Query 009637
Match_columns 530
No_of_seqs 494 out of 2744
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 15:31:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009637.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009637hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1378 Purple acid phosphatas 100.0 5.8E-84 1.3E-88 663.4 36.8 410 34-530 8-435 (452)
2 PLN02533 probable purple acid 100.0 3.4E-79 7.3E-84 647.8 45.0 373 72-530 40-416 (427)
3 cd00839 MPP_PAPs purple acid p 100.0 1.7E-44 3.7E-49 366.7 27.5 264 197-518 3-282 (294)
4 cd07378 MPP_ACP5 Homo sapiens 100.0 4.6E-31 9.9E-36 266.0 24.5 243 199-516 1-274 (277)
5 PTZ00422 glideosome-associated 100.0 2E-30 4.3E-35 267.5 25.2 238 198-515 26-314 (394)
6 cd07395 MPP_CSTP1 Homo sapiens 100.0 2E-26 4.3E-31 230.6 24.3 204 198-438 4-236 (262)
7 PF09423 PhoD: PhoD-like phosp 99.9 1.2E-23 2.7E-28 226.4 29.1 261 151-416 60-381 (453)
8 cd07402 MPP_GpdQ Enterobacter 99.9 3.5E-23 7.6E-28 204.0 21.3 192 200-439 1-213 (240)
9 cd07396 MPP_Nbla03831 Homo sap 99.9 2.8E-23 6.1E-28 208.5 17.7 198 199-439 1-247 (267)
10 COG3540 PhoD Phosphodiesterase 99.9 1.9E-22 4E-27 207.1 20.0 278 114-414 71-420 (522)
11 KOG2679 Purple (tartrate-resis 99.9 2.2E-21 4.8E-26 186.1 19.4 201 198-437 43-274 (336)
12 cd07401 MPP_TMEM62_N Homo sapi 99.9 4.9E-21 1.1E-25 191.0 21.3 193 201-418 2-216 (256)
13 PRK11148 cyclic 3',5'-adenosin 99.9 2.5E-20 5.3E-25 188.0 24.6 191 198-438 14-225 (275)
14 cd07399 MPP_YvnB Bacillus subt 99.8 2.3E-19 4.9E-24 174.3 15.1 150 199-417 1-166 (214)
15 cd00842 MPP_ASMase acid sphing 99.8 3.5E-18 7.5E-23 174.1 17.3 192 203-415 42-264 (296)
16 PF00149 Metallophos: Calcineu 99.7 1.1E-17 2.5E-22 152.1 9.7 188 199-412 1-200 (200)
17 cd08163 MPP_Cdc1 Saccharomyces 99.7 9.3E-16 2E-20 152.8 18.1 170 214-416 34-232 (257)
18 cd07393 MPP_DR1119 Deinococcus 99.7 3.4E-15 7.3E-20 146.9 17.2 191 201-436 1-226 (232)
19 cd07392 MPP_PAE1087 Pyrobaculu 99.6 4.4E-15 9.4E-20 140.2 16.6 168 201-414 1-175 (188)
20 cd07383 MPP_Dcr2 Saccharomyces 99.6 2.7E-15 5.9E-20 144.0 15.0 150 198-416 2-180 (199)
21 TIGR03729 acc_ester putative p 99.6 2.6E-15 5.7E-20 148.3 15.2 176 200-413 1-222 (239)
22 TIGR03767 P_acnes_RR metalloph 99.6 4.5E-15 9.8E-20 156.1 16.7 94 319-415 290-395 (496)
23 COG1409 Icc Predicted phosphoh 99.6 6.1E-14 1.3E-18 141.6 17.1 179 199-412 1-193 (301)
24 cd07400 MPP_YydB Bacillus subt 99.5 7.5E-14 1.6E-18 126.6 13.7 132 201-435 1-144 (144)
25 cd07385 MPP_YkuE_C Bacillus su 99.5 3.5E-13 7.5E-18 131.2 15.2 187 198-438 1-206 (223)
26 cd07404 MPP_MS158 Microscilla 99.5 1.4E-13 3.1E-18 128.1 11.0 145 201-415 1-152 (166)
27 cd07388 MPP_Tt1561 Thermus the 99.5 3.4E-12 7.5E-17 124.2 19.0 172 198-410 4-189 (224)
28 cd00840 MPP_Mre11_N Mre11 nucl 99.4 1.1E-12 2.3E-17 127.4 14.0 185 200-415 1-204 (223)
29 TIGR03768 RPA4764 metallophosp 99.4 3.5E-12 7.5E-17 133.2 17.0 94 319-413 291-412 (492)
30 PRK11340 phosphodiesterase Yae 99.4 7.5E-12 1.6E-16 126.0 18.4 164 198-418 49-220 (271)
31 PF14008 Metallophos_C: Iron/z 99.4 1.1E-12 2.4E-17 101.7 5.6 58 426-523 1-58 (62)
32 cd00838 MPP_superfamily metall 99.3 1.9E-11 4.1E-16 106.9 12.3 128 202-434 1-131 (131)
33 KOG1432 Predicted DNA repair e 99.2 4.9E-10 1.1E-14 112.0 19.1 211 198-440 53-332 (379)
34 cd07389 MPP_PhoD Bacillus subt 99.2 3E-10 6.5E-15 111.2 15.6 178 200-415 1-207 (228)
35 cd07397 MPP_DevT Myxococcus xa 99.2 6.1E-10 1.3E-14 108.9 17.4 195 199-434 1-232 (238)
36 cd07379 MPP_239FB Homo sapiens 99.2 1.8E-10 3.9E-15 103.6 11.6 133 200-433 1-134 (135)
37 PF12850 Metallophos_2: Calcin 99.1 9.6E-10 2.1E-14 100.4 12.9 139 199-439 1-140 (156)
38 COG1408 Predicted phosphohydro 99.1 1E-09 2.2E-14 110.7 13.0 74 198-295 44-120 (284)
39 PRK05340 UDP-2,3-diacylglucosa 99.0 3.3E-09 7.3E-14 104.9 13.8 198 199-438 1-221 (241)
40 TIGR00040 yfcE phosphoesterase 99.0 2.2E-08 4.8E-13 92.4 15.2 37 199-235 1-39 (158)
41 cd08166 MPP_Cdc1_like_1 unchar 98.9 8E-09 1.7E-13 98.1 10.6 110 221-416 39-151 (195)
42 KOG3770 Acid sphingomyelinase 98.9 3.9E-08 8.5E-13 105.3 16.6 179 215-415 199-407 (577)
43 cd08165 MPP_MPPE1 human MPPE1 98.9 1.1E-08 2.4E-13 94.4 10.9 52 221-293 35-89 (156)
44 cd07394 MPP_Vps29 Homo sapiens 98.9 3E-07 6.6E-12 86.8 19.3 40 391-438 97-136 (178)
45 cd07403 MPP_TTHA0053 Thermus t 98.9 2E-08 4.2E-13 89.8 10.6 49 366-415 58-106 (129)
46 cd07384 MPP_Cdc1_like Saccharo 98.8 3.3E-08 7.2E-13 92.7 12.5 49 367-437 119-167 (171)
47 cd00841 MPP_YfcE Escherichia c 98.8 1.6E-08 3.5E-13 92.8 9.5 57 366-439 77-133 (155)
48 TIGR01854 lipid_A_lpxH UDP-2,3 98.8 1.9E-07 4.1E-12 91.9 16.8 185 202-438 2-219 (231)
49 COG2129 Predicted phosphoester 98.8 1.2E-07 2.6E-12 90.7 14.5 191 198-435 3-203 (226)
50 PF14582 Metallophos_3: Metall 98.8 1E-07 2.3E-12 90.8 13.9 193 198-413 5-219 (255)
51 COG1768 Predicted phosphohydro 98.7 2.7E-07 5.9E-12 84.5 13.2 64 361-435 156-219 (230)
52 cd07398 MPP_YbbF-LpxH Escheric 98.7 1.1E-07 2.5E-12 92.0 10.9 197 202-435 1-216 (217)
53 PRK09453 phosphodiesterase; Pr 98.7 3.9E-07 8.5E-12 86.2 14.0 75 199-293 1-76 (182)
54 cd00845 MPP_UshA_N_like Escher 98.7 3.3E-07 7.2E-12 91.1 13.6 191 199-436 1-224 (252)
55 cd07410 MPP_CpdB_N Escherichia 98.6 1.4E-06 3E-11 88.1 16.5 206 199-438 1-249 (277)
56 cd07406 MPP_CG11883_N Drosophi 98.6 3.3E-06 7.1E-11 84.5 18.6 191 199-438 1-225 (257)
57 cd08164 MPP_Ted1 Saccharomyces 98.6 1.5E-07 3.1E-12 89.4 7.4 32 367-416 129-160 (193)
58 TIGR00583 mre11 DNA repair pro 98.5 7.2E-07 1.6E-11 94.4 12.9 40 198-237 3-55 (405)
59 COG0420 SbcD DNA repair exonuc 98.4 2.6E-06 5.6E-11 90.4 12.4 74 199-294 1-89 (390)
60 cd00844 MPP_Dbr1_N Dbr1 RNA la 98.4 1.2E-05 2.6E-10 80.4 15.6 188 201-417 1-234 (262)
61 cd07411 MPP_SoxB_N Thermus the 98.3 9.3E-06 2E-10 81.5 14.6 178 215-439 40-241 (264)
62 cd07408 MPP_SA0022_N Staphyloc 98.3 1.2E-05 2.5E-10 80.4 14.2 182 199-415 1-216 (257)
63 cd07382 MPP_DR1281 Deinococcus 98.3 3.5E-05 7.6E-10 76.7 16.9 192 200-441 1-203 (255)
64 cd07412 MPP_YhcR_N Bacillus su 98.3 1.8E-05 4E-10 80.4 15.2 85 349-440 178-264 (288)
65 COG0622 Predicted phosphoester 98.2 2.8E-05 6.2E-10 72.7 13.6 137 199-438 2-139 (172)
66 cd07407 MPP_YHR202W_N Saccharo 98.2 0.00011 2.3E-09 74.6 18.8 203 198-441 5-253 (282)
67 TIGR00282 metallophosphoestera 98.2 0.00011 2.3E-09 73.6 18.4 194 199-441 1-206 (266)
68 COG2908 Uncharacterized protei 98.2 3.2E-05 7E-10 74.9 13.9 193 203-441 2-219 (237)
69 PRK04036 DNA polymerase II sma 98.2 2.6E-05 5.6E-10 85.3 14.7 202 197-436 242-468 (504)
70 cd07409 MPP_CD73_N CD73 ecto-5 98.1 4.1E-05 8.8E-10 77.6 14.4 157 216-413 40-219 (281)
71 PRK09419 bifunctional 2',3'-cy 98.0 0.00016 3.5E-09 86.9 18.4 184 197-413 659-883 (1163)
72 TIGR00619 sbcd exonuclease Sbc 98.0 1.7E-05 3.7E-10 79.1 8.6 73 199-293 1-88 (253)
73 cd07386 MPP_DNA_pol_II_small_a 98.0 0.00012 2.6E-09 72.5 14.4 197 202-436 2-219 (243)
74 cd07424 MPP_PrpA_PrpB PrpA and 97.9 1.7E-05 3.7E-10 76.6 6.8 37 200-236 2-40 (207)
75 cd07405 MPP_UshA_N Escherichia 97.9 0.00026 5.7E-09 71.9 15.3 188 199-414 1-223 (285)
76 KOG3662 Cell division control 97.9 0.00011 2.3E-09 76.9 12.2 113 198-341 48-184 (410)
77 cd07390 MPP_AQ1575 Aquifex aeo 97.9 9.3E-05 2E-09 69.1 10.6 41 224-293 42-82 (168)
78 PRK10966 exonuclease subunit S 97.8 5.1E-05 1.1E-09 80.8 9.0 73 199-293 1-87 (407)
79 PHA02546 47 endonuclease subun 97.8 6.3E-05 1.4E-09 78.3 8.4 74 199-293 1-89 (340)
80 cd07425 MPP_Shelphs Shewanella 97.8 5.5E-05 1.2E-09 73.2 7.3 24 391-414 158-181 (208)
81 COG0737 UshA 5'-nucleotidase/2 97.7 0.00082 1.8E-08 74.0 16.3 185 197-412 25-247 (517)
82 PRK11439 pphA serine/threonine 97.7 4.2E-05 9E-10 74.6 5.3 37 200-236 18-56 (218)
83 TIGR01530 nadN NAD pyrophospha 97.6 0.0013 2.7E-08 73.1 15.5 114 283-413 84-219 (550)
84 PRK09558 ushA bifunctional UDP 97.6 0.0012 2.5E-08 73.4 14.6 186 197-413 33-258 (551)
85 cd07380 MPP_CWF19_N Schizosacc 97.5 0.0003 6.6E-09 64.4 7.6 50 366-415 71-126 (150)
86 KOG2863 RNA lariat debranching 97.4 0.0013 2.9E-08 66.7 10.9 182 199-411 1-229 (456)
87 cd08162 MPP_PhoA_N Synechococc 97.3 0.0043 9.4E-08 63.9 14.3 38 199-236 1-50 (313)
88 cd07391 MPP_PF1019 Pyrococcus 97.3 0.00047 1E-08 64.6 6.2 52 220-293 37-88 (172)
89 COG4186 Predicted phosphoester 97.2 0.0069 1.5E-07 54.9 11.9 38 366-411 110-147 (186)
90 PRK11907 bifunctional 2',3'-cy 97.2 0.014 3E-07 67.1 17.6 60 349-413 296-355 (814)
91 PHA02239 putative protein phos 97.1 0.0012 2.7E-08 65.0 7.0 70 199-293 1-73 (235)
92 PRK09419 bifunctional 2',3'-cy 97.1 0.011 2.3E-07 71.4 16.0 49 361-414 233-282 (1163)
93 PRK00166 apaH diadenosine tetr 96.9 0.0015 3.3E-08 65.9 5.5 67 199-293 1-69 (275)
94 TIGR00024 SbcD_rel_arch putati 96.8 0.0031 6.7E-08 61.8 7.3 70 199-293 15-102 (225)
95 PRK09418 bifunctional 2',3'-cy 96.8 0.04 8.8E-07 63.2 17.2 48 361-414 243-291 (780)
96 cd07387 MPP_PolD2_C PolD2 (DNA 96.7 0.038 8.2E-07 55.2 13.7 191 201-415 2-218 (257)
97 COG1311 HYS2 Archaeal DNA poly 96.6 0.042 9E-07 58.6 14.0 89 197-295 224-323 (481)
98 TIGR01390 CycNucDiestase 2',3' 96.6 0.051 1.1E-06 61.3 15.7 46 361-412 194-240 (626)
99 PRK09420 cpdB bifunctional 2', 96.6 0.061 1.3E-06 60.9 16.2 57 350-412 206-263 (649)
100 cd07423 MPP_PrpE Bacillus subt 96.6 0.004 8.7E-08 61.3 6.0 68 200-293 2-80 (234)
101 PRK13625 bis(5'-nucleosyl)-tet 96.4 0.0083 1.8E-07 59.6 6.9 68 199-292 1-78 (245)
102 PF13277 YmdB: YmdB-like prote 96.3 0.085 1.8E-06 52.0 13.4 190 202-441 1-201 (253)
103 PRK09968 serine/threonine-spec 96.2 0.006 1.3E-07 59.5 5.1 37 200-236 16-54 (218)
104 cd07413 MPP_PA3087 Pseudomonas 95.9 0.013 2.8E-07 57.3 5.5 67 201-293 1-76 (222)
105 COG5555 Cytolysin, a secreted 95.9 0.012 2.7E-07 58.1 5.1 141 275-416 165-338 (392)
106 cd07381 MPP_CapA CapA and rela 95.8 0.15 3.2E-06 50.3 12.9 135 271-415 70-222 (239)
107 cd07422 MPP_ApaH Escherichia c 95.8 0.013 2.7E-07 58.7 5.1 64 202-293 2-67 (257)
108 cd00144 MPP_PPP_family phospho 95.8 0.013 2.7E-07 57.0 4.9 65 203-293 2-68 (225)
109 PF00041 fn3: Fibronectin type 95.7 0.043 9.4E-07 43.8 7.0 76 75-176 2-77 (85)
110 cd07421 MPP_Rhilphs Rhilph pho 95.6 0.021 4.5E-07 57.8 5.9 37 200-236 3-46 (304)
111 COG1692 Calcineurin-like phosp 95.6 0.36 7.9E-06 47.2 13.9 190 199-438 1-202 (266)
112 smart00854 PGA_cap Bacterial c 95.3 0.42 9E-06 47.1 14.0 136 270-415 65-220 (239)
113 TIGR00668 apaH bis(5'-nucleosy 95.3 0.025 5.4E-07 57.0 5.1 37 200-236 2-40 (279)
114 COG1407 Predicted ICC-like pho 95.1 0.056 1.2E-06 52.8 6.7 73 199-293 20-110 (235)
115 PF09587 PGA_cap: Bacterial ca 93.5 1.4 3.1E-05 43.6 13.1 128 280-415 75-231 (250)
116 KOG4419 5' nucleotidase [Nucle 93.3 0.77 1.7E-05 50.3 11.3 58 345-413 211-270 (602)
117 cd07416 MPP_PP2B PP2B, metallo 93.1 0.17 3.7E-06 51.9 5.9 23 389-411 222-244 (305)
118 smart00156 PP2Ac Protein phosp 92.3 0.29 6.2E-06 49.4 6.3 37 200-236 29-66 (271)
119 cd07420 MPP_RdgC Drosophila me 92.0 0.34 7.4E-06 50.0 6.4 23 389-411 253-275 (321)
120 cd07415 MPP_PP2A_PP4_PP6 PP2A, 91.5 0.32 6.9E-06 49.4 5.5 23 389-411 214-236 (285)
121 cd07414 MPP_PP1_PPKL PP1, PPKL 91.2 0.36 7.8E-06 49.3 5.6 23 389-411 222-244 (293)
122 KOG2310 DNA repair exonuclease 91.2 0.51 1.1E-05 50.9 6.8 41 198-238 13-66 (646)
123 PTZ00239 serine/threonine prot 90.7 0.44 9.5E-06 48.8 5.7 23 389-411 215-237 (303)
124 cd07418 MPP_PP7 PP7, metalloph 90.7 0.4 8.6E-06 50.5 5.4 21 389-409 273-293 (377)
125 PTZ00480 serine/threonine-prot 89.9 0.46 1E-05 49.0 5.1 23 389-411 231-253 (320)
126 PTZ00244 serine/threonine-prot 89.6 0.52 1.1E-05 48.1 5.1 23 389-411 224-246 (294)
127 cd07417 MPP_PP5_C PP5, C-termi 87.2 1.7 3.7E-05 44.8 7.1 23 389-411 233-255 (316)
128 KOG4221 Receptor mediating net 86.6 2.5 5.4E-05 50.0 8.5 95 71-190 614-712 (1381)
129 cd07419 MPP_Bsu1_C Arabidopsis 86.1 1.7 3.7E-05 44.7 6.4 21 389-409 242-262 (311)
130 KOG0196 Tyrosine kinase, EPH ( 85.3 6.5 0.00014 44.8 10.7 38 154-191 497-537 (996)
131 cd00063 FN3 Fibronectin type 3 84.3 11 0.00024 29.0 9.3 22 154-175 56-77 (93)
132 KOG3325 Membrane coat complex 81.3 2 4.3E-05 38.9 3.9 41 390-438 97-137 (183)
133 PF04042 DNA_pol_E_B: DNA poly 80.2 0.89 1.9E-05 43.6 1.5 83 201-295 1-93 (209)
134 smart00060 FN3 Fibronectin typ 78.0 14 0.00031 27.4 7.6 22 154-175 56-77 (83)
135 KOG3513 Neural cell adhesion m 71.9 20 0.00044 42.4 9.7 92 75-191 822-916 (1051)
136 PTZ00235 DNA polymerase epsilo 64.4 47 0.001 33.8 9.4 80 198-293 27-122 (291)
137 PF02402 Lysis_col: Lysis prot 63.5 4.1 8.8E-05 28.9 1.2 31 11-41 1-31 (46)
138 KOG3947 Phosphoesterases [Gene 63.4 16 0.00034 36.7 5.7 31 199-235 62-93 (305)
139 KOG4221 Receptor mediating net 58.0 1.1E+02 0.0025 36.9 12.1 37 154-190 573-612 (1381)
140 KOG4258 Insulin/growth factor 56.3 48 0.001 38.4 8.5 123 74-208 487-624 (1025)
141 PF01108 Tissue_fac: Tissue fa 44.3 1.1E+02 0.0025 25.7 7.4 75 75-176 24-100 (107)
142 PF09403 FadA: Adhesion protei 39.4 9.9 0.00021 33.7 0.0 20 11-30 1-20 (126)
143 KOG0374 Serine/threonine speci 38.3 32 0.00069 35.8 3.5 23 389-411 233-255 (331)
144 PF07353 Uroplakin_II: Uroplak 38.1 35 0.00077 31.3 3.3 38 154-191 101-140 (184)
145 KOG0372 Serine/threonine speci 36.2 65 0.0014 31.9 5.0 34 201-236 45-81 (303)
146 cd02852 Isoamylase_N_term Isoa 31.5 57 0.0012 28.1 3.6 23 152-174 48-70 (119)
147 KOG0371 Serine/threonine prote 30.9 55 0.0012 32.7 3.6 34 201-236 62-98 (319)
148 COG3065 Slp Starvation-inducib 30.2 34 0.00073 32.1 1.9 31 9-42 3-34 (191)
149 cd02856 Glycogen_debranching_e 30.1 64 0.0014 27.1 3.6 23 152-174 44-66 (103)
150 PRK13859 type IV secretion sys 29.4 51 0.0011 24.3 2.3 15 34-48 20-36 (55)
151 PF08194 DIM: DIM protein; In 28.7 39 0.00086 23.1 1.5 17 11-27 1-17 (36)
152 cd02860 Pullulanase_N_term Pul 27.5 71 0.0015 26.6 3.4 24 152-175 46-69 (100)
153 PF07172 GRP: Glycine rich pro 27.5 40 0.00087 28.4 1.8 9 14-22 5-13 (95)
154 PRK09810 entericidin A; Provis 26.8 38 0.00082 23.9 1.2 18 11-28 2-19 (41)
155 cd02853 MTHase_N_term Maltooli 26.7 76 0.0016 25.5 3.3 21 153-174 40-60 (85)
156 TIGR00156 conserved hypothetic 25.5 67 0.0015 28.5 2.9 19 11-30 1-19 (126)
157 PF09294 Interfer-bind: Interf 23.8 69 0.0015 26.6 2.6 20 155-174 67-86 (106)
158 PRK09968 serine/threonine-spec 23.1 85 0.0018 30.3 3.4 29 399-435 178-206 (218)
159 KOG0373 Serine/threonine speci 23.1 95 0.0021 30.3 3.6 34 201-236 48-84 (306)
160 COG2248 Predicted hydrolase (m 23.0 2.4E+02 0.0053 28.2 6.4 75 198-293 176-250 (304)
161 PRK10301 hypothetical protein; 22.3 1.8E+02 0.0039 25.6 5.0 10 76-85 45-54 (124)
162 PRK10301 hypothetical protein; 22.0 5.4E+02 0.012 22.5 10.9 35 153-187 86-122 (124)
163 PF08139 LPAM_1: Prokaryotic m 21.8 44 0.00096 20.9 0.7 17 11-28 7-23 (25)
No 1
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.8e-84 Score=663.36 Aligned_cols=410 Identities=39% Similarity=0.636 Sum_probs=356.1
Q ss_pred CCCCCCCCCCccccCCCccCCCCCCCCCCCCCcccccCCCCCCceeEEeecCCCCeEEEEEEcCCCccCCCCCCCCCCCC
Q 009637 34 IPSTLDGPFEPETVPYDASLRGNAVDIPDTDPLVRRRVTGFEPEQLSVSLSFNHDSIWITWITGEFQIGDNIKPLDPKTV 113 (530)
Q Consensus 34 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~P~qi~l~~~~~~~~m~V~W~T~~~~~g~~~~~~~p~~~ 113 (530)
.+....|+..+.++++.+++.-....++...|.+. +.||||||++++..++|+|+|.|.+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~peQvhlS~~~~~~~m~VswvT~~~~------------- 69 (452)
T KOG1378|consen 8 QSEINPKHTLHDINPLPGTLHLLSESEQLTFPSVV-----NSPEQVHLSFTDNLNEMRVSWVTGDGE------------- 69 (452)
T ss_pred eeeccCCCccccccccCcccccccccccccCcccC-----CCCCeEEEeccCCCCcEEEEEeCCCCC-------------
Confidence 45667888889999999998888888888777555 559999999999889999999998752
Q ss_pred ccEEEEecCCCCcceE-EEEEEEEeeeccccCCccccccCeEEEEEeCCCCCCCEEEEEEeeCCCCCCCceeEEEcCCCC
Q 009637 114 ASFVRYGTSRTNLNHE-ATGHSLVYDQLYPFEGLQNYTSGIIHHVRLTGLEPNNKYYYQCGDPSIPAMSDVYYFRTLPAS 192 (530)
Q Consensus 114 ~~~V~yg~~~~~~~~~-a~g~~~~y~~~~~~~g~~~~~~~~~h~v~l~gL~P~T~Y~Yrvg~~~~~~~S~~~~F~T~p~~ 192 (530)
.++|+||+........ ++|.+..+.+.|.. -+|++|++|+|+|++|+|+|+||||||++. .||++|+|+|+|.
T Consensus 70 ~~~V~Yg~~~~~~~~~~~~~~~~~~~~~y~~---~~~~sg~ih~~~~~~L~~~t~YyY~~Gs~~--~wS~~f~F~t~p~- 143 (452)
T KOG1378|consen 70 ENVVRYGEVKDKLDNSAARGMTEAWTDGYAN---GWRDSGYIHDAVMKNLEPNTRYYYQVGSDL--KWSEIFSFKTPPG- 143 (452)
T ss_pred CceEEEeecCCCccccccccceEEEeccccc---ccceeeeEeeeeecCCCCCceEEEEeCCCC--CcccceEeECCCC-
Confidence 3799999876664332 35666665544332 247899999999999999999999999886 6999999999982
Q ss_pred CCCCCCeEEEEEccCCCCCChHHHHHHHHhCC-CCEEEEcCccccccccccCCCCCcccccCCCCCCccccch-HHHHHH
Q 009637 193 GPQSYPKRIAIVGDLGLTYNTTCTINHMSSNE-PDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQ-PRWDYW 270 (530)
Q Consensus 193 ~~~~~~~rf~v~gD~g~~~~~~~~~~~l~~~~-pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~-~~wd~~ 270 (530)
+..|.+|+++||+|.+.....++....++. +|+|||+|||+||+.+ + .+||.|
T Consensus 144 --~~~~~~~~i~GDlG~~~~~~s~~~~~~~~~k~d~vlhiGDlsYa~~~-----------------------~n~~wD~f 198 (452)
T KOG1378|consen 144 --QDSPTRAAIFGDMGCTEPYTSTLRNQEENLKPDAVLHIGDLSYAMGY-----------------------SNWQWDEF 198 (452)
T ss_pred --ccCceeEEEEccccccccccchHhHHhcccCCcEEEEecchhhcCCC-----------------------CccchHHH
Confidence 224899999999999977777777777665 9999999999998753 2 589999
Q ss_pred HHHHHHhhhcCCeEEccCCccccccccccchHHHhhhcCCCCCCCCCCCcceEEEEcCcEEEEEEcccccC--CCCHHHH
Q 009637 271 GRFMQNLVSKVPIMVVEGNHEIEAQAGNQTFVAYSSRFAFPSEESGSLSSFYYSFNAGGIHFIMLGAYISY--DKSGHQY 348 (530)
Q Consensus 271 ~~~l~~l~~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~Ldt~~~~--~~~~~Q~ 348 (530)
.++++++++.+|+|++.||||+...... .|..|..||.||.+++.+..++||||++|++|||+|+|+.++ ....+|+
T Consensus 199 ~r~vEp~As~vPymv~~GNHE~d~~~~~-~F~~y~~Rf~mP~~~s~s~~~l~YSfd~G~vhfv~lsse~~~~~~~~~~QY 277 (452)
T KOG1378|consen 199 GRQVEPIASYVPYMVCSGNHEIDWPPQP-CFVPYSARFNMPGNSSESDSNLYYSFDVGGVHFVVLSTETYYNFLKGTAQY 277 (452)
T ss_pred HhhhhhhhccCceEEecccccccCCCcc-cccccceeeccCCCcCCCCCceeEEEeeccEEEEEEeccccccccccchHH
Confidence 9999999999999999999999865443 799999999999998888889999999999999999999875 3578999
Q ss_pred HHHHHHHhcccCCCCCEEEEEeCCCCccCCCC-CCchhH--HHHHHHHHHHHHcCCcEEEEccccCceeeeecccCcc--
Q 009637 349 KWLEKDLANVDRSVTPWLVATWHPPWYSSYSS-HYREAE--CMRVEMEALLYSYGVDIVFNGHVHAYERSNRVFNYTL-- 423 (530)
Q Consensus 349 ~WL~~~L~~~~r~~~pwvIv~~H~P~y~s~~~-~~~~~~--~~r~~l~~ll~k~~VdlvlsGH~H~yeR~~pv~~~~~-- 423 (530)
+||+++|++++|+++||+||+.|+|||+++.. ++++.+ .+|+.||+||.+++||+||.||+|+|||++|++|.++
T Consensus 278 ~WL~~dL~~v~r~~tPWlIv~~HrP~Y~S~~~~~~reG~~~~~~~~LE~l~~~~~VDvvf~GHvH~YER~~piyn~~~~~ 357 (452)
T KOG1378|consen 278 QWLERDLASVDRKKTPWLIVQGHRPMYCSSNDAHYREGEFESMREGLEPLFVKYKVDVVFWGHVHRYERFCPIYNNTCGT 357 (452)
T ss_pred HHHHHHHHHhcccCCCeEEEEecccceecCCchhhccCcchhhHHHHHHHHHHhceeEEEeccceehhccchhhcceeec
Confidence 99999999999887999999999999999875 666655 8899999999999999999999999999999999887
Q ss_pred --------CCCCcEEEEeCCCccccccccccCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCccceecC
Q 009637 424 --------DPCGPVHITIGDGGNLEKMSITHADEPGNCPEPSSTPDPYMGGFCATNFTSGPAAGKFCWDRQPDYSAFRES 495 (530)
Q Consensus 424 --------~~~G~vyIv~G~gG~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~wsa~r~~ 495 (530)
+++||+||++|+||++|+.+..+ .+||+|||||+.
