BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009637
(530 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
Length = 432
Score = 198 bits (504), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 138/404 (34%), Positives = 185/404 (45%), Gaps = 82/404 (20%)
Query: 114 ASFVRYGTSRTNLNHEATGHSLVYDQLYPFEGLQNYTSGIIHHVRLTGLEPNNKYYYQCG 173
+S VRY + + A G Y NY+SG IHH + L+ N KYYY+ G
Sbjct: 54 SSAVRYWSEKNGRKRIAKGKMSTYRFF-------NYSSGFIHHTTIRKLKYNTKYYYEVG 106
Query: 174 DPSIPAMSDVYYFRTLPASGPQSYPKRIAIVGDLGLTYNTTCTINH--MSSNEPDLVLLV 231
+ + + F T P +G P ++GDLG ++++ T++H +S + VL V
Sbjct: 107 ---LRNTTRRFSFITPPQTG-LDVPYTFGLIGDLGQSFDSNTTLSHYELSPKKGQTVLFV 162
Query: 232 GDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQPRWDYWGRFMQNLVSKVPIMVVEGNHE 291
GD++YA+ Y P H+ RWD WGRF + V+ P + GNHE
Sbjct: 163 GDLSYADRY-----------------PNHDNV--RWDTWGRFTERSVAYQPWIWTAGNHE 203
Query: 292 IE-AQAGNQT--FVAYSSRFAFPSEESGSLSSFYYSFNAGGIHFIMLGAYISYDKSGHQY 348
IE A N+T F +S R+ P E S S S F+YS H I+L +Y +Y + QY
Sbjct: 204 IEFAPEINETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASAHIIVLSSYSAYGRGTPQY 263
Query: 349 KWLEKDLANVDRSVTPWLVATXXXXXXXXXXXXXREAECMRVEMEALLYSYGVDIVFNGH 408
WL+K+L V RS TPWL+ E E MR + EA Y VD+VF GH
Sbjct: 264 TWLKKELRKVKRSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGH 323
Query: 409 VHAYERSNRVFNYTL-----------DPCGPVHITIGDGGNLEKMSITHADEPGNCPEPS 457
VHAYERS RV N D PV+ITIGD GN + N +P
Sbjct: 324 VHAYERSERVSNIAYKITDGLCTPVKDQSAPVYITIGDAGNYGVID-------SNMIQP- 375
Query: 458 STPDPYMGGFCATNFTSGPAAGKFCWDRQPDYSAFRESSFGHGI 501
QP+YSAFRE+SFGHG+
Sbjct: 376 ----------------------------QPEYSAFREASFGHGM 391
>pdb|4DSY|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DSY|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DSY|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DSY|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DT2|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DT2|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DT2|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DT2|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DHL|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
pdb|4DHL|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
pdb|4DHL|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
pdb|4DHL|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
Length = 426
Score = 198 bits (504), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 138/404 (34%), Positives = 185/404 (45%), Gaps = 82/404 (20%)
Query: 114 ASFVRYGTSRTNLNHEATGHSLVYDQLYPFEGLQNYTSGIIHHVRLTGLEPNNKYYYQCG 173
+S VRY + + A G Y NY+SG IHH + L+ N KYYY+ G
Sbjct: 48 SSAVRYWSEKNGRKRIAKGKMSTYRFF-------NYSSGFIHHTTIRKLKYNTKYYYEVG 100
Query: 174 DPSIPAMSDVYYFRTLPASGPQSYPKRIAIVGDLGLTYNTTCTINH--MSSNEPDLVLLV 231
+ + + F T P +G P ++GDLG ++++ T++H +S + VL V
Sbjct: 101 ---LRNTTRRFSFITPPQTG-LDVPYTFGLIGDLGQSFDSNTTLSHYELSPKKGQTVLFV 156
