (450)
T ss_dssp HHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGG-TGGGHHHHHHHT-TCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHHH-ccCCHHHHHHHHHHHHHH
Confidence 9999999999999999986 78999999999999999765 4333333 378999999999 678899999999999999
Q ss_pred ccCCC-CCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHH
Q 009636 230 CRGKP-QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRT 308 (530)
Q Consensus 230 ~~~~~-~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~ 308 (530)
+...+ ........+++|.|+.++.+.++.++..++++|++++...+...+.+.+.|+++.|+.++.++++.++..|+++
T Consensus 220 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~ 299 (450)
T 2jdq_A 220 SDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWT 299 (450)
T ss_dssp TSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHH
Confidence 98752 22233446899999999999999999999999999999888777778888999999999999999999999999
Q ss_pred HhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHhCcHHHHHHHHhcCchhHH
Q 009636 309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQAVIEANIIGPLVALLENAEFDIK 387 (530)
Q Consensus 309 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 387 (530)
|++++.+++...+.+++.|+++.|+.+|.++ ++.+|..|+|+|+|++.+ +++..+.+++.|+++.|+.++.+++++++
T Consensus 300 L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 378 (450)
T 2jdq_A 300 ISNITAGNRAQIQTVIDANIFPALISILQTA-EFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIV 378 (450)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHH
Confidence 9999998888888888899999999999988 999999999999999985 78888889999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCH----------HHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHh
Q 009636 388 KEAAWAISNATSGGTH----------EQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKV 443 (530)
Q Consensus 388 ~~a~~aL~nl~~~~~~----------~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~ 443 (530)
..|+++|.+++..+.. ..+..+.+.|+++.|..++.++++.++..++.+|.+++..
T Consensus 379 ~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 444 (450)
T 2jdq_A 379 QVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGT 444 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCc
Confidence 9999999999875322 2456777889999999999988999999999999998854
No 17
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=9.2e-36 Score=308.29 Aligned_cols=367 Identities=24% Similarity=0.326 Sum_probs=327.4
Q ss_pred CCHHHHHHhhcCCC-hHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009636 73 ENLPVMVAGVWSND-SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151 (530)
Q Consensus 73 ~~l~~l~~~l~s~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~ 151 (530)
+.+|.|++.|.+++ +.++..|+++|.++++.. ......+++.|++|.|+.+|.+++ +.++..|+|+|++++..++..
T Consensus 117 g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~aL~~l~~~~~~~ 194 (528)
T 4b8j_A 117 GVVPRFVQFLTREDFPQLQFEAAWALTNIASGT-SENTKVVIDHGAVPIFVKLLGSSS-DDVREQAVWALGNVAGDSPKC 194 (528)
T ss_dssp TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHTCHHH
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHhCCcHHHHHHHhcCCC-HHHHHHHHHHHHHHhCCChhh
Confidence 68999999999887 999999999999998763 456677888999999999999987 999999999999999988889
Q ss_pred HHHHHhCCChHHHHHhh-CCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhc
Q 009636 152 TKVVIDHGAVPIFVKLL-YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC 230 (530)
Q Consensus 152 ~~~~~~~g~i~~L~~ll-~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~ 230 (530)
+..+...|+++.|+.++ .+.++.++..++|+|++++...+.. ......++++.|+.++ .+.+..++..++|+|++++
T Consensus 195 ~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~aL~~l~ 272 (528)
T 4b8j_A 195 RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQP-SFEQTRPALPALARLI-HSNDEEVLTDACWALSYLS 272 (528)
T ss_dssp HHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCC-CHHHHTTHHHHHHHHT-TCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999 5678999999999999999876533 3445678999999999 7889999999999999999
Q ss_pred cCCCCC-ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC-CchhHHHHHHH
Q 009636 231 RGKPQP-PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP-SPSVLIPALRT 308 (530)
Q Consensus 231 ~~~~~~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~~~~al~~ 308 (530)
...+.. ......++++.|+.++.++++.++..++++|++++...+...+.+++.|+++.|+.+|.++ ++.++..|+++
T Consensus 273 ~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~ 352 (528)
T 4b8j_A 273 DGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWT 352 (528)
T ss_dssp SSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHH
Confidence 775322 2334568999999999999999999999999999998888888899999999999999998 99999999999
Q ss_pred HhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHhCcHHHHHHHHhcCchhHH
Q 009636 309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQAVIEANIIGPLVALLENAEFDIK 387 (530)
Q Consensus 309 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 387 (530)
|+|++.+++.....+++.|+++.|+.+|.++ ++.++..|+|+|+|++.+ +++....+++.|+++.|+.++...+++++
T Consensus 353 L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~ 431 (528)
T 4b8j_A 353 ISNITAGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIV 431 (528)
T ss_dssp HHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHH
T ss_pred HHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHH
Confidence 9999998888888889999999999999998 999999999999999985 78999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCH----------HHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhh
Q 009636 388 KEAAWAISNATSGGTH----------EQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG 444 (530)
Q Consensus 388 ~~a~~aL~nl~~~~~~----------~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~ 444 (530)
..++++|.+++..+.. .....+.+.|+++.|..+..+.++++...+..++.+++...
T Consensus 432 ~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~e 498 (528)
T 4b8j_A 432 TVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDE 498 (528)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence 9999999999874322 35667778899999999999999999999999998877543
No 18
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=8.3e-36 Score=301.91 Aligned_cols=365 Identities=18% Similarity=0.194 Sum_probs=303.6
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC-Chhh
Q 009636 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASG-TSEH 151 (530)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~-~~~~ 151 (530)
..++.++++|.++++++|..|+++|.+++... .+....+++.|+||.|+++|.+++ +.++..|+|+|.||+.+ ++++
T Consensus 48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~-~~~k~~V~~~G~Ip~LV~LL~s~~-~~vq~~Aa~AL~nLa~~~~~~n 125 (584)
T 3l6x_A 48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRN-DKVKTDVRKLKGIPVLVGLLDHPK-KEVHLGACGALKNISFGRDQDN 125 (584)
T ss_dssp CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHGGGCSS-HHHHHHHHHHHHHHTSSSCHHH
T ss_pred ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCcHHHHHHHCCCC-HHHHHHHHHHHHHHHccCCHHH
Confidence 48999999999999999999999999998654 567778889999999999999988 99999999999999985 6899
Q ss_pred HHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc-----------------CC
Q 009636 152 TKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN-----------------GQ 213 (530)
Q Consensus 152 ~~~~~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~-----------------~~ 213 (530)
+..+++.|+|+.|+.+|.+ .+.++++.++++|+||+.. +..+..+.. +++++|++++. ..
T Consensus 126 k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~ 203 (584)
T 3l6x_A 126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHI 203 (584)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CC
T ss_pred HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhhHHHHh-ccHHHHHHHHhccccccccccccccccccc
Confidence 9999999999999999987 6788999999999999975 457777775 57999999762 23
Q ss_pred CchhHHHHHHHHhhhhccCCCC-CChhh-hhchHHHHHHhhcC------CChhHHHHHHHHHHHhccCChHH--------
Q 009636 214 PKLSMLRNATWTLSNFCRGKPQ-PPFDQ-VSPALPALAHLIHS------NDDEVLTDACWALSYLSDGTNDK-------- 277 (530)
Q Consensus 214 ~~~~~~~~a~~~L~~L~~~~~~-~~~~~-~~~~l~~L~~ll~~------~d~~v~~~a~~~l~~l~~~~~~~-------- 277 (530)
.+..++.+++|+|.||+...+. ..... ..|+++.|+.++.+ .+...+++++|+|.||+......
T Consensus 204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~ 283 (584)
T 3l6x_A 204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ 283 (584)
T ss_dssp CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 3679999999999999987633 22222 36778899999874 46789999999999998652111
Q ss_pred -----------------HHHHHHhCcHHHHHHhhC-CCCchhHHHHHHHHhHhhcCCchh----hHHHhhcCchHHHHHh
Q 009636 278 -----------------IQAVIEAGVFPRLAEFLM-HPSPSVLIPALRTVGNIVTGDDMQ----TQCVIEYQALPCLLNL 335 (530)
Q Consensus 278 -----------------~~~~~~~~~l~~L~~lL~-~~~~~~~~~al~~L~nl~~~~~~~----~~~~~~~~~l~~L~~l 335 (530)
+..+.+.++++.++.+|. +.++.+++.|+++|.||+.+.... ...+.+.++++.|+.+
T Consensus 284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L 363 (584)
T 3l6x_A 284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL 363 (584)
T ss_dssp ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence 112233356778889995 467899999999999999876322 2234467899999999
Q ss_pred hcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC--------chhHHHHHHHHHHHhhcCCCHHHHH
Q 009636 336 LSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--------EFDIKKEAAWAISNATSGGTHEQIK 407 (530)
Q Consensus 336 L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--------~~~v~~~a~~aL~nl~~~~~~~~~~ 407 (530)
|.++ +..+++.|+|+|+||+.+.. .+.++..|+++.|+.+|.++ +.++...|+++|.|++.. ++++.+
T Consensus 364 L~s~-~~~v~~~A~~aL~nLs~~~~--~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~-~~~~~~ 439 (584)
T 3l6x_A 364 LTNE-HERVVKAASGALRNLAVDAR--NKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAE-NLEAAK 439 (584)
T ss_dssp GGCS-CHHHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTT-CHHHHH
T ss_pred HcCC-CHHHHHHHHHHHHHHhCChh--HHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcC-CHHHHH
Confidence 9999 99999999999999998643 23455789999999999876 357899999999999876 679999
Q ss_pred HHHHcCChHHHHhccCCC--ChHHHHHHHHHHHHHHHhhh
Q 009636 408 FLVIQGCIKPLCDLLVCP--DPRIVTVCLEGLENILKVGE 445 (530)
Q Consensus 408 ~l~~~~~i~~L~~lL~~~--~~~~~~~al~~l~~ll~~~~ 445 (530)
.+.+.|+++.|+.++.+. .+.++..|.++|+++..+.+
T Consensus 440 ~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~e 479 (584)
T 3l6x_A 440 KLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE 479 (584)
T ss_dssp HHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHH
T ss_pred HHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHH
Confidence 999999999999999986 88999999999999986543
No 19
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=1e-33 Score=303.75 Aligned_cols=405 Identities=19% Similarity=0.212 Sum_probs=340.6
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009636 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (530)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (530)
+.++.|++.|+++++.++..|+++|.+++... ......+.+.|+++.|+.+|.+++ ..++..++.+|.+++.++++.+
T Consensus 234 g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~v~~~g~v~~Lv~lL~~~~-~~v~~~a~~aL~~La~~~~e~~ 311 (780)
T 2z6g_A 234 GGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK 311 (780)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC-hhhHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCChHHH
Confidence 68899999999999999999999999998774 455666678999999999999877 8999999999999998889999
Q ss_pred HHHHhCCChHHHHHhhCCCC-HHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009636 153 KVVIDHGAVPIFVKLLYSPS-DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (530)
Q Consensus 153 ~~~~~~g~i~~L~~ll~~~~-~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~ 231 (530)
..+.+.|+++.|+.++++.+ ...+..++.+|.+++... ..+..+...|+++.|+.++ .+.+..+++.++|+|.+|+.
T Consensus 312 ~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~g~l~~Ll~lL-~~~~~~~~~~a~~~L~~L~~ 389 (780)
T 2z6g_A 312 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD 389 (780)
T ss_dssp HHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTST-THHHHHHHTTHHHHHGGGT-TCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCh-HHHHHHHHhchHHHHHHHH-cCCchHHHHHHHHHHHHHhc
Confidence 99999999999999998754 556778899999999754 4788888999999999999 66788999999999999998
Q ss_pred CCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC-C-chhHHHHHHHH
Q 009636 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP-S-PSVLIPALRTV 309 (530)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~-~~~~~~al~~L 309 (530)
..+. .....++++.|+.++.+.++.++..++|+|++++.........+++.|+++.|+.+|.+. + ..++..|+++|
T Consensus 390 ~~~~--~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL 467 (780)
T 2z6g_A 390 AATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 467 (780)
T ss_dssp TCTT--CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 7633 223468999999999999999999999999999998888888899999999999999863 3 38999999999
Q ss_pred hHhhcCCchh---hHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchh-
Q 009636 310 GNIVTGDDMQ---TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFD- 385 (530)
Q Consensus 310 ~nl~~~~~~~---~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~- 385 (530)
+||+...... ...+...++++.|+.+|.++..+.+++.|+|+|+|++.++ .....+.+.|+++.|++++.+++++
T Consensus 468 ~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~ 546 (780)
T 2z6g_A 468 RHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLVRAHQDT 546 (780)
T ss_dssp HHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSH-HHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCH-HHHHHHHHCCCHHHHHHHHHhcchhH
Confidence 9998755432 3467788999999999998834599999999999999864 4447888999999999999876544
Q ss_pred ---------------------HHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhh
Q 009636 386 ---------------------IKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG 444 (530)
Q Consensus 386 ---------------------v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~ 444 (530)
++..++.+|.+++. +++....+.+.|+++.|+.+|.++++.++..++.+|.++....
T Consensus 547 ~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~ 624 (780)
T 2z6g_A 547 QRRTSMGGTQQQFVEGVRMEEIVEACTGALHILAR--DIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK 624 (780)
T ss_dssp HHTTC------CCSTTCCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSH
T ss_pred HHHHhhccccchhhcccChHHHHHHHHHHHHHHhc--ChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCH
Confidence 45556667777765 4566667889999999999999999999999999999997432
Q ss_pred hhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHH--------------------HHHHHHHhCCCCC
Q 009636 445 EAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEK--------------------SVKLLETYWLDDE 498 (530)
Q Consensus 445 ~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~--------------------a~~il~~~~~~~~ 498 (530)
.++..|.+.|+++.|..|+.+++++|+.. +..++..||..++
T Consensus 625 ------------~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~~~~~~~l~~~ll~~l~~~~~ 686 (780)
T 2z6g_A 625 ------------EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEP 686 (780)
T ss_dssp ------------HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHC-----
T ss_pred ------------HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHhhhccccHHHHHHHHhCCC
Confidence 25788999999999999999999999554 5567777776543
No 20
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=1.4e-34 Score=292.97 Aligned_cols=366 Identities=18% Similarity=0.205 Sum_probs=303.3
Q ss_pred HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCC-Cch
Q 009636 114 RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGD-SPR 192 (530)
Q Consensus 114 ~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~-~~~ 192 (530)
..+.+|.|+.+|.+++ +.++..|+++|.+++..+.+++..+++.|+||.|+++|.+++..+++.|+|+|.||+.. ++.
T Consensus 46 ~~~~i~~LV~~L~s~~-~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~ 124 (584)
T 3l6x_A 46 RQPELPEVIAMLGFRL-DAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQD 124 (584)
T ss_dssp CCCCHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHH
T ss_pred ccccHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHH
Confidence 3578999999999988 99999999999999998999999999999999999999999999999999999999985 678
Q ss_pred hhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhc------------------C
Q 009636 193 CRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH------------------S 254 (530)
Q Consensus 193 ~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~------------------~ 254 (530)
.+..+.+.|++++|+.+|....+.++++.++++|++|+..... ......+++|.|+.++. .
T Consensus 125 nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~-k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~ 203 (584)
T 3l6x_A 125 NKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSI-KMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHI 203 (584)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGG-HHHHHHHTHHHHHHHTHHHHHCCC----------CC
T ss_pred HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchh-hHHHHhccHHHHHHHHhccccccccccccccccccc
Confidence 9999999999999999996556889999999999999986433 33334678999998761 2
Q ss_pred CChhHHHHHHHHHHHhccCChHHHHHHHH-hCcHHHHHHhhCC------CCchhHHHHHHHHhHhhcCCc----------
Q 009636 255 NDDEVLTDACWALSYLSDGTNDKIQAVIE-AGVFPRLAEFLMH------PSPSVLIPALRTVGNIVTGDD---------- 317 (530)
Q Consensus 255 ~d~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~l~~L~~lL~~------~~~~~~~~al~~L~nl~~~~~---------- 317 (530)
.++.++.++.++|.||+..+++..+.+.+ .|+++.|+.++.+ .+...++.|+++|.||+....
T Consensus 204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~ 283 (584)
T 3l6x_A 204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ 283 (584)
T ss_dssp CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 36799999999999999988776666776 4667899999864 466789999999999986521
Q ss_pred ---------------hhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCH---HHHHHH-HHhCcHHHHHHH
Q 009636 318 ---------------MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR---EQIQAV-IEANIIGPLVAL 378 (530)
Q Consensus 318 ---------------~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~---~~~~~l-~~~~~i~~L~~l 378 (530)
...+.+.+.++++.|+.+|....++.+++.|+|+|.|++.+.. ...+.. .+.++++.|+++
T Consensus 284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L 363 (584)
T 3l6x_A 284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL 363 (584)
T ss_dssp ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence 1112223446678889999654488999999999999998652 223333 357889999999
Q ss_pred HhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCC--------ChHHHHHHHHHHHHHHHhhhhhhhc
Q 009636 379 LENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP--------DPRIVTVCLEGLENILKVGEAEKNL 450 (530)
Q Consensus 379 l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~--------~~~~~~~al~~l~~ll~~~~~~~~~ 450 (530)
|.+++..+++.|+|+|.||+.+.. . +.++..|+++.|+.+|... ..+++..++++|.+++...+.
T Consensus 364 L~s~~~~v~~~A~~aL~nLs~~~~--~-~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~---- 436 (584)
T 3l6x_A 364 LTNEHERVVKAASGALRNLAVDAR--N-KELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLE---- 436 (584)
T ss_dssp GGCSCHHHHHHHHHHHHHHHTTCS--C-HHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHH----
T ss_pred HcCCCHHHHHHHHHHHHHHhCChh--H-HHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHH----
Confidence 999999999999999999998653 2 2345789999999999876 357888999999999866543
Q ss_pred CCCCchhhHHHhhhhccHHHHHHHhcCC--CHHHHHHHHHHHHHhCC
Q 009636 451 GNTDVNVFTQMIDDAEGLEKIESLQTHD--NAEIYEKSVKLLETYWL 495 (530)
Q Consensus 451 ~~~~~~~~~~~l~~~~~~~~l~~l~~~~--~~~v~~~a~~il~~~~~ 495 (530)
....+.+.|++..|..|..+. .+.+.+.|..++..+|.
T Consensus 437 -------~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 437 -------AAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp -------HHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred -------HHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 266777899999999998765 89999999999998774
No 21
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=1.2e-34 Score=287.36 Aligned_cols=327 Identities=17% Similarity=0.169 Sum_probs=277.0
Q ss_pred hcCCHHHHHHhhcCC------------ChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCH----------HHHHHhhcCC
Q 009636 71 KLENLPVMVAGVWSN------------DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVV----------PRFVEFLLRE 128 (530)
Q Consensus 71 ~~~~l~~l~~~l~s~------------~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v----------~~Lv~ll~~~ 128 (530)
+-+.+|.|+++|+.. +++++++|+++|.+++++. .+..+...+.|++ +.+++++.+.
T Consensus 68 ~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 146 (458)
T 3nmz_A 68 QSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQ-PDDKRGRREIRVLHLLEQIRAYCETCWEWQEAH 146 (458)
T ss_dssp HHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHS-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccC-cchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhh
Confidence 448999999999963 3699999999999999986 5566666677777 7777888765
Q ss_pred C-CHH-----HHH-------HHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-----------CCHHHHHHHHHHHH
Q 009636 129 D-YPQ-----LQF-------EAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-----------PSDDVREQAVWALG 184 (530)
Q Consensus 129 ~-~~~-----i~~-------~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-----------~~~~i~~~a~~~L~ 184 (530)
. ..+ ++. +|+|+|.|++. ++++++.+++.|+++.|+.+|.. .++.++..|+|+|.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~ 225 (458)
T 3nmz_A 147 EPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALT 225 (458)
T ss_dssp SSSSCCCSCC--CCCTTTTHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred ccccccccCCccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHH
Confidence 2 112 433 89999999977 69999999999999999999941 34678999999999
Q ss_pred hhhCCCchhhhhHh-hcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC--CCCChhhhhchHHHHHHhh-cCCChhHH
Q 009636 185 NIAGDSPRCRDLVL-SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK--PQPPFDQVSPALPALAHLI-HSNDDEVL 260 (530)
Q Consensus 185 nl~~~~~~~~~~i~-~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~--~~~~~~~~~~~l~~L~~ll-~~~d~~v~ 260 (530)
||+.+.+..+..+. ..|++++|+.+| .+.+.+++..++|+|.||+... .........|++|.|+.+| .+.+..++
T Consensus 226 nLa~~~~~~k~~i~~~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~ 304 (458)
T 3nmz_A 226 NLTFGDVANKATLCSMKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTL 304 (458)
T ss_dssp HHHTTCHHHHHHHHHCHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHH
T ss_pred HHhCCCcccHHHHHHcCCcHHHHHHHH-hCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHH
Confidence 99988876666665 456699999999 6889999999999999999852 2333445579999999975 55688999
Q ss_pred HHHHHHHHHhccCChHHHHHHH-HhCcHHHHHHhhCCCCc----hhHHHHHHHHhHhhc---CCchhhHHHhhcCchHHH
Q 009636 261 TDACWALSYLSDGTNDKIQAVI-EAGVFPRLAEFLMHPSP----SVLIPALRTVGNIVT---GDDMQTQCVIEYQALPCL 332 (530)
Q Consensus 261 ~~a~~~l~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~----~~~~~al~~L~nl~~---~~~~~~~~~~~~~~l~~L 332 (530)
..++.+|++|+...++....+. ..|+++.|+.+|.+.+. .++..|+++|.|++. +++...+.+++.|+++.|
T Consensus 305 ~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~L 384 (458)
T 3nmz_A 305 KSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTL 384 (458)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHH
Confidence 9999999999985544444455 78999999999998764 489999999999997 788888899999999999
Q ss_pred HHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCC
Q 009636 333 LNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG 401 (530)
Q Consensus 333 ~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 401 (530)
+.+|.++ +..++++|+|+|+|++.+++++...+++.|+++.|+.++.+++.++++.|+++|.||+.+.
T Consensus 385 v~LL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 385 LQHLKSH-SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHSSCS-CHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHcCC-ChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 9999998 8999999999999999889999999999999999999999999999999999999999864
No 22
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=1.5e-33 Score=292.07 Aligned_cols=402 Identities=17% Similarity=0.145 Sum_probs=337.2
Q ss_pred CCHHHHHHhhcC-CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009636 73 ENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151 (530)
Q Consensus 73 ~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~ 151 (530)
+.++.+++.|.+ ++++++..|+..|+++... ......+.+.|++|.|+++|.+++ +.++..|+++|.+++..++..
T Consensus 59 ~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~ 135 (529)
T 1jdh_A 59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA 135 (529)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTH
T ss_pred chHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcch
Confidence 468999999975 4899999999999998654 456778889999999999999988 999999999999999977778
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009636 152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (530)
Q Consensus 152 ~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~ 231 (530)
+..+.+.|+++.|+.++.++++.++..++.+|.+++..++..+..+...|+++.|+.++....+......++.+|.+++.
T Consensus 136 ~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 215 (529)
T 1jdh_A 136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 215 (529)
T ss_dssp HHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc
Confidence 88888999999999999999999999999999999998888899999999999999999766677788889999999997
Q ss_pred CCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhH
Q 009636 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311 (530)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~n 311 (530)
...........++++.|+.++.+.++.++..++|++.+++....... ...++++.|+.++.+.++.++..|+++|++
T Consensus 216 ~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 292 (529)
T 1jdh_A 216 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSN 292 (529)
T ss_dssp STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 65444445557899999999999999999999999999997654321 123789999999999999999999999999
Q ss_pred hhcCCchhhHHHhhcCchHHHHHhhcCCC-chhHHHHHHHHHHHHhcCCHH---HHHHHHHhCcHHHHHHHHhcCc-hhH
Q 009636 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKSIKKEACWTVSNITAGNRE---QIQAVIEANIIGPLVALLENAE-FDI 386 (530)
Q Consensus 312 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~---~~~~l~~~~~i~~L~~ll~~~~-~~v 386 (530)
++.+++.....+.+.|+++.|+.++.+.. ++.++..|+++|+|++.+++. ....+.+.|+++.|+.++.+++ +.+
T Consensus 293 L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v 372 (529)
T 1jdh_A 293 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 372 (529)
T ss_dssp HTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred HhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHH
Confidence 99988878888999999999999997631 478999999999999886433 4567888999999999999876 599
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHH----------------------HHHhh
Q 009636 387 KKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLEN----------------------ILKVG 444 (530)
Q Consensus 387 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~----------------------ll~~~ 444 (530)
+..++|+|.|++.+. +....+.+.|+++.|+.++...+++++..+.|++.+ +....
T Consensus 373 ~~~a~~~l~nl~~~~--~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~ 450 (529)
T 1jdh_A 373 IKATVGLIRNLALCP--ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV 450 (529)
T ss_dssp HHHHHHHHHHHTTSG--GGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHhcCh--hhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCc
Confidence 999999999999853 445788899999999999987777776655555544 33221
Q ss_pred hhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009636 445 EAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW 494 (530)
Q Consensus 445 ~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~ 494 (530)
..+..+.+.|+++.|..+..+++++++..|...+.++.
T Consensus 451 ------------~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~ 488 (529)
T 1jdh_A 451 ------------HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA 488 (529)
T ss_dssp ------------HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred ------------hHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHh
Confidence 12566788999999999999999999999999988865
No 23
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.2e-32 Score=287.88 Aligned_cols=403 Identities=17% Similarity=0.163 Sum_probs=341.5
Q ss_pred CCHHHHHHhhcCC-ChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009636 73 ENLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151 (530)
Q Consensus 73 ~~l~~l~~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~ 151 (530)
+.++.+++.|.++ +++++..|+.+|+++... ......+.+.|+++.|+++|.+++ +.++..|+++|.+++...+..
T Consensus 56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nL~~~~~~~ 132 (644)
T 2z6h_A 56 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA 132 (644)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS--HHHHHHHHTTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSTTH
T ss_pred ChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--hhhHHHHHHcCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHhCcchh
Confidence 4689999999865 899999999999987654 346778888999999999999988 999999999999999977778
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009636 152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (530)
Q Consensus 152 ~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~ 231 (530)
+..+++.|+++.|+.+|.++++.++..++.+|.+++...+..+..+.+.|+++.|+.++........+..++.+|.+|+.
T Consensus 133 ~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~ 212 (644)
T 2z6h_A 133 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 212 (644)
T ss_dssp HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc
Confidence 88888999999999999999898898889999999987788899999999999999999666667888999999999997
Q ss_pred CCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhH
Q 009636 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311 (530)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~n 311 (530)
...........++++.|+.++.+.+..++..++|+|.+++...... ....++++.|+.++.+.++.++..|+++|++
T Consensus 213 ~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~ 289 (644)
T 2z6h_A 213 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN 289 (644)
T ss_dssp CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 6554455556789999999999999999999999999998754321 1112789999999999999999999999999
Q ss_pred hhcCCchhhHHHhhcCchHHHHHhhcCCC-chhHHHHHHHHHHHHhcCCH--HHHH-HHHHhCcHHHHHHHHhcCc-hhH
Q 009636 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKSIKKEACWTVSNITAGNR--EQIQ-AVIEANIIGPLVALLENAE-FDI 386 (530)
Q Consensus 312 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~--~~~~-~l~~~~~i~~L~~ll~~~~-~~v 386 (530)
++.+++.....+.+.|+++.|+.++.+.. .+.++..|+++|+|++..++ +..+ .+++.|+++.|+++|.+.+ +.+
T Consensus 290 L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v 369 (644)
T 2z6h_A 290 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 369 (644)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHH
T ss_pred HHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHH
Confidence 99988888888899999999999998742 37999999999999997533 2333 4778899999999998874 799
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCC----------------------hHHHHHHHHHHHHHHHhh
Q 009636 387 KKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPD----------------------PRIVTVCLEGLENILKVG 444 (530)
Q Consensus 387 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~----------------------~~~~~~al~~l~~ll~~~ 444 (530)
++.|+|+|.|++.+. +....+.+.|+++.|+.+|...+ .+++..++.+|.++....
T Consensus 370 ~~~a~~~L~nLa~~~--~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~ 447 (644)
T 2z6h_A 370 IKATVGLIRNLALCP--ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV 447 (644)
T ss_dssp HHHHHHHHHHHTTSG--GGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHccCH--HHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCH
Confidence 999999999999853 34478889999999999987633 446667777777777543
Q ss_pred hhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009636 445 EAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL 495 (530)
Q Consensus 445 ~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~ 495 (530)
. .+..+.+.|+++.|..+..+.++++...|...+.++..
T Consensus 448 ~------------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~ 486 (644)
T 2z6h_A 448 H------------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ 486 (644)
T ss_dssp H------------HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred H------------HHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 2 25667789999999999999999999999988777643
No 24
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=5.4e-32 Score=290.42 Aligned_cols=402 Identities=17% Similarity=0.166 Sum_probs=339.1
Q ss_pred CCHHHHHHhhcCC-ChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009636 73 ENLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151 (530)
Q Consensus 73 ~~l~~l~~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~ 151 (530)
+.++.|++.|.++ +++++..|+.+|+++... ......+.+.|+++.|+.+|.+++ +.++..|+++|.+++...+..
T Consensus 192 ~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~--~~~~~~i~~~g~I~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~~~~~ 268 (780)
T 2z6g_A 192 QMVSAIVRTMQNTNDVETARCTSGTLHNLSHH--REGLLAIFKSGGIPALVNMLGSPV-DSVLFHAITTLHNLLLHQEGA 268 (780)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHSTTH
T ss_pred ChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCChhh
Confidence 4688999999854 899999999999997654 345677888999999999999988 999999999999999977888
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009636 152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (530)
Q Consensus 152 ~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~ 231 (530)
+..+.+.|+++.|+.++.+++..++..++.+|.+++..++..+..+...|+++.|+.++...........++.+|.+|+.
T Consensus 269 ~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~ 348 (780)
T 2z6g_A 269 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 348 (780)
T ss_dssp HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Confidence 88888999999999999999999999999999999988888888889999999999999655566777789999999997
Q ss_pred CCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhH
Q 009636 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311 (530)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~n 311 (530)
...........++++.|+.++.+.+..++..++|++.+++...... ....++++.|+.+|.+.++.++..|+++|++
T Consensus 349 ~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~ 425 (780)
T 2z6g_A 349 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN 425 (780)
T ss_dssp STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 6544444556789999999999999999999999999998765321 1123688999999999999999999999999
Q ss_pred hhcCCchhhHHHhhcCchHHHHHhhcCCCc-hhHHHHHHHHHHHHhcCCHH---HHHHHHHhCcHHHHHHHHhcCc-hhH
Q 009636 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYK-KSIKKEACWTVSNITAGNRE---QIQAVIEANIIGPLVALLENAE-FDI 386 (530)
Q Consensus 312 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-~~v~~~a~~~L~nl~~~~~~---~~~~l~~~~~i~~L~~ll~~~~-~~v 386 (530)
|+.+++.....+++.|+++.|+.+|.+..+ ..++..|+++|+||+..+++ ....+...++++.|+.++.+++ +.+
T Consensus 426 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v 505 (780)
T 2z6g_A 426 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 505 (780)
T ss_dssp HTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred HHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHH
Confidence 999888888888999999999999986323 48999999999999875433 2346778899999999999886 499
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCC----------------------hHHHHHHHHHHHHHHHhh
Q 009636 387 KKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPD----------------------PRIVTVCLEGLENILKVG 444 (530)
Q Consensus 387 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~----------------------~~~~~~al~~l~~ll~~~ 444 (530)
++.|+|+|+|++.+ +.....+.+.|+++.|+.+|...+ .+++..++.+|.++....
T Consensus 506 ~~~A~~aL~nLa~~--~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~ 583 (780)
T 2z6g_A 506 IKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDI 583 (780)
T ss_dssp HHHHHHHHHHHHSS--HHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHhcC--HHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcCh
Confidence 99999999999984 455578889999999999986543 346667777888776322
Q ss_pred hhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009636 445 EAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW 494 (530)
Q Consensus 445 ~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~ 494 (530)
. .+..+.+.|++..|..+..+++++|...|...+.++.
T Consensus 584 ~------------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~ 621 (780)
T 2z6g_A 584 H------------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA 621 (780)
T ss_dssp H------------HHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred h------------hHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 1 3566888999999999999999999999988877653
No 25
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=5.1e-30 Score=247.10 Aligned_cols=273 Identities=19% Similarity=0.173 Sum_probs=237.5
Q ss_pred CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcC----------CCchhHHHHHHHHhhhhccCCCCCCh-h
Q 009636 171 PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG----------QPKLSMLRNATWTLSNFCRGKPQPPF-D 239 (530)
Q Consensus 171 ~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~----------~~~~~~~~~a~~~L~~L~~~~~~~~~-~ 239 (530)
+......+|+|+|+|++.+ +++|+.+.+.|++++|+.+|.. ..++.+++.|+|+|.||+.+.+.... .
T Consensus 44 ~~~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i 122 (354)
T 3nmw_A 44 PVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATL 122 (354)
T ss_dssp GGGGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3445667899999999988 5799999999999999999941 13578999999999999988642222 2
Q ss_pred -hhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC-ChHHHHHHHHhCcHHHHHHhh-CCCCchhHHHHHHHHhHhhcCC
Q 009636 240 -QVSPALPALAHLIHSNDDEVLTDACWALSYLSDG-TNDKIQAVIEAGVFPRLAEFL-MHPSPSVLIPALRTVGNIVTGD 316 (530)
Q Consensus 240 -~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~l~~L~~lL-~~~~~~~~~~al~~L~nl~~~~ 316 (530)
...|++|.|+.+|.+++++++..++|+|.+++.. ++.....+.+.|+++.|+.+| .+.++.++..|+.+|+||+..+
T Consensus 123 ~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~ 202 (354)
T 3nmw_A 123 CSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC 202 (354)
T ss_dssp HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccC
Confidence 2457799999999999999999999999999985 556777888999999999974 6678899999999999999866
Q ss_pred chhhHHHh-hcCchHHHHHhhcCCCch----hHHHHHHHHHHHHhc---CCHHHHHHHHHhCcHHHHHHHHhcCchhHHH
Q 009636 317 DMQTQCVI-EYQALPCLLNLLSGNYKK----SIKKEACWTVSNITA---GNREQIQAVIEANIIGPLVALLENAEFDIKK 388 (530)
Q Consensus 317 ~~~~~~~~-~~~~l~~L~~lL~~~~~~----~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~ 388 (530)
+.....+. ..|+++.|+.+|.++ ++ .+++.|+|+|.|++. ++++.++.+.+.|+++.|+.+|.+++..+++
T Consensus 203 ~~nk~~i~~~~Gai~~Lv~lL~~~-~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~ 281 (354)
T 3nmw_A 203 TENKADICAVDGALAFLVGTLTYR-SQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVS 281 (354)
T ss_dssp HHHHHHHHHSTTHHHHHHHHTTCC-CSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHH
T ss_pred hhhhHHHHHhcCcHHHHHHHhccC-CCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHH
Confidence 55555555 789999999999876 43 599999999999997 7889999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhh
Q 009636 389 EAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEA 446 (530)
Q Consensus 389 ~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~ 446 (530)
+|+|+|.|++.+ ++++...+.+.|+++.|+++|.+++++++..++++|.+|+...+.
T Consensus 282 ~A~~aL~nLa~~-~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 282 NACGTLWNLSAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHHHHHTSS-CHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 999999999875 678899999999999999999999999999999999999987554
No 26
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=2.5e-30 Score=249.28 Aligned_cols=269 Identities=19% Similarity=0.178 Sum_probs=234.7
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-----------CCHHHHHHHHHHHHhhhCCCchhhhhHh-h
Q 009636 132 QLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-----------PSDDVREQAVWALGNIAGDSPRCRDLVL-S 199 (530)
Q Consensus 132 ~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-----------~~~~i~~~a~~~L~nl~~~~~~~~~~i~-~ 199 (530)
..+..|+|+|.|++. ++++++.+++.|+++.|+.+|.. .++.++..|+|+|.||+.+.+..+..+. .
T Consensus 47 ~~~~~A~~aL~nls~-d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~ 125 (354)
T 3nmw_A 47 HQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125 (354)
T ss_dssp GTHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 456689999999999 58999999999999999999942 2467999999999999988876777765 4
Q ss_pred cCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC--CCCChhhhhchHHHHHHhh-cCCChhHHHHHHHHHHHhccCChH
Q 009636 200 QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK--PQPPFDQVSPALPALAHLI-HSNDDEVLTDACWALSYLSDGTND 276 (530)
Q Consensus 200 ~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~--~~~~~~~~~~~l~~L~~ll-~~~d~~v~~~a~~~l~~l~~~~~~ 276 (530)
.|++++|+.+| .+.+.+++..++|+|.||+... .........|++|.|+.+| .+.+++++..++++|++++...++
T Consensus 126 ~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~ 204 (354)
T 3nmw_A 126 KGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTE 204 (354)
T ss_dssp HHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred CCcHHHHHHHH-CCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChh
Confidence 56699999999 7889999999999999999862 2334445679999999975 567899999999999999986655
Q ss_pred HHHHHH-HhCcHHHHHHhhCCCCc----hhHHHHHHHHhHhhc---CCchhhHHHhhcCchHHHHHhhcCCCchhHHHHH
Q 009636 277 KIQAVI-EAGVFPRLAEFLMHPSP----SVLIPALRTVGNIVT---GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEA 348 (530)
Q Consensus 277 ~~~~~~-~~~~l~~L~~lL~~~~~----~~~~~al~~L~nl~~---~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a 348 (530)
....+. ..|+++.|+.+|.+.++ .++..|+++|.|++. +++..++.+.+.|+++.|+.+|.++ +..++++|
T Consensus 205 nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~A 283 (354)
T 3nmw_A 205 NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSNA 283 (354)
T ss_dssp HHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS-CHHHHHHH
T ss_pred hhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC-ChHHHHHH
Confidence 545555 78999999999988654 489999999999997 6888888899999999999999998 89999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCH
Q 009636 349 CWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTH 403 (530)
Q Consensus 349 ~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~ 403 (530)
+|+|+|++.+++++.+.+++.|+++.|++++.+++.++++.|+++|.|++.+...
T Consensus 284 ~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 284 CGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 9999999988999999999999999999999999999999999999999997543
No 27
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.95 E-value=8.3e-27 Score=216.92 Aligned_cols=240 Identities=28% Similarity=0.422 Sum_probs=222.6
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhh
Q 009636 116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD 195 (530)
Q Consensus 116 g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~ 195 (530)
|.+|.|+++|.+++ ++++..|+++|.+++..+++.+..+++.|+++.|+.++.++++.++..++++|++++.+.+..+.
T Consensus 2 ~~i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 2 NDVEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp CHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 56899999999988 99999999999999998888999999999999999999999999999999999999999888999
Q ss_pred hHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC-CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC
Q 009636 196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT 274 (530)
Q Consensus 196 ~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~ 274 (530)
.+.+.|+++.++.++ .+.+..++..++|+|.+++... .........++++.|+.++.++++.++..++++|++++...
T Consensus 81 ~~~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~ 159 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP 159 (252)
T ss_dssp HHHHTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999 6788999999999999999654 33334455789999999999999999999999999999988
Q ss_pred hHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 009636 275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN 354 (530)
Q Consensus 275 ~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n 354 (530)
+.....+.+.|+++.|+.++.++++.++..|+++|++++.+++.....+.+.|+++.|+.++.++ ++.+++.|+|+|+|
T Consensus 160 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~ 238 (252)
T 4hxt_A 160 DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTST-DSEVQKEAQRALEN 238 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCC-cHHHHHHHHHHHHH
Confidence 88878899999999999999999999999999999999998888888899999999999999998 99999999999999
Q ss_pred HhcC
Q 009636 355 ITAG 358 (530)
Q Consensus 355 l~~~ 358 (530)
++..
T Consensus 239 l~~~ 242 (252)
T 4hxt_A 239 IKSG 242 (252)
T ss_dssp HHHT
T ss_pred HHcC
Confidence 9874
No 28
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.95 E-value=1.7e-26 Score=214.79 Aligned_cols=241 Identities=27% Similarity=0.415 Sum_probs=223.5
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC-CCCC
Q 009636 159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPP 237 (530)
Q Consensus 159 g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~-~~~~ 237 (530)
|.++.|+.+|.+++++++..|+++|.+++...+..+..+.+.|+++.|+.++ .+.+..++..++|+|.+++... ....
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 5689999999999999999999999999998887889999999999999999 7778999999999999999874 3344
Q ss_pred hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCc
Q 009636 238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD 317 (530)
Q Consensus 238 ~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~ 317 (530)
.....++++.|+.++.+++++++..++++|++++...+.....+.+.|+++.|+.++.++++.++..++++|++++.+.+
T Consensus 81 ~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~ 160 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD 160 (252)
T ss_dssp HHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH
Confidence 45567899999999999999999999999999998888888889999999999999999999999999999999999888
Q ss_pred hhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHh
Q 009636 318 MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNA 397 (530)
Q Consensus 318 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 397 (530)
.....+++.|+++.|+.++.++ ++.++..|+|+|++++.+++.....+.+.|+++.|++++.+++++++..|+++|.|+
T Consensus 161 ~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 239 (252)
T 4hxt_A 161 EAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENI 239 (252)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 8878889999999999999988 999999999999999998899999999999999999999999999999999999999
Q ss_pred hcCC
Q 009636 398 TSGG 401 (530)
Q Consensus 398 ~~~~ 401 (530)
....
T Consensus 240 ~~~~ 243 (252)
T 4hxt_A 240 KSGG 243 (252)
T ss_dssp HHTC
T ss_pred HcCC
Confidence 8754
No 29
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.95 E-value=1.4e-26 Score=217.22 Aligned_cols=234 Identities=16% Similarity=0.160 Sum_probs=200.5
Q ss_pred hHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHH-hhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhh
Q 009636 258 EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAE-FLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLL 336 (530)
Q Consensus 258 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~-lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL 336 (530)
+-+..++..|.+++...+ ....+.+.|+++.|+. +|.++++.++..|+++|++++.+++...+.+++.|+++.|+.+|
T Consensus 55 e~k~~Al~~L~~lv~~~d-na~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 55 QEREGALELLADLCENMD-NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHHHHTSHH-HHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChh-hHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 456778889999887654 5566888999999999 99999999999999999999999998888999999999999999
Q ss_pred cCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChH
Q 009636 337 SGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIK 416 (530)
Q Consensus 337 ~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~ 416 (530)
.++.+..+++.|+|+|+|++.+++...+.+.+.|+++.|+.++.++++.++..|+|+|.+++.+ +++.+..+++.|+++
T Consensus 134 ~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i~ 212 (296)
T 1xqr_A 134 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMVQ 212 (296)
T ss_dssp HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCHH
Confidence 8643789999999999999999999888999999999999999999999999999999999987 668889999999999
Q ss_pred HHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCC-CHHHHHHHHHHHHHhCC
Q 009636 417 PLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHD-NAEIYEKSVKLLETYWL 495 (530)
Q Consensus 417 ~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~-~~~v~~~a~~il~~~~~ 495 (530)
.|+.+|.+++++++..++.+|.+++...+..........+.+..++++ .++.++.++ +.++|++|..|+++||.
T Consensus 213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~-----~~~~lq~~e~~~e~~~~~~~il~~~f~ 287 (296)
T 1xqr_A 213 QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRH-----RCQLLQQHEEYQEELEFCEKLLQTCFS 287 (296)
T ss_dssp HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHH-----HHHHHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHH-----HHHHccchHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999987554221111112335666664 477788776 89999999999999997
Q ss_pred CCC
Q 009636 496 DDE 498 (530)
Q Consensus 496 ~~~ 498 (530)
+.+
T Consensus 288 ~~~ 290 (296)
T 1xqr_A 288 SPA 290 (296)
T ss_dssp ---
T ss_pred CCC
Confidence 644
No 30
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.95 E-value=7.3e-27 Score=217.35 Aligned_cols=239 Identities=36% Similarity=0.551 Sum_probs=220.2
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhh
Q 009636 116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD 195 (530)
Q Consensus 116 g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~ 195 (530)
...+.++.+|.+++ ++++..|+++|.++...+.+.+..+++.|+++.|+.+|.++++.++..|+++|++++.+.+..+.
T Consensus 12 ~~~~~~~~~L~s~~-~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 12 SELPQMTQQLNSDD-MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp CSHHHHHHHHHSSC-SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred chHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 45889999999998 89999999999887776778888899999999999999999999999999999999998888999
Q ss_pred hHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCC-ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC
Q 009636 196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP-PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT 274 (530)
Q Consensus 196 ~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~ 274 (530)
.+.+.|+++.|+.++ .+.+..++..++|+|.+|+...+.. ......+++|.|+.++.++++.++..++|+|++++...
T Consensus 91 ~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 169 (252)
T 4db8_A 91 AVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (252)
T ss_dssp HHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999 6678999999999999999886544 45566889999999999999999999999999999988
Q ss_pred hHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 009636 275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN 354 (530)
Q Consensus 275 ~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n 354 (530)
+.....+.+.|+++.|+.++.++++.++..|+++|++++.+++.....+++.|+++.|+.++.++ ++.++..|+|+|+|
T Consensus 170 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~A~~~L~~ 248 (252)
T 4db8_A 170 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEK 248 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS-SSHHHHTHHHHHHT
T ss_pred hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 88888889999999999999999999999999999999988888888899999999999999998 99999999999999
Q ss_pred Hhc
Q 009636 355 ITA 357 (530)
Q Consensus 355 l~~ 357 (530)
++.
T Consensus 249 l~~ 251 (252)
T 4db8_A 249 LQS 251 (252)
T ss_dssp TC-
T ss_pred Hhc
Confidence 974
No 31
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.95 E-value=2.3e-26 Score=214.03 Aligned_cols=239 Identities=35% Similarity=0.567 Sum_probs=217.6
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009636 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (530)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (530)
..++.++..|++++++++..|+++|+++++.. .+....+++.|++|.|+++|.+++ +.++..|+++|.+++.++++.+
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~-~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~ 89 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQI 89 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHH-HHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-CchHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHH
Confidence 46899999999999999999999999988863 667788899999999999999988 9999999999999999889999
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009636 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (530)
Q Consensus 153 ~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~ 232 (530)
..+++.|+++.|+.++.++++.++..|+|+|+|++.+.+.....+.+.|+++.|+.++ .+.+..++..++|+|.+|+..
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~ 168 (252)
T 4db8_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASG 168 (252)
T ss_dssp HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999988775447889999999999999 677899999999999999987
Q ss_pred CCC-CChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhH
Q 009636 233 KPQ-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311 (530)
Q Consensus 233 ~~~-~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~n 311 (530)
.+. .......+++|.|+.++.++++.++..++++|++++...+.....+.+.|+++.|+.++.++++.++..|+++|+|
T Consensus 169 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~ 248 (252)
T 4db8_A 169 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK 248 (252)
T ss_dssp CHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHT
T ss_pred ChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 532 2233458899999999999999999999999999998888888889999999999999999999999999999999
Q ss_pred hhc
Q 009636 312 IVT 314 (530)
Q Consensus 312 l~~ 314 (530)
++.
T Consensus 249 l~~ 251 (252)
T 4db8_A 249 LQS 251 (252)
T ss_dssp TC-
T ss_pred Hhc
Confidence 974
No 32
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.92 E-value=4.9e-24 Score=218.55 Aligned_cols=322 Identities=10% Similarity=0.112 Sum_probs=256.3
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHH-HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChh--
Q 009636 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVI-RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE-- 150 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~-- 150 (530)
..+.+.+.|.+++.+.+..|++.|..+... ......+. +.|+++.|++++++..+..+.+.++.+|.|++...+.
T Consensus 335 La~~~~~~L~~~~~~~~~~AvEgLaYLSl~--~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~ 412 (778)
T 3opb_A 335 LSEIFINAISRRIVPKVEMSVEALAYLSLK--ASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXX 412 (778)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHHTTS--SHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCC
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHhCC--HHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccc
Confidence 457777788887777799999999988543 33444454 4677999999999633378999999999999984331
Q ss_pred ------------------------------------hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhh
Q 009636 151 ------------------------------------HTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194 (530)
Q Consensus 151 ------------------------------------~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~ 194 (530)
.+..+.+.|+++.|+.++++.++.+++.++|+|.||+.+ +..|
T Consensus 413 ~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~~R 491 (778)
T 3opb_A 413 XXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFI 491 (778)
T ss_dssp CCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GGGH
T ss_pred hhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHH
Confidence 345667899999999999999999999999999999977 5689
Q ss_pred hhHhhcCChHHHHHhhcCCCch--hHHHHHHHHhhhhccCCC-CCCh--hhhhchHHHHHHhhcC-CCh-----------
Q 009636 195 DLVLSQGGLVPLLAQLNGQPKL--SMLRNATWTLSNFCRGKP-QPPF--DQVSPALPALAHLIHS-NDD----------- 257 (530)
Q Consensus 195 ~~i~~~~~i~~Ll~ll~~~~~~--~~~~~a~~~L~~L~~~~~-~~~~--~~~~~~l~~L~~ll~~-~d~----------- 257 (530)
..+.+.|++++|+.++...... ..+..|+++|.+++.... ...+ ....+++|.|+.+|.. ++.
T Consensus 492 ~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~ 571 (778)
T 3opb_A 492 PQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQI 571 (778)
T ss_dssp HHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCC
T ss_pred HHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccc
Confidence 9999999999999999544332 378999999999985432 1111 0113899999999983 211
Q ss_pred --hHHHHHHHHHHHhccCC----hHHHHHHHHh-CcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcC---
Q 009636 258 --EVLTDACWALSYLSDGT----NDKIQAVIEA-GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQ--- 327 (530)
Q Consensus 258 --~v~~~a~~~l~~l~~~~----~~~~~~~~~~-~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~--- 327 (530)
--...++.+|.|++..+ ++..+.++.. |+++.|..+|.+++..++..|+++++|++...+...+.+.+.+
T Consensus 572 ~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~ 651 (778)
T 3opb_A 572 KLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQ 651 (778)
T ss_dssp CHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHH
T ss_pred cHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCch
Confidence 12678999999999886 2334557774 8999999999999999999999999999984443222343222
Q ss_pred ---chHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHh-CcHHHHHHHHhc--CchhHHHHHHHHHHHhhc
Q 009636 328 ---ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEA-NIIGPLVALLEN--AEFDIKKEAAWAISNATS 399 (530)
Q Consensus 328 ---~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~-~~i~~L~~ll~~--~~~~v~~~a~~aL~nl~~ 399 (530)
-++.|+.++..+ +.++|+.|+|+|+|++.+++...+.+++. ++++.++.++.+ ++.+++..++.++.|++.
T Consensus 652 ~~~rL~lLV~Ll~s~-D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 652 SLRNFNILVKLLQLS-DVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred hhccHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 378899999988 99999999999999988888888888876 799999999999 899999999999999996
No 33
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.4e-22 Score=207.94 Aligned_cols=399 Identities=14% Similarity=0.108 Sum_probs=298.8
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009636 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 153 (530)
..+.+.+.+.+........++..+.+.++. ....+..+..+.++.|.+.+++ ..++..|+-+|+.+.........
T Consensus 256 ~~~~l~~~~~~~~~~~~~~a~L~lLsaACi--~~~cR~~I~~~~~~~L~~~l~~---~~ir~lAavvL~KL~~~~~~~~~ 330 (778)
T 3opb_A 256 LSKLFKKRVFEEQDLQFTKELLRLLSSACI--DETMRTYITENYLQLLERSLNV---EDVQIYSALVLVKTWSFTKLTCI 330 (778)
T ss_dssp HHHHHHHHHHSSCCHHHHHHHHHHHHHHCC--SHHHHHHHHHHHHHHHHHHTTS---GGGHHHHHHHHHHHTGGGTCTTC
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHhC--CcHHHHHHHHhHHHHHHHHhcc---HHHHHHHHHHHHHHhcCCCCCcC
Confidence 356666666554444444555555556666 4555666677778999999864 47889999999998874322111
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHh-hcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009636 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVL-SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (530)
Q Consensus 154 ~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~-~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~ 232 (530)
.+. ...+.+.+++.+++..-+..|++.|+.++.+.. .|..+. +.+++..|+.++....+..+...++.+|.|++..
T Consensus 331 si~--~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~-VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~ 407 (778)
T 3opb_A 331 NLK--QLSEIFINAISRRIVPKVEMSVEALAYLSLKAS-VKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTL 407 (778)
T ss_dssp CHH--HHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSH-HHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCC
T ss_pred cHH--HHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHH-HHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC
Confidence 111 245777888877766679999999999987665 555554 5567999999995457888999999999999987
Q ss_pred CCCCC---------------------------------------hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC
Q 009636 233 KPQPP---------------------------------------FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG 273 (530)
Q Consensus 233 ~~~~~---------------------------------------~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~ 273 (530)
.+... .....|++|.|+.++.+.++.++..++|+|.+++..
T Consensus 408 ~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d 487 (778)
T 3opb_A 408 PEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS 487 (778)
T ss_dssp CCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS
T ss_pred CcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 64210 012268899999999999999999999999999866
Q ss_pred ChHHHHHHHHhCcHHHHHHhhCCCCch---hHHHHHHHHhHhhcCCchhhHHHhh----cCchHHHHHhhcC-CCch---
Q 009636 274 TNDKIQAVIEAGVFPRLAEFLMHPSPS---VLIPALRTVGNIVTGDDMQTQCVIE----YQALPCLLNLLSG-NYKK--- 342 (530)
Q Consensus 274 ~~~~~~~~~~~~~l~~L~~lL~~~~~~---~~~~al~~L~nl~~~~~~~~~~~~~----~~~l~~L~~lL~~-~~~~--- 342 (530)
.+....+++.|+++.|+.++.+.... .+..|+.+|++++...+... ++. .|+++.|+.+|.. +...
T Consensus 488 -~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~--~f~~~~~~~aI~pLv~LL~~~~~~~~~~ 564 (778)
T 3opb_A 488 -KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL--IFKKYSALNAIPFLFELLPRSTPVDDNP 564 (778)
T ss_dssp -GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH--HSSSSCSTTHHHHHHHTSCCSSSCSSCC
T ss_pred -HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH--HcCCCccccchHHHHHHcCCCCCccccc
Confidence 45667788999999999999887644 79999999999985443221 121 3899999999983 2111
Q ss_pred ---------hHHHHHHHHHHHHhcCC----HHHHHHHHHh-CcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHH-H
Q 009636 343 ---------SIKKEACWTVSNITAGN----REQIQAVIEA-NIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQI-K 407 (530)
Q Consensus 343 ---------~v~~~a~~~L~nl~~~~----~~~~~~l~~~-~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~-~ 407 (530)
.-+.+|+.+|.|++..+ .+..+.++.. |+++.|..++.+++..+|+.|+++++|++.. ++.+ .
T Consensus 565 l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~--~e~i~~ 642 (778)
T 3opb_A 565 LHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSH--PLTIAA 642 (778)
T ss_dssp ---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTS--GGGTGG
T ss_pred ccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCC--cHHHHH
Confidence 12779999999999975 3446777884 9999999999999999999999999999984 3432 2
Q ss_pred HHHHc------CChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcC--CC
Q 009636 408 FLVIQ------GCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTH--DN 479 (530)
Q Consensus 408 ~l~~~------~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~--~~ 479 (530)
.+... +.++.|+.+++.+|.+++..|.++|.++....+.. ...+++..+|++.+..+... ++
T Consensus 643 k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~i----------a~~ll~~~~gi~~Ll~lL~~~~~~ 712 (778)
T 3opb_A 643 KFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLI----------AKELLTKKELIENAIQVFADQIDD 712 (778)
T ss_dssp GTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHH----------HHHHTTCHHHHHHHHHHHHHTTTC
T ss_pred HHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHH----------HHHHHHccccHHHHHHHHhccCCC
Confidence 33221 23789999999999999999999999986544432 24555556899998887666 99
Q ss_pred HHHHHHHHHHHHHhCC
Q 009636 480 AEIYEKSVKLLETYWL 495 (530)
Q Consensus 480 ~~v~~~a~~il~~~~~ 495 (530)
++++.++..++...++
T Consensus 713 ~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 713 IELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999986
No 34
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.91 E-value=8.6e-23 Score=184.15 Aligned_cols=199 Identities=38% Similarity=0.567 Sum_probs=185.9
Q ss_pred hhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhh
Q 009636 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQT 320 (530)
Q Consensus 241 ~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~ 320 (530)
..+..+.|..++.+++++++..++|+|.+++..+++....+.+.|+++.|+.+|.++++.++..|+++|+|++.+++...
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 36678899999999999999999999999998888888889999999999999999999999999999999999888888
Q ss_pred HHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcC
Q 009636 321 QCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG 400 (530)
Q Consensus 321 ~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 400 (530)
..+++.|+++.|+.+|.++ ++.++..|+|+|+|++.++++....+++.|+++.|++++.++++.++..|+++|.|++..
T Consensus 90 ~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 8899999999999999999 999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHH
Q 009636 401 GTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENIL 441 (530)
Q Consensus 401 ~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll 441 (530)
+++....+.+.|+++.|+.++.++++.++..++++|.++.
T Consensus 169 -~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 169 -GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp -CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred -CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 4678888899999999999999999999999999999875
No 35
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.90 E-value=2.2e-22 Score=181.45 Aligned_cols=199 Identities=34% Similarity=0.533 Sum_probs=181.5
Q ss_pred HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchh
Q 009636 114 RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC 193 (530)
Q Consensus 114 ~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~ 193 (530)
..+..+.|+.+|.+++ +.++..|+++|.+++.++++.+..+++.|+++.|+.+|.++++.++..|+|+|+|++.+.+..
T Consensus 10 ~~~~~~~l~~LL~s~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 10 HGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp ---CHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred ccchhHHHHHHhcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence 3578999999999988 999999999999999888999999999999999999999999999999999999999888888
Q ss_pred hhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCC-ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhcc
Q 009636 194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP-PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD 272 (530)
Q Consensus 194 ~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~ 272 (530)
+..+.+.|+++.|+.++ .+.+..++..++|+|.+++...+.. ......+++|.|+.++.++++.++..++++|.+++.
T Consensus 89 ~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 89 IQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 167 (210)
T ss_dssp HHHHHHTTCHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHH-cCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 99999999999999999 7788999999999999999865322 234457899999999999999999999999999999
Q ss_pred CChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhc
Q 009636 273 GTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT 314 (530)
Q Consensus 273 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~ 314 (530)
..+.....+.+.|+++.|+.++.++++.++..|+++|.+++.