T Consensus 358 ~~~~~~~~d~~aPvyI~~G~~G~~e~~~~~~-------------------------------------~~~p~~Sa~R~~ 400 (452)
T KOG1378|consen 358 GWGPVHLVDGMAPIYITVGDGGNHEHLDPFS-------------------------------------SPQPEWSAFREG 400 (452)
T ss_pred cCCcccccCCCCCEEEEEccCCcccccCccc-------------------------------------CCCCcccccccc
Confidence 89999999999999999987421 268999999999
Q ss_pred CcceEEEEEeecceeeeeeeeccCCCceeeccccC
Q 009637 496 SFGHGILEVLSLSLLFVPLFLQPKFNTMVTHGLFL 530 (530)
Q Consensus 496 ~~G~~~l~v~n~t~~~~~~~~~~~~~~~~~~~~~~ 530 (530)
+|||++|+++|.||++|++......+-++.+.+||
T Consensus 401 dfG~~~L~v~N~TH~~~~~~~~~d~~g~~~D~fwl 435 (452)
T KOG1378|consen 401 DFGYTRLTAKNGTHAHVHWVRNSDASGVVIDSFWL 435 (452)
T ss_pred cCCeEEEEEecCceEEEEEEeccCCCceEeeeEEE
Confidence 99999999999999999999988888888888875
No 2
>PLN02533 probable purple acid phosphatase
Probab=100.00 E-value=3.4e-79 Score=647.85 Aligned_cols=373 Identities=44% Similarity=0.782 Sum_probs=324.9
Q ss_pred CCCCCceeEEeecCCCCeEEEEEEcCCCccCCCCCCCCCCCCccEEEEecCCCCcceEEEEEEEEeeeccccCCcccccc
Q 009637 72 TGFEPEQLSVSLSFNHDSIWITWITGEFQIGDNIKPLDPKTVASFVRYGTSRTNLNHEATGHSLVYDQLYPFEGLQNYTS 151 (530)
Q Consensus 72 ~~~~P~qi~l~~~~~~~~m~V~W~T~~~~~g~~~~~~~p~~~~~~V~yg~~~~~~~~~a~g~~~~y~~~~~~~g~~~~~~ 151 (530)
....|+|||||+++ +++|+|+|.|.+. ..+.|+||++++.++.++.|++.+|+.. ..|.+
T Consensus 40 ~~~~P~qvhls~~~-~~~m~V~W~T~~~-------------~~~~V~yG~~~~~l~~~a~g~~~~~~~~------~~~~~ 99 (427)
T PLN02533 40 DPTHPDQVHISLVG-PDKMRISWITQDS-------------IPPSVVYGTVSGKYEGSANGTSSSYHYL------LIYRS 99 (427)
T ss_pred CCCCCceEEEEEcC-CCeEEEEEECCCC-------------CCCEEEEecCCCCCcceEEEEEEEEecc------ccccC
Confidence 34689999999998 9999999999753 2478999999999999999998888632 24678
Q ss_pred CeEEEEEeCCCCCCCEEEEEEeeCCCCCCCceeEEEcCCCCCCCCCCeEEEEEccCCCCCChHHHHHHHHhCCCCEEEEc
Q 009637 152 GIIHHVRLTGLEPNNKYYYQCGDPSIPAMSDVYYFRTLPASGPQSYPKRIAIVGDLGLTYNTTCTINHMSSNEPDLVLLV 231 (530)
Q Consensus 152 ~~~h~v~l~gL~P~T~Y~Yrvg~~~~~~~S~~~~F~T~p~~~~~~~~~rf~v~gD~g~~~~~~~~~~~l~~~~pDfvl~~ 231 (530)
+++|+|+|+||+|+|+|+||||+. .+|++++|+|+|.. .++||+++||+|.......+++++.+.+|||||++
T Consensus 100 g~iH~v~l~~L~p~T~Y~Yrvg~~---~~s~~~~F~T~p~~----~~~~f~v~GDlG~~~~~~~tl~~i~~~~pD~vl~~ 172 (427)
T PLN02533 100 GQINDVVIGPLKPNTVYYYKCGGP---SSTQEFSFRTPPSK----FPIKFAVSGDLGTSEWTKSTLEHVSKWDYDVFILP 172 (427)
T ss_pred CeEEEEEeCCCCCCCEEEEEECCC---CCccceEEECCCCC----CCeEEEEEEeCCCCcccHHHHHHHHhcCCCEEEEc
Confidence 999999999999999999999964 46899999998853 37999999999987666778999999999999999
Q ss_pred CccccccccccCCCCCcccccCCCCCCccccchHHHHHHHHHHHHhhhcCCeEEccCCccccccc--cccchHHHhhhcC
Q 009637 232 GDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQPRWDYWGRFMQNLVSKVPIMVVEGNHEIEAQA--GNQTFVAYSSRFA 309 (530)
Q Consensus 232 GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~~~wd~~~~~l~~l~~~vP~~~v~GNHD~~~~~--~~~~f~~y~~~f~ 309 (530)
||++|++. |+.+|+.|.+.++++.+.+|+|+++||||..... ....|..|..+|.
T Consensus 173 GDl~y~~~-----------------------~~~~wd~f~~~i~~l~s~~P~m~~~GNHE~~~~~~~~~~~f~~y~~rf~ 229 (427)
T PLN02533 173 GDLSYANF-----------------------YQPLWDTFGRLVQPLASQRPWMVTHGNHELEKIPILHPEKFTAYNARWR 229 (427)
T ss_pred Cccccccc-----------------------hHHHHHHHHHHhhhHhhcCceEEeCccccccccccccCcCccchhhccc
Confidence 99999642 3678999999999999999999999999986432 2356788999999
Q ss_pred CCCCCCCCCCcceEEEEcCcEEEEEEcccccCCCCHHHHHHHHHHHhcccCCCCCEEEEEeCCCCccCCCCCCch--hHH
Q 009637 310 FPSEESGSLSSFYYSFNAGGIHFIMLGAYISYDKSGHQYKWLEKDLANVDRSVTPWLVATWHPPWYSSYSSHYRE--AEC 387 (530)
Q Consensus 310 ~P~~~~~~~~~~yYsf~~G~v~fI~Ldt~~~~~~~~~Q~~WL~~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~--~~~ 387 (530)
||.++++...+.||||++|++|||+||++.++....+|++||+++|++++++++||+||++|+|+|++...+..+ ...
T Consensus 230 mP~~~~g~~~~~yYSfd~g~vhfI~Lds~~~~~~~~~Q~~WLe~dL~~~~r~~~pwiIv~~H~P~y~s~~~~~~~~~~~~ 309 (427)
T PLN02533 230 MPFEESGSTSNLYYSFNVYGVHIIMLGSYTDFEPGSEQYQWLENNLKKIDRKTTPWVVAVVHAPWYNSNEAHQGEKESVG 309 (427)
T ss_pred CCccccCCCCCceEEEEECCEEEEEEeCCccccCchHHHHHHHHHHHhhcccCCCEEEEEeCCCeeecccccCCcchhHH
Confidence 998776677899999999999999999999888899999999999999988889999999999999986544332 245
Q ss_pred HHHHHHHHHHHcCCcEEEEccccCceeeeecccCccCCCCcEEEEeCCCccccccccccCCCCCCCCCCCCCCCCCCCCc
Q 009637 388 MRVEMEALLYSYGVDIVFNGHVHAYERSNRVFNYTLDPCGPVHITIGDGGNLEKMSITHADEPGNCPEPSSTPDPYMGGF 467 (530)
Q Consensus 388 ~r~~l~~ll~k~~VdlvlsGH~H~yeR~~pv~~~~~~~~G~vyIv~G~gG~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (530)
+|+.|++||++++||++|+||+|.|||++|+|+++++++|++||++|+||+.|++...+
T Consensus 310 ~r~~le~Ll~~~~VdlvlsGH~H~YeR~~p~~~~~~~~~gpvyiv~G~gG~~e~~~~~~--------------------- 368 (427)
T PLN02533 310 MKESMETLLYKARVDLVFAGHVHAYERFDRVYQGKTDKCGPVYITIGDGGNREGLATKY--------------------- 368 (427)
T ss_pred HHHHHHHHHHHhCCcEEEecceecccccccccCCccCCCCCEEEEeCCCcccccccccc---------------------
Confidence 78999999999999999999999999999999999999999999999999998865321
Q ss_pred cccccccCCCCCCCCCCCCCCccceecCCcceEEEEEeecceeeeeeeeccCCCceeeccccC
Q 009637 468 CATNFTSGPAAGKFCWDRQPDYSAFRESSFGHGILEVLSLSLLFVPLFLQPKFNTMVTHGLFL 530 (530)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~p~wsa~r~~~~G~~~l~v~n~t~~~~~~~~~~~~~~~~~~~~~~ 530 (530)
+.++|+||+||+.+|||++|+|+|.|||+|+++.+++.+.++.+-+||
T Consensus 369 ---------------~~~~~~~s~~r~~~~G~~~l~v~n~t~l~~~~~~~~~~~~~~~D~~~i 416 (427)
T PLN02533 369 ---------------IDPKPDISLFREASFGHGQLNVVDANTMEWTWHRNDDDQSVASDSVWL 416 (427)
T ss_pred ---------------CCCCCCceeEEeccCCEEEEEEEcCCeEEEEEEecCCCCceeeeEEEE
Confidence 136789999999999999999999999999999877777777776654
No 3
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=100.00 E-value=1.7e-44 Score=366.70 Aligned_cols=264 Identities=43% Similarity=0.739 Sum_probs=210.7
Q ss_pred CCeEEEEEccCCCC-CChHHHHHHHHh--CCCCEEEEcCccccccccccCCCCCcccccCCCCCCccccchHHHHHHHHH
Q 009637 197 YPKRIAIVGDLGLT-YNTTCTINHMSS--NEPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQPRWDYWGRF 273 (530)
Q Consensus 197 ~~~rf~v~gD~g~~-~~~~~~~~~l~~--~~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~~~wd~~~~~ 273 (530)
.++||+++||+|.. .....+++++.+ .+|||||++||++|++... .+.+|+.|.+.
T Consensus 3 ~~~~f~v~gD~~~~~~~~~~~~~~l~~~~~~~d~vl~~GDl~~~~~~~---------------------~~~~~~~~~~~ 61 (294)
T cd00839 3 TPFKFAVFGDMGQNTNNSTNTLDHLEKELGNYDAILHVGDLAYADGYN---------------------NGSRWDTFMRQ 61 (294)
T ss_pred CcEEEEEEEECCCCCCCcHHHHHHHHhccCCccEEEEcCchhhhcCCc---------------------cchhHHHHHHH
Confidence 37999999999973 456788888887 6899999999999864210 12579999999
Q ss_pred HHHhhhcCCeEEccCCccccccccccchHHHhhhcCCCCCCCCCCCcceEEEEcCcEEEEEEcccccC---CCCHHHHHH
Q 009637 274 MQNLVSKVPIMVVEGNHEIEAQAGNQTFVAYSSRFAFPSEESGSLSSFYYSFNAGGIHFIMLGAYISY---DKSGHQYKW 350 (530)
Q Consensus 274 l~~l~~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~Ldt~~~~---~~~~~Q~~W 350 (530)
++++.+.+|+++++||||............+..++.++........+.||+|++|++|||+|||+... ....+|++|
T Consensus 62 ~~~~~~~~P~~~~~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ysf~~g~v~fi~Lds~~~~~~~~~~~~q~~W 141 (294)
T cd00839 62 IEPLASYVPYMVTPGNHEADYNFSFYKIKAFFPRFRFPHSPSGSTSNLWYSFDVGPVHFVSLSTEVDFYGDGPGSPQYDW 141 (294)
T ss_pred HHHHHhcCCcEEcCcccccccCCCCcccccccccccccCCCCCCCCCceEEEeeCCEEEEEEecccccccCCCCcHHHHH
Confidence 99999999999999999997543322111111123344433344568899999999999999998765 568999999
Q ss_pred HHHHHhcccCCCCCEEEEEeCCCCccCCCCCCc--hhHHHHHHHHHHHHHcCCcEEEEccccCceeeeecccCc------
Q 009637 351 LEKDLANVDRSVTPWLVATWHPPWYSSYSSHYR--EAECMRVEMEALLYSYGVDIVFNGHVHAYERSNRVFNYT------ 422 (530)
Q Consensus 351 L~~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~--~~~~~r~~l~~ll~k~~VdlvlsGH~H~yeR~~pv~~~~------ 422 (530)
|+++|+++++++++|+||++|+|+|+....... .....++.|++||.+|+|+++|+||+|.|+|++|+++++
T Consensus 142 L~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~l~~ll~~~~v~~vl~GH~H~y~r~~p~~~~~~~~~~~ 221 (294)
T cd00839 142 LEADLAKVDRSKTPWIIVMGHRPMYCSNTDHDDCIEGEKMRAALEDLFYKYGVDLVLSGHVHAYERTCPVYNGTVVGDCN 221 (294)
T ss_pred HHHHHHHhcccCCCeEEEEeccCcEecCccccccchhHHHHHHHHHHHHHhCCCEEEEccceeeEeechhhCCEeccccc
Confidence 999999987667899999999999987654332 245678999999999999999999999999999998865
Q ss_pred --cCCCCcEEEEeCCCccccccccccCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCccceecCCcceE
Q 009637 423 --LDPCGPVHITIGDGGNLEKMSITHADEPGNCPEPSSTPDPYMGGFCATNFTSGPAAGKFCWDRQPDYSAFRESSFGHG 500 (530)
Q Consensus 423 --~~~~G~vyIv~G~gG~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~wsa~r~~~~G~~ 500 (530)
.+++|++||++|+||+.+...... ...++|++++...|||+
T Consensus 222 ~~~~~~g~~yiv~G~~G~~~~~~~~~-------------------------------------~~~~~~~~~~~~~~g~~ 264 (294)
T cd00839 222 PYSNPKGPVHIVIGAGGNDEGLDPFS-------------------------------------APPPAWSAFRESDYGFG 264 (294)
T ss_pred cccCCCccEEEEECCCccccCcCccc-------------------------------------CCCCCceEEEeccCCEE
Confidence 368999999999999977543110 02368999999999999
Q ss_pred EEEEeecceeeeeeeecc
Q 009637 501 ILEVLSLSLLFVPLFLQP 518 (530)
Q Consensus 501 ~l~v~n~t~~~~~~~~~~ 518 (530)
+|+|.|.|+|.|+++...
T Consensus 265 ~~~~~~~t~l~~~~~~~~ 282 (294)
T cd00839 265 RLTVHNSTHLHFEWIRND 282 (294)
T ss_pred EEEEEecCeEEEEEEECC
Confidence 999999999999888744
No 4
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=99.98 E-value=4.6e-31 Score=266.01 Aligned_cols=243 Identities=25% Similarity=0.394 Sum_probs=171.7
Q ss_pred eEEEEEccCCCC--CChHHH---HHHHH-hCCCCEEEEcCccccccccccCCCCCcccccCCCCCCccccchHHH-HHHH
Q 009637 199 KRIAIVGDLGLT--YNTTCT---INHMS-SNEPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQPRW-DYWG 271 (530)
Q Consensus 199 ~rf~v~gD~g~~--~~~~~~---~~~l~-~~~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~~~w-d~~~ 271 (530)
++|+++||+|.. .....+ +.++. +.+|||||++||++|+++... .+..+| +.+.
T Consensus 1 ~~f~~~gD~g~~~~~~~~~~~~~~~~~~~~~~~dfvv~~GD~~y~~g~~~-------------------~~~~~~~~~~~ 61 (277)
T cd07378 1 LRFLALGDWGGGGTAGQKAVAKAMAKVAAELGPDFILSLGDNFYDDGVGS-------------------VDDPRFETTFE 61 (277)
T ss_pred CeEEEEeecCCCCCHHHHHHHHHHHHHHHhcCCCEEEeCCCccccCCCCC-------------------CcchHHHHHHH
Confidence 489999999985 222222 23333 369999999999999753210 011233 3455
Q ss_pred HHHHHhhhcCCeEEccCCcccccccccc-chHH--HhhhcCCCCCCCCCCCcceEEEEcC------cEEEEEEcccccC-
Q 009637 272 RFMQNLVSKVPIMVVEGNHEIEAQAGNQ-TFVA--YSSRFAFPSEESGSLSSFYYSFNAG------GIHFIMLGAYISY- 341 (530)
Q Consensus 272 ~~l~~l~~~vP~~~v~GNHD~~~~~~~~-~f~~--y~~~f~~P~~~~~~~~~~yYsf~~G------~v~fI~Ldt~~~~- 341 (530)
+.++.+..++|+++++||||........ .+.. +..++.+| ..||+|+++ +++||+|||....
T Consensus 62 ~~~~~~~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~--------~~~y~~~~~~~~~~~~~~~i~LDt~~~~~ 133 (277)
T cd07378 62 DVYSAPSLQVPWYLVLGNHDYSGNVSAQIDYTKRPNSPRWTMP--------AYYYRVSFPFPSSDTTVEFIMIDTVPLCG 133 (277)
T ss_pred HHccchhhcCCeEEecCCcccCCCchheeehhccCCCCCccCc--------chheEEEeecCCCCCEEEEEEEeChhHcC
Confidence 5555555689999999999997432111 1111 12223333 469999988 7999999996431
Q ss_pred --------------CCCHHHHHHHHHHHhcccCCCCCEEEEEeCCCCccCCCCCCchhHHHHHHHHHHHHHcCCcEEEEc
Q 009637 342 --------------DKSGHQYKWLEKDLANVDRSVTPWLVATWHPPWYSSYSSHYREAECMRVEMEALLYSYGVDIVFNG 407 (530)
Q Consensus 342 --------------~~~~~Q~~WL~~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~k~~VdlvlsG 407 (530)
....+|++||+++|+++. .+|+||++|+|+++...... ....++.|++++.+++|+++|+|
T Consensus 134 ~~~~~~~~~~~~~~~~~~~Q~~wL~~~L~~~~---~~~~iv~~H~P~~~~~~~~~--~~~~~~~l~~l~~~~~v~~vl~G 208 (277)
T cd07378 134 NSDDIASPYGPPNGKLAEEQLAWLEKTLAAST---ADWKIVVGHHPIYSSGEHGP--TSCLVDRLLPLLKKYKVDAYLSG 208 (277)
T ss_pred ccccccccccCcchhhHHHHHHHHHHHHHhcC---CCeEEEEeCccceeCCCCCC--cHHHHHHHHHHHHHcCCCEEEeC
Confidence 136899999999999864 37999999999997653221 24678899999999999999999
Q ss_pred cccCceeeeecccCccCCCCcEEEEeCCCccccccccccCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCC
Q 009637 408 HVHAYERSNRVFNYTLDPCGPVHITIGDGGNLEKMSITHADEPGNCPEPSSTPDPYMGGFCATNFTSGPAAGKFCWDRQP 487 (530)
Q Consensus 408 H~H~yeR~~pv~~~~~~~~G~vyIv~G~gG~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 487 (530)
|.|.+++..+ ...|+.||++|+||...+..... ...+|
T Consensus 209 H~H~~~~~~~------~~~~~~~i~~G~~~~~~~~~~~~------------------------------------~~~~~ 246 (277)
T cd07378 209 HDHNLQHIKD------DGSGTSFVVSGAGSKARPSVKHI------------------------------------DKVPQ 246 (277)
T ss_pred Ccccceeeec------CCCCcEEEEeCCCcccCCCCCcc------------------------------------Ccccc
Confidence 9999998864 23699999999988865432100 01235
Q ss_pred CccceecCCcceEEEEEeecceeeeeeee
Q 009637 488 DYSAFRESSFGHGILEVLSLSLLFVPLFL 516 (530)
Q Consensus 488 ~wsa~r~~~~G~~~l~v~n~t~~~~~~~~ 516 (530)
+|++++...+||.+++|.+. ++.++++-
T Consensus 247 ~~~~~~~~~~Gy~~i~v~~~-~l~~~~~~ 274 (277)
T cd07378 247 FFSGFTSSGGGFAYLELTKE-ELTVRFYD 274 (277)
T ss_pred cccccccCCCCEEEEEEecC-EEEEEEEC
Confidence 78899999999999999876 67777664
No 5
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=99.97 E-value=2e-30 Score=267.54 Aligned_cols=238 Identities=20% Similarity=0.332 Sum_probs=170.7
Q ss_pred CeEEEEEccCCCCCChHHHHHH-HH----hCCCCEEEEcCccccccccccCCCCCcccccCCCCCCccccchHHHHH-HH
Q 009637 198 PKRIAIVGDLGLTYNTTCTINH-MS----SNEPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQPRWDY-WG 271 (530)
Q Consensus 198 ~~rf~v~gD~g~~~~~~~~~~~-l~----~~~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~~~wd~-~~ 271 (530)
.++|+++||+|.+...+..+++ |. +.++|||+.+||+. .++.. + ...++|.. |.
T Consensus 26 ~l~F~~vGDwG~g~~~Q~~VA~~M~~~~~~~~~~FVls~GDNF-~~Gv~--s-----------------v~Dp~f~~~FE 85 (394)
T PTZ00422 26 QLRFASLGNWGTGSKQQKLVASYLKQYAKNERVTFLVSPGSNF-PGGVD--G-----------------LNDPKWKHCFE 85 (394)
T ss_pred eEEEEEEecCCCCchhHHHHHHHHHHHHHhCCCCEEEECCccc-cCCCC--C-----------------ccchhHHhhHh
Confidence 6899999999976444444333 22 46899999999998 33321 1 11355654 44
Q ss_pred HHHHHhh--hcCCeEEccCCccccccccccc--hH------------H------HhhhcCCCCCCCCCCCcceEEE----
Q 009637 272 RFMQNLV--SKVPIMVVEGNHEIEAQAGNQT--FV------------A------YSSRFAFPSEESGSLSSFYYSF---- 325 (530)
Q Consensus 272 ~~l~~l~--~~vP~~~v~GNHD~~~~~~~~~--f~------------~------y~~~f~~P~~~~~~~~~~yYsf---- 325 (530)
+...... .++||++++||||+.++...+. +. . ...||.||. .||.+
T Consensus 86 ~vY~~~s~~L~~Pwy~vLGNHDy~Gn~~AQi~r~~~~y~~~~~~~~~~y~~~~~~~~RW~mP~--------~yY~~~~~f 157 (394)
T PTZ00422 86 NVYSEESGDMQIPFFTVLGQADWDGNYNAELLKGQNVYLNGHGQTDIEYDSNNDIYPKWIMPN--------YWYHYFTHF 157 (394)
T ss_pred hhccCcchhhCCCeEEeCCcccccCCchhhhccccccccccccccccccccccccCCCccCCc--------hhheeeeee
Confidence 4444443 5799999999999975533211 11 1 125777773 57754
Q ss_pred Ec-------------CcEEEEEEccccc-----C-CCCHHHHHHHHHHHhcccCCCCCEEEEEeCCCCccCCCCCCchhH
Q 009637 326 NA-------------GGIHFIMLGAYIS-----Y-DKSGHQYKWLEKDLANVDRSVTPWLVATWHPPWYSSYSSHYREAE 386 (530)
Q Consensus 326 ~~-------------G~v~fI~Ldt~~~-----~-~~~~~Q~~WL~~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~ 386 (530)
.. ..+.||+|||... + .....|++||+++|+.+ ++.++|+||++|||+|+++.. ....
T Consensus 158 ~~~~~~~~~~~~~~~~~v~fifiDT~~l~~~~~~~~~~~~~w~~L~~~L~~a-~k~a~WkIVvGHhPIySsG~h--g~~~ 234 (394)
T PTZ00422 158 TDTSGPSLLKSGHKDMSVAFIFIDTWILSSSFPYKKVSERAWQDLKATLEYA-PKIADYIIVVGDKPIYSSGSS--KGDS 234 (394)
T ss_pred ecccccccccccCCCCEEEEEEEECchhcccCCccccCHHHHHHHHHHHHhh-ccCCCeEEEEecCceeecCCC--CCCH
Confidence 22 2389999999632 1 22578999999999754 356789999999999998642 2345
Q ss_pred HHHHHHHHHHHHcCCcEEEEccccCceeeeecccCccCCCCcEEEEeCCCccccccccccCCCCCCCCCCCCCCCCCCCC
Q 009637 387 CMRVEMEALLYSYGVDIVFNGHVHAYERSNRVFNYTLDPCGPVHITIGDGGNLEKMSITHADEPGNCPEPSSTPDPYMGG 466 (530)
Q Consensus 387 ~~r~~l~~ll~k~~VdlvlsGH~H~yeR~~pv~~~~~~~~G~vyIv~G~gG~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (530)
+++..|++||++|+||++|+||+|.+|+.. ++|+.||++|+||...+...
T Consensus 235 ~L~~~L~PLL~ky~VdlYisGHDH~lq~i~--------~~gt~yIvSGaGs~~~~~~~---------------------- 284 (394)
T PTZ00422 235 YLSYYLLPLLKDAQVDLYISGYDRNMEVLT--------DEGTAHINCGSGGNSGRKSI---------------------- 284 (394)
T ss_pred HHHHHHHHHHHHcCcCEEEEccccceEEec--------CCCceEEEeCccccccCCCC----------------------
Confidence 789999999999999999999999999974 46899999999998543210
Q ss_pred ccccccccCCCCCCCCCCCCCCccceecCCcceEEEEEeecceeeeeee
Q 009637 467 FCATNFTSGPAAGKFCWDRQPDYSAFRESSFGHGILEVLSLSLLFVPLF 515 (530)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~p~wsa~r~~~~G~~~l~v~n~t~~~~~~~ 515 (530)
...+|++|.....||..++ .+.+.+....+
T Consensus 285 ------------------~~~~~s~F~~~~~GF~~~~-l~~~~l~~~fi 314 (394)
T PTZ00422 285 ------------------MKNSKSLFYSEDIGFCIHE-LNAEGMVTKFV 314 (394)
T ss_pred ------------------CCCCCcceecCCCCEEEEE-EecCEEEEEEE
Confidence 2246788988999999999 66778888544
No 6
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=99.95 E-value=2e-26 Score=230.59 Aligned_cols=204 Identities=23% Similarity=0.366 Sum_probs=148.5
Q ss_pred CeEEEEEccCCCCCC-----------------hHHHHHHHHhC--CCCEEEEcCccccccccccCCCCCcccccCCCCCC
Q 009637 198 PKRIAIVGDLGLTYN-----------------TTCTINHMSSN--EPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTP 258 (530)
Q Consensus 198 ~~rf~v~gD~g~~~~-----------------~~~~~~~l~~~--~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~ 258 (530)
+++|++++|+|.+.. ....++.+.+. +||||+++||+++. +..
T Consensus 4 ~~~f~~~sD~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~pd~ii~~GDl~~~------~~~------------ 65 (262)
T cd07395 4 PFYFIQGADPQLGLIKKNLEGGGDEWDEEIKLTEQAVQAINKLNPKPKFVVVCGDLVNA------MPG------------ 65 (262)
T ss_pred CEEEEEecCCccchhhccccCchhhhhhHHHHHHHHHHHHHhcCCCCCEEEEeCCcCCC------Ccc------------
Confidence 799999999998721 12345556555 89999999999963 211
Q ss_pred ccccchHHHHHHHHHHHHhhhcCCeEEccCCccccccccccchHHHhhhcCCCCCCCCCCCcceEEEEcCcEEEEEEccc
Q 009637 259 IHETYQPRWDYWGRFMQNLVSKVPIMVVEGNHEIEAQAGNQTFVAYSSRFAFPSEESGSLSSFYYSFNAGGIHFIMLGAY 338 (530)
Q Consensus 259 ~~~~y~~~wd~~~~~l~~l~~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~Ldt~ 338 (530)
.+....+|+.+.+.++.+...+|+++++||||+........+..|...| +..||+|++|+++||+|||.