Query: 232 GDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQPRWDYWGRFMQNLVSKVPIMVVEGNHE 291
GD++YA+ Y P H+ RWD WGRF + V+ P + GNHE
Sbjct: 157 GDLSYADRY-----------------PNHDNV--RWDTWGRFTERSVAYQPWIWTAGNHE 197
Query: 292 IE-AQAGNQT--FVAYSSRFAFPSEESGSLSSFYYSFNAGGIHFIMLGAYISYDKSGHQY 348
IE A N+T F +S R+ P E S S S F+YS H I+L +Y +Y + QY
Sbjct: 198 IEFAPEINETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASAHIIVLSSYSAYGRGTPQY 257
Query: 349 KWLEKDLANVDRSVTPWLVATXXXXXXXXXXXXXREAECMRVEMEALLYSYGVDIVFNGH 408
WL+K+L V RS TPWL+ E E MR + EA Y VD+VF GH
Sbjct: 258 TWLKKELRKVKRSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGH 317
Query: 409 VHAYERSNRVFNYTL-----------DPCGPVHITIGDGGNLEKMSITHADEPGNCPEPS 457
VHAYERS RV N D PV+ITIGD GN + N +P
Sbjct: 318 VHAYERSERVSNIAYKITNGLCTPVKDQSAPVYITIGDAGNYGVID-------SNMIQP- 369
Query: 458 STPDPYMGGFCATNFTSGPAAGKFCWDRQPDYSAFRESSFGHGI 501
QP+YSAFRE+SFGHG+
Sbjct: 370 ----------------------------QPEYSAFREASFGHGM 385
>pdb|2QFP|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFP|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFP|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFP|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFR|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase With Bound Sulfate
pdb|2QFR|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase With Bound Sulfate
Length = 424
Score = 198 bits (503), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 138/404 (34%), Positives = 185/404 (45%), Gaps = 82/404 (20%)
Query: 114 ASFVRYGTSRTNLNHEATGHSLVYDQLYPFEGLQNYTSGIIHHVRLTGLEPNNKYYYQCG 173
+S VRY + + A G Y NY+SG IHH + L+ N KYYY+ G
Sbjct: 46 SSAVRYWSEKNGRKRIAKGKMSTYRFF-------NYSSGFIHHTTIRKLKYNTKYYYEVG 98
Query: 174 DPSIPAMSDVYYFRTLPASGPQSYPKRIAIVGDLGLTYNTTCTINH--MSSNEPDLVLLV 231
+ + + F T P +G P ++GDLG ++++ T++H +S + VL V
Sbjct: 99 ---LRNTTRRFSFITPPQTG-LDVPYTFGLIGDLGQSFDSNTTLSHYELSPKKGQTVLFV 154
Query: 232 GDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQPRWDYWGRFMQNLVSKVPIMVVEGNHE 291
GD++YA+ Y P H+ RWD WGRF + V+ P + GNHE
Sbjct: 155 GDLSYADRY-----------------PNHDNV--RWDTWGRFTERSVAYQPWIWTAGNHE 195
Query: 292 IE-AQAGNQT--FVAYSSRFAFPSEESGSLSSFYYSFNAGGIHFIMLGAYISYDKSGHQY 348
IE A N+T F +S R+ P E S S S F+YS H I+L +Y +Y + QY
Sbjct: 196 IEFAPEINETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASAHIIVLSSYSAYGRGTPQY 255
Query: 349 KWLEKDLANVDRSVTPWLVATXXXXXXXXXXXXXREAECMRVEMEALLYSYGVDIVFNGH 408
WL+K+L V RS TPWL+ E E MR + EA Y VD+VF GH
Sbjct: 256 TWLKKELRKVKRSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGH 315
Query: 409 VHAYERSNRVFNYTL-----------DPCGPVHITIGDGGNLEKMSITHADEPGNCPEPS 457
VHAYERS RV N D PV+ITIGD GN + N +P
Sbjct: 316 VHAYERSERVSNIAYKITNGLCTPVKDQSAPVYITIGDAGNYGVID-------SNMIQP- 367
Query: 458 STPDPYMGGFCATNFTSGPAAGKFCWDRQPDYSAFRESSFGHGI 501
QP+YSAFRE+SFGHG+
Sbjct: 368 ----------------------------QPEYSAFREASFGHGM 383