T Consensus 168 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 168 GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred CCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 878888889999999999999999999999999999999975
No 36
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.89 E-value=1e-21 Score=184.08 Aligned_cols=226 Identities=13% Similarity=0.091 Sum_probs=184.6
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHh
Q 009636 131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK-LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQ 209 (530)
Q Consensus 131 ~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~l 209 (530)
.+-+..|+..|.+++. +.++...+.+.|+++.|+. +|.++++.+++.|+|+|++++.+++.+++.+++.|++++|+.+
T Consensus 54 ~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 54 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 4678889999999998 6678888899999999999 9999999999999999999999999999999999999999999
Q ss_pred hcCCCchhHHHHHHHHhhhhccCCCC-CChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHH
Q 009636 210 LNGQPKLSMLRNATWTLSNFCRGKPQ-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFP 288 (530)
Q Consensus 210 l~~~~~~~~~~~a~~~L~~L~~~~~~-~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~ 288 (530)
+..+++..+++.|+|+|++++++.+. .......+++|.|+.++.+.+..++..++|+|++++..+++.+..+++.|+++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~ 212 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 212 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence 96556889999999999999998643 22344478999999999999999999999999999988888889999999999
Q ss_pred HHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhh--cCchHH---HHHhhcCCC-chhHHHHHHHHHHHHhc
Q 009636 289 RLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIE--YQALPC---LLNLLSGNY-KKSIKKEACWTVSNITA 357 (530)
Q Consensus 289 ~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~--~~~l~~---L~~lL~~~~-~~~v~~~a~~~L~nl~~ 357 (530)
.|+.+|.+++..++..|+++|++|+.+.+......-. ..+... -.+-++... ..++.+.+..++.++..
T Consensus 213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~ 287 (296)
T 1xqr_A 213 QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFS 287 (296)
T ss_dssp HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999875433222111 112122 223333221 24556666666666654
No 37
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.84 E-value=1.4e-20 Score=168.43 Aligned_cols=197 Identities=19% Similarity=0.154 Sum_probs=170.5
Q ss_pred CHHHHHHhhcCCCCH--HHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhh
Q 009636 117 VVPRFVEFLLREDYP--QLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194 (530)
Q Consensus 117 ~v~~Lv~ll~~~~~~--~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~ 194 (530)
.+|.++++|.+++ + .++..|+++|.+++..+++.+..+++.|+||.|+++|+++++++++.|+|+|.||+.+++..+
T Consensus 9 ~i~~lV~lL~s~~-~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 9 TLERAVSMLEADH-MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CHHHHHHTCCSSC-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHhCCCC-chHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 4899999999988 6 899999999999998889999999999999999999999999999999999999999888899
Q ss_pred hhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhc----------------CCChh
Q 009636 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH----------------SNDDE 258 (530)
Q Consensus 195 ~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~----------------~~d~~ 258 (530)
..+.+.|++++|+++|..+.+.++++.++.+|++|+....... ....+.+|.|+.++. ..+++
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~-~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKN-LMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHH-HHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHH-HHHhccHHHHHHHHhccccCCcccccccccccchHH
Confidence 9999999999999999546789999999999999998754333 334567888887653 13678
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHh-CcHHHHHHhhCC------CCchhHHHHHHHHhHhhcC
Q 009636 259 VLTDACWALSYLSDGTNDKIQAVIEA-GVFPRLAEFLMH------PSPSVLIPALRTVGNIVTG 315 (530)
Q Consensus 259 v~~~a~~~l~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~------~~~~~~~~al~~L~nl~~~ 315 (530)
++.++..+|.|++..+++..+.+.+. |+++.|+.+++. .+.+.++.|+.+|.||+..
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 99999999999998877777777765 778999999875 2567899999999999864
No 38
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.83 E-value=6.1e-20 Score=164.36 Aligned_cols=197 Identities=16% Similarity=0.183 Sum_probs=166.5
Q ss_pred CCHHHHHHhhcCCCh--HHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChh
Q 009636 73 ENLPVMVAGVWSNDS--GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE 150 (530)
Q Consensus 73 ~~l~~l~~~l~s~~~--~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~ 150 (530)
..+|.++++|.++++ ++|..|+..++++.... .+....+++.|++|.|+++|.+++ +.+|..|+|+|.||+.++++
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~-~~~r~~I~~~G~Ip~LV~lL~s~~-~~vq~~Aa~aL~nLa~~~~~ 85 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQK-SEARKRVNQLRGILKLLQLLKVQN-EDVQRAVCGALRNLVFEDND 85 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCC-cHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHH
Confidence 378999999999998 89999999999987653 556778889999999999999988 99999999999999998899
Q ss_pred hHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc---------------CCC
Q 009636 151 HTKVVIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN---------------GQP 214 (530)
Q Consensus 151 ~~~~~~~~g~i~~L~~ll~-~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~---------------~~~ 214 (530)
++..+.+.|+||.|+++|. +.+.++++.++.+|+||+.... .+..+.+ +++++|+.++. ...
T Consensus 86 nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~-~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~ 163 (233)
T 3tt9_A 86 NKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK-LKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLL 163 (233)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGG-GHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTC
T ss_pred HHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChh-hHHHHHh-ccHHHHHHHHhccccCCcccccccccccc
Confidence 9999999999999999997 5789999999999999987654 6667666 46999988762 113
Q ss_pred chhHHHHHHHHhhhhccCC-CCCChhh-hhchHHHHHHhhcC------CChhHHHHHHHHHHHhccC
Q 009636 215 KLSMLRNATWTLSNFCRGK-PQPPFDQ-VSPALPALAHLIHS------NDDEVLTDACWALSYLSDG 273 (530)
Q Consensus 215 ~~~~~~~a~~~L~~L~~~~-~~~~~~~-~~~~l~~L~~ll~~------~d~~v~~~a~~~l~~l~~~ 273 (530)
+..++.++.++|.||+... ....... ..|+++.|+.+++. .+...+++++.+|.||+..
T Consensus 164 ~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 164 DFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 6799999999999999865 3333333 35788999999874 2667899999999999865
No 39
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.78 E-value=2.8e-17 Score=172.04 Aligned_cols=344 Identities=11% Similarity=0.122 Sum_probs=247.8
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCch-hh
Q 009636 116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR-CR 194 (530)
Q Consensus 116 g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~-~~ 194 (530)
.++|.+..++.+++ ..+|..++.+|+.++..... ......+++.++.++.++++.++..|+++|+.++...+. .+
T Consensus 242 ~~~~~l~~~~~d~~-~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~ 317 (588)
T 1b3u_A 242 LVMPTLRQAAEDKS-WRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCR 317 (588)
T ss_dssp HTHHHHHHHHTCSS-HHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTH
T ss_pred HHHHHHHHHccCCC-HHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhh
Confidence 35666666666555 66777777777776652111 112235678888889888899999999999998854331 11
Q ss_pred hhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC
Q 009636 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT 274 (530)
Q Consensus 195 ~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~ 274 (530)
.......+++.+..++ .+.+..++..++++|..++..... ......++|.+..++.+.+++++..++.++..+....
T Consensus 318 ~~~~~~~l~p~l~~~l-~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~ 394 (588)
T 1b3u_A 318 ENVIMSQILPCIKELV-SDANQHVKSALASVIMGLSPILGK--DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVI 394 (588)
T ss_dssp HHHHHHTHHHHHHHHH-TCSCHHHHHHHHTTGGGGHHHHCH--HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHS
T ss_pred hhHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhhH--hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhc
Confidence 1112234667777777 778899999999999999864221 1224567889999999889999999999888876532
Q ss_pred hHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 009636 275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN 354 (530)
Q Consensus 275 ~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n 354 (530)
... .....+++.+..++.+.++.++..++.+++.++...... .....+++.+..++.+. +..+|..|+.+++.
T Consensus 395 ~~~---~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~ 467 (588)
T 1b3u_A 395 GIR---QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE---FFDEKLNSLCMAWLVDH-VYAIREAATSNLKK 467 (588)
T ss_dssp CHH---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG---GCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHH
T ss_pred CHH---HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH---HHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHH
Confidence 211 122357788889999999999999999999987522111 12234688899999888 89999999999999
Q ss_pred HhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHH
Q 009636 355 ITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCL 434 (530)
Q Consensus 355 l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al 434 (530)
++...... .....++|.|..++.+.++.+|..++++++.++.....+ .....+++.|..+++++++.++..++
T Consensus 468 l~~~~~~~---~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~----~~~~~~~~~l~~~l~d~~~~Vr~~a~ 540 (588)
T 1b3u_A 468 LVEKFGKE---WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD----ITTKHMLPTVLRMAGDPVANVRFNVA 540 (588)
T ss_dssp HHHHHCHH---HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH----HHHHHTHHHHHHGGGCSCHHHHHHHH
T ss_pred HHHHhCch---hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHH----HHHHHHHHHHHhhCCCCCchHHHHHH
Confidence 98632111 123468888888888889999999999999998742221 13346889999999999999999999
Q ss_pred HHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009636 435 EGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW 494 (530)
Q Consensus 435 ~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~ 494 (530)
+++..+....... +. ....+..|..+..+++++|+..|...+..+-
T Consensus 541 ~~l~~l~~~~~~~----------~~----~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 541 KSLQKIGPILDNS----------TL----QSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHGGGSCHH----------HH----HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhchh----------hh----HHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence 9999998653211 11 1234567777889999999999999988653
No 40
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.78 E-value=6.2e-18 Score=184.70 Aligned_cols=355 Identities=13% Similarity=0.129 Sum_probs=260.1
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 009636 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV 154 (530)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~ 154 (530)
-+.+++.+.++++.++..++.++..++.......+ .++++.|++.+.+++ +.++..++.+|+.++...+.....
T Consensus 92 k~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~w-----p~ll~~L~~~l~~~~-~~~r~~al~~L~~i~~~~~~~~~~ 165 (852)
T 4fdd_A 92 KSECLNNIGDSSPLIRATVGILITTIASKGELQNW-----PDLLPKLCSLLDSED-YNTCEGAFGALQKICEDSAEILDS 165 (852)
T ss_dssp HHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTC-----TTHHHHHHHHHSCSS-HHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCcccc-----HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHhHHHhch
Confidence 45667778888899999999999999876422222 457999999999887 899999999999999743332211
Q ss_pred HH----hCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhc
Q 009636 155 VI----DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC 230 (530)
Q Consensus 155 ~~----~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~ 230 (530)
-. -..+++.+++.+.++++.++..|+++|++++...+..-... -..+++.++..+ .+.+..++..++++|..++
T Consensus 166 ~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~-~~~~l~~l~~~~-~d~~~~vr~~a~~~L~~l~ 243 (852)
T 4fdd_A 166 DVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLH-IDSFIENLFALA-GDEEPEVRKNVCRALVMLL 243 (852)
T ss_dssp CSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTS-HHHHHHHHHHHH-TCCCHHHHHHHHHHHHHHH
T ss_pred hhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHH-HHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHH
Confidence 00 02356777888888899999999999999886544211110 113567777777 7788999999999999999
Q ss_pred cCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHH---hCcHHHHHHhh-----------CC
Q 009636 231 RGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE---AGVFPRLAEFL-----------MH 296 (530)
Q Consensus 231 ~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~---~~~l~~L~~lL-----------~~ 296 (530)
...+..-.....++++.+..++.+.++.++..+++++..++..... ...+. ..+++.++..+ .+
T Consensus 244 ~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~--~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d 321 (852)
T 4fdd_A 244 EVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPIC--KDVLVRHLPKLIPVLVNGMKYSDIDIILLKGD 321 (852)
T ss_dssp HHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTH--HHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC-
T ss_pred HhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhH--HHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCC
Confidence 8754322233467888888999999999999999999999865421 11222 14456666666 23
Q ss_pred -----------CCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 009636 297 -----------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQA 365 (530)
Q Consensus 297 -----------~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 365 (530)
.++.++..|..+++.++...+.. ++ ..+++.+...+.++ ++.+|..|++++++++.+..+....
T Consensus 322 ~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~-~~l~~~l~~~l~~~-~~~~R~aa~~alg~i~~~~~~~~~~ 396 (852)
T 4fdd_A 322 VEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE---LL-PHILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGMIP 396 (852)
T ss_dssp -----------CCCCHHHHHHHHHHHHHHHHGGG---GH-HHHHHHHHHHHTCS-SHHHHHHHHHHHHHTTTTTHHHHGG
T ss_pred cccccccccccccchHHHHHHHHHHHHHHhccHH---HH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcchHHHHH
Confidence 34568899999999998644322 11 24678888888888 8999999999999999987765543
Q ss_pred HHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhh
Q 009636 366 VIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGE 445 (530)
Q Consensus 366 l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~ 445 (530)
.+ .++++.++..+.+.++.||..|+|++++++........ .-.-.++++.|+..+.++++.++..++++|.+++....
T Consensus 397 ~l-~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~-~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~ 474 (852)
T 4fdd_A 397 YL-PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPP-DTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEAC 474 (852)
T ss_dssp GH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCT-TTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHG
T ss_pred HH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence 33 46889999999999999999999999999863211000 00112467888888888899999999999999987654
Q ss_pred h
Q 009636 446 A 446 (530)
Q Consensus 446 ~ 446 (530)
.
T Consensus 475 ~ 475 (852)
T 4fdd_A 475 T 475 (852)
T ss_dssp G
T ss_pred H
Confidence 3
No 41
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.76 E-value=6.5e-17 Score=176.62 Aligned_cols=400 Identities=13% Similarity=0.138 Sum_probs=264.1
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009636 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 153 (530)
.++.+++.+.++++.++..|++++..++... ...... .-.++++.++.++.+++ +.++..|+++|..++...++...
T Consensus 175 il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~-~~~~~~-~~~~~l~~l~~~~~d~~-~~vr~~a~~~L~~l~~~~~~~~~ 251 (852)
T 4fdd_A 175 MIPKFLQFFKHSSPKIRSHAVACVNQFIISR-TQALML-HIDSFIENLFALAGDEE-PEVRKNVCRALVMLLEVRMDRLL 251 (852)
T ss_dssp HHHHHTTTTTCSSHHHHHHHHHHHHTTTTTT-CHHHHT-SHHHHHHHHHHHHTCCC-HHHHHHHHHHHHHHHHHCHHHHG
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcc-cHHHHH-HHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHhCHHHHH
Confidence 4567777788889999999999999887542 111111 11346888888888887 99999999999999986554433
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhh--cCChHHHHHhhc----------CC--------
Q 009636 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLS--QGGLVPLLAQLN----------GQ-------- 213 (530)
Q Consensus 154 ~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~--~~~i~~Ll~ll~----------~~-------- 213 (530)
..+. ++++.++..+.+.++.++..|++++..++.... .+..+.. ...++.++..+. .+
T Consensus 252 ~~l~-~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~-~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~d 329 (852)
T 4fdd_A 252 PHMH-NIVEYMLQRTQDQDENVALEACEFWLTLAEQPI-CKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGD 329 (852)
T ss_dssp GGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTT-HHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC---------
T ss_pred HHHH-HHHHHHHHHccCCcHHHHHHHHHHHHHHhcchh-HHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccc
Confidence 2222 467888888888899999999999999986542 3332211 124555555551 12
Q ss_pred ---CchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHH
Q 009636 214 ---PKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRL 290 (530)
Q Consensus 214 ---~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L 290 (530)
.+..++..+..+|..++...+ ......++|.+..++.+++..++..++++++.++....+...... .++++.+
T Consensus 330 d~~~~~~vr~~a~~~L~~la~~~~---~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l-~~~l~~l 405 (852)
T 4fdd_A 330 DTISDWNLRKCSAAALDVLANVYR---DELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHL 405 (852)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHG---GGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGH-HHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHH-HHHHHHH
Confidence 223468888888888887543 234466888888899999999999999999999988765444333 3688999
Q ss_pred HHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 009636 291 AEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEAN 370 (530)
Q Consensus 291 ~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~ 370 (530)
+..+.++++.++..+++++++++...........-.++++.|+..+.+. ++.+|..|+|+|++++..........+ .+
T Consensus 406 ~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~-~~~vr~~a~~aL~~l~~~~~~~l~~~l-~~ 483 (852)
T 4fdd_A 406 IQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDS-NKRVQEAACSAFATLEEEACTELVPYL-AY 483 (852)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHGGGGGGGH-HH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHhhHhhHhHH-HH
Confidence 9999999999999999999999864321111112246788899999888 899999999999999863222211111 24
Q ss_pred cHHHHHHHHhcCchhHHHHHHHHHHHhh---------------------------------------------cCCCHHH
Q 009636 371 IIGPLVALLENAEFDIKKEAAWAISNAT---------------------------------------------SGGTHEQ 405 (530)
Q Consensus 371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~---------------------------------------------~~~~~~~ 405 (530)
+++.|+.++...+.+....+..++..++ ..-....
T Consensus 484 ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~~~~~~l~~i~~~~g~~~ 563 (852)
T 4fdd_A 484 ILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGF 563 (852)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhHhH
Confidence 5566666665544444333444444333 1100001
Q ss_pred HHHHHH--cCChHHHHh-------------ccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHH
Q 009636 406 IKFLVI--QGCIKPLCD-------------LLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEK 470 (530)
Q Consensus 406 ~~~l~~--~~~i~~L~~-------------lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 470 (530)
..++-. ..++..+.. ..+.++.+++..+++++..+....... +...+...+.+..
T Consensus 564 ~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~----------~~~~~~~~~~~~~ 633 (852)
T 4fdd_A 564 LPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGN----------IEQLVARSNILTL 633 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGG----------GHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHh----------HHHHhcCCcHHHH
Confidence 111000 001111111 112335667777888888877654321 3444545677888
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhC
Q 009636 471 IESLQTHDNAEIYEKSVKLLETYW 494 (530)
Q Consensus 471 l~~l~~~~~~~v~~~a~~il~~~~ 494 (530)
+..+..+++++|++.|..++..+.
T Consensus 634 l~~~l~~~~~~vr~~a~~~l~~l~ 657 (852)
T 4fdd_A 634 MYQCMQDKMPEVRQSSFALLGDLT 657 (852)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCChhHHHHHHHHHHHHH
Confidence 888888899999999988887653
No 42
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.76 E-value=1.2e-16 Score=167.15 Aligned_cols=381 Identities=12% Similarity=0.088 Sum_probs=285.3
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009636 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 153 (530)
.++.+...+.++++.++..|+..+..++... +. ......++|.+..++++++ +.++..|+.+|+.++...+..
T Consensus 165 l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~--~~--~~~~~~l~~~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~~~-- 237 (588)
T 1b3u_A 165 LRQYFRNLCSDDTPMVRRAAASKLGEFAKVL--EL--DNVKSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQE-- 237 (588)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHHTS--CH--HHHHHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCHH--
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh--cH--HhHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHhCCHH--
Confidence 3566666777889999999999999887653 21 1223567899999998887 899999999999988643321
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC
Q 009636 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (530)
Q Consensus 154 ~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~ 233 (530)
.....+++.+..++.++++.+|..++.+|+.++..... ......+++.++.++ .+.+..++..+++++..++...
T Consensus 238 -~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~ 312 (588)
T 1b3u_A 238 -DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLM-KDCEAEVRAAASHKVKEFCENL 312 (588)
T ss_dssp -HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHTS
T ss_pred -HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHHh
Confidence 12234688888999888999999999999999753211 112334678888888 7788999999999999999875
Q ss_pred CCCCh--hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhH
Q 009636 234 PQPPF--DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311 (530)
Q Consensus 234 ~~~~~--~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~n 311 (530)
+.... .....++|.+..++.+.++.++..++++++.++..-... .....+++.+..++.+.++.++..++.+++.
T Consensus 313 ~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~ 389 (588)
T 1b3u_A 313 SADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD---NTIEHLLPLFLAQLKDECPEVRLNIISNLDC 389 (588)
T ss_dssp CTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH---HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHH
T ss_pred ChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh---HHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 43221 345778899999999999999999999999987432211 1223578889999999999999999999988
Q ss_pred hhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHhCcHHHHHHHHhcCchhHHHHH
Q 009636 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQAVIEANIIGPLVALLENAEFDIKKEA 390 (530)
Q Consensus 312 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a 390 (530)
++...... .....++|.+..++.+. +..+|..++.+++.++.. ..+ .....+++.+...+.+.+..||..|
T Consensus 390 l~~~~~~~---~~~~~~lp~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~Vr~~a 461 (588)
T 1b3u_A 390 VNEVIGIR---QLSQSLLPAIVELAEDA-KWRVRLAIIEYMPLLAGQLGVE----FFDEKLNSLCMAWLVDHVYAIREAA 461 (588)
T ss_dssp HHHHSCHH---HHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCGG----GCCHHHHHHHHHGGGCSSHHHHHHH
T ss_pred HHHhcCHH---HHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHcCHH----HHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 87543211 12245788888888887 899999999999998752 111 1122467888888998899999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHH
Q 009636 391 AWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEK 470 (530)
Q Consensus 391 ~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 470 (530)
+.++..++....++. ....+++.|..++.+++..++..+++++..+........ +. ...+..
T Consensus 462 ~~~l~~l~~~~~~~~----~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~---------~~-----~~~~~~ 523 (588)
T 1b3u_A 462 TSNLKKLVEKFGKEW----AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDI---------TT-----KHMLPT 523 (588)
T ss_dssp HHHHHHHHHHHCHHH----HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHH---------HH-----HHTHHH
T ss_pred HHHHHHHHHHhCchh----HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHH---------HH-----HHHHHH
Confidence 999999987433332 234578888888888999999999999999986543210 12 234577
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhCC
Q 009636 471 IESLQTHDNAEIYEKSVKLLETYWL 495 (530)
Q Consensus 471 l~~l~~~~~~~v~~~a~~il~~~~~ 495 (530)
|..+..+++++|+..+...+..++.
T Consensus 524 l~~~l~d~~~~Vr~~a~~~l~~l~~ 548 (588)
T 1b3u_A 524 VLRMAGDPVANVRFNVAKSLQKIGP 548 (588)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHGG
T ss_pred HHhhCCCCCchHHHHHHHHHHHHHH
Confidence 7777888999999999988888764
No 43
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.74 E-value=3.3e-16 Score=163.20 Aligned_cols=333 Identities=16% Similarity=0.159 Sum_probs=225.2
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009636 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 153 (530)
.++.+.+.+.++++.++..|++++.++.. ..... .++|.+.+++.+++ +.+|..|++++.++...+++...
T Consensus 87 ~~n~l~kdL~~~n~~ir~~AL~~L~~i~~---~~~~~-----~l~~~l~~~L~d~~-~~VRk~A~~al~~i~~~~p~~~~ 157 (591)
T 2vgl_B 87 AVNSFVKDCEDPNPLIRALAVRTMGCIRV---DKITE-----YLCEPLRKCLKDED-PYVRKTAAVCVAKLHDINAQMVE 157 (591)
T ss_dssp THHHHGGGSSSSSHHHHHHHHHHHHTCCS---GGGHH-----HHHHHHHHHSSCSC-HHHHHHHHHHHHHHHHSSCCCHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHcCCh---HHHHH-----HHHHHHHHHcCCCC-hHHHHHHHHHHHHHHhhChhhcc
Confidence 45566666777788888888777776631 12222 24677899999887 99999999999999986665432
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC
Q 009636 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (530)
Q Consensus 154 ~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~ 233 (530)
+.++++.|..+|.++++.++..|+++|+.++.+.+..+......+.+..|+..+ .+.++..+..++.++..++...
T Consensus 158 ---~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l-~~~~~~~q~~il~~l~~l~~~~ 233 (591)
T 2vgl_B 158 ---DQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTAL-NECTEWGQIFILDCLSNYNPKD 233 (591)
T ss_dssp ---HHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHTSCCCS
T ss_pred ---cccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcC-CCCCchHHHHHHHHHHHhCCCC
Confidence 246789999999999999999999999999987764311111223466677777 4556777777888887776332
Q ss_pred CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC---ChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHh
Q 009636 234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG---TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG 310 (530)
Q Consensus 234 ~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~ 310 (530)
......+++.+..++++.++.|+..+++++.++... +++..+.+. ..+.+.|+.++ ++++.++..|+.+++
T Consensus 234 ----~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~-~~d~~vr~~aL~~l~ 307 (591)
T 2vgl_B 234 ----DREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLL-SGEPEVQYVALRNIN 307 (591)
T ss_dssp ----HHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHT-TSCHHHHHHHHHHHH
T ss_pred ----hHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHh-cCCccHHHHHHHHHH
Confidence 233467888899999999999999999999998742 233334333 25567777665 478899999999999
Q ss_pred HhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHH
Q 009636 311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEA 390 (530)
Q Consensus 311 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a 390 (530)
.++...+..... .+..+. .+.++ +..+|..|++++.+++... ++. .+++.|...+.+.+.+++..+
T Consensus 308 ~i~~~~p~~~~~-----~~~~~~-~~~~d-~~~Ir~~al~~L~~l~~~~--nv~-----~iv~~L~~~l~~~d~~~r~~~ 373 (591)
T 2vgl_B 308 LIVQKRPEILKQ-----EIKVFF-VKYND-PIYVKLEKLDIMIRLASQA--NIA-----QVLAELKEYATEVDVDFVRKA 373 (591)
T ss_dssp HHHHHCCSTTTT-----CTTTTS-CCTTS-CHHHHHHHHHHHHHTCCSS--THH-----HHHHHHHHHTTSSCHHHHHHH
T ss_pred HHHHhChHHHHH-----HHHhhe-eccCC-hHHHHHHHHHHHHHHCChh--hHH-----HHHHHHHHHHhcCCHHHHHHH
Confidence 998754432211 111111 11233 4677778888777776532 121 245566677777777788888
Q ss_pred HHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhh
Q 009636 391 AWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGE 445 (530)
Q Consensus 391 ~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~ 445 (530)
++++++++... +.... .+++.|++++......++..++.++..++...+
T Consensus 374 v~aI~~la~~~-~~~~~-----~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p 422 (591)
T 2vgl_B 374 VRAIGRCAIKV-EQSAE-----RCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYP 422 (591)
T ss_dssp HHHHHHHHTTC-HHHHH-----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhC-hhHHH-----HHHHHHHHHHcccchHHHHHHHHHHHHHHHHCc
Confidence 88888777653 22222 246677777776666666666666666665443
No 44
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.73 E-value=1.1e-14 Score=145.71 Aligned_cols=416 Identities=13% Similarity=0.138 Sum_probs=294.0
Q ss_pred CCHHHHHHhhcC--CChHHHHHHHHHHHHhhcCCCCC----------------cHHHHH-HcCCHHHHHHhhcCCCCHHH
Q 009636 73 ENLPVMVAGVWS--NDSGVQYECTTQFRKLLSIERSP----------------PIEEVI-RSGVVPRFVEFLLREDYPQL 133 (530)
Q Consensus 73 ~~l~~l~~~l~s--~~~~~~~~a~~~l~~l~~~~~~~----------------~~~~~~-~~g~v~~Lv~ll~~~~~~~i 133 (530)
.+++.++..|+. +|.++...++..|..+.+....+ ..+.++ +.+.++.|+.+|++.+ ..+
T Consensus 60 ~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~d-f~v 138 (651)
T 3grl_A 60 QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFD-FHV 138 (651)
T ss_dssp HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCC-HHH
T ss_pred hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCcc-HHH
Confidence 378999999986 57788888999998888754321 122333 4577999999999888 899
Q ss_pred HHHHHHHHHHHhcCChh-hHHHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc
Q 009636 134 QFEAAWALTNIASGTSE-HTKVVID-HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN 211 (530)
Q Consensus 134 ~~~a~~~L~~l~~~~~~-~~~~~~~-~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~ 211 (530)
+..++.+|..++...++ ..+.+.. .++++.|+.+|++..+.+|..++..|.+|+.+++..++.+.-.|+++.|+.++.
T Consensus 139 R~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~ 218 (651)
T 3grl_A 139 RWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIIT 218 (651)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHH
Confidence 99999999999997776 5666664 489999999999999999999999999999999999999998899999999995
Q ss_pred CCC---chhHHHHHHHHhhhhccCCC-CCChhhhhchHHHHHHhhcCCChh------HHHH---HHHHHHHhccC-----
Q 009636 212 GQP---KLSMLRNATWTLSNFCRGKP-QPPFDQVSPALPALAHLIHSNDDE------VLTD---ACWALSYLSDG----- 273 (530)
Q Consensus 212 ~~~---~~~~~~~a~~~L~~L~~~~~-~~~~~~~~~~l~~L~~ll~~~d~~------v~~~---a~~~l~~l~~~----- 273 (530)
... ...+...|+.++.+|.+.++ +.......+++|.|..++..+++. ...+ ++.++.-++..
T Consensus 219 ~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~ 298 (651)
T 3grl_A 219 EEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPG 298 (651)
T ss_dssp HHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHH
T ss_pred hcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 322 34678899999999999974 444555678999999998754322 3333 45555555543
Q ss_pred -ChHHHHHHHHhCcHHHHHHhhCCC--CchhHHHHHHHHhHhhcCCchhhHHHhhc---------CchHHHHHhhcCCCc
Q 009636 274 -TNDKIQAVIEAGVFPRLAEFLMHP--SPSVLIPALRTVGNIVTGDDMQTQCVIEY---------QALPCLLNLLSGNYK 341 (530)
Q Consensus 274 -~~~~~~~~~~~~~l~~L~~lL~~~--~~~~~~~al~~L~nl~~~~~~~~~~~~~~---------~~l~~L~~lL~~~~~ 341 (530)
...+...+.+.|++..|+.++... ...++..|+.+++.+.++++.....+... -++..|+.++.+.+.
T Consensus 299 ~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~ 378 (651)
T 3grl_A 299 ATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQP 378 (651)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSC
T ss_pred CCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhccccc
Confidence 224566788999999999998875 56789999999999999998766665532 244445555666546
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHh----------Cc---HHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHH
Q 009636 342 KSIKKEACWTVSNITAGNREQIQAVIEA----------NI---IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKF 408 (530)
Q Consensus 342 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~----------~~---i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~ 408 (530)
..+|.+|+.++..+..++++....++.. +. -..++..+-+.|+.----|+.+|.++... +++....
T Consensus 379 ~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~-n~~~K~~ 457 (651)
T 3grl_A 379 FVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQE-NATQKEQ 457 (651)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTT-CHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcC-CHHHHHH
Confidence 8899999999999999887654444432 10 12344555556765556688888888885 4444444
Q ss_pred HHH--------c---CChHHHHhccC-CCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhc
Q 009636 409 LVI--------Q---GCIKPLCDLLV-CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQT 476 (530)
Q Consensus 409 l~~--------~---~~i~~L~~lL~-~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~ 476 (530)
+.. . -.++.+..+|. ..++.+....+..|...+..++ ..+...+.+...++.|.....
T Consensus 458 ~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~e~p----------~AV~dFL~~~s~l~~L~~~i~ 527 (651)
T 3grl_A 458 LLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLLMLLCTWLSNCP----------IAVTHFLHNSANVPFLTGQIA 527 (651)
T ss_dssp HTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHTTCH----------HHHHHHHHSTTHHHHHHHHHH
T ss_pred HHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHHHHhCCh----------HHHHHHHcCCchHHHHHHHHH
Confidence 333 1 11555556554 3455555555555554444433 335666776667888876543
Q ss_pred -C-C--CHHHHHHHHHHHHHhCCCCCCC
Q 009636 477 -H-D--NAEIYEKSVKLLETYWLDDEDE 500 (530)
Q Consensus 477 -~-~--~~~v~~~a~~il~~~~~~~~~~ 500 (530)
+ . +.-|+=.+.-++--+|+...++
T Consensus 528 ~~~~~~~~lvqGL~a~LLGi~yef~~~~ 555 (651)
T 3grl_A 528 ENLGEEEQLVQGLCALLLGISIYFNDNS 555 (651)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHTCCSC
T ss_pred hccCcchHHHHHHHHHHHHHHhhccCCC
Confidence 2 2 2346777777776665544433
No 45
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.71 E-value=1.3e-14 Score=145.34 Aligned_cols=410 Identities=16% Similarity=0.144 Sum_probs=288.6
Q ss_pred CCHHHHHHhhcCC-ChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCC-CCHHHHHHHHHHHHHHhcCChh
Q 009636 73 ENLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE-DYPQLQFEAAWALTNIASGTSE 150 (530)
Q Consensus 73 ~~l~~l~~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~-~~~~i~~~a~~~L~~l~~~~~~ 150 (530)
+.++.|.+.+.+. -.+.+..|+..|+.+...- . ..+.+++++.|+..|+.. ++.++...++.+|.++.....+
T Consensus 21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y----~-~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~ 95 (651)
T 3grl_A 21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSKKY----R-LEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEE 95 (651)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTT----T-THHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--
T ss_pred hHHHHHHHHHhhccchhHHHHHHHHHHHHHHHh----H-HHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCc
Confidence 5789999988864 4789999999999885331 1 223355699999999865 3588888999999887774432
Q ss_pred -----------------hHHHHH-hCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCch-hhhhHhhc-CChHHHHHhh
Q 009636 151 -----------------HTKVVI-DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR-CRDLVLSQ-GGLVPLLAQL 210 (530)
Q Consensus 151 -----------------~~~~~~-~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~-~~~~i~~~-~~i~~Ll~ll 210 (530)
..+.+. +.+.++.|+.+|++.+..++..++.+|..|+...+. .++.++.. ++++.|+.+|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL 175 (651)
T 3grl_A 96 EEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL 175 (651)
T ss_dssp ------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG
T ss_pred ccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH
Confidence 223333 467899999999999999999999999999988776 77777744 8999999999
Q ss_pred cCCCchhHHHHHHHHhhhhccCCCCCC-hhhhhchHHHHHHhhcCCC----hhHHHHHHHHHHHhccCChHHHHHHHHhC
Q 009636 211 NGQPKLSMLRNATWTLSNFCRGKPQPP-FDQVSPALPALAHLIHSND----DEVLTDACWALSYLSDGTNDKIQAVIEAG 285 (530)
Q Consensus 211 ~~~~~~~~~~~a~~~L~~L~~~~~~~~-~~~~~~~l~~L~~ll~~~d----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~ 285 (530)
++..+.++..++..|.+|+.+.+... .....++++.|+.++..+. ..+..+++.++.++...+..+...+.+.|
T Consensus 176 -~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~ 254 (651)
T 3grl_A 176 -ADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGS 254 (651)
T ss_dssp -GCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred -hCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcC
Confidence 77788999999999999999984443 4455799999999998654 47899999999999999988888899999
Q ss_pred cHHHHHHhhCCCCc----h--hHHH---HHHHHhHhhcCCc------hhhHHHhhcCchHHHHHhhcCCC-chhHHHHHH
Q 009636 286 VFPRLAEFLMHPSP----S--VLIP---ALRTVGNIVTGDD------MQTQCVIEYQALPCLLNLLSGNY-KKSIKKEAC 349 (530)
Q Consensus 286 ~l~~L~~lL~~~~~----~--~~~~---al~~L~nl~~~~~------~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~ 349 (530)
.++.|..++..+.. . .... ++.++.-++.... .....+.+.|+++.|+.++.... ...++.+|.
T Consensus 255 ~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al 334 (651)
T 3grl_A 255 YIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETI 334 (651)
T ss_dssp CGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred CHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHH
Confidence 99999999975432 1 2222 5566666665432 23456678999999999987653 467999999
Q ss_pred HHHHHHhcCCHHHHHHHHHhC---------cHHHHHHHHhcC-chhHHHHHHHHHHHhhcCCCHHHHHHHHHc----C--
Q 009636 350 WTVSNITAGNREQIQAVIEAN---------IIGPLVALLENA-EFDIKKEAAWAISNATSGGTHEQIKFLVIQ----G-- 413 (530)
Q Consensus 350 ~~L~nl~~~~~~~~~~l~~~~---------~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~----~-- 413 (530)
.+++.+..+++.....+.+.. ++..|+.++.+. ...+|..|+.++..+..+. .+....+... .
T Consensus 335 ~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N-~~~Q~~i~~~llp~~~~ 413 (651)
T 3grl_A 335 NTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKN-QKGQGEIVSTLLPSTID 413 (651)
T ss_dssp HHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTSSCCCC
T ss_pred HHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCC-HHHHHHHHHhcCCcccc
Confidence 999999999988777776532 344444445443 5889999999999999873 3333333322 0
Q ss_pred ----Ch---HHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcC------CCCchhhHHHhhhhccHHHHHH-HhcCCC
Q 009636 414 ----CI---KPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLG------NTDVNVFTQMIDDAEGLEKIES-LQTHDN 479 (530)
Q Consensus 414 ----~i---~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~l~~-l~~~~~ 479 (530)
.+ ..|+.-+-+.|+--.-.+..++..++...+..+... .+..++... .++.+.. |....+
T Consensus 414 ~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~n~~~K~~~l~v~l~~~~ge~~vt------liq~~~~~L~~~~~ 487 (651)
T 3grl_A 414 ATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQENATQKEQLLRVQLATSIGNPPVS------LLQQCTNILSQGSK 487 (651)
T ss_dssp CTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTCHHHHHHHTTCBCCCCTTCCCCB------HHHHHHHHTTTTCC
T ss_pred cCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcCCHHHHHHHHhCcccccCCCCccc------HHHHHHHHHhcCCc
Confidence 01 123344445566433446666777776654433210 000010111 1333333 344566
Q ss_pred HHHHHHHHHHHHHhCC
Q 009636 480 AEIYEKSVKLLETYWL 495 (530)
Q Consensus 480 ~~v~~~a~~il~~~~~ 495 (530)
+.+.--...++-.|.-
T Consensus 488 ~ri~vgyL~LL~~WL~ 503 (651)
T 3grl_A 488 IQTRVGLLMLLCTWLS 503 (651)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHh
Confidence 7776666776666543
No 46
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.69 E-value=2.4e-15 Score=141.59 Aligned_cols=258 Identities=14% Similarity=0.133 Sum_probs=202.3
Q ss_pred HHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCch
Q 009636 113 IRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR 192 (530)
Q Consensus 113 ~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~ 192 (530)
...+.++.|+..|.+++ +.++..|+++|+++.. + +.++.|+.++.++++.++..|+++|+.+......
T Consensus 20 ~~~~~i~~L~~~L~~~~-~~vr~~A~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~ 87 (280)
T 1oyz_A 20 CKKLNDDELFRLLDDHN-SLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC 87 (280)
T ss_dssp HHTSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT
T ss_pred HHHhhHHHHHHHHHcCC-HHHHHHHHHHHHccCC--c---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc
Confidence 34568999999999887 9999999999999873 2 3578899999999999999999999998643321
Q ss_pred hhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhcc
Q 009636 193 CRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD 272 (530)
Q Consensus 193 ~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~ 272 (530)
.. ..++.|...+..+.+..++..++++|..+....+ .....+++.|..++.++++.++..++++++++..
T Consensus 88 ~~------~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 88 ED------NVFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND 157 (280)
T ss_dssp HH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--
T ss_pred ch------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC
Confidence 11 1233333333367889999999999999975431 1235678999999999999999999999998753
Q ss_pred CChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHH
Q 009636 273 GTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTV 352 (530)
Q Consensus 273 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L 352 (530)
.+.++.|+.++.++++.++..|+++|+.+....+ .+++.|..++.++ ++.+|..|+++|
T Consensus 158 -----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~-~~~vR~~A~~aL 216 (280)
T 1oyz_A 158 -----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK-NEEVRIEAIIGL 216 (280)
T ss_dssp ------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCS-CHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCC-CHHHHHHHHHHH
Confidence 2578999999999999999999999999853222 3567899999988 999999999999
Q ss_pred HHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCC-CChHHHH
Q 009636 353 SNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC-PDPRIVT 431 (530)
Q Consensus 353 ~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~-~~~~~~~ 431 (530)
+++.. ...++.|+..+.+++ ++..|+++|+.+... .+++.|..++.. .+++++.
T Consensus 217 ~~~~~-----------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~~------------~~~~~L~~~l~~~~~~~~~~ 271 (280)
T 1oyz_A 217 SYRKD-----------KRVLSVLCDELKKNT--VYDDIIEAAGELGDK------------TLLPVLDTMLYKFDDNEIIT 271 (280)
T ss_dssp HHTTC-----------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCCG------------GGHHHHHHHHTTSSCCHHHH
T ss_pred HHhCC-----------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCch------------hhhHHHHHHHhcCCCcHHHH
Confidence 99852 357889999997654 999999999998541 467888888864 5677777
Q ss_pred HHHHHHH
Q 009636 432 VCLEGLE 438 (530)
Q Consensus 432 ~al~~l~ 438 (530)
.+++.+.
T Consensus 272 ~~~~~l~ 278 (280)
T 1oyz_A 272 SAIDKLK 278 (280)
T ss_dssp HHHHHHT
T ss_pred HHHHHhh
Confidence 7777664
No 47
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.68 E-value=7.7e-15 Score=152.84 Aligned_cols=332 Identities=15% Similarity=0.123 Sum_probs=246.5
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009636 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (530)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (530)
..++.+++.+.+++..++..+...+..++... +... .-+++.+.+-|.+++ +.++..|+++|+++.. ++..
T Consensus 49 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~--~e~~----~l~~n~l~kdL~~~n-~~ir~~AL~~L~~i~~--~~~~ 119 (591)
T 2vgl_B 49 SLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQ--PDMA----IMAVNSFVKDCEDPN-PLIRALAVRTMGCIRV--DKIT 119 (591)
T ss_dssp GGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHS--HHHH----HTTHHHHGGGSSSSS-HHHHHHHHHHHHTCCS--GGGH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC--chHH----HHHHHHHHHHcCCCC-HHHHHHHHHHHHcCCh--HHHH
Confidence 36788999999999999988888888776431 2111 224677888888887 9999999999999863 5544
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009636 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (530)
Q Consensus 153 ~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~ 232 (530)
..+ ++.+.+++.++++.+|..|++++.+++...++ .+...++++.+..++ .+.++.++..|+++|..++..
T Consensus 120 ~~l-----~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL-~d~d~~V~~~A~~aL~~i~~~ 190 (591)
T 2vgl_B 120 EYL-----CEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLI-ADSNPMVVANAVAALSEISES 190 (591)
T ss_dssp HHH-----HHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHTT-SCSCHHHHHHHHHHHHHHTTS
T ss_pred HHH-----HHHHHHHcCCCChHHHHHHHHHHHHHHhhChh---hcccccHHHHHHHHh-CCCChhHHHHHHHHHHHHHhh
Confidence 433 57899999999999999999999999876554 223346788889998 788999999999999999988
Q ss_pred CCCC-ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhH
Q 009636 233 KPQP-PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311 (530)
Q Consensus 233 ~~~~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~n 311 (530)
.+.. ........++.|+..+...++..+..++.++..++..++... ..+++.+..++++.++.++..|++++..
T Consensus 191 ~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~-----~~~l~~l~~~l~~~~~~V~~ea~~~i~~ 265 (591)
T 2vgl_B 191 HPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREA-----QSICERVTPRLSHANSAVVLSAVKVLMK 265 (591)
T ss_dssp CCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHH-----HHHHHHHTTCSCSSTTHHHHHHHHHHHH
T ss_pred CCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHH-----HHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 6533 233345567777887878889999999999988876544332 2567888889999999999999999999
Q ss_pred hhcC---CchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHH
Q 009636 312 IVTG---DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKK 388 (530)
Q Consensus 312 l~~~---~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~ 388 (530)
+... +++..+.+ -..+.+.|+.++. + ++.+|..|+.+|+.++...++.... .+..+. .+.+.+..+|.
T Consensus 266 l~~~~~~~~~~~~~~-~~~~~~~L~~L~~-~-d~~vr~~aL~~l~~i~~~~p~~~~~-----~~~~~~-~~~~d~~~Ir~ 336 (591)
T 2vgl_B 266 FLELLPKDSDYYNML-LKKLAPPLVTLLS-G-EPEVQYVALRNINLIVQKRPEILKQ-----EIKVFF-VKYNDPIYVKL 336 (591)
T ss_dssp SCCSCCBTTBSHHHH-HHHTHHHHHHHTT-S-CHHHHHHHHHHHHHHHHHCCSTTTT-----CTTTTS-CCTTSCHHHHH
T ss_pred HhhccCCCHHHHHHH-HHHHHHHHHHHhc-C-CccHHHHHHHHHHHHHHhChHHHHH-----HHHhhe-eccCChHHHHH
Confidence 9753 23333322 2355677776664 6 8899999999999998754432211 111121 12234589999
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhh
Q 009636 389 EAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG 444 (530)
Q Consensus 389 ~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~ 444 (530)
.|++.|.+++...+.+ .++..|..++...|.+++..+++++..+....
T Consensus 337 ~al~~L~~l~~~~nv~--------~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~ 384 (591)
T 2vgl_B 337 EKLDIMIRLASQANIA--------QVLAELKEYATEVDVDFVRKAVRAIGRCAIKV 384 (591)
T ss_dssp HHHHHHHHTCCSSTHH--------HHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCChhhHH--------HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC
Confidence 9999999998765422 24667778888889999999999998887544
No 48
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.66 E-value=1.4e-14 Score=136.26 Aligned_cols=254 Identities=14% Similarity=0.086 Sum_probs=199.7
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009636 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (530)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 152 (530)
..++.++..|.++++.++..|++.|.++.. .++++.|+.++.+++ +.++..|+++|+.+..... ..
T Consensus 23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~d~~-~~vR~~A~~aL~~l~~~~~-~~ 88 (280)
T 1oyz_A 23 LNDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKICKK-CE 88 (280)
T ss_dssp SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCCTT-TH
T ss_pred hhHHHHHHHHHcCCHHHHHHHHHHHHccCC------------chHHHHHHHHHcCCC-HHHHHHHHHHHHHhccccc-cc
Confidence 478999999999999999999999998741 235889999999888 9999999999999875322 11
Q ss_pred HHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009636 153 KVVIDHGAVPIFV-KLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (530)
Q Consensus 153 ~~~~~~g~i~~L~-~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~ 231 (530)
.. +++.|. .++.++++.++..++++|+++....+... ..+++.|+..+ .+.++.++..++++|.++..
T Consensus 89 ~~-----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l-~d~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 89 DN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITA-FDKSTNVRRATAFAISVIND 157 (280)
T ss_dssp HH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHT-TCSCHHHHHHHHHHHHTC--
T ss_pred hH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHh-hCCCHHHHHHHHHHHHhcCC
Confidence 11 234444 24567889999999999999974433221 23577888888 78899999999999998764
Q ss_pred CCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhH
Q 009636 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311 (530)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~n 311 (530)
...+|.|..++.++++.++..++++|+.+....+ .+++.|..++.++++.++..|+++|++
T Consensus 158 ----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~ 218 (280)
T 1oyz_A 158 ----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLSY 218 (280)
T ss_dssp -----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 2478999999999999999999999999854332 345788889999999999999999999
Q ss_pred hhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC-chhHHHHH
Q 009636 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA-EFDIKKEA 390 (530)
Q Consensus 312 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a 390 (530)
+.. ...++.|...+.++ + ++..|+++|+.+.. ..+++.|..++.+. +.++...+
T Consensus 219 ~~~-----------~~~~~~L~~~l~d~-~--vr~~a~~aL~~i~~-----------~~~~~~L~~~l~~~~~~~~~~~~ 273 (280)
T 1oyz_A 219 RKD-----------KRVLSVLCDELKKN-T--VYDDIIEAAGELGD-----------KTLLPVLDTMLYKFDDNEIITSA 273 (280)
T ss_dssp TTC-----------GGGHHHHHHHHTSS-S--CCHHHHHHHHHHCC-----------GGGHHHHHHHHTTSSCCHHHHHH
T ss_pred hCC-----------HhhHHHHHHHhcCc-c--HHHHHHHHHHhcCc-----------hhhhHHHHHHHhcCCCcHHHHHH
Confidence 862 35688899999865 3 89999999999843 25788999998654 67888888
Q ss_pred HHHHH
Q 009636 391 AWAIS 395 (530)
Q Consensus 391 ~~aL~ 395 (530)
..+|.
T Consensus 274 ~~~l~ 278 (280)
T 1oyz_A 274 IDKLK 278 (280)
T ss_dssp HHHHT
T ss_pred HHHhh
Confidence 77764
No 49
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.65 E-value=3.3e-14 Score=148.62 Aligned_cols=336 Identities=17% Similarity=0.128 Sum_probs=203.5
Q ss_pred hcCCCCCchHHhhhhhhHHHHHHHHhhhHHHHhhhhcc------ccCCCCCccCCCCCchhhhcCCHHHHHHhhcCCChH
Q 009636 15 KYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREG------LQNQQPLANDVNAPGTAKKLENLPVMVAGVWSNDSG 88 (530)
Q Consensus 15 ~~k~~~~~~e~~~~r~~~~~~lRk~~r~~~l~~~R~~~------~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~s~~~~ 88 (530)
..++..+.+|.+++-.....+||+.-++....+|+... ...+.. . -.....+++.+.+++..
T Consensus 18 ~ir~~~~~~~e~~~i~~e~~~ir~~l~~~~~~~k~~~l~kli~~~~~G~d---------~---~~~~~~vik~~~s~~~~ 85 (618)
T 1w63_A 18 TIRTARTQAEEREMIQKECAAIRSSFREEDNTYRCRNVAKLLYMHMLGYP---------A---HFGQLECLKLIASQKFT 85 (618)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHHHHHTTTCTTTHHHHHHHHHHHHHTTCC---------C---GGGHHHHHHHHHSSSHH
T ss_pred HHHcCCChHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHcCCC---------C---cchHHHHHHHHcCCchH
Confidence 33455566667766666677888776543222222100 011110 0 13668888999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhh
Q 009636 89 VQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL 168 (530)
Q Consensus 89 ~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll 168 (530)
.+..+.-.+..++.. .+....+ ++..|.+-|.+++ +.++..|+++|+++.. ++... .+++.+.+++
T Consensus 86 ~Krl~Yl~~~~~~~~--~~e~~~l----~in~l~kDL~~~n-~~vr~lAL~~L~~i~~--~~~~~-----~l~~~l~~~L 151 (618)
T 1w63_A 86 DKRIGYLGAMLLLDE--RQDVHLL----MTNCIKNDLNHST-QFVQGLALCTLGCMGS--SEMCR-----DLAGEVEKLL 151 (618)
T ss_dssp HHHHHHHHHHHHCCC--CHHHHHH----HHHHHHHHHSCSS-SHHHHHHHHHHHHHCC--HHHHH-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC--CcHHHHH----HHHHHHHhcCCCC-HhHHHHHHHHHHhcCC--HHHHH-----HHHHHHHHHH
Confidence 888888888888654 2222111 4677888888888 8999999999999985 44332 4568889999
Q ss_pred CCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHH
Q 009636 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPAL 248 (530)
Q Consensus 169 ~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L 248 (530)
.+.++.+|..|+.+++++....|+.. .++++.+..++ .+.++.++..|+++|..++...+.. ......++|.+
T Consensus 152 ~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL-~D~d~~V~~~Al~~L~~i~~~~~~~-~~~~~~~v~~l 224 (618)
T 1w63_A 152 KTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLL-NEKNHGVLHTSVVLLTEMCERSPDM-LAHFRKLVPQL 224 (618)
T ss_dssp HSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTST-TCCCHHHHHHHHHHHHHHCCSHHHH-HHHHHTTHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHh-CCCCHhHHHHHHHHHHHHHHhChHH-HHHHHHHHHHH
Confidence 99999999999999999987665432 24677778888 7889999999999999998764321 22334667766
Q ss_pred HHhhcC---------------CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhC------CCCchhHHHHHH
Q 009636 249 AHLIHS---------------NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM------HPSPSVLIPALR 307 (530)
Q Consensus 249 ~~ll~~---------------~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~------~~~~~~~~~al~ 307 (530)
+.+|.. .++..+..++.+++.++..++.... .+.+.|..++. +.+..+...|++
T Consensus 225 ~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~-----~~~~~L~~l~~~~~~~~~~~~aV~~ea~~ 299 (618)
T 1w63_A 225 VRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSE-----AMNDILAQVATNTETSKNVGNAILYETVL 299 (618)
T ss_dssp HHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHHHTSCCSSTHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHHhccccccchHHHHHHHHHH
Confidence 666542 4777888888888888765543211 22333333321 122345555555
Q ss_pred HHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHH
Q 009636 308 TVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIK 387 (530)
Q Consensus 308 ~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 387 (530)
++..+.. .+. +. ..+++.|..++.++ ++.+|..|+.+|+.++...+..+ ....+.++.++.+++..+|
T Consensus 300 ~i~~l~~-~~~----l~-~~a~~~L~~~L~~~-d~~vr~~aL~~L~~i~~~~p~~~-----~~~~~~i~~~l~d~d~~Ir 367 (618)
T 1w63_A 300 TIMDIKS-ESG----LR-VLAINILGRFLLNN-DKNIRYVALTSLLKTVQTDHNAV-----QRHRSTIVDCLKDLDVSIK 367 (618)
T ss_dssp HHHHSCC-CHH----HH-HHHHHHHHHHHTCS-STTTHHHHHHHHHHHHHHHHHHH-----GGGHHHHHHGGGSSCHHHH
T ss_pred HHHhcCC-CHH----HH-HHHHHHHHHHHhCC-CCchHHHHHHHHHHHHhhCHHHH-----HHHHHHHHHHccCCChhHH
Confidence 5555432 111 11 12344455555544 55555555555555554333221 1133344444555555555
Q ss_pred HHHHHHHHHhhcC
Q 009636 388 KEAAWAISNATSG 400 (530)
Q Consensus 388 ~~a~~aL~nl~~~ 400 (530)
..|+.+|..++..
T Consensus 368 ~~alelL~~l~~~ 380 (618)
T 1w63_A 368 RRAMELSFALVNG 380 (618)
T ss_dssp HHHHHHHHHHCCS
T ss_pred HHHHHHHHHHccc
Confidence 5555555555543
No 50
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.63 E-value=3.1e-14 Score=155.92 Aligned_cols=355 Identities=14% Similarity=0.183 Sum_probs=245.0
Q ss_pred CHHHHHHhhcC-------CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 009636 74 NLPVMVAGVWS-------NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS 146 (530)
Q Consensus 74 ~l~~l~~~l~s-------~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~ 146 (530)
.+|.++..+.. +++.++..|..+|..++...+.... ..+++.+.+.+.+.+ ...+..|+++++.++.
T Consensus 325 il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~-----~~l~~~l~~~l~~~~-~~~r~~a~~~l~~i~~ 398 (861)
T 2bpt_A 325 VVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHIL-----EPVLEFVEQNITADN-WRNREAAVMAFGSIMD 398 (861)
T ss_dssp HHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGH-----HHHHHHHHHHTTCSS-HHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHH-----HHHHHHHHHHcCCCC-hhHHHHHHHHHHHHHc
Confidence 45667777764 2357888899998888754321111 235677777888777 8999999999999998
Q ss_pred CCh-hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchh---hhhHhhcCChHHHHHhhcCCCchhHHHHH
Q 009636 147 GTS-EHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC---RDLVLSQGGLVPLLAQLNGQPKLSMLRNA 222 (530)
Q Consensus 147 ~~~-~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~---~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a 222 (530)
+.. +.....+. .+++.++..+.++++.++..++|+|+.++...... ... -..+++.++..+ .+. +.++..+
T Consensus 399 ~~~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~~~l~~l~~~l-~~~-~~v~~~a 473 (861)
T 2bpt_A 399 GPDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQH--LPGVVQACLIGL-QDH-PKVATNC 473 (861)
T ss_dssp SSCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTT--HHHHHHHHHHHH-TSC-HHHHHHH
T ss_pred CCCHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHH--HHHHHHHHHHHh-ccC-hHHHHHH
Confidence 643 33333332 47888999999899999999999999998542110 011 123577778888 443 8899999
Q ss_pred HHHhhhhccCCC----CCChhhhhchHHHHHHhhcCCC--hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC
Q 009636 223 TWTLSNFCRGKP----QPPFDQVSPALPALAHLIHSND--DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH 296 (530)
Q Consensus 223 ~~~L~~L~~~~~----~~~~~~~~~~l~~L~~ll~~~d--~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~ 296 (530)
+|++.+++.... ..-......+++.|..++.+.+ +.++..++.+++.++..........+. .+++.++..+..
T Consensus 474 ~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~ 552 (861)
T 2bpt_A 474 SWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQ 552 (861)
T ss_dssp HHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHH
Confidence 999999987532 1122345677888888888544 789999999999988654433332332 355666665542
Q ss_pred C---------------CchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCch-hHHHHHHHHHHHHhcCCH
Q 009636 297 P---------------SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKK-SIKKEACWTVSNITAGNR 360 (530)
Q Consensus 297 ~---------------~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~-~v~~~a~~~L~nl~~~~~ 360 (530)
. ...++..++.++++++...+...... -..+++.+..++... +. .++..++++++.++....
T Consensus 553 ~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~~l~~~l~~~l~~~-~~~~v~~~~~~~l~~l~~~~~ 630 (861)
T 2bpt_A 553 TMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPV-ADMLMGLFFRLLEKK-DSAFIEDDVFYAISALAASLG 630 (861)
T ss_dssp HTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGG-HHHHHHHHHHHHHST-TGGGTHHHHHHHHHHHHHHHG
T ss_pred HHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHH-HHHHHHHHHHHHccC-CCCcHHHHHHHHHHHHHHHHh
Confidence 1 34567789999999987554322111 235778888888877 66 899999999999986432
Q ss_pred HHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCC--hHHHHHHHHHHH
Q 009636 361 EQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPD--PRIVTVCLEGLE 438 (530)
Q Consensus 361 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~--~~~~~~al~~l~ 438 (530)
......+. .+++.|...+.+.++.++..++.++..++.........++ ..+++.+...+.+.+ +.++..++.++.
T Consensus 631 ~~~~~~l~-~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~vr~~~~~~l~ 707 (861)
T 2bpt_A 631 KGFEKYLE-TFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYS--DAMMNVLAQMISNPNARRELKPAVLSVFG 707 (861)
T ss_dssp GGGHHHHH-HHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHH--HHHHHHHHHHHHCTTCCTTHHHHHHHHHH
T ss_pred hhHHHHHH-HHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchH--HHHHHHHHHHhCCccccHhhhHHHHHHHH
Confidence 32222222 3888999999888889999999999999875432222222 245677777777654 789999999999
Q ss_pred HHHHhhh
Q 009636 439 NILKVGE 445 (530)
Q Consensus 439 ~ll~~~~ 445 (530)
.++....
T Consensus 708 ~l~~~~~ 714 (861)
T 2bpt_A 708 DIASNIG 714 (861)
T ss_dssp HHHHHHG
T ss_pred HHHHHhh
Confidence 9987653
No 51
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.61 E-value=1.3e-13 Score=151.08 Aligned_cols=399 Identities=10% Similarity=0.109 Sum_probs=264.1
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH--H
Q 009636 76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT--K 153 (530)
Q Consensus 76 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~--~ 153 (530)
+.+.+.+.+.++..+..|+.++..++...........+ ..+++.++..+.+++ +.++..++|+++.++....... .