T Consensus 66 -~~~~~~~~~~~~~~~~~~~~~vp~~~i~GNHD~~~~~~~~~~~~f~~~~----------g~~~y~~~~~~~~~i~lds~ 134 (262)
T cd07395 66 -DELRERQVSDLKDVLSLLDPDIPLVCVCGNHDVGNTPTEESIKDYRDVF----------GDDYFSFWVGGVFFIVLNSQ 134 (262)
T ss_pred -hhhHHHHHHHHHHHHhhccCCCcEEEeCCCCCCCCCCChhHHHHHHHHh----------CCcceEEEECCEEEEEeccc
Confidence 0111245777777777776789999999999986433333344454444 23589999999999999996
Q ss_pred ccC------CCCHHHHHHHHHHHhcccCCCCCEEEEEeCCCCccCCCCCC----chhHHHHHHHHHHHHHcCCcEEEEcc
Q 009637 339 ISY------DKSGHQYKWLEKDLANVDRSVTPWLVATWHPPWYSSYSSHY----REAECMRVEMEALLYSYGVDIVFNGH 408 (530)
Q Consensus 339 ~~~------~~~~~Q~~WL~~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~----~~~~~~r~~l~~ll~k~~VdlvlsGH 408 (530)
... ....+|++||+++|+++.+.+.+++||++|+|++....... ......++++.++|++++|+++||||
T Consensus 135 ~~~~~~~~~~~~~~ql~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~V~~v~~GH 214 (262)
T cd07395 135 LFFDPSEVPELAQAQDVWLEEQLEIAKESDCKHVIVFQHIPWFLEDPDEEDSYFNIPKSVRKPLLDKFKKAGVKAVFSGH 214 (262)
T ss_pred cccCccccccchHHHHHHHHHHHHHHHhccCCcEEEEECcCCccCCCCCCcccCCcCHHHHHHHHHHHHhcCceEEEECc
Confidence 432 13579999999999997544567899999999986432211 12235678999999999999999999
Q ss_pred ccCceeeeecccCccCCCCcEEEEeCCCcc
Q 009637 409 VHAYERSNRVFNYTLDPCGPVHITIGDGGN 438 (530)
Q Consensus 409 ~H~yeR~~pv~~~~~~~~G~vyIv~G~gG~ 438 (530)
+|.+++.. -.|+.+++++++|.
T Consensus 215 ~H~~~~~~--------~~g~~~~~~~~~~~ 236 (262)
T cd07395 215 YHRNAGGR--------YGGLEMVVTSAIGA 236 (262)
T ss_pred cccCCceE--------ECCEEEEEcCceec
Confidence 99988743 24788888887765
No 7
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=99.93 E-value=1.2e-23 Score=226.42 Aligned_cols=261 Identities=23% Similarity=0.351 Sum_probs=141.5
Q ss_pred cCeEEEEEeCCCCCCCEEEEEEeeCCCCCCCceeEEEcCCCCCCCCCCeEEEEEccCCCCCChHHHHHHHHh-CCCCEEE
Q 009637 151 SGIIHHVRLTGLEPNNKYYYQCGDPSIPAMSDVYYFRTLPASGPQSYPKRIAIVGDLGLTYNTTCTINHMSS-NEPDLVL 229 (530)
Q Consensus 151 ~~~~h~v~l~gL~P~T~Y~Yrvg~~~~~~~S~~~~F~T~p~~~~~~~~~rf~v~gD~g~~~~~~~~~~~l~~-~~pDfvl 229 (530)
..+.++|.|+||+|+|+|+||+........|.+++|||+|..... ++||++++|.+.......+++++.+ .+|||+|
T Consensus 60 ~d~t~~v~v~gL~p~t~Y~Y~~~~~~~~~~s~~g~~rT~p~~~~~--~~r~a~~SC~~~~~~~~~~~~~~a~~~~~D~~l 137 (453)
T PF09423_consen 60 RDFTVKVDVTGLQPGTRYYYRFVVDGGGQTSPVGRFRTAPDGDPD--PFRFAFGSCQNYEDGYFPAYRRIAERDDPDFVL 137 (453)
T ss_dssp GTTEEEEEE-S--TT-EEEEEEEE--TTEE---EEEE--TT-------EEEEEE----CCC---HHHHHHTT-S--SEEE
T ss_pred CCeEeecccCCCCCCceEEEEEEEecCCCCCCceEEEcCCCCCCC--ceEEEEECCCCcccChHHHHHhhhccCCCcEEE
Confidence 458999999999999999999998543578899999999765433 6999999999876556778899988 6999999
Q ss_pred EcCcccccccc--ccCCCCCcccccCCC--CCCccccchHHHHHHH--HHHHHhhhcCCeEEccCCccccccccc-----
Q 009637 230 LVGDVTYANLY--LTNGTGSDCYSCSFS--KTPIHETYQPRWDYWG--RFMQNLVSKVPIMVVEGNHEIEAQAGN----- 298 (530)
Q Consensus 230 ~~GDl~Yad~~--~~~G~~~~cy~~~~~--~~~~~~~y~~~wd~~~--~~l~~l~~~vP~~~v~GNHD~~~~~~~----- 298 (530)
|+||.+|++.. ..+.....-.....| .....+.|+.+|..+. ..++.+.+.+|+++++.+||+.++...
T Consensus 138 ~lGD~IY~d~~~~~~~~~~~~~~r~~~p~~~~~~l~~yR~~y~~~~~~p~l~~~~~~~P~~~iwDDHdi~nn~~~~~~~~ 217 (453)
T PF09423_consen 138 HLGDQIYEDGGGGYGNLSRRPIGRAPEPAHEAETLDDYRRRYRQYRSDPDLRRLHANVPWIMIWDDHDIGNNWWGDGAEN 217 (453)
T ss_dssp E-S-SS----TTSS--TT---S-----SSSS--SHHHHHHHHHHHHT-HHHHHHHHHSEEEE---STTTSTT-BTTB-ST
T ss_pred EeCCeeeccCCcccccccccccccccccccccccHHHHHHHHHHHcCCHHHHHHhhcccEEEEccCceecccccCCcccc
Confidence 99999998741 000000000000001 1223345666665553 457778889999999999999865431
Q ss_pred -------------cchHHHhhhcCCCCCC-CCCCCcceEEEEcCc-EEEEEEcccccCC---------------------
Q 009637 299 -------------QTFVAYSSRFAFPSEE-SGSLSSFYYSFNAGG-IHFIMLGAYISYD--------------------- 342 (530)
Q Consensus 299 -------------~~f~~y~~~f~~P~~~-~~~~~~~yYsf~~G~-v~fI~Ldt~~~~~--------------------- 342 (530)
..+.+|.+........ .+.....|++|.+|+ +.|++||+.....
T Consensus 218 ~~~~~~~~~~~~~~a~~ay~e~~p~r~~~~~~~~~~~y~~~~~G~~~~~~~LD~R~~R~~~~~~~~~~~~~~~~~~~~~m 297 (453)
T PF09423_consen 218 HQDTSGDFQDRRRAAYQAYFEYQPVRNPDPPGDQGRIYRSFRYGDLVEFFMLDTRSYRSPPPCDGPGDTCPAADDPSRTM 297 (453)
T ss_dssp T---HHHHHHHHHHHHHHHHHHS---GGG-BTTB----EEEEETTTEEEEE--SSSS----CCCSSEE--HHHH-TT--S
T ss_pred ccccccchHHHHHHHHHHHHhhcCccCCCccCCCCceEEEEecCCceeEEEEechhccccccccccccccccccCCccCc
Confidence 1112333322221111 122456799999999 9999999853221
Q ss_pred CCHHHHHHHHHHHhcccCCCCCEEEEEeCCCCccCC-----------CCCCchhHHHHHHHHHHHHHcCCc--EEEEccc
Q 009637 343 KSGHQYKWLEKDLANVDRSVTPWLVATWHPPWYSSY-----------SSHYREAECMRVEMEALLYSYGVD--IVFNGHV 409 (530)
Q Consensus 343 ~~~~Q~~WL~~~L~~~~r~~~pwvIv~~H~P~y~s~-----------~~~~~~~~~~r~~l~~ll~k~~Vd--lvlsGH~ 409 (530)
.+.+|++||++.|++ +.++|+|+..-.|+.... ...+......|++|.++|.+.++. ++|+|.+
T Consensus 298 LG~~Q~~wL~~~L~~---s~a~~kvi~s~v~~~~~~~~~~~~~~~~~~d~W~g~~~er~~Ll~~l~~~~~~~vV~LSGDv 374 (453)
T PF09423_consen 298 LGEEQWDWLEDWLAS---SQATWKVIGSSVPFSPLNFPDAAEGLPFNMDSWDGYPAERQRLLDFLRESGIRNVVFLSGDV 374 (453)
T ss_dssp S-HHHHHHHHHHHHH-----SSEEEEE-SS--S---SS-SS-S--EETTSGGGSHHHHHHHHHHHHHTT---EEEEE-SS
T ss_pred CCHHHHHHHHHHHhc---CCCcEEEEEeCCceecccccccccccccCCCchhhCHHHHHHHHHHHHhhCCCCEEEEecCc
Confidence 178999999999998 458999999888865432 123444556799999999988875 8999999
Q ss_pred cCceeee
Q 009637 410 HAYERSN 416 (530)
Q Consensus 410 H~yeR~~ 416 (530)
|......
T Consensus 375 H~~~~~~ 381 (453)
T PF09423_consen 375 HASAASR 381 (453)
T ss_dssp SSEEEEE
T ss_pred chheeee
Confidence 9987664
No 8
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=99.91 E-value=3.5e-23 Score=203.98 Aligned_cols=192 Identities=23% Similarity=0.322 Sum_probs=136.7
Q ss_pred EEEEEccCCCCCC-------------hHHHHHHHHhC--CCCEEEEcCccccccccccCCCCCcccccCCCCCCccccch
Q 009637 200 RIAIVGDLGLTYN-------------TTCTINHMSSN--EPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQ 264 (530)
Q Consensus 200 rf~v~gD~g~~~~-------------~~~~~~~l~~~--~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~ 264 (530)
||++++|+|.+.. ...+++.+.+. +||+|+++||+++. +. .
T Consensus 1 r~~~iSDlH~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~d~vi~~GDl~~~------~~------------------~ 56 (240)
T cd07402 1 LLAQISDLHLRADGEGALLGVDTAASLEAVLAHINALHPRPDLVLVTGDLTDD------GS------------------P 56 (240)
T ss_pred CEEEEeCCccCCCCcceecCcCHHHHHHHHHHHHHhcCCCCCEEEECccCCCC------CC------------------H
Confidence 6999999998743 13455566665 89999999999952 22 2
Q ss_pred HHHHHHHHHHHHhhhcCCeEEccCCccccccccccchHHHhhhcCCCCCCCCCCCcceEEEEcCcEEEEEEcccccC---
Q 009637 265 PRWDYWGRFMQNLVSKVPIMVVEGNHEIEAQAGNQTFVAYSSRFAFPSEESGSLSSFYYSFNAGGIHFIMLGAYISY--- 341 (530)
Q Consensus 265 ~~wd~~~~~l~~l~~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~Ldt~~~~--- 341 (530)
..|+.+.+.++.+ ++|++.++||||... .+...|..... .....+|+|+.++++||+||+....
T Consensus 57 ~~~~~~~~~l~~~--~~p~~~v~GNHD~~~--------~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~lds~~~~~~~ 123 (240)
T cd07402 57 ESYERLRELLAAL--PIPVYLLPGNHDDRA--------AMRAVFPELPP---APGFVQYVVDLGGWRLILLDSSVPGQHG 123 (240)
T ss_pred HHHHHHHHHHhhc--CCCEEEeCCCCCCHH--------HHHHhhccccc---cccccceeEecCCEEEEEEeCCCCCCcC
Confidence 3456666777766 799999999999841 22233321100 2345789999999999999986432
Q ss_pred -CCCHHHHHHHHHHHhcccCCCCCEEEEEeCCCCccCCCCCCch-hHHHHHHHHHHHHHc-CCcEEEEccccCceeeeec
Q 009637 342 -DKSGHQYKWLEKDLANVDRSVTPWLVATWHPPWYSSYSSHYRE-AECMRVEMEALLYSY-GVDIVFNGHVHAYERSNRV 418 (530)
Q Consensus 342 -~~~~~Q~~WL~~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~-~~~~r~~l~~ll~k~-~VdlvlsGH~H~yeR~~pv 418 (530)
....+|++||++.|++.. . .++|+++|+|++.......+. ....++.+.+++.++ +|+++|+||+|......
T Consensus 124 ~~~~~~ql~wL~~~L~~~~--~-~~~il~~H~pp~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~v~~GH~H~~~~~~-- 198 (240)
T cd07402 124 GELCAAQLDWLEAALAEAP--D-KPTLVFLHHPPFPVGIAWMDAIGLRNAEALAAVLARHPNVRAILCGHVHRPIDGS-- 198 (240)
T ss_pred CEECHHHHHHHHHHHHhCC--C-CCEEEEECCCCccCCchhhhhhhCCCHHHHHHHHhcCCCeeEEEECCcCchHHeE--
Confidence 236899999999999864 2 347788888877643211111 112367899999999 99999999999976653
Q ss_pred ccCccCCCCcEEEEeCCCccc
Q 009637 419 FNYTLDPCGPVHITIGDGGNL 439 (530)
Q Consensus 419 ~~~~~~~~G~vyIv~G~gG~~ 439 (530)
-+|+.++++|+.|..
T Consensus 199 ------~~g~~~~~~gs~~~~ 213 (240)
T cd07402 199 ------WGGIPLLTAPSTCHQ 213 (240)
T ss_pred ------ECCEEEEEcCcceee
Confidence 378999999988774
No 9
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.90 E-value=2.8e-23 Score=208.52 Aligned_cols=198 Identities=23% Similarity=0.304 Sum_probs=136.8
Q ss_pred eEEEEEccCCCCCC--------------hHHHHHHHHhCCCCEEEEcCccccccccccCCCCCcccccCCCCCCccccch
Q 009637 199 KRIAIVGDLGLTYN--------------TTCTINHMSSNEPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQ 264 (530)
Q Consensus 199 ~rf~v~gD~g~~~~--------------~~~~~~~l~~~~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~ 264 (530)
|||++++|+|.... ..++++.+++.+||+|+++||+++. +.. ...
T Consensus 1 ~r~~~iSD~H~~~~~~~~~~~~~~~~~~l~~~i~~i~~~~~d~vv~~GDlv~~------~~~---------------~~~ 59 (267)
T cd07396 1 FRFGIIADIQYADEDDTRPRYYRNSLEKLEEAVEEWNRESLDFVVQLGDIIDG------DNA---------------RAE 59 (267)
T ss_pred CeEEEEeccccccCCCcccchHHHhHHHHHHHHHHHHcCCCCEEEECCCeecC------CCc---------------hHH
Confidence 69999999995532 1334666767789999999999952 210 012
Q ss_pred HHHHHHHHHHHHhhhcCCeEEccCCccccccccccchHHHhhhcCCCCCCCCCCCcceEEEEcCcEEEEEEccccc----
Q 009637 265 PRWDYWGRFMQNLVSKVPIMVVEGNHEIEAQAGNQTFVAYSSRFAFPSEESGSLSSFYYSFNAGGIHFIMLGAYIS---- 340 (530)
Q Consensus 265 ~~wd~~~~~l~~l~~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~Ldt~~~---- 340 (530)
..|+.+.+.++.+ ++|+++++||||...... .+.. +... ...+..||+|++++++||+||+...
T Consensus 60 ~~~~~~~~~l~~l--~~p~~~v~GNHD~~~~~~-----~~~~-~~~~----~~~~~~yysf~~~~~~~i~lds~~~~~~~ 127 (267)
T cd07396 60 EALDAVLAILDRL--KGPVHHVLGNHDLYNPSR-----EYLL-LYTL----LGLGAPYYSFSPGGIRFIVLDGYDISALG 127 (267)
T ss_pred HHHHHHHHHHHhc--CCCEEEecCccccccccH-----hhhh-cccc----cCCCCceEEEecCCcEEEEEeCCcccccc
Confidence 4566666666655 689999999999863321 1111 0011 1234569999999999999998521
Q ss_pred ------------------------------CCCCHHHHHHHHHHHhcccCCCCCEEEEEeCCCCccCCCCCCchhHHHHH
Q 009637 341 ------------------------------YDKSGHQYKWLEKDLANVDRSVTPWLVATWHPPWYSSYSSHYREAECMRV 390 (530)
Q Consensus 341 ------------------------------~~~~~~Q~~WL~~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~ 390 (530)
.....+|++||+++|+++..+. .++||++|+|++...... ......++
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~Ql~WL~~~L~~~~~~~-~~viV~~Hhp~~~~~~~~-~~~~~~~~ 205 (267)
T cd07396 128 RPEDTPKAENADDNSNLGLYLSEPRFVDWNGGIGEEQLQWLRNELQEADANG-EKVIIFSHFPLHPESTSP-HGLLWNHE 205 (267)
T ss_pred CCCCChhhhhHHHhchhhhhccCccceeccCcCCHHHHHHHHHHHHHHHhcC-CeEEEEEeccCCCCCCCc-cccccCHH
Confidence 1235899999999999875333 358999999987654211 11112357
Q ss_pred HHHHHHHHc-CCcEEEEccccCceeeeecccCccCCCCcEEEEeCCCccc
Q 009637 391 EMEALLYSY-GVDIVFNGHVHAYERSNRVFNYTLDPCGPVHITIGDGGNL 439 (530)
Q Consensus 391 ~l~~ll~k~-~VdlvlsGH~H~yeR~~pv~~~~~~~~G~vyIv~G~gG~~ 439 (530)
.+.+++.++ +|+++|+||+|.++... .+|+.|+++|+-...
T Consensus 206 ~~~~ll~~~~~V~~v~~GH~H~~~~~~--------~~gi~~~~~~a~~~~ 247 (267)
T cd07396 206 EVLSILRAYGCVKACISGHDHEGGYAQ--------RHGIHFLTLEGMVET 247 (267)
T ss_pred HHHHHHHhCCCEEEEEcCCcCCCCccc--------cCCeeEEEechhhcC
Confidence 889999996 89999999999987542 478999988876553
No 10
>COG3540 PhoD Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism]
Probab=99.90 E-value=1.9e-22 Score=207.13 Aligned_cols=278 Identities=23% Similarity=0.285 Sum_probs=192.7
Q ss_pred ccEEEEecCCCCcceEEEEEEEEeeeccccCCccccccCeEEEEEeCCCCCCCEEEEEEeeCCCCCCCceeEEEcCCCCC
Q 009637 114 ASFVRYGTSRTNLNHEATGHSLVYDQLYPFEGLQNYTSGIIHHVRLTGLEPNNKYYYQCGDPSIPAMSDVYYFRTLPASG 193 (530)
Q Consensus 114 ~~~V~yg~~~~~~~~~a~g~~~~y~~~~~~~g~~~~~~~~~h~v~l~gL~P~T~Y~Yrvg~~~~~~~S~~~~F~T~p~~~ 193 (530)
.-.++|++.++.-+.+..|+... .-...+.++|.++||+|++.|+||+...+ ..|.++.|||+|..+
T Consensus 71 ~V~wEvs~~~~f~~ivr~gt~~a-----------~p~~dhtv~v~~~gL~P~~~yfYRf~~~~--~~spvGrtrTapa~~ 137 (522)
T COG3540 71 PVIWEVSTDENFSNIVRKGTVIA-----------SPELDHTVHVDLRGLSPDQDYFYRFKAGD--ERSPVGRTRTAPAPG 137 (522)
T ss_pred ceEEEecCCccHHHHHhcCCccC-----------CcccCceEEEeccCCCCCceEEEEEeeCC--ccccccccccCCCCC
Confidence 34567777765555444444321 11245789999999999999999999876 778999999999987
Q ss_pred CCCCCeEEEEEccCCCCCChHHHHHHHHhCCCCEEEEcCccccccccccCCCCCccccc------CCCC-----CCcccc
Q 009637 194 PQSYPKRIAIVGDLGLTYNTTCTINHMSSNEPDLVLLVGDVTYANLYLTNGTGSDCYSC------SFSK-----TPIHET 262 (530)
Q Consensus 194 ~~~~~~rf~v~gD~g~~~~~~~~~~~l~~~~pDfvl~~GDl~Yad~~~~~G~~~~cy~~------~~~~-----~~~~~~ 262 (530)
..-.-++|++.++.|...+...+.++|.+.+|||+||.||.+|+++-. .+.++. ..+. ...-+.
T Consensus 138 ~~i~~~~fa~ascQ~~~~gy~~aY~~ma~~~~D~viH~GDyIYeyg~~-----~~~~~~~~~~~~~~~~~~~~ei~TLdd 212 (522)
T COG3540 138 RAIRFVWFADASCQGWEIGYMTAYKTMAKEEPDFVIHLGDYIYEYGPI-----PDEVSLNSWKNVVVTQHKSKEIETLDD 212 (522)
T ss_pred CcchhhhhhhccccccccchhHHHHHHHhcCCCEEEEcCCeeeccCCc-----ccccccccccccccCCCCCcceeeHHH
Confidence 543334555555555555667788999999999999999999987532 111100 1111 112357
Q ss_pred chHHHHHHH--HHHHHhhhcCCeEEccCCccccccccc-------------------cchHHHhhhcCCCCCCCC--CCC
Q 009637 263 YQPRWDYWG--RFMQNLVSKVPIMVVEGNHEIEAQAGN-------------------QTFVAYSSRFAFPSEESG--SLS 319 (530)
Q Consensus 263 y~~~wd~~~--~~l~~l~~~vP~~~v~GNHD~~~~~~~-------------------~~f~~y~~~f~~P~~~~~--~~~ 319 (530)
|+.+|..+. ..++...+..||++.+.+||+.++... ..+++|.+ .||-..+. ...
T Consensus 213 YR~rya~y~~D~nLqaahA~~Pwi~~WDDHEv~NN~~~~~~~nD~~~~~k~~~~r~a~A~qAyyE--~mPiR~~~~p~~~ 290 (522)
T COG3540 213 YRGRYAYYKTDENLQAAHAAFPWIVQWDDHEVANNWSNSIDENDSRYDEKDFVLRAAAARQAYYE--HMPIRYSSLPTDG 290 (522)
T ss_pred HhhHHhhhcccHHHHHhhccCCEEEEeccccccccccccccccCCCCChHHHHHHHHHHHHHHHH--hCccccccCCccc
Confidence 888887664 567788889999999999999876321 12244444 35544322 235
Q ss_pred cceEEEEcCc-EEEEEEcccccC------C----------------CCHHHHHHHHHHHhcccCCCCCEEEEEeCCCCcc
Q 009637 320 SFYYSFNAGG-IHFIMLGAYISY------D----------------KSGHQYKWLEKDLANVDRSVTPWLVATWHPPWYS 376 (530)
Q Consensus 320 ~~yYsf~~G~-v~fI~Ldt~~~~------~----------------~~~~Q~~WL~~~L~~~~r~~~pwvIv~~H~P~y~ 376 (530)
..|.+|.+|+ +.|.+||+.... + .+.+|.+||+..|.+ +++.|.|+..-.|+--
T Consensus 291 ~lYR~~tyG~La~~~~LDtR~YR~dqp~~dg~~~~~q~~~~~~~~mlG~~QeqWLk~~L~~---SkatWnVia~q~~~~~ 367 (522)
T COG3540 291 RLYRSFTYGPLADLFVLDTRSYRTDQPCGDGNPPNCQAVAGSAATMLGEQQEQWLKRGLGA---SKATWNVIAQQMPLGL 367 (522)
T ss_pred eeeeeeccccccceeeeehhhhccccccCCCCcchhhhhhCccccchhhHHHHHHHhhhhh---cchhhhhhhhhcceeE
Confidence 7899999998 678999986433 1 178999999999999 6789999988887522
Q ss_pred C---CC----------CCCchhHHHHHHHHHHHHHcCCc--EEEEccccCcee
Q 009637 377 S---YS----------SHYREAECMRVEMEALLYSYGVD--IVFNGHVHAYER 414 (530)
Q Consensus 377 s---~~----------~~~~~~~~~r~~l~~ll~k~~Vd--lvlsGH~H~yeR 414 (530)
. .. ..++....-|+.|..++.+.++. ++|.|.+|...-
T Consensus 368 ~~~d~~~a~~~~~a~~D~wdGy~~~RerLl~fi~~~~~~N~V~LtgDvH~~wA 420 (522)
T COG3540 368 VVFDGSPATEGQEANADGWDGYPAGRERLLRFIADRKIRNTVVLTGDVHYSWA 420 (522)
T ss_pred eecCCCccccCccccccCcCCCcccHHHHHHHHHhcCCCCcEEEechhHHHHH
Confidence 1 00 11223334588999999999875 899999996544
No 11
>KOG2679 consensus Purple (tartrate-resistant) acid phosphatase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=2.2e-21 Score=186.06 Aligned_cols=201 Identities=23% Similarity=0.334 Sum_probs=131.3
Q ss_pred CeEEEEEccCCCCCC--hHHHHH---HHH-hCCCCEEEEcCccccccccccCCCCCcccccCCCCCCccccchHHH-HHH
Q 009637 198 PKRIAIVGDLGLTYN--TTCTIN---HMS-SNEPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQPRW-DYW 270 (530)
Q Consensus 198 ~~rf~v~gD~g~~~~--~~~~~~---~l~-~~~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~~~w-d~~ 270 (530)
+++|+++||+|.... ...+.. +|. +.++||||.+||.+|.++..+. +.+++ +.|
T Consensus 43 slsflvvGDwGr~g~~nqs~va~qmg~ige~l~idfvlS~GDNfYd~G~~~~-------------------~Dp~Fq~sF 103 (336)
T KOG2679|consen 43 SLSFLVVGDWGRRGSFNQSQVALQMGEIGEKLDIDFVLSTGDNFYDTGLTSE-------------------NDPRFQDSF 103 (336)
T ss_pred ceEEEEEcccccCCchhHHHHHHHHHhHHHhccceEEEecCCcccccCCCCC-------------------CChhHHhhh
Confidence 699999999996532 222222 233 3589999999999997653211 11222 122
Q ss_pred HHHHHHhhhcCCeEEccCCcccccccccc---chHHHhhhcCCCCCCCCCCCcceEE------EEcCcEEEEEEcccccC
Q 009637 271 GRFMQNLVSKVPIMVVEGNHEIEAQAGNQ---TFVAYSSRFAFPSEESGSLSSFYYS------FNAGGIHFIMLGAYISY 341 (530)
Q Consensus 271 ~~~l~~l~~~vP~~~v~GNHD~~~~~~~~---~f~~y~~~f~~P~~~~~~~~~~yYs------f~~G~v~fI~Ldt~~~~ 341 (530)
.+....-..+.||+.+.||||+.++...+ .+.....||..|. .||. +..-++.++++|+.+..
T Consensus 104 ~nIYT~pSLQkpWy~vlGNHDyrGnV~AQls~~l~~~d~RW~c~r--------sf~~~ae~ve~f~v~~~~f~~d~~~~~ 175 (336)
T KOG2679|consen 104 ENIYTAPSLQKPWYSVLGNHDYRGNVEAQLSPVLRKIDKRWICPR--------SFYVDAEIVEMFFVDTTPFMDDTFTLC 175 (336)
T ss_pred hhcccCcccccchhhhccCccccCchhhhhhHHHHhhccceeccc--------HHhhcceeeeeeccccccchhhheecc
Confidence 22222222356999999999998764322 1344445665442 1221 11113445555543211
Q ss_pred C--------------CCHHHHHHHHHHHhcccCCCCCEEEEEeCCCCccCCCCCCchhHHHHHHHHHHHHHcCCcEEEEc
Q 009637 342 D--------------KSGHQYKWLEKDLANVDRSVTPWLVATWHPPWYSSYSSHYREAECMRVEMEALLYSYGVDIVFNG 407 (530)
Q Consensus 342 ~--------------~~~~Q~~WL~~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~k~~VdlvlsG 407 (530)
. ....|+.||+..|++ +.++|+||++|+|+.+.+ +.+...|+++.|.|||+.++||++++|
T Consensus 176 ~~~~ydw~~v~PR~~~~~~~l~~le~~L~~---S~a~wkiVvGHh~i~S~~--~HG~T~eL~~~LlPiL~~n~VdlY~nG 250 (336)
T KOG2679|consen 176 TDDVYDWRGVLPRVKYLRALLSWLEVALKA---SRAKWKIVVGHHPIKSAG--HHGPTKELEKQLLPILEANGVDLYING 250 (336)
T ss_pred cccccccccCChHHHHHHHHHHHHHHHHHH---hhcceEEEecccceehhh--ccCChHHHHHHHHHHHHhcCCcEEEec
Confidence 1 146788999999999 578899999999998764 345677999999999999999999999
Q ss_pred cccCceeeeecccCccCCC-CcEEEEeCCCc
Q 009637 408 HVHAYERSNRVFNYTLDPC-GPVHITIGDGG 437 (530)
Q Consensus 408 H~H~yeR~~pv~~~~~~~~-G~vyIv~G~gG 437 (530)
|+|+.|..- +++ ++-|+++|+|.