>pdb|1XZW|A Chain A, Sweet Potato Purple Acid PhosphatasePHOSPHATE COMPLEX
pdb|1XZW|B Chain B, Sweet Potato Purple Acid PhosphatasePHOSPHATE COMPLEX
Length = 426
Score = 188 bits (478), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 140/443 (31%), Positives = 191/443 (43%), Gaps = 94/443 (21%)
Query: 76 PEQLSVSL-SFNHDSIWITWITGEFQIGDNIKPLDPKTVASFVRYGTSRTNLNHEATGHS 134
P+Q+ ++ + + I+W T P D K A+ V Y + + A G
Sbjct: 25 PQQVHITQGDYEGRGVIISWTT----------PYD-KAGANKVFYWSENSKSQKRAMGTV 73
Query: 135 LVYDQLYPFEGLQNYTSGIIHHVRLTGLEPNNKYYYQCGDPSIPAMSDVYYFRTLPASGP 194
+ Y NYTS IHH + LE + KYYY+ G ++F T P GP
Sbjct: 74 VTYKYY-------NYTSAFIHHCTIKDLEYDTKYYYRLG---FGDAKRQFWFVTPPKPGP 123
Query: 195 QSYPKRIAIVGDLGLTYNTTCTINHMSSNEP--DLVLLVGDVTYANLYLTNGTGSDCYSC 252
P ++GD+G T+++ T+ H N VL +GD++Y+N
Sbjct: 124 DV-PYVFGLIGDIGQTHDSNTTLTHYEQNSAKGQAVLFMGDLSYSN-------------- 168
Query: 253 SFSKTPIHETYQPRWDYWGRFMQNLVSKVPIMVVEGNHEIEAQ---AGNQTFVAYSSRFA 309
+ P H+ RWD WGRF + V+ P + GNHEI+ Q FV +++R+
Sbjct: 169 ---RWPNHDN--NRWDTWGRFSERSVAYQPWIWTAGNHEIDYAPDIGEYQPFVPFTNRYP 223
Query: 310 FPSEESGSLSSFYYSFNAGGIHFIMLGAYISYDKSGHQYKWLEKDLANVDRSVTPWLVAT 369
P E SGS +Y+ H I+L +Y + K QYKW +L V+RS TPWL+
Sbjct: 224 TPHEASGSGDPLWYAIKRASAHIIVLSSYSGFVKYSPQYKWFTSELEKVNRSETPWLIVL 283
Query: 370 XXXXXXXXXXXXXREAECMRVEMEALLYSYGVDIVFNGHVHAYERSNRVFNYTL------ 423
E E MR E Y VDIVF+GHVH+YERS RV N
Sbjct: 284 VHAPLYNSYEAHYMEGEAMRAIFEPYFVYYKVDIVFSGHVHSYERSERVSNVAYNIVNAK 343
Query: 424 -----DPCGPVHITIGDGGNLEKMSITHADEPGNCPEPSSTPDPYMGGFCATNFTSGPAA 478
D PV+ITIGDGGN E ++ S P
Sbjct: 344 CTPVSDESAPVYITIGDGGNSEGLA-------------SEMTQP---------------- 374
Query: 479 GKFCWDRQPDYSAFRESSFGHGI 501
QP YSAFRE+SFGHGI
Sbjct: 375 -------QPSYSAFREASFGHGI 390
>pdb|2YEQ|A Chain A, Structure Of Phod
pdb|2YEQ|B Chain B, Structure Of Phod
Length = 527
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 65/177 (36%), Gaps = 19/177 (10%)
Query: 156 HVRLTGLEPNNKYYYQCGDPSIPAMSDVYYFRTLPASGPQSYPKRIAIVGDLGLTYNTTC 215
HV GLEPN YYY+ + +S V +TLPA G A +
Sbjct: 76 HVEADGLEPNKVYYYRF--KTGHELSPVGKTKTLPAPGANVPQMTFAFASCQQYEHGYYT 133
Query: 216 TINHMSSNEPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQ--PRWDYWGRF 273
HM+ + DLV +GD Y G + Y H + + DY R
Sbjct: 134 AYKHMAKEKLDLVFHLGDYIYE-------YGPNEYVSKTGNVRTHNSAEIITLQDYRNRH 186
Query: 274 MQ-----NLV---SKVPIMVVEGNHEIEAQAGNQTFVAYSSRFAFPSEESGSLSSFY 322
Q NL + P +V +HE+E N+ S AF + + ++Y
Sbjct: 187 AQYRSDANLKAAHAAFPWVVTWDDHEVENNYANKIPEKGQSVEAFVLRRAAAYQAYY 243
>pdb|2WDC|A Chain A, Termus Thermophilus Sulfate Thiohydrolase Soxb In Complex
With Glycerol
pdb|2WDD|A Chain A, Termus Thermophilus Sulfate Thiohydrolase Soxb In Complex
With Sulfate
pdb|2WDE|A Chain A, Termus Thermophilus Sulfate Thiohydrolase Soxb In Complex
With Thiosulfate
pdb|2WDF|A Chain A, Termus Thermophilus Sulfate Thiohydrolase Soxb
Length = 562
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 12/76 (15%)