T Consensus 372 ~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~~ 449 (861)
T 2bpt_A 372 EFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQS-LQVKETTAWCIGRIADSVAESIDPQ 449 (861)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHGGGSCTT
T ss_pred HHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCc-HHHHHHHHHHHHHHHHHhhhhcCCH
Confidence 44445566888999999999999998553112222222 357899999998887 9999999999999986321100 0
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCC-----chhhhhHhhcCChHHHHHhhcC-CCchhHHHHHHHHhh
Q 009636 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS-----PRCRDLVLSQGGLVPLLAQLNG-QPKLSMLRNATWTLS 227 (530)
Q Consensus 154 ~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~-----~~~~~~i~~~~~i~~Ll~ll~~-~~~~~~~~~a~~~L~ 227 (530)
.. -..+++.++..+.++ +.++..|+|+|.+++... ......+ ..+++.|+..+.. +.+..++..++.++.
T Consensus 450 ~~-~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~al~ 525 (861)
T 2bpt_A 450 QH-LPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSALT 525 (861)
T ss_dssp TT-HHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHHHH
Confidence 00 113467888888765 899999999999997532 1122222 2356777777742 334788999999999
Q ss_pred hhccCCCCCChhhhhchHHHHHHhhcCC---------------ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHH
Q 009636 228 NFCRGKPQPPFDQVSPALPALAHLIHSN---------------DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAE 292 (530)
Q Consensus 228 ~L~~~~~~~~~~~~~~~l~~L~~ll~~~---------------d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ 292 (530)
.++...+.........++|.++..+... ...++..++.++..++............ .+++.++.
T Consensus 526 ~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~ 604 (861)
T 2bpt_A 526 TMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD-MLMGLFFR 604 (861)
T ss_dssp HHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHH
T ss_pred HHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHH
Confidence 9988765433344566777777766521 3457778889998887554332221222 56777888
Q ss_pred hhCCCCc-hhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCc
Q 009636 293 FLMHPSP-SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI 371 (530)
Q Consensus 293 lL~~~~~-~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~ 371 (530)
.+.+.+. .++..++.+++.++..........+ ..+++.+...+.+. ++.++..++++++.++..........+ ..+
T Consensus 605 ~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~l 681 (861)
T 2bpt_A 605 LLEKKDSAFIEDDVFYAISALAASLGKGFEKYL-ETFSPYLLKALNQV-DSPVSITAVGFIADISNSLEEDFRRYS-DAM 681 (861)
T ss_dssp HHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHTGGGGHHHH-HHH
T ss_pred HHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHhchhccchH-HHH
Confidence 8888777 8999999999999865443322222 34888999999776 888999999999999874333333333 357
Q ss_pred HHHHHHHHhcCc--hhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCC-----------hHHHHHHHHHHH
Q 009636 372 IGPLVALLENAE--FDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPD-----------PRIVTVCLEGLE 438 (530)
Q Consensus 372 i~~L~~ll~~~~--~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~-----------~~~~~~al~~l~ 438 (530)
++.++..+.+.+ ..++..++.+++.++.........++ ..+++.+...+.... ..++..+++++.
T Consensus 682 ~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l--~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~ 759 (861)
T 2bpt_A 682 MNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYL--NDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYV 759 (861)
T ss_dssp HHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHH--HHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHH--HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 888888888764 88999999999999875333333333 235777777776431 347788888888
Q ss_pred HHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCC----CHHHHHHHHHHHHHhCC
Q 009636 439 NILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHD----NAEIYEKSVKLLETYWL 495 (530)
Q Consensus 439 ~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~----~~~v~~~a~~il~~~~~ 495 (530)
.++....... ..+...+. ..++.|.....+. +.+++..|..++..+..
T Consensus 760 ~i~~~l~~~~-------~~~~~~~~--~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~ 811 (861)
T 2bpt_A 760 GIVAGLHDKP-------EALFPYVG--TIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAA 811 (861)
T ss_dssp HHHHHTTTCH-------HHHGGGHH--HHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCH-------HHHHHHHH--HHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHH
Confidence 8885432100 00111111 1244554444332 88999999999887643
No 52
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.58 E-value=7.8e-14 Score=141.21 Aligned_cols=390 Identities=11% Similarity=0.086 Sum_probs=268.7
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCChhhH
Q 009636 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHT 152 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~-~~~i~~~a~~~L~~l~~~~~~~~ 152 (530)
.+..++..+.++|.+++..|-..|.++.... ..+.+..|+.++.+++ ++.+|..|+..|.++........
T Consensus 2 ~l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~---------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~ 72 (462)
T 1ibr_B 2 ELITILEKTVSPDRLELEAAQKFLERAAVEN---------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDI 72 (462)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC---------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHH
Confidence 3567777888999999999999998864210 1345677888887653 48999999999999976431111
Q ss_pred HH-----------HHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCC--chhHH
Q 009636 153 KV-----------VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP--KLSML 219 (530)
Q Consensus 153 ~~-----------~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~--~~~~~ 219 (530)
.. -....+-..|+..+.++++.+ ..++.+|+.++....... .-.+.++.|+..+ .+. +..++
T Consensus 73 ~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~---~w~~ll~~L~~~l-~~~~~~~~~r 147 (462)
T 1ibr_B 73 KAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVN---QWPELIPQLVANV-TNPNSTEHMK 147 (462)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT---CCTTHHHHHHHHH-HCTTCCHHHH
T ss_pred HHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccc---ccHHHHHHHHHHh-ccCCCCHHHH
Confidence 00 001123356777888877778 889999999974421100 0134688888888 445 88999
Q ss_pred HHHHHHhhhhccCC-CCCChhhhhchHHHHHHhhcCC--ChhHHHHHHHHHHHhccCChHHHH-HHHHhCcHHHHHHhhC
Q 009636 220 RNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSN--DDEVLTDACWALSYLSDGTNDKIQ-AVIEAGVFPRLAEFLM 295 (530)
Q Consensus 220 ~~a~~~L~~L~~~~-~~~~~~~~~~~l~~L~~ll~~~--d~~v~~~a~~~l~~l~~~~~~~~~-~~~~~~~l~~L~~lL~ 295 (530)
..++.+|..++... +.........+++.+..++.+. ++.++..++++++++...-.+... .....-+++.+...+.
T Consensus 148 ~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 227 (462)
T 1ibr_B 148 ESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQ 227 (462)
T ss_dssp HHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC
Confidence 99999999999753 2222334466888899999887 789999999999987644322111 0111124666777778
Q ss_pred CCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH--------------
Q 009636 296 HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE-------------- 361 (530)
Q Consensus 296 ~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~-------------- 361 (530)
+.++.++..++++++.++...+......+..++++.++..+.+. ++.++..|++.+..++.....
T Consensus 228 ~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 306 (462)
T 1ibr_B 228 CPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRP 306 (462)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHHHHhcccccccCCC
Confidence 88899999999999999875544322222226788888888887 899999999999998753110
Q ss_pred -------HHHHHHHhCcHHHHHHHHhc-------CchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCCh
Q 009636 362 -------QIQAVIEANIIGPLVALLEN-------AEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDP 427 (530)
Q Consensus 362 -------~~~~l~~~~~i~~L~~ll~~-------~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~ 427 (530)
.....+ ..++|.++..+.. .++.+|..|+.+|..++........ ..+++.+...+.++++
T Consensus 307 ~~~~~~~~~~~~~-~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~-----~~~~~~l~~~l~~~~~ 380 (462)
T 1ibr_B 307 PEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIV-----PHVLPFIKEHIKNPDW 380 (462)
T ss_dssp SSCCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHH-----HHHHHHHHHHTTCSSH
T ss_pred ccchhHHHHHHHh-hhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHH-----HHHHHHHHHHhcCCCh
Confidence 011111 3467777777743 2467999999999999875432221 2457778888899999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009636 428 RIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL 495 (530)
Q Consensus 428 ~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~ 495 (530)
.++..++.+++.+........ +...+ ...+..|..+..++++.|+..|...+.++..
T Consensus 381 ~~r~aal~~l~~l~~~~~~~~---------~~~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~ 437 (462)
T 1ibr_B 381 RYRDAAVMAFGCILEGPEPSQ---------LKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICE 437 (462)
T ss_dssp HHHHHHHHHHHHTSSSSCTTT---------TCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcHHH---------HHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 999999999999886432110 11112 3457788888899999999999999998865
No 53
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.58 E-value=1.6e-13 Score=150.61 Aligned_cols=404 Identities=14% Similarity=0.149 Sum_probs=259.1
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH--
Q 009636 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT-- 152 (530)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~-- 152 (530)
++.+...+.+.++.++..|+.++..++.......... .-..++|.++..+.+++ +.++..|+|+|++++...+...
T Consensus 368 l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~-~~~~~l~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~~~~~ 445 (876)
T 1qgr_A 368 LPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDPS-VVVRDTAAWTVGRICELLPEAAIN 445 (876)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHH-HHHHHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHHCGGGTSS
T ss_pred HHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHhCchhccc
Confidence 4445566678899999999999999876531112222 22457999999999887 9999999999999998543210
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCc---------------hhhhhHhhcCChHHHHHhhcCCC--c
Q 009636 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP---------------RCRDLVLSQGGLVPLLAQLNGQP--K 215 (530)
Q Consensus 153 ~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~---------------~~~~~i~~~~~i~~Ll~ll~~~~--~ 215 (530)
.... ..+++.++..+.++ +.++..++|+|++++.... .....+ ..+++.|+..+.... +
T Consensus 446 ~~~l-~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~~~~~ 521 (876)
T 1qgr_A 446 DVYL-APLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF--ELIVQKLLETTDRPDGHQ 521 (876)
T ss_dssp TTTH-HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH--HHHHHHHHHHTTSCSSCS
T ss_pred HHHH-HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhH--HHHHHHHHHHHhCcCcch
Confidence 0011 24567888888764 8899999999999984311 111111 235667777774322 4
Q ss_pred hhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcC----------C-C----hhHHHHHHHHHHHhccCCh-HHHH
Q 009636 216 LSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS----------N-D----DEVLTDACWALSYLSDGTN-DKIQ 279 (530)
Q Consensus 216 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~----------~-d----~~v~~~a~~~l~~l~~~~~-~~~~ 279 (530)
..++..+..++..++...+.........+++.++..+.. . | ++++..+++++..++.... ....
T Consensus 522 ~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 601 (876)
T 1qgr_A 522 NNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDAL 601 (876)
T ss_dssp TTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred hhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhh
Confidence 567788889999888876544445556777777666542 1 2 4567788999999887654 3333
Q ss_pred HHHHhCcHHHHHHhhCCCC--chhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009636 280 AVIEAGVFPRLAEFLMHPS--PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (530)
Q Consensus 280 ~~~~~~~l~~L~~lL~~~~--~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 357 (530)
... ..+++.++.++.+.. +.++..++.+++.++..........+. .+++.+...+.+..++.+|..|+++++.++.
T Consensus 602 ~~~-~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~ 679 (876)
T 1qgr_A 602 QIS-DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYME-AFKPFLGIGLKNYAEYQVCLAAVGLVGDLCR 679 (876)
T ss_dssp TTH-HHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHH-HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHcCcchHHHHHHHHHHHHHHHH
Confidence 232 357788888888764 478999999999998643322222222 3678888888764367899999999999986
Q ss_pred CCHHHHHHHHHhCcHHHHHHHHhc--CchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCC----Ch----
Q 009636 358 GNREQIQAVIEANIIGPLVALLEN--AEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP----DP---- 427 (530)
Q Consensus 358 ~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~----~~---- 427 (530)
.....+...+ ..+++.++..+.+ .+.+++..+++++++++.....+...++ ..+++.|...+... ++
T Consensus 680 ~~~~~~~~~~-~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l--~~~~~~l~~~~~~~~~~~d~~~~~ 756 (876)
T 1qgr_A 680 ALQSNIIPFC-DEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYL--EVVLNTLQQASQAQVDKSDYDMVD 756 (876)
T ss_dssp HHGGGGHHHH-HHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHHHHTCCCCTTCHHHHH
T ss_pred HHHHhhhhhH-HHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHH--HHHHHHHHHHHhccCCCCChHHHH
Confidence 4323333333 3578888888887 3678999999999999863222222222 23455666666533 22
Q ss_pred ---HHHHHHHHHHHHHHHhhhhhhhc-C--CCCchhhHHHhhhhccHHHHHHHhcCC--CHHHHHHHHHHHHHhC
Q 009636 428 ---RIVTVCLEGLENILKVGEAEKNL-G--NTDVNVFTQMIDDAEGLEKIESLQTHD--NAEIYEKSVKLLETYW 494 (530)
Q Consensus 428 ---~~~~~al~~l~~ll~~~~~~~~~-~--~~~~~~~~~~l~~~~~~~~l~~l~~~~--~~~v~~~a~~il~~~~ 494 (530)
.++..++.++..++......... . .....+|...+ +..+..+..++ ++.++..|...+..+.
T Consensus 757 ~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i-----~~~l~~~~~~~~~~~~vr~~a~~~l~~l~ 826 (876)
T 1qgr_A 757 YLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFI-----LSFIDHIAGDEDHTDGVVACAAGLIGDLC 826 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHH-----HHHHHHHHTCSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHH-----HHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 67788888888887654321000 0 00112222222 34444444555 7899999988887754
No 54
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.58 E-value=3.6e-13 Score=140.71 Aligned_cols=369 Identities=14% Similarity=0.106 Sum_probs=238.3
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009636 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 153 (530)
.+..+.+.++++++.++..|++++.++.. + .+. ..+++.+..++.+++ +.++..|+.++.++...+++...
T Consensus 108 ~in~l~kDL~~~n~~vr~lAL~~L~~i~~----~---~~~-~~l~~~l~~~L~~~~-~~VRk~A~~al~~l~~~~p~~v~ 178 (618)
T 1w63_A 108 MTNCIKNDLNHSTQFVQGLALCTLGCMGS----S---EMC-RDLAGEVEKLLKTSN-SYLRKKAALCAVHVIRKVPELME 178 (618)
T ss_dssp HHHHHHHHHSCSSSHHHHHHHHHHHHHCC----H---HHH-HHHHHHHHHHHHSCC-HHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHhcCC----H---HHH-HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHChHHHH
Confidence 56778888889999999999999998852 1 122 346888999999988 99999999999999987665432
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcC--------------CCchhHH
Q 009636 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG--------------QPKLSML 219 (530)
Q Consensus 154 ~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~--------------~~~~~~~ 219 (530)
++++.+..++.+.++.++..|+++|+.++..++.....+ ...++.++.+|.. ..++-.+
T Consensus 179 -----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q 251 (618)
T 1w63_A 179 -----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQ 251 (618)
T ss_dssp -----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHH
T ss_pred -----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHH
Confidence 678888899999999999999999999987665422222 2356666665531 2355666
Q ss_pred HHHHHHhhhhccCCCCCC--------------------------------------hhhhhchHHHHHHhhcCCChhHHH
Q 009636 220 RNATWTLSNFCRGKPQPP--------------------------------------FDQVSPALPALAHLIHSNDDEVLT 261 (530)
Q Consensus 220 ~~a~~~L~~L~~~~~~~~--------------------------------------~~~~~~~l~~L~~ll~~~d~~v~~ 261 (530)
..++.+|..++...+... ......+++.|..++.+.++.++.
T Consensus 252 ~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~ 331 (618)
T 1w63_A 252 VRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRY 331 (618)
T ss_dssp HHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHH
Confidence 666666666665431100 000112445556666666677777
Q ss_pred HHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCc
Q 009636 262 DACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYK 341 (530)
Q Consensus 262 ~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~ 341 (530)
.++.++..++...+. .+. .....++.++.+++..++..|+.++..++.... .. .+++.|...+.+. +
T Consensus 332 ~aL~~L~~i~~~~p~----~~~-~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~n--v~-----~iv~eL~~~l~~~-d 398 (618)
T 1w63_A 332 VALTSLLKTVQTDHN----AVQ-RHRSTIVDCLKDLDVSIKRRAMELSFALVNGNN--IR-----GMMKELLYFLDSC-E 398 (618)
T ss_dssp HHHHHHHHHHHHHHH----HHG-GGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSS--TH-----HHHHHHHHHHHHC-C
T ss_pred HHHHHHHHHHhhCHH----HHH-HHHHHHHHHccCCChhHHHHHHHHHHHHccccc--HH-----HHHHHHHHHHHhC-C
Confidence 777777666643322 111 345567777777777788888887777775332 11 2456777777777 8
Q ss_pred hhHHHHHHHHHHHHhcCC---HH-HHHHHH----------------------H------hCcHHHHHHHHhc--CchhHH
Q 009636 342 KSIKKEACWTVSNITAGN---RE-QIQAVI----------------------E------ANIIGPLVALLEN--AEFDIK 387 (530)
Q Consensus 342 ~~v~~~a~~~L~nl~~~~---~~-~~~~l~----------------------~------~~~i~~L~~ll~~--~~~~v~ 387 (530)
.++|..++.+|+.++... .. .+..++ . ..++..|++.+.. ....+.
T Consensus 399 ~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~~ 478 (618)
T 1w63_A 399 PEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLV 478 (618)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSHHH
T ss_pred HHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcccccHHHH
Confidence 899999999999998732 11 111111 0 1134455555553 223444
Q ss_pred HHHHHHHHHhhcCC-------------CHHHHHHHHHcCChHHHHhccC--CCChHHHHHHHHHHHHHHHhhhhhhhcCC
Q 009636 388 KEAAWAISNATSGG-------------THEQIKFLVIQGCIKPLCDLLV--CPDPRIVTVCLEGLENILKVGEAEKNLGN 452 (530)
Q Consensus 388 ~~a~~aL~nl~~~~-------------~~~~~~~l~~~~~i~~L~~lL~--~~~~~~~~~al~~l~~ll~~~~~~~~~~~ 452 (530)
..++|+|+...... ++. .+++.|..+++ ..++.++..++.++.++....+..
T Consensus 479 ~~~~wilGEy~~~i~~~~~~~~~~~~~~~~--------~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~~----- 545 (618)
T 1w63_A 479 QVAAWCIGEYGDLLVSGQCEEEEPIQVTED--------EVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTCT----- 545 (618)
T ss_dssp HHHHHHHHHHHHHHTTCCCSSSCCCCCCHH--------HHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSSC-----
T ss_pred HHHHHHHhhhHHHhcccccccccccCCCHH--------HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcch-----
Confidence 45777777665310 111 12344444443 467889999999998887655321
Q ss_pred CCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009636 453 TDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL 495 (530)
Q Consensus 453 ~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~ 495 (530)
...+ ...|.....+.|.+|+++|...+.-+..
T Consensus 546 ------~~~l-----~~~L~~~~~~~d~evrdRA~~y~~ll~~ 577 (618)
T 1w63_A 546 ------VNRI-----KKVVSIYGSSIDVELQQRAVEYNALFKK 577 (618)
T ss_dssp ------HHHH-----HHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred ------HHHH-----HHHHHHhcCCCCHHHHHHHHHHHHHHcC
Confidence 1112 2345666789999999999987765443
No 55
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.58 E-value=2.7e-13 Score=148.68 Aligned_cols=276 Identities=19% Similarity=0.210 Sum_probs=194.2
Q ss_pred HHHHHHhhcCC--ChHHHHHHHHHHHHhhcCCCCCcH-HHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009636 75 LPVMVAGVWSN--DSGVQYECTTQFRKLLSIERSPPI-EEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151 (530)
Q Consensus 75 l~~l~~~l~s~--~~~~~~~a~~~l~~l~~~~~~~~~-~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~ 151 (530)
++.+...+.++ ++.++..|+.++..++..- .... .......+++.+...+.+.+ +.++..++.+|..++...+..
T Consensus 174 l~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~-~~~~~~~~~~~~il~~l~~~~~~~~-~~vr~~a~~~l~~l~~~~~~~ 251 (876)
T 1qgr_A 174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFT-KANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVKIMSLYYQY 251 (876)
T ss_dssp HHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGC-HHHHTSHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhHHH
Confidence 44555666665 6789999999999887542 1111 01111236777788877776 899999999999999866555
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCch------------------hhhhH--hhcCChHHHHHhhc
Q 009636 152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR------------------CRDLV--LSQGGLVPLLAQLN 211 (530)
Q Consensus 152 ~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~------------------~~~~i--~~~~~i~~Ll~ll~ 211 (530)
....+...+++.++..+.+.++.++..+++++..++..... ..... .-..+++.++..+.
T Consensus 252 ~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~ 331 (876)
T 1qgr_A 252 METYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLT 331 (876)
T ss_dssp CHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhh
Confidence 44444447788888888888899999999999888743100 00000 00234666677663
Q ss_pred C------CCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh-HHHHHHHHh
Q 009636 212 G------QPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN-DKIQAVIEA 284 (530)
Q Consensus 212 ~------~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~-~~~~~~~~~ 284 (530)
. +.+..++..+..++..++...+ ......+++.+...+.+.+..++..++++++.++.... +...... .
T Consensus 332 ~~~~d~~~~~~~~r~~a~~~l~~l~~~~~---~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~ 407 (876)
T 1qgr_A 332 KQDENDDDDDWNPCKAAGVCLMLLATCCE---DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-I 407 (876)
T ss_dssp CCCSSCCTTCCCHHHHHHHHHHHHHHHHG---GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-H
T ss_pred cccccccccccHHHHHHHHHHHHHHHHCc---HhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-H
Confidence 2 2356788899999988887643 13356778888888888899999999999999997654 3333333 3
Q ss_pred CcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhh-HHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC
Q 009636 285 GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQT-QCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG 358 (530)
Q Consensus 285 ~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~-~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~ 358 (530)
.+++.++..+.++++.++..|++++++++...+... ..-.-..+++.++..+.+ ++.++..++|+|++++..
T Consensus 408 ~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~--~~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 408 QAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA--EPRVASNVCWAFSSLAEA 480 (876)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS--CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHH
Confidence 688999999999999999999999999997543311 001123567788888865 478999999999999853
No 56
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.57 E-value=2.1e-14 Score=145.48 Aligned_cols=362 Identities=14% Similarity=0.094 Sum_probs=244.6
Q ss_pred CHHHHHHhhcCC--ChHHHHHHHHHHHHhhcCCCCCc----------HHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHH
Q 009636 74 NLPVMVAGVWSN--DSGVQYECTTQFRKLLSIERSPP----------IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWAL 141 (530)
Q Consensus 74 ~l~~l~~~l~s~--~~~~~~~a~~~l~~l~~~~~~~~----------~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L 141 (530)
.+..++..+.++ ++.+|..|+..|++++.....+. +..-....+-..|+..|.+++ +.+ ..++.++
T Consensus 36 ~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~-~~v-~~~~~~i 113 (462)
T 1ibr_B 36 FLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET-YRP-SSASQCV 113 (462)
T ss_dssp HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCC-SSS-CSHHHHH
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCC-chh-hHHHHHH
Confidence 345566666653 67899999999999985421000 000112234556777888777 677 8899999
Q ss_pred HHHhcCChhhHHHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHhhhCCC-chhhhhHhhcCChHHHHHhhcCCC-chh
Q 009636 142 TNIASGTSEHTKVVIDHGAVPIFVKLLYSP--SDDVREQAVWALGNIAGDS-PRCRDLVLSQGGLVPLLAQLNGQP-KLS 217 (530)
Q Consensus 142 ~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~i~~~a~~~L~nl~~~~-~~~~~~i~~~~~i~~Ll~ll~~~~-~~~ 217 (530)
+.++....... .-.++++.|+..+.++ ++.+++.++.+|+.++.+. +..-.... ..+++.++..+.+.. +..
T Consensus 114 ~~ia~~~~~~~---~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~ 189 (462)
T 1ibr_B 114 AGIACAEIPVN---QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNN 189 (462)
T ss_dssp HHHHHHHGGGT---CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHH
T ss_pred HHHHHHhcccc---ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHH
Confidence 99987321100 0136789999999887 8999999999999998643 22111111 236677778884332 789
Q ss_pred HHHHHHHHhhhhccCCC-C-CChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhC
Q 009636 218 MLRNATWTLSNFCRGKP-Q-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM 295 (530)
Q Consensus 218 ~~~~a~~~L~~L~~~~~-~-~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~ 295 (530)
++..+++++.++..... . ........+++.+...+.+.+++++..+++++..++..........+..++++.++..+.
T Consensus 190 vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~ 269 (462)
T 1ibr_B 190 VKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK 269 (462)
T ss_dssp HHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999998764321 0 011111235677777778889999999999999988654432222222266777788888
Q ss_pred CCCchhHHHHHHHHhHhhcCCch-----------------hhHHHh---hcCchHHHHHhhcCC------CchhHHHHHH
Q 009636 296 HPSPSVLIPALRTVGNIVTGDDM-----------------QTQCVI---EYQALPCLLNLLSGN------YKKSIKKEAC 349 (530)
Q Consensus 296 ~~~~~~~~~al~~L~nl~~~~~~-----------------~~~~~~---~~~~l~~L~~lL~~~------~~~~v~~~a~ 349 (530)
+.++.++..++..++.++..... ....++ -..++|.++..+... .+..+|..|+
T Consensus 270 ~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~ 349 (462)
T 1ibr_B 270 SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAG 349 (462)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHH
Confidence 88999999999999888753200 000011 134667777777432 1457999999
Q ss_pred HHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHH
Q 009636 350 WTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRI 429 (530)
Q Consensus 350 ~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~ 429 (530)
.+|..++...++ .++ ..+++.+...+.+.++.+|..|+.+|+.++.+..++.....+ ..+++.++.++.++++.+
T Consensus 350 ~~L~~l~~~~~~---~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d~~~~V 424 (462)
T 1ibr_B 350 VCLMLLATCCED---DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVV 424 (462)
T ss_dssp HHHHHHHHHTTT---THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCSCHHH
T ss_pred HHHHHHHHhccH---HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcCCCHHH
Confidence 999999874332 122 246778888888889999999999999999865432211111 457889999999999999
Q ss_pred HHHHHHHHHHHHHhhhh
Q 009636 430 VTVCLEGLENILKVGEA 446 (530)
Q Consensus 430 ~~~al~~l~~ll~~~~~ 446 (530)
+..++++|.++......
T Consensus 425 r~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 425 RDTAAWTVGRICELLPE 441 (462)
T ss_dssp HHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHhccc
Confidence 99999999999976543
No 57
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.52 E-value=1.9e-12 Score=146.98 Aligned_cols=404 Identities=12% Similarity=0.126 Sum_probs=270.5
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009636 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 153 (530)
.++.++..+.+.|++++..|...|.+.+.... .....-....+++.+++.|.+++ +.+|..|+.+|+.++...++.
T Consensus 7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~-~~~~~~~~~~il~~Ll~~L~d~~-~~vR~~A~~~L~~l~~~~~~~-- 82 (1230)
T 1u6g_C 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDS-IKLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKEY-- 82 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSC-CSCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCHH--
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHHHHcccc-cCCChhHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhCCHH--
Confidence 46899999999999999999999998875431 11111112346888999998777 999999999999999754431
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchh------hhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhh
Q 009636 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC------RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS 227 (530)
Q Consensus 154 ~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~------~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~ 227 (530)
.+ ..+++.|+..+.++++.+|..++.+|+.++...... ... .-..+++.|+..+.++.+..++..++.++.
T Consensus 83 ~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~-~~~~llp~L~~~l~~~~~~~~~~~al~~l~ 159 (1230)
T 1u6g_C 83 QV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAAN-VCKKITGRLTSAIAKQEDVSVQLEALDIMA 159 (1230)
T ss_dssp HH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHH-HHHHHHHHHHHHHSCCSCHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHH-HHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence 11 235678888888888899999999999998543321 111 122478888888843578899999999999
Q ss_pred hhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCC-chhHHHHH
Q 009636 228 NFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS-PSVLIPAL 306 (530)
Q Consensus 228 ~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~~~~al 306 (530)
.++...+..-......+++.+...+.++++.++..++.+++.++...... ++ ..+++.++..|.+.+ +.++..++
T Consensus 160 ~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~---~~-~~~l~~l~~~L~~~~~~~~r~~a~ 235 (1230)
T 1u6g_C 160 DMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---VF-VDLIEHLLSELSKNDSMSTTRTYI 235 (1230)
T ss_dssp HHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------C-TTHHHHHHHHHHHTCSSCSCTTHH
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH---HH-HHHHHHHHHHhccCCchhHHHHHH
Confidence 99865432222345778889999999889999999999999998765432 12 246777777776543 46788889
Q ss_pred HHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHh------
Q 009636 307 RTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLE------ 380 (530)
Q Consensus 307 ~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~------ 380 (530)
.+++.++...+..... .-..+++.++..+.+. ++.+|..+++++..++...++.+...+ ..+++.++..+.
T Consensus 236 ~~l~~l~~~~~~~~~~-~l~~l~~~ll~~l~d~-~~~vR~~a~~~l~~l~~~~~~~~~~~l-~~li~~ll~~l~~d~~~~ 312 (1230)
T 1u6g_C 236 QCIAAISRQAGHRIGE-YLEKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPKEVYPHV-STIINICLKYLTYDPNYN 312 (1230)
T ss_dssp HHHHHHHHHSSGGGTT-SCTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTTCCCHHHH-HHHHHHHTTCCCCC----
T ss_pred HHHHHHHHHhHHHHHH-HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHChHHHHHhH-HHHHHHHHHHhCCCCCCC
Confidence 9999988654432211 1246899999999887 899999999999999874332221111 123444433331
Q ss_pred -------------------------------cCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHH
Q 009636 381 -------------------------------NAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRI 429 (530)
Q Consensus 381 -------------------------------~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~ 429 (530)
+..+++|..|+.++..++.... +....+ -..+++.+...+.+.++.+
T Consensus 313 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~-~~~~~~-~~~l~~~l~~~l~d~~~~V 390 (1230)
T 1u6g_C 313 YDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRH-EMLPEF-YKTVSPALISRFKEREENV 390 (1230)
T ss_dssp --------------------------------CTTHHHHHHHHHHHHHHTTCC-TTHHHH-HTTTHHHHHSTTSCSSSHH
T ss_pred CcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhch-hHHHHH-HHHHHHHHHHHcCCCchHH
Confidence 1124679999999999987433 212221 2456788888898889999
Q ss_pred HHHHHHHHHHHHHhhhhhhh-cCC-------CCc-hhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009636 430 VTVCLEGLENILKVGEAEKN-LGN-------TDV-NVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL 495 (530)
Q Consensus 430 ~~~al~~l~~ll~~~~~~~~-~~~-------~~~-~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~ 495 (530)
+..++.++..++........ ... .+. ..+...+ ...++.+.....++++.++..+...+..+..
T Consensus 391 r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~ 463 (1230)
T 1u6g_C 391 KADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV--PNIVKALHKQMKEKSVKTRQCCFNMLTELVN 463 (1230)
T ss_dssp HHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHT--THHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHh--hHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 99999999888764311000 000 000 0011111 1234555565677888888877777776544
No 58
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.44 E-value=9.8e-12 Score=111.43 Aligned_cols=188 Identities=22% Similarity=0.212 Sum_probs=157.8
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCC
Q 009636 158 HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP 237 (530)
Q Consensus 158 ~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~ 237 (530)
.+.++.|+..|.++++.++..+++.|+.+.. ...++.|+.++ .+.+..++..++++|..+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~------ 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGD------ 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSCHHHHHHHHHHHHHHCC------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC------
Confidence 3568999999999999999999999998742 23688899999 67899999999999998853
Q ss_pred hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCc
Q 009636 238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD 317 (530)
Q Consensus 238 ~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~ 317 (530)
...++.|..++.++++.++..++++|+.+.. .+.++.|+.++.++++.++..|+.+|+.+..
T Consensus 80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--- 141 (211)
T 3ltm_A 80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--- 141 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---
Confidence 4578999999999999999999999998853 2467889999999999999999999999853
Q ss_pred hhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHh
Q 009636 318 MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNA 397 (530)
Q Consensus 318 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 397 (530)
...++.|..++.++ ++.+|..|+++|+.+.. ...++.|..++.++++.||..|..+|.++
T Consensus 142 --------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 142 --------ERAVEPLIKALKDE-DGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETH 201 (211)
T ss_dssp --------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-
T ss_pred --------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 24678899999888 99999999999999943 23677888999999999999999999999
Q ss_pred hcCC
Q 009636 398 TSGG 401 (530)
Q Consensus 398 ~~~~ 401 (530)
....
T Consensus 202 ~~~~ 205 (211)
T 3ltm_A 202 KSFN 205 (211)
T ss_dssp ----
T ss_pred CCCC
Confidence 7753
No 59
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.44 E-value=6.9e-12 Score=142.38 Aligned_cols=398 Identities=12% Similarity=0.121 Sum_probs=259.8
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCc----HHHHHHcCCHHHHHHhhcC-CCCHHHHHHHHHHHHHHhcCC
Q 009636 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPP----IEEVIRSGVVPRFVEFLLR-EDYPQLQFEAAWALTNIASGT 148 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~----~~~~~~~g~v~~Lv~ll~~-~~~~~i~~~a~~~L~~l~~~~ 148 (530)
.++.++..+.++++.+|..|+.++..++..-.... ...-....++|.|+..+.+ ++ +.++..|+.+|..++...
T Consensus 87 i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~-~~~~~~al~~l~~~~~~~ 165 (1230)
T 1u6g_C 87 IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQED-VSVQLEALDIMADMLSRQ 165 (1230)
T ss_dssp HHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSC-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHHh
Confidence 46777788888888899999999998876532220 1111234579999999984 55 899999999999998522
Q ss_pred hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhh
Q 009636 149 SEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228 (530)
Q Consensus 149 ~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~ 228 (530)
+....... ..+++.|+..+.++++.++..|+.+|+.++...+. .+ -...++.++..+....+...+..++.++..
T Consensus 166 ~~~l~~~~-~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~---~~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~ 240 (1230)
T 1u6g_C 166 GGLLVNFH-PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---IV-FVDLIEHLLSELSKNDSMSTTRTYIQCIAA 240 (1230)
T ss_dssp CSSCTTTH-HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHH
T ss_pred HhHHHHHH-HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH---HH-HHHHHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 11110000 23467777788888899999999999999865432 11 223577788777544445677778888888
Q ss_pred hccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC------------
Q 009636 229 FCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH------------ 296 (530)
Q Consensus 229 L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~------------ 296 (530)
++...+..-......++|.+...+.+.+++++..+++++..++........... ..+++.++..+..
T Consensus 241 l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l-~~li~~ll~~l~~d~~~~~~~d~~~ 319 (1230)
T 1u6g_C 241 ISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHV-STIINICLKYLTYDPNYNYDDEDED 319 (1230)
T ss_dssp HHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHH-HHHHHHHTTCCCCC-----------
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhH-HHHHHHHHHHhCCCCCCCCcccccc
Confidence 887643322234578899999999988999999999999888765332212122 1344444444421
Q ss_pred -------------------------CCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHH
Q 009636 297 -------------------------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWT 351 (530)
Q Consensus 297 -------------------------~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~ 351 (530)
..|.++..|+.++..++...+......+ ..+++.+...+.+. +..+|..++.+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~-~~~Vr~~a~~~ 397 (1230)
T 1u6g_C 320 ENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKER-EENVKADVFHA 397 (1230)
T ss_dssp -------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCS-SSHHHHHHHHH
T ss_pred cccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHH-HHHHHHHHHHcCCC-chHHHHHHHHH
Confidence 1356788999999999875443222232 46788888888777 88999999998
Q ss_pred HHHHhcC--C-----------------HHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHc
Q 009636 352 VSNITAG--N-----------------REQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQ 412 (530)
Q Consensus 352 L~nl~~~--~-----------------~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~ 412 (530)
+..++.. . .......+ ..+++.+...+.+.++.+|..++.+|..++.........+ -.
T Consensus 398 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~--l~ 474 (1230)
T 1u6g_C 398 YLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV-PNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQH--IP 474 (1230)
T ss_dssp HHHHHHHHCCC------------CCCHHHHHHHHT-THHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGG--HH
T ss_pred HHHHHHHhccccccccCccccccccchHHHHHHHh-hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHH--HH
Confidence 8877641 1 11112222 2467777777888899999999999999887532111111 12
Q ss_pred CChHHHHhccCCCCh--HHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHH
Q 009636 413 GCIKPLCDLLVCPDP--RIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLL 490 (530)
Q Consensus 413 ~~i~~L~~lL~~~~~--~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il 490 (530)
.+++.+...|....+ .++..++..+..++...... .+...+ ...+..|.....+++..|...|...+
T Consensus 475 ~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~---------~~~~~l--~~llp~L~~~l~d~~~~v~~~al~~l 543 (1230)
T 1u6g_C 475 VLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQ---------VFHPHV--QALVPPVVACVGDPFYKITSEALLVT 543 (1230)
T ss_dssp HHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGG---------GGHHHH--TTTHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHH---------HHHhHH--HHHHHHHHHHHcccchHHHHHHHHHH
Confidence 357788888887654 78888888888887532211 122222 13355666656667777766665555
Q ss_pred HHhC
Q 009636 491 ETYW 494 (530)
Q Consensus 491 ~~~~ 494 (530)
..+.
T Consensus 544 ~~l~ 547 (1230)
T 1u6g_C 544 QQLV 547 (1230)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 60
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.42 E-value=2.8e-11 Score=107.49 Aligned_cols=185 Identities=23% Similarity=0.226 Sum_probs=157.4
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCCh
Q 009636 159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF 238 (530)
Q Consensus 159 g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~ 238 (530)
+..+.++..|.++++.++..|+++|+.+.. .+.++.|+..+ .+.+..++..++++|..+..
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~~L~~~~~------- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGD------- 74 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC-------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC-------
Confidence 456889999999999999999999998742 13688899999 78899999999999998853
Q ss_pred hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCch
Q 009636 239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM 318 (530)
Q Consensus 239 ~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~ 318 (530)
...++.|..++.++++.++..++++|+.+.. ...++.|+.++.++++.++..|+++|+.+..
T Consensus 75 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---- 136 (201)
T 3ltj_A 75 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---- 136 (201)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----
Confidence 3578999999999999999999999998753 2467888999999999999999999999853
Q ss_pred hhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhh
Q 009636 319 QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNAT 398 (530)
Q Consensus 319 ~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~ 398 (530)
...++.|..++.++ ++.+|..|+++|+.+. .+ ..++.|..++.++++.+|..|..+|.++-
T Consensus 137 -------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~~--~~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 -------ERAVEPLIKALKDE-DGWVRQSAADALGEIG--GE---------RVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp -------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHC--SH---------HHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred -------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC--ch---------hHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 35678899999988 9999999999999993 22 26778888899999999999999999875
Q ss_pred c
Q 009636 399 S 399 (530)
Q Consensus 399 ~ 399 (530)
.
T Consensus 198 ~ 198 (201)
T 3ltj_A 198 S 198 (201)
T ss_dssp -
T ss_pred h
Confidence 3
No 61
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.41 E-value=1.2e-11 Score=110.75 Aligned_cols=188 Identities=22% Similarity=0.186 Sum_probs=157.7
Q ss_pred cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhh
Q 009636 115 SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194 (530)
Q Consensus 115 ~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~ 194 (530)
.+.++.|+.+|.+++ +.++..|++.|+.+.. .+.++.|+.++.++++.++..++++|+.+..
T Consensus 18 ~~~~~~L~~~L~~~~-~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------ 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ 79 (211)
T ss_dssp GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 457999999999887 9999999999998764 2568999999999999999999999999842
Q ss_pred hhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC
Q 009636 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT 274 (530)
Q Consensus 195 ~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~ 274 (530)
.+.++.|+..+ .+.++.++..++++|..+.. ...++.|..++.++++.++..++++|+.+..
T Consensus 80 -----~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-- 141 (211)
T 3ltm_A 80 -----ERAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-- 141 (211)
T ss_dssp -----GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--
T ss_pred -----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--
Confidence 23678888988 78899999999999998853 3578999999999999999999999999843
Q ss_pred hHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 009636 275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN 354 (530)
Q Consensus 275 ~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n 354 (530)
...++.|..++.++++.++..|+.+|+.+.. ...++.|..++.++ ++.+|..|..+|.+
T Consensus 142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETG-TGFARKVAVNYLET 200 (211)
T ss_dssp ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHC-CHHHHHHHHHHHHC
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCC-CHHHHHHHHHHHHh
Confidence 2467889999999999999999999999853 23577888899888 99999999999999
Q ss_pred HhcCC
Q 009636 355 ITAGN 359 (530)
Q Consensus 355 l~~~~ 359 (530)
+....
T Consensus 201 ~~~~~ 205 (211)
T 3ltm_A 201 HKSFN 205 (211)
T ss_dssp -----
T ss_pred cCCCC
Confidence 97643
No 62
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.39 E-value=2e-10 Score=119.58 Aligned_cols=374 Identities=13% Similarity=0.093 Sum_probs=251.7
Q ss_pred CCCchHHhhhhhhHHHHHHHHhhh----HHHHhhhhcc-----ccCCCCCccCCCCCchhhhcCCHHHHHHhhcCCChHH
Q 009636 19 AVDADEGRRRREDNMVEIRKNKRE----ESLQKKRREG-----LQNQQPLANDVNAPGTAKKLENLPVMVAGVWSNDSGV 89 (530)
Q Consensus 19 ~~~~~e~~~~r~~~~~~lRk~~r~----~~l~~~R~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~s~~~~~ 89 (530)
..+.+|.+++-.....++|++-+. ..-.+++.+. .-.+.. --.....+++.+.+++...
T Consensus 23 ~~~~~~e~~~i~~E~~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~~G~d------------~s~~~~~vvkl~~s~~~~~ 90 (621)
T 2vgl_A 23 CKSKEAEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHD------------IDFGHMEAVNLLSSNRYTE 90 (621)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHSCC------------CCSCHHHHHHGGGCSCHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCC------------CchhHHHHHHHhcCCCHHH
Confidence 455667777777777888877662 1222222110 001110 0147789999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhh-
Q 009636 90 QYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL- 168 (530)
Q Consensus 90 ~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll- 168 (530)
+..+.-.+..++... +..-.+ ++..+.+=+.+++ +.++..|+++|+++.. ++... .+++.+.+.+
T Consensus 91 Krl~YL~l~~~~~~~--~e~~~L----~iN~l~kDl~~~n-~~ir~lALr~L~~i~~--~e~~~-----~l~~~v~~~l~ 156 (621)
T 2vgl_A 91 KQIGYLFISVLVNSN--SELIRL----INNAIKNDLASRN-PTFMGLALHCIANVGS--REMAE-----AFAGEIPKILV 156 (621)
T ss_dssp HHHHHHHHHHSCCCC--HHHHHH----HHHHHHHHHHSCC-HHHHHHHHHHHHHHCC--HHHHH-----HHTTHHHHHHH
T ss_pred HHHHHHHHHHHccCC--cHHHHH----HHHHHHHhcCCCC-HHHHHHHHHHhhccCC--HHHHH-----HHHHHHHHHHh
Confidence 998988888876442 221111 3566777778888 9999999999999965 55443 3468899999
Q ss_pred -CCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHH
Q 009636 169 -YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPA 247 (530)
Q Consensus 169 -~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~ 247 (530)
.+.++.++..|+.++.++....|+. +...+.++.+.++| .+.++.++.+|+.++..++...+..-......++..
T Consensus 157 ~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~ 232 (621)
T 2vgl_A 157 AGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLL-NDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSR 232 (621)
T ss_dssp CSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHT-TCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHh-CCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 8899999999999999998755532 22247888999999 788999999999999999886532100112223333
Q ss_pred HHHhhcCC-------------ChhHHHHHHHHHHHhccCC-hHHHHHHHHhCcHHHHHHhhC---------CCC--chhH
Q 009636 248 LAHLIHSN-------------DDEVLTDACWALSYLSDGT-NDKIQAVIEAGVFPRLAEFLM---------HPS--PSVL 302 (530)
Q Consensus 248 L~~ll~~~-------------d~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~l~~L~~lL~---------~~~--~~~~ 302 (530)
|..++... ++..+..++..+..++... ++....+. +++..++..+. +.+ ..+.
T Consensus 233 L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~--~~L~~il~~~~~~~ks~~l~~~n~~~aVl 310 (621)
T 2vgl_A 233 LSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLT--ECLETILNKAQEPPKSKKVQHSNAKNAVL 310 (621)
T ss_dssp HHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHH--HHHHHHHHHHHSCCSCSSHHHHHHHHHHH
T ss_pred HHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHH--HHHHHHHHhhccCcccccccccchHHHHH
Confidence 33443221 6788899999998887643 33333222 23444443321 122 2778
Q ss_pred HHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHh-c
Q 009636 303 IPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLE-N 381 (530)
Q Consensus 303 ~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-~ 381 (530)
..|+.++..+.. .+... ..++..|..++.+. ++.+|..|+..|..++...+. . ..+ ......++..+. +
T Consensus 311 ~ea~~~i~~l~~-~~~~~-----~~~~~~L~~~L~~~-~~niry~aL~~l~~l~~~~~~-~-~~~-~~~~~~i~~~L~~d 380 (621)
T 2vgl_A 311 FEAISLIIHHDS-EPNLL-----VRACNQLGQFLQHR-ETNLRYLALESMCTLASSEFS-H-EAV-KTHIETVINALKTE 380 (621)
T ss_dssp HHHHHHHHHHCC-CHHHH-----HHHHHHHHHHSSCS-CHHHHHHHHHHHHHHTTCTTT-H-HHH-HTTHHHHHHHHTTC
T ss_pred HHHHHHHHhcCC-cHHHH-----HHHHHHHHHHhcCC-CcchHHHHHHHHHHHHhccCc-H-HHH-HHHHHHHHHHhccC
Confidence 888888888752 22211 23567788888877 899999999999999875432 1 122 246778888888 8
Q ss_pred CchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHH
Q 009636 382 AEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILK 442 (530)
Q Consensus 382 ~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~ 442 (530)
+|..++..++..|..++.. ..... ++..|...+...|.+++..++.++..+..
T Consensus 381 ~d~~Ir~~aL~lL~~l~~~---~Nv~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~la~ 433 (621)
T 2vgl_A 381 RDVSVRQRAVDLLYAMCDR---SNAQQ-----IVAEMLSYLETADYSIREEIVLKVAILAE 433 (621)
T ss_dssp CCHHHHHHHHHHHHHHCCH---HHHHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred CCHhHHHHHHHHHHHHcCh---hhHHH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 8999999999999999763 33333 45566666666788877777777777654
No 63
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.39 E-value=2.5e-11 Score=107.82 Aligned_cols=184 Identities=22% Similarity=0.190 Sum_probs=157.3
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhh
Q 009636 116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD 195 (530)
Q Consensus 116 g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~ 195 (530)
+..+.++++|.+++ +.++..|+++|+.+.. .+.++.|+.++.++++.++..++++|+.+..
T Consensus 14 ~~~~~~i~~L~~~~-~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 74 (201)
T ss_dssp HHHHHHHHHTTCSC-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------
T ss_pred cchHHHHHHhcCCC-HHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 45788999999998 9999999999998764 2467899999999999999999999999842
Q ss_pred hHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh
Q 009636 196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN 275 (530)
Q Consensus 196 ~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~ 275 (530)
...++.|+..+ .+.++.++..++++|..+.. ...++.|..++.++++.++..++++++.+..
T Consensus 75 ----~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--- 136 (201)
T 3ltj_A 75 ----ERAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--- 136 (201)
T ss_dssp ----GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC---
T ss_pred ----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---
Confidence 13678888988 77899999999999998753 3578899999999999999999999999853
Q ss_pred HHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHH
Q 009636 276 DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI 355 (530)
Q Consensus 276 ~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl 355 (530)
.+.++.|..++.++++.++..|+++|+.+.. ...++.|..++.++ ++.+|..|.++|.++
T Consensus 137 --------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 137 --------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETG-TGFARKVAVNYLETH 196 (201)
T ss_dssp --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHC-CHHHHHHHHHHHHHC
T ss_pred --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 2567889999999999999999999999842 23577888889888 999999999999987
Q ss_pred h
Q 009636 356 T 356 (530)
Q Consensus 356 ~ 356 (530)
.
T Consensus 197 ~ 197 (201)
T 3ltj_A 197 K 197 (201)
T ss_dssp C
T ss_pred H
Confidence 4
No 64
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.27 E-value=4.4e-10 Score=117.01 Aligned_cols=330 Identities=12% Similarity=0.113 Sum_probs=222.0
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhh--cCCCCHHHHHHHHHHHHHHhcCChhh
Q 009636 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFL--LREDYPQLQFEAAWALTNIASGTSEH 151 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll--~~~~~~~i~~~a~~~L~~l~~~~~~~ 151 (530)
.+..+.+.++++++.++-.|++++.++.. +. +. ..++|.+.+++ .+.+ +.++..|+.++..+...+++.
T Consensus 112 ~iN~l~kDl~~~n~~ir~lALr~L~~i~~----~e---~~-~~l~~~v~~~l~~~d~~-~~VRK~A~~al~kl~~~~p~~ 182 (621)
T 2vgl_A 112 INNAIKNDLASRNPTFMGLALHCIANVGS----RE---MA-EAFAGEIPKILVAGDTM-DSVKQSAALCLLRLYRTSPDL 182 (621)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHCC----HH---HH-HHHTTHHHHHHHCSSSC-HHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhccCC----HH---HH-HHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHHhChhh
Confidence 45677778889999999999999998842 21 22 23678888998 7777 999999999999999866654
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhh----cC--C----------Cc
Q 009636 152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQL----NG--Q----------PK 215 (530)
Q Consensus 152 ~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll----~~--~----------~~ 215 (530)
.. ..++++.+..+|.+.++.++..|+.+|..++...+.. + ...++.++..| .. . ++
T Consensus 183 ~~---~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~---~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~ 254 (621)
T 2vgl_A 183 VP---MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEE---F--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPA 254 (621)
T ss_dssp CC---CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHH---H--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEES
T ss_pred cC---chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHH---H--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCC
Confidence 32 2478999999999999999999999999998766531 1 12334444333 11 1 15
Q ss_pred hhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhh---------cCCC--hhHHHHHHHHHHHhccCChHHHHHHHHh
Q 009636 216 LSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI---------HSND--DEVLTDACWALSYLSDGTNDKIQAVIEA 284 (530)
Q Consensus 216 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll---------~~~d--~~v~~~a~~~l~~l~~~~~~~~~~~~~~ 284 (530)
+-.+...+..+..++.............+++.++..+ .+.+ ..|...++.++..+.. ..+...
T Consensus 255 ~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~----- 328 (621)
T 2vgl_A 255 PWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLLV----- 328 (621)
T ss_dssp HHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHHH-----
T ss_pred chHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCC-cHHHHH-----
Confidence 6778888888888875321111111222333333222 1222 3788888889888863 222222
Q ss_pred CcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhc-CCCchhHHHHHHHHHHHHhcCCHHHH
Q 009636 285 GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLS-GNYKKSIKKEACWTVSNITAGNREQI 363 (530)
Q Consensus 285 ~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~ 363 (530)
.++..|..+|.+.++.++..++.++..++...+.. ..+ ......++..|. ++ +..+|..++.+|..++. +.++
T Consensus 329 ~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~--~~~-~~~~~~i~~~L~~d~-d~~Ir~~aL~lL~~l~~--~~Nv 402 (621)
T 2vgl_A 329 RACNQLGQFLQHRETNLRYLALESMCTLASSEFSH--EAV-KTHIETVINALKTER-DVSVRQRAVDLLYAMCD--RSNA 402 (621)
T ss_dssp HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTH--HHH-HTTHHHHHHHHTTCC-CHHHHHHHHHHHHHHCC--HHHH
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcH--HHH-HHHHHHHHHHhccCC-CHhHHHHHHHHHHHHcC--hhhH
Confidence 35677888898899999999999999999765421 122 346778888888 77 89999999999999974 3444
Q ss_pred HHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHh
Q 009636 364 QAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKV 443 (530)
Q Consensus 364 ~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~ 443 (530)
.. ++..|...+...+.+++..++.+++.++..-.+.. . -+++.|++++......+...+...+..++..
T Consensus 403 ~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~-~-----~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~ 471 (621)
T 2vgl_A 403 QQ-----IVAEMLSYLETADYSIREEIVLKVAILAEKYAVDY-T-----WYVDTILNLIRIAGDYVSEEVWYRVIQIVIN 471 (621)
T ss_dssp HH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSST-H-----HHHHHHHHHHHHHGGGSCSHHHHHHHHHHGG
T ss_pred HH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcH-H-----HHHHHHHHHHHhhcccchHHHHHHHHHHHhC
Confidence 33 55678888888899999999999999875211111 1 1355666666544333444444555555543
No 65
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.10 E-value=9.8e-09 Score=84.41 Aligned_cols=218 Identities=15% Similarity=0.162 Sum_probs=176.5
Q ss_pred hCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCC
Q 009636 157 DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP 236 (530)
Q Consensus 157 ~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~ 236 (530)
+..++..++.+|.++-+.++.+|+..+.+++...++.... .+..|+.++..+....+......++..++...|
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P-- 102 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP-- 102 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH--
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhHHHHhCH--
Confidence 3456888999999888999999999999999888875444 466777887788888888888899999987653
Q ss_pred ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCC
Q 009636 237 PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGD 316 (530)
Q Consensus 237 ~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~ 316 (530)
....+++|.+..-..-.|+.++.+...+|..++...+.... +++.-+..++.+.+..-+..|+..++.+....
T Consensus 103 --e~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen~ 175 (253)
T 2db0_A 103 --ELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGENS 175 (253)
T ss_dssp --HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT
T ss_pred --HHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhccC
Confidence 46678899998888888999999999999999987775444 56778899999888778888888888887655
Q ss_pred chhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHH
Q 009636 317 DMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISN 396 (530)
Q Consensus 317 ~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~n 396 (530)
..+. ...+|.|..+|.+. +.-||..|.-+|.+++..++..+. + +..-++-+++.+..+++....+|+.
T Consensus 176 ~~yv-----~PfLprL~aLL~D~-deiVRaSaVEtL~~lA~~npklRk-i-----i~~kl~e~~D~S~lv~~~V~egL~r 243 (253)
T 2db0_A 176 FKYV-----NPFLPRIINLLHDG-DEIVRASAVEALVHLATLNDKLRK-V-----VIKRLEELNDTSSLVNKTVKEGISR 243 (253)
T ss_dssp HHHH-----GGGHHHHHGGGGCS-SHHHHHHHHHHHHHHHTSCHHHHH-H-----HHHHHHHCCCSCHHHHHHHHHHHHH
T ss_pred cccc-----CcchHHHHHHHcCc-chhhhHHHHHHHHHHHHcCHHHHH-H-----HHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 4433 45799999999999 999999999999999998887433 2 2234455677788899999999988
Q ss_pred hhcC
Q 009636 397 ATSG 400 (530)
Q Consensus 397 l~~~ 400 (530)
++.-
T Consensus 244 l~l~ 247 (253)
T 2db0_A 244 LLLL 247 (253)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8753
No 66
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.07 E-value=2.5e-09 Score=112.84 Aligned_cols=216 Identities=16% Similarity=0.123 Sum_probs=156.0
Q ss_pred cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHhhhCC-Cch
Q 009636 115 SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFV-KLLYSPSDDVREQAVWALGNIAGD-SPR 192 (530)
Q Consensus 115 ~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~-~ll~~~~~~i~~~a~~~L~nl~~~-~~~ 192 (530)
..++| +++.|++++ +..|..|+++|++|+. ++..+..+...+++..++ .+|.+++.+++..|+++|.||+.+ .+.
T Consensus 34 ~~i~P-ll~~L~S~~-~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d 110 (684)
T 4gmo_A 34 DKILP-VLKDLKSPD-AKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEAD 110 (684)
T ss_dssp HTTHH-HHHHHSSSC-CSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred hhHHH-HHHHcCCCC-HHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCch
Confidence 44555 556789888 8999999999999998 788888888888887765 568889999999999999999954 466
Q ss_pred hhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhcc
Q 009636 193 CRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD 272 (530)
Q Consensus 193 ~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~ 272 (530)
.+..+...|++++|+.++.. ....+..+......... .....+ .++...++.+|.+++.
T Consensus 111 ~~~~l~~~~il~~L~~~l~~---------~~~~~~~~~~~~~~~~~-~~~~~~-----------~~~~~~~l~lL~~L~e 169 (684)
T 4gmo_A 111 FCVHLYRLDVLTAIEHAAKA---------VLETLTTSEPPFSKLLK-AQQRLV-----------WDITGSLLVLIGLLAL 169 (684)
T ss_dssp HHHHHHHTTHHHHHHHHHHH---------HHHHHHCBTTBGGGSCH-HHHHHH-----------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcChHHHHHHHHHh---------hHHHHhhhccccccccH-HHHHHH-----------HHHHHHHHHHHHHHHh
Confidence 78888999999999998831 22222222211100000 001111 1244567778888888
Q ss_pred CChHHHHHHHHhCcHHHHHHhhCCC---CchhHHHHHHHHhHhhcCCchhhHHHhhcCch---HHHHHhhcCCCchhHHH
Q 009636 273 GTNDKIQAVIEAGVFPRLAEFLMHP---SPSVLIPALRTVGNIVTGDDMQTQCVIEYQAL---PCLLNLLSGNYKKSIKK 346 (530)
Q Consensus 273 ~~~~~~~~~~~~~~l~~L~~lL~~~---~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l---~~L~~lL~~~~~~~v~~ 346 (530)
.+.+....+...+.++.|+..|.+. ...++..|+.+|..++..++...+.+.+.+.. ..+..+..+ ....+.
T Consensus 170 ~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~--~~~~~~ 247 (684)
T 4gmo_A 170 ARDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATG--TDPRAV 247 (684)
T ss_dssp HCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHS--SCTTHH
T ss_pred CCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcC--CcHHHH
Confidence 8877777788888999999988543 35789999999999999998888888776643 333333333 344578
Q ss_pred HHHHHHHHHh
Q 009636 347 EACWTVSNIT 356 (530)
Q Consensus 347 ~a~~~L~nl~ 356 (530)
.+|++|.|+.
T Consensus 248 la~giL~Ni~ 257 (684)
T 4gmo_A 248 MACGVLHNVF 257 (684)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhHh
Confidence 8999999975
No 67
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.05 E-value=3.3e-08 Score=104.21 Aligned_cols=273 Identities=14% Similarity=0.137 Sum_probs=191.6
Q ss_pred CHHHHHHhhc---CCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-------CHHHHHHHHHHHHH
Q 009636 74 NLPVMVAGVW---SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-------YPQLQFEAAWALTN 143 (530)
Q Consensus 74 ~l~~l~~~l~---s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~-------~~~i~~~a~~~L~~ 143 (530)
.+..+-+.|. ++++.++.-|+..|.-+-++... . ++..|...|.+++ .+.++..|+..|+.