T Consensus 251 HDHcLQhis-------~~e~~iqf~tSGagS 274 (336)
T KOG2679|consen 251 HDHCLQHIS-------SPESGIQFVTSGAGS 274 (336)
T ss_pred chhhhhhcc-------CCCCCeeEEeeCCcc
Confidence 999999874 334 45555555554
No 12
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.87 E-value=4.9e-21 Score=191.04 Aligned_cols=193 Identities=21% Similarity=0.269 Sum_probs=127.6
Q ss_pred EEEEccCCCCCCh--------HHHHHHHHhCCCCEEEEcCccccccccccCCCCCcccccCCCCCCccccchHHHHHHHH
Q 009637 201 IAIVGDLGLTYNT--------TCTINHMSSNEPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQPRWDYWGR 272 (530)
Q Consensus 201 f~v~gD~g~~~~~--------~~~~~~l~~~~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~~~wd~~~~ 272 (530)
|++++|+|.+... ..+++.+.+.+||+|+++||++.... ..+. ....++.+|+.|.+
T Consensus 2 ~~~iSDlH~g~~~~~~~~~~~~~~~~~i~~~~pd~i~~~GD~~d~~~--~~~~-------------~~~~~~~~~~~~~~ 66 (256)
T cd07401 2 FVHISDIHVSSFHPPNRAQDETFCSNFIDVIKPALVLATGDLTDNKT--GNKL-------------PSYQYQEEWQKYYN 66 (256)
T ss_pred EEEecccccCCcCchhhhhHHHHHHHHHHhhCCCEEEEccccccccc--cCCC-------------cccccHHHHHHHHH
Confidence 7899999986431 11345566779999999999995311 1110 01223567888888
Q ss_pred HHHHhh--hcCCeEEccCCccccccccccchHHHhhhcCCCCCCCCCCCcceEE--EEcCcEEEEEEccccc--------
Q 009637 273 FMQNLV--SKVPIMVVEGNHEIEAQAGNQTFVAYSSRFAFPSEESGSLSSFYYS--FNAGGIHFIMLGAYIS-------- 340 (530)
Q Consensus 273 ~l~~l~--~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~~~~~~~~~yYs--f~~G~v~fI~Ldt~~~-------- 340 (530)
.+.... ...|++.++||||..+.........|..+|.... .....+|. +..|+++||+|||...
T Consensus 67 ~~~~~~~~~~~p~~~v~GNHD~~~~~~~~~~~~~~~~y~~~~----~~~~~~~~~~~~~~~~~~I~Ldt~~~~~~~~~~~ 142 (256)
T cd07401 67 ILKESSVINKEKWFDIRGNHDLFNIPSLDSENNYYRKYSATG----RDGSFSFSHTTRFGNYSFIGVDPTLFPGPKRPFN 142 (256)
T ss_pred HHHHhCCCCcceEEEeCCCCCcCCCCCccchhhHHHHhheec----CCCccceEEEecCCCEEEEEEcCccCCCCCCCCc
Confidence 776643 2689999999999964332222333333331100 11122333 3459999999999642
Q ss_pred --CCCCHHHHHHHHHHHhcccCCCCCEEEEEeCCCCccCCCCCCchhHHHHHHHHHHHHHcCCcEEEEccccCceeeeec
Q 009637 341 --YDKSGHQYKWLEKDLANVDRSVTPWLVATWHPPWYSSYSSHYREAECMRVEMEALLYSYGVDIVFNGHVHAYERSNRV 418 (530)
Q Consensus 341 --~~~~~~Q~~WL~~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~k~~VdlvlsGH~H~yeR~~pv 418 (530)
.....+|++||+++|++.. ..+++||++|+|++...... . ...+ .+.++|++++|+++||||+|.+++..|+
T Consensus 143 ~~g~l~~~ql~wL~~~L~~~~--~~~~~IV~~HhP~~~~~~~~-~--~~~~-~~~~ll~~~~v~~vl~GH~H~~~~~~p~ 216 (256)
T cd07401 143 FFGSLDKKLLDRLEKELEKST--NSNYTIWFGHYPTSTIISPS-A--KSSS-KFKDLLKKYNVTAYLCGHLHPLGGLEPV 216 (256)
T ss_pred eeccCCHHHHHHHHHHHHhcc--cCCeEEEEEcccchhccCCC-c--chhH-HHHHHHHhcCCcEEEeCCccCCCcceee
Confidence 2236899999999999863 34579999999986532211 1 1122 3899999999999999999999996665
No 13
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=99.87 E-value=2.5e-20 Score=188.00 Aligned_cols=191 Identities=19% Similarity=0.264 Sum_probs=123.8
Q ss_pred CeEEEEEccCCCCC---------Ch----HHHHHHHHhC--CCCEEEEcCccccccccccCCCCCcccccCCCCCCcccc
Q 009637 198 PKRIAIVGDLGLTY---------NT----TCTINHMSSN--EPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHET 262 (530)
Q Consensus 198 ~~rf~v~gD~g~~~---------~~----~~~~~~l~~~--~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~ 262 (530)
++||++++|+|... +. .++++++.+. +|||||++||++. +++
T Consensus 14 ~~~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~~~~~D~vvitGDl~~------~~~----------------- 70 (275)
T PRK11148 14 RVRILQITDTHLFADEHETLLGVNTWESYQAVLEAIRAQQHEFDLIVATGDLAQ------DHS----------------- 70 (275)
T ss_pred CEEEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHHhhCCCCCEEEECCCCCC------CCC-----------------
Confidence 69999999999732 11 3345555543 6999999999994 222
Q ss_pred chHHHHHHHHHHHHhhhcCCeEEccCCccccccccccchHHHhhhcCCCCCCCCCCCcceEEEEcCcEEEEEEcccccC-
Q 009637 263 YQPRWDYWGRFMQNLVSKVPIMVVEGNHEIEAQAGNQTFVAYSSRFAFPSEESGSLSSFYYSFNAGGIHFIMLGAYISY- 341 (530)
Q Consensus 263 y~~~wd~~~~~l~~l~~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~Ldt~~~~- 341 (530)
...+..+.+.++.+ .+|+++++||||... .+..+.....+ ...++.+..++++||+||+....
T Consensus 71 -~~~~~~~~~~l~~l--~~Pv~~v~GNHD~~~-----~~~~~~~~~~~--------~~~~~~~~~~~~~~i~Lds~~~g~ 134 (275)
T PRK11148 71 -SEAYQHFAEGIAPL--RKPCVWLPGNHDFQP-----AMYSALQDAGI--------SPAKHVLIGEHWQILLLDSQVFGV 134 (275)
T ss_pred -HHHHHHHHHHHhhc--CCcEEEeCCCCCChH-----HHHHHHhhcCC--------CccceEEecCCEEEEEecCCCCCC
Confidence 23455566666665 689999999999842 12222211111 12234445567999999996432
Q ss_pred ---CCCHHHHHHHHHHHhcccCCCCCEEEEEeCCCCccCCCCCCch-hHHHHHHHHHHHHHc-CCcEEEEccccCceeee
Q 009637 342 ---DKSGHQYKWLEKDLANVDRSVTPWLVATWHPPWYSSYSSHYRE-AECMRVEMEALLYSY-GVDIVFNGHVHAYERSN 416 (530)
Q Consensus 342 ---~~~~~Q~~WL~~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~-~~~~r~~l~~ll~k~-~VdlvlsGH~H~yeR~~ 416 (530)
..+.+|++||+++|++... .+-+|+++|+|+... ....+. .....+++.++++++ +|+++|+||+|.....
T Consensus 135 ~~G~l~~~ql~wL~~~L~~~~~--~~~vv~~hH~P~~~~-~~~~d~~~l~n~~~l~~ll~~~~~v~~vl~GH~H~~~~~- 210 (275)
T PRK11148 135 PHGELSEYQLEWLERKLADAPE--RHTLVLLHHHPLPAG-CAWLDQHSLRNAHELAEVLAKFPNVKAILCGHIHQELDL- 210 (275)
T ss_pred cCCEeCHHHHHHHHHHHhhCCC--CCeEEEEcCCCCCCC-cchhhccCCCCHHHHHHHHhcCCCceEEEecccChHHhc-
Confidence 2368999999999998642 232555555665432 211111 111346899999998 8999999999986543
Q ss_pred ecccCccCCCCcEEEEeCCCcc
Q 009637 417 RVFNYTLDPCGPVHITIGDGGN 438 (530)
Q Consensus 417 pv~~~~~~~~G~vyIv~G~gG~ 438 (530)
..+|+.++++++.+.
T Consensus 211 -------~~~gi~~~~~ps~~~ 225 (275)
T PRK11148 211 -------DWNGRRLLATPSTCV 225 (275)
T ss_pred -------eECCEEEEEcCCCcC
Confidence 236888887776654
No 14
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=99.81 E-value=2.3e-19 Score=174.33 Aligned_cols=150 Identities=19% Similarity=0.255 Sum_probs=108.9
Q ss_pred eEEEEEccCCCCCC-h----HH----HHHHHHhCCCCEEEEcCccccccccccCCCCCcccccCCCCCCccccchHHHHH
Q 009637 199 KRIAIVGDLGLTYN-T----TC----TINHMSSNEPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQPRWDY 269 (530)
Q Consensus 199 ~rf~v~gD~g~~~~-~----~~----~~~~l~~~~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~~~wd~ 269 (530)
|||++++|+|.... . .+ +++.+.+.+||+|+++||+++. +. ...+|+.
T Consensus 1 f~~~~~~D~q~~~~~~~~~~~~~~~~i~~~~~~~~~d~iv~~GDl~~~------~~-----------------~~~~~~~ 57 (214)
T cd07399 1 FTLAVLPDTQYYTESYPEVFDAQTDWIVDNAEALNIAFVLHLGDIVDD------GD-----------------NDAEWEA 57 (214)
T ss_pred CEEEEecCCCcCCcCCHHHHHHHHHHHHHHHHHcCCCEEEECCCccCC------CC-----------------CHHHHHH
Confidence 58999999997533 1 12 2334445689999999999952 11 0246888
Q ss_pred HHHHHHHhh-hcCCeEEccCCccccccccccchHHHhhhcCCCCCCCCCCCcceEEEEcCcEEEEEEcccccCCCCHHHH
Q 009637 270 WGRFMQNLV-SKVPIMVVEGNHEIEAQAGNQTFVAYSSRFAFPSEESGSLSSFYYSFNAGGIHFIMLGAYISYDKSGHQY 348 (530)
Q Consensus 270 ~~~~l~~l~-~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~Ldt~~~~~~~~~Q~ 348 (530)
+.+.++.+. ..+|+++++||||. ++.+|+ ....+|+
T Consensus 58 ~~~~~~~l~~~~~p~~~~~GNHD~---------------------------------------~~~ld~----~~~~~ql 94 (214)
T cd07399 58 ADKAFARLDKAGIPYSVLAGNHDL---------------------------------------VLALEF----GPRDEVL 94 (214)
T ss_pred HHHHHHHHHHcCCcEEEECCCCcc---------------------------------------hhhCCC----CCCHHHH
Confidence 888888886 67999999999992 233333 2358999
Q ss_pred HHHHHHHhcccCCCCCEEEEEeCCCCccCCCCCCch-----hHHHHHHHHHHHHHc-CCcEEEEccccCceeeee
Q 009637 349 KWLEKDLANVDRSVTPWLVATWHPPWYSSYSSHYRE-----AECMRVEMEALLYSY-GVDIVFNGHVHAYERSNR 417 (530)
Q Consensus 349 ~WL~~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~-----~~~~r~~l~~ll~k~-~VdlvlsGH~H~yeR~~p 417 (530)
+||++.|++.. ..++|+++|+|++......... ....++.|++|++++ +|++||+||+|.+.+...
T Consensus 95 ~WL~~~L~~~~---~~~~iv~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~V~~v~~GH~H~~~~~~~ 166 (214)
T cd07399 95 QWANEVLKKHP---DRPAILTTHAYLNCDDSRPDSIDYDSDVNDGQQIWDKLVKKNDNVFMVLSGHVHGAGRTTL 166 (214)
T ss_pred HHHHHHHHHCC---CCCEEEEecccccCCCCcCcccccccccccHHHHHHHHHhCCCCEEEEEccccCCCceEEE
Confidence 99999999853 2348999999988654321111 123456788999999 799999999999988753
No 15
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=99.78 E-value=3.5e-18 Score=174.11 Aligned_cols=192 Identities=20% Similarity=0.281 Sum_probs=127.8
Q ss_pred EEccCCCCCC---hHHHHHHHHhC--CCCEEEEcCccccccccccCCCCCcccccCCCCCCccccchH--HHHHHHHHHH
Q 009637 203 IVGDLGLTYN---TTCTINHMSSN--EPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQP--RWDYWGRFMQ 275 (530)
Q Consensus 203 v~gD~g~~~~---~~~~~~~l~~~--~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~~--~wd~~~~~l~ 275 (530)
-+|+.++... ..++++.+.+. +|||||++||+++.+.+... .+ ... .+..+.+.++
T Consensus 42 ~~G~~~CD~p~~l~~s~l~~i~~~~~~~dfii~tGD~v~h~~~~~~----------------~~-~~~~~~~~~~~~~l~ 104 (296)
T cd00842 42 PWGDYGCDSPWRLVESALEAIKKNHPKPDFILWTGDLVRHDVDEQT----------------PE-TLVLISISNLTSLLK 104 (296)
T ss_pred CCcCcCCCCcHHHHHHHHHHHHHhCCCCCEEEEcCCCCCCCchhhc----------------hh-HHHHHHHHHHHHHHH
Confidence 3566664422 24567777776 89999999999975432100 00 011 2455666677
Q ss_pred HhhhcCCeEEccCCcccccccc-------ccchHHHhhhcC--CCCCCC-CCCCcceEEEE-cCcEEEEEEcccccC---
Q 009637 276 NLVSKVPIMVVEGNHEIEAQAG-------NQTFVAYSSRFA--FPSEES-GSLSSFYYSFN-AGGIHFIMLGAYISY--- 341 (530)
Q Consensus 276 ~l~~~vP~~~v~GNHD~~~~~~-------~~~f~~y~~~f~--~P~~~~-~~~~~~yYsf~-~G~v~fI~Ldt~~~~--- 341 (530)
.....+|+++++||||...... ...+..+...|. ++.+.. ....+.||++. .++++||+|||....
T Consensus 105 ~~~~~~pv~~~~GNHD~~p~~~~~~~~~~~~~~~~~~~~w~~~l~~~~~~~~~~ggYY~~~~~~~l~vI~Lnt~~~~~~~ 184 (296)
T cd00842 105 KAFPDTPVYPALGNHDSYPVNQFPPNNSPSWLYDALAELWKSWLPEEAEETFKKGGYYSVPVKPGLRVISLNTNLYYKKN 184 (296)
T ss_pred HhCCCCCEEEcCCCCCCCcccccCCcccccHHHHHHHHHHHhhcCHHHHHHhhcceEEEEEcCCCeEEEEEeCccccccC
Confidence 7778999999999999975421 122333333332 332111 11346789999 899999999996432
Q ss_pred --------CCCHHHHHHHHHHHhcccCCCCCEEEEEeCCCCccCCCCCCchhHHHHHHHHHHHHHcC--CcEEEEccccC
Q 009637 342 --------DKSGHQYKWLEKDLANVDRSVTPWLVATWHPPWYSSYSSHYREAECMRVEMEALLYSYG--VDIVFNGHVHA 411 (530)
Q Consensus 342 --------~~~~~Q~~WL~~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~k~~--VdlvlsGH~H~ 411 (530)
....+|++||+++|+++.+++. .++|++|+|+....... ....+++|.+|+.+|. |.++|+||+|.
T Consensus 185 ~~~~~~~~~~~~~Ql~WL~~~L~~a~~~~~-~v~I~~HiPp~~~~~~~---~~~~~~~~~~ii~~y~~~i~~~~~GH~H~ 260 (296)
T cd00842 185 FWLLGSNETDPAGQLQWLEDELQEAEQAGE-KVWIIGHIPPGVNSYDT---LENWSERYLQIINRYSDTIAGQFFGHTHR 260 (296)
T ss_pred hhhhccCCCCHHHHHHHHHHHHHHHHHCCC-eEEEEeccCCCCccccc---chHHHHHHHHHHHHHHHhhheeeeccccc
Confidence 1247899999999999754433 37788899987653221 1345788999999997 78899999999
Q ss_pred ceee
Q 009637 412 YERS 415 (530)
Q Consensus 412 yeR~ 415 (530)
.+..
T Consensus 261 d~~~ 264 (296)
T cd00842 261 DEFR 264 (296)
T ss_pred ceEE
Confidence 8765
No 16
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=99.73 E-value=1.1e-17 Score=152.07 Aligned_cols=188 Identities=23% Similarity=0.277 Sum_probs=100.5
Q ss_pred eEEEEEccCCCCCChH-----HHHHHHHhCCCCEEEEcCccccccccccCCCCCcccccCCCCCCccccchHHHHHHH-H
Q 009637 199 KRIAIVGDLGLTYNTT-----CTINHMSSNEPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQPRWDYWG-R 272 (530)
Q Consensus 199 ~rf~v~gD~g~~~~~~-----~~~~~l~~~~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~~~wd~~~-~ 272 (530)
+||+++||+|...... .......+.++|+||++||+++.... ...+.... .
T Consensus 1 ~ri~~isD~H~~~~~~~~~~~~~~~~~~~~~~d~ii~~GD~~~~~~~-----------------------~~~~~~~~~~ 57 (200)
T PF00149_consen 1 MRILVISDLHGGYDDDSDAFRKLDEIAAENKPDFIIFLGDLVDGGNP-----------------------SEEWRAQFWF 57 (200)
T ss_dssp EEEEEEEBBTTTHHHHCHHHHHHHHHHHHTTTSEEEEESTSSSSSSH-----------------------HHHHHHHHHH
T ss_pred CeEEEEcCCCCCCcchhHHHHHHHHHhccCCCCEEEeeccccccccc-----------------------cccchhhhcc
Confidence 6999999999875433 22333456899999999999964210 11111111 1
Q ss_pred HHHHhhhcCCeEEccCCccccccccccchHHHhhhcCC-CCCCCCCCCcceEEEEcCcEEEEEEcccccCCCCH---HHH
Q 009637 273 FMQNLVSKVPIMVVEGNHEIEAQAGNQTFVAYSSRFAF-PSEESGSLSSFYYSFNAGGIHFIMLGAYISYDKSG---HQY 348 (530)
Q Consensus 273 ~l~~l~~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~-P~~~~~~~~~~yYsf~~G~v~fI~Ldt~~~~~~~~---~Q~ 348 (530)
........+|+++++||||................... .........+......................... .++
T Consensus 58 ~~~~~~~~~~~~~~~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (200)
T PF00149_consen 58 FIRLLNPKIPVYFILGNHDYYSGNSFYGFYDYQFEDYYGNYNYYYSYFNNKVIFDNDNFWFNSGNNEYPDYGMEAQQEWW 137 (200)
T ss_dssp HHHHHHTTTTEEEEE-TTSSHHHHHHHHHHHHHHSSEEECSSEEECTESSEEEEEETTEEEEEHCCHTHHSEHHHHHHHH
T ss_pred chhhhhccccccccccccccceeccccccccccccccccccccccccCcceeeecccccccccccccccccccccchhcc
Confidence 23445678999999999999743211111111111100 00000000000011111222222222211111222 333
Q ss_pred HHHHHHHhcccCCCCCEEEEEeCCCCccCCCCCCch--hHHHHHHHHHHHHHcCCcEEEEccccCc
Q 009637 349 KWLEKDLANVDRSVTPWLVATWHPPWYSSYSSHYRE--AECMRVEMEALLYSYGVDIVFNGHVHAY 412 (530)
Q Consensus 349 ~WL~~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~--~~~~r~~l~~ll~k~~VdlvlsGH~H~y 412 (530)
.|+...++. ...+++|+++|+|+++........ ....++.+..++.+++|+++|+||+|.|
T Consensus 138 ~~~~~~~~~---~~~~~~iv~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~GH~H~~ 200 (200)
T PF00149_consen 138 LWLLLLLEA---KNDDPVIVFTHHPPYSSSSDSSSYGNESKGREALEELLKKYNVDLVLSGHTHRY 200 (200)
T ss_dssp HHHHHHHHE---EEESEEEEEESSSSSTTSSSTHHHSSEEEHHHHHHHHHHHTTCSEEEEESSSSE
T ss_pred ccccccccc---ccccceeEEEecCCCCccccccccchhhccHHHHHHHHhhCCCCEEEeCceecC
Confidence 333333333 446789999999999865432110 1235778999999999999999999986
No 17
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=99.69 E-value=9.3e-16 Score=152.78 Aligned_cols=170 Identities=19% Similarity=0.250 Sum_probs=110.7
Q ss_pred HHHHHHHHh-CCCCEEEEcCccccccccccCCCCCcccccCCCCCCccccchHHHH----HHHHHHHHhhhcCCeEEccC
Q 009637 214 TCTINHMSS-NEPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQPRWD----YWGRFMQNLVSKVPIMVVEG 288 (530)
Q Consensus 214 ~~~~~~l~~-~~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~~~wd----~~~~~l~~l~~~vP~~~v~G 288 (530)
++.+..+.+ .+||+|+++||++. .|... -..+|. .|.+.+.++...+|++.++|
T Consensus 34 r~~~~~~~~~l~PD~vv~lGDL~d------~G~~~---------------~~~~~~~~~~rf~~i~~~~~~~~pv~~VpG 92 (257)
T cd08163 34 RRNWRYMQKQLKPDSTIFLGDLFD------GGRDW---------------ADEYWKKEYNRFMRIFDPSPGRKMVESLPG 92 (257)
T ss_pred HHHHHHHHHhcCCCEEEEeccccc------CCeeC---------------cHHHHHHHHHHHHHHhcCCCccceEEEeCC
Confidence 444555554 58999999999985 23310 023443 33333333333579999999
Q ss_pred Ccccccccc--ccchHHHhhhcCCCCCCCCCCCcceEEEEcCcEEEEEEcccccC-----CCCHHHHHHHHHHHhcccCC
Q 009637 289 NHEIEAQAG--NQTFVAYSSRFAFPSEESGSLSSFYYSFNAGGIHFIMLGAYISY-----DKSGHQYKWLEKDLANVDRS 361 (530)
Q Consensus 289 NHD~~~~~~--~~~f~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~Ldt~~~~-----~~~~~Q~~WL~~~L~~~~r~ 361 (530)
|||+..... ......|.+.|. ..+|+|++|+++||+||+.... ....+|.+||++.|++....
T Consensus 93 NHDig~~~~~~~~~~~rf~~~Fg----------~~~~~~~~~~~~fV~Lds~~l~~~~~~~~~~~~~~~l~~~l~~~~~~ 162 (257)
T cd08163 93 NHDIGFGNGVVLPVRQRFEKYFG----------PTSRVIDVGNHTFVILDTISLSNKDDPDVYQPPREFLHSFSAMKVKS 162 (257)
T ss_pred CcccCCCCCCCHHHHHHHHHHhC----------CCceEEEECCEEEEEEccccccCCcccccchhHHHHHHhhhhccCCC
Confidence 999853321 123455666662 2368999999999999995321 23568999999999875432
Q ss_pred CCCEEEEEeCCCCccCCCCCCc---hh------------H-HH-HHHHHHHHHHcCCcEEEEccccCceeee
Q 009637 362 VTPWLVATWHPPWYSSYSSHYR---EA------------E-CM-RVEMEALLYSYGVDIVFNGHVHAYERSN 416 (530)
Q Consensus 362 ~~pwvIv~~H~P~y~s~~~~~~---~~------------~-~~-r~~l~~ll~k~~VdlvlsGH~H~yeR~~ 416 (530)
.| +|++.|+|+|.......+ +. + .+ .+.-..||.+.+..+||+||+|.|=...
T Consensus 163 -~p-~ILl~H~Plyr~~~~~cg~~re~~~~~~~~~g~~yq~~l~~~~s~~il~~~~P~~vfsGhdH~~C~~~ 232 (257)
T cd08163 163 -KP-RILLTHVPLYRPPNTSCGPLRESKTPLPYGYGYQYQNLLEPSLSEVILKAVQPVIAFSGDDHDYCEVV 232 (257)
T ss_pred -Cc-EEEEeccccccCCCCCCCCccccCCCCCCCCCccceeecCHHHHHHHHHhhCCcEEEecCCCccceeE
Confidence 33 899999999865321100 00 0 11 2444578888899999999999987654
No 18
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=99.65 E-value=3.4e-15 Score=146.91 Aligned_cols=191 Identities=17% Similarity=0.203 Sum_probs=117.2
Q ss_pred EEEEccCCCCC-----------ChHHHHHHHHhC------CCCEEEEcCccccccccccCCCCCcccccCCCCCCccccc
Q 009637 201 IAIVGDLGLTY-----------NTTCTINHMSSN------EPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETY 263 (530)
Q Consensus 201 f~v~gD~g~~~-----------~~~~~~~~l~~~------~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y 263 (530)
|.+++|+|... +..+.++++.+. +||+|+++||+++. +.
T Consensus 1 ~~~~sDlHl~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~D~viiaGDl~~~------~~------------------ 56 (232)
T cd07393 1 IFAIADLHLNLDPTKPMDVFGPEWKNHTEKIKENWDNVVAPEDIVLIPGDISWA------MK------------------ 56 (232)
T ss_pred CeEEEeeccCCCCCCCCcccCccHHHHHHHHHHHHHhcCCCCCEEEEcCCCccC------CC------------------
Confidence 35788998762 123455555544 99999999999842 11
Q ss_pred hHHHHHHHHHHHHhhhcCCeEEccCCccccccccccchHHHhhhcCCCCCCCCCCCcceEEEEcCcEEEEEEccccc-CC
Q 009637 264 QPRWDYWGRFMQNLVSKVPIMVVEGNHEIEAQAGNQTFVAYSSRFAFPSEESGSLSSFYYSFNAGGIHFIMLGAYIS-YD 342 (530)
Q Consensus 264 ~~~wd~~~~~l~~l~~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~Ldt~~~-~~ 342 (530)
........+.++.+ ..|+++|+||||+... ....+...+. .. +..-....++.++++.|+.++.... +.
T Consensus 57 ~~~~~~~l~~l~~l--~~~v~~V~GNHD~~~~----~~~~~~~~l~--~~--~~~~~~n~~~~~~~i~i~G~~~~~~~~~ 126 (232)
T cd07393 57 LEEAKLDLAWIDAL--PGTKVLLKGNHDYWWG----SASKLRKALE--ES--RLALLFNNAYIDDDVAICGTRGWDNPGN 126 (232)
T ss_pred hHHHHHHHHHHHhC--CCCeEEEeCCccccCC----CHHHHHHHHH--hc--CeEEeccCcEEECCEEEEEEEeeCCCCC
Confidence 01222233344433 3578999999998421 1222222221 00 0000012345667899998763211 00
Q ss_pred ----------------CCHHHHHHHHHHHhcccCCC-CCEEEEEeCCCCccCCCCCCchhHHHHHHHHHHHHHcCCcEEE
Q 009637 343 ----------------KSGHQYKWLEKDLANVDRSV-TPWLVATWHPPWYSSYSSHYREAECMRVEMEALLYSYGVDIVF 405 (530)
Q Consensus 343 ----------------~~~~Q~~WL~~~L~~~~r~~-~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~k~~Vdlvl 405 (530)
...+|++||++.|+++.... ..++|++.|+|++..... .+.+..++.+++++++|
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~~~~~~~i~~~H~p~~~~~~~--------~~~~~~~~~~~~v~~vl 198 (232)
T cd07393 127 PWPPINETLKVEEDEKIFERELERLELSLKAAKKREKEKIKIVMLHYPPANENGD--------DSPISKLIEEYGVDICV 198 (232)
T ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCcCCCCC--------HHHHHHHHHHcCCCEEE
Confidence 13569999999999864322 246899999998764321 23567888999999999
Q ss_pred EccccCceeeeecccCccCCCCcEEEEeCCC
Q 009637 406 NGHVHAYERSNRVFNYTLDPCGPVHITIGDG 436 (530)
Q Consensus 406 sGH~H~yeR~~pv~~~~~~~~G~vyIv~G~g 436 (530)
+||+|.+++..|... .-+|+.|+++.++
T Consensus 199 ~GH~H~~~~~~~~~~---~~~gi~~~~~~~~ 226 (232)
T cd07393 199 YGHLHGVGRDRAING---ERGGIRYQLVSAD 226 (232)
T ss_pred ECCCCCCcccccccc---eECCEEEEEEcch
Confidence 999999998776522 2367777766554
No 19
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=99.65 E-value=4.4e-15 Score=140.25 Aligned_cols=168 Identities=18% Similarity=0.193 Sum_probs=102.4
Q ss_pred EEEEccCCCCCChHHHHHHHHhCCCCEEEEcCccccccccccCCCCCcccccCCCCCCccccchHHHHHHHHHHHHhhhc
Q 009637 201 IAIVGDLGLTYNTTCTINHMSSNEPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQPRWDYWGRFMQNLVSK 280 (530)
Q Consensus 201 f~v~gD~g~~~~~~~~~~~l~~~~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~~~wd~~~~~l~~l~~~ 280 (530)
|+++||+|........ ..+.+.++|+||++||+++. +. ......+ +.++. .+
T Consensus 1 i~~~sD~H~~~~~~~~-~~~~~~~~D~vv~~GDl~~~------~~------------------~~~~~~~-~~l~~--~~ 52 (188)
T cd07392 1 ILAISDIHGDVEKLEA-IILKAEEADAVIVAGDITNF------GG------------------KEAAVEI-NLLLA--IG 52 (188)
T ss_pred CEEEEecCCCHHHHHH-HHhhccCCCEEEECCCccCc------CC------------------HHHHHHH-HHHHh--cC
Confidence 5789999986433222 34556789999999999952 22 0111112 33433 37
Q ss_pred CCeEEccCCccccccccccchHHHhhhcCCCCCCCCCCCcceEEEEcCcEEEEEEccccc------CCCCHHHHHHHHHH
Q 009637 281 VPIMVVEGNHEIEAQAGNQTFVAYSSRFAFPSEESGSLSSFYYSFNAGGIHFIMLGAYIS------YDKSGHQYKWLEKD 354 (530)
Q Consensus 281 vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~Ldt~~~------~~~~~~Q~~WL~~~ 354 (530)
+|+++++||||.... ......... ... -..+.+++++|+.+++... .....+|++|+ +.