Query: 74 FEPEQLSVSLSFNHDSIWITWITGEFQIGDNIKPLDPKTVASF---VRYGTSRTNLNHEA 130
F P +S +L + D+++ TW + +G+ +K + P+ F VR+GT+
Sbjct: 361 FTPLAVSETLLYKRDTLYSTW---DQLVGEAVKAIYPEVEVVFSPAVRWGTTIL------ 411
Query: 131 TGHSLVYDQLYPFEGL 146
G ++ +D LY + G
Sbjct: 412 PGQAITWDHLYAYTGF 427
>pdb|4DN1|A Chain A, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup Member) From Agrobacterium Tumefaciens (Target
Efi-502088) With Bound Mg And Formate
pdb|4DN1|B Chain B, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup Member) From Agrobacterium Tumefaciens (Target
Efi-502088) With Bound Mg And Formate
Length = 408
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 7/110 (6%)
Query: 43 EPETVPYDASLRGNAVDIPDTDPLVRRRVTGFEPEQLSVSLSFNHDSIWITWITGEFQIG 102
+P VPY +LR V P+ + + T + SV + ++ + W G
Sbjct: 35 QPRKVPYLGALREGEVVNPNGYIVRKGNRTVYPTFDRSVLVRMTTEAGTVGW-------G 87
Query: 103 DNIKPLDPKTVASFVRYGTSRTNLNHEATGHSLVYDQLYPFEGLQNYTSG 152
+ + P VA+ + + + +A+ S VYD LY ++ YT G
Sbjct: 88 ETYGIVAPGAVAALINDLLAGFVIGRDASDPSAVYDDLYDMMRVRGYTGG 137
>pdb|2NQL|A Chain A, Crystal Structure Of A Member Of The Enolase Superfamily
From Agrobacterium Tumefaciens
pdb|2NQL|B Chain B, Crystal Structure Of A Member Of The Enolase Superfamily
From Agrobacterium Tumefaciens
Length = 388
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 7/110 (6%)
Query: 43 EPETVPYDASLRGNAVDIPDTDPLVRRRVTGFEPEQLSVSLSFNHDSIWITWITGEFQIG 102
+P VPY +LR V P+ + + T + SV + ++ + W G
Sbjct: 15 QPRKVPYLGALREGEVVNPNGYIVRKGNRTVYPTFDRSVLVRMTTEAGTVGW-------G 67
Query: 103 DNIKPLDPKTVASFVRYGTSRTNLNHEATGHSLVYDQLYPFEGLQNYTSG 152
+ + P VA+ + + + +A+ S VYD LY ++ YT G
Sbjct: 68 ETYGIVAPGAVAALINDLLAGFVIGRDASDPSAVYDDLYDMMRVRGYTGG 117
>pdb|2Y6X|A Chain A, Structure Of Psb27 From Thermosynechococcus Elongatus
Length = 113
Score = 29.6 bits (65), Expect = 4.0, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 32 ANIPSTLDGPFEPETVPYDASLRGNAVDIPDTDP 65
+N+P+ L G F +T+ +SLR A+ +P+ DP
Sbjct: 2 SNVPTGLTGNFREDTLALISSLR-EAIALPENDP 34
>pdb|4GEK|A Chain A, Crystal Structure Of Wild-Type Cmoa From E.Coli
pdb|4GEK|G Chain G, Crystal Structure Of Wild-Type Cmoa From E.Coli
Length = 261
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 282 PIMVVEGN-HEIEAQAGNQTFVAYSSRFAFPSEESGSLSSFYYSFNAGG 329
P+ V+EG+ +I + + + ++ +F PSE L Y N GG
Sbjct: 124 PVDVIEGDIRDIAIENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGG 172
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,876,146
Number of Sequences: 62578
Number of extensions: 736017
Number of successful extensions: 1594
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1565
Number of HSP's gapped (non-prelim): 17
length of query: 530
length of database: 14,973,337
effective HSP length: 103
effective length of query: 427
effective length of database: 8,527,803
effective search space: 3641371881
effective search space used: 3641371881
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)