T Consensus 393 gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~----~-----~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 393 GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR----D-----TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH----H-----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH----H-----HHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 4555556666 56778888899888877655321 1 3666777776543 36788899999999
Q ss_pred HhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHH
Q 009636 144 IASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNAT 223 (530)
Q Consensus 144 l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~ 223 (530)
+..++... .+++.|..++.+++..+++.|+.+|+.+..+... . .++..|+..+..+.+..+++.++
T Consensus 464 a~~GS~~e-------ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn-~------~ai~~LL~~~~e~~~e~vrR~aa 529 (963)
T 4ady_A 464 AAMGSANI-------EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGK-P------EAIHDMFTYSQETQHGNITRGLA 529 (963)
T ss_dssp HSTTCCCH-------HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC-H------HHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HhcCCCCH-------HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC-H------HHHHHHHHHHhccCcHHHHHHHH
Confidence 87655321 2356788888777777788999999987433321 1 14566676665566789999999
Q ss_pred HHhhhhccCCCCCChhhhhchHHHHHHhhc-CCChhHHHHHHHHHHH--hccCChHHHHHHHHhCcHHHHHHh-hCCCCc
Q 009636 224 WTLSNFCRGKPQPPFDQVSPALPALAHLIH-SNDDEVLTDACWALSY--LSDGTNDKIQAVIEAGVFPRLAEF-LMHPSP 299 (530)
Q Consensus 224 ~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~-~~d~~v~~~a~~~l~~--l~~~~~~~~~~~~~~~~l~~L~~l-L~~~~~ 299 (530)
.+|..+..+. ...++.++..|. +.++.++..++.+++. ...++... ++.|+.. ..+.+.
T Consensus 530 lgLGll~~g~--------~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~a---------Iq~LL~~~~~d~~d 592 (963)
T 4ady_A 530 VGLALINYGR--------QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSA---------VKRLLHVAVSDSND 592 (963)
T ss_dssp HHHHHHTTTC--------GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHH---------HHHHHHHHHHCSCH
T ss_pred HHHHhhhCCC--------hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHH---------HHHHHHHhccCCcH
Confidence 9999887664 234556666655 4678888887777654 33444333 3333333 345677
Q ss_pred hhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHH
Q 009636 300 SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALL 379 (530)
Q Consensus 300 ~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll 379 (530)
.++..|+..|+.++.++++. ++.++..|.+..++.+|..|+++|+.++.+++. ..++..|..++
T Consensus 593 ~VRraAViaLGlI~~g~~e~---------v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~-------~~aid~L~~L~ 656 (963)
T 4ady_A 593 DVRRAAVIALGFVLLRDYTT---------VPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL-------QSAIDVLDPLT 656 (963)
T ss_dssp HHHHHHHHHHHHHTSSSCSS---------HHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCHHH---------HHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc-------HHHHHHHHHHc
Confidence 89999999999998877532 455555554444999999999999999987653 13667888888
Q ss_pred hcCchhHHHHHHHHHHHhhcCCC
Q 009636 380 ENAEFDIKKEAAWAISNATSGGT 402 (530)
Q Consensus 380 ~~~~~~v~~~a~~aL~nl~~~~~ 402 (530)
.+.+..|+..|+.+|+.+..+.+
T Consensus 657 ~D~d~~Vrq~Ai~ALG~Ig~gtn 679 (963)
T 4ady_A 657 KDPVDFVRQAAMIALSMILIQQT 679 (963)
T ss_dssp TCSSHHHHHHHHHHHHHHSTTCC
T ss_pred cCCCHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999987654
No 68
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.88 E-value=9.6e-09 Score=108.38 Aligned_cols=197 Identities=15% Similarity=0.087 Sum_probs=149.5
Q ss_pred hchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHH-HHhhCCCCchhHHHHHHHHhHhhcCC-chh
Q 009636 242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRL-AEFLMHPSPSVLIPALRTVGNIVTGD-DMQ 319 (530)
Q Consensus 242 ~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L-~~lL~~~~~~~~~~al~~L~nl~~~~-~~~ 319 (530)
..++|. +..|+++++..+..||++|++++. +....+.+...+++..+ ..+|.+++..++..|+++|+||+... ...
T Consensus 34 ~~i~Pl-l~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~ 111 (684)
T 4gmo_A 34 DKILPV-LKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADF 111 (684)
T ss_dssp HTTHHH-HHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred hhHHHH-HHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchH
Confidence 345554 456899999999999999999997 45556667777888765 56788899999999999999998643 466
Q ss_pred hHHHhhcCchHHHHHhhcCCC-------------c-------hhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHH
Q 009636 320 TQCVIEYQALPCLLNLLSGNY-------------K-------KSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALL 379 (530)
Q Consensus 320 ~~~~~~~~~l~~L~~lL~~~~-------------~-------~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll 379 (530)
...++..|+++.|..++.... . ..+...++++|.++|.++.+....+...+.++.|+..+
T Consensus 112 ~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L 191 (684)
T 4gmo_A 112 CVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRL 191 (684)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHH
Confidence 678889999999999885310 0 12345678899999988888888888889999999988
Q ss_pred hcC---chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCCh---HHHHhccCCCChHHHHHHHHHHHHHHH
Q 009636 380 ENA---EFDIKKEAAWAISNATSGGTHEQIKFLVIQGCI---KPLCDLLVCPDPRIVTVCLEGLENILK 442 (530)
Q Consensus 380 ~~~---~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i---~~L~~lL~~~~~~~~~~al~~l~~ll~ 442 (530)
.+. ..+++..|+.+|.+++.. +++....+.+.+.. ..+..+.+..++ .+..+++.|.+++.
T Consensus 192 ~~~~~~~~~v~~~a~~~L~~ls~d-n~~~~~~i~~~~~~~~~~~ll~~~~~~~~-~~~la~giL~Ni~~ 258 (684)
T 4gmo_A 192 ISADIAPQDIYEEAISCLTTLSED-NLKVGQAITDDQETHVYDVLLKLATGTDP-RAVMACGVLHNVFT 258 (684)
T ss_dssp HHHCCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHTCCSSCHHHHHHHHHHSSCT-THHHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHHHHhcc-CHHHHHHHHhcchHHHHHHHHHHhcCCcH-HHHHHHHHHHhHhh
Confidence 543 368999999999999986 66778887776653 333333334443 34456778888764
No 69
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.87 E-value=1.4e-07 Score=81.30 Aligned_cols=226 Identities=17% Similarity=0.159 Sum_probs=171.2
Q ss_pred hchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhH
Q 009636 242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQ 321 (530)
Q Consensus 242 ~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~ 321 (530)
...+..|..++...|+.++.+++.++..+....++......-..+++.++.++.+.+..+...|++++..+..+.+-.-+
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 45678899999999999999999999999877544444444447899999999999999999999999999987663322
Q ss_pred HHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCC
Q 009636 322 CVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG 401 (530)
Q Consensus 322 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 401 (530)
... .+...|..++.++ ++-++.+|+-.++-+--.++. .+++..+..++.+.+.+++..++.+|.+++...
T Consensus 112 ~y~--Kl~~aL~dlik~~-~~il~~eaae~Lgklkv~~~~-------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S 181 (265)
T 3b2a_A 112 TFL--KAAKTLVSLLESP-DDMMRIETIDVLSKLQPLEDS-------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSS 181 (265)
T ss_dssp HHH--HHHHHHHHHTTSC-CHHHHHHHHHHHHHCCBSCCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGC
T ss_pred HHH--HHHHHHHHHhcCC-CchHHHHHHHHhCcCCcccch-------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhccc
Confidence 222 3466788888877 899999999999998332211 136678888898889999999999999998843
Q ss_pred -CHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHh-cCCC
Q 009636 402 -THEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQ-THDN 479 (530)
Q Consensus 402 -~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~-~~~~ 479 (530)
+++. -.+++.-+-.+|+++|+.++..++.++..++...-. .| ...-+ .+.......|. -...
T Consensus 182 ~D~~i-----~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~--------~~-~~~~~--~~~~~~v~~l~~~~~~ 245 (265)
T 3b2a_A 182 ADSGH-----LTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLL--------EN-VKIEL--LKISRIVDGLVYREGA 245 (265)
T ss_dssp SSCCC-----GGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCC--------SC-CHHHH--HHHHHHHHHGGGCSSC
T ss_pred CCHHH-----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCccc--------Hh-HHHHH--HHHHHHHHHHHHhcCC
Confidence 2221 235677888899999999999999999999876322 11 11111 33455666777 6788
Q ss_pred HHHHHHHHHHHHHh
Q 009636 480 AEIYEKSVKLLETY 493 (530)
Q Consensus 480 ~~v~~~a~~il~~~ 493 (530)
|.+..+|..+-+..
T Consensus 246 ~~~~~ka~~v~~~l 259 (265)
T 3b2a_A 246 PIIRLKAKKVSDLI 259 (265)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 99999998776653
No 70
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.86 E-value=6e-07 Score=73.99 Aligned_cols=217 Identities=14% Similarity=0.163 Sum_probs=167.5
Q ss_pred hcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhc-CCChhHHHHHHHHHHHhccCChHH
Q 009636 199 SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH-SNDDEVLTDACWALSYLSDGTNDK 277 (530)
Q Consensus 199 ~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~-~~d~~v~~~a~~~l~~l~~~~~~~ 277 (530)
+..++..++.+| ++.-..++.+|+..+.+++...+ ......+..|+.+++ +..-.....+..+++.++...++.
T Consensus 30 d~~~l~~lI~~L-DDDlwtV~kNAl~vi~~i~~~~~----el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~ 104 (253)
T 2db0_A 30 DESVLKKLIELL-DDDLWTVVKNAISIIMVIAKTRE----DLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPEL 104 (253)
T ss_dssp CHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCG----GGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred hHHHHHHHHHHh-ccHHHHHHHhHHHHHHHHHHHhH----HHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHH
Confidence 445788889998 77778899999999999998754 234555666666655 445667788889999998877765
Q ss_pred HHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009636 278 IQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (530)
Q Consensus 278 ~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 357 (530)
+. ++++.+..-..-++++++....++|..++..++... .+++.-+..++.+. +..=|..|...++-+..
T Consensus 105 v~-----~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~-----~~v~rdi~smltsk-d~~Dkl~aLnFi~alGe 173 (253)
T 2db0_A 105 VK-----SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLM-----ASIVRDFMSMLSSK-NREDKLTALNFIEAMGE 173 (253)
T ss_dssp HH-----HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHH-----HHHHHHHHHHTSCS-SHHHHHHHHHHHHTCCT
T ss_pred HH-----hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHH-----HHHHHHHHHHhcCC-ChHHHHHHHHHHHHHhc
Confidence 55 567888888888999999999999999999888654 35567788999977 77677777777777766
Q ss_pred CCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHH
Q 009636 358 GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGL 437 (530)
Q Consensus 358 ~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l 437 (530)
.....+ ..++|.|+.+|.+.+.-||..|..+|.+++.. ++..++. +...+.-+++.+..+....-.+|
T Consensus 174 n~~~yv-----~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~-npklRki------i~~kl~e~~D~S~lv~~~V~egL 241 (253)
T 2db0_A 174 NSFKYV-----NPFLPRIINLLHDGDEIVRASAVEALVHLATL-NDKLRKV------VIKRLEELNDTSSLVNKTVKEGI 241 (253)
T ss_dssp TTHHHH-----GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTS-CHHHHHH------HHHHHHHCCCSCHHHHHHHHHHH
T ss_pred cCcccc-----CcchHHHHHHHcCcchhhhHHHHHHHHHHHHc-CHHHHHH------HHHHHHHhcCcHHHHHHHHHHHH
Confidence 555443 35789999999999999999999999999997 4554333 33444556777778888888888
Q ss_pred HHHHHh
Q 009636 438 ENILKV 443 (530)
Q Consensus 438 ~~ll~~ 443 (530)
..+.-.
T Consensus 242 ~rl~l~ 247 (253)
T 2db0_A 242 SRLLLL 247 (253)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 888654
No 71
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.86 E-value=1.5e-07 Score=89.34 Aligned_cols=278 Identities=13% Similarity=0.075 Sum_probs=163.9
Q ss_pred CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009636 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (530)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 153 (530)
....+++.+.++|...+...--.+..++... .+.+ + ++..|.+=+++++ +-++-.|+++|+++.. ++...
T Consensus 69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~-~e~i--L----v~Nsl~kDl~~~N-~~iR~lALRtL~~I~~--~~m~~ 138 (355)
T 3tjz_B 69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCIA-EDVI--I----VTSSLTKDMTGKE-DSYRGPAVRALCQITD--STMLQ 138 (355)
T ss_dssp HHHHHHGGGGCCCHHHHHHHHHHHHHHTTTS-SCGG--G----GHHHHHHHHHSSC-HHHHHHHHHHHHHHCC--TTTHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCH-HHHH--H----HHHHHHhhcCCCc-HhHHHHHHHHHhcCCC--HHHHH
Confidence 5677888999999999988888888776542 2222 1 4677888888888 9999999999999987 44443
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC
Q 009636 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (530)
Q Consensus 154 ~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~ 233 (530)
. +.+.+.+.+.+.++-++..|+.+...+....|+.. .+++..+-+++ .+.++.++.+|+.++..++..+
T Consensus 139 ~-----l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v-----~~~~~~l~~ll-~d~n~~V~~~Al~lL~ei~~~d 207 (355)
T 3tjz_B 139 A-----IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV-----KRWVNEAQEAA-SSDNIMVQYHALGLLYHVRKND 207 (355)
T ss_dssp H-----HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHT-TCSSHHHHHHHHHHHHHHHTTC
T ss_pred H-----HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH-----HHHHHHHHHHh-cCCCccHHHHHHHHHHHHHhhc
Confidence 3 35778889999999999999999999988877532 25888888888 7788899999999999998753
Q ss_pred CCCChhhhhchHHHHHHhhcCC---ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHh
Q 009636 234 PQPPFDQVSPALPALAHLIHSN---DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG 310 (530)
Q Consensus 234 ~~~~~~~~~~~l~~L~~ll~~~---d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~ 310 (530)
...+..++.-+... ++..+...++.+..++..++. -....+++.+...|++.++.+...|++++.
T Consensus 208 --------~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~----~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~ 275 (355)
T 3tjz_B 208 --------RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDG----SRDSPLFDFIESCLRNKHEMVVYEAASAIV 275 (355)
T ss_dssp --------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC---------------------CCCCCSSHHHHHHHHHHHT
T ss_pred --------hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccch----hhHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 11333344444332 455555566666555544311 122367788889999999999999999999
Q ss_pred HhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHH
Q 009636 311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEA 390 (530)
Q Consensus 311 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a 390 (530)
.+...... .. ..++..|..++.++ ++.+|..|...|..++...|..++. .-..+.+++.+++..+...|
T Consensus 276 ~l~~~~~~----~~-~~a~~~L~~fLss~-d~niryvaLr~L~~l~~~~P~~v~~-----~n~~ie~li~d~n~sI~t~A 344 (355)
T 3tjz_B 276 NLPGCSAK----EL-APAVSVLQLFCSSP-KAALRYAAVRTLNKVAMKHPSAVTA-----CNLDLENLVTDANRSIATLA 344 (355)
T ss_dssp C----------------CCCTHHHHHHSS-SSSSHHHHHHCC--------------------------------------
T ss_pred hccCCCHH----HH-HHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHCcHHHHH-----HHHHHHHHccCCcHhHHHHH
Confidence 88652221 11 34456677778888 8999999999999998876664432 33456677888887776666
Q ss_pred HHHHH
Q 009636 391 AWAIS 395 (530)
Q Consensus 391 ~~aL~ 395 (530)
+.+|.
T Consensus 345 ittll 349 (355)
T 3tjz_B 345 ITTLL 349 (355)
T ss_dssp -----
T ss_pred HHHhh
Confidence 55553
No 72
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.85 E-value=1.6e-06 Score=84.17 Aligned_cols=322 Identities=11% Similarity=0.106 Sum_probs=196.2
Q ss_pred CCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCc---hhhhhHhhcCCh-HHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009636 158 HGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSP---RCRDLVLSQGGL-VPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (530)
Q Consensus 158 ~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~---~~~~~i~~~~~i-~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~ 232 (530)
..++..++.+|.. .+.++.+..+..+..+..+.+ .....+...... ..+........+.-....++.++..++..
T Consensus 76 ~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~ 155 (480)
T 1ho8_A 76 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN 155 (480)
T ss_dssp STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred chHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence 3456778888875 678899999999999987776 322232322221 22333332444555556666666666544
Q ss_pred CCCCChhhhhchHH--HHHHhhcCC-ChhHHHHHHHHHHHhccCChHHHHHHHHh--CcHHHHHHhhCC----C------
Q 009636 233 KPQPPFDQVSPALP--ALAHLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEA--GVFPRLAEFLMH----P------ 297 (530)
Q Consensus 233 ~~~~~~~~~~~~l~--~L~~ll~~~-d~~v~~~a~~~l~~l~~~~~~~~~~~~~~--~~l~~L~~lL~~----~------ 297 (530)
.+. .......++. -+...+.+. +...+.-++.++..+...+.. ...+.+. +.++.++.++.. .
T Consensus 156 ~~~-~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~-R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~ 233 (480)
T 1ho8_A 156 GLH-NVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEY-RDVIWLHEKKFMPTLFKILQRATDSQLATRIV 233 (480)
T ss_dssp TTC-CHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHH-HHHHHTTHHHHHHHHHHHHHHHHC--------
T ss_pred CCc-cHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhH-HHHHHHcccchhHHHHHHHHHhhccccccccc
Confidence 322 3333344444 344445442 344455577777777765443 3334432 235555443321 1
Q ss_pred -------CchhHHHHHHHHhHhhcCCchhhHHHhhcCch--HHHHHhhcCCCchhHHHHHHHHHHHHhcCCH----HHHH
Q 009636 298 -------SPSVLIPALRTVGNIVTGDDMQTQCVIEYQAL--PCLLNLLSGNYKKSIKKEACWTVSNITAGNR----EQIQ 364 (530)
Q Consensus 298 -------~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l--~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~----~~~~ 364 (530)
...++..++.+++-++.. +.....+...++. +.|+.+++......+-+-+..++.|+....+ ..+.
T Consensus 234 ~~~~~~~~~Ql~Y~~ll~iWlLSF~-~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~ 312 (480)
T 1ho8_A 234 ATNSNHLGIQLQYHSLLLIWLLTFN-PVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIK 312 (480)
T ss_dssp -----CCHHHHHHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHH
T ss_pred cccCCCccHHHHHHHHHHHHHHHcC-HHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHH
Confidence 234678889999888764 4455555555543 6677778766578899999999999988542 2233
Q ss_pred -HHHHhCcHHHHHHHHhcC---chhHHHHHHHHHHHhh---------------------cCCC--------HHHHHHHHH
Q 009636 365 -AVIEANIIGPLVALLENA---EFDIKKEAAWAISNAT---------------------SGGT--------HEQIKFLVI 411 (530)
Q Consensus 365 -~l~~~~~i~~L~~ll~~~---~~~v~~~a~~aL~nl~---------------------~~~~--------~~~~~~l~~ 411 (530)
.++..++ +.++..|... |+++....-.....+- .-.. .+....|.+
T Consensus 313 ~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e 391 (480)
T 1ho8_A 313 QLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKK 391 (480)
T ss_dssp HHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSS
T ss_pred HHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHh
Confidence 2333445 4455555443 6665544332222111 0000 111112222
Q ss_pred c--CChHHHHhccCC----------CChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCC
Q 009636 412 Q--GCIKPLCDLLVC----------PDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDN 479 (530)
Q Consensus 412 ~--~~i~~L~~lL~~----------~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~ 479 (530)
. .+++.|+.+|++ .|+.++..|+.=|+.+++..+. .+..+++.||.+.+.+|++|+|
T Consensus 392 ~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~-----------gr~i~~~lg~K~~VM~Lm~h~d 460 (480)
T 1ho8_A 392 DNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPE-----------SIDVLDKTGGKADIMELLNHSD 460 (480)
T ss_dssp GGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTT-----------HHHHHHHHSHHHHHHHHTSCSS
T ss_pred cchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcc-----------hhHHHHHcCcHHHHHHHhcCCC
Confidence 2 237788888873 4778899999999999988776 3678889999999999999999
Q ss_pred HHHHHHHHHHHHHhC
Q 009636 480 AEIYEKSVKLLETYW 494 (530)
Q Consensus 480 ~~v~~~a~~il~~~~ 494 (530)
++|+..|...++++.
T Consensus 461 ~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 461 SRVKYEALKATQAII 475 (480)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998864
No 73
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.80 E-value=1.3e-06 Score=92.36 Aligned_cols=271 Identities=14% Similarity=0.118 Sum_probs=186.4
Q ss_pred CHHHHHHhhc---CCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCC--------HHHHHHHHHHHHh
Q 009636 117 VVPRFVEFLL---REDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPS--------DDVREQAVWALGN 185 (530)
Q Consensus 117 ~v~~Lv~ll~---~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~--------~~i~~~a~~~L~n 185 (530)
++..|-..|. +++ +.++.-|+.+|+.+..+... . ++..|...+.+++ +.++..|+..||-
T Consensus 393 gl~~L~~yL~~~~s~~-~~ik~GAllaLGli~ag~~~--~------~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 393 GKKVMAPYLPGSRASS-RFIKGGSLYGLGLIYAGFGR--D------TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHHHHTTTSTTSCCSC-HHHHHHHHHHHHHHTTTTTH--H------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCc-HHHHHHHHHHHHHhcCCCcH--H------HHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 3555666665 344 88999999999999986543 1 3566777776544 6788889999998
Q ss_pred hhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhh-cCCChhHHHHHH
Q 009636 186 IAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI-HSNDDEVLTDAC 264 (530)
Q Consensus 186 l~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll-~~~d~~v~~~a~ 264 (530)
+..++. +.. ++..|..++. +.+..+...++.+|..+..+..+ ..++..|+..+ .+.+..++..++
T Consensus 464 a~~GS~--~ee-----v~e~L~~~L~-dd~~~~~~~AalALGli~vGTgn------~~ai~~LL~~~~e~~~e~vrR~aa 529 (963)
T 4ady_A 464 AAMGSA--NIE-----VYEALKEVLY-NDSATSGEAAALGMGLCMLGTGK------PEAIHDMFTYSQETQHGNITRGLA 529 (963)
T ss_dssp HSTTCC--CHH-----HHHHHHHHHH-TCCHHHHHHHHHHHHHHHTTCCC------HHHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HhcCCC--CHH-----HHHHHHHHHh-cCCHHHHHHHHHHHhhhhcccCC------HHHHHHHHHHHhccCcHHHHHHHH
Confidence 764432 112 4566777773 34445666888888877554322 23344444433 455788999999
Q ss_pred HHHHHhccCChHHHHHHHHhCcHHHHHHhhC-CCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchh
Q 009636 265 WALSYLSDGTNDKIQAVIEAGVFPRLAEFLM-HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKS 343 (530)
Q Consensus 265 ~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~ 343 (530)
.+|+.+..+.++.. +.++..|. +.++.++..++.+++--..+.... ..++.|+..+.++.+..
T Consensus 530 lgLGll~~g~~e~~---------~~li~~L~~~~dp~vRygaa~alglAyaGTGn~-------~aIq~LL~~~~~d~~d~ 593 (963)
T 4ady_A 530 VGLALINYGRQELA---------DDLITKMLASDESLLRYGGAFTIALAYAGTGNN-------SAVKRLLHVAVSDSNDD 593 (963)
T ss_dssp HHHHHHTTTCGGGG---------HHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH-------HHHHHHHHHHHHCSCHH
T ss_pred HHHHhhhCCChHHH---------HHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHhccCCcHH
Confidence 99998876666433 44445554 467888888888887655544432 23455555554443788
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHH-HhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcc
Q 009636 344 IKKEACWTVSNITAGNREQIQAVIEANIIGPLVAL-LENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLL 422 (530)
Q Consensus 344 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~l-l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL 422 (530)
+|..|+.+|+.++.++++ .++.++.. +++.++.+|..|+++|+.+..+.... .+++.|..++
T Consensus 594 VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~--------~aid~L~~L~ 656 (963)
T 4ady_A 594 VRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ--------SAIDVLDPLT 656 (963)
T ss_dssp HHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH--------HHHHHHHHHc
Confidence 999999999999877643 45666664 45679999999999999998753211 2577888889
Q ss_pred CCCChHHHHHHHHHHHHHHHh
Q 009636 423 VCPDPRIVTVCLEGLENILKV 443 (530)
Q Consensus 423 ~~~~~~~~~~al~~l~~ll~~ 443 (530)
++.+..|+..|+.+|+.+...
T Consensus 657 ~D~d~~Vrq~Ai~ALG~Ig~g 677 (963)
T 4ady_A 657 KDPVDFVRQAAMIALSMILIQ 677 (963)
T ss_dssp TCSSHHHHHHHHHHHHHHSTT
T ss_pred cCCCHHHHHHHHHHHHHHhcC
Confidence 999999999999999987644
No 74
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.80 E-value=1e-07 Score=90.45 Aligned_cols=315 Identities=13% Similarity=0.099 Sum_probs=176.1
Q ss_pred HhhcCC--ChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHh
Q 009636 80 AGVWSN--DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVID 157 (530)
Q Consensus 80 ~~l~s~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~ 157 (530)
+.++.. ++.-...++..+..+...+..-+..++ ..+.+.+++++.+.+ ..++.-....+.+++...++..
T Consensus 32 r~fn~~~~~~~kc~~~l~kll~l~~~G~~f~~~e~--t~lf~~v~kl~~s~d-~~lKrLvYLyl~~~~~~~~e~i----- 103 (355)
T 3tjz_B 32 RVFNETPINPRKCAHILTKILYLINQGEHLGTTEA--TEAFFAMTKLFQSND-PTLRRMCYLTIKEMSCIAEDVI----- 103 (355)
T ss_dssp GGTTSSSCCHHHHHHHHHHHHHHHHHTCCCCHHHH--HHHHHHHHGGGGCCC-HHHHHHHHHHHHHHTTTSSCGG-----
T ss_pred HHhcCCCCcHHHHHHHHHHHHHHHHCCCCCchhHH--HHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCCCHHHHH-----
Confidence 344433 444444455554444433211111111 235667788999988 8999999888888888533321
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCC
Q 009636 158 HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP 237 (530)
Q Consensus 158 ~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~ 237 (530)
=++..|.+=+.++++-++-.|+.+|++|.... .-+. ..+.+-+.+ .+.++.+++.|+.+...|....|
T Consensus 104 -Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~--m~~~-----l~~~lk~~L-~d~~pyVRk~A~l~~~kL~~~~p--- 171 (355)
T 3tjz_B 104 -IVTSSLTKDMTGKEDSYRGPAVRALCQITDST--MLQA-----IERYMKQAI-VDKVPSVSSSALVSSLHLLKCSF--- 171 (355)
T ss_dssp -GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTT--THHH-----HHHHHHHHH-TCSSHHHHHHHHHHHHHHTTTCH---
T ss_pred -HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHH--HHHH-----HHHHHHHHc-CCCCHHHHHHHHHHHHHHhccCH---
Confidence 24678888888999999999999999996443 2112 455566666 88999999999999999987653
Q ss_pred hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC---CchhHHHHHHHHhHhhc
Q 009636 238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP---SPSVLIPALRTVGNIVT 314 (530)
Q Consensus 238 ~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~---~~~~~~~al~~L~nl~~ 314 (530)
....+.++.+..++.+.++.++.+++.++..+...+... +..++..+... ++-.+...++.++.++.
T Consensus 172 -e~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~a---------~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~ 241 (355)
T 3tjz_B 172 -DVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRLA---------VSKMISKFTRHGLKSPFAYCMMIRVASRQLE 241 (355)
T ss_dssp -HHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHHH---------HHHHHHHHHSSCCSCHHHHHHHHHHHTCC--
T ss_pred -HHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchHH---------HHHHHHHHhcCCCcChHHHHHHHHHHHHhcc
Confidence 244678899999999999999999999999998765322 23334434332 34455556666666665
Q ss_pred CC-chhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHH
Q 009636 315 GD-DMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWA 393 (530)
Q Consensus 315 ~~-~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~a 393 (530)
.+ +.. ...+++.+..+|++. ++.|..+|++++..+...+.. .. ..++..|..++.++++.+|-.|+..
T Consensus 242 ~d~~~~-----~~~~~~~l~~~L~~~-~~aVvyEa~k~I~~l~~~~~~----~~-~~a~~~L~~fLss~d~niryvaLr~ 310 (355)
T 3tjz_B 242 DEDGSR-----DSPLFDFIESCLRNK-HEMVVYEAASAIVNLPGCSAK----EL-APAVSVLQLFCSSPKAALRYAAVRT 310 (355)
T ss_dssp --------------------CCCCCS-SHHHHHHHHHHHTC----------------CCCTHHHHHHSSSSSSHHHHHHC
T ss_pred ccchhh-----HHHHHHHHHHHHcCC-ChHHHHHHHHHHHhccCCCHH----HH-HHHHHHHHHHHcCCCchHHHHHHHH
Confidence 44 222 245677888889988 999999999999998552222 11 2345667777888999999999999
Q ss_pred HHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhh
Q 009636 394 ISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG 444 (530)
Q Consensus 394 L~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~ 444 (530)
|..++.. .|+... ..-..+.+++.++|..+...|+. .+++-|
T Consensus 311 L~~l~~~-~P~~v~-----~~n~~ie~li~d~n~sI~t~Ait---tllktg 352 (355)
T 3tjz_B 311 LNKVAMK-HPSAVT-----ACNLDLENLVTDANRSIATLAIT---TLLKTG 352 (355)
T ss_dssp C--------------------------------------------------
T ss_pred HHHHHHH-CcHHHH-----HHHHHHHHHccCCcHhHHHHHHH---Hhhhcc
Confidence 9998875 333222 24456778888888777665444 445443
No 75
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.76 E-value=1e-07 Score=86.93 Aligned_cols=187 Identities=14% Similarity=0.206 Sum_probs=143.9
Q ss_pred hHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhc-CCChhHHHHHHHHHHHhccCChHHHHHH
Q 009636 203 LVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH-SNDDEVLTDACWALSYLSDGTNDKIQAV 281 (530)
Q Consensus 203 i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~-~~d~~v~~~a~~~l~~l~~~~~~~~~~~ 281 (530)
.+.+...+ .+.+...+..++..|..++...+.........+++.|..++. +.+..++..++.+++.++..-.......
T Consensus 17 ~~~l~~~l-~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~ 95 (242)
T 2qk2_A 17 PKDFYDKL-EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY 95 (242)
T ss_dssp CTTHHHHH-TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred CHHHHhhh-ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 34477777 788999999999999999876322112224577888999995 8899999999999999985432222222
Q ss_pred HHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CH
Q 009636 282 IEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NR 360 (530)
Q Consensus 282 ~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~ 360 (530)
. ..+++.++..+.+.+..++..|..++..++....- ..+++.+...+.+. ++.+|..++..|+.+... .+
T Consensus 96 ~-~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~-------~~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~ 166 (242)
T 2qk2_A 96 A-SACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL-------EAQQESIVESLSNK-NPSVKSETALFIARALTRTQP 166 (242)
T ss_dssp H-HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH-------HHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCG
T ss_pred H-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCC
Confidence 2 25889999999999999999999999999874431 23678889999988 999999999999997653 33
Q ss_pred HH-HHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcC
Q 009636 361 EQ-IQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG 400 (530)
Q Consensus 361 ~~-~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 400 (530)
.. ....+ ..++|.|..++.+.++++|..|..+++.++..
T Consensus 167 ~~~~~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 167 TALNKKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp GGCCHHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 32 12222 25899999999999999999999999999864
No 76
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.71 E-value=6.2e-08 Score=88.45 Aligned_cols=186 Identities=13% Similarity=0.149 Sum_probs=142.1
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhh
Q 009636 162 PIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQV 241 (530)
Q Consensus 162 ~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~ 241 (530)
+.+...+.+.++..|..++..|..++...+...... ...+++.|...+.++.+..++..++.++..|+..-...-....
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 457888889999999999999999986533221110 1234666677773378899999999999999965432223455
Q ss_pred hchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCC-chh-
Q 009636 242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGD-DMQ- 319 (530)
Q Consensus 242 ~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~-~~~- 319 (530)
..++|.++..+.+.+..++..+..++..+..... .. .+++.+...+.+.++.++..++..|+.+.... +..
T Consensus 97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~-----~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~ 169 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LE-----AQQESIVESLSNKNPSVKSETALFIARALTRTQPTAL 169 (242)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCc
Confidence 7789999999999999999999999999886543 12 46788899999999999999999999976543 321
Q ss_pred hHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009636 320 TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (530)
Q Consensus 320 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 357 (530)
....+ ..+++.+..++.+. ++.+|..|..+++.++.
T Consensus 170 ~~~~l-~~l~p~l~~~l~D~-~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 170 NKKLL-KLLTTSLVKTLNEP-DPTVRDSSAEALGTLIK 205 (242)
T ss_dssp CHHHH-HHHHHHHHHHHTSS-CHHHHHHHHHHHHHHHH
T ss_pred cHHHH-HHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHH
Confidence 22222 36899999999988 99999999999999875
No 77
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.70 E-value=9.3e-07 Score=76.24 Aligned_cols=187 Identities=16% Similarity=0.177 Sum_probs=149.8
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhh
Q 009636 116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD 195 (530)
Q Consensus 116 g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~ 195 (530)
+.+..|..+|.+.| +.++..|+.+|..+...-+.......-..+++.++.++.+.+..+.-.|+.+|..|..+.|-...
T Consensus 33 ~~l~~L~~LL~dkD-~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 33 RALFLILELAGEDD-ETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHTTSSC-HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hHHHHHHHHHhccc-hHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 46888999998888 99999999999999985434444444346799999999999999999999999999988775444
Q ss_pred hHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh
Q 009636 196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN 275 (530)
Q Consensus 196 ~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~ 275 (530)
.+.. .+.++..++ .+.+.-+...+...+..+-- ......++..+..++.+.|..++..++.++.+++..+.
T Consensus 112 ~y~K--l~~aL~dli-k~~~~il~~eaae~Lgklkv------~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~ 182 (265)
T 3b2a_A 112 TFLK--AAKTLVSLL-ESPDDMMRIETIDVLSKLQP------LEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSA 182 (265)
T ss_dssp HHHH--HHHHHHHHT-TSCCHHHHHHHHHHHHHCCB------SCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCS
T ss_pred HHHH--HHHHHHHHh-cCCCchHHHHHHHHhCcCCc------ccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccC
Confidence 4333 577888888 68899999999999998821 12246678889999999999999999999999986543
Q ss_pred HHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcC
Q 009636 276 DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG 315 (530)
Q Consensus 276 ~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~ 315 (530)
+. .++ .+++.-+-.+|++.++.++..|+..+-.+.+.
T Consensus 183 D~--~i~-~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 183 DS--GHL-TLILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp SC--CCG-GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred CH--HHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 21 011 26677788899999999999999999999875
No 78
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.56 E-value=5.4e-07 Score=82.14 Aligned_cols=194 Identities=10% Similarity=0.096 Sum_probs=141.1
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHh-hhCCCchhhhhHhh-cCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCC-CCCh-
Q 009636 163 IFVKLLYSPSDDVREQAVWALGN-IAGDSPRCRDLVLS-QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP-QPPF- 238 (530)
Q Consensus 163 ~L~~ll~~~~~~i~~~a~~~L~n-l~~~~~~~~~~i~~-~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~-~~~~- 238 (530)
.+...+.+.++.-|..++..|.. ++.+.+........ ..++..|.+.+..+.+..++..++.++..|+.+-. ..-.
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 35667788999999999999999 87544332210011 12456666677567788899999999999997654 3333
Q ss_pred hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCch
Q 009636 239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM 318 (530)
Q Consensus 239 ~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~ 318 (530)
.....++|.++..+.+..+.++..+..++..++...+.......-..+++.|+..|.+.++.++..++.+|+.++.....
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~ 179 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD 179 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 56677899999999988899988888888777653211000000013677888999999999999999999999875543
Q ss_pred ---hhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009636 319 ---QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (530)
Q Consensus 319 ---~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 357 (530)
.....+...++|.+.+++.+. ++.+|..|..+++.++.
T Consensus 180 ~~~~l~~~l~~~iip~l~~~l~D~-~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 180 GYSTLQRYLKDEVVPIVIQIVNDT-QPAIRTIGFESFAILIK 220 (249)
T ss_dssp CSHHHHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 222223357999999999998 99999999999999875
No 79
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.54 E-value=6.1e-07 Score=81.83 Aligned_cols=191 Identities=12% Similarity=0.100 Sum_probs=140.6
Q ss_pred HHHhhcCCCchhHHHHHHHHhhh-hccCCCCCC--hhhhhchHHHHHHhh-cCCChhHHHHHHHHHHHhccCCh-HHHH-
Q 009636 206 LLAQLNGQPKLSMLRNATWTLSN-FCRGKPQPP--FDQVSPALPALAHLI-HSNDDEVLTDACWALSYLSDGTN-DKIQ- 279 (530)
Q Consensus 206 Ll~ll~~~~~~~~~~~a~~~L~~-L~~~~~~~~--~~~~~~~l~~L~~ll-~~~d~~v~~~a~~~l~~l~~~~~-~~~~- 279 (530)
+...+ .+.+..-+..++..|.. ++.+.+... ......++..|.+.+ ...+..++..++.+++.++.+-. ....
T Consensus 21 f~~~l-~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 21 FQERI-TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp HHHHH-TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred HHHHh-hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 45556 77889999999999999 886543222 222346688888889 67889999999999999985322 1121
Q ss_pred HHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCC
Q 009636 280 AVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN 359 (530)
Q Consensus 280 ~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~ 359 (530)
.... -+++.++..+.+....++..+..++-.++...+.......-..+++.|...|.+. ++.+|..++.+|+.++...
T Consensus 100 ~y~~-~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~ 177 (249)
T 2qk1_A 100 DYVS-LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEE 177 (249)
T ss_dssp HHHH-HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHC
T ss_pred HHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHc
Confidence 1222 4788999999999999999998888888864422110000113678889999998 9999999999999998743
Q ss_pred H---HHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009636 360 R---EQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS 399 (530)
Q Consensus 360 ~---~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 399 (530)
+ ......+...++|.|..++.+.+..||..|..+++.++.
T Consensus 178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3 334344424799999999999999999999999998875
No 80
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.46 E-value=2.8e-08 Score=81.15 Aligned_cols=121 Identities=21% Similarity=0.186 Sum_probs=92.3
Q ss_pred hchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhH
Q 009636 242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQ 321 (530)
Q Consensus 242 ~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~ 321 (530)
...++.+..+|.++++.++..++++|+.+... .++.|+.+|.++++.++..|+++|+++..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~------------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------- 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRGAAAWIIGNFQD------- 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSST------------THHHHHHGGGCSCHHHHHHHHHHHGGGCS-------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch------------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC-------
Confidence 45677888899999999999999888876421 24788899999999999999999999863
Q ss_pred HHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHh
Q 009636 322 CVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNA 397 (530)
Q Consensus 322 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 397 (530)
...++.|...+.++ ++.||..|+|+|+++.. + ..++.|+.++.+.++.|+..|+++|.++
T Consensus 72 ----~~a~~~L~~~L~d~-~~~VR~~A~~aL~~~~~--~---------~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 72 ----ERAVEPLIKLLEDD-SGFVRSGAARSLEQIGG--E---------RVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp ----HHHHHHHHHHHHHC-CTHHHHHHHHHHHHHCS--H---------HHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred ----HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc--H---------HHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 13478888999888 99999999999999852 2 3578889999988999999999998653
No 81
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.46 E-value=6.9e-05 Score=72.79 Aligned_cols=320 Identities=11% Similarity=0.077 Sum_probs=193.9
Q ss_pred CHHHHHHhhcC-CChHHHHHHHHHHHHhhcCCCC--CcHHHHHHcCCH-HHHHHhhcCCCCHHHHHHHHHHHHHHhcCCh
Q 009636 74 NLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERS--PPIEEVIRSGVV-PRFVEFLLREDYPQLQFEAAWALTNIASGTS 149 (530)
Q Consensus 74 ~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~--~~~~~~~~~g~v-~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~ 149 (530)
....+++.|.. ...++....+..+..++...+. .....+.+..-. ..+.......+++-....+..++..++....
T Consensus 78 ~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~~ 157 (480)
T 1ho8_A 78 TLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGL 157 (480)
T ss_dssp THHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTTT
T ss_pred HHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhccCC
Confidence 66788898884 5677888888899999877310 122333333222 2233322234425555666666666654332
Q ss_pred h---hHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhhhhHhhcC--ChHHHHHhhc------------
Q 009636 150 E---HTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQG--GLVPLLAQLN------------ 211 (530)
Q Consensus 150 ~---~~~~~~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~--~i~~Ll~ll~------------ 211 (530)
. ....++... -++..|.. .+...+..++.+|..+..... +|..+.+.+ .+++++..+.
T Consensus 158 ~~~~~l~~l~~~~---~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~-~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~ 233 (480)
T 1ho8_A 158 HNVKLVEKLLKNN---NLINILQNIEQMDTCYVCIRLLQELAVIPE-YRDVIWLHEKKFMPTLFKILQRATDSQLATRIV 233 (480)
T ss_dssp CCHHHHHHHHHCH---HHHHHHHCTTCHHHHHHHHHHHHHHHTSHH-HHHHHHTTHHHHHHHHHHHHHHHHC--------
T ss_pred ccHhHHHHHhhhH---HHHHHhccccCCchHHHHHHHHHHHhcchh-HHHHHHHcccchhHHHHHHHHHhhccccccccc
Confidence 2 222222111 34445544 234556678888888876554 787776543 3566654432
Q ss_pred ----CCCchhHHHHHHHHhhhhccCCCCCChhhhhch--HHHHHHhhcC-CChhHHHHHHHHHHHhccCCh----HHHH-
Q 009636 212 ----GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPA--LPALAHLIHS-NDDEVLTDACWALSYLSDGTN----DKIQ- 279 (530)
Q Consensus 212 ----~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~--l~~L~~ll~~-~d~~v~~~a~~~l~~l~~~~~----~~~~- 279 (530)
.....+++..++.|++-|+...+........++ ++.|+..++. ..+.+..-++.++.|+..... ....
T Consensus 234 ~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~ 313 (480)
T 1ho8_A 234 ATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQ 313 (480)
T ss_dssp -----CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHH
T ss_pred cccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHH
Confidence 111467788999999999987532222222232 2556666664 468899999999999997652 2222
Q ss_pred HHHHhCcHHHHHHhhCCC---CchhHHHHHHHHhHh--------h--------------cCCchhhH-HHh---------
Q 009636 280 AVIEAGVFPRLAEFLMHP---SPSVLIPALRTVGNI--------V--------------TGDDMQTQ-CVI--------- 324 (530)
Q Consensus 280 ~~~~~~~l~~L~~lL~~~---~~~~~~~al~~L~nl--------~--------------~~~~~~~~-~~~--------- 324 (530)
.++..++ ..++..|... ++++.... ..|... + .-++.+.. .+.
T Consensus 314 ~~~~~~~-l~~l~~L~~rk~~Dedl~edl-~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e 391 (480)
T 1ho8_A 314 LLLLGNA-LPTVQSLSERKYSDEELRQDI-SNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKK 391 (480)
T ss_dssp HHHHHCH-HHHHHHHHSSCCSSHHHHHHH-HHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSS
T ss_pred HHHHccc-hHHHHHHhhCCCCcHHHHHHH-HHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHh
Confidence 2333344 4455555543 33333221 111111 1 11121111 111
Q ss_pred -hcCchHHHHHhhcC---------CCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHH
Q 009636 325 -EYQALPCLLNLLSG---------NYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAI 394 (530)
Q Consensus 325 -~~~~l~~L~~lL~~---------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL 394 (530)
+..++..|.++|.+ +.++.+...||.=|+.++...|..+..+-+.|+=..+++++.++|++||.+|+.|+
T Consensus 392 ~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~av 471 (480)
T 1ho8_A 392 DNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKAT 471 (480)
T ss_dssp GGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHH
Confidence 22468899999973 22688899999999999998888888777889999999999999999999999999
Q ss_pred HHhhc
Q 009636 395 SNATS 399 (530)
Q Consensus 395 ~nl~~ 399 (530)
..+..
T Consensus 472 Qklm~ 476 (480)
T 1ho8_A 472 QAIIG 476 (480)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 82
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.45 E-value=4.3e-08 Score=80.01 Aligned_cols=120 Identities=18% Similarity=0.194 Sum_probs=92.0
Q ss_pred hCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHH
Q 009636 284 AGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQI 363 (530)
Q Consensus 284 ~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~ 363 (530)
...++.+..+|.++++.++..|+++|+.+.. + .++.|..+|.++ ++.+|..|+|+|+++.. +
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~--~----------~~~~L~~~L~d~-~~~vR~~A~~aL~~~~~--~--- 72 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD--E----------AFEPLLESLSNE-DWRIRGAAAWIIGNFQD--E--- 72 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS--T----------THHHHHHGGGCS-CHHHHHHHHHHHGGGCS--H---
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc--h----------HHHHHHHHHcCC-CHHHHHHHHHHHHhcCC--H---
Confidence 3567889999999999999999999987642 1 258899999988 99999999999999853 2
Q ss_pred HHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHH
Q 009636 364 QAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLEN 439 (530)
Q Consensus 364 ~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ 439 (530)
..++.|+..+.++++.||..|+++|.++.. + ..++.|..+++++++.++..+..+|..
T Consensus 73 ------~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~---~---------~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 73 ------RAVEPLIKLLEDDSGFVRSGAARSLEQIGG---E---------RVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp ------HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS---H---------HHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred ------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---H---------HHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 257889999999999999999999999853 2 247788888989999999999988764
No 83
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=98.44 E-value=7.9e-05 Score=81.64 Aligned_cols=338 Identities=11% Similarity=0.072 Sum_probs=187.6
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHH-HhhcCCCCHHHHHHHHHHHHHHhcCC---h--hhHHHHHh
Q 009636 84 SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFV-EFLLREDYPQLQFEAAWALTNIASGT---S--EHTKVVID 157 (530)
Q Consensus 84 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv-~ll~~~~~~~i~~~a~~~L~~l~~~~---~--~~~~~~~~ 157 (530)
..++++...++.++..+++- -+...+++.++++.++ .++. + +.++..|+.||..+.... + .....+..
T Consensus 206 ~~~~~l~~~~L~~l~s~l~W---I~i~~i~~~~ll~~l~~~~L~--~-~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~ 279 (1023)
T 4hat_C 206 GASSSLIVATLESLLRYLHW---IPYRYIYETNILELLSTKFMT--S-PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVL 279 (1023)
T ss_dssp CSSCHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHTHHHH--S-HHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHh---CCHHHhcchhHHHHHHHHHcC--C-HHHHHHHHHHHHHHHccccCCchHHHHHHHHH
Confidence 35667777888999888764 3466777889999999 8885 3 789999999999998722 2 11111110
Q ss_pred --CCChHHH--------------HHhhCCCCHHHHHHHHHHHHhhhCCC-------chhhhhHhhcCChHHHHHhhcCCC
Q 009636 158 --HGAVPIF--------------VKLLYSPSDDVREQAVWALGNIAGDS-------PRCRDLVLSQGGLVPLLAQLNGQP 214 (530)
Q Consensus 158 --~g~i~~L--------------~~ll~~~~~~i~~~a~~~L~nl~~~~-------~~~~~~i~~~~~i~~Ll~ll~~~~ 214 (530)
.+.++.+ .......+.+.....+..+..+.... +..+..+. .++..|+... ..+
T Consensus 280 lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~--~~l~~Ll~~~-~~~ 356 (1023)
T 4hat_C 280 FFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLL--NAHQYLIQLS-KIE 356 (1023)
T ss_dssp HHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHH--HHHHHHHHHT-TSS
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHH--HHHHHHHHhh-CCC
Confidence 0111111 11111234555555555555443211 11111111 1222344433 456
Q ss_pred chhHHHHHHHHhhhhccCCC--CCChhhhh----chHHHHHHhhcCCC-------------------hh--HH----HHH
Q 009636 215 KLSMLRNATWTLSNFCRGKP--QPPFDQVS----PALPALAHLIHSND-------------------DE--VL----TDA 263 (530)
Q Consensus 215 ~~~~~~~a~~~L~~L~~~~~--~~~~~~~~----~~l~~L~~ll~~~d-------------------~~--v~----~~a 263 (530)
+.++...++...+.|+...- ........ .+++.++.-+.-++ .+ .. .++
T Consensus 357 d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~ 436 (1023)
T 4hat_C 357 ERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREV 436 (1023)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHH
Confidence 78888888888777765321 11122223 33444444333221 00 01 122
Q ss_pred HHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC--CCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcC---
Q 009636 264 CWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH--PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG--- 338 (530)
Q Consensus 264 ~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~--- 338 (530)
+..+.++.. ++... -+++.+...+.+ .+|..++.+++++|.++.+.......-.-..+++.|+.++.+
T Consensus 437 L~~l~~l~~--~~~~~-----~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~ 509 (1023)
T 4hat_C 437 LVYLTHLNV--IDTEE-----IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRG 509 (1023)
T ss_dssp HHHHHHHCH--HHHHH-----HHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHhccCH--HHHHH-----HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhcccc
Confidence 222222211 11111 123344444443 579999999999999998766443333334677888888764
Q ss_pred --CCchhHHHHHHHHHHHHhcC---CHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHH------
Q 009636 339 --NYKKSIKKEACWTVSNITAG---NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIK------ 407 (530)
Q Consensus 339 --~~~~~v~~~a~~~L~nl~~~---~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~------ 407 (530)
. ...++..++|+++.++.- +++... .++..|++.+...++.++..|++++.+++..+......
T Consensus 510 ~d~-k~~v~~t~~~~lGry~~wl~~~~~~L~-----~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~ 583 (1023)
T 4hat_C 510 KDN-KAVVASDIMYVVGQYPRFLKAHWNFLR-----TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRES 583 (1023)
T ss_dssp HHH-HHHHHHHHHHHHHTCHHHHHHCHHHHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCS
T ss_pred Ccc-hHHHHHHHHHHHHHHHHHHhccHHHHH-----HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Confidence 2 445677889999998762 333222 35556777777777899999999999999854322210
Q ss_pred --HHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhh
Q 009636 408 --FLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGE 445 (530)
Q Consensus 408 --~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~ 445 (530)
++ ..++..+...+..-+++-+..+.+++..++...+
T Consensus 584 ~p~~--~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~ 621 (1023)
T 4hat_C 584 EPFI--QTIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1023)
T ss_dssp SCHH--HHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred chhH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence 10 1122333333344456666677777877776543
No 84
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.36 E-value=3.2e-05 Score=82.85 Aligned_cols=303 Identities=12% Similarity=0.131 Sum_probs=208.4
Q ss_pred cCCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC---
Q 009636 72 LENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT--- 148 (530)
Q Consensus 72 ~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~--- 148 (530)
+..+..+++.+...+......|+..+..++.+..... .+..+++..|.+.+.+.. .. +.|+.++..++...
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~k~-~~--~~a~~~~~~~~~~~~~~ 86 (986)
T 2iw3_A 13 IKVLEELFQKLSVATADNRHEIASEVASFLNGNIIEH---DVPEHFFGELAKGIKDKK-TA--ANAMQAVAHIANQSNLS 86 (986)
T ss_dssp HHHHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS---SCCHHHHHHHHHHHTSHH-HH--HHHHHHHHHHTCTTTCC
T ss_pred HHHHHHHHhhccccchhHHHHHHHHHHHHHhcccccc---ccchhHHHHHHHHHhccC-CH--HHHHHHHHHHHHhcCCC
Confidence 3455666777776556666778888888876431111 011256778888887655 23 88899999999533
Q ss_pred hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhh
Q 009636 149 SEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228 (530)
Q Consensus 149 ~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~ 228 (530)
+..-..++ +.++.++..+.+....++..|..++..++..-+...- ..+++.|+..+...........++.++..
T Consensus 87 ~~~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~ 160 (986)
T 2iw3_A 87 PSVEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSA 160 (986)
T ss_dssp TTTHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CCcccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 12222233 6789999999888889999888888877754432211 33688899988555578899999999999
Q ss_pred hccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC--ChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHH
Q 009636 229 FCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG--TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPAL 306 (530)
Q Consensus 229 L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~--~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al 306 (530)
|+...+.........++|.+...+-+..+++...+..++..+|.. +.+ +. ..+|.|++.+.+++. ...++
T Consensus 161 ~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d-~~-----~~~~~~~~~~~~p~~--~~~~~ 232 (986)
T 2iw3_A 161 MVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKD-IE-----RFIPSLIQCIADPTE--VPETV 232 (986)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTT-TG-----GGHHHHHHHHHCTTH--HHHHH
T ss_pred HHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcc-hh-----hhHHHHHHHhcChhh--hHHHH
Confidence 997654333345678899999999899999999888888777632 111 22 678999999988753 45556
Q ss_pred HHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc--CCHHHHHHHHHhCcHHHHHHHHhcC-c
Q 009636 307 RTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA--GNREQIQAVIEANIIGPLVALLENA-E 383 (530)
Q Consensus 307 ~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~~~i~~L~~ll~~~-~ 383 (530)
..|+.-..-...... .-+=.+|.|..-|... ...+++.++-++.|+|. .+|.....++. .++|.|-+....- +
T Consensus 233 ~~l~~~tfv~~v~~~--~l~~~~p~l~r~l~~~-~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~-~l~p~~~~~~~~~~~ 308 (986)
T 2iw3_A 233 HLLGATTFVAEVTPA--TLSIMVPLLSRGLNER-ETGIKRKSAVIIDNMCKLVEDPQVIAPFLG-KLLPGLKSNFATIAD 308 (986)
T ss_dssp HHHTTCCCCSCCCHH--HHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHHTTCCCHHHHHHHHT-TTHHHHHHHTTTCCS
T ss_pred HHhhcCeeEeeecch--hHHHHHHHHHhhhccC-cchhheeeEEEEcchhhhcCCHHHHhhhhh-hhhhHHHHHhhccCC
Confidence 666554332221111 1112466777777777 78899999999999998 67776666654 5777777766554 8
Q ss_pred hhHHHHHHHHHHHhh
Q 009636 384 FDIKKEAAWAISNAT 398 (530)
Q Consensus 384 ~~v~~~a~~aL~nl~ 398 (530)
|++|..|..|+..|.
T Consensus 309 pe~r~~~~~a~~~l~ 323 (986)
T 2iw3_A 309 PEAREVTLRALKTLR 323 (986)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999988888774
No 85
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.33 E-value=0.0003 Score=77.53 Aligned_cols=344 Identities=10% Similarity=0.041 Sum_probs=194.2
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC------h
Q 009636 76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT------S 149 (530)
Q Consensus 76 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~------~ 149 (530)
..++..+.+++..++..++.++..++...-...+ .++++.|++++++++ +..+..++.+|..++... +
T Consensus 88 ~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~W-----p~ll~~L~~~l~s~~-~~~~~~aL~~l~~i~~~~~~~~~~~ 161 (960)
T 1wa5_C 88 KEIVPLMISLPNNLQVQIGEAISSIADSDFPDRW-----PTLLSDLASRLSNDD-MVTNKGVLTVAHSIFKRWRPLFRSD 161 (960)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTC-----TTHHHHHHTTCCSSC-TTHHHHHHHHHHHHHGGGTTSCCCH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhhCccch-----hHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHhhcCh
Confidence 3566666666788999999999998875322222 467999999998877 788899999999998732 1
Q ss_pred hhHHHH---HhCCChHHHHH-------hhCCCCH---------HHHHHHHHHHHhhhC-CCchhhhhHhhcCChHHHHHh
Q 009636 150 EHTKVV---IDHGAVPIFVK-------LLYSPSD---------DVREQAVWALGNIAG-DSPRCRDLVLSQGGLVPLLAQ 209 (530)
Q Consensus 150 ~~~~~~---~~~g~i~~L~~-------ll~~~~~---------~i~~~a~~~L~nl~~-~~~~~~~~i~~~~~i~~Ll~l 209 (530)
+.+..+ +. ...+.+++ .+..+.. .+...++.++.++.. +.+..-...+ ...++.+..+
T Consensus 162 ~~~~~l~~~l~-~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~-~~~~~~~~~~ 239 (960)
T 1wa5_C 162 ELFLEIKLVLD-VFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNI-QVGMGIFHKY 239 (960)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTH-HHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH-HHHHHHHHHH
Confidence 222211 11 12333333 2443211 223346666666553 2232111000 1123334444
Q ss_pred hcCC-----Cc---------hhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhc-----CCChhHHHHHHHHHHHh
Q 009636 210 LNGQ-----PK---------LSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH-----SNDDEVLTDACWALSYL 270 (530)
Q Consensus 210 l~~~-----~~---------~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~-----~~d~~v~~~a~~~l~~l 270 (530)
+... .+ ..++..++.++..++...+..-......+++.....+. ..++.+...++..+..+
T Consensus 240 l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~ 319 (960)
T 1wa5_C 240 LSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAV 319 (960)
T ss_dssp HSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHH
T ss_pred HcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHH
Confidence 4211 11 24567778788777654321111223445555555554 23567788888888777
Q ss_pred ccCChHHHH-----HHHHhCcH-HHHHHhhC-----------------------CCCchhHHHHHHHHhHhhcCCchhhH
Q 009636 271 SDGTNDKIQ-----AVIEAGVF-PRLAEFLM-----------------------HPSPSVLIPALRTVGNIVTGDDMQTQ 321 (530)
Q Consensus 271 ~~~~~~~~~-----~~~~~~~l-~~L~~lL~-----------------------~~~~~~~~~al~~L~nl~~~~~~~~~ 321 (530)
+..... .. ..+. .++ ..++..+. ...+..+..|..+|..++......
T Consensus 320 ~~~~~~-~~~~~~~~~l~-~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~-- 395 (960)
T 1wa5_C 320 TRIPKY-FEIFNNESAMN-NITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVL-- 395 (960)
T ss_dssp HTSHHH-HGGGCSHHHHH-HHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHH--
T ss_pred hCcHhH-HHHHcCchHHH-HHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchh--
Confidence 654221 11 0111 122 22223321 112246777778888777644321
Q ss_pred HHhhcCchHHHHHhhc------CCCchhHHHHHHHHHHHHhcC---CH---H------HHHHHHHhCcHHHHHHHHhcC-
Q 009636 322 CVIEYQALPCLLNLLS------GNYKKSIKKEACWTVSNITAG---NR---E------QIQAVIEANIIGPLVALLENA- 382 (530)
Q Consensus 322 ~~~~~~~l~~L~~lL~------~~~~~~v~~~a~~~L~nl~~~---~~---~------~~~~l~~~~~i~~L~~ll~~~- 382 (530)
++ ..+++.+...+. +. +...|+.|..+++.++.+ .. . ....++.. .++..+.+.
T Consensus 396 -v~-~~~l~~i~~~l~~~~~~~~~-~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~----~v~p~l~~~~ 468 (960)
T 1wa5_C 396 -VT-NIFLAHMKGFVDQYMSDPSK-NWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTK----EIAPDLTSNN 468 (960)
T ss_dssp -HH-HHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHH----HTHHHHHCSS
T ss_pred -HH-HHHHHHHHHHHHHhccCcch-hHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHH----HhHHHhcCCC
Confidence 11 123445555554 34 667888999999999753 11 0 22222221 233334555
Q ss_pred --chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHh
Q 009636 383 --EFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKV 443 (530)
Q Consensus 383 --~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~ 443 (530)
++.+|..|+|+++.++..-.++... .+++.++..|.++++.++..|+.+|.+++..