T Consensus 53 ~p~~~v~GNHD~~~~-----~~~~~~~~~-------~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~-~~ 117 (188)
T cd07392 53 VPVLAVPGNCDTPEI-----LGLLTSAGL-------NLH--GKVVEVGGYTFVGIGGSNPTPFNTPIELSEEEIVSD-GR 117 (188)
T ss_pred CCEEEEcCCCCCHHH-----HHhhhcCcE-------ecC--CCEEEECCEEEEEeCCCCCCCCCCccccCHHHHHHh-hh
Confidence 899999999997411 111000000 001 1245678899999987422 12367899998 45
Q ss_pred HhcccCCCCCEEEEEeCCCCccCC-CCCCchhHHHHHHHHHHHHHcCCcEEEEccccCcee
Q 009637 355 LANVDRSVTPWLVATWHPPWYSSY-SSHYREAECMRVEMEALLYSYGVDIVFNGHVHAYER 414 (530)
Q Consensus 355 L~~~~r~~~pwvIv~~H~P~y~s~-~~~~~~~~~~r~~l~~ll~k~~VdlvlsGH~H~yeR 414 (530)
|+.. ..+.+|++.|+|++... ...........+.+.+++++++++++|+||+|.-..
T Consensus 118 l~~~---~~~~~ilv~H~pp~~~~~d~~~~~~~~g~~~l~~li~~~~~~~~l~GH~H~~~~ 175 (188)
T cd07392 118 LNNL---LAKNLILVTHAPPYGTAVDRVSGGFHVGSKAIRKFIEERQPLLCICGHIHESRG 175 (188)
T ss_pred hhcc---CCCCeEEEECCCCcCCcccccCCCCccCCHHHHHHHHHhCCcEEEEeccccccc
Confidence 5442 22347888898887631 111111112346788999999999999999998643
No 20
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=99.64 E-value=2.7e-15 Score=144.02 Aligned_cols=150 Identities=21% Similarity=0.243 Sum_probs=96.4
Q ss_pred CeEEEEEccCCCCCCh------------HHHHHH-HHhCCCCEEEEcCccccccccccCCCCCcccccCCCCCCccccch
Q 009637 198 PKRIAIVGDLGLTYNT------------TCTINH-MSSNEPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQ 264 (530)
Q Consensus 198 ~~rf~v~gD~g~~~~~------------~~~~~~-l~~~~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~ 264 (530)
.+||++++|+|..... ...+++ +.+.+||+||++||+++.... . .
T Consensus 2 ~~ki~~isDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vv~~GDl~~~~~~--------------------~--~ 59 (199)
T cd07383 2 KFKILQFADLHFGEGEGTCEGCEADLKTVAFIERVLDAEKPDLVVLTGDLITGENT--------------------N--D 59 (199)
T ss_pred ceEEEEEeeecccCCCCCCCcchhhHHHHHHHHHHHhhcCCCEEEECCccccCCCC--------------------c--h
Confidence 4899999999986431 122333 335689999999999964210 0 0
Q ss_pred HHHHHHHHHHHHhh-hcCCeEEccCCccccccccccchHHHhhhcCCCCCCCCCCCcceEEEEcCcEEEEEEcccccCCC
Q 009637 265 PRWDYWGRFMQNLV-SKVPIMVVEGNHEIEAQAGNQTFVAYSSRFAFPSEESGSLSSFYYSFNAGGIHFIMLGAYISYDK 343 (530)
Q Consensus 265 ~~wd~~~~~l~~l~-~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~Ldt~~~~~~ 343 (530)
..+..+.++++++. .++|+++++||||. ....
T Consensus 60 ~~~~~~~~~~~~l~~~~~p~~~~~GNHD~-----------------------------------------------~g~l 92 (199)
T cd07383 60 NSTSALDKAVSPMIDRKIPWAATFGNHDG-----------------------------------------------YDWI 92 (199)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEECccCCC-----------------------------------------------CCCC
Confidence 12334445555553 37999999999990 1123
Q ss_pred CHHHHHHHHHHHhccc--CCCCCEEEEEeCCCCccCCCCC---------Cchh---HHHHHHH-HHHHHHcCCcEEEEcc
Q 009637 344 SGHQYKWLEKDLANVD--RSVTPWLVATWHPPWYSSYSSH---------YREA---ECMRVEM-EALLYSYGVDIVFNGH 408 (530)
Q Consensus 344 ~~~Q~~WL~~~L~~~~--r~~~pwvIv~~H~P~y~s~~~~---------~~~~---~~~r~~l-~~ll~k~~VdlvlsGH 408 (530)
...|++||+++|++.. +....+.++++|+|+....... ..+. ....+.+ ..+.+..+|+++|+||
T Consensus 93 ~~~ql~wL~~~l~~~~~~~~~~~~~l~f~H~P~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~~~v~~v~~GH 172 (199)
T cd07383 93 RPSQIEWFKETSAALKKKYGKPIPSLAFFHIPLPEYREVWEGKGKVPGINNEKVCCPKINSGLFKALLERGDVKGVFCGH 172 (199)
T ss_pred CHHHHHHHHHHHHHHhhccCCCCcceEEEecChHHHHhhhcccCCCCccCCcccCCCcCCcHHHHHHHHcCCeEEEEeCC
Confidence 5789999999999863 2234568999999876532111 1110 0112334 4445666899999999
Q ss_pred ccCceeee
Q 009637 409 VHAYERSN 416 (530)
Q Consensus 409 ~H~yeR~~ 416 (530)
+|.++...
T Consensus 173 ~H~~~~~~ 180 (199)
T cd07383 173 DHGNDFCG 180 (199)
T ss_pred CCCcceec
Confidence 99987654
No 21
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=99.64 E-value=2.6e-15 Score=148.31 Aligned_cols=176 Identities=19% Similarity=0.232 Sum_probs=107.5
Q ss_pred EEEEEccCCCCCCh-------HHHHHHHHhCCCCEEEEcCccccccccccCCCCCcccccCCCCCCccccchHHHHHHHH
Q 009637 200 RIAIVGDLGLTYNT-------TCTINHMSSNEPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQPRWDYWGR 272 (530)
Q Consensus 200 rf~v~gD~g~~~~~-------~~~~~~l~~~~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~~~wd~~~~ 272 (530)
||++++|+|..... ...++.+.+.++|+|+++||++.. . .+...+.+
T Consensus 1 ki~~iSDlH~~~~~~~~~~~l~~~~~~~~~~~~d~vv~~GDl~~~------~--------------------~~~~~~~~ 54 (239)
T TIGR03729 1 KIAFSSDLHIDLNHFDTEEMLETLAQYLKKQKIDHLHIAGDISND------F--------------------QRSLPFIE 54 (239)
T ss_pred CEEEEEeecCCCCCCCHHHHHHHHHHHHHhcCCCEEEECCccccc------h--------------------hhHHHHHH
Confidence 68999999965322 234555667889999999999941 0 01122333
Q ss_pred HHHHhhhcCCeEEccCCccccccccccchHHHhhhcCCCCCCCCCCCcceEEEEcCcEEEEEEcccccCC----------
Q 009637 273 FMQNLVSKVPIMVVEGNHEIEAQAGNQTFVAYSSRFAFPSEESGSLSSFYYSFNAGGIHFIMLGAYISYD---------- 342 (530)
Q Consensus 273 ~l~~l~~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~Ldt~~~~~---------- 342 (530)
.+..+ ..+|++.++||||..... .+..+...+. + ....+.++.+..++++|++++.+.++.
T Consensus 55 ~l~~~-~~~pv~~v~GNHD~~~~~---~~~~~~~~~~-~----~~l~~~~~~~~~~~~~~ig~~gw~d~~~~~~~~~~~~ 125 (239)
T TIGR03729 55 KLQEL-KGIKVTFNAGNHDMLKDL---TYEEIESNDS-P----LYLHNRFIDIPNTQWRIIGNNGWYDYSFSNDKTSKEI 125 (239)
T ss_pred HHHHh-cCCcEEEECCCCCCCCCC---CHHHHHhccc-h----hhhcccccccCCCceEEEeeccceecccccccCHHHH
Confidence 33332 468999999999985211 1222222110 0 011223344445778999888533320
Q ss_pred ---------------------CCHHHHHHHHHHHhcccCCCCCEEEEEeCCCCccCCC------CCCchhHH--HHHHHH
Q 009637 343 ---------------------KSGHQYKWLEKDLANVDRSVTPWLVATWHPPWYSSYS------SHYREAEC--MRVEME 393 (530)
Q Consensus 343 ---------------------~~~~Q~~WL~~~L~~~~r~~~pwvIv~~H~P~y~s~~------~~~~~~~~--~r~~l~ 393 (530)
...+|++||++.|++... .+ +|++.|+|+..... ..+..... ..+.++
T Consensus 126 ~~~~~d~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~--~~-~ivvtH~pP~~~~~~~~~~~~~~~~~~~~~~s~~l~ 202 (239)
T TIGR03729 126 LRWKKSFWFDRRIKRPMSDPERTAIVLKQLKKQLNQLDN--KQ-VIFVTHFVPHRDFIYVPMDHRRFDMFNAFLGSQHFG 202 (239)
T ss_pred HHhhhcEEeecccCCCCChHHHHHHHHHHHHHHHHhcCC--CC-EEEEEcccchHHHhcCCCCCcchhhhhhccChHHHH
Confidence 136789999999988642 22 67777877644211 11111111 247899
Q ss_pred HHHHHcCCcEEEEccccCce
Q 009637 394 ALLYSYGVDIVFNGHVHAYE 413 (530)
Q Consensus 394 ~ll~k~~VdlvlsGH~H~ye 413 (530)
+++++++|+++|+||+|.-.
T Consensus 203 ~li~~~~v~~~i~GH~H~~~ 222 (239)
T TIGR03729 203 QLLVKYEIKDVIFGHLHRRF 222 (239)
T ss_pred HHHHHhCCCEEEECCccCCC
Confidence 99999999999999999865
No 22
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=99.64 E-value=4.5e-15 Score=156.07 Aligned_cols=94 Identities=24% Similarity=0.354 Sum_probs=71.7
Q ss_pred CcceEEEE-cCcEEEEEEcccccC-----CCCHHHHHHHHHHHhcccCCCCCEEEEEeCCCCccCCCCCCc-----hhHH
Q 009637 319 SSFYYSFN-AGGIHFIMLGAYISY-----DKSGHQYKWLEKDLANVDRSVTPWLVATWHPPWYSSYSSHYR-----EAEC 387 (530)
Q Consensus 319 ~~~yYsf~-~G~v~fI~Ldt~~~~-----~~~~~Q~~WL~~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~-----~~~~ 387 (530)
+..||+|+ .++++||+|||.... ...++|++||+++|++. ..+++||++|||++.......+ ....
T Consensus 290 G~~YYSFd~~ggvrfIvLDSt~~~G~~~G~L~eeQL~WLeqeLa~a---~~k~VVVf~HHPp~s~g~~~~Dp~~pg~~~~ 366 (496)
T TIGR03767 290 GTGYYTFDIAGGVRGISMDTTNRAGGDEGSLGQTQFKWIKDTLRAS---SDTLFVLFSHHTSWSMVNELTDPVDPGEKRH 366 (496)
T ss_pred CCceEEEEeECCEEEEEEeCCCcCCCcCCccCHHHHHHHHHHHhcC---CCCCEEEEECCCCcccccccccccccccccc
Confidence 56799999 899999999996431 23799999999999974 3356999999998765432111 1112
Q ss_pred HHHHHHHHHHHc-CCcEEEEccccCceee
Q 009637 388 MRVEMEALLYSY-GVDIVFNGHVHAYERS 415 (530)
Q Consensus 388 ~r~~l~~ll~k~-~VdlvlsGH~H~yeR~ 415 (530)
..++|.++|.+| +|.++|+||+|.-...
T Consensus 367 n~~eLldLL~~ypnV~aVfsGHvH~n~i~ 395 (496)
T TIGR03767 367 LGTELVSLLLEHPNVLAWVNGHTHSNKIT 395 (496)
T ss_pred CHHHHHHHHhcCCCceEEEECCcCCCccc
Confidence 356899999999 7999999999987644
No 23
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=99.57 E-value=6.1e-14 Score=141.57 Aligned_cols=179 Identities=26% Similarity=0.356 Sum_probs=119.5
Q ss_pred eEEEEEccCCCC--CC-h----HHHHHHHHhCCCCEEEEcCccccccccccCCCCCcccccCCCCCCccccchHHHHHHH
Q 009637 199 KRIAIVGDLGLT--YN-T----TCTINHMSSNEPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQPRWDYWG 271 (530)
Q Consensus 199 ~rf~v~gD~g~~--~~-~----~~~~~~l~~~~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~~~wd~~~ 271 (530)
+||++++|.|.. .. . .++++.+...+||+|+++||+++. |. ....+...
T Consensus 1 ~~i~~isD~H~~~~~~~~~~~~~~~~~~i~~~~~D~~v~tGDl~~~------~~------------------~~~~~~~~ 56 (301)
T COG1409 1 MRIAHISDLHLGALGVDSEELLEALLAAIEQLKPDLLVVTGDLTND------GE------------------PEEYRRLK 56 (301)
T ss_pred CeEEEEecCcccccccchHHHHHHHHHHHhcCCCCEEEEccCcCCC------CC------------------HHHHHHHH
Confidence 489999999987 22 2 234566666789999999999952 32 23345556
Q ss_pred HHHHHhhhcCCeEEccCCccccccccccchHHHhhhcCCCCCCCCCCCcceEEEEc-CcEEEEEEcccccC----CCCHH
Q 009637 272 RFMQNLVSKVPIMVVEGNHEIEAQAGNQTFVAYSSRFAFPSEESGSLSSFYYSFNA-GGIHFIMLGAYISY----DKSGH 346 (530)
Q Consensus 272 ~~l~~l~~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~~~~~~~~~yYsf~~-G~v~fI~Ldt~~~~----~~~~~ 346 (530)
++++.+....|++++|||||.... ....+...+.... ..+..... ++++++.+|+.... .....
T Consensus 57 ~~l~~~~~~~~~~~vpGNHD~~~~----~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~d~~~~~~~~G~~~~~ 125 (301)
T COG1409 57 ELLARLELPAPVIVVPGNHDARVV----NGEAFSDQFFNRY-------AVLVGACSSGGWRVIGLDSSVPGVPLGRLGAE 125 (301)
T ss_pred HHHhhccCCCceEeeCCCCcCCch----HHHHhhhhhcccC-------cceEeeccCCceEEEEecCCCCCCCCCEECHH
Confidence 667755568899999999998642 2223333331110 11111222 67899999996542 34799
Q ss_pred HHHHHHHHHhcccCCCCCEEEEEeCCCCccCCCCCCchhHHHHHHHHHHHHHcC--CcEEEEccccCc
Q 009637 347 QYKWLEKDLANVDRSVTPWLVATWHPPWYSSYSSHYREAECMRVEMEALLYSYG--VDIVFNGHVHAY 412 (530)
Q Consensus 347 Q~~WL~~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~k~~--VdlvlsGH~H~y 412 (530)
|++||++.|++........+|+++|+|..................+..++..++ |+++|+||.|..
T Consensus 126 q~~~l~~~l~~~~~~~~~~~v~~~hh~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~vl~GH~H~~ 193 (301)
T COG1409 126 QLDWLEEALAAAPERAKDTVVVLHHHPLPSPGTGVDRVALRDAGELLDVLIAHGNDVRLVLSGHIHLA 193 (301)
T ss_pred HHHHHHHHHHhCccccCceEEEecCCCCCCCCCccceeeeecchhHHHHHHhcCCceEEEEeCccccc
Confidence 999999999986433112468888888776543333332233456777888888 999999999986
No 24
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=99.55 E-value=7.5e-14 Score=126.65 Aligned_cols=132 Identities=27% Similarity=0.386 Sum_probs=92.2
Q ss_pred EEEEccCCCCCChH-----------HHHHHHHhCCCCEEEEcCccccccccccCCCCCcccccCCCCCCccccchHHHHH
Q 009637 201 IAIVGDLGLTYNTT-----------CTINHMSSNEPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQPRWDY 269 (530)
Q Consensus 201 f~v~gD~g~~~~~~-----------~~~~~l~~~~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~~~wd~ 269 (530)
|++++|+|.+.... ..++.+.+.++|+|+++||+++. +. +.+|+.
T Consensus 1 il~isD~Hl~~~~~~~~~~~~~~l~~~~~~~~~~~~d~vi~~GDl~~~------~~------------------~~~~~~ 56 (144)
T cd07400 1 ILHLSDLHFGPERKPELLALLSLLDRLLAEIKALDPDLVVITGDLTQR------GL------------------PEEFEE 56 (144)
T ss_pred CeEeCccCCCCCcchhHHHHHHHHHHHHHHHhccCCCEEEECCCCCCC------CC------------------HHHHHH
Confidence 57899999864321 13444556799999999999963 22 345677
Q ss_pred HHHHHHHhhhc-CCeEEccCCccccccccccchHHHhhhcCCCCCCCCCCCcceEEEEcCcEEEEEEcccccCCCCHHHH
Q 009637 270 WGRFMQNLVSK-VPIMVVEGNHEIEAQAGNQTFVAYSSRFAFPSEESGSLSSFYYSFNAGGIHFIMLGAYISYDKSGHQY 348 (530)
Q Consensus 270 ~~~~l~~l~~~-vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~Ldt~~~~~~~~~Q~ 348 (530)
+.++++.+... +|++.++||||.
T Consensus 57 ~~~~~~~l~~~~~~~~~v~GNHD~-------------------------------------------------------- 80 (144)
T cd07400 57 AREFLDALPAPLEPVLVVPGNHDV-------------------------------------------------------- 80 (144)
T ss_pred HHHHHHHccccCCcEEEeCCCCeE--------------------------------------------------------
Confidence 77788887544 699999999996
Q ss_pred HHHHHHHhcccCCCCCEEEEEeCCCCccCCCCCCchhHHHHHHHHHHHHHcCCcEEEEccccCceeeeecccCccCCCCc
Q 009637 349 KWLEKDLANVDRSVTPWLVATWHPPWYSSYSSHYREAECMRVEMEALLYSYGVDIVFNGHVHAYERSNRVFNYTLDPCGP 428 (530)
Q Consensus 349 ~WL~~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~k~~VdlvlsGH~H~yeR~~pv~~~~~~~~G~ 428 (530)
|+++|+|++.......... ..++.+.+++.+++++++++||+|......-. ...+++
T Consensus 81 ------------------iv~~Hhp~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~l~GH~H~~~~~~~~----~~~~~~ 137 (144)
T cd07400 81 ------------------IVVLHHPLVPPPGSGRERL-LDAGDALKLLAEAGVDLVLHGHKHVPYVGNIS----NAGGGL 137 (144)
T ss_pred ------------------EEEecCCCCCCCccccccC-CCHHHHHHHHHHcCCCEEEECCCCCcCeeecc----CCCCCE
Confidence 7777888766533211111 14567999999999999999999997654311 124567
Q ss_pred EEEEeCC
Q 009637 429 VHITIGD 435 (530)
Q Consensus 429 vyIv~G~ 435 (530)
+++.+|+
T Consensus 138 ~~~~aGs 144 (144)
T cd07400 138 VVIGAGT 144 (144)
T ss_pred EEEecCC
Confidence 7777664
No 25
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=99.50 E-value=3.5e-13 Score=131.23 Aligned_cols=187 Identities=20% Similarity=0.215 Sum_probs=113.5
Q ss_pred CeEEEEEccCCCCCC-----hHHHHHHHHhCCCCEEEEcCccccccccccCCCCCcccccCCCCCCccccchHHHHHHHH
Q 009637 198 PKRIAIVGDLGLTYN-----TTCTINHMSSNEPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQPRWDYWGR 272 (530)
Q Consensus 198 ~~rf~v~gD~g~~~~-----~~~~~~~l~~~~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~~~wd~~~~ 272 (530)
++||++++|+|.... ..+.++.+.+.+||+|+++||+++.. . ... +.+.+
T Consensus 1 ~~~i~~~sDlH~~~~~~~~~~~~~~~~~~~~~~d~vl~~GD~~~~~------~------------------~~~-~~~~~ 55 (223)
T cd07385 1 GLRIAHLSDLHLGPFVSRERLERLVEKINALKPDLVVLTGDLVDGS------V------------------DVL-ELLLE 55 (223)
T ss_pred CCEEEEEeecCCCccCCHHHHHHHHHHHhccCCCEEEEcCcccCCc------c------------------hhh-HHHHH
Confidence 479999999998643 23456666778999999999999531 1 000 34556
Q ss_pred HHHHhhhcCCeEEccCCccccccccccchHHHhhhcCCCCCCCCCCCcceEEEEcCcEEEEEEcccccCCCCHHHHHHHH
Q 009637 273 FMQNLVSKVPIMVVEGNHEIEAQAGNQTFVAYSSRFAFPSEESGSLSSFYYSFNAGGIHFIMLGAYISYDKSGHQYKWLE 352 (530)
Q Consensus 273 ~l~~l~~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~Ldt~~~~~~~~~Q~~WL~ 352 (530)
.++.+....|++.++||||....... .+........+. -..+.+..++.++..+..+.-. ......+++.
T Consensus 56 ~l~~l~~~~~v~~v~GNHD~~~~~~~-~~~~~l~~~~v~-----~L~~~~~~~~~~~~~i~i~G~~----~~~~~~~~~~ 125 (223)
T cd07385 56 LLKKLKAPLGVYAVLGNHDYYSGDEE-NWIEALESAGIT-----VLRNESVEISVGGATIGIAGVD----DGLGRRPDLE 125 (223)
T ss_pred HHhccCCCCCEEEECCCcccccCchH-HHHHHHHHcCCE-----EeecCcEEeccCCeEEEEEecc----CccccCCCHH
Confidence 66777677999999999998643211 101122111111 1123345566666544443211 1112335666
Q ss_pred HHHhcccCCCCCEEEEEeCCCCccCCCCCCchhHHHHHHHHHHHHHcCCcEEEEccccCceeeeecccCc----------
Q 009637 353 KDLANVDRSVTPWLVATWHPPWYSSYSSHYREAECMRVEMEALLYSYGVDIVFNGHVHAYERSNRVFNYT---------- 422 (530)
Q Consensus 353 ~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~k~~VdlvlsGH~H~yeR~~pv~~~~---------- 422 (530)
+.+++.+. ....|++.|.|.+.. .+.+.++|++++||+|..+...|.....
T Consensus 126 ~~~~~~~~--~~~~I~l~H~P~~~~-----------------~~~~~~~dl~l~GHtHggqi~~~~~~~~~~~~~~~~~~ 186 (223)
T cd07385 126 KALKGLDE--DDPNILLAHQPDTAE-----------------EAAAWGVDLQLSGHTHGGQIRLPGIGPLVLSKLARPYD 186 (223)
T ss_pred HHHhCCCC--CCCEEEEecCCChhH-----------------HhcccCccEEEeccCCCCEEeccccccccchhhcCccc
Confidence 77766532 345899999985421 1156799999999999999776543210
Q ss_pred ----cCCCCcEEEEeCCCcc
Q 009637 423 ----LDPCGPVHITIGDGGN 438 (530)
Q Consensus 423 ----~~~~G~vyIv~G~gG~ 438 (530)
...+..+||..|.|..
T Consensus 187 ~G~~~~~~~~~~Vs~G~G~~ 206 (223)
T cd07385 187 YGLYRKGGSQLYVSRGLGTW 206 (223)
T ss_pred ceEEEECCEEEEEcCCccCC
Confidence 0234577787777765
No 26
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=99.49 E-value=1.4e-13 Score=128.07 Aligned_cols=145 Identities=20% Similarity=0.285 Sum_probs=88.5
Q ss_pred EEEEccCCCCCChHHHH--HHHHhCCCCEEEEcCccccccccccCCCCCcccccCCCCCCccccchHHHHHHHHHHHHhh
Q 009637 201 IAIVGDLGLTYNTTCTI--NHMSSNEPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQPRWDYWGRFMQNLV 278 (530)
Q Consensus 201 f~v~gD~g~~~~~~~~~--~~l~~~~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~~~wd~~~~~l~~l~ 278 (530)
|+++||+|......... +.+.+.++|+++++||+++. +. ...+.. ......
T Consensus 1 ~~~iSDlH~~~~~~~~~~~~~~~~~~~d~li~~GDi~~~------~~------------------~~~~~~---~~~~~~ 53 (166)
T cd07404 1 IQYLSDLHLEFEDNLADLLNFPIAPDADILVLAGDIGYL------TD------------------APRFAP---LLLALK 53 (166)
T ss_pred CceEccccccCccccccccccCCCCCCCEEEECCCCCCC------cc------------------hHHHHH---HHHhhc
Confidence 57899999875432221 23345689999999999952 11 111211 233345
Q ss_pred hcCCeEEccCCccccccccccchHHHhhhcCCCCCCCCCCCcceEEEEcCcEEEEEEcccccCCC-CHHHHHHHHHHHhc
Q 009637 279 SKVPIMVVEGNHEIEAQAGNQTFVAYSSRFAFPSEESGSLSSFYYSFNAGGIHFIMLGAYISYDK-SGHQYKWLEKDLAN 357 (530)
Q Consensus 279 ~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~Ldt~~~~~~-~~~Q~~WL~~~L~~ 357 (530)
...|+++++||||.. +.|+...-+.++.. ..++++|+.+++++
T Consensus 54 ~~~~v~~v~GNHD~~------------------------------------~~~~G~~~w~~~~~~~~~~~~~~~~d~~~ 97 (166)
T cd07404 54 GFEPVIYVPGNHEFY------------------------------------VRIIGTTLWSDISLFGEAAARMRMNDFRG 97 (166)
T ss_pred CCccEEEeCCCcceE------------------------------------EEEEeeecccccCccchHHHHhCCCCCCC
Confidence 678999999999984 22232222222221 23455666665551
Q ss_pred ccCCCCCEEEEEeCCCCccCCCCCC---c-hhHHHHHHHHHHHHHcCCcEEEEccccCceee
Q 009637 358 VDRSVTPWLVATWHPPWYSSYSSHY---R-EAECMRVEMEALLYSYGVDIVFNGHVHAYERS 415 (530)
Q Consensus 358 ~~r~~~pwvIv~~H~P~y~s~~~~~---~-~~~~~r~~l~~ll~k~~VdlvlsGH~H~yeR~ 415 (530)
.+|++.|+|++....... . .....++.+.+++++++|+++++||+|.....
T Consensus 98 -------~~vv~~HhpP~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~i~GH~H~~~~~ 152 (166)
T cd07404 98 -------KTVVVTHHAPSPLSLAPQYGDSLVNAAFAVDLDDLILADPIDLWIHGHTHFNFDY 152 (166)
T ss_pred -------CEEEEeCCCCCccccCccccCCCcchhhhhccHhHHhhcCCCEEEECCccccceE
Confidence 278888888776532221 1 11234566778888999999999999987543
No 27
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=99.47 E-value=3.4e-12 Score=124.25 Aligned_cols=172 Identities=13% Similarity=0.167 Sum_probs=103.1
Q ss_pred CeEEEEEccCCCCCCh-HHHHHHHHhCCCCEEEEcCccccccccccCCCCCcccccCCCCCCccccchHHHHHHHHHHHH
Q 009637 198 PKRIAIVGDLGLTYNT-TCTINHMSSNEPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQPRWDYWGRFMQN 276 (530)
Q Consensus 198 ~~rf~v~gD~g~~~~~-~~~~~~l~~~~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~~~wd~~~~~l~~ 276 (530)
+.||++++|+|..... .+.++.+.+.++|+|+++||+++. |. ..+.+.++++.
T Consensus 4 ~~kIl~iSDiHgn~~~le~l~~~~~~~~~D~vv~~GDl~~~------g~--------------------~~~~~~~~l~~ 57 (224)
T cd07388 4 VRYVLATSNPKGDLEALEKLVGLAPETGADAIVLIGNLLPK------AA--------------------KSEDYAAFFRI 57 (224)
T ss_pred eeEEEEEEecCCCHHHHHHHHHHHhhcCCCEEEECCCCCCC------CC--------------------CHHHHHHHHHH
Confidence 6799999999975332 334444455789999999999952 21 01223344444
Q ss_pred hh-hcCCeEEccCCccccccccccchHHHhhhcC----CCCCCCCCCCcceEEEEc-CcEEEEEEcccccC--CCCHHHH
Q 009637 277 LV-SKVPIMVVEGNHEIEAQAGNQTFVAYSSRFA----FPSEESGSLSSFYYSFNA-GGIHFIMLGAYISY--DKSGHQY 348 (530)
Q Consensus 277 l~-~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~----~P~~~~~~~~~~yYsf~~-G~v~fI~Ldt~~~~--~~~~~Q~ 348 (530)
+. ..+|+++++||||... .......|. +|..- ..... ...+ |+++|+.|+....+ ..+++|.
T Consensus 58 l~~l~~pv~~V~GNhD~~v------~~~l~~~~~~~~~~p~~~--~lh~~--~~~~~g~~~~~GlGGs~~~~~e~sE~e~ 127 (224)
T cd07388 58 LGEAHLPTFYVPGPQDAPL------WEYLREAYNAELVHPEIR--NVHET--FAFWRGPYLVAGVGGEIADEGEPEEHEA 127 (224)
T ss_pred HHhcCCceEEEcCCCChHH------HHHHHHHhcccccCccce--ecCCC--eEEecCCeEEEEecCCcCCCCCcCHHHH
Confidence 42 2589999999999620 111111221 12210 01111 2334 56999999875433 3356652
Q ss_pred ----HHHHH-HHhcccCCCCCEEEEEeCCCCccCCCCCCchhHHHHHHHHHHHHHcCCcEEEEcccc
Q 009637 349 ----KWLEK-DLANVDRSVTPWLVATWHPPWYSSYSSHYREAECMRVEMEALLYSYGVDIVFNGHVH 410 (530)
Q Consensus 349 ----~WL~~-~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~k~~VdlvlsGH~H 410 (530)
+||.+ .|+...+...+..|+++|.|+|.....|- -...+.+++++++..+++|||+|
T Consensus 128 ~~~~~~~~~~~l~~~~~~~~~~~VLv~H~PP~g~g~~h~-----GS~alr~~I~~~~P~l~i~GHih 189 (224)
T cd07388 128 LRYPAWVAEYRLKALWELKDYRKVFLFHTPPYHKGLNEQ-----GSHEVAHLIKTHNPLVVLVGGKG 189 (224)
T ss_pred hhhhhhHHHHHHHHHHhCCCCCeEEEECCCCCCCCCCcc-----CHHHHHHHHHHhCCCEEEEcCCc
Confidence 56533 22222111233589999999998743232 23577889999999999999999
No 28
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=99.45 E-value=1.1e-12 Score=127.40 Aligned_cols=185 Identities=16% Similarity=0.158 Sum_probs=106.4
Q ss_pred EEEEEccCCCCCCh----------------HHHHHHHHhCCCCEEEEcCccccccccccCCCCCcccccCCCCCCccccc
Q 009637 200 RIAIVGDLGLTYNT----------------TCTINHMSSNEPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETY 263 (530)
Q Consensus 200 rf~v~gD~g~~~~~----------------~~~~~~l~~~~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y 263 (530)
||++++|+|.+... ..+++.+.+.+||+|+++||++.... ..
T Consensus 1 ~i~~~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~GD~~~~~~----~~------------------ 58 (223)
T cd00840 1 RFLHTADWHLGKPLKGLSRDRRREDQFEAFEEIVELAIEEKVDFVLIAGDLFDSNN----PS------------------ 58 (223)
T ss_pred CeEEeccccCCccccCcCcccchHHHHHHHHHHHHHHHhcCCCEEEECCcccCCCC----CC------------------
Confidence 68999999986421 33344555679999999999985311 00
Q ss_pred hHHHHHHHHHHHHhh-hcCCeEEccCCccccccccccchHHHhhhcCCCCC--CCCCCCcceEEEEcCcEEEEEEccccc
Q 009637 264 QPRWDYWGRFMQNLV-SKVPIMVVEGNHEIEAQAGNQTFVAYSSRFAFPSE--ESGSLSSFYYSFNAGGIHFIMLGAYIS 340 (530)
Q Consensus 264 ~~~wd~~~~~l~~l~-~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~--~~~~~~~~yYsf~~G~v~fI~Ldt~~~ 340 (530)
...+..+.+.++.+. ..+|+++++||||....... ............. ...........++.+++.|+.++....
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~v~~~~GNHD~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~g~~~~~~ 136 (223)
T cd00840 59 PEALELLIEALRRLKEAGIPVFIIAGNHDSPSRLGA--LSPLLALSGLHLVGVEEDVLTPLLLPKGGTGVAIYGLPYLRR 136 (223)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEecCCCCCcccccc--ccchHhhCcEEEEcccCcceeEEEeccCCeEEEEEECCCCCH
Confidence 123556666776664 58999999999998643211 1111111000000 000011223334455688888875422
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCEEEEEeCCCCccCCCCCCchhHHHHHHHHHHHHHcCCcEEEEccccCceee
Q 009637 341 YDKSGHQYKWLEKDLANVDRSVTPWLVATWHPPWYSSYSSHYREAECMRVEMEALLYSYGVDIVFNGHVHAYERS 415 (530)
Q Consensus 341 ~~~~~~Q~~WL~~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~k~~VdlvlsGH~H~yeR~ 415 (530)
. ....+.+++++.+.+.. .....|++.|.|+.......... .......+...++|++++||.|..+..
T Consensus 137 ~-~~~~~~~~~~~~~~~~~--~~~~~Il~~H~~~~~~~~~~~~~----~~~~~~~~~~~~~d~v~~GH~H~~~~~ 204 (223)
T cd00840 137 S-RLRDLLADAELRPRPLD--PDDFNILLLHGGVAGAGPSDSER----APFVPEALLPAGFDYVALGHIHRPQII 204 (223)
T ss_pred H-HHHHHHHHHHHHhhccC--CCCcEEEEEeeeeecCCCCcccc----cccCcHhhcCcCCCEEECCCcccCeee
Confidence 1 12334455555555543 33458999999976543221110 123344566789999999999987653
No 29
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.
Probab=99.43 E-value=3.5e-12 Score=133.16 Aligned_cols=94 Identities=19% Similarity=0.234 Sum_probs=67.8
Q ss_pred CcceEEEE-cCcE--EEEEEccccc-----------CCCCHHHHHHHHHHHhcccCCCCCEEEEEeCCCCccCCCCCC--
Q 009637 319 SSFYYSFN-AGGI--HFIMLGAYIS-----------YDKSGHQYKWLEKDLANVDRSVTPWLVATWHPPWYSSYSSHY-- 382 (530)
Q Consensus 319 ~~~yYsf~-~G~v--~fI~Ldt~~~-----------~~~~~~Q~~WL~~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~-- 382 (530)
+..||+|+ .|++ |+|+||+... ...+.+|++||+++|+.+.. +.+++|+++|+|+.+......
T Consensus 291 G~~yYsFd~~g~vplrvIvLDSt~~~~~~s~pG~~~G~Ld~eQLaWLe~~La~a~a-~~p~VVV~hHpPi~t~gi~~md~ 369 (492)
T TIGR03768 291 DFACYSFVPKSDVPLKVIVLDDTQSEHDGSHDIHGHGSLDAKRWDWLKAELARGQA-DGQLMIIAAHIPIAVSPIGSEME 369 (492)
T ss_pred CcceeEEecCCCcceEEEEECCCccccccCCCCCcceeeCHHHHHHHHHHHHhCcC-CCceEEEEeCCCcccCCccchhh
Confidence 34599999 6855 9999998641 11369999999999998753 457899999999876322111
Q ss_pred -c----------hhHHHHHHHHHHHHHc-CCcEEEEccccCce
Q 009637 383 -R----------EAECMRVEMEALLYSY-GVDIVFNGHVHAYE 413 (530)
Q Consensus 383 -~----------~~~~~r~~l~~ll~k~-~VdlvlsGH~H~ye 413 (530)
. +......+|.++|.+| +|.++||||.|.-.
T Consensus 370 w~~~~~~~~~~L~n~~~~~eLlaLL~~hPnVla~LsGHvHrn~ 412 (492)
T TIGR03768 370 WWLGAADANPDLQNAVSLTGLVTTLQKYPNLLMWIAGHRHLNT 412 (492)
T ss_pred hccccccccccccccccHHHHHHHHhcCCCeEEEEcCCccccc
Confidence 0 0001124799999999 69999999999643
No 30
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=99.42 E-value=7.5e-12 Score=126.01 Aligned_cols=164 Identities=16% Similarity=0.144 Sum_probs=97.4
Q ss_pred CeEEEEEccCCCCCC-----hHHHHHHHHhCCCCEEEEcCccccccccccCCCCCcccccCCCCCCccccchHHHHHHHH
Q 009637 198 PKRIAIVGDLGLTYN-----TTCTINHMSSNEPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQPRWDYWGR 272 (530)
Q Consensus 198 ~~rf~v~gD~g~~~~-----~~~~~~~l~~~~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~~~wd~~~~ 272 (530)
++||++++|+|.... ..+.++.+.+.+||+|+++||+++.+ . ...++.+.+
T Consensus 49 ~~rI~~lSDlH~~~~~~~~~l~~~v~~i~~~~pDlVli~GD~~d~~------~------------------~~~~~~~~~ 104 (271)
T PRK11340 49 PFKILFLADLHYSRFVPLSLISDAIALGIEQKPDLILLGGDYVLFD------M------------------PLNFSAFSD 104 (271)
T ss_pred CcEEEEEcccCCCCcCCHHHHHHHHHHHHhcCCCEEEEccCcCCCC------c------------------cccHHHHHH
Confidence 699999999998632 23455666678999999999998521 1 012345667
Q ss_pred HHHHhhhcCCeEEccCCcccccccc-ccchHHHhhhcCCCCCCCCCCCcceEEEEcCc--EEEEEEcccccCCCCHHHHH
Q 009637 273 FMQNLVSKVPIMVVEGNHEIEAQAG-NQTFVAYSSRFAFPSEESGSLSSFYYSFNAGG--IHFIMLGAYISYDKSGHQYK 349 (530)
Q Consensus 273 ~l~~l~~~vP~~~v~GNHD~~~~~~-~~~f~~y~~~f~~P~~~~~~~~~~yYsf~~G~--v~fI~Ldt~~~~~~~~~Q~~ 349 (530)
.++.+.+..|+++++||||+..... ...+....+.-.+ .-..+....+..++ +.++.++........
T Consensus 105 ~L~~L~~~~pv~~V~GNHD~~~~~~~~~~~~~~l~~~gi-----~lL~n~~~~i~~~~~~i~i~G~~d~~~~~~~----- 174 (271)
T PRK11340 105 VLSPLAECAPTFACFGNHDRPVGTEKNHLIGETLKSAGI-----TVLFNQATVIATPNRQFELVGTGDLWAGQCK----- 174 (271)
T ss_pred HHHHHhhcCCEEEecCCCCcccCccchHHHHHHHHhcCc-----EEeeCCeEEEeeCCcEEEEEEecchhccCCC-----
Confidence 7777777789999999999853211 1112222211110 01123344555543 566677532111111
Q ss_pred HHHHHHhcccCCCCCEEEEEeCCCCccCCCCCCchhHHHHHHHHHHHHHcCCcEEEEccccCceeeeec
Q 009637 350 WLEKDLANVDRSVTPWLVATWHPPWYSSYSSHYREAECMRVEMEALLYSYGVDIVFNGHVHAYERSNRV 418 (530)
Q Consensus 350 WL~~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~k~~VdlvlsGH~H~yeR~~pv 418 (530)
..+.+++ +. ..|++.|.|-+- +.+.+.++|++||||+|.-|...|.
T Consensus 175 -~~~~~~~----~~-~~IlL~H~P~~~-----------------~~~~~~~~dL~lsGHTHGGQi~lP~ 220 (271)
T PRK11340 175 -PPPASEA----NL-PRLVLAHNPDSK-----------------EVMRDEPWDLMLCGHTHGGQLRVPL 220 (271)
T ss_pred -hhHhcCC----CC-CeEEEEcCCChh-----------------HhhccCCCCEEEeccccCCeEEccc
Confidence 1112222 22 478899999531 1234578999999999998876553
No 31
>PF14008 Metallophos_C: Iron/zinc purple acid phosphatase-like protein C; PDB: 3KBP_B 1KBP_B 4KBP_C 2QFP_B 2QFR_A 1XZW_B.
Probab=99.35 E-value=1.1e-12 Score=101.66 Aligned_cols=58 Identities=31% Similarity=0.512 Sum_probs=35.8
Q ss_pred CCcEEEEeCCCccccccccccCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCccceecCCcceEEEEEe
Q 009637 426 CGPVHITIGDGGNLEKMSITHADEPGNCPEPSSTPDPYMGGFCATNFTSGPAAGKFCWDRQPDYSAFRESSFGHGILEVL 505 (530)
Q Consensus 426 ~G~vyIv~G~gG~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~wsa~r~~~~G~~~l~v~ 505 (530)
.|||||++|+||+ ++.. .+.++|+||++|..+|||++|+|.
T Consensus 1 kapVhiv~G~aG~--~l~~-------------------------------------~~~~~~~wsa~r~~~~Gy~~l~v~ 41 (62)
T PF14008_consen 1 KAPVHIVVGAAGN--GLDP-------------------------------------FPYPPPEWSAFRDSEYGYGRLTVA 41 (62)
T ss_dssp TS-EEEEE--S-T-------------------------------------------B-SS--TTEEEEE---EEEEEEE-
T ss_pred CCCEEEEECcCCC--Cccc-------------------------------------ccCCCCCeeeeeccccCEEEEEEE
Confidence 4899999999999 3321 224679999999999999999999
Q ss_pred ecceeeeeeeeccCCCce
Q 009637 506 SLSLLFVPLFLQPKFNTM 523 (530)
Q Consensus 506 n~t~~~~~~~~~~~~~~~ 523 (530)
|.|||+||++.+.+ ++|
T Consensus 42 N~T~l~~e~i~~~~-g~v 58 (62)
T PF14008_consen 42 NATHLHWEFIRSDD-GSV 58 (62)
T ss_dssp SSSEEEEEEEETTS--T-
T ss_pred cCCeEEEEEEECCC-CcE
Confidence 99999998887653 443
No 32
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=99.32 E-value=1.9e-11 Score=106.93 Aligned_cols=128 Identities=29% Similarity=0.479 Sum_probs=87.6
Q ss_pred EEEccCCCCCChHHHH---HHHHhCCCCEEEEcCccccccccccCCCCCcccccCCCCCCccccchHHHHHHHHHHHHhh
Q 009637 202 AIVGDLGLTYNTTCTI---NHMSSNEPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQPRWDYWGRFMQNLV 278 (530)
Q Consensus 202 ~v~gD~g~~~~~~~~~---~~l~~~~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~~~wd~~~~~l~~l~ 278 (530)
+++||+|......... ....+.++|+|+++||+++. +. ...+..+........
T Consensus 1 ~~~gD~h~~~~~~~~~~~~~~~~~~~~~~vi~~GD~~~~------~~------------------~~~~~~~~~~~~~~~ 56 (131)
T cd00838 1 AVISDIHGNLEALEAVLEAALAAAEKPDFVLVLGDLVGD------GP------------------DPEEVLAAALALLLL 56 (131)
T ss_pred CeeecccCCccchHHHHHHHHhcccCCCEEEECCcccCC------CC------------------CchHHHHHHHHHhhc
Confidence 4689999875443332 34456799999999999963 11 011222222333446
Q ss_pred hcCCeEEccCCccccccccccchHHHhhhcCCCCCCCCCCCcceEEEEcCcEEEEEEcccccCCCCHHHHHHHHHHHhcc
Q 009637 279 SKVPIMVVEGNHEIEAQAGNQTFVAYSSRFAFPSEESGSLSSFYYSFNAGGIHFIMLGAYISYDKSGHQYKWLEKDLANV 358 (530)
Q Consensus 279 ~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~Ldt~~~~~~~~~Q~~WL~~~L~~~ 358 (530)
...|+++++||||
T Consensus 57 ~~~~~~~~~GNHD------------------------------------------------------------------- 69 (131)
T cd00838 57 LGIPVYVVPGNHD------------------------------------------------------------------- 69 (131)
T ss_pred CCCCEEEeCCCce-------------------------------------------------------------------
Confidence 7899999999999
Q ss_pred cCCCCCEEEEEeCCCCccCCCCCCchhHHHHHHHHHHHHHcCCcEEEEccccCceeeeecccCccCCCCcEEEEeC
Q 009637 359 DRSVTPWLVATWHPPWYSSYSSHYREAECMRVEMEALLYSYGVDIVFNGHVHAYERSNRVFNYTLDPCGPVHITIG 434 (530)
Q Consensus 359 ~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~k~~VdlvlsGH~H~yeR~~pv~~~~~~~~G~vyIv~G 434 (530)
|++.|.|++.............+..+..++.+.+++++|+||.|.+.+... ...+..++..|
T Consensus 70 --------i~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GH~H~~~~~~~------~~~~~~~v~~g 131 (131)
T cd00838 70 --------ILLTHGPPYDPLDELSPDEDPGSEALLELLEKYGVDLVLSGHTHVYERREP------DGGGTLYINPG 131 (131)
T ss_pred --------EEEeccCCCCCchhhcccchhhHHHHHHHHHHhCCCEEEeCCeeccccccC------CCCceEEecCC
Confidence 889999987764432222222578889999999999999999999998752 23455555443
No 33
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=99.25 E-value=4.9e-10 Score=111.97 Aligned_cols=211 Identities=23% Similarity=0.306 Sum_probs=119.2
Q ss_pred CeEEEEEccCCCCCC--------------------hHHHHHHHH-hCCCCEEEEcCccccccccccCCCCCcccccCCCC
Q 009637 198 PKRIAIVGDLGLTYN--------------------TTCTINHMS-SNEPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSK 256 (530)
Q Consensus 198 ~~rf~v~gD~g~~~~--------------------~~~~~~~l~-~~~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~ 256 (530)
+|||+.++|+|.+.. +...++++. .++||||+++||++++...
T Consensus 53 ~fKIlqvaDlH~g~g~~~~c~d~~p~~~~~csD~nTt~F~~rvL~sE~PDlVVfTGD~i~g~~t---------------- 116 (379)
T KOG1432|consen 53 TFKILQVADLHFGFGRETRCRDVLPSEEACCSDLNTTNFVSRVLASEKPDLVVFTGDNIFGHST---------------- 116 (379)
T ss_pred ceEEEEeeccccccCCCccccccCcchhhhhcCccHHHHHHHHHhccCCCEEEEeCCccccccc----------------
Confidence 699999999997632 234466654 5799999999999974210
Q ss_pred CCccccchHHHHHHHHHHHHh-hhcCCeEEccCCccccccccccchHHHhhhcCCCCCCCC---CCCcceEEEEcCc---
Q 009637 257 TPIHETYQPRWDYWGRFMQNL-VSKVPIMVVEGNHEIEAQAGNQTFVAYSSRFAFPSEESG---SLSSFYYSFNAGG--- 329 (530)
Q Consensus 257 ~~~~~~y~~~wd~~~~~l~~l-~~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~~~~---~~~~~yYsf~~G~--- 329 (530)
+..-..+.+.++|. ..++||.++.||||-+..........+... +|..-+. ..+..+--..+|+
T Consensus 117 -------~Da~~sl~kAvaP~I~~~IPwA~~lGNHDdes~ltr~ql~~~i~~--lP~s~~~v~p~dg~~~~~~g~gnyn~ 187 (379)
T KOG1432|consen 117 -------QDAATSLMKAVAPAIDRKIPWAAVLGNHDDESDLTRLQLMKFISK--LPYSLSQVNPPDGHMYIIDGFGNYNL 187 (379)
T ss_pred -------HhHHHHHHHHhhhHhhcCCCeEEEecccccccccCHHHHHHHHhc--CCCccccCCCcccceeeeecccceEE
Confidence 11113345666664 689999999999998755433333333332 2322110 0111111111221
Q ss_pred ---------------EEEEEEccccc---------CC-CCHHHHHHHHHHHhc---ccCCCCC-EEEEEeCCCCc--cCC
Q 009637 330 ---------------IHFIMLGAYIS---------YD-KSGHQYKWLEKDLAN---VDRSVTP-WLVATWHPPWY--SSY 378 (530)
Q Consensus 330 ---------------v~fI~Ldt~~~---------~~-~~~~Q~~WL~~~L~~---~~r~~~p-wvIv~~H~P~y--~s~ 378 (530)
..++.||+..+ |+ ....|.+||+..-++ .+..-.| --++++|.|+- ...
T Consensus 188 ~i~~~~ds~~~~~sv~~lyfld~~~~~s~~~~~~~Ydwik~sq~~wl~~~~~~~~~~~~~~~P~p~La~~HIP~~E~~~~ 267 (379)
T KOG1432|consen 188 QIEGAIDSELENKSVFNLYFLDSSSYTSVPPLLPGYDWIKESQLEWLSDTSKEFKEPNSKYNPQPGLAFFHIPLPEFLEL 267 (379)
T ss_pred EeccCCCcccccCceeeEEEEecCCcccccccccCccchhhhhHHHHhhhhhhhhcccCccCCCCceEEEEcccHHHhhc
Confidence 12344554321 11 267899999987732 1112223 36888999852 221
Q ss_pred CC------CCchh---HHHHHHHHHHHH-HcCCcEEEEccccCceeeeecccCccCCCCcEEEEeCCCcccc
Q 009637 379 SS------HYREA---ECMRVEMEALLY-SYGVDIVFNGHVHAYERSNRVFNYTLDPCGPVHITIGDGGNLE 440 (530)
Q Consensus 379 ~~------~~~~~---~~~r~~l~~ll~-k~~VdlvlsGH~H~yeR~~pv~~~~~~~~G~vyIv~G~gG~~e 440 (530)
.. ..++. ......+...|. ..+|++|++||+|.-.--.+. .|.+++.=|+|+..-
T Consensus 268 ~~~tp~~g~~~E~~~~~~~~sg~~~~L~~r~~Vk~vf~GHdHvNDfC~~~-------k~~~wlCygGgaGyg 332 (379)
T KOG1432|consen 268 ESKTPLIGVFQEGVSASKHNSGFLTTLVNRGNVKGVFCGHDHVNDFCGEL-------KGELWLCYGGGAGYG 332 (379)
T ss_pred cCCCcccceeeccccccccccHHHHHHHhccCcceEEeccccccceeccc-------CCeEEEEecCCCccC
Confidence 11 11111 112245556666 778999999999986554432 455777777665543
No 34
>cd07389 MPP_PhoD Bacillus subtilis PhoD and related proteins, metallophosphatase domain. PhoD (also known as alkaline phosphatase D/APaseD in Bacillus subtilis) is a secreted phosphodiesterase encoded by phoD of the Pho regulon in Bacillus subtilis. PhoD homologs are found in prokaryotes, eukaryotes, and archaea. PhoD contains a twin arginine (RR) motif and is transported by the Tat (Twin-arginine translocation) translocation pathway machinery (TatAyCy). This family also includes the Fusarium oxysporum Fso1 protein. PhoD belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF
Probab=99.21 E-value=3e-10 Score=111.19 Aligned_cols=178 Identities=20% Similarity=0.212 Sum_probs=111.4
Q ss_pred EEEEEccCCCCCChHHHHHHHH----hCCCCEEEEcCccccccccccCCCCCc--ccccCCCCCCccccchHHHHHHH--
Q 009637 200 RIAIVGDLGLTYNTTCTINHMS----SNEPDLVLLVGDVTYANLYLTNGTGSD--CYSCSFSKTPIHETYQPRWDYWG-- 271 (530)
Q Consensus 200 rf~v~gD~g~~~~~~~~~~~l~----~~~pDfvl~~GDl~Yad~~~~~G~~~~--cy~~~~~~~~~~~~y~~~wd~~~-- 271 (530)
||++.+|.+...........+. +.+||++|++||.+|+|.......... --..........+.|..++..+.
T Consensus 1 r~a~~SC~~~~~~~~~~~~~~~~~~~~~~~d~~l~~GD~IY~d~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Y~~~~~~ 80 (228)
T cd07389 1 RFAFGSCNKYESGYFNAYRALAYDHSEEDPDLFLHLGDQIYADDVGGLMPALIEGRPLEPAHEALTLEEYRERYRQYRSD 80 (228)
T ss_pred CEEEEECCCCCCCCcHHHHHHhhhccccCCCEEEEcCCeecccCCCcccccccCCcCcCCcccccCHHHHHHHHHHHcCC
Confidence 5888999887755555555554 789999999999999875211100000 00000001122344555555442
Q ss_pred HHHHHhhhcCCeEEccCCccccccccc----------------cchHHHhhhcCCCCCCCC--CCCcceEEEEcCcE-EE
Q 009637 272 RFMQNLVSKVPIMVVEGNHEIEAQAGN----------------QTFVAYSSRFAFPSEESG--SLSSFYYSFNAGGI-HF 332 (530)
Q Consensus 272 ~~l~~l~~~vP~~~v~GNHD~~~~~~~----------------~~f~~y~~~f~~P~~~~~--~~~~~yYsf~~G~v-~f 332 (530)
..++.+.+.+|++.++.+||+..+.+. .....|......+..... .....|++|.+|.. .|
T Consensus 81 p~~~~~~~~~p~~~iwDDHDi~~n~~~~~~~~~~~~~~~~~~~~a~~ay~e~~~~~~~~~~~~~~~~~y~~~~~G~~~~~ 160 (228)
T cd07389 81 PDLQRLLAQVPTIGIWDDHDIGDNWGGDGAWVQDSPVFYARKAAARQAYLEFQPVRNPSPRRGGRGGIYRSFRFGDLVDL 160 (228)
T ss_pred HHHHHHhhcCCEEEeccccccccccccccccccCcchHHHHHHHHHHHHHHHcCCCCCCccCCCCceEEEEEecCCcceE
Confidence 346777889999999999999876443 122345544444433222 34678999999986 99
Q ss_pred EEEcccccCCCCHHHHHHHHHHHhcccCCCCCEEEEEeCCCCccCCCCCCchhHHHHHHHHHHHHHcC--CcEEEEcccc
Q 009637 333 IMLGAYISYDKSGHQYKWLEKDLANVDRSVTPWLVATWHPPWYSSYSSHYREAECMRVEMEALLYSYG--VDIVFNGHVH 410 (530)
Q Consensus 333 I~Ldt~~~~~~~~~Q~~WL~~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~k~~--VdlvlsGH~H 410 (530)
++||+.... ..+......|+++..++.+.+ --++|||++|
T Consensus 161 ~~lD~R~~R--------------------------------------d~W~~~~~er~~l~~~~~~~~~~~vv~lSGDvH 202 (228)
T cd07389 161 ILLDTRTYR--------------------------------------DSWDGYPAERERLLDLLAKRKIKNVVFLSGDVH 202 (228)
T ss_pred EEEeccccc--------------------------------------ccccccHHHHHHHHHHHHHhCCCCeEEEecHHH
Confidence 999998654 233334456777777765553 3488999999
Q ss_pred Cceee
Q 009637 411 AYERS 415 (530)
Q Consensus 411 ~yeR~ 415 (530)
..+..