T Consensus 469 ~~~p~vr~~a~~~lg~~~~~~~~~~l~-----~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 469 IPHIILRVDAIKYIYTFRNQLTKAQLI-----ELMPILATFLQTDEYVVYTYAAITIEKILTI 526 (960)
T ss_dssp CSCHHHHHHHHHHHHHTGGGSCHHHHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred CCCceehHHHHHHHHHHHhhCCHHHHH-----HHHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence 8899999999999998865444333 3577888888888899999999999999874
No 86
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.32 E-value=0.00014 Score=80.36 Aligned_cols=336 Identities=10% Similarity=-0.025 Sum_probs=180.8
Q ss_pred HHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhc---------------CCCCHHHHHHHHHHHHHHhcCCh-hh
Q 009636 88 GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLL---------------REDYPQLQFEAAWALTNIASGTS-EH 151 (530)
Q Consensus 88 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~---------------~~~~~~i~~~a~~~L~~l~~~~~-~~ 151 (530)
.++..++.++..++.....+.. ....+++.+.. |. ..+.++++..|+.++..+..... ..
T Consensus 204 ~~~~~al~~l~~~~~~~~ip~~---~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~ 279 (971)
T 2x1g_F 204 SNMNRAVKCVGTWIKNIGYTIE---GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHN 279 (971)
T ss_dssp HHHHHHHHHHHHHHHHSCCCGG---GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGG
T ss_pred hHHHHHHHHHHHHHhhCCcCcc---ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccc
Confidence 6778888888876652001211 23445666666 41 11237899999999999997432 11
Q ss_pred HHHHHhCCChHHHHHh-------hCCCC---HHHHHHHHHHHHhhhCCCch-hh-----------hhHhhcCChHHHHHh
Q 009636 152 TKVVIDHGAVPIFVKL-------LYSPS---DDVREQAVWALGNIAGDSPR-CR-----------DLVLSQGGLVPLLAQ 209 (530)
Q Consensus 152 ~~~~~~~g~i~~L~~l-------l~~~~---~~i~~~a~~~L~nl~~~~~~-~~-----------~~i~~~~~i~~Ll~l 209 (530)
....+. .+++.++.+ +...+ .+.....+..+..++...+. +. ..+ ...++.++..
T Consensus 280 ~~~~~~-~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~ 356 (971)
T 2x1g_F 280 YPKTAF-VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILV--HRIVQEILHC 356 (971)
T ss_dssp CHHHHH-HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHH--HHHHHHHHHH
T ss_pred cHHHHH-HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHH--HHHHHHHHHH
Confidence 111111 123333322 23334 25555566666666532221 11 011 1234444444
Q ss_pred hcC----CCchhHHHHHHHHhhhhccCC--------CCCCh----hhhhchHHHHHHhhcCCCh---------------h
Q 009636 210 LNG----QPKLSMLRNATWTLSNFCRGK--------PQPPF----DQVSPALPALAHLIHSNDD---------------E 258 (530)
Q Consensus 210 l~~----~~~~~~~~~a~~~L~~L~~~~--------~~~~~----~~~~~~l~~L~~ll~~~d~---------------~ 258 (530)
... ..+..+...+++++..++... ..... .....+++.++..+..++. .
T Consensus 357 ~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~ 436 (971)
T 2x1g_F 357 TDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRC 436 (971)
T ss_dssp HHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHH
T ss_pred HcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHH
Confidence 322 347888999999998887521 11111 1223444544444432211 2
Q ss_pred HHHHHHHHHHHhccCCh-HHHHHHHHhCcHHHHHHhhCC-----CCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHH
Q 009636 259 VLTDACWALSYLSDGTN-DKIQAVIEAGVFPRLAEFLMH-----PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCL 332 (530)
Q Consensus 259 v~~~a~~~l~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~-----~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L 332 (530)
.+..+..++..++.... ..... +++.+...+.+ .+|..++.++.+++.++.+........+. .+++.+
T Consensus 437 ~R~~~~~~l~~~~~~~~~~~l~~-----~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~-~l~~~l 510 (971)
T 2x1g_F 437 YRQDISDTFMYCYDVLNDYILEI-----LAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIP-RLMRVL 510 (971)
T ss_dssp HHHHHHHHHHHHHTTCTTHHHHH-----HHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHH-HHHHHH
Confidence 34445555555554332 22221 22333333332 68889999999999999876543211111 133322
Q ss_pred HHhhc-CCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 009636 333 LNLLS-GNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVI 411 (530)
Q Consensus 333 ~~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~ 411 (530)
..+.. +. ++.+|..++|+++.++..-......+ ..+++.|+..++ +.|+..|++++.+++.........++
T Consensus 511 ~~l~~~d~-~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl~~l~~~l~---~~v~~~A~~al~~l~~~~~~~l~p~~-- 582 (971)
T 2x1g_F 511 AEIPYEKL-NVKLLGTALETMGSYCNWLMENPAYI--PPAINLLVRGLN---SSMSAQATLGLKELCRDCQLQLKPYA-- 582 (971)
T ss_dssp HHSCTTTS-CHHHHHHHHHHHHHTHHHHC----CH--HHHHHHHHHHHH---SSCHHHHHHHHHHHHHHCHHHHHHHH--
T ss_pred HhcCcccc-CHHHHHHHHHHHHHHHHHHhcCHHHH--HHHHHHHHHHhC---hHHHHHHHHHHHHHHHHHHHhccccH--
Confidence 22221 23 78999999999999986211111111 135666777673 78999999999999976543332222
Q ss_pred cCChHHHHhccCC--CChHHHHHHHHHHHHHHHhh
Q 009636 412 QGCIKPLCDLLVC--PDPRIVTVCLEGLENILKVG 444 (530)
Q Consensus 412 ~~~i~~L~~lL~~--~~~~~~~~al~~l~~ll~~~ 444 (530)
..++..|..++.. -+.+.+..+++++..++...
T Consensus 583 ~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~ 617 (971)
T 2x1g_F 583 DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLL 617 (971)
T ss_dssp HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhC
Confidence 2456677777766 35678888999999988643
No 87
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.19 E-value=0.00014 Score=80.30 Aligned_cols=340 Identities=14% Similarity=0.100 Sum_probs=189.4
Q ss_pred cCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhh---CCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCC
Q 009636 126 LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL---YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGG 202 (530)
Q Consensus 126 ~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll---~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~ 202 (530)
.+.+ ...+..++++++.++.+..+.. ...++.++..+ ..+++.++..++|+++.++..-....+. + ..+
T Consensus 459 ~~~~-w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~-l-~~v 530 (963)
T 2x19_B 459 EPYS-WQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVM-I-NSV 530 (963)
T ss_dssp CSCC-HHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHH-H-TTT
T ss_pred CCCc-hHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHH-H-HHH
Confidence 3444 7888999999999998643311 12334444433 3357889999999999987432111111 2 247
Q ss_pred hHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCC--ChhHHHHHHHHHHHhccCCh-HHHH
Q 009636 203 LVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSN--DDEVLTDACWALSYLSDGTN-DKIQ 279 (530)
Q Consensus 203 i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~--d~~v~~~a~~~l~~l~~~~~-~~~~ 279 (530)
++.++..+ .+ +.++..|++++.++|...+..-......++..+..++... +...+..++.+++.++...+ +...
T Consensus 531 l~~l~~~l-~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~ 607 (963)
T 2x19_B 531 LPLVLHAL-GN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL 607 (963)
T ss_dssp HHHHHHHT-TC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHh-CC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence 78888877 33 7899999999999997643222233456666677777653 56788888889988875442 3333
Q ss_pred HHHHhCcHHHHHHhh----CCC-CchhHH---HHHHHHhHhhcCCch---------------------hhHHHhhcCchH
Q 009636 280 AVIEAGVFPRLAEFL----MHP-SPSVLI---PALRTVGNIVTGDDM---------------------QTQCVIEYQALP 330 (530)
Q Consensus 280 ~~~~~~~l~~L~~lL----~~~-~~~~~~---~al~~L~nl~~~~~~---------------------~~~~~~~~~~l~ 330 (530)
..++ .+++.+...+ ... ++..+. ..+.+|+.++..-.. ..-..+...+++
T Consensus 608 ~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (963)
T 2x19_B 608 KNLH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQ 686 (963)
T ss_dssp HHHH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHH
Confidence 3332 3444444433 222 333333 445555555432110 001112334566
Q ss_pred HHHHhhcCC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHH----hcC-chhHHHHHHHHHHHhhc--CCC
Q 009636 331 CLLNLLSGN-YKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALL----ENA-EFDIKKEAAWAISNATS--GGT 402 (530)
Q Consensus 331 ~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll----~~~-~~~v~~~a~~aL~nl~~--~~~ 402 (530)
.+..++... .+..+.+.+|.++..++....+.. ..+++.++..+ ... .+ ..++.+..++. +..
T Consensus 687 ~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~-----~~~l~~~~~~l~~~~~~~~~~----~~l~l~~~li~~f~~~ 757 (963)
T 2x19_B 687 LIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDF-----APMVPQLCEMLGRMYSTIPQA----SALDLTRQLVHIFAHE 757 (963)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTT-----GGGHHHHHHHHHHHHHHSCCH----HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccCchHHHHHHHHHHHHHHHhhcccc-----cccHHHHHHHHHHHHHcCCcc----HHHHHHHHHHHHhCCC
Confidence 666666431 156889999999988764211111 12344444332 221 12 23444444433 222
Q ss_pred H---HHHHHHHHcCChHHHHhccC---CCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhc
Q 009636 403 H---EQIKFLVIQGCIKPLCDLLV---CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQT 476 (530)
Q Consensus 403 ~---~~~~~l~~~~~i~~L~~lL~---~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~ 476 (530)
. ..+..+.+ .++..+..++. ..+++++......+..++...+..-.. ...... ..++.+.....
T Consensus 758 ~~~~~~~~~~l~-~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~----~~~~~~-----~i~~~~~~~l~ 827 (963)
T 2x19_B 758 PAHFPPIEALFL-LVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLC----ERLDVK-----AVFQCAVLALK 827 (963)
T ss_dssp TTTCHHHHHHHH-HHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGC----TTSCHH-----HHHHHHHHHTT
T ss_pred cchHHHHHHHHH-HHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcC----CcccHH-----HHHHHHHHHcC
Confidence 1 12222111 12333333332 246899999999999999876643210 000011 12344444557
Q ss_pred CCCHHHHHHHHHHHHHhCCC
Q 009636 477 HDNAEIYEKSVKLLETYWLD 496 (530)
Q Consensus 477 ~~~~~v~~~a~~il~~~~~~ 496 (530)
+++.++...+..++.+++..
T Consensus 828 ~~~~~~~~~~l~~l~~l~~~ 847 (963)
T 2x19_B 828 FPEAPTVKASCGFFTELLPR 847 (963)
T ss_dssp CSCHHHHHHHHHHHHHHGGG
T ss_pred CCCHHHHHHHHHHHHHHHhc
Confidence 89999999999999987753
No 88
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=98.18 E-value=0.00087 Score=74.54 Aligned_cols=342 Identities=11% Similarity=0.084 Sum_probs=181.9
Q ss_pred CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHH-hhcCCCCHHHHHHHHHHHHHHhcCC--hh---hHHHHHh-
Q 009636 85 NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVE-FLLREDYPQLQFEAAWALTNIASGT--SE---HTKVVID- 157 (530)
Q Consensus 85 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~-ll~~~~~~~i~~~a~~~L~~l~~~~--~~---~~~~~~~- 157 (530)
.++.++..++.++..+++.- +...+.+..+++.+.+ ++. + +.++..|+.||..+.... +. ....+..
T Consensus 207 ~~~~~~~~aL~~l~~~l~wi---~~~~~~~~~ll~~l~~~~l~--~-~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l 280 (1049)
T 3m1i_C 207 SSSSLIVATLESLLRYLHWI---PYRYIYETNILELLSTKFMT--S-PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLF 280 (1049)
T ss_dssp CCHHHHHHHHHHHHHHTTTS---CTHHHHSSSHHHHHHTHHHH--S-HHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhC---CHHHHhhhhHHHHHHHHhCC--C-HhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHH
Confidence 45678888899988877542 2344556677777773 443 4 899999999999998742 21 1111110
Q ss_pred -CCChHHHHH-hh-------------CCCCHHHHHHHHHHHHhhhC-------CCchhhhhHhhcCChHHHHHhhcCCCc
Q 009636 158 -HGAVPIFVK-LL-------------YSPSDDVREQAVWALGNIAG-------DSPRCRDLVLSQGGLVPLLAQLNGQPK 215 (530)
Q Consensus 158 -~g~i~~L~~-ll-------------~~~~~~i~~~a~~~L~nl~~-------~~~~~~~~i~~~~~i~~Ll~ll~~~~~ 215 (530)
.+++..+.. ++ ...+.+.....+..+..+.. ..+..+..+ ..+++.++... ...+
T Consensus 281 ~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~-~~~d 357 (1049)
T 3m1i_C 281 FQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL--LNAHQYLIQLS-KIEE 357 (1049)
T ss_dssp HHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH--HHHHHHHHHHH-TSSC
T ss_pred HHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH--HHHHHHHHHHH-cCCc
Confidence 122222221 11 11233444444444433321 111122221 12455555555 4557
Q ss_pred hhHHHHHHHHhhhhcc----CCCCCC--hhhhhchHHHHHHhhcCC-------------------Ch---hHHHHHHHHH
Q 009636 216 LSMLRNATWTLSNFCR----GKPQPP--FDQVSPALPALAHLIHSN-------------------DD---EVLTDACWAL 267 (530)
Q Consensus 216 ~~~~~~a~~~L~~L~~----~~~~~~--~~~~~~~l~~L~~ll~~~-------------------d~---~v~~~a~~~l 267 (530)
.++...++..+..++. ...... ......+++.++..+.-+ |. .....+..+|
T Consensus 358 ~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L 437 (1049)
T 3m1i_C 358 RELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVL 437 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHH
Confidence 7888888888888877 321111 123344555555544321 00 1122233444
Q ss_pred HHhccCChHHHHHHHHhCcHHHHHHhhC--CCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcC-----CC
Q 009636 268 SYLSDGTNDKIQAVIEAGVFPRLAEFLM--HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG-----NY 340 (530)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~--~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~-----~~ 340 (530)
..++....... + .-+.+.+-..+. ..+|..+..++++++.++.+.........-..+++.+..+... +
T Consensus 438 ~~l~~~~~~~~---l-~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~- 512 (1049)
T 3m1i_C 438 VYLTHLNVIDT---E-EIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDN- 512 (1049)
T ss_dssp HHHHHHCHHHH---H-HHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHH-
T ss_pred HHHHccCHHHH---H-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccc-
Confidence 44442222111 1 112344444454 3578899999999999986544332212122345555554332 2
Q ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHH--------HHHHHc
Q 009636 341 KKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQI--------KFLVIQ 412 (530)
Q Consensus 341 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~--------~~l~~~ 412 (530)
++.++..++|+++.++..-..+-..+ ..+++.++..+.+.++.|+..|+++|.+++..+..... .++ .
T Consensus 513 ~~~v~~~~~~~lgry~~~~~~~~~~l--~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~--~ 588 (1049)
T 3m1i_C 513 KAVVASDIMYVVGQYPRFLKAHWNFL--RTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFI--Q 588 (1049)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHCHHHH--HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHH--H
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHH--H
Confidence 45566679999998875211111122 23677788888888899999999999999985432211 111 1
Q ss_pred CChHHHHhccCCCChHHHHHHHHHHHHHHHhh
Q 009636 413 GCIKPLCDLLVCPDPRIVTVCLEGLENILKVG 444 (530)
Q Consensus 413 ~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~ 444 (530)
.++..+..++..-+.+-.....+++..++...
T Consensus 589 ~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~ 620 (1049)
T 3m1i_C 589 TIIRDIQKTTADLQPQQVHTFYKACGIIISEE 620 (1049)
T ss_dssp HHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcC
Confidence 23333444444445554556677777776543
No 89
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.15 E-value=0.00012 Score=80.74 Aligned_cols=258 Identities=10% Similarity=0.088 Sum_probs=152.5
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhC------CCCHHHHHHHHHHHHhhhCCCchhhhhHh---h-cC
Q 009636 132 QLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY------SPSDDVREQAVWALGNIAGDSPRCRDLVL---S-QG 201 (530)
Q Consensus 132 ~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~------~~~~~i~~~a~~~L~nl~~~~~~~~~~i~---~-~~ 201 (530)
..+..|..+|..++...++ .++. .+++.+.+.+. +.+...++.|+.+++.++.....+..... . ..
T Consensus 376 s~R~aa~~~L~~l~~~~~~---~v~~-~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~ 451 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNEV---LVTN-IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLN 451 (960)
T ss_dssp CHHHHHHHHHHHHHHHCHH---HHHH-HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC
T ss_pred CcHHHHHHHHHHHHHHcch---hHHH-HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCccccccccc
Confidence 4677788888888874332 1211 12344444454 46678999999999999853211110000 0 01
Q ss_pred ChHH----HHHhhcCC--CchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC-
Q 009636 202 GLVP----LLAQLNGQ--PKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT- 274 (530)
Q Consensus 202 ~i~~----Ll~ll~~~--~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~- 274 (530)
..+. ++..+.+. .++-++..++|+++.++..- .......+++.++..+.+++..|+..|++++.+++...
T Consensus 452 l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~---~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~ 528 (960)
T 1wa5_C 452 VVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL---TKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRE 528 (960)
T ss_dssp HHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS---CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC---CHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhccc
Confidence 1121 22333222 27889999999999999863 23457788899999998888999999999999988641
Q ss_pred ----------hHHHHHHHHhCcHHHHHHhhCCCC-----chhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhh---
Q 009636 275 ----------NDKIQAVIEAGVFPRLAEFLMHPS-----PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLL--- 336 (530)
Q Consensus 275 ----------~~~~~~~~~~~~l~~L~~lL~~~~-----~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL--- 336 (530)
.+.....+. .+++.|+.++.... ......++.+++.++....+...... ..+++.|...+
T Consensus 529 ~~~~~~~~~~~~~l~p~l~-~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~-~~l~~~L~~~l~~~ 606 (960)
T 1wa5_C 529 SNTSPAFIFHKEDISNSTE-ILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLF-PQLLAQFIEIVTIM 606 (960)
T ss_dssp CSSSCCBSSCGGGTTTTHH-HHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGH-HHHHHHHHHHHHHH
T ss_pred ccccccccccHHHhhhhHH-HHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHH
Confidence 111221222 46667777776641 11234566666665432211111111 12333443333
Q ss_pred -cCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009636 337 -SGNYKKSIKKEACWTVSNITAG-NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS 399 (530)
Q Consensus 337 -~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 399 (530)
+++.++.++..++.+|+.++.. .++....+ ...++|.+..++.....+....+...+..+..
T Consensus 607 ~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~-~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~ 670 (960)
T 1wa5_C 607 AKNPSNPRFTHYTFESIGAILNYTQRQNLPLL-VDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVE 670 (960)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHH-HHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHH
T ss_pred HhCCCCcHHHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHH
Confidence 3343667777788888888875 44433333 34678888888887666777777777777664
No 90
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.15 E-value=7.3e-05 Score=68.97 Aligned_cols=186 Identities=15% Similarity=0.093 Sum_probs=138.5
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhh
Q 009636 246 PALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIE 325 (530)
Q Consensus 246 ~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~ 325 (530)
..++.-|.+.+...+..++..|..+...+.+....++..+++..|+......+...+..++++++++..+.+.....+-.
T Consensus 121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~ 200 (339)
T 3dad_A 121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAH 200 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHC
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCC
Confidence 34556666788888899999999866566778888999999999999999999999999999999999754433222335
Q ss_pred cCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH--------h--CcHHHHHHHHh---cCchhHHHHHHH
Q 009636 326 YQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIE--------A--NIIGPLVALLE---NAEFDIKKEAAW 392 (530)
Q Consensus 326 ~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~--------~--~~i~~L~~ll~---~~~~~v~~~a~~ 392 (530)
..++..+..++.+. ...|.+.|..+|..++..++.....+.+ . ..+..|+.+|. +.|.+++..|..
T Consensus 201 ~~fI~~lyslv~s~-~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amt 279 (339)
T 3dad_A 201 SDTIQWLYTLCASL-SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVT 279 (339)
T ss_dssp HHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHH
Confidence 67899999999976 8999999999999998765433333322 1 23778999997 678999999988
Q ss_pred HHHHhhcCCC-HH----HHHHHHHcCChHHHHhccCCC--ChHHHHH
Q 009636 393 AISNATSGGT-HE----QIKFLVIQGCIKPLCDLLVCP--DPRIVTV 432 (530)
Q Consensus 393 aL~nl~~~~~-~~----~~~~l~~~~~i~~L~~lL~~~--~~~~~~~ 432 (530)
.|..+..+.+ .+ ....+-+.|+-..+...++.. +++++..
T Consensus 280 LIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 280 LINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 8877776544 23 333444556556677767654 6565553
No 91
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.15 E-value=0.00024 Score=76.24 Aligned_cols=296 Identities=16% Similarity=0.159 Sum_probs=196.3
Q ss_pred HHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCC--CCChhhh
Q 009636 164 FVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP--QPPFDQV 241 (530)
Q Consensus 164 L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~--~~~~~~~ 241 (530)
+.+.+...+..-+..++..+.++.......+ ....+++..+.+.+ .+.... +.|+.++..||.... .......
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~ 93 (986)
T 2iw3_A 19 LFQKLSVATADNRHEIASEVASFLNGNIIEH--DVPEHFFGELAKGI-KDKKTA--ANAMQAVAHIANQSNLSPSVEPYI 93 (986)
T ss_dssp HHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHH-TSHHHH--HHHHHHHHHHTCTTTCCTTTHHHH
T ss_pred HHhhccccchhHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHH-hccCCH--HHHHHHHHHHHHhcCCCCCcccch
Confidence 4444444333334556666777654332221 12235677777777 443333 999999999997652 2334455
Q ss_pred hchHHHHHHhhcCCChhHHHHHHHHHHHhccC-ChHHHHHHHHhCcHHHHHHhhCCC-CchhHHHHHHHHhHhhcCCchh
Q 009636 242 SPALPALAHLIHSNDDEVLTDACWALSYLSDG-TNDKIQAVIEAGVFPRLAEFLMHP-SPSVLIPALRTVGNIVTGDDMQ 319 (530)
Q Consensus 242 ~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~l~~L~~lL~~~-~~~~~~~al~~L~nl~~~~~~~ 319 (530)
-+++|.++..+.+.+..|+..+-.++..+... ++... ..+++.|+..|.+. .|..+..|+.++..++...+.+
T Consensus 94 ~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~ 168 (986)
T 2iw3_A 94 VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQ 168 (986)
T ss_dssp HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHH
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHH
Confidence 57788888888888888888877777666533 22222 25678888888655 7999999999999999765544
Q ss_pred hHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc--CCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHh
Q 009636 320 TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA--GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNA 397 (530)
Q Consensus 320 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 397 (530)
...- -..++|.+...+.+. .++|++.|..++..+|. ++.+. ...+|.|++.+..++ + .-++...|+.-
T Consensus 169 ~~~~-~~~~~p~~~~~~~d~-k~~v~~~~~~~~~~~~~~~~n~d~------~~~~~~~~~~~~~p~-~-~~~~~~~l~~~ 238 (986)
T 2iw3_A 169 VALR-MPELIPVLSETMWDT-KKEVKAAATAAMTKATETVDNKDI------ERFIPSLIQCIADPT-E-VPETVHLLGAT 238 (986)
T ss_dssp HHHH-HHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHGGGCCCTTT------GGGHHHHHHHHHCTT-H-HHHHHHHHTTC
T ss_pred HHHh-ccchhcchHhhcccC-cHHHHHHHHHHHHHHHhcCCCcch------hhhHHHHHHHhcChh-h-hHHHHHHhhcC
Confidence 3222 246889999999988 99999999999999987 44332 357999999998774 2 33445555444
Q ss_pred hcCC--CHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHH-
Q 009636 398 TSGG--THEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESL- 474 (530)
Q Consensus 398 ~~~~--~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l- 474 (530)
+.-. +...... +++.|.+-|......+...+.-.+.|+++.-+.-. ...+|...+ +..++..
T Consensus 239 tfv~~v~~~~l~~-----~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~-----~~~~f~~~l-----~p~~~~~~ 303 (986)
T 2iw3_A 239 TFVAEVTPATLSI-----MVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQ-----VIAPFLGKL-----LPGLKSNF 303 (986)
T ss_dssp CCCSCCCHHHHHH-----HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHH-----HHHHHHTTT-----HHHHHHHT
T ss_pred eeEeeecchhHHH-----HHHHHHhhhccCcchhheeeEEEEcchhhhcCCHH-----HHhhhhhhh-----hhHHHHHh
Confidence 3322 1111111 36677778888888888999999999998765422 123344333 4566553
Q ss_pred hcCCCHHHHHHHHHHHHHhC
Q 009636 475 QTHDNAEIYEKSVKLLETYW 494 (530)
Q Consensus 475 ~~~~~~~v~~~a~~il~~~~ 494 (530)
....+|++++.|...++...
T Consensus 304 ~~~~~pe~r~~~~~a~~~l~ 323 (986)
T 2iw3_A 304 ATIADPEAREVTLRALKTLR 323 (986)
T ss_dssp TTCCSHHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHH
Confidence 56789998888877777664
No 92
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.12 E-value=9.6e-05 Score=68.19 Aligned_cols=189 Identities=12% Similarity=0.123 Sum_probs=142.2
Q ss_pred HHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH-
Q 009636 289 RLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVI- 367 (530)
Q Consensus 289 ~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~- 367 (530)
.++..|.+.+...+..++.-|..+...+......++..+++..|+.+.... +...+..+..++.++..+ .....-++
T Consensus 122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~-~gN~q~Y~L~AL~~LM~~-v~Gm~gvvs 199 (339)
T 3dad_A 122 AILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA-DHNYQSYILRALGQLMLF-VDGMLGVVA 199 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS-CHHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc-ChHHHHHHHHHHHHHHhc-cccccchhC
Confidence 344555567778899999999997766788889999999999999999998 999999999999999875 34444444
Q ss_pred HhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHH--------HcC--ChHHHHhccC---CCChHHHHHHH
Q 009636 368 EANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLV--------IQG--CIKPLCDLLV---CPDPRIVTVCL 434 (530)
Q Consensus 368 ~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~--------~~~--~i~~L~~lL~---~~~~~~~~~al 434 (530)
...+|..+..++.+.+..|.+.|+..|..++.... .....+. ..| .+..|+.+|. +.|.+++..++
T Consensus 200 ~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se-~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am 278 (339)
T 3dad_A 200 HSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSE-NNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV 278 (339)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCc-ccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence 45688889999988889999999999999987542 1111111 112 3778889997 78999999999
Q ss_pred HHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCC--CHHHHHH
Q 009636 435 EGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHD--NAEIYEK 485 (530)
Q Consensus 435 ~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~--~~~v~~~ 485 (530)
..|..++...+.... -..+...+++.|.-..+...+... ++++.++
T Consensus 279 tLIN~lL~~apd~d~-----~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 279 TLINKTLAALPDQDS-----FYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHHHHHCSSHHH-----HHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHHHHhcCCChhH-----HHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 999999887653221 223677788888777788866654 6666543
No 93
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.10 E-value=0.00013 Score=80.58 Aligned_cols=300 Identities=13% Similarity=0.127 Sum_probs=158.9
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhh---C--CCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHH
Q 009636 131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL---Y--SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVP 205 (530)
Q Consensus 131 ~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll---~--~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~ 205 (530)
...++.|+++++.++.+...... ..++.++.++ . +.++.++..++|+++.++..-....+.+. .+++.
T Consensus 478 w~~~eaal~~l~~iae~~~~~~~-----~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~--~vl~~ 550 (971)
T 2x1g_F 478 WTKLEACIYSFQSVAEHFGGEEK-----RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIP--PAINL 550 (971)
T ss_dssp CHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHH--HHHHH
T ss_pred HHHHHHHHHHHHHHHhhcChhhh-----HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHH--HHHHH
Confidence 57789999999999886543221 2233333332 3 24789999999999998842111111111 24555
Q ss_pred HHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCC--ChhHHHHHHHHHHHhccCC-hHHHHHHH
Q 009636 206 LLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSN--DDEVLTDACWALSYLSDGT-NDKIQAVI 282 (530)
Q Consensus 206 Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~--d~~v~~~a~~~l~~l~~~~-~~~~~~~~ 282 (530)
++..+ + +.++..|++++.++|+.....-......++..+..++... +...+..++.+++.++... .+.....+
T Consensus 551 l~~~l-~---~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~ 626 (971)
T 2x1g_F 551 LVRGL-N---SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYL 626 (971)
T ss_dssp HHHHH-H---SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHH
T ss_pred HHHHh-C---hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 66656 2 6789999999999997642221233455666666777763 5778888888888887542 12222222
Q ss_pred H---hCcHHHHHHhhCCC--CchhHHH---HHHHHhHhhcCCch------------hhHHHhhcCchHHHHHhhcCC-Cc
Q 009636 283 E---AGVFPRLAEFLMHP--SPSVLIP---ALRTVGNIVTGDDM------------QTQCVIEYQALPCLLNLLSGN-YK 341 (530)
Q Consensus 283 ~---~~~l~~L~~lL~~~--~~~~~~~---al~~L~nl~~~~~~------------~~~~~~~~~~l~~L~~lL~~~-~~ 341 (530)
. .-++..+..++... +...+.. ++..|+.+...-.. ..-..+-..+++.+..++... .+
T Consensus 627 ~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~ 706 (971)
T 2x1g_F 627 DIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEE 706 (971)
T ss_dssp HHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhcccc
Confidence 2 12333333444433 2222333 34444444321100 000122346788888887542 26
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCC-C-HH---HHHHHHHcCChH
Q 009636 342 KSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG-T-HE---QIKFLVIQGCIK 416 (530)
Q Consensus 342 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~-~-~~---~~~~l~~~~~i~ 416 (530)
..+.+.++++++.++..-......++. .+++.|+..+..... ..+++.++.++..- . +. ....+.. .++.
T Consensus 707 ~~v~e~~~~~~~~~~~~~~~~~~p~l~-~~~~~l~~~~~~~~~---~~~l~l~~~~i~~~~~~~~~~~~l~~~~~-~~~~ 781 (971)
T 2x1g_F 707 IDVLEAACSAMKHAITNLRSSFQPMLQ-DLCLFIVASFQTRCC---APTLEISKTAIVMFFKDEGCKPLMQQLLR-EFIQ 781 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--CTHHH-HHHHHHHHHCC--CC---HHHHHHHHHHHTTCCC-----HHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhccccHH-HHHHHHHHHHhcCCc---hHHHHHHHHHHHHhCCCcchHHHHHHHHH-HHHH
Confidence 689999999999987521111111111 133334333333221 23677777776522 2 11 1222222 1233
Q ss_pred HHHhccCC-------CChHHHHHHHHHHHHHHHhhhh
Q 009636 417 PLCDLLVC-------PDPRIVTVCLEGLENILKVGEA 446 (530)
Q Consensus 417 ~L~~lL~~-------~~~~~~~~al~~l~~ll~~~~~ 446 (530)
.+..++.. .+++++......+..++...+.
T Consensus 782 ~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~ 818 (971)
T 2x1g_F 782 HSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQ 818 (971)
T ss_dssp HHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGG
T ss_pred HHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcH
Confidence 33344433 3778888888888888877664
No 94
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=98.02 E-value=3.1e-05 Score=84.73 Aligned_cols=304 Identities=11% Similarity=0.024 Sum_probs=167.4
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC--hhhHHHHHhCCCh
Q 009636 84 SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT--SEHTKVVIDHGAV 161 (530)
Q Consensus 84 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~--~~~~~~~~~~g~i 161 (530)
+.++.+...++.++..+++- -+...++..++++.+..+|.. +.++..|+.||..+.... ++.+..++..=.+
T Consensus 204 ~~~~~l~~~~L~~l~s~i~w---i~~~~i~~~~ll~~l~~~L~~---~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L 277 (980)
T 3ibv_A 204 AKNYGTVGLCLQVYAQWVSW---ININLIVNEPCMNLLYSFLQI---EELRCAACETMTEIVNKKMKPLEKLNLLNILNL 277 (980)
T ss_dssp TTCHHHHHHHHHHHHHHTTT---SCHHHHHCHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhh---cCHHhhhcchHHHHHHHHcCC---hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhH
Confidence 46788889999999999864 346667777889999998864 789999999999998754 3333333322011
Q ss_pred HHHHHhhC--CCCHHHHHHHHHHHHhhhC------CCc-----hhhhh--HhhcCChHHHHHhhcCCCchhHHHHHHHHh
Q 009636 162 PIFVKLLY--SPSDDVREQAVWALGNIAG------DSP-----RCRDL--VLSQGGLVPLLAQLNGQPKLSMLRNATWTL 226 (530)
Q Consensus 162 ~~L~~ll~--~~~~~i~~~a~~~L~nl~~------~~~-----~~~~~--i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L 226 (530)
...+..+. ..+.++.+..+..+..++. ..+ +.+.. -.-.+.++.++... .+++.++...++.++
T Consensus 278 ~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~-~~~~deVs~~t~~Fw 356 (980)
T 3ibv_A 278 NLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYL-SDDYDETSTAVFPFL 356 (980)
T ss_dssp HHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHH-TCSSHHHHHTTHHHH
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHh-CCCchhHHHHHHHHH
Confidence 11122222 3566665544444433321 111 00000 01124677777877 556667777776666
Q ss_pred hhhccCC---CC--CCh----hhhhchHHHHHHhhcCC-----Ch-----------hHHHHHHHHHHHhccCChHHHHH-
Q 009636 227 SNFCRGK---PQ--PPF----DQVSPALPALAHLIHSN-----DD-----------EVLTDACWALSYLSDGTNDKIQA- 280 (530)
Q Consensus 227 ~~L~~~~---~~--~~~----~~~~~~l~~L~~ll~~~-----d~-----------~v~~~a~~~l~~l~~~~~~~~~~- 280 (530)
..+.... +. ... .....+++.++.-+.-+ +. +.|......+..++.-.++..-.
T Consensus 357 ~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~ 436 (980)
T 3ibv_A 357 SDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSY 436 (980)
T ss_dssp HHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 6655321 11 111 12233444444434321 01 23333331111221112111111
Q ss_pred HHHhCcHHHHHHhhC---CCCchhHHHHHHHHhHhhcCCchhhHHH-----hhcCchHHHHHhhc-----CCCchhHHHH
Q 009636 281 VIEAGVFPRLAEFLM---HPSPSVLIPALRTVGNIVTGDDMQTQCV-----IEYQALPCLLNLLS-----GNYKKSIKKE 347 (530)
Q Consensus 281 ~~~~~~l~~L~~lL~---~~~~~~~~~al~~L~nl~~~~~~~~~~~-----~~~~~l~~L~~lL~-----~~~~~~v~~~ 347 (530)
+.+ -+.+.+...+. +.+|..++.++.+++.++.+.......+ .-..+++.+..++. .+ ++.|+..
T Consensus 437 ~~~-~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~-hp~V~~~ 514 (980)
T 3ibv_A 437 MYS-AITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHP-HPLVQLL 514 (980)
T ss_dssp HHH-HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCC-CHHHHHH
T ss_pred HHH-HHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCC-CHHHHHH
Confidence 110 11122223342 3468899999999999998755322111 01124455666654 45 7899999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhc------CchhHHHHHHHHHHHhhcCCC
Q 009636 348 ACWTVSNITAGNREQIQAVIEANIIGPLVALLEN------AEFDIKKEAAWAISNATSGGT 402 (530)
Q Consensus 348 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~------~~~~v~~~a~~aL~nl~~~~~ 402 (530)
++|+++..+..-.. +...++.++..+-+ ++.+|+..|+.++.+++..+.
T Consensus 515 ~~~~l~rys~~~~~------~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~ 569 (980)
T 3ibv_A 515 YMEILVRYASFFDY------ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIK 569 (980)
T ss_dssp HHHHHHHTGGGGGT------CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc------CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhh
Confidence 99999999873211 12355555555544 467899999999999988553
No 95
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.82 E-value=0.022 Score=63.30 Aligned_cols=315 Identities=10% Similarity=0.124 Sum_probs=170.0
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHhhhCCC--ch-
Q 009636 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK-LLYSPSDDVREQAVWALGNIAGDS--PR- 192 (530)
Q Consensus 117 ~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-ll~~~~~~i~~~a~~~L~nl~~~~--~~- 192 (530)
+++.+..++....++.++..++.++.+....-+ ...+....+++.+.. ++ .++.++..|+.+|..+.... +.
T Consensus 195 i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~--~~~~~~~~ll~~l~~~~l--~~~~~~~~a~~~L~~i~~~~~~~~~ 270 (1049)
T 3m1i_C 195 IFKLCFQVLEQGSSSSLIVATLESLLRYLHWIP--YRYIYETNILELLSTKFM--TSPDTRAITLKCLTEVSNLKIPQDN 270 (1049)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC--THHHHSSSHHHHHHTHHH--HSHHHHHHHHHHHHHHHHCCCCTTC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCC--HHHHhhhhHHHHHHHHhC--CCHhHHHHHHHHHHHHHhCCCCcch
Confidence 344455566544447899999999998776333 223555667777663 44 37889999999999998552 21
Q ss_pred --hhhhHhh--cCChHHHHH-h----------h--cCCCchhHHHHHHHHhhhhccCC------CCCChhhhhchHHHHH
Q 009636 193 --CRDLVLS--QGGLVPLLA-Q----------L--NGQPKLSMLRNATWTLSNFCRGK------PQPPFDQVSPALPALA 249 (530)
Q Consensus 193 --~~~~i~~--~~~i~~Ll~-l----------l--~~~~~~~~~~~a~~~L~~L~~~~------~~~~~~~~~~~l~~L~ 249 (530)
....+.. .+.+..+.. + + ..+.+.+.....+..+..+.... +.........+++.++
T Consensus 271 ~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll 350 (1049)
T 3m1i_C 271 DLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLI 350 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHH
Confidence 1111111 111221111 1 1 02234555555555554433210 1111222345677777
Q ss_pred HhhcCCChhHHHHHHHHHHHhcc----C--ChHHHHHHHHhCcHHHHHHhhCCCCc----------------------hh
Q 009636 250 HLIHSNDDEVLTDACWALSYLSD----G--TNDKIQAVIEAGVFPRLAEFLMHPSP----------------------SV 301 (530)
Q Consensus 250 ~ll~~~d~~v~~~a~~~l~~l~~----~--~~~~~~~~~~~~~l~~L~~lL~~~~~----------------------~~ 301 (530)
.+...++.++...++..+..+++ . .......++. .+++.++..+..++. ..
T Consensus 351 ~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~-~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~ 429 (1049)
T 3m1i_C 351 QLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICS-QLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQL 429 (1049)
T ss_dssp HHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHH-HHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHH
T ss_pred HHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH-HHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHH
Confidence 77777788887777766666554 1 1111121222 344555555432210 11
Q ss_pred HHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcC-CCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHh
Q 009636 302 LIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG-NYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLE 380 (530)
Q Consensus 302 ~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~ 380 (530)
+..+..+|..++....... -.-+.+.+...+.. ..+...+..++|+++.++.+.......-.-..+++.|..+..
T Consensus 430 ~~~~~~~L~~l~~~~~~~~----l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~ 505 (1049)
T 3m1i_C 430 YKSEREVLVYLTHLNVIDT----EEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTV 505 (1049)
T ss_dssp HHHHHHHHHHHHHHCHHHH----HHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHccCHHHH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHh
Confidence 2234445555542222111 11223444445543 226678999999999998743222111111124555555432
Q ss_pred -----cCchhHHHHHHHHHHHhhcC--CCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhh
Q 009636 381 -----NAEFDIKKEAAWAISNATSG--GTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGE 445 (530)
Q Consensus 381 -----~~~~~v~~~a~~aL~nl~~~--~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~ 445 (530)
.+.+.++..++|+++.++.. ..+++.. .+++.|+..+.++++.++..|+.++.+++....
T Consensus 506 ~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~-----~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~ 572 (1049)
T 3m1i_C 506 KKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-----TVILKLFEFMHETHEGVQDMACDTFIKIVQKCK 572 (1049)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-----HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred hhccccchHHHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 13455666789999977642 1233322 356778888888889999999999999998654
No 96
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.78 E-value=0.0017 Score=71.69 Aligned_cols=333 Identities=13% Similarity=0.078 Sum_probs=184.6
Q ss_pred cCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhh---cCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCC
Q 009636 83 WSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFL---LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHG 159 (530)
Q Consensus 83 ~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll---~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g 159 (530)
.+.++..+..++.++..++.+-.. .. ...++.++..+ .+++ +.++..++|+++.++..-.... ... ..
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~-~~-----~~~l~~l~~~l~~l~~~~-~~vr~~~~~~l~~~~~~l~~~~-~~l-~~ 529 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDV-NY-----SDVVPGLIGLIPRISISN-VQLADTVMFTIGALSEWLADHP-VMI-NS 529 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCS-SC-----CSHHHHHHHHGGGSCCCS-HHHHHHHHHHHHHTHHHHHHCH-HHH-TT
T ss_pred CCCchHHHHHHHHHHHHHHhhcCc-hh-----hHHHHHHHHHHHhCCCCc-HHHHHHHHHHHHHHHHHHHhCH-HHH-HH
Confidence 456778888889999988755321 11 12233344333 2234 8899999999999886322222 222 47
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhh--cCChHHHHHhhcC-CCchhHHHHHHHHhhhhccCCC-C
Q 009636 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLS--QGGLVPLLAQLNG-QPKLSMLRNATWTLSNFCRGKP-Q 235 (530)
Q Consensus 160 ~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~--~~~i~~Ll~ll~~-~~~~~~~~~a~~~L~~L~~~~~-~ 235 (530)
+++.++..+.+ +.++..|+++|.+++.+. +..+.. ..++..+..++.. ..+...+..+..++..++...+ .
T Consensus 530 vl~~l~~~l~~--~~V~~~A~~al~~l~~~~---~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~ 604 (963)
T 2x19_B 530 VLPLVLHALGN--PELSVSSVSTLKKICREC---KYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVE 604 (963)
T ss_dssp THHHHHHHTTC--GGGHHHHHHHHHHHHHHT---GGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHhCC--chHHHHHHHHHHHHHHHH---HHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHH
Confidence 88999998854 789999999999999543 222221 1133334444433 2356778888888888876543 1
Q ss_pred CChhhhhchHHHHHHhhc----CC-ChhHHH---HHHHHHHHhccC----Ch------------------HHHHHHHHhC
Q 009636 236 PPFDQVSPALPALAHLIH----SN-DDEVLT---DACWALSYLSDG----TN------------------DKIQAVIEAG 285 (530)
Q Consensus 236 ~~~~~~~~~l~~L~~ll~----~~-d~~v~~---~a~~~l~~l~~~----~~------------------~~~~~~~~~~ 285 (530)
........+++.+...+. .. +++... ..+.+++.+... .. .....+ ...
T Consensus 605 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 683 (963)
T 2x19_B 605 EILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVV-LQQ 683 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHH-HHH
Confidence 122233445544444332 22 443333 334444333211 00 111112 224
Q ss_pred cHHHHHHhhCC--CCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhh----cCCCchhHHHHHHHHHHHHhc--
Q 009636 286 VFPRLAEFLMH--PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLL----SGNYKKSIKKEACWTVSNITA-- 357 (530)
Q Consensus 286 ~l~~L~~lL~~--~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL----~~~~~~~v~~~a~~~L~nl~~-- 357 (530)
+++.+..++.. .+..+.+.++.+++.++........ ..++.++..+ .....+ ..+++++.++.
T Consensus 684 ~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~-----~~l~~~~~~l~~~~~~~~~~----~~l~l~~~li~~f 754 (963)
T 2x19_B 684 VFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFA-----PMVPQLCEMLGRMYSTIPQA----SALDLTRQLVHIF 754 (963)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTG-----GGHHHHHHHHHHHHHHSCCH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhccccc-----ccHHHHHHHHHHHHHcCCcc----HHHHHHHHHHHHh
Confidence 55555555532 4567888999999888653322211 2234333332 221122 34455555544
Q ss_pred CCH----HHHHHHHHhCcHHHHHHHHhc---CchhHHHHHHHHHHHhhcCCCHHHHHHHHHcC-----ChHHHHhccCCC
Q 009636 358 GNR----EQIQAVIEANIIGPLVALLEN---AEFDIKKEAAWAISNATSGGTHEQIKFLVIQG-----CIKPLCDLLVCP 425 (530)
Q Consensus 358 ~~~----~~~~~l~~~~~i~~L~~ll~~---~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~-----~i~~L~~lL~~~ 425 (530)
+.. ..+..+++ .++..++.++.. .+++++......+..++...... +.... ++..+...++..
T Consensus 755 ~~~~~~~~~~~~~l~-~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~----~~~~~~~~~~i~~~~~~~l~~~ 829 (963)
T 2x19_B 755 AHEPAHFPPIEALFL-LVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDL----FLCERLDVKAVFQCAVLALKFP 829 (963)
T ss_dssp TTCTTTCHHHHHHHH-HHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGG----GGCTTSCHHHHHHHHHHHTTCS
T ss_pred CCCcchHHHHHHHHH-HHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHH----HcCCcccHHHHHHHHHHHcCCC
Confidence 221 22222222 234455555542 35899999999999888643211 11111 345566677889
Q ss_pred ChHHHHHHHHHHHHHHHhh
Q 009636 426 DPRIVTVCLEGLENILKVG 444 (530)
Q Consensus 426 ~~~~~~~al~~l~~ll~~~ 444 (530)
++.+...+++.+..++...
T Consensus 830 ~~~~~~~~l~~l~~l~~~~ 848 (963)
T 2x19_B 830 EAPTVKASCGFFTELLPRC 848 (963)
T ss_dssp CHHHHHHHHHHHHHHGGGT
T ss_pred CHHHHHHHHHHHHHHHhcC
Confidence 9999999999999998653
No 97
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.78 E-value=0.0027 Score=69.58 Aligned_cols=390 Identities=8% Similarity=0.050 Sum_probs=203.0
Q ss_pred CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCC----CCHHHHHHHHHHHHHHhcCChhhHHHHHhCCC
Q 009636 85 NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE----DYPQLQFEAAWALTNIASGTSEHTKVVIDHGA 160 (530)
Q Consensus 85 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~----~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~ 160 (530)
.++..+..++.+++.++.+. .+....-.-..+++.|+.++... ....++..++|+++..+.--......+ ..+
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~-~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L--~~v 541 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTM-SEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL--RTV 541 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSS-CHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHH--HHH
T ss_pred CCHHHHHHHHHHHHHHHcCC-CchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHH--HHH
Confidence 57889999999999887542 22212222234678888887631 113455567799988766221111111 134
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhh------cCChHHHHHhhc---CCCchhHHHHHHHHhhhhcc
Q 009636 161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLS------QGGLVPLLAQLN---GQPKLSMLRNATWTLSNFCR 231 (530)
Q Consensus 161 i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~------~~~i~~Ll~ll~---~~~~~~~~~~a~~~L~~L~~ 231 (530)
+..|+..+..+++.++..|+|+|.+||.+ ++..+.. ...++.++..+. ..-+......+..+++.+..
T Consensus 542 l~~L~~~l~~~~~~v~~~A~~al~~l~~~---c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~ 618 (1023)
T 4hat_C 542 ILKLFEFMHETHEGVQDMACDTFIKIVQK---CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIIS 618 (1023)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHH---HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHHH---HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 66777777777899999999999999965 3333321 113344433331 33456666788888888888
Q ss_pred CCCCCC--hhhhhchHHHHH----Hhhc--CC------C---hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhh
Q 009636 232 GKPQPP--FDQVSPALPALA----HLIH--SN------D---DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL 294 (530)
Q Consensus 232 ~~~~~~--~~~~~~~l~~L~----~ll~--~~------d---~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL 294 (530)
..+... ......+++.+. .+.. +. | .......+.++..++..-......... .+.+.++.+.
T Consensus 619 ~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~~f~~~~~-~i~~~~l~~y 697 (1023)
T 4hat_C 619 EERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLG-HIYYNMLQLY 697 (1023)
T ss_dssp TCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHH
T ss_pred hCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhcHHHHHHHH-HHHHHHHHHH
Confidence 754322 112222222222 2221 01 1 122333444444443221110000010 1122222221
Q ss_pred CC------------C-----Cc------hhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcC----C----Cchh
Q 009636 295 MH------------P-----SP------SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG----N----YKKS 343 (530)
Q Consensus 295 ~~------------~-----~~------~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~----~----~~~~ 343 (530)
+. + .+ .++..+++.+.......+.. ..+...+++.|+..+-. . .++.
T Consensus 698 ~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~--~~~~~~~~~~l~~~vl~dY~~~~~~~r~~~ 775 (1023)
T 4hat_C 698 RAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNL--DDVVKVLVEPLLNAVLEDYMNNVPDARDAE 775 (1023)
T ss_dssp HHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCH--HHHHHHTHHHHHHHHHHHHHHSCGGGCCHH
T ss_pred HHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCH--HHHHHHhHHHHHHHHHHHHHhCChhhccHH
Confidence 10 0 11 12223333333333222211 12223445555444321 1 1344
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC---chhHHHHHHHHHHHhhcCCCH-------HHHHHHHHcC
Q 009636 344 IKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA---EFDIKKEAAWAISNATSGGTH-------EQIKFLVIQG 413 (530)
Q Consensus 344 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~---~~~v~~~a~~aL~nl~~~~~~-------~~~~~l~~~~ 413 (530)
+-.-..-++..+.....+.+..+++ .++..=+.++..+ .|+.|..-...+.++...+.. +..+.
T Consensus 776 vL~l~s~iv~~~~~~~~~~~~~il~-~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~----- 849 (1023)
T 4hat_C 776 VLNCMTTVVEKVGHMIPQGVILILQ-SVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKL----- 849 (1023)
T ss_dssp HHHHHHHHHHHHGGGCHHHHHHHHH-HHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHTSCHHHHHH-----
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHH-HHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHChHHHHcCCHHHHHH-----
Confidence 4444444444554433444444444 3555566667653 588888888888877665422 22222
Q ss_pred ChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHH----HHHhcCCCHHHHHHHHHH
Q 009636 414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKI----ESLQTHDNAEIYEKSVKL 489 (530)
Q Consensus 414 ~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l----~~l~~~~~~~v~~~a~~i 489 (530)
+++.++-.++..+.++...++..+..++....... ...+...|-..-+.+.+ ..+.+..+.-..+.-..+
T Consensus 850 ~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~~~~~------~~~~~~~f~~~~~~~~~~~~~~v~td~~h~~~f~~~~~~ 923 (1023)
T 4hat_C 850 FVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMG------NVPFANEFHKNYFFIFVSETFFVLTDSDHKSGFSKQALL 923 (1023)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHC------SSHHHHHHHHHHHHHHHHHHHHHHHSSSCGGGHHHHHHH
T ss_pred HHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhcC------ChHHHHHHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHH
Confidence 45666667789999999999999999987665321 11234444444444443 345677777777777788
Q ss_pred HHHhCC
Q 009636 490 LETYWL 495 (530)
Q Consensus 490 l~~~~~ 495 (530)
+...|.
T Consensus 924 l~~l~~ 929 (1023)
T 4hat_C 924 LMKLIS 929 (1023)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877665
No 98
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.74 E-value=0.00022 Score=69.73 Aligned_cols=257 Identities=13% Similarity=0.069 Sum_probs=164.4
Q ss_pred cCCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009636 72 LENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151 (530)
Q Consensus 72 ~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~ 151 (530)
++....|+..|-++.+++|.-|+-.||.++...+.. .|.. ...+ . ..|+++++-++-+.
T Consensus 173 fqfcE~L~~DLFdp~WEiRHGAALGLREILR~hG~G-------AGR~-------~~~N-~---DLAvRLLCVLALDR--- 231 (800)
T 3oc3_A 173 LDFFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNG-------GDIQ-------IRVD-S---KLFSKIYEILVTDK--- 231 (800)
T ss_dssp GGTTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC-----------CC-------CCCC-T---THHHHHHHHHHHBC---
T ss_pred HHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccC-------Ccee-------cccc-H---HHHHHHHHHHHhcc---
Confidence 446788889999999999999999999998764211 1111 2222 2 45556666555421
Q ss_pred HHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhc
Q 009636 152 TKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC 230 (530)
Q Consensus 152 ~~~~~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~ 230 (530)
+-.+.++ .-..+|+.|+.+|+.+ ..-+.. ..++..++..+ .....+++..++-.|.++.
T Consensus 232 ------------FGDYVSDqVVAPVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l-~~~~WEVRHGGLLGLKYL~ 291 (800)
T 3oc3_A 232 ------------FNDFVDDRTVAPVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFL-DSGDWQVQFSGLIALGYLK 291 (800)
T ss_dssp ------------CBBCSSSSCBCHHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGG-GCSCHHHHHHHHHHHHHTG
T ss_pred ------------ccccccCeeeeehHHHHHHHHHHH-HhCChh------HHHHHHHHhhc-CCCCeeehhhhHHHHHHHH
Confidence 1112222 1245899999999988 554432 33455555545 5667888888888888881
Q ss_pred cCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCC--chhHHHHHHH
Q 009636 231 RGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS--PSVLIPALRT 308 (530)
Q Consensus 231 ~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~--~~~~~~al~~ 308 (530)
.--. ...++++.++..|.+.|++|+..|+.+|..++ . ++... .++..+...|.+-+ ..........
T Consensus 292 DLL~-----~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA-~-p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdL 359 (800)
T 3oc3_A 292 EFVE-----DKDGLCRKLVSLLSSPDEDIKLLSAELLCHFP-I-TDSLD-----LVLEKCWKNIESEELISVSKTSNLSL 359 (800)
T ss_dssp GGCC-----CHHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC-C-SSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHH
T ss_pred HHHH-----HHHHHHHHHHhhcCCcccHHHHHHHHHhhhhc-c-hhhHH-----HHHHHHHHHhhhhcccchhhHHHHHH
Confidence 1111 16778888999999999999999999999888 2 22233 33445555554422 2233445566
Q ss_pred HhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHH
Q 009636 309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKK 388 (530)
Q Consensus 309 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~ 388 (530)
|+.++...... -.+...+|.|.+.+.+. -..||..+..+|..+. +....+.+.+ .+|-..+.+++.
T Consensus 360 LAkL~s~p~~a---~~dp~LVPRL~PFLRHt-ITSVR~AVL~TL~tfL--~~~~LRLIFQ--------NILLE~neeIl~ 425 (800)
T 3oc3_A 360 LTKIYRENPEL---SIPPERLKDIFPCFTSP-VPEVRTSILNMVKNLS--EESIDFLVAE--------VVLIEEKDEIRE 425 (800)
T ss_dssp HHHHHHHCTTC---CCCSGGGGGTGGGGTCS-SHHHHHHHHHHTTTCC--CHHHHHHHHH--------HHHHCSCHHHHH
T ss_pred HHHHHcCCccc---ccChHHHHHHHhhhcCC-cHHHHHHHHHHHHHHH--hhhHHHHHHH--------HHHhCCcHHHHH
Confidence 66666544321 12347899999999999 9999999999998876 3333222222 345556778888
Q ss_pred HHHHHHH
Q 009636 389 EAAWAIS 395 (530)
Q Consensus 389 ~a~~aL~ 395 (530)
.+..+..
T Consensus 426 lS~~VWk 432 (800)
T 3oc3_A 426 MAIKLLK 432 (800)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777664
No 99
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=97.66 E-value=0.0081 Score=65.77 Aligned_cols=300 Identities=12% Similarity=0.095 Sum_probs=161.4
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHH-HHhhcCCCCHHHHHHHHHHHHHHhcCC-hhhHHHHHh--CC
Q 009636 84 SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRF-VEFLLREDYPQLQFEAAWALTNIASGT-SEHTKVVID--HG 159 (530)
Q Consensus 84 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~L-v~ll~~~~~~~i~~~a~~~L~~l~~~~-~~~~~~~~~--~g 159 (530)
..++++...++.++..+++- -+...+++.++++.+ ..+|. + +.++..|+.||..+.... ++....+.. ..
T Consensus 218 ~~~~~lv~~~L~~L~~~~sW---I~i~~i~~~~ll~~L~~~~L~--~-~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~ 291 (1073)
T 3gjx_A 218 SQNAPLVHATLETLLRFLNW---IPLGYIFETKLISTLIYKFLN--V-PMFRNVSLKCLTEIAGVSVSQYEEQFETLFTL 291 (1073)
T ss_dssp CCCHHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHHHTSS--S-HHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHh---cCHHHhccchHHHHHHHHhcC--C-hHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 45677777888999988765 345677788889888 46663 4 789999999999998743 222222211 12
Q ss_pred ChHHHHHhhC-------------CCCHHHHHHHHHHHHhhhCCCchhhhhHhhc-C-------ChHHHHHhhcCCCchhH
Q 009636 160 AVPIFVKLLY-------------SPSDDVREQAVWALGNIAGDSPRCRDLVLSQ-G-------GLVPLLAQLNGQPKLSM 218 (530)
Q Consensus 160 ~i~~L~~ll~-------------~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~-~-------~i~~Ll~ll~~~~~~~~ 218 (530)
++..+..++. ..+.+.....+..+..+.... ...+... + ++..++.+- ..++.++
T Consensus 292 ~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~---~~lIe~~p~~~~~l~~~l~~ll~~s-~~~d~ei 367 (1073)
T 3gjx_A 292 TMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEH---GQLLEKRLNLREALMEALHYMLLVS-EVEETEI 367 (1073)
T ss_dssp HHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHH---HHHHHHCGGGHHHHHHHHHHHHHHT-TCSCHHH
T ss_pred HHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHH---HHHHhcCccchHHHHHHHHHHHHHh-CCCcHHH
Confidence 2222222221 122344444444554443211 1111111 1 233334433 5668888
Q ss_pred HHHHHHHhhhhccCC----C-----CC------------ChhhhhchHHHHHH----hhcCCC-----------------
Q 009636 219 LRNATWTLSNFCRGK----P-----QP------------PFDQVSPALPALAH----LIHSND----------------- 256 (530)
Q Consensus 219 ~~~a~~~L~~L~~~~----~-----~~------------~~~~~~~~l~~L~~----ll~~~d----------------- 256 (530)
.+.+......|...- + .+ ......+++..|.. -+..++
T Consensus 368 ~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~ 447 (1073)
T 3gjx_A 368 FKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFM 447 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHH
Confidence 888887776665421 1 00 00112233332322 222111
Q ss_pred ---h-----hHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC--CCchhHHHHHHHHhHhhcCCchhhHHHhhc
Q 009636 257 ---D-----EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH--PSPSVLIPALRTVGNIVTGDDMQTQCVIEY 326 (530)
Q Consensus 257 ---~-----~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~~~~~al~~L~nl~~~~~~~~~~~~~~ 326 (530)
. +...+++..+.++. ..+.... .++.+...+.. .+|.....++|++|.++..-....+.-.-.