T Consensus 203 ~~~~~ 207 (228)
T cd07389 203 LAEAS 207 (228)
T ss_pred HHHHh
Confidence 76654
No 35
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=99.21 E-value=6.1e-10 Score=108.93 Aligned_cols=195 Identities=20% Similarity=0.215 Sum_probs=102.8
Q ss_pred eEEEEEccCCCCCChHHHHHHHHhCCCCEEEEcCccccccccccCCCCCcccccCCCCCCccccchHHHHHHHHHHHHhh
Q 009637 199 KRIAIVGDLGLTYNTTCTINHMSSNEPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQPRWDYWGRFMQNLV 278 (530)
Q Consensus 199 ~rf~v~gD~g~~~~~~~~~~~l~~~~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~~~wd~~~~~l~~l~ 278 (530)
+||+++||+|..... ...+.+.+.+||+|+++||++.. . ..+.+.+..+
T Consensus 1 ~rIa~isDiHg~~~~-~~~~~l~~~~pD~Vl~~GDi~~~-------~----------------------~~~~~~l~~l- 49 (238)
T cd07397 1 LRIAIVGDVHGQWDL-EDIKALHLLQPDLVLFVGDFGNE-------S----------------------VQLVRAISSL- 49 (238)
T ss_pred CEEEEEecCCCCchH-HHHHHHhccCCCEEEECCCCCcC-------h----------------------HHHHHHHHhC-
Confidence 589999999976443 23456667799999999999831 0 1122333333
Q ss_pred hcCCeEEccCCccccccccc-cchHHHhhhcCCCCCCCCCCCcceEE---EEcCcEEEEEEcccc---------------
Q 009637 279 SKVPIMVVEGNHEIEAQAGN-QTFVAYSSRFAFPSEESGSLSSFYYS---FNAGGIHFIMLGAYI--------------- 339 (530)
Q Consensus 279 ~~vP~~~v~GNHD~~~~~~~-~~f~~y~~~f~~P~~~~~~~~~~yYs---f~~G~v~fI~Ldt~~--------------- 339 (530)
..|++++.||||....... .....+......-. ..... .++....+.++.+.-
T Consensus 50 -~~p~~~V~GNHD~~~~~~~~~k~~~l~~~L~~lg-------~~~l~~~~~~~~~~~~~vvG~R~~~~~g~~~~~~~~vr 121 (238)
T cd07397 50 -PLPKAVILGNHDAWYDATFRKKGDRVQEQLELLG-------DLHCGWGRLDFPPLPLSVVGGRPFSAGGGFWLSKKAVK 121 (238)
T ss_pred -CCCeEEEcCCCcccccccccchHHHHHHHHHHhC-------CcEEeecccccCCCCeEEEeeCCccCCCccccCHHHHH
Confidence 4799999999998643211 01223333332111 11111 112221222222210
Q ss_pred -cC--CCCHHHHHHHHHHHhcccCCCCCEEEEEeCCCCccCCCCC-------------CchhHHHHHHHHHHHHHcCCcE
Q 009637 340 -SY--DKSGHQYKWLEKDLANVDRSVTPWLVATWHPPWYSSYSSH-------------YREAECMRVEMEALLYSYGVDI 403 (530)
Q Consensus 340 -~~--~~~~~Q~~WL~~~L~~~~r~~~pwvIv~~H~P~y~s~~~~-------------~~~~~~~r~~l~~ll~k~~Vdl 403 (530)
.| ....+-++.+-+.++.++... + .|++.|.++....+.. ......+++++..+-..-.+++
T Consensus 122 ~~fgi~s~~eA~~~ive~~~~~~~~~-~-~VliaH~~~~G~g~~~~~~cg~d~~~~~~~~G~~~l~~ai~~~~~~~~~~l 199 (238)
T cd07397 122 AVYGVISLEESAQRIIAAAKKAPPDL-P-LILLAHNGPSGLGSDAEDPCGRDWKPPGGDWGDPDLALAISQIQQGRQVPL 199 (238)
T ss_pred HHhCCCCHHHHHHHHHHHhhhcCCCC-C-eEEEeCcCCcCCCcccccccccccCCcCCCCCCHHHHHHHHHHhccCCCCE
Confidence 01 112333444555554433232 2 6888999886653111 1123356666655543345899
Q ss_pred EEEccccCceeeee-cc-cCccCCCCcEEEEeC
Q 009637 404 VFNGHVHAYERSNR-VF-NYTLDPCGPVHITIG 434 (530)
Q Consensus 404 vlsGH~H~yeR~~p-v~-~~~~~~~G~vyIv~G 434 (530)
+++||+|.--|... .. ....+.+|++|+..+
T Consensus 200 ~~fGH~H~~l~~~~~~r~~~~~~~~gt~y~N~a 232 (238)
T cd07397 200 VVFGHMHHRLRRGKGLRNMIAVDREGTVYLNAA 232 (238)
T ss_pred EEeCCccCcccccccccceeeecCCCeEEEecc
Confidence 99999997633221 00 012367899999543
No 36
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=99.19 E-value=1.8e-10 Score=103.59 Aligned_cols=133 Identities=18% Similarity=0.214 Sum_probs=81.1
Q ss_pred EEEEEccCCCCCChHHHHHHHHhCCCCEEEEcCccccccccccCCCCCcccccCCCCCCccccchHHHHHHHHHHHHhhh
Q 009637 200 RIAIVGDLGLTYNTTCTINHMSSNEPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQPRWDYWGRFMQNLVS 279 (530)
Q Consensus 200 rf~v~gD~g~~~~~~~~~~~l~~~~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~~~wd~~~~~l~~l~~ 279 (530)
||+++||+|.... .+...++|+++++||++.. +. ...++.+.+.++.+
T Consensus 1 ~i~~isD~H~~~~------~~~~~~~D~vi~~GD~~~~------~~------------------~~~~~~~~~~l~~~-- 48 (135)
T cd07379 1 RFVCISDTHSRHR------TISIPDGDVLIHAGDLTER------GT------------------LEELQKFLDWLKSL-- 48 (135)
T ss_pred CEEEEeCCCCCCC------cCcCCCCCEEEECCCCCCC------CC------------------HHHHHHHHHHHHhC--
Confidence 5899999997644 2344689999999999842 21 12234444555544
Q ss_pred cCC-eEEccCCccccccccccchHHHhhhcCCCCCCCCCCCcceEEEEcCcEEEEEEcccccCCCCHHHHHHHHHHHhcc
Q 009637 280 KVP-IMVVEGNHEIEAQAGNQTFVAYSSRFAFPSEESGSLSSFYYSFNAGGIHFIMLGAYISYDKSGHQYKWLEKDLANV 358 (530)
Q Consensus 280 ~vP-~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~Ldt~~~~~~~~~Q~~WL~~~L~~~ 358 (530)
..| ++.++||||....
T Consensus 49 ~~~~~~~v~GNHD~~~~--------------------------------------------------------------- 65 (135)
T cd07379 49 PHPHKIVIAGNHDLTLD--------------------------------------------------------------- 65 (135)
T ss_pred CCCeEEEEECCCCCcCC---------------------------------------------------------------
Confidence 233 5789999996310
Q ss_pred cCCCCCEEEEEeCCCCccCCCCCCchhHHHHHHHHHHHHHcCCcEEEEccccCceeeeecccCccCCCCcEEEEe
Q 009637 359 DRSVTPWLVATWHPPWYSSYSSHYREAECMRVEMEALLYSYGVDIVFNGHVHAYERSNRVFNYTLDPCGPVHITI 433 (530)
Q Consensus 359 ~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~k~~VdlvlsGH~H~yeR~~pv~~~~~~~~G~vyIv~ 433 (530)
..+ +.|++.|.|++............-.+.+.+++.+++++++++||+|........ -....++++|..
T Consensus 66 -~~~--~~ilv~H~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~GH~H~~~~~~~~---~~~~~~t~~in~ 134 (135)
T cd07379 66 -PED--TDILVTHGPPYGHLDLVSSGQRVGCEELLNRVQRVRPKLHVFGHIHEGYGAERV---LDTDGETLFVNA 134 (135)
T ss_pred -CCC--CEEEEECCCCCcCccccccCcccCCHHHHHHHHHHCCcEEEEcCcCCcCceeEe---cccCCCEEEEeC
Confidence 112 367888998876532211111112245677788899999999999987422100 001356777654
No 37
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=99.11 E-value=9.6e-10 Score=100.43 Aligned_cols=139 Identities=24% Similarity=0.368 Sum_probs=82.1
Q ss_pred eEEEEEccCCCCCCh-HHHHHHHHhCCCCEEEEcCccccccccccCCCCCcccccCCCCCCccccchHHHHHHHHHHHHh
Q 009637 199 KRIAIVGDLGLTYNT-TCTINHMSSNEPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQPRWDYWGRFMQNL 277 (530)
Q Consensus 199 ~rf~v~gD~g~~~~~-~~~~~~l~~~~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~~~wd~~~~~l~~l 277 (530)
+||+++||+|..... .+.++.+ +++|+|+++||++.. .++.+.++.+
T Consensus 1 Mki~~~sD~H~~~~~~~~~~~~~--~~~d~vi~~GDi~~~------------------------------~~~~~~~~~~ 48 (156)
T PF12850_consen 1 MKIAVISDLHGNLDALEAVLEYI--NEPDFVIILGDIFDP------------------------------EEVLELLRDI 48 (156)
T ss_dssp EEEEEEE--TTTHHHHHHHHHHH--TTESEEEEES-SCSH------------------------------HHHHHHHHHH
T ss_pred CEEEEEeCCCCChhHHHHHHHHh--cCCCEEEECCCchhH------------------------------HHHHHHHhcC
Confidence 699999999986332 3455555 579999999999831 2333344433
Q ss_pred hhcCCeEEccCCccccccccccchHHHhhhcCCCCCCCCCCCcceEEEEcCcEEEEEEcccccCCCCHHHHHHHHHHHhc
Q 009637 278 VSKVPIMVVEGNHEIEAQAGNQTFVAYSSRFAFPSEESGSLSSFYYSFNAGGIHFIMLGAYISYDKSGHQYKWLEKDLAN 357 (530)
Q Consensus 278 ~~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~Ldt~~~~~~~~~Q~~WL~~~L~~ 357 (530)
|++++.||||.. .+....... + +. ..
T Consensus 49 ----~~~~v~GNHD~~---------~~~~~~~~~----------~----------------------------~~---~~ 74 (156)
T PF12850_consen 49 ----PVYVVRGNHDNW---------AFPNENDEE----------Y----------------------------LL---DA 74 (156)
T ss_dssp ----EEEEE--CCHST---------HHHSEECTC----------S----------------------------SH---SE
T ss_pred ----CEEEEeCCcccc---------cchhhhhcc----------c----------------------------cc---cc
Confidence 899999999953 121111000 0 00 00
Q ss_pred ccCCCCCEEEEEeCCCCccCCCCCCchhHHHHHHHHHHHHHcCCcEEEEccccCceeeeecccCccCCCCcEEEEeCCCc
Q 009637 358 VDRSVTPWLVATWHPPWYSSYSSHYREAECMRVEMEALLYSYGVDIVFNGHVHAYERSNRVFNYTLDPCGPVHITIGDGG 437 (530)
Q Consensus 358 ~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~k~~VdlvlsGH~H~yeR~~pv~~~~~~~~G~vyIv~G~gG 437 (530)
.........|++.|...+.... ..+.+..++...+++++++||.|...... .+|+.++..|+-+
T Consensus 75 ~~~~~~~~~i~~~H~~~~~~~~--------~~~~~~~~~~~~~~~~~~~GH~H~~~~~~--------~~~~~~~~~Gs~~ 138 (156)
T PF12850_consen 75 LRLTIDGFKILLSHGHPYDVQW--------DPAELREILSRENVDLVLHGHTHRPQVFK--------IGGIHVINPGSIG 138 (156)
T ss_dssp EEEEETTEEEEEESSTSSSSTT--------THHHHHHHHHHTTSSEEEESSSSSEEEEE--------ETTEEEEEE-GSS
T ss_pred eeeeecCCeEEEECCCCccccc--------ChhhhhhhhcccCCCEEEcCCcccceEEE--------ECCEEEEECCcCC
Confidence 0001123478888876655321 12345677789999999999999987764 3688899988876
Q ss_pred cc
Q 009637 438 NL 439 (530)
Q Consensus 438 ~~ 439 (530)
..
T Consensus 139 ~~ 140 (156)
T PF12850_consen 139 GP 140 (156)
T ss_dssp S-
T ss_pred CC
Confidence 64
No 38
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=99.09 E-value=1e-09 Score=110.71 Aligned_cols=74 Identities=22% Similarity=0.322 Sum_probs=57.0
Q ss_pred CeEEEEEccCCCCCCh---HHHHHHHHhCCCCEEEEcCccccccccccCCCCCcccccCCCCCCccccchHHHHHHHHHH
Q 009637 198 PKRIAIVGDLGLTYNT---TCTINHMSSNEPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQPRWDYWGRFM 274 (530)
Q Consensus 198 ~~rf~v~gD~g~~~~~---~~~~~~l~~~~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~~~wd~~~~~l 274 (530)
++||+.++|+|..... .+.+.++....||+|+++||+++.+ . .+.+..+.+.+
T Consensus 44 ~~~iv~lSDlH~~~~~~~~~~~~~~i~~~~~DlivltGD~~~~~-----~-------------------~~~~~~~~~~L 99 (284)
T COG1408 44 GLKIVQLSDLHSLPFREEKLALLIAIANELPDLIVLTGDYVDGD-----R-------------------PPGVAALALFL 99 (284)
T ss_pred CeEEEEeehhhhchhhHHHHHHHHHHHhcCCCEEEEEeeeecCC-----C-------------------CCCHHHHHHHH
Confidence 6899999999987554 3345555567889999999999621 0 12346677888
Q ss_pred HHhhhcCCeEEccCCcccccc
Q 009637 275 QNLVSKVPIMVVEGNHEIEAQ 295 (530)
Q Consensus 275 ~~l~~~vP~~~v~GNHD~~~~ 295 (530)
+++.+..+++++.||||+...
T Consensus 100 ~~L~~~~gv~av~GNHd~~~~ 120 (284)
T COG1408 100 AKLKAPLGVFAVLGNHDYGVD 120 (284)
T ss_pred HhhhccCCEEEEecccccccc
Confidence 999999999999999999754
No 39
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=99.03 E-value=3.3e-09 Score=104.94 Aligned_cols=198 Identities=17% Similarity=0.213 Sum_probs=104.3
Q ss_pred eEEEEEccCCCCCChH----HHHHHHH--hCCCCEEEEcCccccccccccCCCCCcccccCCCCCCccccchHHHHHHHH
Q 009637 199 KRIAIVGDLGLTYNTT----CTINHMS--SNEPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQPRWDYWGR 272 (530)
Q Consensus 199 ~rf~v~gD~g~~~~~~----~~~~~l~--~~~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~~~wd~~~~ 272 (530)
+|+++++|+|.+.... ..++.+. +.++|+|+++||+++. + .|... ..+......+
T Consensus 1 M~i~~iSDlHl~~~~~~~~~~~~~~l~~~~~~~d~l~i~GDl~d~--~--~g~~~---------------~~~~~~~~~~ 61 (241)
T PRK05340 1 MPTLFISDLHLSPERPAITAAFLRFLRGEARQADALYILGDLFEA--W--IGDDD---------------PSPFAREIAA 61 (241)
T ss_pred CcEEEEeecCCCCCChhHHHHHHHHHHhhhccCCEEEEccceecc--c--cccCc---------------CCHHHHHHHH
Confidence 4899999999875432 2333332 3589999999999942 1 11100 0112234556
Q ss_pred HHHHhhhc-CCeEEccCCccccccccccchHHHhhhcCCCCCCCCCCCcceEEEEcCcEEEEEEcccccCCCCHHHHHHH
Q 009637 273 FMQNLVSK-VPIMVVEGNHEIEAQAGNQTFVAYSSRFAFPSEESGSLSSFYYSFNAGGIHFIMLGAYISYDKSGHQYKWL 351 (530)
Q Consensus 273 ~l~~l~~~-vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~Ldt~~~~~~~~~Q~~WL 351 (530)
.++.+... +|++.++||||.... ..+.+...+. .-.....++.++.+++..-.... ...+..++++
T Consensus 62 ~l~~l~~~g~~v~~v~GNHD~~~~------~~~~~~~g~~------~l~~~~~~~~~g~~i~l~HGd~~-~~~d~~y~~~ 128 (241)
T PRK05340 62 ALKALSDSGVPCYFMHGNRDFLLG------KRFAKAAGMT------LLPDPSVIDLYGQRVLLLHGDTL-CTDDKAYQRF 128 (241)
T ss_pred HHHHHHHcCCeEEEEeCCCchhhh------HHHHHhCCCE------EeCCcEEEEECCEEEEEECCccc-ccCCHHHHHH
Confidence 66666544 899999999997421 1222222110 00123346777777776654321 1233445555
Q ss_pred HHHHhcccCCCCCEEEEEeCCCCccCCC----------------CCCchhHHHHHHHHHHHHHcCCcEEEEccccCceee
Q 009637 352 EKDLANVDRSVTPWLVATWHPPWYSSYS----------------SHYREAECMRVEMEALLYSYGVDIVFNGHVHAYERS 415 (530)
Q Consensus 352 ~~~L~~~~r~~~pwvIv~~H~P~y~s~~----------------~~~~~~~~~r~~l~~ll~k~~VdlvlsGH~H~yeR~ 415 (530)
++.+.+. |....+|.+++.... ....-.....+.+.+++.+++++++++||+|.-...
T Consensus 129 r~~~r~~------~~~~~~~~~p~~~~~~ia~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~GH~H~~~~~ 202 (241)
T PRK05340 129 RRKVRNP------WLQWLFLALPLSIRLRIAAKMRAKSKAANQSKSLEIMDVNPEAVAALMEKHGVDTLIHGHTHRPAIH 202 (241)
T ss_pred HHHHhCH------HHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCcccccCCCHHHHHHHHHHhCCCEEEECcccCccee
Confidence 4444431 122222222221100 000000011246778889999999999999986543
Q ss_pred eecccCccCCCCcEEEEeCCCcc
Q 009637 416 NRVFNYTLDPCGPVHITIGDGGN 438 (530)
Q Consensus 416 ~pv~~~~~~~~G~vyIv~G~gG~ 438 (530)
. +.+ +..+..|++.|+...
T Consensus 203 ~-~~~---~~~~~~~~~lgdw~~ 221 (241)
T PRK05340 203 Q-LQA---GGQPATRIVLGDWHE 221 (241)
T ss_pred e-ccC---CCcceEEEEeCCCCC
Confidence 2 100 111247898898743
No 40
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=98.95 E-value=2.2e-08 Score=92.43 Aligned_cols=37 Identities=24% Similarity=0.363 Sum_probs=27.5
Q ss_pred eEEEEEccCCCCCChHH-HHHHHHhC-CCCEEEEcCccc
Q 009637 199 KRIAIVGDLGLTYNTTC-TINHMSSN-EPDLVLLVGDVT 235 (530)
Q Consensus 199 ~rf~v~gD~g~~~~~~~-~~~~l~~~-~pDfvl~~GDl~ 235 (530)
+|++++||+|......+ .++.+... ++|.|+++||++
T Consensus 1 m~i~viSD~H~~~~~~~~~~~~~~~~~~~d~ii~~GD~~ 39 (158)
T TIGR00040 1 MKILVISDTHGPLRATELPVELFNLESNVDLVIHAGDLT 39 (158)
T ss_pred CEEEEEecccCCcchhHhHHHHHhhccCCCEEEEcCCCC
Confidence 58999999997644323 33444455 899999999997
No 41
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=98.91 E-value=8e-09 Score=98.07 Aligned_cols=110 Identities=17% Similarity=0.341 Sum_probs=70.3
Q ss_pred HhCCCCEEEEcCccccccccccCCCCCcccccCCCCCCccccchHHHHHHHHHHHHh---hhcCCeEEccCCcccccccc
Q 009637 221 SSNEPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQPRWDYWGRFMQNL---VSKVPIMVVEGNHEIEAQAG 297 (530)
Q Consensus 221 ~~~~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~~~wd~~~~~l~~l---~~~vP~~~v~GNHD~~~~~~ 297 (530)
...+||+|+++||+++. |.... ..+|.+..+-+.++ ...+|++.++||||+.....
T Consensus 39 ~~l~PD~Vi~lGDL~D~------G~~~~---------------~~e~~e~l~Rf~~If~~~~~~~~~~VpGNHDIG~~~~ 97 (195)
T cd08166 39 NFVQPDIVIFLGDLMDE------GSIAN---------------DDEYYSYVQRFINIFEVPNGTKIIYLPGDNDIGGEEE 97 (195)
T ss_pred hccCCCEEEEeccccCC------CCCCC---------------HHHHHHHHHHHHHHhcCCCCCcEEEECCCCCcCCCCC
Confidence 44689999999999953 33110 22343333233333 35689999999999974322
Q ss_pred ccchHHHhhhcCCCCCCCCCCCcceEEEEcCcEEEEEEcccccCCCCHHHHHHHHHHHhcccCCCCCEEEEEeCCCCccC
Q 009637 298 NQTFVAYSSRFAFPSEESGSLSSFYYSFNAGGIHFIMLGAYISYDKSGHQYKWLEKDLANVDRSVTPWLVATWHPPWYSS 377 (530)
Q Consensus 298 ~~~f~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~Ldt~~~~~~~~~Q~~WL~~~L~~~~r~~~pwvIv~~H~P~y~s 377 (530)
... ..-..||. .+| |++.|.|....
T Consensus 98 ~~~-~~~v~RF~-----------~~F-------------------------------------------i~lsH~P~~~~ 122 (195)
T cd08166 98 DPI-ESKIRRFE-----------KYF-------------------------------------------IMLSHVPLLAE 122 (195)
T ss_pred CcC-HHHHHHHH-----------Hhh-------------------------------------------eeeeccccccc
Confidence 111 22334441 011 89999998653
Q ss_pred CCCCCchhHHHHHHHHHHHHHcCCcEEEEccccCceeee
Q 009637 378 YSSHYREAECMRVEMEALLYSYGVDIVFNGHVHAYERSN 416 (530)
Q Consensus 378 ~~~~~~~~~~~r~~l~~ll~k~~VdlvlsGH~H~yeR~~ 416 (530)
.. ..+..++.++.++++|+||.|.+.+..
T Consensus 123 ~~----------~~~~~~~~~~~p~~Ifs~H~H~s~~~~ 151 (195)
T cd08166 123 GG----------QALKHVVTDLDPDLIFSAHRHKSSIFM 151 (195)
T ss_pred cc----------HHHHHHHHhcCceEEEEcCccceeeEE
Confidence 21 256778889999999999999987653
No 42
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=98.90 E-value=3.9e-08 Score=105.34 Aligned_cols=179 Identities=18% Similarity=0.289 Sum_probs=107.2
Q ss_pred HHHHHHHhC--CCCEEEEcCccccccccccCCCCCcccccCCCCCCccccchHHHHHHHHHHHHhhhcCCeEEccCCccc
Q 009637 215 CTINHMSSN--EPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQPRWDYWGRFMQNLVSKVPIMVVEGNHEI 292 (530)
Q Consensus 215 ~~~~~l~~~--~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~~~wd~~~~~l~~l~~~vP~~~v~GNHD~ 292 (530)
+++++|.++ ++|+|+++||++-.+.|.. ..+.--.......+.|.+....+|++++.||||.
T Consensus 199 s~L~~ike~~~~iD~I~wTGD~~~H~~w~~----------------t~~~~l~~~~~l~~~~~e~FpdvpvypalGNhe~ 262 (577)
T KOG3770|consen 199 SALDHIKENHKDIDYIIWTGDNVAHDVWAQ----------------TEEENLSMLSRLTSLLSEYFPDVPVYPALGNHEI 262 (577)
T ss_pred HHHHHHHhcCCCCCEEEEeCCCCcccchhh----------------hHHHHHHHHHHHHHHHHHhCCCCceeeecccCCC
Confidence 456677654 4899999999996543210 0010111223344556677789999999999998
Q ss_pred ccccc-------cc-----chHHHhhhc--CCCCCCC-CCCCcceEEEE-cCcEEEEEEcccccC----------CCCHH
Q 009637 293 EAQAG-------NQ-----TFVAYSSRF--AFPSEES-GSLSSFYYSFN-AGGIHFIMLGAYISY----------DKSGH 346 (530)
Q Consensus 293 ~~~~~-------~~-----~f~~y~~~f--~~P~~~~-~~~~~~yYsf~-~G~v~fI~Ldt~~~~----------~~~~~ 346 (530)
..... .. .+..+...+ .+|.+.. ....+.||.-. .+|.++|+||+..-+ .....
T Consensus 263 ~P~N~F~~~~~~~~~~~~wly~~~~~~W~~wlp~e~~~t~~kga~Y~~~~~~Glr~IslNt~~c~~~N~~L~~n~tdp~~ 342 (577)
T KOG3770|consen 263 HPVNLFAPGSVPKRHSQLWLYKHLAGAWSTWLPAEAKETFLKGAYYLVLVIDGLRLISLNTNYCSAPNFWLYANQTDPID 342 (577)
T ss_pred CcHhhcCCCCCcchhhhhHHHHHHHhhhhccCCHHHHhhhhcCcEEEEeecCCceEEEeccccccccceeeeecCCCchH
Confidence 74311 11 112222222 1343221 22345566544 689999999985432 23678
Q ss_pred HHHHHHHHHhcccCCCCCEEEEEeCCCCccCCCCCCchhHHHHHHHHHHHHHcC--CcEEEEccccCceee
Q 009637 347 QYKWLEKDLANVDRSVTPWLVATWHPPWYSSYSSHYREAECMRVEMEALLYSYG--VDIVFNGHVHAYERS 415 (530)
Q Consensus 347 Q~~WL~~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~k~~--VdlvlsGH~H~yeR~ 415 (530)
|++|+..+|.++..++.. |-+++|.|.-.. ... +.....+-.++.++. +...|.||.|.-+-.
T Consensus 343 ~lqWf~~~L~~ae~~Gek-Vhil~HIPpG~~---~c~--~~ws~~f~~iv~r~~~tI~gqf~GH~h~d~f~ 407 (577)
T KOG3770|consen 343 QLQWFVDQLQEAESAGEK-VHILGHIPPGDG---VCL--EGWSINFYRIVNRFRSTIAGQFYGHTHIDEFR 407 (577)
T ss_pred HhhHHHHHHHHHHhcCCE-EEEEEeeCCCCc---chh--hhhhHHHHHHHHHHHHhhhhhccccCcceeEE
Confidence 899999999987644443 778899997431 111 112234455566663 556799999986644
No 43
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=98.89 E-value=1.1e-08 Score=94.44 Aligned_cols=52 Identities=31% Similarity=0.560 Sum_probs=33.6
Q ss_pred HhCCCCEEEEcCccccccccccCCCCCcccccCCCCCCccccchHHHHHHHHHHHHh-h--hcCCeEEccCCcccc
Q 009637 221 SSNEPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQPRWDYWGRFMQNL-V--SKVPIMVVEGNHEIE 293 (530)
Q Consensus 221 ~~~~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~~~wd~~~~~l~~l-~--~~vP~~~v~GNHD~~ 293 (530)
.+.+||+|+++||++.. +... . ...|..+...+..+ . ..+|++.++||||..
T Consensus 35 ~~~~pd~vv~~GDl~~~------~~~~--------------~-~~~~~~~~~~~~~~~~~~~~~~i~~v~GNHD~~ 89 (156)
T cd08165 35 WLLQPDVVFVLGDLFDE------GKWS--------------T-DEEWEDYVERFKKMFGHPPDLPLHVVVGNHDIG 89 (156)
T ss_pred HhcCCCEEEECCCCCCC------CccC--------------C-HHHHHHHHHHHHHHhccCCCCeEEEEcCCCCcC
Confidence 35699999999999953 1100 0 13454443333333 2 258999999999984
No 44
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=98.85 E-value=3e-07 Score=86.75 Aligned_cols=40 Identities=30% Similarity=0.478 Sum_probs=30.0
Q ss_pred HHHHHHHHcCCcEEEEccccCceeeeecccCccCCCCcEEEEeCCCcc
Q 009637 391 EMEALLYSYGVDIVFNGHVHAYERSNRVFNYTLDPCGPVHITIGDGGN 438 (530)
Q Consensus 391 ~l~~ll~k~~VdlvlsGH~H~yeR~~pv~~~~~~~~G~vyIv~G~gG~ 438 (530)
.+..++.+.++|++++||+|...... .+|.++|..|+.|.
T Consensus 97 ~~~~~~~~~~~dvii~GHTH~p~~~~--------~~g~~viNPGSv~~ 136 (178)
T cd07394 97 SLAALQRQLDVDILISGHTHKFEAFE--------HEGKFFINPGSATG 136 (178)
T ss_pred HHHHHHHhcCCCEEEECCCCcceEEE--------ECCEEEEECCCCCC
Confidence 34455667889999999999765432 26889999998774
No 45
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.85 E-value=2e-08 Score=89.78 Aligned_cols=49 Identities=12% Similarity=0.017 Sum_probs=31.8
Q ss_pred EEEEeCCCCccCCCCCCchhHHHHHHHHHHHHHcCCcEEEEccccCceee
Q 009637 366 LVATWHPPWYSSYSSHYREAECMRVEMEALLYSYGVDIVFNGHVHAYERS 415 (530)
Q Consensus 366 vIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~k~~VdlvlsGH~H~yeR~ 415 (530)
.|++.|+|++...... .....-.+.+.+++.+++++++|+||+|.....
T Consensus 58 ~Ilv~H~pp~~~~~~~-~~~~~g~~~l~~~l~~~~~~~vl~GH~H~~~~~ 106 (129)
T cd07403 58 DILLTHAPPAGIGDGE-DFAHRGFEAFLDFIDRFRPKLFIHGHTHLNYGY 106 (129)
T ss_pred CEEEECCCCCcCcCcc-cccccCHHHHHHHHHHHCCcEEEEcCcCCCcCc
Confidence 4677777766433211 001112456778888999999999999976554
No 46
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=98.85 E-value=3.3e-08 Score=92.67 Aligned_cols=49 Identities=20% Similarity=0.197 Sum_probs=33.5
Q ss_pred EEEeCCCCccCCCCCCchhHHHHHHHHHHHHHcCCcEEEEccccCceeeeecccCccCCCCcEEEEeCCCc
Q 009637 367 VATWHPPWYSSYSSHYREAECMRVEMEALLYSYGVDIVFNGHVHAYERSNRVFNYTLDPCGPVHITIGDGG 437 (530)
Q Consensus 367 Iv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~k~~VdlvlsGH~H~yeR~~pv~~~~~~~~G~vyIv~G~gG 437 (530)
|++.|.|.+. ++.+.+++++|+||+|.+-+...-+ ....+.-|++.+..