T Consensus 448 ~d~~~~~ly~~mrd~L~~lt~l~--~~~~~~i-----~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp 520 (1073)
T 3gjx_A 448 KDTDSINLYKNMRETLVYLTHLD--YVDTEII-----MTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLV 520 (1073)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHC--HHHHHHH-----HHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHHHHHhcCC--HHHHHHH-----HHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHH
Confidence 0 12222332333222 1222221 23344444443 468899999999999985433222222223
Q ss_pred CchHHHHHhhcCCC----chhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCC
Q 009636 327 QALPCLLNLLSGNY----KKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGT 402 (530)
Q Consensus 327 ~~l~~L~~lL~~~~----~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~ 402 (530)
.+++.|+.+..+.. ...++...+|++|..+.--..+...+ ..++..|++.+...++.|+..|+.++..++..+.
T Consensus 521 ~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L--~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~ 598 (1073)
T 3gjx_A 521 TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFL--KTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCR 598 (1073)
T ss_dssp HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHH--HHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTG
T ss_pred HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 56677777665431 23456667899999876322222222 1356677888888889999999999999987553
No 100
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.52 E-value=0.0019 Score=59.76 Aligned_cols=193 Identities=11% Similarity=0.086 Sum_probs=126.3
Q ss_pred cCCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcH-HHHH--HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC
Q 009636 72 LENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPI-EEVI--RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT 148 (530)
Q Consensus 72 ~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~-~~~~--~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~ 148 (530)
+..+| +-+.|.|.++..|..|+..+.+++........ .... -....+.+...+.+.+ ..++..++.++..++...
T Consensus 9 ~sklp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN-~~v~~~al~~l~~~~~~~ 86 (278)
T 4ffb_C 9 YTTLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSN-VVAQEQAIVALNSLIDAF 86 (278)
T ss_dssp --CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSS-HHHHHHHHHHHHHHHTTC
T ss_pred hhcCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHh
Confidence 34556 66889999999999999999998865321111 1111 1234566777887777 899999999999887632
Q ss_pred h-----hhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHH
Q 009636 149 S-----EHTKVVIDHGAVPIFVK-LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNA 222 (530)
Q Consensus 149 ~-----~~~~~~~~~g~i~~L~~-ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a 222 (530)
. .......-..+++.|+. .+.+....++..+..++..++...... .. ++..++..+ .+.++.++..+
T Consensus 87 ~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~~-----~~e~l~~~l-~~Knpkv~~~~ 159 (278)
T 4ffb_C 87 ASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-TQ-----SVELVIPFF-EKKLPKLIAAA 159 (278)
T ss_dssp C---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-HH-----HHHHHGGGG-GCSCHHHHHHH
T ss_pred hhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-HH-----HHHHHHHHH-hccCHHHHHHH
Confidence 1 11111112345677775 477788889998888887776332211 11 244555566 67788888888
Q ss_pred HHHhhhhccCC--CCCC-hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC
Q 009636 223 TWTLSNFCRGK--PQPP-FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG 273 (530)
Q Consensus 223 ~~~L~~L~~~~--~~~~-~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~ 273 (530)
+.+|..+.... .... ......+++.+..++.+.|+.|+..+..++..+...
T Consensus 160 l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 160 ANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 88888776542 1111 223455677788899999999999999998777543
No 101
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.40 E-value=0.0048 Score=67.52 Aligned_cols=307 Identities=10% Similarity=-0.004 Sum_probs=165.6
Q ss_pred CCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCch--hhhhHhhcCChHH
Q 009636 128 EDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR--CRDLVLSQGGLVP 205 (530)
Q Consensus 128 ~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~--~~~~i~~~~~i~~ 205 (530)
.+ +.+...++.+|......- ....++..+.++.+.+++.. +.++..|+.+|..+...... .+..++..=.+..
T Consensus 205 ~~-~~l~~~~L~~l~s~i~wi--~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~ 279 (980)
T 3ibv_A 205 KN-YGTVGLCLQVYAQWVSWI--NINLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNL 279 (980)
T ss_dssp TC-HHHHHHHHHHHHHHTTTS--CHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHHHHhhc--CHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHH
Confidence 55 889999999999998832 23456666788888888864 78999999999999854432 2222221101122
Q ss_pred HHHhhcC-CCchhHHHHHHHHhhhhc------cCCCC-CC-------hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHh
Q 009636 206 LLAQLNG-QPKLSMLRNATWTLSNFC------RGKPQ-PP-------FDQVSPALPALAHLIHSNDDEVLTDACWALSYL 270 (530)
Q Consensus 206 Ll~ll~~-~~~~~~~~~a~~~L~~L~------~~~~~-~~-------~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l 270 (530)
.+..+.. ..|.+..+..+..+..++ ...+. .. .....++++.++.++.+++.++...++..+..+
T Consensus 280 ~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~ 359 (980)
T 3ibv_A 280 FFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDL 359 (980)
T ss_dssp HHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHH
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHH
Confidence 2222212 456666554444443221 11121 11 134467889999999998888877665555443
Q ss_pred ccC-----C----hHHHHHHHHhCcHHHHHHhhCCCCc----------------hhHHHHHHHHhHhhcCCchhhHHHhh
Q 009636 271 SDG-----T----NDKIQAVIEAGVFPRLAEFLMHPSP----------------SVLIPALRTVGNIVTGDDMQTQCVIE 325 (530)
Q Consensus 271 ~~~-----~----~~~~~~~~~~~~l~~L~~lL~~~~~----------------~~~~~al~~L~nl~~~~~~~~~~~~~ 325 (530)
... . ......++. .+++.++.-+..++. ..|......+..++.-.+...-..+-
T Consensus 360 l~~~~~~~~~~~~~~~~~~~l~-~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~ 438 (980)
T 3ibv_A 360 LVSLRKESSSKELSASLKEFLK-SLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMY 438 (980)
T ss_dssp HHHHHHHTTSCCCCHHHHHHHH-HHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHhccccccccHHHHHHHH-HHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 311 0 111121222 344445554543211 12222221111221111111111000
Q ss_pred cCchHHHHHhhc---CCCchhHHHHHHHHHHHHhcCCHHHHHHHH-H----hCcHHHHHHHHh-----cCchhHHHHHHH
Q 009636 326 YQALPCLLNLLS---GNYKKSIKKEACWTVSNITAGNREQIQAVI-E----ANIIGPLVALLE-----NAEFDIKKEAAW 392 (530)
Q Consensus 326 ~~~l~~L~~lL~---~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~----~~~i~~L~~ll~-----~~~~~v~~~a~~ 392 (530)
.-+.+.+...+. +. +...++.+..+|+.++.+......... . ..+++.+..++. ..++.|+..+++
T Consensus 439 ~~i~~~l~~~l~~~~~~-~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~ 517 (980)
T 3ibv_A 439 SAITSSLSTAATLSPEN-SWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYME 517 (980)
T ss_dssp HHHHHHHHHHTTSCHHH-HHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCC-CHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 012222323332 12 456788899999999875332111000 0 014455666655 567999999999
Q ss_pred HHHHhhcCC--CHHHHHHHHHcCChHHHHh--ccCCCChHHHHHHHHHHHHHHHhhhh
Q 009636 393 AISNATSGG--THEQIKFLVIQGCIKPLCD--LLVCPDPRIVTVCLEGLENILKVGEA 446 (530)
Q Consensus 393 aL~nl~~~~--~~~~~~~l~~~~~i~~L~~--lL~~~~~~~~~~al~~l~~ll~~~~~ 446 (530)
+++..+..- .++... .++..+++ .+.++++.++..|..++.++++....
T Consensus 518 ~l~rys~~~~~~~~~l~-----~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~ 570 (980)
T 3ibv_A 518 ILVRYASFFDYESAAIP-----ALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK 570 (980)
T ss_dssp HHHHTGGGGGTCCTTHH-----HHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCchhHH-----HHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhH
Confidence 999987632 222222 23555555 55567888999999999999987654
No 102
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=97.39 E-value=0.017 Score=52.93 Aligned_cols=294 Identities=17% Similarity=0.177 Sum_probs=177.0
Q ss_pred HHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhc-CCChhHHH
Q 009636 183 LGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH-SNDDEVLT 261 (530)
Q Consensus 183 L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~-~~d~~v~~ 261 (530)
|.|+..+....-+-+++.+++..+...+ ..++.++.+..+..|...+... ..........+|.++..+. +++.++..
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~Tvi-nYpN~~l~RaG~KLLLQVSDak-sL~~t~L~e~LPFi~~~i~~h~eDdvvY 343 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVV-QYPNNDLIRAGCKLLLQVSDAK-ALAKTPLENILPFLLRLIEIHPDDEVIY 343 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHT-TSSCHHHHHHHHHHHHHHTTCG-GGGTSCCTTHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEe-ecCCcHHHHhhhheeeeecchH-HHhhccccccchHHHHHhccCCCcceEE
Confidence 3444455555667777888888888888 7788999999999998888764 2233344677888888776 67899999
Q ss_pred HHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC-------Cch-------hHHHHHHHHhHhhc-------------
Q 009636 262 DACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP-------SPS-------VLIPALRTVGNIVT------------- 314 (530)
Q Consensus 262 ~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-------~~~-------~~~~al~~L~nl~~------------- 314 (530)
.....++|...+........+..|.+..|...+... +.. +...+++++.|...
T Consensus 344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~~ 423 (619)
T 3c2g_A 344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKTA 423 (619)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCCC
T ss_pred ecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCccccC
Confidence 999999999998888778888889999998886542 222 33445555555532
Q ss_pred CC--chhhHHHhhcCchHHHHHhhcCCC-----chhHHHHHHHHHHHHhcCC---HHHH----HHHHHhCcHHHHHHHHh
Q 009636 315 GD--DMQTQCVIEYQALPCLLNLLSGNY-----KKSIKKEACWTVSNITAGN---REQI----QAVIEANIIGPLVALLE 380 (530)
Q Consensus 315 ~~--~~~~~~~~~~~~l~~L~~lL~~~~-----~~~v~~~a~~~L~nl~~~~---~~~~----~~l~~~~~i~~L~~ll~ 380 (530)
|. ..+...+++..++..|+.+|+.+. --++|........-+.... .+.. +.+-..+++-.++-.+.
T Consensus 424 G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlRTP~~Pkd~~l~VtDd~rk~NLvGHIciA~s 503 (619)
T 3c2g_A 424 GPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLRTPFVPKDGVLNVIDENRKENLIGHICAAYS 503 (619)
T ss_dssp CHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHTCTTSCCTTGGGCCCTTTCCCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhcCCCCchhhhccccchhhhhhhHHHHHHHHH
Confidence 11 122334567788899999887642 1244554444433333211 0100 01112233333333221
Q ss_pred c-----Cc-------hhHHHHHHHHHHHhhcCC-CHHHHHHHHHcCChHHHHhccCCC--ChHHHHHHHHHHHHHHHhhh
Q 009636 381 N-----AE-------FDIKKEAAWAISNATSGG-THEQIKFLVIQGCIKPLCDLLVCP--DPRIVTVCLEGLENILKVGE 445 (530)
Q Consensus 381 ~-----~~-------~~v~~~a~~aL~nl~~~~-~~~~~~~l~~~~~i~~L~~lL~~~--~~~~~~~al~~l~~ll~~~~ 445 (530)
. .+ ..+.+.+...|..+...+ ..++... ....++.=+.+|+++ .|....+++..-.++++.++
T Consensus 504 Wa~~Q~tNertqdTkqQLiER~fSLL~~LmEQc~~E~qVAh--~~YsIsCPLnlLn~nQ~KP~FI~NVL~VcDKILeHcP 581 (619)
T 3c2g_A 504 WVFRQPNNTRTQSTKQQLVERTISLLLVLMEQCGAEKEVAQ--YSYSIDCPLNLLNGNQVKPTFIHNVLVVCDKILEHCP 581 (619)
T ss_dssp HHHHSCCCTTTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH--TTTTSCCGGGGGSSCCCCHHHHHHHHHHHHHHHHHCT
T ss_pred HhhcCccccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHh--heeeccCchhhhcccccChHHHHHHHHHHHHHHHhCc
Confidence 1 11 123344445555554432 2222111 011233334566544 56677778888888888776
Q ss_pred hhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009636 446 AEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETY 493 (530)
Q Consensus 446 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~ 493 (530)
.... .-. ---..++.+.+|.|+++...|..++.+|
T Consensus 582 ~~Ad-----------~W~--i~r~tle~l~NHsNsDIa~aasSLL~rf 616 (619)
T 3c2g_A 582 TRAD-----------IWT--IDRPMLEGLTNHRNSDIAKAANSLLSRF 616 (619)
T ss_dssp THHH-----------HSC--CCHHHHHHHHTCSSHHHHHHHHHHHTTS
T ss_pred chhc-----------cce--echHHHHHHhcCCCchHHHHHHHHHHhC
Confidence 5321 100 0124678889999999999999999876
No 103
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.38 E-value=0.0051 Score=56.79 Aligned_cols=189 Identities=11% Similarity=0.122 Sum_probs=126.2
Q ss_pred HHHhhCCCCchhHHHHHHHHhHhhcCCchhh--HHHh--hcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCC-H----
Q 009636 290 LAEFLMHPSPSVLIPALRTVGNIVTGDDMQT--QCVI--EYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN-R---- 360 (530)
Q Consensus 290 L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~--~~~~--~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~-~---- 360 (530)
+-+-|.+.+|..|..|+..+..+....+... .... -....+.+...+.+. +..+...++.++..++... .
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~Ds-N~~v~~~al~~l~~~~~~~~~~~~~ 92 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDS-NVVAQEQAIVALNSLIDAFASSSLK 92 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCS-SHHHHHHHHHHHHHHHTTCC---CC
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 5577899999999999999988876543221 1111 123556677788777 8999999999999887521 1
Q ss_pred HHHHHHHHhCcHHHHHHH-HhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHH
Q 009636 361 EQIQAVIEANIIGPLVAL-LENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLEN 439 (530)
Q Consensus 361 ~~~~~l~~~~~i~~L~~l-l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ 439 (530)
.......-..+++.|++- +.+....++..|..++..++....+.. .+++.+...+++.+|+++..++..|..
T Consensus 93 ~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~-------~~~e~l~~~l~~Knpkv~~~~l~~l~~ 165 (278)
T 4ffb_C 93 NAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT-------QSVELVIPFFEKKLPKLIAAAANCVYE 165 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH-------HHHHHHGGGGGCSCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH-------HHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 111111223467777764 667778899999988888775432111 135677788999999999999999999
Q ss_pred HHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009636 440 ILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL 495 (530)
Q Consensus 440 ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~ 495 (530)
++....... .+ ....+ ...+..+..+.++.|++|++.|..++-.+|-
T Consensus 166 ~l~~fg~~~------~~-~k~~l--~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 166 LMAAFGLTN------VN-VQTFL--PELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHHTTTT------CC-HHHHH--HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCc------CC-chhHH--HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 986532211 11 01111 1224566777899999999999999877664
No 104
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=97.33 E-value=0.049 Score=59.65 Aligned_cols=310 Identities=12% Similarity=0.147 Sum_probs=167.0
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHH-HHhhCCCCHHHHHHHHHHHHhhhCCC-chhhh
Q 009636 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIF-VKLLYSPSDDVREQAVWALGNIAGDS-PRCRD 195 (530)
Q Consensus 118 v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L-~~ll~~~~~~i~~~a~~~L~nl~~~~-~~~~~ 195 (530)
++.+..+|....++.+...++.+|..+.+--+ ...+++.+.++.+ ..+| .++.++..|+.+|..|.+.. +.+.+
T Consensus 208 l~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~--i~~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k~~~~~~~ 283 (1073)
T 3gjx_A 208 FQLCQFVMENSQNAPLVHATLETLLRFLNWIP--LGYIFETKLISTLIYKFL--NVPMFRNVSLKCLTEIAGVSVSQYEE 283 (1073)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC--THHHHSSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHSCSGGGHH
T ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHHHHhcC--HHHhccchHHHHHHHHhc--CChHHHHHHHHHHHHHHhccccchHH
Confidence 33344455444448888889999999887432 4467788888888 4666 46789999999999988542 22222
Q ss_pred hHhh--cCChHHHHHhh------------cCCCchhHHHHHHHHhhhhccCCC-----CCC-hhhhhchHHHHHHhhcCC
Q 009636 196 LVLS--QGGLVPLLAQL------------NGQPKLSMLRNATWTLSNFCRGKP-----QPP-FDQVSPALPALAHLIHSN 255 (530)
Q Consensus 196 ~i~~--~~~i~~Ll~ll------------~~~~~~~~~~~a~~~L~~L~~~~~-----~~~-~~~~~~~l~~L~~ll~~~ 255 (530)
.+.. ..++..+-.++ ....+.+.....+.++..+....- .+. ......++..++.+...+
T Consensus 284 ~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~ 363 (1073)
T 3gjx_A 284 QFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVE 363 (1073)
T ss_dssp HHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCC
Confidence 2211 01111111111 123355667777777766554320 001 112233444556666677
Q ss_pred ChhHHHHHHHHHHHhccC----C------------------hHHHHHHHH---hCcHHHHHHhhCCCCc-----------
Q 009636 256 DDEVLTDACWALSYLSDG----T------------------NDKIQAVIE---AGVFPRLAEFLMHPSP----------- 299 (530)
Q Consensus 256 d~~v~~~a~~~l~~l~~~----~------------------~~~~~~~~~---~~~l~~L~~lL~~~~~----------- 299 (530)
|.++...++..-..+... . ... ..+.. ..+...++.-+..+..
T Consensus 364 d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~-~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~ 442 (1073)
T 3gjx_A 364 ETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPR-RQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEV 442 (1073)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHH-HHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCE
T ss_pred cHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhH-HHHHHHHHHHHHHHHHHhcCCCccccccCcccchH
Confidence 888776655443333210 0 011 11111 0222333333333211
Q ss_pred --------------hhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCC-CchhHHHHHHHHHHHHhcC-CHH-H
Q 009636 300 --------------SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-YKKSIKKEACWTVSNITAG-NRE-Q 362 (530)
Q Consensus 300 --------------~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~-~~~-~ 362 (530)
+....++..+.++. ...+.. -+++.+...+..+ .+......+||+++.++.. .++ .
T Consensus 443 ~re~~~d~~~~~ly~~mrd~L~~lt~l~---~~~~~~----i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E 515 (1073)
T 3gjx_A 443 VREFMKDTDSINLYKNMRETLVYLTHLD---YVDTEI----IMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDE 515 (1073)
T ss_dssp EEEECSSCHHHHHHHHHHHHHHHHHHHC---HHHHHH----HHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHH
T ss_pred HHHHHhhcchHHHHHHHHHHHHHHhcCC---HHHHHH----HHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccc
Confidence 01122222222222 111111 1233444444432 2577889999999999763 322 2
Q ss_pred HHHHHHhCcHHHHHHHHhcC---c--hhHHHHHHHHHHHhhcC--CCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHH
Q 009636 363 IQAVIEANIIGPLVALLENA---E--FDIKKEAAWAISNATSG--GTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLE 435 (530)
Q Consensus 363 ~~~l~~~~~i~~L~~ll~~~---~--~~v~~~a~~aL~nl~~~--~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~ 435 (530)
...+. .+++.|+.+.... + ..++...+|+++..... .+++..+. ++..|...+...++.++..|+.
T Consensus 516 ~~~Lp--~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~-----vl~~L~~~m~~~~~~vq~aA~~ 588 (1073)
T 3gjx_A 516 KRFLV--TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKT-----VVNKLFEFMHETHDGVQDMACD 588 (1073)
T ss_dssp HHHHH--HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHH-----HHHHHHHHTTCCSTTHHHHHHH
T ss_pred cchHH--HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHH-----HHHHHHHHHhcCCHHHHHHHHH
Confidence 22233 3677777776544 2 33555566888776542 13343333 5777888888889999999999
Q ss_pred HHHHHHHhhhh
Q 009636 436 GLENILKVGEA 446 (530)
Q Consensus 436 ~l~~ll~~~~~ 446 (530)
++.+++..+..
T Consensus 589 af~~i~~~C~~ 599 (1073)
T 3gjx_A 589 TFIKIAQKCRR 599 (1073)
T ss_dssp HHHHHHHHTGG
T ss_pred HHHHHHHHHHH
Confidence 99999987754
No 105
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.20 E-value=0.006 Score=55.06 Aligned_cols=181 Identities=14% Similarity=0.091 Sum_probs=117.3
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcC----CchhhHH
Q 009636 247 ALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG----DDMQTQC 322 (530)
Q Consensus 247 ~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~----~~~~~~~ 322 (530)
.+...+.+.|..-...++..|........+.....++ .++..+.-.+.+.+..+...++.+|..+... .......
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lD-ll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ 128 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSD-LLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQE 128 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHH-HHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence 3455555666666666666665544333322211111 1233333234467888888888888776431 1111111
Q ss_pred HhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCC
Q 009636 323 VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG 401 (530)
Q Consensus 323 ~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 401 (530)
- -.-++|.|+.-+-+. ...+|..+-.++..++. .++. .+++.+++-+.+.+.++|.+++..+..+....
T Consensus 129 e-a~~~lP~LveKlGd~-k~~vR~~~r~il~~l~~v~~~~--------~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~ 198 (266)
T 2of3_A 129 E-VSAFVPYLLLKTGEA-KDNMRTSVRDIVNVLSDVVGPL--------KMTPMLLDALKSKNARQRSECLLVIEYYITNA 198 (266)
T ss_dssp H-HHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHCCHH--------HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc
Confidence 0 124689999999888 78899888877766654 2222 36677888888899999999999999987622
Q ss_pred CHHHHHHHHHcCCh---HHHHhccCCCChHHHHHHHHHHHHHHHhh
Q 009636 402 THEQIKFLVIQGCI---KPLCDLLVCPDPRIVTVCLEGLENILKVG 444 (530)
Q Consensus 402 ~~~~~~~l~~~~~i---~~L~~lL~~~~~~~~~~al~~l~~ll~~~ 444 (530)
... ....+ +.+..++.+.|..++..|+.++..+....
T Consensus 199 G~~------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~ 238 (266)
T 2of3_A 199 GIS------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFE 238 (266)
T ss_dssp CSG------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHH
T ss_pred CCC------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence 111 23468 99999999999999999999998877543
No 106
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.10 E-value=0.013 Score=52.96 Aligned_cols=177 Identities=16% Similarity=0.099 Sum_probs=114.8
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc---CCCchhHHHHHHHHhhhhc----cCCCC
Q 009636 163 IFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN---GQPKLSMLRNATWTLSNFC----RGKPQ 235 (530)
Q Consensus 163 ~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~---~~~~~~~~~~a~~~L~~L~----~~~~~ 235 (530)
.+...+-+.+..-+..++..|.......+. ..+. .+..+++.+. .+.+..+...++.+|..+. .....
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~~--~~~~---~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~ 124 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADTSPR--SLLS---NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETP 124 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHCHH--HHHH---THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhChH--HHHH---HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence 344455555666666666666554433221 1111 2222222221 3557777777777766653 32233
Q ss_pred CChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcC
Q 009636 236 PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG 315 (530)
Q Consensus 236 ~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~ 315 (530)
........++|.|+.-+.+..+.++..+-.++..+..- .-...+++.++.-+.+.++..+..++..++.+...
T Consensus 125 ~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v-------~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~ 197 (266)
T 2of3_A 125 MSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV-------VGPLKMTPMLLDALKSKNARQRSECLLVIEYYITN 197 (266)
T ss_dssp CCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH-------HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH-------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 33344567899999999888888988877776555421 11124667788889999999999999999999753
Q ss_pred CchhhHHHhhcCch---HHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009636 316 DDMQTQCVIEYQAL---PCLLNLLSGNYKKSIKKEACWTVSNITA 357 (530)
Q Consensus 316 ~~~~~~~~~~~~~l---~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 357 (530)
.... ....+ +.+..++.+. +..||..|..++..+-.
T Consensus 198 ~G~~-----~~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 198 AGIS-----PLKSLSVEKTVAPFVGDK-DVNVRNAAINVLVACFK 236 (266)
T ss_dssp HCSG-----GGGGGCHHHHHGGGGGCS-SHHHHHHHHHHHHHHHH
T ss_pred cCCC-----ccccccchHHHHHHHcCC-CHHHHHHHHHHHHHHHH
Confidence 3222 23467 9999999998 99999999999987755
No 107
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=97.06 E-value=0.097 Score=48.30 Aligned_cols=202 Identities=13% Similarity=0.072 Sum_probs=148.1
Q ss_pred HHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCch----hhHHHhh-cCchHHHHHhhcCCCchhHHHHHHHHH
Q 009636 278 IQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM----QTQCVIE-YQALPCLLNLLSGNYKKSIKKEACWTV 352 (530)
Q Consensus 278 ~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~----~~~~~~~-~~~l~~L~~lL~~~~~~~v~~~a~~~L 352 (530)
.+.+...+++..|+..|..-+...+..+..+++++.+.... ..+.+.. ..++..|+.-.. ++++--.+...|
T Consensus 71 ~~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe---~~diAl~~G~mL 147 (341)
T 1upk_A 71 AQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE---SPEIALNCGIML 147 (341)
T ss_dssp HHHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG---STTTHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc---cchhHhHHHHHH
Confidence 34566779999999999998999999999999999875432 2233332 234444444433 445555555555
Q ss_pred HHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHc---CChHHHHhccCCCChHH
Q 009636 353 SNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQ---GCIKPLCDLLVCPDPRI 429 (530)
Q Consensus 353 ~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~---~~i~~L~~lL~~~~~~~ 429 (530)
..++.+ ......++..+.+..+.+.++.++.++...|..++..+.... ...+..++.. .+...+..+|.+++.-+
T Consensus 148 Recir~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~H-k~lvaefL~~nyd~Ff~~y~~Ll~S~NYVT 225 (341)
T 1upk_A 148 RECIRH-EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRH-KLLSAEFLEQHYDRFFSEYEKLLHSENYVT 225 (341)
T ss_dssp HHHHTS-HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHTHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHh-HHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcc-HHHHHHHHHHhHHHHHHHHHHHhcCCcchh
Confidence 555544 566777788888889999999999999999999999998763 3444444433 34777888999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHH
Q 009636 430 VTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLET 492 (530)
Q Consensus 430 ~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~ 492 (530)
+..++..|+.++-.-.+..- ....+.+..-+..+..|..+++..|+-.|..+..=
T Consensus 226 kRQSlKLLgelLldr~N~~v--------M~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKv 280 (341)
T 1upk_A 226 KRQSLKLLGELLLDRHNFTI--------MTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKV 280 (341)
T ss_dssp HHHHHHHHHHHHHSGGGHHH--------HHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchHHHH--------HHHHhCCHHHHHHHHHHhcCchhchhhhhhhheee
Confidence 99999999999977555332 35566667778888899999999999888887763
No 108
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=97.03 E-value=0.032 Score=51.47 Aligned_cols=201 Identities=15% Similarity=0.153 Sum_probs=138.9
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhh----hhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhh
Q 009636 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR----DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF 229 (530)
Q Consensus 154 ~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~----~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L 229 (530)
.+...+.+..|+..|..-+-+.+..+..++.++.......+ +.+.. -...+..++....++++.-.+...|...
T Consensus 73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLRec 150 (341)
T 1upk_A 73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLREC 150 (341)
T ss_dssp HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHHH
Confidence 34556788889999988888999999999999986554322 22222 1222233332334556666666666666
Q ss_pred ccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHh---CcHHHHHHhhCCCCchhHHHHH
Q 009636 230 CRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVFPRLAEFLMHPSPSVLIPAL 306 (530)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~l~~L~~lL~~~~~~~~~~al 306 (530)
.++..........+.+-.+...++.++=++..+|..++..+..........++.. .++...-.+|.+++.-++..++
T Consensus 151 ir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSl 230 (341)
T 1upk_A 151 IRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL 230 (341)
T ss_dssp HTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHH
Confidence 5554333333334455566677778888899999999988876655555555543 3577788899999999999999
Q ss_pred HHHhHhhcCCch---hhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009636 307 RTVGNIVTGDDM---QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (530)
Q Consensus 307 ~~L~nl~~~~~~---~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 357 (530)
..||.+...... ....+-+..-+..++.+|++. +..++.+|..+.--+.+
T Consensus 231 KLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~-sk~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 231 KLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVA 283 (341)
T ss_dssp HHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc-hhchhhhhhhheeeeee
Confidence 999999864322 222333556789999999999 99999999998887776
No 109
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.95 E-value=0.066 Score=47.17 Aligned_cols=187 Identities=12% Similarity=0.119 Sum_probs=124.6
Q ss_pred ChhHHHHHHHHHHHhccCChHHHHHHHH-hCcHHHHHHh-------hCCCCc-----hhHHHHHHHHhHhhcCCchhhHH
Q 009636 256 DDEVLTDACWALSYLSDGTNDKIQAVIE-AGVFPRLAEF-------LMHPSP-----SVLIPALRTVGNIVTGDDMQTQC 322 (530)
Q Consensus 256 d~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~l~~L~~l-------L~~~~~-----~~~~~al~~L~nl~~~~~~~~~~ 322 (530)
+++.++.|+..|+.=-+.-++....+.. .|.+..|++= +..+.- .-...|+..+-.++. +++.+..
T Consensus 14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAs-hpetr~~ 92 (268)
T 2fv2_A 14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVAS-HPETRSA 92 (268)
T ss_dssp STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHH-CTTTHHH
T ss_pred CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHc-CcchhhH
Confidence 4455677666665543433333333332 2554444332 222221 123455666666675 5556667
Q ss_pred HhhcCchHHHHHhhcCCC----chhHHHHHHHHHHHHhc-CCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHh
Q 009636 323 VIEYQALPCLLNLLSGNY----KKSIKKEACWTVSNITA-GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNA 397 (530)
Q Consensus 323 ~~~~~~l~~L~~lL~~~~----~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 397 (530)
++++++.-.|..+|+... -+.+|-.+..+++.+.. ++++.+..+++.+++|..++.++.++.-.|.-|...+..+
T Consensus 93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKI 172 (268)
T 2fv2_A 93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI 172 (268)
T ss_dssp HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 888998888888887652 24688889999999987 7889999999999999999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHc--------CChHHH-HhccCCCChHHHHHHHHHHHHHHHhhh
Q 009636 398 TSGGTHEQIKFLVIQ--------GCIKPL-CDLLVCPDPRIVTVCLEGLENILKVGE 445 (530)
Q Consensus 398 ~~~~~~~~~~~l~~~--------~~i~~L-~~lL~~~~~~~~~~al~~l~~ll~~~~ 445 (530)
.. +.....++... .++..+ ..+.+.+++.+...++.+...+.....
T Consensus 173 L~--dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~r 227 (268)
T 2fv2_A 173 LL--DDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPR 227 (268)
T ss_dssp HH--SHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHH
T ss_pred hc--cchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHH
Confidence 87 33555544321 123333 234467788888888888887775543
No 110
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.84 E-value=0.19 Score=48.69 Aligned_cols=155 Identities=15% Similarity=0.119 Sum_probs=107.0
Q ss_pred HHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhc
Q 009636 164 FVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSP 243 (530)
Q Consensus 164 L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~ 243 (530)
++...+ .+...+..|+..|.....+-|..++. ++..++.++ .+.+..++..|+..|..+|.+ .....
T Consensus 34 Il~~~k-g~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLc-EDed~~IR~qaik~Lp~~ck~------~~i~k 100 (507)
T 3u0r_A 34 ILDGVK-GGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLC-EDEDVSIRRQAIKELPQFATG------ENLPR 100 (507)
T ss_dssp HHHGGG-SCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHH-TCSSHHHHHHHHHHGGGGCCT------TCHHH
T ss_pred HHHhcC-CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhhHHHhhh------hhhhh
Confidence 344433 56889999999999999888877666 688899999 888999999999999999987 23677
Q ss_pred hHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcC-CchhhHH
Q 009636 244 ALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG-DDMQTQC 322 (530)
Q Consensus 244 ~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~-~~~~~~~ 322 (530)
+..+|+++|.++++.-...+-++|..+...++. +.+..+...+.++++.+|..++..|..-... .......
T Consensus 101 iaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~ 172 (507)
T 3u0r_A 101 VADILTQLLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTK 172 (507)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccH
Confidence 888999999998877666666677666654432 2233344444446788898888887554432 1111112
Q ss_pred HhhcCchHHHHHhhcCC
Q 009636 323 VIEYQALPCLLNLLSGN 339 (530)
Q Consensus 323 ~~~~~~l~~L~~lL~~~ 339 (530)
-++.-++..+.++|.+-
T Consensus 173 E~E~~i~~~ikK~L~DV 189 (507)
T 3u0r_A 173 EVEELILTESKKVLEDV 189 (507)
T ss_dssp HHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHhccc
Confidence 22334455566666443
No 111
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.59 E-value=0.011 Score=58.16 Aligned_cols=246 Identities=13% Similarity=0.073 Sum_probs=159.3
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCch--hhhhHhhcCChHHHHHhhc---------CCCchhHHHHHHHHhhh
Q 009636 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR--CRDLVLSQGGLVPLLAQLN---------GQPKLSMLRNATWTLSN 228 (530)
Q Consensus 160 ~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~--~~~~i~~~~~i~~Ll~ll~---------~~~~~~~~~~a~~~L~~ 228 (530)
+...|+.-|-++.+++|..|+.+|..+...... .+.........-.++-++. +..-..+++.|+.+|+.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 456677777789999999999999988733211 0110011122222222221 12245789999999999
Q ss_pred hccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHH
Q 009636 229 FCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRT 308 (530)
Q Consensus 229 L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~ 308 (530)
+ ..-+.. ..++..++..+.....+++..++-.|.++.+--. . . .++++.++..|.+.+.+++..|+.+
T Consensus 255 L-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~----~-L-d~Vv~aVL~GL~D~DDDVRAVAAet 322 (800)
T 3oc3_A 255 I-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVE----D-K-DGLCRKLVSLLSSPDEDIKLLSAEL 322 (800)
T ss_dssp H-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCC----C-H-HHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred H-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHH----H-H-HHHHHHHHhhcCCcccHHHHHHHHH
Confidence 9 554443 3455666666677889999999999999822111 1 2 3678888888999999999999999
Q ss_pred HhHhhcCCchhhHHHhhcCchHHHHHhhcCCCch-hHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHH
Q 009636 309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKK-SIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIK 387 (530)
Q Consensus 309 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~-~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 387 (530)
|..++ .+... ..++..+...|.+-.+- .-.......|+.++..... ...+...+|.|...+.+.-..||
T Consensus 323 LiPIA--~p~~l-----~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRHtITSVR 392 (800)
T 3oc3_A 323 LCHFP--ITDSL-----DLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTSPVPEVR 392 (800)
T ss_dssp HTTSC--CSSTH-----HHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTCSSHHHH
T ss_pred hhhhc--chhhH-----HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcCCcHHHH
Confidence 99998 22222 23466677777654221 2233445566666653321 01123688999999999999999
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHH
Q 009636 388 KEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLE 438 (530)
Q Consensus 388 ~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~ 438 (530)
..++.+|..+.. ....+. .+.++|-.++++++..++.+..
T Consensus 393 ~AVL~TL~tfL~---~~~LRL--------IFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 393 TSILNMVKNLSE---ESIDFL--------VAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHHHTTTCCC---HHHHHH--------HHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---hhHHHH--------HHHHHHhCCcHHHHHHHHHHHH
Confidence 999999988872 232222 2344566788888888887764
No 112
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=96.41 E-value=0.27 Score=45.18 Aligned_cols=178 Identities=15% Similarity=0.156 Sum_probs=122.9
Q ss_pred HHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCc
Q 009636 262 DACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYK 341 (530)
Q Consensus 262 ~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~ 341 (530)
.+...+ ++.-++...+.-+++.+++..+...+...+.++....+..|-..+.... .. ..--...+|.++..+.-..+
T Consensus 262 R~FDLL-~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaks-L~-~t~L~e~LPFi~~~i~~h~e 338 (619)
T 3c2g_A 262 RTFDLL-GLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKA-LA-KTPLENILPFLLRLIEIHPD 338 (619)
T ss_dssp HHHHHH-HHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGG-GG-TSCCTTHHHHHHHHHHHCCC
T ss_pred HHHHHH-HHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHH-Hh-hccccccchHHHHHhccCCC
Confidence 333334 4444555678889999999999999999999999999999988765322 11 01123578888888764448
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC-------chhHHHHHHHHHHHhhc-------------CC
Q 009636 342 KSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA-------EFDIKKEAAWAISNATS-------------GG 401 (530)
Q Consensus 342 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-------~~~v~~~a~~aL~nl~~-------------~~ 401 (530)
.++.......|+|..++........+..|.++.|...+... +..-++.||..++|... +|
T Consensus 339 DdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NG 418 (619)
T 3c2g_A 339 DEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNG 418 (619)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTS
T ss_pred cceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCC
Confidence 88999999999999999888888888999999999987433 33445556655555431 11
Q ss_pred --------CHHHHHHHHHcCChHHHHhccCCCCh------HHHHHHHHHHHHHHH
Q 009636 402 --------THEQIKFLVIQGCIKPLCDLLVCPDP------RIVTVCLEGLENILK 442 (530)
Q Consensus 402 --------~~~~~~~l~~~~~i~~L~~lL~~~~~------~~~~~al~~l~~ll~ 442 (530)
...+...+++.++++.|..+|+-+.- +++..++..+..++.
T Consensus 419 qr~~~G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlR 473 (619)
T 3c2g_A 419 ETKTAGPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLR 473 (619)
T ss_dssp CCCCCCHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHT
T ss_pred ccccCChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhc
Confidence 23455566777888888888864321 355555555554443
No 113
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.08 E-value=0.14 Score=45.07 Aligned_cols=141 Identities=12% Similarity=0.158 Sum_probs=106.2
Q ss_pred HHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC----CHHHHHHHHHHHHHHhc-CChhhHHHHHhCCChHHHH
Q 009636 91 YECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED----YPQLQFEAAWALTNIAS-GTSEHTKVVIDHGAVPIFV 165 (530)
Q Consensus 91 ~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~----~~~i~~~a~~~L~~l~~-~~~~~~~~~~~~g~i~~L~ 165 (530)
..|+..+..+++. ++....+++..+.-.|..+|+..+ ...++..++.+++.+.. ++++....+.+.+++|..+
T Consensus 74 cnaLaLlQcvAsh--petr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCL 151 (268)
T 2fv2_A 74 CNALALLQCVASH--PETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCL 151 (268)
T ss_dssp HHHHHHHHHHHHC--TTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHcC--cchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHH
Confidence 3556666677765 677888889887777788887655 34688889999999886 4577778888999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHh-------hcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC
Q 009636 166 KLLYSPSDDVREQAVWALGNIAGDSPRCRDLVL-------SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (530)
Q Consensus 166 ~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~-------~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~ 233 (530)
+.++.+++-.+..|..++..|..++......+. -..++..++..+...++..+.+++++|-..|+.+.
T Consensus 152 rime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~ 226 (268)
T 2fv2_A 152 RIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNP 226 (268)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSH
T ss_pred HHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCH
Confidence 999999999999999999999876654322211 11234445555556778899999999999998874
No 114
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.08 E-value=0.0051 Score=55.11 Aligned_cols=45 Identities=20% Similarity=0.259 Sum_probs=27.8
Q ss_pred HHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHH
Q 009636 288 PRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTV 352 (530)
Q Consensus 288 ~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L 352 (530)
+.|..++.++++.++..+...++ .+.|..+ .++ +..||..+...|
T Consensus 197 ~~L~~Ll~D~d~~VR~~aa~~l~------------------~~~L~~L-~D~-~~~VR~aa~~~L 241 (244)
T 1lrv_A 197 DDLLELLHDPDWTVRLAAVEHAS------------------LEALREL-DEP-DPEVRLAIAGRL 241 (244)
T ss_dssp GGGGGGGGCSSHHHHHHHHHHSC------------------HHHHHHC-CCC-CHHHHHHHHCCC
T ss_pred HHHHHHHcCCCHHHHHHHHHcCC------------------HHHHHHc-cCC-CHHHHHHHHHHh
Confidence 44666677777777777776643 2334444 555 777877765443
No 115
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=95.98 E-value=0.068 Score=46.70 Aligned_cols=147 Identities=12% Similarity=0.046 Sum_probs=103.1
Q ss_pred hchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHH-hhCCCCchhHHHHHHHHhHhhc-CCchh
Q 009636 242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAE-FLMHPSPSVLIPALRTVGNIVT-GDDMQ 319 (530)
Q Consensus 242 ~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~-lL~~~~~~~~~~al~~L~nl~~-~~~~~ 319 (530)
..+++....+..++..+++..++..|+.+ .... .+++.+.. +...+++.|+..+..+++.++. ..++
T Consensus 70 ~~~~~la~~L~~~~~deVR~~Av~lLg~~-~~~~---------~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe- 138 (240)
T 3l9t_A 70 EYIKKLAFLAYQSDVYQVRMYAVFLFGYL-SKDK---------EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK- 138 (240)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHT-TTSH---------HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHhc-cCcH---------HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH-
Confidence 44556666677777789999999988887 3111 34566666 5667889999999999999884 3332
Q ss_pred hHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009636 320 TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS 399 (530)
Q Consensus 320 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 399 (530)
..++.+..+..++ ++.+|+.|...+.-.+.. +.. ..--.-+++.|-.+..+++.-||+...|+|..++.
T Consensus 139 -------~~l~~~~~W~~d~-n~~VRR~Ase~~rpW~~~-~~~--k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK 207 (240)
T 3l9t_A 139 -------KALPIIDEWLKSS-NLHTRRAATEGLRIWTNR-PYF--KENPNEAIRRIADLKEDVSEYVRKSVGNALRDISK 207 (240)
T ss_dssp -------TTHHHHHHHHHCS-SHHHHHHHHHHTCSGGGS-TTT--TTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHT
T ss_pred -------HHHHHHHHHhcCC-CHHHHHHHHHhhHHHhcc-chh--hcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhh
Confidence 2577888999999 999999988776443321 000 00001245666667777889999999999999998
Q ss_pred CCCHHHHHHHHH
Q 009636 400 GGTHEQIKFLVI 411 (530)
Q Consensus 400 ~~~~~~~~~l~~ 411 (530)
. +|+.+..+++
T Consensus 208 ~-~Pd~V~~~~~ 218 (240)
T 3l9t_A 208 K-FPDLVKIELK 218 (240)
T ss_dssp T-CHHHHHHHHH
T ss_pred h-CHHHHHHHHH
Confidence 7 6776655544
No 116
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=95.98 E-value=0.32 Score=42.50 Aligned_cols=144 Identities=15% Similarity=0.042 Sum_probs=104.1
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHhhhC-CCchhhh
Q 009636 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK-LLYSPSDDVREQAVWALGNIAG-DSPRCRD 195 (530)
Q Consensus 118 v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-ll~~~~~~i~~~a~~~L~nl~~-~~~~~~~ 195 (530)
++....+.+++. .++|..|+..|+.+ .... .+++.+.. +...++..+++.+..+++.++. ..++.
T Consensus 73 ~~la~~L~~~~~-deVR~~Av~lLg~~-~~~~---------~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~-- 139 (240)
T 3l9t_A 73 KKLAFLAYQSDV-YQVRMYAVFLFGYL-SKDK---------EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK-- 139 (240)
T ss_dssp HHHHHHHHTCSS-HHHHHHHHHHHHHT-TTSH---------HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT--
T ss_pred HHHHHHHHhCcc-hHHHHHHHHHHHhc-cCcH---------HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH--
Confidence 455556666666 79999999998887 3111 23566666 5556889999999999999984 33321
Q ss_pred hHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh
Q 009636 196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN 275 (530)
Q Consensus 196 ~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~ 275 (530)
.++.+.... .+++..+++.|+..+.--+.. + ........++|.|..+..+++.-|+..+.|.|..++...+
T Consensus 140 ------~l~~~~~W~-~d~n~~VRR~Ase~~rpW~~~-~-~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P 210 (240)
T 3l9t_A 140 ------ALPIIDEWL-KSSNLHTRRAATEGLRIWTNR-P-YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP 210 (240)
T ss_dssp ------THHHHHHHH-HCSSHHHHHHHHHHTCSGGGS-T-TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred ------HHHHHHHHh-cCCCHHHHHHHHHhhHHHhcc-c-hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence 456666666 888999999999988665543 2 1223335578888888888889999999999999999988
Q ss_pred HHHHHHHH
Q 009636 276 DKIQAVIE 283 (530)
Q Consensus 276 ~~~~~~~~ 283 (530)
+.+..+++
T Consensus 211 d~V~~~~~ 218 (240)
T 3l9t_A 211 DLVKIELK 218 (240)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77665554
No 117
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=95.94 E-value=0.0095 Score=53.33 Aligned_cols=140 Identities=16% Similarity=0.134 Sum_probs=78.7
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhh
Q 009636 163 IFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVS 242 (530)
Q Consensus 163 ~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~ 242 (530)
.|..++.++++.++..++..+ . ...+..++ .+++..++..+...+ .
T Consensus 102 ~L~~ll~D~d~~VR~~aA~~l---~---------------~~~L~~L~-~D~d~~VR~~aA~~l---~------------ 147 (244)
T 1lrv_A 102 QLSALMFDEDREVRITVADRL---P---------------LEQLEQMA-ADRDYLVRAYVVQRI---P------------ 147 (244)
T ss_dssp GGGGTTTCSCHHHHHHHHHHS---C---------------TGGGGGGT-TCSSHHHHHHHHHHS---C------------
T ss_pred HHHHHHcCCCHHHHHHHHHhC---C---------------HHHHHHHH-cCCCHHHHHHHHHhc---C------------
Confidence 455556666666666655532 0 01222333 566666766666521 0
Q ss_pred chHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHH
Q 009636 243 PALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQC 322 (530)
Q Consensus 243 ~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~ 322 (530)
.+.+..++.++++.|+..++.. +. .+.+..++.++++.++..+...+
T Consensus 148 --~~~l~~l~~D~d~~VR~~aa~~---l~---------------~~ll~~ll~D~d~~VR~aaa~~l------------- 194 (244)
T 1lrv_A 148 --PGRLFRFMRDEDRQVRKLVAKR---LP---------------EESLGLMTQDPEPEVRRIVASRL------------- 194 (244)
T ss_dssp --GGGGGGTTTCSCHHHHHHHHHH---SC---------------GGGGGGSTTCSSHHHHHHHHHHC-------------
T ss_pred --HHHHHHHHcCCCHHHHHHHHHc---CC---------------HHHHHHHHcCCCHHHHHHHHHhC-------------
Confidence 0123345556667777666553 10 12344566777777777776542
Q ss_pred HhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHH
Q 009636 323 VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAI 394 (530)
Q Consensus 323 ~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL 394 (530)
..+.|..++.++ +..||..++..++ .+.|..+ .+.++.|+..+...|
T Consensus 195 -----~~~~L~~Ll~D~-d~~VR~~aa~~l~------------------~~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 195 -----RGDDLLELLHDP-DWTVRLAAVEHAS------------------LEALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp -----CGGGGGGGGGCS-SHHHHHHHHHHSC------------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred -----CHHHHHHHHcCC-CHHHHHHHHHcCC------------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence 123466667777 7888887776642 2344444 777888888876554
No 118
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=95.84 E-value=0.97 Score=50.71 Aligned_cols=301 Identities=8% Similarity=0.025 Sum_probs=168.5
Q ss_pred CHHHHHHhhcCC--ChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhc-CCCCHHHHHHHHHHHHHHhcC---
Q 009636 74 NLPVMVAGVWSN--DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLL-REDYPQLQFEAAWALTNIASG--- 147 (530)
Q Consensus 74 ~l~~l~~~l~s~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~-~~~~~~i~~~a~~~L~~l~~~--- 147 (530)
.+..++..+.++ +++.+.+|-..|.++-.. . .....+...|. .+.++.+|..|+..|.+....
T Consensus 12 ~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~--p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~ 80 (1204)
T 3a6p_A 12 QLVKAVTVMMDPNSTQRYRLEALKFCEEFKEK--C---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWN 80 (1204)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH--C---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHHHHhC--c---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcc
Confidence 355556555554 667788888888776432 1 12334444333 333489999999999987642
Q ss_pred --ChhhHHHHHhCCChHHHHHhhCC---CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHH
Q 009636 148 --TSEHTKVVIDHGAVPIFVKLLYS---PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNA 222 (530)
Q Consensus 148 --~~~~~~~~~~~g~i~~L~~ll~~---~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a 222 (530)
+++.+..+ +..++..+...... ....++...+.+++.|+...-..+. .++++.++.++.. +......+
T Consensus 81 ~l~~e~k~~I-r~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~W----p~ll~~L~~~~~~--~~~~~e~~ 153 (1204)
T 3a6p_A 81 GMSRLEKVYL-KNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHW----PDMLIELDTLSKQ--GETQTELV 153 (1204)
T ss_dssp GSCHHHHHHH-HHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTC----TTHHHHHHHHHHT--CHHHHHHH
T ss_pred cCCHHHHHHH-HHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccc----hHHHHHHHHHhcC--CHHHHHHH
Confidence 23333333 33444544443211 3578889899999988743211110 1356777777733 44557778
Q ss_pred HHHhhhhccCC---CCCChhh-----------hhchHHHHHHhhcC-------------------CChhHHHHHHHHHHH
Q 009636 223 TWTLSNFCRGK---PQPPFDQ-----------VSPALPALAHLIHS-------------------NDDEVLTDACWALSY 269 (530)
Q Consensus 223 ~~~L~~L~~~~---~~~~~~~-----------~~~~l~~L~~ll~~-------------------~d~~v~~~a~~~l~~ 269 (530)
+.+|..|+... ....... ...+++.+..++.. .+..+...++.++.+
T Consensus 154 L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~ 233 (1204)
T 3a6p_A 154 MFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAG 233 (1204)
T ss_dssp HHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHH
Confidence 88888887542 1111110 11333444444432 123466667777776
Q ss_pred hccCChHHHHHHHHhC--cHHHHHHhhCCCCchhHHHHHHHHhHhhcCCc--hhhHHHhh---cCchHHHHHhhc-----
Q 009636 270 LSDGTNDKIQAVIEAG--VFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD--MQTQCVIE---YQALPCLLNLLS----- 337 (530)
Q Consensus 270 l~~~~~~~~~~~~~~~--~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~--~~~~~~~~---~~~l~~L~~lL~----- 337 (530)
....-+- ..+.... +++.+..++. ++.++..|+.+|..++.... .....++. ...+..++..+.
T Consensus 234 ~l~Wi~~--~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~ 309 (1204)
T 3a6p_A 234 YIDWVSM--SHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGG 309 (1204)
T ss_dssp TTTTSCH--HHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCC
T ss_pred HHhccCH--HHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCC
Confidence 6554331 2233322 6777776665 46789999999999997442 21111221 111334444432
Q ss_pred --CCCchhHHHHHHHHHHHHhcCCHHHHHHHHH-----------hCcHHHHHHHHhcCchhHHHHHHHHHHHhhcC
Q 009636 338 --GNYKKSIKKEACWTVSNITAGNREQIQAVIE-----------ANIIGPLVALLENAEFDIKKEAAWAISNATSG 400 (530)
Q Consensus 338 --~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-----------~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 400 (530)
+..+.++.+..+.++..++. ....++. .++++.++.+..+++..+-..++.....+...
T Consensus 310 ~~~e~d~e~~k~l~~ll~~lg~----~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~ 381 (1204)
T 3a6p_A 310 GLVEKHYVFLKRLCQVLCALGN----QLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH 381 (1204)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHH----HHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred CCccHHHHHHHHHHHHHHHHHH----HHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence 11145677777777777752 1222221 24678888888888888888877766666553
No 119
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=95.47 E-value=0.95 Score=43.93 Aligned_cols=209 Identities=16% Similarity=0.093 Sum_probs=120.1
Q ss_pred CchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHh
Q 009636 214 PKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEF 293 (530)
Q Consensus 214 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~l 293 (530)
.+....+-|+..+..+....|. .....+..++.+.+..|..|+..++..|..+|.. +.+. .+.+.|+++
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP~----l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~-----kiaDvL~Ql 108 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFPE----LADSAINAQLDLCEDEDVSIRRQAIKELPQFATG--ENLP-----RVADILTQL 108 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCGG----GHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHH-----HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChh----hHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhh-----hHHHHHHHH
Confidence 3577888888888887776542 3456788889999999999999999999999977 3333 567889999
Q ss_pred hCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHhCcH
Q 009636 294 LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQAVIEANII 372 (530)
Q Consensus 294 L~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i 372 (530)
|+.+++.-...+-.+|..+...++. +.+..+..-+..+ ++.+|..+...|..-... ..+....-++.-++
T Consensus 109 Lqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~-~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~ 179 (507)
T 3u0r_A 109 LQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQG-EDIVRERAIKFLSTKLKTLPDEVLTKEVEELIL 179 (507)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHS-CHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHH
T ss_pred HhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHccc-chHHHHHHHHHHHHHHhhcchhhccHHHHHHHH
Confidence 9998877777666666666654442 2344444445456 778888877777553321 11111111122233
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHH---hccCCCChHHHHHHHHHHHHHHHhh
Q 009636 373 GPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLC---DLLVCPDPRIVTVCLEGLENILKVG 444 (530)
Q Consensus 373 ~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~---~lL~~~~~~~~~~al~~l~~ll~~~ 444 (530)
..+.++|.+-...=-.-....|..+-...++...+.|++ ++.... .-+...|++.+...+.++..-+.+.
T Consensus 180 ~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeLv~--ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~F 252 (507)
T 3u0r_A 180 TESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVE--LVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLF 252 (507)
T ss_dssp HHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHHHH--HHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHhccccHHHHHHHHHHHHhcccccCchHHHHHHH--HHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHh
Confidence 444445543322222223333333333334433333321 111111 1233456666666666666554433
No 120
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=95.27 E-value=1.7 Score=40.09 Aligned_cols=185 Identities=16% Similarity=0.117 Sum_probs=109.2
Q ss_pred HHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhc----CchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHH
Q 009636 288 PRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEY----QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQI 363 (530)
Q Consensus 288 ~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~----~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~ 363 (530)
..+.+++.. ....+-+++..+.-++. .+.....+.+. .++..+...+.....+..+.-++.+++|+..+. ...
T Consensus 106 ~~l~kil~W-P~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~-~g~ 182 (304)
T 3ebb_A 106 QILWKAINC-PEDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQ-AGQ 182 (304)
T ss_dssp HHHHHHHTS-CTTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSH-HHH
T ss_pred HHHHHHHcC-CHHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCc-hhH
Confidence 445555533 23455566666655543 22222222211 233344455544335667899999999998763 344
Q ss_pred HHHHH--hCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCC----CHHHHHHHHHcCChHHHHhccC-CCChHHHHHHHHH
Q 009636 364 QAVIE--ANIIGPLVALLENAEFDIKKEAAWAISNATSGG----THEQIKFLVIQGCIKPLCDLLV-CPDPRIVTVCLEG 436 (530)
Q Consensus 364 ~~l~~--~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~----~~~~~~~l~~~~~i~~L~~lL~-~~~~~~~~~al~~ 436 (530)
+.+.. ..+++.+...+.+.+..++..++..+.|++... +.+.... ++..+..++. ..|++....++-+
T Consensus 183 ~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~-----ll~~l~~il~~~~d~EalyR~LvA 257 (304)
T 3ebb_A 183 KLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQ-----CLSLISTILEVVQDLEATFRLLVA 257 (304)
T ss_dssp HHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHH-----HHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHH-----HHHHHHHHHhccCCHHHHHHHHHH
Confidence 44443 234555555555567899999999999998731 2222222 3344444443 4688999999999
Q ss_pred HHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcC-CCHHHHHHHHHHHH
Q 009636 437 LENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTH-DNAEIYEKSVKLLE 491 (530)
Q Consensus 437 l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~-~~~~v~~~a~~il~ 491 (530)
|++++..... ........|..+.+..+... ..+.|.+-|..+++
T Consensus 258 LGtL~~~~~~-----------~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~ 302 (304)
T 3ebb_A 258 LGTLISDDSN-----------AVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFILN 302 (304)
T ss_dssp HHHHHTTCHH-----------HHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHT
T ss_pred HHHHHhCChh-----------HHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 9999965332 34455555666666666544 67778888877764
No 121
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=95.13 E-value=0.9 Score=41.92 Aligned_cols=174 Identities=11% Similarity=0.056 Sum_probs=99.8
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCC----ChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCch
Q 009636 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHG----AVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPR 192 (530)
Q Consensus 118 v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g----~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~ 192 (530)
+..+.++++.+. +.+.-++.++.-++. .+.....+.+.. ++..++..+.. ..+..+-.++++++|+.....
T Consensus 105 l~~l~kil~WP~--~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~- 180 (304)
T 3ebb_A 105 LQILWKAINCPE--DIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQA- 180 (304)
T ss_dssp HHHHHHHHTSCT--TTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHH-
T ss_pred HHHHHHHHcCCH--HhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCch-
Confidence 345555554443 344445555544444 444444443321 22334445443 456678899999999986665
Q ss_pred hhhhHhhc--CChHHHHHhhcCCCchhHHHHHHHHhhhhccCC-CCCChhhhhchHHHHHHhhc-CCChhHHHHHHHHHH
Q 009636 193 CRDLVLSQ--GGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIH-SNDDEVLTDACWALS 268 (530)
Q Consensus 193 ~~~~i~~~--~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~l~~L~~ll~-~~d~~v~~~a~~~l~ 268 (530)
.++.+... .++..+...+ .+.+..++..+..++.|++... ..........++..+..++. ..|.+....++.+++
T Consensus 181 g~~~l~~~~~~il~~~~~~~-~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALG 259 (304)
T 3ebb_A 181 GQKLMMSQRESLMSHAIELK-SGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALG 259 (304)
T ss_dssp HHHHHHHTHHHHHHHHHGGG-SSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 55555432 1233333333 4567888888888888888653 11222233345555555564 358899999999999
Q ss_pred HhccCChHHHHHHHHhCcHHHHHHhhCC
Q 009636 269 YLSDGTNDKIQAVIEAGVFPRLAEFLMH 296 (530)
Q Consensus 269 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~ 296 (530)
++...+.+..+.....|+-..+-.+...
T Consensus 260 tL~~~~~~~~~lak~l~~~~~v~~~~~~ 287 (304)
T 3ebb_A 260 TLISDDSNAVQLAKSLGVDSQIKKYSSV 287 (304)
T ss_dssp HHHTTCHHHHHHHHHTTHHHHGGGGGGC
T ss_pred HHHhCChhHHHHHHHcCHHHHHHHHHhC
Confidence 9998766544433344555544445544
No 122
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=95.11 E-value=0.61 Score=41.32 Aligned_cols=142 Identities=14% Similarity=0.084 Sum_probs=97.2
Q ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHH-hCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCC-----HHHHHHH-----
Q 009636 341 KKSIKKEACWTVSNITAGNREQIQAVIE-ANIIGPLVALLENAEFDIKKEAAWAISNATSGGT-----HEQIKFL----- 409 (530)
Q Consensus 341 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~-----~~~~~~l----- 409 (530)
+.....++..+|..+.. +......++. .+.+..+...+.+.++.++..++..|.-++.... ......+
T Consensus 67 ~~~~~~~~l~CLkalmn-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~ 145 (233)
T 2f31_A 67 DSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE 145 (233)
T ss_dssp HHHHHHHHHHHHHHHTS-SHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhC-ChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHH
Confidence 34567778888887754 3455566664 5678888888988899999999888877765432 1112221
Q ss_pred -HHcCChHHHHhccC-CCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHH
Q 009636 410 -VIQGCIKPLCDLLV-CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSV 487 (530)
Q Consensus 410 -~~~~~i~~L~~lL~-~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~ 487 (530)
-+..-...+++.+. ..+.+....++..+..++...+.... --..+..|...|..+.+..+....++++..+..
T Consensus 146 ~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~-----R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~Qi~ 220 (233)
T 2f31_A 146 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF-----RVHIRSELMRLGLHQVLQELREIENEDMKVQLC 220 (233)
T ss_dssp HHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHH-----HHHHHHHHHHTTHHHHHHHHHHCCCHHHHHHHH
T ss_pred hCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHHHHHHCChHHHHHHHhccCCHHHHHHHH
Confidence 12234666777776 45667887888877777766543221 123677788999999999999999999866654
Q ss_pred H
Q 009636 488 K 488 (530)
Q Consensus 488 ~ 488 (530)
.
T Consensus 221 ~ 221 (233)
T 2f31_A 221 V 221 (233)
T ss_dssp H
T ss_pred H
Confidence 3
No 123
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=94.96 E-value=0.85 Score=40.34 Aligned_cols=141 Identities=13% Similarity=0.152 Sum_probs=90.1
Q ss_pred HHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcC----C------CCHHHHHHHHHHHHHHhcCChhhHHHHHh-CC
Q 009636 91 YECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLR----E------DYPQLQFEAAWALTNIASGTSEHTKVVID-HG 159 (530)
Q Consensus 91 ~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~----~------~~~~i~~~a~~~L~~l~~~~~~~~~~~~~-~g 159 (530)
..-+..|+..+...+..-++.+ ..+++..|+.+|.. + .+...+..++.||..+.. +......+.. .+
T Consensus 19 ~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn-~~~G~~~vl~~~~ 96 (233)
T 2f31_A 19 LSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEE 96 (233)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS-SHHHHHHHHTSSS
T ss_pred HHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC-ChHHHHHHHcCcH
Confidence 3445556655554322334555 34557777776653 1 125778999999999988 5666666665 56
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCc-hh-hhhHh----------hcCChHHHHHhhcCCCchhHHHHHHHHhh
Q 009636 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSP-RC-RDLVL----------SQGGLVPLLAQLNGQPKLSMLRNATWTLS 227 (530)
Q Consensus 160 ~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~-~~-~~~i~----------~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~ 227 (530)
.+..+...+.++++.++..++..|+.+|..+. .. ...++ +..-..+++..+..+.+.+.+.+++..+.
T Consensus 97 ~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN 176 (233)
T 2f31_A 97 GILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLIN 176 (233)
T ss_dssp HHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 78889999988999999999999998886543 11 22222 22345566776644555666666666666
Q ss_pred hhccCC
Q 009636 228 NFCRGK 233 (530)
Q Consensus 228 ~L~~~~ 233 (530)
.+....
T Consensus 177 ~li~~~ 182 (233)
T 2f31_A 177 ALITPA 182 (233)
T ss_dssp HHHTTC
T ss_pred HHHCCC
Confidence 666554
No 124
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=94.60 E-value=0.73 Score=44.19 Aligned_cols=162 Identities=16% Similarity=0.127 Sum_probs=107.8
Q ss_pred hhhHHHhhcCchHHHHHhhcC----------CCchhHHHHHHHHHHHHhcCCHHHHHHHHH-hCcHHHHHHHHhcCchhH
Q 009636 318 MQTQCVIEYQALPCLLNLLSG----------NYKKSIKKEACWTVSNITAGNREQIQAVIE-ANIIGPLVALLENAEFDI 386 (530)
Q Consensus 318 ~~~~~~~~~~~l~~L~~lL~~----------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v 386 (530)
...+.+. .+++..|+.+|.. ..+......+..||..+... ......++. ...+..|...+.+..+.+
T Consensus 101 sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~-~~G~~~vl~~~~~i~~l~~~L~s~~~~~ 178 (383)
T 3eg5_B 101 SWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNM 178 (383)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSS-HHHHHHHHTCSSHHHHHHHTCCTTSHHH
T ss_pred HHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcc-hhhHHHHHcChHHHHHHHHHhCCCchHH
Confidence 4444454 4556666666631 11346677788888888643 455555654 567899999999889999
Q ss_pred HHHHHHHHHHhhcCCC-----HHHHHHH------HHcCChHHHHhccCC-CChHHHHHHHHHHHHHHHhhhhhhhcCCCC
Q 009636 387 KKEAAWAISNATSGGT-----HEQIKFL------VIQGCIKPLCDLLVC-PDPRIVTVCLEGLENILKVGEAEKNLGNTD 454 (530)
Q Consensus 387 ~~~a~~aL~nl~~~~~-----~~~~~~l------~~~~~i~~L~~lL~~-~~~~~~~~al~~l~~ll~~~~~~~~~~~~~ 454 (530)
+..|+..|.-++.... ......+ -+..-...++..++. .+.+....++..+..++...+....
T Consensus 179 ~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~----- 253 (383)
T 3eg5_B 179 MIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF----- 253 (383)
T ss_dssp HHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHH-----
T ss_pred HHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHH-----
Confidence 9999999988776432 1111111 123447778888876 5677888888888877776543221
Q ss_pred chhhHHHhhhhccHHHHHHHhcCCCHHHHHHH
Q 009636 455 VNVFTQMIDDAEGLEKIESLQTHDNAEIYEKS 486 (530)
Q Consensus 455 ~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a 486 (530)
--..+..|..+|..+.+..+....++++....
T Consensus 254 R~~lR~ef~~~Gl~~il~~lr~~~~~~L~~Qi 285 (383)
T 3eg5_B 254 RVHIRSELMRLGLHQVLQELREIENEDMKVQL 285 (383)
T ss_dssp HHHHHHHHHHTTHHHHHHHHTTSCCHHHHHHH
T ss_pred HHHHHHHHHHCChHHHHHHHhcCCChhHHHHH
Confidence 12357778899999999999888888875443
No 125
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=94.56 E-value=2 Score=48.15 Aligned_cols=295 Identities=10% Similarity=0.058 Sum_probs=160.6
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhh--CCCCHHHHHHHHHHHHhhhCC-----Cchhhh
Q 009636 123 EFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL--YSPSDDVREQAVWALGNIAGD-----SPRCRD 195 (530)
Q Consensus 123 ~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll--~~~~~~i~~~a~~~L~nl~~~-----~~~~~~ 195 (530)
..++...++..+.+|-..|..+-. ++ .+...+...| .+.+..++..|+.+|.+.... +++.+.
T Consensus 19 ~~~~p~~~~~~r~~Ae~~L~~~~~-~p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~ 88 (1204)
T 3a6p_A 19 VMMDPNSTQRYRLEALKFCEEFKE-KC---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKV 88 (1204)
T ss_dssp HHHCTTCCHHHHHHHHHHHHHHHH-HC---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHH
T ss_pred HHhCCCCChHHHHHHHHHHHHHHh-Cc---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence 344332236778888877777654 22 1233333333 346788999999999887632 222222
Q ss_pred hHhhcCChHHHHHhhcC--CCchhHHHHHHHHhhhhccCC-CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhcc
Q 009636 196 LVLSQGGLVPLLAQLNG--QPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD 272 (530)
Q Consensus 196 ~i~~~~~i~~Ll~ll~~--~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~ 272 (530)
.+ +..++..+...... .....++..++.++..++... | .....+++.++.++.+ ++.....++.+|..+++
T Consensus 89 ~I-r~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p----~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~E 162 (1204)
T 3a6p_A 89 YL-KNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP----QHWPDMLIELDTLSKQ-GETQTELVMFILLRLAE 162 (1204)
T ss_dssp HH-HHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST----TTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc----ccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHH
Confidence 22 22233333322101 145778888888888888764 3 2346788888888866 45556677777777753
Q ss_pred C-------ChHHHHH---HHHh---CcHHHHHHhhCC-------------------CCchhHHHHHHHHhHhhcCCchhh
Q 009636 273 G-------TNDKIQA---VIEA---GVFPRLAEFLMH-------------------PSPSVLIPALRTVGNIVTGDDMQT 320 (530)
Q Consensus 273 ~-------~~~~~~~---~~~~---~~l~~L~~lL~~-------------------~~~~~~~~al~~L~nl~~~~~~~~ 320 (530)
. ...+... .+.. .++..+..++.. .+..+...++.++.+...--+.
T Consensus 163 ev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~-- 240 (1204)
T 3a6p_A 163 DVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSM-- 240 (1204)
T ss_dssp HHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH--
T ss_pred HHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCH--
Confidence 2 1111111 1111 223333333322 1234566677777766542221
Q ss_pred HHHhhcC--chHHHHHhhcCCCchhHHHHHHHHHHHHhcCC--HHHHHHHHH---hCcHHHHHHHHh--------cCchh
Q 009636 321 QCVIEYQ--ALPCLLNLLSGNYKKSIKKEACWTVSNITAGN--REQIQAVIE---ANIIGPLVALLE--------NAEFD 385 (530)
Q Consensus 321 ~~~~~~~--~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~--~~~~~~l~~---~~~i~~L~~ll~--------~~~~~ 385 (530)
..+.+.. +++.+..++. ++.++..|+.+|..++... ++....++. ...+..++..+. ..+.+
T Consensus 241 ~~i~~~~~~ll~~l~~~l~---~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e 317 (1204)
T 3a6p_A 241 SHITAENCKLLEILCLLLN---EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYV 317 (1204)
T ss_dssp HHHHTTTSHHHHHHHHGGG---CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHH
T ss_pred HHHHhccchHHHHHHHHcC---CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHH
Confidence 2233332 6777776665 5678999999999999732 333322322 111334444432 22456
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHH-----------cCChHHHHhccCCCChHHHHHHHHHHHHHHHh
Q 009636 386 IKKEAAWAISNATSGGTHEQIKFLVI-----------QGCIKPLCDLLVCPDPRIVTVCLEGLENILKV 443 (530)
Q Consensus 386 v~~~a~~aL~nl~~~~~~~~~~~l~~-----------~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~ 443 (530)
+.+..+..+..+.. .. ..++. .++++.+..+...++..+...++.....+++.
T Consensus 318 ~~k~l~~ll~~lg~----~l-~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~ 381 (1204)
T 3a6p_A 318 FLKRLCQVLCALGN----QL-CALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH 381 (1204)
T ss_dssp HHHHHHHHHHHHHH----HH-HHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHH----HH-HHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence 77777777777652 11 11221 13466677777777777777777666655544
No 126
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=94.54 E-value=1.4 Score=42.21 Aligned_cols=157 Identities=12% Similarity=0.114 Sum_probs=104.2
Q ss_pred HHHHHhhcCCCh-HHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcC----------CCCHHHHHHHHHHHHHH
Q 009636 76 PVMVAGVWSNDS-GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLR----------EDYPQLQFEAAWALTNI 144 (530)
Q Consensus 76 ~~l~~~l~s~~~-~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~----------~~~~~i~~~a~~~L~~l 144 (530)
..++..|+++.. ......+..|+.-+...+..-++.++ .+++..|+.+|.. ..+...+..++.||..+
T Consensus 69 ~~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkal 147 (383)
T 3eg5_B 69 MMYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF 147 (383)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH
Confidence 455666665432 22345677777666654333456666 4557888887752 11257889999999999
Q ss_pred hcCChhhHHHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCc-hh-hhhHh----------hcCChHHHHHhhc
Q 009636 145 ASGTSEHTKVVID-HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP-RC-RDLVL----------SQGGLVPLLAQLN 211 (530)
Q Consensus 145 ~~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~-~~-~~~i~----------~~~~i~~Ll~ll~ 211 (530)
.. +......++. ...+..|...+.+..+.++..++..|+.+|.... .. ...++ +..-+.+++..+.
T Consensus 148 mN-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~ 226 (383)
T 3eg5_B 148 MN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK 226 (383)
T ss_dssp TS-SHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTS
T ss_pred hc-chhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 87 5556666665 5678999999999999999999999999996553 21 22222 2334677788885
Q ss_pred CCCchhHHHHHHHHhhhhccCCC
Q 009636 212 GQPKLSMLRNATWTLSNFCRGKP 234 (530)
Q Consensus 212 ~~~~~~~~~~a~~~L~~L~~~~~ 234 (530)
...+.+...+++..+..+....+
T Consensus 227 ~~~~~e~~~~~m~lIN~li~~~~ 249 (383)
T 3eg5_B 227 SGTSIALKVGCLQLINALITPAE 249 (383)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCC
T ss_pred ccCcHHHHHHHHHHHHHHHcCCC
Confidence 44567777766666666666643
No 127
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=93.95 E-value=4.8 Score=44.33 Aligned_cols=172 Identities=13% Similarity=0.147 Sum_probs=109.6
Q ss_pred hHHHHHhhcC---CCchhHHHHHHHHhhhhc----cCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh
Q 009636 203 LVPLLAQLNG---QPKLSMLRNATWTLSNFC----RGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN 275 (530)
Q Consensus 203 i~~Ll~ll~~---~~~~~~~~~a~~~L~~L~----~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~ 275 (530)
+..+..++.. ..++.+...++.+++.|. ...+.........+...+...+...+.+-..-++.+|+|+...
T Consensus 393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p-- 470 (1056)
T 1lsh_A 393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP-- 470 (1056)
T ss_dssp HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG--
T ss_pred HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh--
Confidence 4445555522 124556666666665554 4433333334556666677777777888888899999998642
Q ss_pred HHHHHHHHhCcHHHHHHhhCC-----C--CchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcC-CCchhHHHH
Q 009636 276 DKIQAVIEAGVFPRLAEFLMH-----P--SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG-NYKKSIKKE 347 (530)
Q Consensus 276 ~~~~~~~~~~~l~~L~~lL~~-----~--~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~~v~~~ 347 (530)
..++.|.+++.. . ...++..|+++|.+++...+... -+.++.++.+ ..++++|..
T Consensus 471 ---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v--------~~il~~i~~n~~e~~EvRia 533 (1056)
T 1lsh_A 471 ---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKV--------QEIVLPIFLNVAIKSELRIR 533 (1056)
T ss_dssp ---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHH--------HHHHHHHHHCTTSCHHHHHH
T ss_pred ---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHH--------HHHHHHHhcCCCCChHHHHH
Confidence 345666666642 1 23577889999999986544332 3456677743 227899999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhc-CchhHHHHHHHHHHHhhcCCCH
Q 009636 348 ACWTVSNITAGNREQIQAVIEANIIGPLVALLEN-AEFDIKKEAAWAISNATSGGTH 403 (530)
Q Consensus 348 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~nl~~~~~~ 403 (530)
|+..|... .-+.. .+..+...+.. .+..|.......|.+++....+
T Consensus 534 A~~~Lm~t-~P~~~---------~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P 580 (1056)
T 1lsh_A 534 SCIVFFES-KPSVA---------LVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP 580 (1056)
T ss_dssp HHHHHHHT-CCCHH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHH-CcCHH---------HHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence 99888543 12222 44555666655 4788999999999999887665
No 128
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=93.39 E-value=3.3 Score=39.71 Aligned_cols=140 Identities=14% Similarity=0.085 Sum_probs=95.3
Q ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHH-hCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHH-----HHHHH-----
Q 009636 341 KKSIKKEACWTVSNITAGNREQIQAVIE-ANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHE-----QIKFL----- 409 (530)
Q Consensus 341 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~-----~~~~l----- 409 (530)
+.....++..||..+... ......++. .+.+..+...+.+..+.++..++..|..++....++ ....+
T Consensus 71 d~~~~~~~l~CLkalmN~-~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~ 149 (386)
T 2bnx_A 71 DSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE 149 (386)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCC-HHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHH
Confidence 346677888888887543 445555554 567888888888888999999988777776643211 11111
Q ss_pred -HHcCChHHHHhccC-CCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHH
Q 009636 410 -VIQGCIKPLCDLLV-CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKS 486 (530)
Q Consensus 410 -~~~~~i~~L~~lL~-~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a 486 (530)
-+..-...+++.+. ..+.+....++..+..++...+.... --.++..|..+|..+.|..+....++++....
T Consensus 150 ~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~-----R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Qi 223 (386)
T 2bnx_A 150 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF-----RVHIRSELMRLGLHQVLQELREIENEDMKVQL 223 (386)
T ss_dssp HHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHH-----HHHHHHHHHHTTHHHHHHHHTTCCCHHHHHHH
T ss_pred hCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHHHHHHCChHHHHHHHhccCChhHHHHH
Confidence 12234666777776 45667888888888877776554221 12367789999999999999988888886553
No 129
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=92.78 E-value=4.3 Score=38.73 Aligned_cols=235 Identities=14% Similarity=0.053 Sum_probs=113.2
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009636 152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (530)
Q Consensus 152 ~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~ 231 (530)
.+..++...+..|+.++.++++.-|+..-.+|.++-+.-...|..+.. .+-..+...+.......-....+.++..+..
T Consensus 122 ~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk-~innif~~fiye~e~~~GIaeLLeilgsIin 200 (403)
T 3fga_B 122 AKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIIN 200 (403)
T ss_dssp HTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred HHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHhcCcccCCCHHHHHHHHHHHHc
Confidence 334444556788999999999999999999998887555544444332 1223344444222222223344555555555
Q ss_pred CCCCC-ChhhhhchHHHHHHhhcCCCh-hHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHH
Q 009636 232 GKPQP-PFDQVSPALPALAHLIHSNDD-EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV 309 (530)
Q Consensus 232 ~~~~~-~~~~~~~~l~~L~~ll~~~d~-~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L 309 (530)
+-..+ ......-....|+.+-....- ..-.....|+......++.....++ ..|+..=-..+..-...-+.-+
T Consensus 201 Gfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~vi-----~~LLk~WP~tns~KevlFL~El 275 (403)
T 3fga_B 201 GFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVV-----MALLKYWPKTHSPKEVMFLNEL 275 (403)
T ss_dssp HCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHHH-----HHHHHTCCSSCHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHHH-----HHHHHhCCCCCcHHHHHHHHHH
Confidence 44222 122222233344444443321 1122233334333333333322211 1122111112222222233334
Q ss_pred hHhhcCCc-hhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH---hCcHHHHHHHH----h-
Q 009636 310 GNIVTGDD-MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIE---ANIIGPLVALL----E- 380 (530)
Q Consensus 310 ~nl~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~i~~L~~ll----~- 380 (530)
..+...-+ ...+. +...+...+...+.+. +..|.+.|+....| +.+..++. ..++|.+...+ .
T Consensus 276 e~iLe~~~~~~f~~-i~~~lf~~la~ci~S~-hfqVAErAL~~wnN------e~i~~li~~n~~~IlPii~p~L~~~~~~ 347 (403)
T 3fga_B 276 EEILDVIEPSEFVK-IMEPLFRQLAKCVSSP-HFQVAERALYYWNN------EYIMSLISDNAAKILPIMFPSLYRNSKT 347 (403)
T ss_dssp HHHHTTCCHHHHHH-HHHHHHHHHHHHHTCS-CHHHHHHHHGGGGC------HHHHHHHHTTHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHhCCHHHHHH-HHHHHHHHHHHHHCCC-CHHHHHHHHHHhcc------HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 44443322 22211 2224667777778887 77777776654321 22222222 12455554444 2
Q ss_pred cCchhHHHHHHHHHHHhhcC
Q 009636 381 NAEFDIKKEAAWAISNATSG 400 (530)
Q Consensus 381 ~~~~~v~~~a~~aL~nl~~~ 400 (530)
+.+..++..+..++.-+...
T Consensus 348 HWn~~v~~l~~~vlk~l~e~ 367 (403)
T 3fga_B 348 HWNKTIHGLIYNALKLFMEM 367 (403)
T ss_dssp CSCHHHHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHHHh
Confidence 23788998888888877653
No 130
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=92.58 E-value=12 Score=41.32 Aligned_cols=166 Identities=14% Similarity=0.132 Sum_probs=108.9
Q ss_pred hHHHHHhhCC----CCHHHHHHHHHHHHhhhC----CCchhhhhHhhcCChHHHHHhhc---CCCchhHHHHHHHHhhhh
Q 009636 161 VPIFVKLLYS----PSDDVREQAVWALGNIAG----DSPRCRDLVLSQGGLVPLLAQLN---GQPKLSMLRNATWTLSNF 229 (530)
Q Consensus 161 i~~L~~ll~~----~~~~i~~~a~~~L~nl~~----~~~~~~~~i~~~~~i~~Ll~ll~---~~~~~~~~~~a~~~L~~L 229 (530)
+..+..++.+ .++.+++.|+.+++.+.. ..+.|.. ..++.+.+.+. ...+.+-...++.+|.|+
T Consensus 393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~-----~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~ 467 (1056)
T 1lsh_A 393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPD-----ELLQPLHDLLSQSSDRAKEEEIVLALKALGNA 467 (1056)
T ss_dssp HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCG-----GGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCH-----HHHHHHHHHHHHHHhcCChHHHHHHHHHhhcc
Confidence 4555666655 467788888888887752 3222221 22444444432 344677778889999998
Q ss_pred ccCCCCCChhhhhchHHHHHHhhcC-------CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhh--CCCCch
Q 009636 230 CRGKPQPPFDQVSPALPALAHLIHS-------NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL--MHPSPS 300 (530)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~L~~ll~~-------~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL--~~~~~~ 300 (530)
-.. ..++.|.+++.. ....++..|+++|..+....+...+ +.++++. ...+++
T Consensus 468 g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~E 529 (1056)
T 1lsh_A 468 GQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSE 529 (1056)
T ss_dssp TCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHH
T ss_pred CCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCChH
Confidence 752 356777777642 1356888999999999876654333 5567777 345778
Q ss_pred hHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCC
Q 009636 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN 359 (530)
Q Consensus 301 ~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~ 359 (530)
+|..|+..|-.- ++.. ..+..+...+..+.+..|.....-.|.+++..+
T Consensus 530 vRiaA~~~Lm~t---~P~~-------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~ 578 (1056)
T 1lsh_A 530 LRIRSCIVFFES---KPSV-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSS 578 (1056)
T ss_dssp HHHHHHHHHHHT---CCCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHH---CcCH-------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcC
Confidence 888888877432 2221 235667777777657888888888899998754
No 131
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=92.53 E-value=4.8 Score=38.55 Aligned_cols=156 Identities=12% Similarity=0.126 Sum_probs=97.3
Q ss_pred HHHHhhcCCChH-HHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcC----C------CCHHHHHHHHHHHHHHh
Q 009636 77 VMVAGVWSNDSG-VQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLR----E------DYPQLQFEAAWALTNIA 145 (530)
Q Consensus 77 ~l~~~l~s~~~~-~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~----~------~~~~i~~~a~~~L~~l~ 145 (530)
.++..|.+.... .....+..|+..+...+...++.+. .+++..|+.+|.. . .+...+..++.||..+.
T Consensus 8 ~yv~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalm 86 (386)
T 2bnx_A 8 MYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM 86 (386)
T ss_dssp HHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccchHHHHHHHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh
Confidence 345555543222 1223455666555543223345554 4557777776642 1 12578899999999998
Q ss_pred cCChhhHHHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCc-hh-hhhHh----------hcCChHHHHHhhcC
Q 009636 146 SGTSEHTKVVID-HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP-RC-RDLVL----------SQGGLVPLLAQLNG 212 (530)
Q Consensus 146 ~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~-~~-~~~i~----------~~~~i~~Ll~ll~~ 212 (530)
. +......+.. .+++..+...+.++++.++..++..|+.+|.... .. ...++ +..-+.+++..+..
T Consensus 87 N-~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~ 165 (386)
T 2bnx_A 87 N-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS 165 (386)
T ss_dssp S-SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTST
T ss_pred C-CHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHc
Confidence 8 5555555554 5678999999988899999999999998886543 11 22221 22345567777755
Q ss_pred CCchhHHHHHHHHhhhhccCCC
Q 009636 213 QPKLSMLRNATWTLSNFCRGKP 234 (530)
Q Consensus 213 ~~~~~~~~~a~~~L~~L~~~~~ 234 (530)
+.+.+...+++..+..+....+
T Consensus 166 ~~~~e~~~a~m~lIN~lv~~~~ 187 (386)
T 2bnx_A 166 GTSIALKVGCLQLINALITPAE 187 (386)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCS
T ss_pred CChHHHHHHHHHHHHHHHCCCC
Confidence 5667777666666666666644
No 132
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=91.26 E-value=11 Score=36.69 Aligned_cols=237 Identities=15% Similarity=0.048 Sum_probs=120.2
Q ss_pred hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhh
Q 009636 150 EHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF 229 (530)
Q Consensus 150 ~~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L 229 (530)
...+..++..++..|+.++.++++.-|+..-.+|..|-+.-...|..+... +-..+.+.+.......-....+.+++.+
T Consensus 153 ~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~-i~nif~~fi~e~e~~nGIaeLLeilgSI 231 (449)
T 2npp_B 153 NIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYETEHHNGIAELLEILGSI 231 (449)
T ss_dssp TTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHH-HHHHHHHHHHTCSCCSCHHHHHHHHHHH
T ss_pred hhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcccCCCCCHHHHHHHHHHH
Confidence 333445556678889999999999999999999988876554455444332 3334445553333333444566666666
Q ss_pred ccCCCCC-ChhhhhchHHHHHHhhcCCChh-HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHH
Q 009636 230 CRGKPQP-PFDQVSPALPALAHLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALR 307 (530)
Q Consensus 230 ~~~~~~~-~~~~~~~~l~~L~~ll~~~d~~-v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~ 307 (530)
..+...+ ......-....|+.+.....-. .-.....|+......++.....+ +..|+..=-..+..-...-+.
T Consensus 232 inGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~WP~tns~KevlFL~ 306 (449)
T 2npp_B 232 INGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYWPKTHSPKEVMFLN 306 (449)
T ss_dssp HSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHTCCSSCHHHHHHHHH
T ss_pred HhccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHHH-----HHHHHHhCCCCCchHHHHHHH
Confidence 6664222 2222222334455555444311 12223334444333333332221 122222111122222222333
Q ss_pred HHhHhhcCCc-hhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH---hCcHHHHHHHHhc--
Q 009636 308 TVGNIVTGDD-MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIE---ANIIGPLVALLEN-- 381 (530)
Q Consensus 308 ~L~nl~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~i~~L~~ll~~-- 381 (530)
-+..+....+ ...+. +...+...+..++.+. +..|-+.|+....| +.+..++. ..++|.+...+..
T Consensus 307 eleeile~~~~~ef~~-i~~~lF~~la~ci~S~-hfqVAErAL~~w~N------~~i~~li~~n~~~IlPii~p~L~~~s 378 (449)
T 2npp_B 307 ELEEILDVIEPSEFVK-IMEPLFRQLAKCVSSP-HFQVAERALYYWNN------EYIMSLISDNAAKILPIMFPSLYRNS 378 (449)
T ss_dssp HHHHHHTTCCHHHHHH-HHHHHHHHHHHHHTCS-CHHHHHHHHGGGGC------HHHHHHHHTTHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHhCCHHHHHH-HHHHHHHHHHHHHcCC-CHHHHHHHHHHHCC------HHHHHHHHhchhhhHHhhHHHHHHHH
Confidence 4444443222 22222 2234667777888887 77787777644322 22222222 1255666665522
Q ss_pred ---CchhHHHHHHHHHHHhhcC
Q 009636 382 ---AEFDIKKEAAWAISNATSG 400 (530)
Q Consensus 382 ---~~~~v~~~a~~aL~nl~~~ 400 (530)
.+..|+..|..++.-+...
T Consensus 379 ~~HWn~~V~~la~~vlk~l~e~ 400 (449)
T 2npp_B 379 KTHWNKTIHGLIYNALKLFMEM 400 (449)
T ss_dssp TCCSSTTHHHHHHHHHHHHHTT
T ss_pred HHhcCHHHHHHHHHHHHHHHHH
Confidence 2677888888888766654
No 133
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=89.55 E-value=3.3 Score=37.58 Aligned_cols=134 Identities=14% Similarity=0.105 Sum_probs=87.2
Q ss_pred hhHHHHHHHHhHhhcCCchhhHHHhh--cCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH--hCcHHHH
Q 009636 300 SVLIPALRTVGNIVTGDDMQTQCVIE--YQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIE--ANIIGPL 375 (530)
Q Consensus 300 ~~~~~al~~L~nl~~~~~~~~~~~~~--~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~--~~~i~~L 375 (530)
.....|+..|--++..-.... .++. ..++..|+ +.... .+.++..|+.+|+.....+|..+..+.+ ..++..+
T Consensus 43 ~~le~aLD~L~ElSHDi~~G~-KI~~~ef~lL~nL~-~~~~~-~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~l 119 (315)
T 3qml_C 43 ARLEDSFDRIMEFAHDYKHGY-KIITHEFALLANLS-LNENL-PLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKI 119 (315)
T ss_dssp HHHHHHHHHHGGGTTSHHHHH-HHHHHHHHHHHHHH-HCTTS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHhhh-HHHhCcHHHHHHHH-hhccC-ChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHH
Confidence 345667777777765333332 3333 23344444 22333 6789999999999999999999988876 3456666
Q ss_pred HHHHhc-------CchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCC--ChHHHHHHHHHHHHHHH
Q 009636 376 VALLEN-------AEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP--DPRIVTVCLEGLENILK 442 (530)
Q Consensus 376 ~~ll~~-------~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~--~~~~~~~al~~l~~ll~ 442 (530)
+.-|.. ....+++.-+.+|.-|+.... .+ ....+..|..++... ++.++..++..+..++.
T Consensus 120 f~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~-~F-----~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~ 189 (315)
T 3qml_C 120 MAALSNLNDSNHRSSNILIKRYLSILNELPVTSE-DL-----PIYSTVVLQNVYERNNKDKQLQIKVLELISKILK 189 (315)
T ss_dssp HHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST-TC-------CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchhHHHHHHHHHHHHHHhcChH-hh-----hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHcc
Confidence 655433 234677777788888877531 11 134567777766655 88999999999988885
No 134
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=88.39 E-value=1.7 Score=34.54 Aligned_cols=76 Identities=9% Similarity=0.165 Sum_probs=53.8
Q ss_pred ChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhh-hccHHHHHHHhcCCC--------HHHHH
Q 009636 414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDD-AEGLEKIESLQTHDN--------AEIYE 484 (530)
Q Consensus 414 ~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~l~~l~~~~~--------~~v~~ 484 (530)
+++.|..-|..+++.+...+|.+|..++..+... |...+.. ...++.+.+.+..++ ..|+.
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~----------f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~ 119 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSE----------FRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRE 119 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHH----------HHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHH
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHH----------HHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHH
Confidence 5777888888888999999999999999776442 3433332 233444444444433 67999
Q ss_pred HHHHHHHHhCCCCCC
Q 009636 485 KSVKLLETYWLDDED 499 (530)
Q Consensus 485 ~a~~il~~~~~~~~~ 499 (530)
+|.++++-.|+++..
T Consensus 120 ~AkEl~~ll~d~~~~ 134 (140)
T 1vdy_A 120 TAHETISAIFSEENG 134 (140)
T ss_dssp HHHHHHHHHTCCSSC
T ss_pred HHHHHHHHHhCcCCC
Confidence 999999999986554
No 135
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=88.03 E-value=1.4 Score=35.64 Aligned_cols=74 Identities=8% Similarity=-0.107 Sum_probs=60.5
Q ss_pred cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCC------CChHHHHHHHHHHHHHHHhh
Q 009636 371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC------PDPRIVTVCLEGLENILKVG 444 (530)
Q Consensus 371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~------~~~~~~~~al~~l~~ll~~~ 444 (530)
++..|.+-+.+.++.++..|+..|-.++.++...+...+....++..|..++.. .++.|+..++..+...-...
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 128 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGL 128 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHh
Confidence 456777778889999999999999999998888877777788889999988863 56788988888877766543
No 136
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=87.39 E-value=1.9 Score=35.55 Aligned_cols=72 Identities=13% Similarity=0.184 Sum_probs=55.0
Q ss_pred ChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcC-CCHHHHHHHHHHHHH
Q 009636 414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTH-DNAEIYEKSVKLLET 492 (530)
Q Consensus 414 ~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~-~~~~v~~~a~~il~~ 492 (530)
++..|..-|...++.++..+|..|..+++.+.. .|...+.....++.+..+... .++.|++++..+|+.
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~----------~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~ 122 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGK----------IFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVE 122 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCH----------HHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhH----------HHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 455666777888999999999999999987533 255566666667777666544 789999999999998
Q ss_pred hCC
Q 009636 493 YWL 495 (530)
Q Consensus 493 ~~~ 495 (530)
|-.
T Consensus 123 W~~ 125 (163)
T 1x5b_A 123 WSE 125 (163)
T ss_dssp HHH
T ss_pred HHH
Confidence 854
No 137
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=86.83 E-value=2.4 Score=34.24 Aligned_cols=71 Identities=8% Similarity=-0.098 Sum_probs=58.0
Q ss_pred cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCC------CChHHHHHHHHHHHHHH
Q 009636 371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC------PDPRIVTVCLEGLENIL 441 (530)
Q Consensus 371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~------~~~~~~~~al~~l~~ll 441 (530)
++..|.+-+.+.++.++..|+..|-.++.++...+...+.+..++..|..++.. .++.|+..++..+...-
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 456677778889999999999999999999887777887888899999998864 36788888777666544
No 138
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=86.77 E-value=7.9 Score=35.14 Aligned_cols=149 Identities=12% Similarity=0.106 Sum_probs=94.2
Q ss_pred HHHHHHhhcCC------ChhHHHHHHHHHHHhccCChHHHHHHH-HhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCc
Q 009636 245 LPALAHLIHSN------DDEVLTDACWALSYLSDGTNDKIQAVI-EAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD 317 (530)
Q Consensus 245 l~~L~~ll~~~------d~~v~~~a~~~l~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~ 317 (530)
+..+..++.+. |.+....++..|..++..-....+.+. +..++..|+ +.....+.+++.|.++|+...+.++
T Consensus 24 F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP 102 (315)
T 3qml_C 24 FKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNP 102 (315)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCH
Confidence 33444455544 445677788888888766544444333 334444444 3344566789999999999999999
Q ss_pred hhhHHHhhc--CchHHHHHhhcC----C--CchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC--chhHH
Q 009636 318 MQTQCVIEY--QALPCLLNLLSG----N--YKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIK 387 (530)
Q Consensus 318 ~~~~~~~~~--~~l~~L~~lL~~----~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~ 387 (530)
.....+.+. .++..+..-|.. . ....+.+.-+.+|.-|...+.. + ....+..|.+++... +..+|
T Consensus 103 ~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~----F-~~~~m~~L~~ly~~~~~d~~~k 177 (315)
T 3qml_C 103 PVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSED----L-PIYSTVVLQNVYERNNKDKQLQ 177 (315)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT----C---CCHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh----h-hhccHHHHHHHHccCCCCHHHH
Confidence 887777642 444444444322 1 1335667777777777765421 1 134567777777777 88999
Q ss_pred HHHHHHHHHhhc
Q 009636 388 KEAAWAISNATS 399 (530)
Q Consensus 388 ~~a~~aL~nl~~ 399 (530)
..++..+..+..
T Consensus 178 ~Kvl~li~d~f~ 189 (315)
T 3qml_C 178 IKVLELISKILK 189 (315)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcc
Confidence 999988887763
No 139
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=86.30 E-value=1.7 Score=34.74 Aligned_cols=72 Identities=13% Similarity=0.212 Sum_probs=54.9
Q ss_pred ChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009636 414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETY 493 (530)
Q Consensus 414 ~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~ 493 (530)
++..|..-|...++.++..++..|..+++.+.. .|...+.....++.+..+....++.|++++..+++.+
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~----------~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W 112 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGK----------IFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEW 112 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH----------HHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCH----------HHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 456666677788999999999999988876533 2455555566667777776678999999999999987
Q ss_pred CC
Q 009636 494 WL 495 (530)
Q Consensus 494 ~~ 495 (530)
-.
T Consensus 113 ~~ 114 (140)
T 3ldz_A 113 TD 114 (140)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 140
>2p8q_B Snurportin-1; heat repeat, IBB-domain, importin, karyopherin, transport; 2.35A {Homo sapiens} PDB: 2q5d_C 3lww_B
Probab=85.33 E-value=0.7 Score=27.43 Aligned_cols=38 Identities=29% Similarity=0.549 Sum_probs=26.0
Q ss_pred HhhhhcCCC-CCchHHhhhhhhHHHHHHHHhhhHHHHhhhh
Q 009636 11 SRRNKYKVA-VDADEGRRRREDNMVEIRKNKREESLQKKRR 50 (530)
Q Consensus 11 ~~~~~~k~~-~~~~e~~~~r~~~~~~lRk~~r~~~l~~~R~ 50 (530)
+|...||+. ...++.. ||.+ -.+.-|++|-+.++..|+
T Consensus 2 PR~sqYK~k~~~~~q~~-rRr~-~L~~QK~~R~D~~nhaR~ 40 (40)
T 2p8q_B 2 PRLSQYKSKYSSLEQSE-RRRR-LLELQKSKRLDYVNHARR 40 (40)
T ss_dssp CCGGGTTCCCCSCSTTH-HHHH-HHHHHHHHHHHHHHTTTC
T ss_pred ccHHhhccccchhhHHH-HHHH-HHHHHHHHHHHHHHHhcC
Confidence 477789984 4444444 4444 578888899888887764
No 141
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=85.22 E-value=3.2 Score=34.45 Aligned_cols=72 Identities=15% Similarity=0.198 Sum_probs=56.3
Q ss_pred ChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhc------CCCHHHHHHHH
Q 009636 414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQT------HDNAEIYEKSV 487 (530)
Q Consensus 414 ~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~------~~~~~v~~~a~ 487 (530)
++..|..-+.+.++.++..+|..|..+++.+.. .|...+.....++.|..+.. ..+..|++++.
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~----------~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil 120 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGR----------RFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVI 120 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHH----------HHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCH----------HHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHH
Confidence 456677777889999999999999999987543 25666766777788877754 35789999999
Q ss_pred HHHHHhCC
Q 009636 488 KLLETYWL 495 (530)
Q Consensus 488 ~il~~~~~ 495 (530)
.+|+.|-.
T Consensus 121 ~li~~W~~ 128 (171)
T 1juq_A 121 ELLYSWTM 128 (171)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998754
No 142
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=85.15 E-value=20 Score=31.88 Aligned_cols=99 Identities=9% Similarity=0.080 Sum_probs=69.5
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 009636 77 VMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVI 156 (530)
Q Consensus 77 ~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~ 156 (530)
.+++..+....+.+...+...+.++... ++.. . ..+++.++.+..+.+ .++|...+..+...+....+....
T Consensus 19 ~lln~A~~~~~~~kl~~L~qa~el~~~~-dp~l---l-~~~l~~il~~~~~~~-~~vrk~~~~Fi~e~~~~k~~l~~~-- 90 (257)
T 3gs3_A 19 DWCNELVIASPSTKCELLAKVQETVLGS-CAEL---A-EEFLESVLSLAHDSN-MEVRKQVVAFVEQVCKVKVELLPH-- 90 (257)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHTTT-TGGG---H-HHHHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHHH--
T ss_pred HHHHHhhhcCcHHHHHHHHHHHHHHHcc-CHhH---H-HHHHHHHHHhccCCh-HHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 3344333423368889999999977664 2321 1 335777888776666 899999999998888654444333
Q ss_pred hCCChHHHHHhhCCCCHHHHHHHHHHHHhh
Q 009636 157 DHGAVPIFVKLLYSPSDDVREQAVWALGNI 186 (530)
Q Consensus 157 ~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl 186 (530)
.++.|..++.+.++.+...++.+.+++
T Consensus 91 ---~l~~L~~Ll~d~d~~V~K~~I~~~~~i 117 (257)
T 3gs3_A 91 ---VINVVSMLLRDNSAQVIKRVIQACGSI 117 (257)
T ss_dssp ---HHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 467888888888899998888877776
No 143
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=84.16 E-value=3.3 Score=33.45 Aligned_cols=72 Identities=15% Similarity=0.199 Sum_probs=56.6
Q ss_pred ChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhc------CCCHHHHHHHH
Q 009636 414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQT------HDNAEIYEKSV 487 (530)
Q Consensus 414 ~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~------~~~~~v~~~a~ 487 (530)
++..|..-+.+.++.++..++..|..+++.+.. .|...+....+++.|..+.. ..+++|++++.
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~----------~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil 118 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGK----------RFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKIL 118 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCH----------HHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCH----------HHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHH
Confidence 456666777789999999999999999877643 25666777777788877754 47899999999
Q ss_pred HHHHHhCC
Q 009636 488 KLLETYWL 495 (530)
Q Consensus 488 ~il~~~~~ 495 (530)
.+++.|-.
T Consensus 119 ~li~~W~~ 126 (149)
T 3g2s_A 119 ELLYSWTV 126 (149)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998854
No 144
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=84.15 E-value=3.4 Score=33.39 Aligned_cols=73 Identities=11% Similarity=0.105 Sum_probs=57.0
Q ss_pred ChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhc------CCCHHHHHHHH
Q 009636 414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQT------HDNAEIYEKSV 487 (530)
Q Consensus 414 ~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~------~~~~~v~~~a~ 487 (530)
++..|..-|.+.++.++..|+..|..+++.+.. .|...+.....++.|..+.. ..+++|++++.
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~----------~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil 108 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGE----------KFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVI 108 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH----------HHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCH----------HHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHH
Confidence 456666777889999999999999999987533 26666777777888877754 25899999999
Q ss_pred HHHHHhCCC
Q 009636 488 KLLETYWLD 496 (530)
Q Consensus 488 ~il~~~~~~ 496 (530)
.+++.|-..
T Consensus 109 ~li~~W~~~ 117 (148)
T 1mhq_A 109 EILFSWTVW 117 (148)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988543
No 145
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=83.93 E-value=7.9 Score=36.76 Aligned_cols=118 Identities=18% Similarity=0.149 Sum_probs=81.3
Q ss_pred hCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhh
Q 009636 369 ANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEK 448 (530)
Q Consensus 369 ~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~ 448 (530)
.++++.++.+..+.+.++|+.++..|...+.. ..+... .+++.|..+|.++++.++..++.+..++....-..-
T Consensus 62 ~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~-~~el~~-----~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i 135 (386)
T 3o2t_A 62 DNFLDEIIAFQADKSIEVRKFVIGFIEEACKR-DIELLL-----KLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWM 135 (386)
T ss_dssp GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-CGGGHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-HHHHHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 36889999988888999999999999888763 223322 357788888888999999888888887764322211
Q ss_pred hcCCCC---chhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009636 449 NLGNTD---VNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW 494 (530)
Q Consensus 449 ~~~~~~---~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~ 494 (530)
...... .+.....+.. ..+.|..+..+.+..|+-.|.+.++++.
T Consensus 136 ~~~~~~~~~~e~~W~~m~~--lK~~Il~~~ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 136 VKSRVISELQEACWDMVSA--MAGDIILLLDSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp HHC-CCCHHHHHHHHHHHH--HHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred hcCCCcchhHHHHHHHHHH--HHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 110100 1233444432 3456777788999999999999999853
No 146
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=83.89 E-value=2 Score=34.37 Aligned_cols=74 Identities=5% Similarity=-0.024 Sum_probs=58.4
Q ss_pred cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhh
Q 009636 371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG 444 (530)
Q Consensus 371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~ 444 (530)
++..+.+-+.+.++.++..|+..|-.++.++.......+.+..++..|..++...++.|...++..+...-...
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f 116 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEF 116 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHh
Confidence 45667777888899999999999999999887777666666677888888887778889999888877665443
No 147
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=83.39 E-value=2.6 Score=35.01 Aligned_cols=71 Identities=8% Similarity=-0.053 Sum_probs=56.7
Q ss_pred cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCC------CChHHHHHHHHHHHHHH
Q 009636 371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC------PDPRIVTVCLEGLENIL 441 (530)
Q Consensus 371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~------~~~~~~~~al~~l~~ll 441 (530)
++..|.+-+.+.++.++..|+..|-.++.++...+...+.+..++..|+.++.. .++.|+..++..+...-
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 456777788889999999999999999998777777777778888888888863 35678888877766544
No 148
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=82.91 E-value=33 Score=32.56 Aligned_cols=88 Identities=10% Similarity=0.126 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHh
Q 009636 88 GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKL 167 (530)
Q Consensus 88 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l 167 (530)
+.+...+..+++++-.. ++. .-..+++.++++-.+.+ .+++...+..|...+....+.... +++.|..+
T Consensus 40 ~~Kl~~L~q~~EL~l~~-dps----Ll~~fl~~il~f~~d~~-~~vRk~~a~FieEa~~~~~el~~~-----~l~~L~~L 108 (386)
T 3o2t_A 40 DSKITVLKQVQELIINK-DPT----LLDNFLDEIIAFQADKS-IEVRKFVIGFIEEACKRDIELLLK-----LIANLNML 108 (386)
T ss_dssp THHHHHHHHHHHHHHTT-CGG----GGGGGHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc-CHH----HHHHHHHHHHHhccCCc-HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
Confidence 57888999999976543 332 22568999999988887 899999999999888755544332 46788888
Q ss_pred hCCCCHHHHHHHHHHHHhh
Q 009636 168 LYSPSDDVREQAVWALGNI 186 (530)
Q Consensus 168 l~~~~~~i~~~a~~~L~nl 186 (530)
+.+.++.+...++.+.+++
T Consensus 109 L~d~d~~V~K~~I~~~tsl 127 (386)
T 3o2t_A 109 LRDENVNVVKKAILTMTQL 127 (386)
T ss_dssp HTCSSHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHH
Confidence 8888899998888888776
No 149
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=81.72 E-value=4.5 Score=43.99 Aligned_cols=186 Identities=13% Similarity=0.059 Sum_probs=113.9
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcC---CCchhHHHHHHHHhhh--hccCCCC
Q 009636 161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG---QPKLSMLRNATWTLSN--FCRGKPQ 235 (530)
Q Consensus 161 i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~---~~~~~~~~~a~~~L~~--L~~~~~~ 235 (530)
+.-|+.+--+..++++..|-.+|......-+..+.. +++.+++.|.. ..+.+-.+.|+++|.. +... -.
T Consensus 135 l~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~-----iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~-~~ 208 (997)
T 1vsy_5 135 LVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGV-----VINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRK-LM 208 (997)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHH-----HHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHH-GG
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHH-----HHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhH-Hh
Confidence 566777777888999999999999988766655555 57777877754 5566777788887762 2111 12
Q ss_pred CChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC--------------------Ch----HHHHHH----------
Q 009636 236 PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG--------------------TN----DKIQAV---------- 281 (530)
Q Consensus 236 ~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~--------------------~~----~~~~~~---------- 281 (530)
........+++.|+.....++++++..+-.+...+... ++ ..+...
T Consensus 209 ~d~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~r~~ 288 (997)
T 1vsy_5 209 TDYKDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKKKREY 288 (997)
T ss_dssp GCHHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTHHHHH
T ss_pred cChHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 23455567777777776666666555444332222210 00 001100
Q ss_pred HH---hCcHHHHHHhh-CCCC--chhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHH
Q 009636 282 IE---AGVFPRLAEFL-MHPS--PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI 355 (530)
Q Consensus 282 ~~---~~~l~~L~~lL-~~~~--~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl 355 (530)
.. .++...++.+. .... |.....++..+.++....+. .....++..+++.+.++ ++.+|+.|..++..+
T Consensus 289 ~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~----~~~~~~v~~~~~~l~~d-hp~~R~~a~~~l~~i 363 (997)
T 1vsy_5 289 YLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLES----KPDKRAVFSIISQISTK-HPEIIHLVVKSLLST 363 (997)
T ss_dssp HHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSC----CCCHHHHHHHHGGGGGC-CHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCC----CCCHHHHHHHHHhhcCC-CHHHHHHHHHHHHHH
Confidence 00 13344444555 3345 88888888886666643331 12334677788888888 999999998887665
Q ss_pred hc
Q 009636 356 TA 357 (530)
Q Consensus 356 ~~ 357 (530)
..
T Consensus 364 l~ 365 (997)
T 1vsy_5 364 CN 365 (997)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 150
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=80.41 E-value=17 Score=32.35 Aligned_cols=117 Identities=13% Similarity=0.145 Sum_probs=79.2
Q ss_pred CcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhh
Q 009636 370 NIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKN 449 (530)
Q Consensus 370 ~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~ 449 (530)
++++.++.+..+.+.++|+..+..+...+.. .++... .+++.|..++.++++.+...++.+...+....-..-.
T Consensus 53 ~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~-k~~l~~-----~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~ 126 (257)
T 3gs3_A 53 EFLESVLSLAHDSNMEVRKQVVAFVEQVCKV-KVELLP-----HVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLC 126 (257)
T ss_dssp HHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-CGGGHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHHHHH-HHHHHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566777766667899999999999888753 223222 3577888889999999999999888888654322211
Q ss_pred cCCCC---chhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009636 450 LGNTD---VNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW 494 (530)
Q Consensus 450 ~~~~~---~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~ 494 (530)
..... .+.....+. ...+.|..+..+.+..|+-.|.+.++++.
T Consensus 127 ~~~~~~~~~~~~W~~m~--~lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 127 SLMEPGDSAEQAWNILS--LIKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp TSSSCCHHHHHHHHHHH--HHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred cCCCCcchHHHHHHHHH--HHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 11000 123344442 23466777788999999999999999854
No 151
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=80.13 E-value=3.3 Score=34.10 Aligned_cols=71 Identities=3% Similarity=-0.040 Sum_probs=55.6
Q ss_pred cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCC-CChHHHHHHHHHHHHHH
Q 009636 371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC-PDPRIVTVCLEGLENIL 441 (530)
Q Consensus 371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~-~~~~~~~~al~~l~~ll 441 (530)
++..|.+-|.+.++.++..|+..|-.++.++...+...+....+++.|..++.. .++.|+..++..+...-
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 455677778889999999999999999998877777777777788888787764 56788888777665444
No 152
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=76.61 E-value=17 Score=34.42 Aligned_cols=81 Identities=16% Similarity=0.039 Sum_probs=51.2
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009636 152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (530)
Q Consensus 152 ~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~ 231 (530)
.+..++...+..|+.++.++++.-|+....+|..+-+.-...|..+.+ .+-..+.+.+.......-...+++++..+..
T Consensus 167 ~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk-~i~nif~~fiye~e~~~GIaeLLeilgsIIn 245 (392)
T 2jak_A 167 AKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIIN 245 (392)
T ss_dssp HTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHH-HHHHHHHHHHTSSCCCSCHHHHHHHHHHHHH
T ss_pred hhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhccCCCCCHHHHHHHHHHHHh
Confidence 334445567888999999999999999999998886554445544332 2334455555333333444456666666666
Q ss_pred CC
Q 009636 232 GK 233 (530)
Q Consensus 232 ~~ 233 (530)
+.
T Consensus 246 gf 247 (392)
T 2jak_A 246 GF 247 (392)
T ss_dssp TC
T ss_pred cc
Confidence 54
No 153
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=74.77 E-value=8.6 Score=33.58 Aligned_cols=71 Identities=13% Similarity=0.281 Sum_probs=53.4
Q ss_pred ChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHH-hcCCCHHHHHHHHHHHHH
Q 009636 414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESL-QTHDNAEIYEKSVKLLET 492 (530)
Q Consensus 414 ~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l-~~~~~~~v~~~a~~il~~ 492 (530)
++..|..-|.+.++.++..||..|..+++.+.. .|...+.....++.|..+ ....+++|++++..+|+.
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~----------~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~ 115 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQ----------TVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQA 115 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCH----------HHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcch----------HHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 466677777889999999999999999877643 245555555566666555 356789999999999998
Q ss_pred hC
Q 009636 493 YW 494 (530)
Q Consensus 493 ~~ 494 (530)
+-
T Consensus 116 W~ 117 (226)
T 3zyq_A 116 WA 117 (226)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 154
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=72.62 E-value=11 Score=32.78 Aligned_cols=72 Identities=19% Similarity=0.259 Sum_probs=52.5
Q ss_pred ChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHH-hcCCCHHHHHHHHHHHHH
Q 009636 414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESL-QTHDNAEIYEKSVKLLET 492 (530)
Q Consensus 414 ~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l-~~~~~~~v~~~a~~il~~ 492 (530)
++..|..-|.+.++.++..+|..|..+++.+.. .|...+.....++.|..+ ....+++|++++..+++.
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~----------~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~ 112 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGA----------PVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQT 112 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHH----------HHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCH----------HHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 455666677889999999999999999987533 144445555556665555 346789999999999998
Q ss_pred hCC
Q 009636 493 YWL 495 (530)
Q Consensus 493 ~~~ 495 (530)
+-.
T Consensus 113 W~~ 115 (220)
T 1dvp_A 113 WAY 115 (220)
T ss_dssp HHH
T ss_pred HHH
Confidence 743
No 155
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=71.27 E-value=2.4 Score=37.10 Aligned_cols=74 Identities=9% Similarity=0.063 Sum_probs=53.7
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 009636 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS 146 (530)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~ 146 (530)
+++..|.+.|++.++.+++.|+..|..++.+.+.....++....++..|+.+++...++.++..++..+...+.
T Consensus 45 ~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 45 YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 46778888888999999999999888887664333344454556677777777654447888888887777664
No 156
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=70.27 E-value=6.9 Score=30.66 Aligned_cols=94 Identities=19% Similarity=0.138 Sum_probs=61.0
Q ss_pred cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhhhhhhhc
Q 009636 371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNL 450 (530)
Q Consensus 371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~~~~~~~ 450 (530)
++|.|+..|++.+..+...++..|..+-. . +++.+...|.++|..=.. ++|..++...+..
T Consensus 32 ~lp~LL~WLQD~NWPvA~~i~~~L~~~~~----~---------l~p~I~~vl~s~D~~W~y---wil~~lv~~~~~~--- 92 (134)
T 3ut4_A 32 IIFDLLKWLQDYNWPIAKDILPVVVLHQS----I---------AMPHILTILQGNDIMWKY---WVIKLMIPYLIYP--- 92 (134)
T ss_dssp HHHHHHGGGSCTTSTTHHHHHHHHHHTHH----H---------HHHHHHHHHHSSCHHHHH---HHHHHHGGGCCHH---
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHccH----h---------hHHHHHHHHHcCChHHHH---HHHHHHHHcCCHH---
Confidence 67899999999999999988888876421 2 344555566777765433 3444444332221
Q ss_pred CCCCchhhHHHhhhhccHHHHHHHhcC-----CCHHHHHHHHHHHHHhCC
Q 009636 451 GNTDVNVFTQMIDDAEGLEKIESLQTH-----DNAEIYEKSVKLLETYWL 495 (530)
Q Consensus 451 ~~~~~~~~~~~l~~~~~~~~l~~l~~~-----~~~~v~~~a~~il~~~~~ 495 (530)
....+ ...|+.+..+ ..+++.+.|..|+++||.
T Consensus 93 -------~~~~l-----~~eL~rl~~~pt~~E~~eev~e~A~~iL~~~~~ 130 (134)
T 3ut4_A 93 -------NKQLV-----KSELERLSSLEIINEDIREIVNLSKDYLHFYYP 130 (134)
T ss_dssp -------HHHHH-----HHHHHHHHTCCCSSGGGHHHHHHHHHHHHHHC-
T ss_pred -------HHHHH-----HHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcc
Confidence 12222 3556666655 577899999999999987
No 157
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=70.22 E-value=14 Score=30.09 Aligned_cols=72 Identities=14% Similarity=0.178 Sum_probs=52.1
Q ss_pred ChHHHHhccC-CCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHH-HHHHh---cCCCHHHHHHHHH
Q 009636 414 CIKPLCDLLV-CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEK-IESLQ---THDNAEIYEKSVK 488 (530)
Q Consensus 414 ~i~~L~~lL~-~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-l~~l~---~~~~~~v~~~a~~ 488 (530)
++..|..-|. ..++.++..|+..|..+++.+.. .|...+.....++. |..+. ..+...|++++..
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~----------~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~ 123 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGH----------RFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLN 123 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCH----------HHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCH----------HHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHH
Confidence 4556666676 57889999999999999887632 25666666666776 55544 2456799999999
Q ss_pred HHHHhCC
Q 009636 489 LLETYWL 495 (530)
Q Consensus 489 il~~~~~ 495 (530)
+++.|-.
T Consensus 124 li~~W~~ 130 (157)
T 1elk_A 124 LIQSWAD 130 (157)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998754
No 158
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=69.41 E-value=79 Score=30.07 Aligned_cols=234 Identities=17% Similarity=0.125 Sum_probs=117.8
Q ss_pred HHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHhhhCCC
Q 009636 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSP-SDDVREQAVWALGNIAGDS 190 (530)
Q Consensus 112 ~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~i~~~a~~~L~nl~~~~ 190 (530)
.++...+-.|+.+++++| +.-|...-.+|..+-......+..+.. .+-..+.+++... ...-....+.+++.+..+-
T Consensus 125 ~id~~Fi~~Ll~lfdSeD-prER~~LktiLhrIY~kf~~~R~~Irk-~innif~~fiye~e~~~GIaeLLeilgsIinGf 202 (403)
T 3fga_B 125 YIDQKFVLQLLELFDSED-PRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIINGF 202 (403)
T ss_dssp TSCHHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHC
T ss_pred hcCHHHHHHHHHHcCCCC-hHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHhcCcccCCCHHHHHHHHHHHHccc
Confidence 344456778999999999 888888888888877655555544432 2234455554331 1111223556666665322
Q ss_pred -chhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHH
Q 009636 191 -PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSY 269 (530)
Q Consensus 191 -~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~ 269 (530)
...+..- ..-....|+.+.+...-.........|+..++..++.. ...++..|++.=-..++.-..-.+.-+..
T Consensus 203 a~PLkeeh-k~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L----~~~vi~~LLk~WP~tns~KevlFL~Ele~ 277 (403)
T 3fga_B 203 ALPLKEEH-KIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTL----TEPVVMALLKYWPKTHSPKEVMFLNELEE 277 (403)
T ss_dssp CSSCCHHH-HHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGG----HHHHHHHHHHTCCSSCHHHHHHHHHHHHH
T ss_pred CCCchHHH-HHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchh----HHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Confidence 1111110 00012233333322222333455566666666554321 12223333332223343333334444444
Q ss_pred hccC-ChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhh---cCchHHHHHhh----cCCCc
Q 009636 270 LSDG-TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIE---YQALPCLLNLL----SGNYK 341 (530)
Q Consensus 270 l~~~-~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~---~~~l~~L~~lL----~~~~~ 341 (530)
+... ++...+.+.. .++..+...+.+.+..|.+.|+....| +... .++. ..++|.+...| ...=+
T Consensus 278 iLe~~~~~~f~~i~~-~lf~~la~ci~S~hfqVAErAL~~wnN-----e~i~-~li~~n~~~IlPii~p~L~~~~~~HWn 350 (403)
T 3fga_B 278 ILDVIEPSEFVKIME-PLFRQLAKCVSSPHFQVAERALYYWNN-----EYIM-SLISDNAAKILPIMFPSLYRNSKTHWN 350 (403)
T ss_dssp HHTTCCHHHHHHHHH-HHHHHHHHHHTCSCHHHHHHHHGGGGC-----HHHH-HHHHTTHHHHHHHHHHHHHHTTSCCSC
T ss_pred HHHhCCHHHHHHHHH-HHHHHHHHHHCCCCHHHHHHHHHHhcc-----HHHH-HHHHHhHHHHHHHHHHHHHHHHHHccC
Confidence 4433 2333333332 467778888888888888888765422 2111 1221 12455554444 22226
Q ss_pred hhHHHHHHHHHHHHhcCC
Q 009636 342 KSIKKEACWTVSNITAGN 359 (530)
Q Consensus 342 ~~v~~~a~~~L~nl~~~~ 359 (530)
..++..+..++.-+..-+
T Consensus 351 ~~v~~l~~~vlk~l~e~d 368 (403)
T 3fga_B 351 KTIHGLIYNALKLFMEMN 368 (403)
T ss_dssp HHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 778888888887776543
No 159
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=64.79 E-value=3.8 Score=35.69 Aligned_cols=74 Identities=12% Similarity=0.061 Sum_probs=52.3
Q ss_pred CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 009636 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS 146 (530)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~ 146 (530)
+++..+.+.|++.++.+++.|+..|..++...+.....++.....+..|+.++.+..++.++..++..+...+.
T Consensus 42 ~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 46777888888999999999999888887664323334454555777777777654447888877777666554
No 160
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=64.67 E-value=22 Score=28.19 Aligned_cols=73 Identities=16% Similarity=0.139 Sum_probs=52.1
Q ss_pred cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcC-ChHHHHhccCCCC--------hHHHHHHHHHHHHHH
Q 009636 371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQG-CIKPLCDLLVCPD--------PRIVTVCLEGLENIL 441 (530)
Q Consensus 371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~-~i~~L~~lL~~~~--------~~~~~~al~~l~~ll 441 (530)
+++.|.+-|...++.++..|+.+|..++..+++.+...+.++- .|..+..+--.++ ..|+..|-+++..|+
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~ 129 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIF 129 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHh
Confidence 6678888899889999999999999999999988888776542 3444443332222 247777777666555
Q ss_pred Hh
Q 009636 442 KV 443 (530)
Q Consensus 442 ~~ 443 (530)
..
T Consensus 130 d~ 131 (140)
T 1vdy_A 130 SE 131 (140)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 161
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=63.90 E-value=35 Score=31.98 Aligned_cols=133 Identities=10% Similarity=0.007 Sum_probs=74.8
Q ss_pred HHHHHHHHhHhhcCCchhhHHHhhcCchHHHH-HhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHh
Q 009636 302 LIPALRTVGNIVTGDDMQTQCVIEYQALPCLL-NLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLE 380 (530)
Q Consensus 302 ~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~-~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~ 380 (530)
+-+++..+.-++...+.. +.+..++ ..+... .+..+.-++++++|+..+..-..+.+........+++.+.
T Consensus 180 ~FP~LDLLRl~v~~~~~~-------~~l~~li~~~~~~~-~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~ 251 (362)
T 3l3f_X 180 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNK-NITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETID 251 (362)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSC
T ss_pred cchHHHHHHHHhcCCChH-------HHHHHHHHHhcCCC-ChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHH
Confidence 556666666665533311 1222232 333344 7789999999999998764312222222112334444331
Q ss_pred --------cCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccC---------CCChHHHHHHHHHHHHHHHh
Q 009636 381 --------NAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV---------CPDPRIVTVCLEGLENILKV 443 (530)
Q Consensus 381 --------~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~---------~~~~~~~~~al~~l~~ll~~ 443 (530)
..+..++..++..+.|++.....+ . .+...+..+..++. ..|++....++-+|++++..
T Consensus 252 ~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~---~-~~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~ 327 (362)
T 3l3f_X 252 TEFSQASAKQSQNLAIAVSTLIFNYSALVTKG---N-SDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 327 (362)
T ss_dssp SCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHT---C-SCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred HHhhhcccCCCchHHHHHHHHHHHHHHHHhcc---c-chHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhc
Confidence 124578888888888988731100 0 00112334444444 35889999999999999976
Q ss_pred hhh
Q 009636 444 GEA 446 (530)
Q Consensus 444 ~~~ 446 (530)
.+.
T Consensus 328 ~~~ 330 (362)
T 3l3f_X 328 EPT 330 (362)
T ss_dssp CHH
T ss_pred CHH
Confidence 544
No 162
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=63.14 E-value=43 Score=32.11 Aligned_cols=133 Identities=10% Similarity=0.007 Sum_probs=76.6
Q ss_pred HHHHHHHHhHhhcCCchhhHHHhhcCchHHHH-HhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHh
Q 009636 302 LIPALRTVGNIVTGDDMQTQCVIEYQALPCLL-NLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLE 380 (530)
Q Consensus 302 ~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~-~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~ 380 (530)
+-+++..+.-++...+.. +.+..++ ..+... .+..+.-++.+++|+..+..-..+.+........+++.+.
T Consensus 243 ~FPaLDLLRl~v~~p~~~-------~~l~~li~~~l~~~-~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~ 314 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNK-NITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETID 314 (425)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSC
T ss_pred ccHHHHHHHHHHcCCchH-------HHHHHHHHHhcCCC-ChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHH
Confidence 666777776666543321 1222222 333344 7789999999999998764312223322223455555442
Q ss_pred --------cCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccC---------CCChHHHHHHHHHHHHHHHh
Q 009636 381 --------NAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV---------CPDPRIVTVCLEGLENILKV 443 (530)
Q Consensus 381 --------~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~---------~~~~~~~~~al~~l~~ll~~ 443 (530)
..+..++..++..+.|++...... . .+...+..+..++. ..|++....++-+|++|+..
T Consensus 315 ~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~---~-~~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~ 390 (425)
T 3pst_A 315 TEFSQASAKQSQNLAIAVSTLIFNYSALVTKG---N-SDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 390 (425)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHS---C-SCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred HHhhhcccCCCchHHHHHHHHHHHHHHHHhcc---c-chHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhc
Confidence 124568888888888987631000 0 00112334444443 35888999999999999965
Q ss_pred hhh
Q 009636 444 GEA 446 (530)
Q Consensus 444 ~~~ 446 (530)
.+.
T Consensus 391 ~~~ 393 (425)
T 3pst_A 391 EPT 393 (425)
T ss_dssp CHH
T ss_pred CHH
Confidence 543
No 163
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=60.34 E-value=39 Score=36.81 Aligned_cols=189 Identities=12% Similarity=0.051 Sum_probs=107.2
Q ss_pred hhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhC----CCCchhHHHHHHHHh-----
Q 009636 240 QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM----HPSPSVLIPALRTVG----- 310 (530)
Q Consensus 240 ~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~----~~~~~~~~~al~~L~----- 310 (530)
....++.-|+.+--+.-.+|+..|-.++..+...-...... +++.+++.|. ..+.+-..-|+++|.
T Consensus 130 l~~~ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~-----iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~ 204 (997)
T 1vsy_5 130 LENLLLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGV-----VINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIH 204 (997)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHH-----HHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHH
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHH-----HHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhh
Confidence 34556667777777788899999999998877654433332 3444555543 445666667777654
Q ss_pred HhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC--C-----------------------------
Q 009636 311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG--N----------------------------- 359 (530)
Q Consensus 311 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~--~----------------------------- 359 (530)
..+..+-. .-..+++.|+.....+ ++.+++-+-.+...+..+ .
T Consensus 205 ~~~~~d~~-----~~~~~~~ali~~~~~d-KpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~ 278 (997)
T 1vsy_5 205 RKLMTDYK-----DIGRLIFLLIECCRVN-ELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAV 278 (997)
T ss_dssp HHGGGCHH-----HHHHHHHHHHHTCSCS-SSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHH
T ss_pred hHHhcChH-----HHHHHHHHHHHhCcCC-CHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHH
Confidence 11211111 1123455555555555 666665554443333321 0
Q ss_pred ----HHHHHHHHH--hCcHHHHHHHHhc-Cc--hhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHH
Q 009636 360 ----REQIQAVIE--ANIIGPLVALLEN-AE--FDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIV 430 (530)
Q Consensus 360 ----~~~~~~l~~--~~~i~~L~~ll~~-~~--~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~ 430 (530)
...+....+ .++...|++..++ .+ .+....++..+.++...-+.. ....++..+++.+.+++|.++
T Consensus 279 ~~~~~~~r~~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~~-----~~~~~v~~~~~~l~~dhp~~R 353 (997)
T 1vsy_5 279 KLAKKKKREYYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLESK-----PDKRAVFSIISQISTKHPEII 353 (997)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSCC-----CCHHHHHHHHGGGGGCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCCC-----CCHHHHHHHHHhhcCCCHHHH
Confidence 000000111 2344444555522 36 788888888877776432100 111246677888889999999
Q ss_pred HHHHHHHHHHHHhh
Q 009636 431 TVCLEGLENILKVG 444 (530)
Q Consensus 431 ~~al~~l~~ll~~~ 444 (530)
..++.++..++...
T Consensus 354 ~~a~~~l~~il~~~ 367 (997)
T 1vsy_5 354 HLVVKSLLSTCNKI 367 (997)
T ss_dssp HHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998888653
No 164
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=60.01 E-value=1.1e+02 Score=34.14 Aligned_cols=306 Identities=11% Similarity=0.053 Sum_probs=0.0
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHc----------CCHHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 009636 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRS----------GVVPRFVEFLLREDYPQLQFEAAWALTNI 144 (530)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~----------g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l 144 (530)
...|.+++.. ++......+.+|.++-.. ......+.+. ..+|.++++|-...++.-..+++..|..-
T Consensus 194 ~~~L~~lL~~-~~~L~~~iLdaLs~L~Ls--~~~l~~vr~~vl~~L~s~~~e~LP~lIkFLL~s~t~~~~~evI~~LR~~ 270 (1323)
T 3s4w_B 194 GKELGELLVQ-NTSLTVPILDVFSSLRLD--PNFLSKIRQLVMGKLSSVRLEDFPVIVKFLLHSVTDTTSLEVIAELREN 270 (1323)
T ss_dssp HHHHHHHHHH-CSTTHHHHHHHHHHSCCC--HHHHHHHHHHHHHSTTSSCTTHHHHHHHHHHHSCSSTTHHHHHHHHHHH
T ss_pred HHHHHHHHhc-CcchHHHHHHHHHcCCCC--HHHHHHHHHHHHHHhccCChhhhHHHHHHHHHhCCHhhHHHHHHHHHHH
Q ss_pred hcCCh--------hhHHHHHhCC--------------ChHHHHHhhCC---CCHHHHHHHHHHHHhhhCCCchhhhhHhh
Q 009636 145 ASGTS--------EHTKVVIDHG--------------AVPIFVKLLYS---PSDDVREQAVWALGNIAGDSPRCRDLVLS 199 (530)
Q Consensus 145 ~~~~~--------~~~~~~~~~g--------------~i~~L~~ll~~---~~~~i~~~a~~~L~nl~~~~~~~~~~i~~ 199 (530)
..... .....+...| ....++..+++ ....+.+..+..|.++....+
T Consensus 271 L~~~~~~~p~~~~~s~~~~k~~~~~~~~~~~~~s~~~~~~lild~lks~l~~~k~i~eAwlK~I~~~~~~~~-------- 342 (1323)
T 3s4w_B 271 LNVQQFILPSRIQASQSKLKSKGLASSSGNQENSDKDCIVLVFDVIKSAIRYEKTISEAWFKAIERIESAAE-------- 342 (1323)
T ss_dssp HHCC----------------------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHGGGSTT--------
T ss_pred cCccccccchhhhhhhhhhhccccccCCccccccccchHHHHHHHHHHHHhcChHHHHHHHHHHhCCCcccc--------
Q ss_pred cCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhh--------------hchHHHHHHhhcCCChhHHHHHHH
Q 009636 200 QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQV--------------SPALPALAHLIHSNDDEVLTDACW 265 (530)
Q Consensus 200 ~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~--------------~~~l~~L~~ll~~~d~~v~~~a~~ 265 (530)
...+..++=++..+.+...++.+-.++.+-............ ..++...-.++.+.++.++.-+..
T Consensus 343 hk~~Dl~vLlii~s~n~~~rk~aE~ilrkkI~~G~it~~ll~~~f~~h~~vL~~~f~siL~La~~Ll~S~~~~v~~Fg~~ 422 (1323)
T 3s4w_B 343 HKSLDVVMLLIIYSTSTQTKKGVEKLLRNKIQSDCIQEQLLDSAFSTHYLVLKDICPSILLLAQTLFHSQDQRIILFGSL 422 (1323)
T ss_dssp CCTHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHH
T ss_pred cchhHHHHHHHHHcCCchhHHHHHHHHHHHHHcCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Q ss_pred HHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHH
Q 009636 266 ALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIK 345 (530)
Q Consensus 266 ~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~ 345 (530)
....+-...++ .....++..|+..+.+++..-...|+.+|..++..++......-. .+..++..+.+- +..--
T Consensus 423 lY~~lF~~fd~----~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~~~~~l~~~a~--~l~giLD~l~~l-~~~Qi 495 (1323)
T 3s4w_B 423 LYKYAFKFFDT----YCQQEVVGALVTHVCSGTEAEVDTALDVLLELIVLNASAMRLNAA--FVKGILDYLENM-SPQQI 495 (1323)
T ss_dssp HHHHHHHSSCH----HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHTHH--HHHGGGGGGGGC-CHHHH
T ss_pred HHHHHHHhccc----hhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhcCHHHHhHHHH--HHHHHHHhhcCC-CHHHH
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhh
Q 009636 346 KEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNAT 398 (530)
Q Consensus 346 ~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~ 398 (530)
+....+|+.++......-...++..+.-.+-+.+.+.+.+.++....+-..++
T Consensus 496 Rklf~iL~~laf~~~~~~~~~i~ddl~ivIRKQLs~~~~~~KriGIIGav~~v 548 (1323)
T 3s4w_B 496 RKIFCILSTLAFSQQPGTSNHIQDDMHLVIRKQLSSTVFKYKLIGIIGAVTMA 548 (1323)
T ss_dssp HHHHHHHHHHHHHHCSSCCCHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcchhhHHhHHHHHHHHHhCCchhhhhhhHHHHHHHH
No 165
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=59.47 E-value=27 Score=33.43 Aligned_cols=104 Identities=8% Similarity=0.051 Sum_probs=65.4
Q ss_pred hCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCC-------CchhHHHHHHHHHHHHhcCCHHHHHHH
Q 009636 294 LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-------YKKSIKKEACWTVSNITAGNREQIQAV 366 (530)
Q Consensus 294 L~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-------~~~~v~~~a~~~L~nl~~~~~~~~~~l 366 (530)
+....+..+..++++++|+........+.+........++..+... .+..++..++..+-|++.......
T Consensus 271 l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~--- 347 (425)
T 3pst_A 271 LGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGN--- 347 (425)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSC---
T ss_pred cCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhccc---
Confidence 3345677889999999999975543333333333345555554321 145688888889999976321100
Q ss_pred HHhCcHHHHHHHHh---------cCchhHHHHHHHHHHHhhcC
Q 009636 367 IEANIIGPLVALLE---------NAEFDIKKEAAWAISNATSG 400 (530)
Q Consensus 367 ~~~~~i~~L~~ll~---------~~~~~v~~~a~~aL~nl~~~ 400 (530)
.+..+...+.+++. ..+.+....++.||++++..
T Consensus 348 ~~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~ 390 (425)
T 3pst_A 348 SDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 390 (425)
T ss_dssp SCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhc
Confidence 01234455666665 24788999999999999864
No 166
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=58.97 E-value=1.3e+02 Score=29.04 Aligned_cols=240 Identities=17% Similarity=0.133 Sum_probs=122.0
Q ss_pred HHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhC
Q 009636 110 EEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAG 188 (530)
Q Consensus 110 ~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~ 188 (530)
...++...+-.|+.+++++| +.-|...-.+|..+-..-...+..+.. .+-..+.+++.. ....-....+.+++.|..
T Consensus 156 k~~id~~Fi~~Ll~lfdSeD-pRERd~LktiLhrIY~Kf~~~R~~Irk-~i~nif~~fi~e~e~~nGIaeLLeilgSIin 233 (449)
T 2npp_B 156 KKYIDQKFVLQLLELFDSED-PRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIIN 233 (449)
T ss_dssp GGTSCHHHHHHHHHTTTSST-HHHHHHHHHHHHHHHHSCTTTHHHHHH-HHHHHHHHHHHTCSCCSCHHHHHHHHHHHHS
T ss_pred hhhCCHHHHHHHHHHcCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcccCCCCCHHHHHHHHHHHHh
Confidence 33445556778888988888 888877777777776644445444432 223345555533 111222346677777764
Q ss_pred CCc-hhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHH
Q 009636 189 DSP-RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWAL 267 (530)
Q Consensus 189 ~~~-~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l 267 (530)
+-. ..+..- ..-....|+.+.+...-.........|+..++..++. ....++..|++.=-..+..-..-.+.-+
T Consensus 234 Gfa~PLKeeh-k~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~----L~~~vi~~LLk~WP~tns~KevlFL~el 308 (449)
T 2npp_B 234 GFALPLKEEH-KIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDST----LTEPVVMALLKYWPKTHSPKEVMFLNEL 308 (449)
T ss_dssp SCCSSCCHHH-HHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGG----GHHHHHHHHHHTCCSSCHHHHHHHHHHH
T ss_pred ccCCCCcHHH-HHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcH----hHHHHHHHHHHhCCCCCchHHHHHHHHH
Confidence 421 111110 0001223333442222223334455566555554332 1122333333332233433333344444
Q ss_pred HHhccC-ChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhh---cCchHHHHHhhcCC----
Q 009636 268 SYLSDG-TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIE---YQALPCLLNLLSGN---- 339 (530)
Q Consensus 268 ~~l~~~-~~~~~~~~~~~~~l~~L~~lL~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~---~~~l~~L~~lL~~~---- 339 (530)
..+... .+...+.+.. .++..+...+.+.+..|.+.|+....| +... .++. ..++|.+...|...
T Consensus 309 eeile~~~~~ef~~i~~-~lF~~la~ci~S~hfqVAErAL~~w~N-----~~i~-~li~~n~~~IlPii~p~L~~~s~~H 381 (449)
T 2npp_B 309 EEILDVIEPSEFVKIME-PLFRQLAKCVSSPHFQVAERALYYWNN-----EYIM-SLISDNAAKILPIMFPSLYRNSKTH 381 (449)
T ss_dssp HHHHTTCCHHHHHHHHH-HHHHHHHHHHTCSCHHHHHHHHGGGGC-----HHHH-HHHHTTHHHHHHHHHHHHTSCTTCC
T ss_pred HHHHHhCCHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHCC-----HHHH-HHHHhchhhhHHhhHHHHHHHHHHh
Confidence 444433 2333332332 467778888888888888888755432 2111 1221 23566666655221
Q ss_pred CchhHHHHHHHHHHHHhcCCHHHH
Q 009636 340 YKKSIKKEACWTVSNITAGNREQI 363 (530)
Q Consensus 340 ~~~~v~~~a~~~L~nl~~~~~~~~ 363 (530)
=+..++..+..++.-+..-++...
T Consensus 382 Wn~~V~~la~~vlk~l~e~d~~lf 405 (449)
T 2npp_B 382 WNKTIHGLIYNALKLFMEMNQKLF 405 (449)
T ss_dssp SSTTHHHHHHHHHHHHHTTCHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHCHHHH
Confidence 156789988888888877666543
No 167
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=58.35 E-value=17 Score=32.31 Aligned_cols=102 Identities=7% Similarity=0.057 Sum_probs=62.0
Q ss_pred CCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCC-------CchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009636 296 HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-------YKKSIKKEACWTVSNITAGNREQIQAVIE 368 (530)
Q Consensus 296 ~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-------~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 368 (530)
+..+..+.-++++++|+........+.+........++..+... .+..++..++..+-|++........ +
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~ 177 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 177 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---C
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---h
Confidence 44667889999999999986653333444332334444433211 1557888888999999862111000 1
Q ss_pred hCcHHHHHHHHhc---------CchhHHHHHHHHHHHhhcC
Q 009636 369 ANIIGPLVALLEN---------AEFDIKKEAAWAISNATSG 400 (530)
Q Consensus 369 ~~~i~~L~~ll~~---------~~~~v~~~a~~aL~nl~~~ 400 (530)
......+++.+.. .+.+....++.||+++...
T Consensus 178 ~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~ 218 (253)
T 3gae_A 178 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 218 (253)
T ss_dssp TTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhC
Confidence 2234455555542 3678888999999999863
No 168
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=57.67 E-value=12 Score=27.81 Aligned_cols=40 Identities=10% Similarity=0.148 Sum_probs=34.4
Q ss_pred HHHhhhhccHHHHHHHhcC-CCHHHHHHHHHHHHHhCCCCC
Q 009636 459 TQMIDDAEGLEKIESLQTH-DNAEIYEKSVKLLETYWLDDE 498 (530)
Q Consensus 459 ~~~l~~~~~~~~l~~l~~~-~~~~v~~~a~~il~~~~~~~~ 498 (530)
...|.+.+.-..+..|..| ++++|...|..++..|-.-.+
T Consensus 47 ~e~L~~T~IGk~Vn~LrKh~~~~~V~~lAk~Lv~~WK~~v~ 87 (103)
T 1wjt_A 47 IQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNWKRLLD 87 (103)
T ss_dssp HHHHHHTCHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcchhHHHHHHHccCCcHHHHHHHHHHHHHHHHHHH
Confidence 7788889988999999876 999999999999999865433
No 169
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=57.58 E-value=92 Score=26.73 Aligned_cols=138 Identities=9% Similarity=0.016 Sum_probs=82.4
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHhccC-ChHHHHHHHHhCcHHHHHHhhC-CCCchhHHHHHHHHhHhhcCCchhhHHH
Q 009636 246 PALAHLIHSNDDEVLTDACWALSYLSDG-TNDKIQAVIEAGVFPRLAEFLM-HPSPSVLIPALRTVGNIVTGDDMQTQCV 323 (530)
Q Consensus 246 ~~L~~ll~~~d~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~l~~L~~lL~-~~~~~~~~~al~~L~nl~~~~~~~~~~~ 323 (530)
..+..+..++.-+.+.-++..+...... .++. ++.+-.++. -+++.+....+.+++.++...+..
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~~~~---------l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~~~---- 124 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQRFSLEE---------VVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLTE---- 124 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGGCCHHH---------HHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGGG----
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhhCCHHH---------HHHHHHHhccCCcHHHHHHHHHHHHHHHHHChHH----
Confidence 3344555556666666666666655422 2211 222233333 367777777667777776544322
Q ss_pred hhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCC
Q 009636 324 IEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGT 402 (530)
Q Consensus 324 ~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~ 402 (530)
+.+.+..+..++ +.-+++.|+-.+..... .+++. +++.+-..+.+++.-|++.+.|+|..+... +
T Consensus 125 ----~~~~i~~W~~s~-~~w~rR~ai~~~l~~~~~~~~~~--------~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~-~ 190 (220)
T 2b6c_A 125 ----LPTIFALFYGAE-NFWNRRVALNLQLMLKEKTNQDL--------LKKAIIYDRTTEEFFIQKAIGWSLRQYSKT-N 190 (220)
T ss_dssp ----HHHHHHHHTTCS-SHHHHHHHHHTTTTCGGGCCHHH--------HHHHHHHTTTCCCHHHHHHHHHHHHHHTTT-C
T ss_pred ----HHHHHHHHHcCC-CHHHHHHHHHHHHHHHHCCCHHH--------HHHHHHHhCCChHHHHHHHHHHHHHHHHhh-C
Confidence 345678888888 88888877764432222 22211 233333366777899999999999999987 5
Q ss_pred HHHHHHHH
Q 009636 403 HEQIKFLV 410 (530)
Q Consensus 403 ~~~~~~l~ 410 (530)
++....++
T Consensus 191 ~~~v~~fl 198 (220)
T 2b6c_A 191 PQWVEELM 198 (220)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55544444
No 170
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=57.57 E-value=37 Score=27.05 Aligned_cols=75 Identities=12% Similarity=0.168 Sum_probs=55.8
Q ss_pred HHHHHHHHcCChHHHHhccC------CCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcC
Q 009636 404 EQIKFLVIQGCIKPLCDLLV------CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTH 477 (530)
Q Consensus 404 ~~~~~l~~~~~i~~L~~lL~------~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~ 477 (530)
.....+++.|++..+-..|. -++..++...+.+|..+ +- -.+.+.++|.-..+..|..|
T Consensus 52 ~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~l----PI-----------~~e~Lk~SglGkvv~~l~k~ 116 (145)
T 2xpp_A 52 ALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTM----KI-----------HKEHLVTSGVGKIVYFYSIN 116 (145)
T ss_dssp TTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTS----CC-----------CHHHHHHHCHHHHHHHHHHC
T ss_pred HHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHC----CC-----------CHHHhhcCCCCcchhhhhcC
Confidence 34567788899988888875 25667888877777654 21 15567778888888888765
Q ss_pred --CCHHHHHHHHHHHHHh
Q 009636 478 --DNAEIYEKSVKLLETY 493 (530)
Q Consensus 478 --~~~~v~~~a~~il~~~ 493 (530)
+.++++..|..++++|
T Consensus 117 ~~et~~nk~la~~Li~~W 134 (145)
T 2xpp_A 117 PKESKEVRASAKALVQKW 134 (145)
T ss_dssp TTSCHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHH
Confidence 5667999999999987
No 171
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=56.19 E-value=26 Score=32.88 Aligned_cols=103 Identities=7% Similarity=0.035 Sum_probs=63.3
Q ss_pred CCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcC----C---CchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 009636 295 MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG----N---YKKSIKKEACWTVSNITAGNREQIQAVI 367 (530)
Q Consensus 295 ~~~~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~----~---~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 367 (530)
....+..+..++++++|+........+.+........++..+.. . .+..++..++..+-|++....... .
T Consensus 209 ~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~---~ 285 (362)
T 3l3f_X 209 GNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGN---S 285 (362)
T ss_dssp TCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTC---S
T ss_pred CCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhccc---c
Confidence 34567788999999999997554333333322222333433311 1 145688888889999986321100 0
Q ss_pred HhCcHHHHHHHHh---------cCchhHHHHHHHHHHHhhcC
Q 009636 368 EANIIGPLVALLE---------NAEFDIKKEAAWAISNATSG 400 (530)
Q Consensus 368 ~~~~i~~L~~ll~---------~~~~~v~~~a~~aL~nl~~~ 400 (530)
+..+...+.+++. ..+.+....++.||++++..
T Consensus 286 ~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~ 327 (362)
T 3l3f_X 286 DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 327 (362)
T ss_dssp CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhc
Confidence 0234456666665 35889999999999999864
No 172
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=55.05 E-value=21 Score=29.03 Aligned_cols=73 Identities=11% Similarity=0.103 Sum_probs=54.9
Q ss_pred cHHHHHHHHh-cCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHH-HHhccCC---CChHHHHHHHHHHHHHHHh
Q 009636 371 IIGPLVALLE-NAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKP-LCDLLVC---PDPRIVTVCLEGLENILKV 443 (530)
Q Consensus 371 ~i~~L~~ll~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~-L~~lL~~---~~~~~~~~al~~l~~ll~~ 443 (530)
++..|.+-+. +.++.++..|+..|-.++.++.......+.+..++.. |+.++.. .+..|+..++..+...-..
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~ 131 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADA 131 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 4556777776 4789999999999999999887777777777788887 7777742 3457888887777665543
No 173
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=52.33 E-value=53 Score=29.08 Aligned_cols=105 Identities=10% Similarity=0.014 Sum_probs=61.8
Q ss_pred CCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCC-------CchhHHHHHHHHhhhhccCC-C-CCChhh
Q 009636 170 SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQ-------PKLSMLRNATWTLSNFCRGK-P-QPPFDQ 240 (530)
Q Consensus 170 ~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~-------~~~~~~~~a~~~L~~L~~~~-~-~~~~~~ 240 (530)
+.++..+-.++++++|+..+....+..+........++..+... .+..++-.+...+.|++... . ......
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~~~e~ 180 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSDLEL 180 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCSCTTH
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccchHHH
Confidence 45678899999999999877763355554433344445444211 25667777888888887643 1 111122
Q ss_pred hhchHHHHHHhhc-----CCChhHHHHHHHHHHHhccCC
Q 009636 241 VSPALPALAHLIH-----SNDDEVLTDACWALSYLSDGT 274 (530)
Q Consensus 241 ~~~~l~~L~~ll~-----~~d~~v~~~a~~~l~~l~~~~ 274 (530)
...++..+...+. ..|++....++.+++++...+
T Consensus 181 ~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~ 219 (253)
T 3gae_A 181 LPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 219 (253)
T ss_dssp HHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCc
Confidence 2223333332211 237788888899998887533
No 174
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=52.02 E-value=1.2e+02 Score=26.30 Aligned_cols=139 Identities=12% Similarity=0.095 Sum_probs=80.1
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHhcc-CChHHHHHHHHhCcHHHHHHhhC-CCCchhHHHH-HHHHhHhhcCCchhhHHH
Q 009636 247 ALAHLIHSNDDEVLTDACWALSYLSD-GTNDKIQAVIEAGVFPRLAEFLM-HPSPSVLIPA-LRTVGNIVTGDDMQTQCV 323 (530)
Q Consensus 247 ~L~~ll~~~d~~v~~~a~~~l~~l~~-~~~~~~~~~~~~~~l~~L~~lL~-~~~~~~~~~a-l~~L~nl~~~~~~~~~~~ 323 (530)
.+..+..++..+.+.-++..+..... ..++ .++.+-.++. .+++.+.... ..+++.+....+.
T Consensus 65 ~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~---------~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~p~----- 130 (232)
T 3jxy_A 65 IIRELWDLPEREFQAAALDIMQKYKKHINET---------HIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPE----- 130 (232)
T ss_dssp HHHHHHTSSBHHHHHHHHHHHHHTGGGCCGG---------GHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHCGG-----
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHhCCHH---------HHHHHHHHHccCCChHHHHHhhHHHHHHHHHHCHH-----
Confidence 44455555555666555555543221 1121 1222333332 3567766554 3555665543332
Q ss_pred hhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCC
Q 009636 324 IEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGT 402 (530)
Q Consensus 324 ~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~ 402 (530)
...+.+..++.++ +.-+++.|+-.+..... .++. ..++.+...+.+++.-|++.+.|+|..+... +
T Consensus 131 ---~~~~~l~~W~~s~-~~w~rR~ai~~~l~~~~~~d~~--------~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~-~ 197 (232)
T 3jxy_A 131 ---LISAYIPKWIASD-NIWLQRAAILFQLKYKQKMDEE--------LLFWIIGQLHSSKEFFIQKAIGWVLREYAKT-N 197 (232)
T ss_dssp ---GGGGTHHHHHHSS-CHHHHHHHHHTTTTCGGGCCHH--------HHHHHHHHHTTCCCHHHHHHHHHHHHHHTTT-C
T ss_pred ---HHHHHHHHHhcCC-chHHHHHHHHHHHHHHhCCCHH--------HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh-C
Confidence 2456788889888 88888877655422211 2222 1334455667788999999999999999987 5
Q ss_pred HHHHHHHHHc
Q 009636 403 HEQIKFLVIQ 412 (530)
Q Consensus 403 ~~~~~~l~~~ 412 (530)
++....+++.
T Consensus 198 p~~v~~fl~~ 207 (232)
T 3jxy_A 198 PDVVWEYVQN 207 (232)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6665555543
No 175
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=49.46 E-value=92 Score=29.51 Aligned_cols=73 Identities=19% Similarity=0.197 Sum_probs=40.2
Q ss_pred HHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHhhh
Q 009636 113 IRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSP-SDDVREQAVWALGNIA 187 (530)
Q Consensus 113 ~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~i~~~a~~~L~nl~ 187 (530)
++...+-.|+.+++++| +.-|...-.+|..+-......+..+.+ .+-..+.+++... ...-....+.+++.+.
T Consensus 171 id~~Fi~~Ll~lfdSeD-pRERd~LktiLhrIY~Kf~~~R~~Irk-~i~nif~~fiye~e~~~GIaeLLeilgsII 244 (392)
T 2jak_A 171 IDQKFVLQLLELFDSED-PRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSII 244 (392)
T ss_dssp SCHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCGGGHHHHHH-HHHHHHHHHHTSSCCCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhccCCCCCHHHHHHHHHHHH
Confidence 34456777888888887 777777777776665544444443332 2234455555441 1112234556666665
No 176
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=44.18 E-value=72 Score=26.12 Aligned_cols=77 Identities=10% Similarity=0.072 Sum_probs=56.7
Q ss_pred HHHHHHHHcCChHHHHhccC------CCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcC
Q 009636 404 EQIKFLVIQGCIKPLCDLLV------CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTH 477 (530)
Q Consensus 404 ~~~~~l~~~~~i~~L~~lL~------~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~ 477 (530)
.....|++.|++..+...|. -++..++...+.+|..+ +- -.+.+.++|.-..+..+..|
T Consensus 67 ~L~~~~ld~giL~~l~~WLePLpDgSLP~~~Ir~~lL~~L~~l----PI-----------~~e~Lk~SglGkvV~~l~k~ 131 (170)
T 3nfq_A 67 NLADTILDNNLLQSVRIWLEPLPDGSLPSFEIQKSLFAALNDL----PV-----------KTEHLKESGLGRVVIFYTKS 131 (170)
T ss_dssp GGHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTS----CC-----------CHHHHHHHSHHHHHHHHHHC
T ss_pred HHHHHHHHcchHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHC----CC-----------CHHHHhhCCCCceeeehhcC
Confidence 44567788899998888885 24567888877777654 21 14567788877788777765
Q ss_pred --CCHHHHHHHHHHHHHhCC
Q 009636 478 --DNAEIYEKSVKLLETYWL 495 (530)
Q Consensus 478 --~~~~v~~~a~~il~~~~~ 495 (530)
+.++++..|..++++|--
T Consensus 132 ~~et~~nkrla~~Li~~WsR 151 (170)
T 3nfq_A 132 KRVEAQLARLAEKLIAEWTR 151 (170)
T ss_dssp TTSCHHHHHHHHHHHHHHTC
T ss_pred CcccHHHHHHHHHHHHHHHH
Confidence 557799999999999844
No 177
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=35.15 E-value=77 Score=25.45 Aligned_cols=74 Identities=12% Similarity=0.156 Sum_probs=48.1
Q ss_pred ChHHHHhccC-CCChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHH-HHHHhc---CCCHHHHHHHHH
Q 009636 414 CIKPLCDLLV-CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEK-IESLQT---HDNAEIYEKSVK 488 (530)
Q Consensus 414 ~i~~L~~lL~-~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-l~~l~~---~~~~~v~~~a~~ 488 (530)
++..|..-|. ..++.++..|+..|..+++.+.. .|...+....+++. |..+.. +...+|++++..
T Consensus 54 A~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~----------~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~ 123 (152)
T 3rru_A 54 AVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGP----------SFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILN 123 (152)
T ss_dssp HHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCH----------HHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCH----------HHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence 4555555565 35777888899988888876643 24444544444432 444432 345689999999
Q ss_pred HHHHhCCCC
Q 009636 489 LLETYWLDD 497 (530)
Q Consensus 489 il~~~~~~~ 497 (530)
+|+.|-...
T Consensus 124 li~~Wa~~F 132 (152)
T 3rru_A 124 FIKTWSQGF 132 (152)
T ss_dssp HHHHHHTCC
T ss_pred HHHHHHHHh
Confidence 999986643
No 178
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=33.99 E-value=1.6e+02 Score=24.70 Aligned_cols=112 Identities=14% Similarity=0.105 Sum_probs=66.0
Q ss_pred CChHHHHHhhCC------CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCC--chhHHHHHHHHhhhhc
Q 009636 159 GAVPIFVKLLYS------PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP--KLSMLRNATWTLSNFC 230 (530)
Q Consensus 159 g~i~~L~~ll~~------~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~--~~~~~~~a~~~L~~L~ 230 (530)
..+|.+++++.+ .+.......+.....|.....-.-+. .-...+|+++.++-... ...++..|+..+..+|
T Consensus 40 ~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lep-YlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~ 118 (196)
T 4atg_A 40 QLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDP-YLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIY 118 (196)
T ss_dssp TTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGG-GHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHH-HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHH
Confidence 356777766532 34555555555555555433211111 11226777777664221 2279999999999999
Q ss_pred cCCCCCChhhhhchHHHHHHhhcCC--ChhHHHHHHHHHHHhc
Q 009636 231 RGKPQPPFDQVSPALPALAHLIHSN--DDEVLTDACWALSYLS 271 (530)
Q Consensus 231 ~~~~~~~~~~~~~~l~~L~~ll~~~--d~~v~~~a~~~l~~l~ 271 (530)
+............+...+.+.+.++ ......-|++.+..+.
T Consensus 119 ~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG 161 (196)
T 4atg_A 119 DTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILS 161 (196)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC
T ss_pred HHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhH
Confidence 8765444444566777777777654 3445556777776664
No 179
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=33.46 E-value=1.7e+02 Score=23.19 Aligned_cols=77 Identities=9% Similarity=0.042 Sum_probs=56.3
Q ss_pred hhhHHHhhcCchHHHHHhhcCCC-----chhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC--chhHHHHH
Q 009636 318 MQTQCVIEYQALPCLLNLLSGNY-----KKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEA 390 (530)
Q Consensus 318 ~~~~~~~~~~~l~~L~~lL~~~~-----~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a 390 (530)
.....+++.|++..+-.+|..-. ...+|.....+|.++-. ....+.+.|+-..++-+-.+. .+..++.|
T Consensus 52 ~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lPI----~~e~Lk~SglGkvv~~l~k~~~et~~nk~la 127 (145)
T 2xpp_A 52 ALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMKI----HKEHLVTSGVGKIVYFYSINPKESKEVRASA 127 (145)
T ss_dssp TTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSCC----CHHHHHHHCHHHHHHHHHHCTTSCHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCCC----CHHHhhcCCCCcchhhhhcCCccCHHHHHHH
Confidence 34567889999999999997421 46799999999999842 245677788877777776665 56788877
Q ss_pred HHHHHHhh
Q 009636 391 AWAISNAT 398 (530)
Q Consensus 391 ~~aL~nl~ 398 (530)
-..+...+
T Consensus 128 ~~Li~~Ws 135 (145)
T 2xpp_A 128 KALVQKWT 135 (145)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77666554
No 180
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=33.11 E-value=3.5e+02 Score=26.35 Aligned_cols=184 Identities=14% Similarity=0.149 Sum_probs=109.1
Q ss_pred hchHHHHHHhhcCCC-----hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhh-CCC-----CchhHHHHHHHHh
Q 009636 242 SPALPALAHLIHSND-----DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL-MHP-----SPSVLIPALRTVG 310 (530)
Q Consensus 242 ~~~l~~L~~ll~~~d-----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~-----~~~~~~~al~~L~ 310 (530)
..+++.|...+++.. ......+.-.+...+..+..... .+++.+-++| .+. +++. .+..+.
T Consensus 30 ~~ll~~L~t~~e~~~~p~~in~Lie~~~LnL~~~t~~~~~~~~-----~ll~~Ik~iL~~~~~~~~lD~~~---Li~Ll~ 101 (500)
T 3vld_A 30 ENLLTQLENELNEDNLPEDINTLLRKCSLNLVTVVSLPDMDVK-----PLLATIKRFLTSNVSYDSLNYDY---LLDVVD 101 (500)
T ss_dssp HHHHHHHHHHHHTSSCCTTHHHHHHHHHHHHHHSCSCCSCCCH-----HHHHHHHHHHHCSSCCTTCCHHH---HHHHHH
T ss_pred HHHHHHHHhhhccCCCCchhHHHHHHHhhcchhcccCCcccHH-----HHHHHHHHHHcCCccccccCHHH---HHHHHH
Confidence 444555555554432 34555566666666554431112 2445666666 331 3333 344444
Q ss_pred HhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchh---HH
Q 009636 311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFD---IK 387 (530)
Q Consensus 311 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~---v~ 387 (530)
.+....+ .+.+++.=-+..+..-|.++ .+.+...||.++. ... -...+...+++..|+.++-..+.. +.
T Consensus 102 ~il~~~~--Fd~VLevysve~i~~aL~S~-~~~l~~~~ckVI~---~s~--pk~lfa~t~iidiLL~lyFd~~t~i~~vv 173 (500)
T 3vld_A 102 KLVPMAD--FDDVLEVYSAEDLVKALRSE-IDPLKVAACRVIE---NSQ--PKGLFATSNIIDILLDILFDEKVENDKLI 173 (500)
T ss_dssp HHHHHSC--HHHHHHHSCHHHHHHHHTSS-CHHHHHHHHHHHH---TCS--SGGGGTTSSHHHHHHHHHTCTTCCCHHHH
T ss_pred HHHhcCC--HHHHHHhCCHHHHHHHHhcC-ChHHHHHHHHHhc---ccC--chhHhccChHHHHHHHHHcCCCCCcHHHH
Confidence 4443322 23456666688899999998 8999999999988 211 123455678999999998766433 66
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHHhh
Q 009636 388 KEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG 444 (530)
Q Consensus 388 ~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~~~ 444 (530)
..+-.++..++. +.-.++.+.+ ..++.|..+=+..++.+....++.+.-++.+.
T Consensus 174 n~IE~~~~~Lss--deLirrril~-nnl~lL~~vK~~~~~i~~sRLLdll~il~~~i 227 (500)
T 3vld_A 174 TAIEKALERLST--DELIRRRLFD-NNLPYLVSVKGRMETVSFVRLIDFLTIEFQFI 227 (500)
T ss_dssp HHHHHHHHHHTT--SHHHHHHHHT-TTHHHHHHHHHHCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCc--hHHHHHHHHH-HhHHHHHHHhcCCCceeHHHHHHHHHHHhccc
Confidence 777777777755 3223444443 45666666656677777777777777666554
No 181
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=29.99 E-value=2.6e+02 Score=23.80 Aligned_cols=139 Identities=10% Similarity=-0.029 Sum_probs=86.5
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhhhhH
Q 009636 120 RFVEFLLREDYPQLQFEAAWALTNIASG-TSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLV 197 (530)
Q Consensus 120 ~Lv~ll~~~~~~~i~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~~i 197 (530)
.+..+..++. -+.+..|+.++...... .++. ++.+-.++.. ++..+.+..+.+++.+....+..
T Consensus 59 ~~~~L~~s~~-~E~r~la~~~l~~~~~~~~~~~---------l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~~~---- 124 (220)
T 2b6c_A 59 EIEAYYQKTE-REYQYVAIDLALQNVQRFSLEE---------VVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLTE---- 124 (220)
T ss_dssp HHHHHHTSSS-HHHHHHHHHHHHHTGGGCCHHH---------HHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGGG----
T ss_pred HHHHHHcCch-hHHHHHHHHHHHHHHhhCCHHH---------HHHHHHHhccCCcHHHHHHHHHHHHHHHHHChHH----
Confidence 3455666665 78888888888876532 2221 2222333333 67788887667777775433321
Q ss_pred hhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHH
Q 009636 198 LSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDK 277 (530)
Q Consensus 198 ~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~ 277 (530)
..+.+...+ .+++.-+++.++-++...... ......++.+..++.+++.-|+..+.|+|..++..+++.
T Consensus 125 ----~~~~i~~W~-~s~~~w~rR~ai~~~l~~~~~------~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~ 193 (220)
T 2b6c_A 125 ----LPTIFALFY-GAENFWNRRVALNLQLMLKEK------TNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQW 193 (220)
T ss_dssp ----HHHHHHHHT-TCSSHHHHHHHHHTTTTCGGG------CCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHH
T ss_pred ----HHHHHHHHH-cCCCHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHH
Confidence 223455555 788888888887755322111 112344666666788888899999999999999888776
Q ss_pred HHHHHH
Q 009636 278 IQAVIE 283 (530)
Q Consensus 278 ~~~~~~ 283 (530)
...++.
T Consensus 194 v~~fl~ 199 (220)
T 2b6c_A 194 VEELMK 199 (220)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 554443
No 182
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=28.38 E-value=92 Score=28.45 Aligned_cols=37 Identities=11% Similarity=0.213 Sum_probs=33.4
Q ss_pred HHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009636 459 TQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL 495 (530)
Q Consensus 459 ~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~ 495 (530)
..+|.+.++-..+..|..|++++|...|..++..|-.
T Consensus 38 ~~~L~~T~IG~~Vn~lrkh~~~~v~~~Ak~Li~~WK~ 74 (309)
T 1pqv_S 38 EKLLRETKVGVEVNKFKKSTNVEISKLVKKMISSWKD 74 (309)
T ss_pred HHHHHhCChhHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 6778889988999999999999999999999998853
No 183
>3gjx_B Snurportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Homo sapiens} PDB: 3nby_B* 3nbz_B* 3nc0_B* 3gb8_B 2qna_B
Probab=27.73 E-value=13 Score=34.47 Aligned_cols=44 Identities=25% Similarity=0.394 Sum_probs=27.4
Q ss_pred CchHhhhhcCCCCCchHHhhhhhhHHHHHHHHhhhHHHHhhhhcc
Q 009636 8 KADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREG 52 (530)
Q Consensus 8 ~~~~~~~~~k~~~~~~e~~~~r~~~~~~lRk~~r~~~l~~~R~~~ 52 (530)
+...|...||+.....+..+ |++...+.-|++|.+.....|+..
T Consensus 28 a~HPR~sqyK~k~~~~~Q~~-RR~~~Le~QK~kR~d~~~haR~La 71 (365)
T 3gjx_B 28 APHPRLSQYKSKYSSLEQSE-RRRRLLELQKSKRLDYVNHARRLA 71 (365)
T ss_dssp SCCGGGCC---CTTCCSCCH-HHHHHHHHTCCCCSCHHHHHHHHH
T ss_pred CCCcchhhcccccchhhHHH-HHHHHHHHHHHHHHHHHHHhcccc
Confidence 45689999998444434333 334555666788888998888864
No 184
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=27.68 E-value=3.6e+02 Score=24.68 Aligned_cols=179 Identities=10% Similarity=0.098 Sum_probs=105.0
Q ss_pred hHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHH-hhc----C---CCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcH
Q 009636 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLN-LLS----G---NYKKSIKKEACWTVSNITAGNREQIQAVIEANII 372 (530)
Q Consensus 301 ~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~-lL~----~---~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i 372 (530)
++...++.+.......+.. ..+...++|.|+. +|. + ..+++|-.-.+.++..+...-.+.+..+++ .++
T Consensus 45 vKkeiLkLiet~i~~~~d~--~~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~-~VF 121 (321)
T 1w9c_A 45 VKRETLKLISGWVSRSNDP--QMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFD-AVF 121 (321)
T ss_dssp HHHHHHHHHHHHHTTCSCH--HHHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHH
Confidence 5556666666665544332 2233455666654 221 1 114556555555566665433344444444 456
Q ss_pred HHHHHHHhcC---chhHHHHHHHHHHHhhcCC-------CHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHH
Q 009636 373 GPLVALLENA---EFDIKKEAAWAISNATSGG-------THEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILK 442 (530)
Q Consensus 373 ~~L~~ll~~~---~~~v~~~a~~aL~nl~~~~-------~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~al~~l~~ll~ 442 (530)
..-++++... -|+.|.+-...|.++...+ ++++.+. +++.++-..++.+.++...++.++..++.
T Consensus 122 e~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fkl-----vidsiiWa~kH~~r~V~e~gL~il~~ll~ 196 (321)
T 1w9c_A 122 ECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKL-----VLDSIIWAFKHTMRNVADTGLQILFTLLQ 196 (321)
T ss_dssp HHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHH-----HHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHH-----HHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 6666777643 4788888777777776544 3333333 46677778899999999999999999987
Q ss_pred hhhhhhhcCCCCchhhHHHhhhhccHHHHH----HHhcCCCHHHHHHHHHHHHHhCC
Q 009636 443 VGEAEKNLGNTDVNVFTQMIDDAEGLEKIE----SLQTHDNAEIYEKSVKLLETYWL 495 (530)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~----~l~~~~~~~v~~~a~~il~~~~~ 495 (530)
...+.. .+...|-..-.++.+. .+.+.....-.+.-..+|.+.|.
T Consensus 197 n~~~~~--------~~~~~Fy~~fy~~il~~if~VlTDs~Hk~gF~~q~~iL~~lf~ 245 (321)
T 1w9c_A 197 NVAQEE--------AAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFN 245 (321)
T ss_dssp HHHHCH--------HHHHHHHHHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHH
T ss_pred HHhcCh--------HHHHHHHHHHHHHHHHHHHHHHhCchhhccHHHHHHHHHHHHH
Confidence 765311 1344443344444444 34555555556666777777774
No 185
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=26.88 E-value=86 Score=25.14 Aligned_cols=74 Identities=12% Similarity=-0.016 Sum_probs=52.3
Q ss_pred cHHHHHHHHhc-CchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHH-HHhccCCC---ChHHHHHHHHHHHHHHHhh
Q 009636 371 IIGPLVALLEN-AEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKP-LCDLLVCP---DPRIVTVCLEGLENILKVG 444 (530)
Q Consensus 371 ~i~~L~~ll~~-~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~-L~~lL~~~---~~~~~~~al~~l~~ll~~~ 444 (530)
++..|.+-+.. .++.++..|+..|-.++.++...+...+.+..++.. |..++... +..|+..++..+.......
T Consensus 54 A~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F 132 (152)
T 3rru_A 54 AVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQGF 132 (152)
T ss_dssp HHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHh
Confidence 45566666764 478888889999999999888777777666666653 66776532 3468888888777665443
No 186
>2g7o_A Protein TRAM; four helix bundle, tetramer, DNA binding protein; 1.40A {Escherichia coli} SCOP: a.241.1.1 PDB: 3d8a_A 2g9e_A
Probab=26.05 E-value=65 Score=21.77 Aligned_cols=20 Identities=25% Similarity=0.496 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHhCCCCCC
Q 009636 480 AEIYEKSVKLLETYWLDDED 499 (530)
Q Consensus 480 ~~v~~~a~~il~~~~~~~~~ 499 (530)
++|++.+..-+++||+++++
T Consensus 50 ~~Ir~~~~e~~~~FFpe~~~ 69 (70)
T 2g7o_A 50 EDIREKVSSEMERFFPKNDD 69 (70)
T ss_dssp HHHHHHHHHHHHHHSCSCTT
T ss_pred HHHHHHHHHHHHHhCccccC
Confidence 35678899999999987655
No 187
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=23.53 E-value=3.2e+02 Score=28.75 Aligned_cols=119 Identities=10% Similarity=0.050 Sum_probs=69.5
Q ss_pred hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcC--CCchhHHHHHHHHhhh
Q 009636 151 HTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG--QPKLSMLRNATWTLSN 228 (530)
Q Consensus 151 ~~~~~~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~--~~~~~~~~~a~~~L~~ 228 (530)
.++.+++ -+.|.+...+.+.+..+...+..+|.+||.-.|.+++.++. +++..+..-|.. -..+.-...++.+|..
T Consensus 332 ~~~~fV~-~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP-~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~ 409 (799)
T 1vsy_4 332 CHEEIVE-IFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYD-KILIDLYDTLADQFINSRHRIISSLKQFTR 409 (799)
T ss_dssp HHHHHHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHH-HHHHHHHHHHTTTTTTCHHHHHHHHHHHHT
T ss_pred HHHHHHH-HHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehH-HHHHHHHHHhccccccchhHHHHHHHHHHH
Confidence 3344443 23456666677888999999999999999877755555332 233334444422 2445555566677766
Q ss_pred hccCCCC--CChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 009636 229 FCRGKPQ--PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLS 271 (530)
Q Consensus 229 L~~~~~~--~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~ 271 (530)
+++.-.. .-......++..++.-+..+|+.-...++..+..++
T Consensus 410 ~~r~lv~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~ 454 (799)
T 1vsy_4 410 VIRFIVMDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIA 454 (799)
T ss_dssp THHHHTTSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHH
Confidence 6643211 111233455555666667778776666666665554
No 188
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=23.30 E-value=3e+02 Score=22.40 Aligned_cols=79 Identities=11% Similarity=0.090 Sum_probs=58.6
Q ss_pred chhhHHHhhcCchHHHHHhhcCCC-----chhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC--chhHHHH
Q 009636 317 DMQTQCVIEYQALPCLLNLLSGNY-----KKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKE 389 (530)
Q Consensus 317 ~~~~~~~~~~~~l~~L~~lL~~~~-----~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~ 389 (530)
......+++.|++..+-.+|..-. ...+|.....+|.++-. ....+..+|+-..++-+..+. .+..+..
T Consensus 66 ~~L~~~~ld~giL~~l~~WLePLpDgSLP~~~Ir~~lL~~L~~lPI----~~e~Lk~SglGkvV~~l~k~~~et~~nkrl 141 (170)
T 3nfq_A 66 ANLADTILDNNLLQSVRIWLEPLPDGSLPSFEIQKSLFAALNDLPV----KTEHLKESGLGRVVIFYTKSKRVEAQLARL 141 (170)
T ss_dssp GGGHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSCC----CHHHHHHHSHHHHHHHHHHCTTSCHHHHHH
T ss_pred HHHHHHHHHcchHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHCCC----CHHHHhhCCCCceeeehhcCCcccHHHHHH
Confidence 344567889999999999996421 45799999999998842 234677788877777666555 5778888
Q ss_pred HHHHHHHhhc
Q 009636 390 AAWAISNATS 399 (530)
Q Consensus 390 a~~aL~nl~~ 399 (530)
|-..+...+.
T Consensus 142 a~~Li~~WsR 151 (170)
T 3nfq_A 142 AEKLIAEWTR 151 (170)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHHH
Confidence 8888887765
No 189
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Probab=22.60 E-value=2.9e+02 Score=21.90 Aligned_cols=72 Identities=15% Similarity=0.159 Sum_probs=46.0
Q ss_pred hHHHHhccCC--CChHHHHHHHHHHHHHHHhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcC------CCHHHHHHH
Q 009636 415 IKPLCDLLVC--PDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTH------DNAEIYEKS 486 (530)
Q Consensus 415 i~~L~~lL~~--~~~~~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~------~~~~v~~~a 486 (530)
+..|-.-|.. .+...+..+|..|..|+..|+... +.........+..|.+++.. ....|+++|
T Consensus 61 m~~l~kRL~d~~k~WR~vyKaL~lleyLl~nGse~v---------v~~~r~~~~~I~~L~~F~y~d~~g~D~G~nVR~kA 131 (148)
T 1inz_A 61 MSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERV---------SQQCKENMYAVQTLKDFQYVDRDGKDQGVNVREKA 131 (148)
T ss_dssp HHHHHHGGGCCSSCTHHHHHHHHHHHHHHHTTCHHH---------HHHHHHTHHHHHHHHHCCCCCSSCCCCCHHHHHHH
T ss_pred HHHHHHHHccCCcchhHhhHHHHHHHHHHHhCCHHH---------HHHHHHhHHHHHhhcceeeeCCCCcCchHHHHHHH
Confidence 4455555544 467789999999999999886532 22223333345566654332 345789999
Q ss_pred HHHHHHhCC
Q 009636 487 VKLLETYWL 495 (530)
Q Consensus 487 ~~il~~~~~ 495 (530)
..+++-.-+
T Consensus 132 k~l~~LL~D 140 (148)
T 1inz_A 132 KQLVALLRD 140 (148)
T ss_dssp HHHHHHHTS
T ss_pred HHHHHHhCC
Confidence 999986543
No 190
>4g3b_A Alpha4F3D; alpha helix, de novo designed, fluorinated protein, coiled-C NOVO protein; HET: 6FL; 1.19A {Synthetic} PDB: 4g4l_A* 3twg_A*
Probab=22.10 E-value=87 Score=15.66 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=12.8
Q ss_pred CchHHhhhhhhHHHHHHHHhh
Q 009636 21 DADEGRRRREDNMVEIRKNKR 41 (530)
Q Consensus 21 ~~~e~~~~r~~~~~~lRk~~r 41 (530)
+++|..+.-+..+..+||.++
T Consensus 2 nade~ykeled~qerlrk~rk 22 (26)
T 4g3b_A 2 NADEXYKELEDXQERLRKXRK 22 (26)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHH
Confidence 345666666666666766554
No 191
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=20.84 E-value=3.7e+02 Score=22.48 Aligned_cols=128 Identities=14% Similarity=0.119 Sum_probs=78.4
Q ss_pred ChHHHHHhhc-----CCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCC---ChhHHHHHHHHHHHhccC
Q 009636 202 GLVPLLAQLN-----GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSN---DDEVLTDACWALSYLSDG 273 (530)
Q Consensus 202 ~i~~Ll~ll~-----~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~---d~~v~~~a~~~l~~l~~~ 273 (530)
.+|.++..+. .-.+.......+.....|..++.-.-......++|.++.++-.. ...++..|+..+..++..
T Consensus 41 LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~ 120 (196)
T 4atg_A 41 LVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDT 120 (196)
T ss_dssp THHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence 4555555442 22367778888888888888876555667788888887776432 237899999999998743
Q ss_pred ChHHHHHHHHhCcHHHHHHhhCCC--CchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhc
Q 009636 274 TNDKIQAVIEAGVFPRLAEFLMHP--SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLS 337 (530)
Q Consensus 274 ~~~~~~~~~~~~~l~~L~~lL~~~--~~~~~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~ 337 (530)
...... -+...++..+.+.+.++ +.....-|+..|..+.. ..+..-++|.+-.+.+
T Consensus 121 ~~~~y~-~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~-------~~vr~~llP~l~~~~~ 178 (196)
T 4atg_A 121 YSRSYK-TLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSK-------NVVNTVIREHAEEYKR 178 (196)
T ss_dssp HTTTST-THHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCH-------HHHHTHHHHHHHHHHH
T ss_pred hCccCc-hHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhHH-------HHHHHhhhcCHHHHHH
Confidence 211111 12234556666666554 34455667777666653 2333344566655554
Done!