T Consensus 119 i~l~H~p~~~------------------~~~~~~~~~~lsGH~H~~~~~~~~~----~~~~~~ei~v~S~s 167 (171)
T cd07384 119 ILLTHIPLYR------------------LLDTIKPVLILSGHDHDQCEVVHSS----KAGSVREITVKSFS 167 (171)
T ss_pred eeEECCccHH------------------HHhccCceEEEeCcccCCeEEEecC----CCCCceEEeeccch
Confidence 8999999631 6677899999999999986664311 12345556655543
No 47
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=98.83 E-value=1.6e-08 Score=92.78 Aligned_cols=57 Identities=19% Similarity=0.131 Sum_probs=38.9
Q ss_pred EEEEeCCCCccCCCCCCchhHHHHHHHHHHHHHcCCcEEEEccccCceeeeecccCccCCCCcEEEEeCCCccc
Q 009637 366 LVATWHPPWYSSYSSHYREAECMRVEMEALLYSYGVDIVFNGHVHAYERSNRVFNYTLDPCGPVHITIGDGGNL 439 (530)
Q Consensus 366 vIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~k~~VdlvlsGH~H~yeR~~pv~~~~~~~~G~vyIv~G~gG~~ 439 (530)
.|++.|.+....... . + . ..++.+.++|++++||+|...... .+|+++|..|+.|..
T Consensus 77 ~i~v~Hg~~~~~~~~----~---~-~-~~~~~~~~~d~vi~GHtH~~~~~~--------~~~~~~inpGs~~~~ 133 (155)
T cd00841 77 RIFLTHGHLYGVKNG----L---D-R-LYLAKEGGADVVLYGHTHIPVIEK--------IGGVLLLNPGSLSLP 133 (155)
T ss_pred EEEEECCcccccccc----h---h-h-hhhhhhcCCCEEEECcccCCccEE--------ECCEEEEeCCCccCc
Confidence 677788776543211 0 1 1 455677899999999999865432 268899999987763
No 48
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=98.80 E-value=1.9e-07 Score=91.89 Aligned_cols=185 Identities=15% Similarity=0.184 Sum_probs=96.8
Q ss_pred EEEccCCCCCCh----HHHHHHHHh--CCCCEEEEcCccccccccccCCCCCcccccCCCCCCccccchHHHHHHHHHHH
Q 009637 202 AIVGDLGLTYNT----TCTINHMSS--NEPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQPRWDYWGRFMQ 275 (530)
Q Consensus 202 ~v~gD~g~~~~~----~~~~~~l~~--~~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~~~wd~~~~~l~ 275 (530)
++++|+|.+... ...++.+.+ .+||+|+++||+++ .+. |.. . . ......+.+.++
T Consensus 2 ~~iSDlHl~~~~~~~~~~~l~~l~~~~~~~d~lii~GDi~d--~~~--~~~-----------~-~---~~~~~~~~~~l~ 62 (231)
T TIGR01854 2 LFISDLHLSPERPDITALFLDFLREEARKADALYILGDLFE--AWI--GDD-----------D-P---STLARSVAQAIR 62 (231)
T ss_pred eEEEecCCCCCChhHHHHHHHHHHhhhccCCEEEEcCceec--ccc--CCC-----------C-C---CHHHHHHHHHHH
Confidence 689999987532 234555544 37999999999994 221 110 0 0 111234555666
Q ss_pred Hhhh-cCCeEEccCCccccccccccchHHHhhhcCCCCCCCCCCCcceEEEEcCcEEEEEEcccccC--CC---------
Q 009637 276 NLVS-KVPIMVVEGNHEIEAQAGNQTFVAYSSRFAFPSEESGSLSSFYYSFNAGGIHFIMLGAYISY--DK--------- 343 (530)
Q Consensus 276 ~l~~-~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~Ldt~~~~--~~--------- 343 (530)
.+.. .+|+++++||||.... ..+.....+.- -.....+..++.+++++-..... +.
T Consensus 63 ~L~~~~~~v~~v~GNHD~~~~------~~~~~~~gi~~------l~~~~~~~~~g~~ill~HGd~~~~~d~~y~~~r~~~ 130 (231)
T TIGR01854 63 QVSDQGVPCYFMHGNRDFLIG------KRFAREAGMTL------LPDPSVIDLYGQKVLLMHGDTLCTDDTAYQAFRAKV 130 (231)
T ss_pred HHHHCCCeEEEEcCCCchhhh------HHHHHHCCCEE------ECCCEEEEECCEEEEEEcCccccCCCHHHHHHHHHH
Confidence 6654 5899999999997421 11222111100 00112355566555555332110 00
Q ss_pred ------------CHHHHHHHHHHHhcccCCC---CCEEEEEeCCCCccCCCCCCchhHHHHHHHHHHHHHcCCcEEEEcc
Q 009637 344 ------------SGHQYKWLEKDLANVDRSV---TPWLVATWHPPWYSSYSSHYREAECMRVEMEALLYSYGVDIVFNGH 408 (530)
Q Consensus 344 ------------~~~Q~~WL~~~L~~~~r~~---~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~k~~VdlvlsGH 408 (530)
......||.+.+.+..+++ .+ ..++.+ ..+.+++++.++++|++++||
T Consensus 131 r~~~~~~~~~~l~~~~r~~l~~~~~~~s~~~~~~~~-~~~~~~----------------~~~~~~~~~~~~~~~~~i~GH 193 (231)
T TIGR01854 131 HQPWLQRLFLHLPLAVRVKLARKIRAESRADKQMKS-QDIMDV----------------NPAEVAAVMRRYGVDRLIHGH 193 (231)
T ss_pred hCHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCc-chhhCC----------------CHHHHHHHHHHcCCCEEEECC
Confidence 1112344444443321111 00 011111 123567788889999999999
Q ss_pred ccCceeeeecccCccCCCCcEEEEeCCCcc
Q 009637 409 VHAYERSNRVFNYTLDPCGPVHITIGDGGN 438 (530)
Q Consensus 409 ~H~yeR~~pv~~~~~~~~G~vyIv~G~gG~ 438 (530)
+|.-... +..+ +..+..|++.|+.-.
T Consensus 194 tH~~~~~-~~~~---~~~~~~~~~lgdW~~ 219 (231)
T TIGR01854 194 THRPAIH-PLQA---DGQPATRIVLGDWYR 219 (231)
T ss_pred ccCccee-eccc---CCCccEEEEECCCcc
Confidence 9987643 3211 223568999998743
No 49
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=98.80 E-value=1.2e-07 Score=90.66 Aligned_cols=191 Identities=18% Similarity=0.252 Sum_probs=113.7
Q ss_pred CeEEEEEccCCCCCC-hHHHHHHHHhCCCCEEEEcCccccccccccCCCCCcccccCCCCCCccccchHHHHHHHHHHHH
Q 009637 198 PKRIAIVGDLGLTYN-TTCTINHMSSNEPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQPRWDYWGRFMQN 276 (530)
Q Consensus 198 ~~rf~v~gD~g~~~~-~~~~~~~l~~~~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~~~wd~~~~~l~~ 276 (530)
.+|+++++|+|.... ..+.++.+...++|+++.+||++|.+ .|... | .-+.. + ++.
T Consensus 3 ~mkil~vtDlHg~~~~~~k~~~~~~~~~~D~lviaGDlt~~~----~~~~~-~------------~~~~~---~---~e~ 59 (226)
T COG2129 3 KMKILAVTDLHGSEDSLKKLLNAAADIRADLLVIAGDLTYFH----FGPKE-V------------AEELN---K---LEA 59 (226)
T ss_pred cceEEEEeccccchHHHHHHHHHHhhccCCEEEEecceehhh----cCchH-H------------HHhhh---H---HHH
Confidence 589999999998643 34455555667999999999999543 22210 0 00000 1 344
Q ss_pred hh-hcCCeEEccCCccccccccccchHHHhhhcCCCCCCCCCCCcceEEEEcCcEEEEEEccc------ccCCCCHHH-H
Q 009637 277 LV-SKVPIMVVEGNHEIEAQAGNQTFVAYSSRFAFPSEESGSLSSFYYSFNAGGIHFIMLGAY------ISYDKSGHQ-Y 348 (530)
Q Consensus 277 l~-~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~Ldt~------~~~~~~~~Q-~ 348 (530)
+. ..+|+++++||-|-.. -.. ........ ..+ -+.+.+++.|+.+... +.+...+++ +
T Consensus 60 l~~~~~~v~avpGNcD~~~-----v~~-~l~~~~~~------v~~--~v~~i~~~~~~G~Ggsn~tp~nt~~e~~E~~I~ 125 (226)
T COG2129 60 LKELGIPVLAVPGNCDPPE-----VID-VLKNAGVN------VHG--RVVEIGGYGFVGFGGSNPTPFNTPREFSEDEIY 125 (226)
T ss_pred HHhcCCeEEEEcCCCChHH-----HHH-HHHhcccc------ccc--ceEEecCcEEEEecccCCCCCCCccccCHHHHH
Confidence 43 6899999999987631 111 11111111 011 5577888888886431 111223333 3
Q ss_pred HHHHHHHhcccCCCCCEEEEEeCCCCccCCCCCCch-hHHHHHHHHHHHHHcCCcEEEEccccCceeeeecccCccCCCC
Q 009637 349 KWLEKDLANVDRSVTPWLVATWHPPWYSSYSSHYRE-AECMRVEMEALLYSYGVDIVFNGHVHAYERSNRVFNYTLDPCG 427 (530)
Q Consensus 349 ~WL~~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~-~~~~r~~l~~ll~k~~VdlvlsGH~H~yeR~~pv~~~~~~~~G 427 (530)
.-|++-+++.+... .|+.+|.|+|......... ...-.+.+.+++++.++-+.+|||+|.+.-.-. -+.
T Consensus 126 s~l~~~v~~~~~~~---~Il~~HaPP~gt~~d~~~g~~hvGS~~vr~~ieefqP~l~i~GHIHEs~G~d~-------iG~ 195 (226)
T COG2129 126 SKLKSLVKKADNPV---NILLTHAPPYGTLLDTPSGYVHVGSKAVRKLIEEFQPLLGLHGHIHESRGIDK-------IGN 195 (226)
T ss_pred HHHHHHHhcccCcc---eEEEecCCCCCccccCCCCccccchHHHHHHHHHhCCceEEEeeecccccccc-------cCC
Confidence 44555555543211 3999999999875442222 122356788899999999999999998544422 145
Q ss_pred cEEEEeCC
Q 009637 428 PVHITIGD 435 (530)
Q Consensus 428 ~vyIv~G~ 435 (530)
++.|..|.
T Consensus 196 TivVNPG~ 203 (226)
T COG2129 196 TIVVNPGP 203 (226)
T ss_pred eEEECCCC
Confidence 66666665
No 50
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=98.79 E-value=1e-07 Score=90.84 Aligned_cols=193 Identities=22% Similarity=0.333 Sum_probs=88.8
Q ss_pred CeEEEEEccCCCCCCh-HHHHHHHHhCCCCEEEEcCccccccccccCCCCCcccc-----cCCCCC-Ccc--ccchHH-H
Q 009637 198 PKRIAIVGDLGLTYNT-TCTINHMSSNEPDLVLLVGDVTYANLYLTNGTGSDCYS-----CSFSKT-PIH--ETYQPR-W 267 (530)
Q Consensus 198 ~~rf~v~gD~g~~~~~-~~~~~~l~~~~pDfvl~~GDl~Yad~~~~~G~~~~cy~-----~~~~~~-~~~--~~y~~~-w 267 (530)
+-|++.++|.+..... .+.+..+.+.+||+|+++||+.-+.. . .+.|. .-.|+. .+. +.|+.. .
T Consensus 5 ~~kilA~s~~~g~~e~l~~l~~~~~e~~~D~~v~~G~~~~~~a-----~-~~e~~~a~~~~r~p~k~~i~~e~~~~~e~~ 78 (255)
T PF14582_consen 5 VRKILAISNFRGDFELLERLVEVIPEKGPDAVVFVGDLLKAEA-----R-SDEYERAQEEQREPDKSEINEEECYDSEAL 78 (255)
T ss_dssp --EEEEEE--TT-HHHHHHHHHHHHHHT-SEEEEES-SS-TCH-----H-HHHHHHHHHTT----THHHHHHHHHHHHHH
T ss_pred chhheeecCcchHHHHHHHHHhhccccCCCEEEEeccccccch-----h-hhHHHHHhhhccCcchhhhhhhhhhhHHHH
Confidence 4589999998764322 33444455679999999999984311 0 00000 000000 000 011111 2
Q ss_pred HHHHHHHHHhhhcCCeEEccCCccccccccccch--HHHhhhcCCCCCCCCCCCcceEEEEcCcEEEEEEcccccC-CC-
Q 009637 268 DYWGRFMQNLVSKVPIMVVEGNHEIEAQAGNQTF--VAYSSRFAFPSEESGSLSSFYYSFNAGGIHFIMLGAYISY-DK- 343 (530)
Q Consensus 268 d~~~~~l~~l~~~vP~~~v~GNHD~~~~~~~~~f--~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~Ldt~~~~-~~- 343 (530)
+.+++.+.. ..+|.+++|||||... ..| .+|......|.-- .-..-+.+.-|.+-|+.+..+..- ..
T Consensus 79 ~~ff~~L~~--~~~p~~~vPG~~Dap~----~~~lr~a~~~e~v~p~~~---~vH~sf~~~~g~y~v~G~GGeI~~~~~~ 149 (255)
T PF14582_consen 79 DKFFRILGE--LGVPVFVVPGNMDAPE----RFFLREAYNAEIVTPHIH---NVHESFFFWKGEYLVAGMGGEITDDQRE 149 (255)
T ss_dssp HHHHHHHHC--C-SEEEEE--TTS-SH----HHHHHHHHHCCCC-TTEE---E-CTCEEEETTTEEEEEE-SEEESSS-B
T ss_pred HHHHHHHHh--cCCcEEEecCCCCchH----HHHHHHHhccceecccee---eeeeeecccCCcEEEEecCccccCCCcc
Confidence 244455544 4899999999999742 111 1222222222100 001112334455888888764321 11
Q ss_pred -------CHHHHHHHHHHHhcccCCCCCEEEEEeCCCC-ccCCCCCCchhHHHHHHHHHHHHHcCCcEEEEccccCce
Q 009637 344 -------SGHQYKWLEKDLANVDRSVTPWLVATWHPPW-YSSYSSHYREAECMRVEMEALLYSYGVDIVFNGHVHAYE 413 (530)
Q Consensus 344 -------~~~Q~~WL~~~L~~~~r~~~pwvIv~~H~P~-y~s~~~~~~~~~~~r~~l~~ll~k~~VdlvlsGH~H~ye 413 (530)
.....+|..+.|..++ ..=+|+++|.|+ +.....+.+ .+.+.+++++|+.++|||||+|.-.
T Consensus 150 ~~~~LrYP~weaey~lk~l~elk---~~r~IlLfhtpPd~~kg~~h~G-----S~~V~dlIk~~~P~ivl~Ghihe~~ 219 (255)
T PF14582_consen 150 EEFKLRYPAWEAEYSLKFLRELK---DYRKILLFHTPPDLHKGLIHVG-----SAAVRDLIKTYNPDIVLCGHIHESH 219 (255)
T ss_dssp CSSS-EEEHHHHHHHHGGGGGCT---SSEEEEEESS-BTBCTCTBTTS-----BHHHHHHHHHH--SEEEE-SSS-EE
T ss_pred ccccccchHHHHHHHHHHHHhcc---cccEEEEEecCCccCCCccccc-----HHHHHHHHHhcCCcEEEecccccch
Confidence 1223455556666653 223788899998 443322222 2578889999999999999999754
No 51
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=98.71 E-value=2.7e-07 Score=84.54 Aligned_cols=64 Identities=19% Similarity=0.199 Sum_probs=44.5
Q ss_pred CCCCEEEEEeCCCCccCCCCCCchhHHHHHHHHHHHHHcCCcEEEEccccCceeeeecccCccCCCCcEEEEeCC
Q 009637 361 SVTPWLVATWHPPWYSSYSSHYREAECMRVEMEALLYSYGVDIVFNGHVHAYERSNRVFNYTLDPCGPVHITIGD 435 (530)
Q Consensus 361 ~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~k~~VdlvlsGH~H~yeR~~pv~~~~~~~~G~vyIv~G~ 435 (530)
+...-+|||.|.|++++.... ..+.+++++++|+.++.||.|.-.|-.+-.. +-.|+-|+.+.+
T Consensus 156 k~~~~fivM~HYPP~s~~~t~--------~~~sevlee~rv~~~lyGHlHgv~~p~~~~s---~v~Gi~y~Lvaa 219 (230)
T COG1768 156 KGVSKFIVMTHYPPFSDDGTP--------GPFSEVLEEGRVSKCLYGHLHGVPRPNIGFS---NVRGIEYMLVAA 219 (230)
T ss_pred cCcCeEEEEEecCCCCCCCCC--------cchHHHHhhcceeeEEeeeccCCCCCCCCcc---cccCceEEEEec
Confidence 334458999999998764321 2466788899999999999999887543222 224777765543
No 52
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=98.68 E-value=1.1e-07 Score=91.96 Aligned_cols=197 Identities=17% Similarity=0.193 Sum_probs=99.6
Q ss_pred EEEccCCCCCCh---HHHHHHHHh----CCCCEEEEcCccccccccccCCCCCcccccCCCCCCccccchHHHHHHHHHH
Q 009637 202 AIVGDLGLTYNT---TCTINHMSS----NEPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQPRWDYWGRFM 274 (530)
Q Consensus 202 ~v~gD~g~~~~~---~~~~~~l~~----~~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~~~wd~~~~~l 274 (530)
++++|+|.+... ......+.+ .++|.++++||++.. +. +... ... ......+...+
T Consensus 1 ~~iSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~lvl~GDi~d~--~~--~~~~----------~~~---~~~~~~~~~l~ 63 (217)
T cd07398 1 LFISDLHLGDGGPAADFLLLFLLAALALGEADALYLLGDIFDL--WF--GDDE----------VVP---PAAHEVLAALL 63 (217)
T ss_pred CEeeeecCCCCCCCHHHHHHHHHhhhccCCCCEEEEeccEEEE--Ee--cCCC----------CCC---hHHHHHHHHHH
Confidence 478999987543 222333332 489999999999942 21 1100 000 01111124445
Q ss_pred HHhhhcCCeEEccCCccccccccccchHHHhhhcCCCCCCCCCCCcceEEEEcCcEEEEEEcccccCCCCHHHHHHHHHH
Q 009637 275 QNLVSKVPIMVVEGNHEIEAQAGNQTFVAYSSRFAFPSEESGSLSSFYYSFNAGGIHFIMLGAYISYDKSGHQYKWLEKD 354 (530)
Q Consensus 275 ~~l~~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~Ldt~~~~~~~~~Q~~WL~~~ 354 (530)
+.+....+++.++||||.... ..+..+..... .......+.+++.+++++-... ++.....+.|+...
T Consensus 64 ~~~~~~~~v~~v~GNHD~~~~------~~~~~~~~~~~-----~~~~~~~~~~~g~~~~~~HG~~-~d~~~~~~~~~~~~ 131 (217)
T cd07398 64 RLADRGTRVYYVPGNHDFLLG------DFFAEELGLIL-----LPDPLVHLELDGKRILLEHGDQ-FDTDDRAYQLLRRL 131 (217)
T ss_pred HHHHCCCeEEEECCCchHHHH------hHHHHHcCCEE-----eccceEEEeeCCeEEEEECCCc-CchhHHHHHHHHHH
Confidence 555678999999999998521 11111111100 0111215677888888876542 23344455555543
Q ss_pred HhcccC------CCCCEEEEEeCCCCccC----C--CCCCchhHHHHHHHHHHHHHcCCcEEEEccccCceeeeecccCc
Q 009637 355 LANVDR------SVTPWLVATWHPPWYSS----Y--SSHYREAECMRVEMEALLYSYGVDIVFNGHVHAYERSNRVFNYT 422 (530)
Q Consensus 355 L~~~~r------~~~pwvIv~~H~P~y~s----~--~~~~~~~~~~r~~l~~ll~k~~VdlvlsGH~H~yeR~~pv~~~~ 422 (530)
+..... .-..|..-........+ . .......+...+.+..++.+++++++++||+|......
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~GH~H~~~~~~------ 205 (217)
T cd07398 132 GRNPYDQLLFLNRPLNRRRGIAGGLRWSSRYLKKKVKKAVAIIDVFEEAVARLARRKGVDGVICGHTHRPALHE------ 205 (217)
T ss_pred hCcHHHHHHHhcchHHHHHHHHHhhhhhhHHHHhCccchHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCCeEE------
Confidence 321100 00000000000000000 0 00011122345567777889999999999999876543
Q ss_pred cCCCCcEEEEeCC
Q 009637 423 LDPCGPVHITIGD 435 (530)
Q Consensus 423 ~~~~G~vyIv~G~ 435 (530)
..+..|+++|+
T Consensus 206 --~~~~~~~n~G~ 216 (217)
T cd07398 206 --LDGKLYINLGD 216 (217)
T ss_pred --ECCEEEEECCC
Confidence 24788888886
No 53
>PRK09453 phosphodiesterase; Provisional
Probab=98.68 E-value=3.9e-07 Score=86.19 Aligned_cols=75 Identities=20% Similarity=0.360 Sum_probs=46.3
Q ss_pred eEEEEEccCCCCCCh-HHHHHHHHhCCCCEEEEcCccccccccccCCCCCcccccCCCCCCccccchHHHHHHHHHHHHh
Q 009637 199 KRIAIVGDLGLTYNT-TCTINHMSSNEPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQPRWDYWGRFMQNL 277 (530)
Q Consensus 199 ~rf~v~gD~g~~~~~-~~~~~~l~~~~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~~~wd~~~~~l~~l 277 (530)
+|++++||+|..... .++++.+.+.++|.|+++||++.. |. ..+..+.|+ .+...+.++.+
T Consensus 1 mri~viSD~Hg~~~~~~~~l~~~~~~~~d~ii~lGDi~~~------~~----------~~~~~~~~~--~~~~~~~l~~~ 62 (182)
T PRK09453 1 MKLMFASDTHGSLPATEKALELFAQSGADWLVHLGDVLYH------GP----------RNPLPEGYA--PKKVAELLNAY 62 (182)
T ss_pred CeEEEEEeccCCHHHHHHHHHHHHhcCCCEEEEccccccc------Cc----------CCCCccccC--HHHHHHHHHhc
Confidence 589999999965322 334555556799999999999842 11 001111121 12333334332
Q ss_pred hhcCCeEEccCCcccc
Q 009637 278 VSKVPIMVVEGNHEIE 293 (530)
Q Consensus 278 ~~~vP~~~v~GNHD~~ 293 (530)
..+++.+.||||..
T Consensus 63 --~~~v~~V~GNhD~~ 76 (182)
T PRK09453 63 --ADKIIAVRGNCDSE 76 (182)
T ss_pred --CCceEEEccCCcch
Confidence 46899999999963
No 54
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=98.66 E-value=3.3e-07 Score=91.05 Aligned_cols=191 Identities=16% Similarity=0.133 Sum_probs=98.3
Q ss_pred eEEEEEccCCCCC-------Ch---HHHHHHHHhCCCC-EEEEcCccccccccccCCCCCcccccCCCCCCccccchHHH
Q 009637 199 KRIAIVGDLGLTY-------NT---TCTINHMSSNEPD-LVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQPRW 267 (530)
Q Consensus 199 ~rf~v~gD~g~~~-------~~---~~~~~~l~~~~pD-fvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~~~w 267 (530)
++|++++|+|... .. ...++++.+.+|| +++.+||++....... + ...
T Consensus 1 l~i~~~sD~hg~~~~~~~~~g~~~l~~~v~~~~~~~~~~l~v~~GD~~~~~~~~~--------------------~-~~~ 59 (252)
T cd00845 1 LTILHTNDLHGHFEPAGGVGGAARLATLIKEERAENENTLLLDAGDNFDGSPPST--------------------A-TKG 59 (252)
T ss_pred CEEEEecccccCccccCCcCCHHHHHHHHHHHHhcCCCeEEEeCCccCCCccchh--------------------c-cCC
Confidence 4899999999553 11 3456677777788 7899999985321100 0 001
Q ss_pred HHHHHHHHHhhhcCCeEEccCCccccccccccchHHHhhhcCCCC---C----C---CCCCCcceEEEEcCcEEE--EEE
Q 009637 268 DYWGRFMQNLVSKVPIMVVEGNHEIEAQAGNQTFVAYSSRFAFPS---E----E---SGSLSSFYYSFNAGGIHF--IML 335 (530)
Q Consensus 268 d~~~~~l~~l~~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~---~----~---~~~~~~~yYsf~~G~v~f--I~L 335 (530)
....+.++.+ -.-++++||||+... ...+.........|. + . .......|.-++.+++++ +.+
T Consensus 60 ~~~~~~l~~~---g~d~~~~GNHe~d~g--~~~l~~~~~~~~~~~l~aNv~~~~~~~~~~~~~~~~i~~~~g~kIgiiG~ 134 (252)
T cd00845 60 EANIELMNAL---GYDAVTIGNHEFDYG--LDALAELYKDANFPVLSANLYDKDTGTGPPWAKPYKIIEVDGVKIGVIGL 134 (252)
T ss_pred cHHHHHHHhc---CCCEEeecccccccc--HHHHHHHHHhCCCCEEEEeeeccCCCCCCCCcCCeEEEEECCEEEEEEEe
Confidence 1222333332 345677899998532 223343433333321 0 0 001123355677787554 444
Q ss_pred cccccCC----------CCHHHHHHHHHHHhcccCCCCCEEEEEeCCCCccCCCCCCchhHHHHHHHHHHHHHcCCcEEE
Q 009637 336 GAYISYD----------KSGHQYKWLEKDLANVDRSVTPWLVATWHPPWYSSYSSHYREAECMRVEMEALLYSYGVDIVF 405 (530)
Q Consensus 336 dt~~~~~----------~~~~Q~~WL~~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~k~~Vdlvl 405 (530)
.+..... ......+.+++..++. +.+...+|++.|.+.... ..+.+.+ .+||++|
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vIvl~H~g~~~~------------~~la~~~--~giDlvl 199 (252)
T cd00845 135 TTPDTPTYTPLGWIIGLPFEDLAEAVAVAEELL-AEGADVIILLSHLGLDDD------------EELAEEV--PGIDVIL 199 (252)
T ss_pred ccccceeecCCCcccCceecCHHHHHHHHHHHH-hCCCCEEEEEeccCccch------------HHHHhcC--CCccEEE
Confidence 4321100 0112233343322222 245667999999876420 1111111 5899999
Q ss_pred EccccCceeeeecccCccCCCCcEEEEeCCC
Q 009637 406 NGHVHAYERSNRVFNYTLDPCGPVHITIGDG 436 (530)
Q Consensus 406 sGH~H~yeR~~pv~~~~~~~~G~vyIv~G~g 436 (530)
+||.|....... .-++++.+-+|.=
T Consensus 200 ggH~H~~~~~~~------~~~~~~v~~~g~~ 224 (252)
T cd00845 200 GGHTHHLLEEPE------VVNGTLIVQAGKY 224 (252)
T ss_pred cCCcCcccCCCc------ccCCEEEEeCChh
Confidence 999998654311 1245666655543
No 55
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=98.60 E-value=1.4e-06 Score=88.09 Aligned_cols=206 Identities=17% Similarity=0.151 Sum_probs=102.6
Q ss_pred eEEEEEccCCCCCC-----------------hHHHHHHHHhCCCCEEEE-cCccccccccccCCCCCcccccCCCCCCcc
Q 009637 199 KRIAIVGDLGLTYN-----------------TTCTINHMSSNEPDLVLL-VGDVTYANLYLTNGTGSDCYSCSFSKTPIH 260 (530)
Q Consensus 199 ~rf~v~gD~g~~~~-----------------~~~~~~~l~~~~pDfvl~-~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~ 260 (530)
++|++++|+|.... ....++++.+.+|+.+++ +||+....... .+....
T Consensus 1 l~il~t~D~Hg~~~~~~~~~~~~~~~gg~~~l~~~i~~~r~~~~~~l~ld~GD~~~gs~~~-------~~~~~~------ 67 (277)
T cd07410 1 LRILATSDLHGNLLPYDYYTDKPDASGGLARVATLIKKARAENPNTLLIDNGDTIQGSPLA-------DYYAKI------ 67 (277)
T ss_pred CeEEEEeccccceeCccccCCCcCCccCHHHHHHHHHHHHhcCCCeEEEeCCccCCccHHH-------HHhhhc------
Confidence 47888888885421 133466666667887776 99998532110 000000
Q ss_pred ccchHHHHHHHHHHHHhhhcCCeEEccCCccccccccccchHHHhhhcCCCCC-------C-CCCCCcceEEEEcC-cEE
Q 009637 261 ETYQPRWDYWGRFMQNLVSKVPIMVVEGNHEIEAQAGNQTFVAYSSRFAFPSE-------E-SGSLSSFYYSFNAG-GIH 331 (530)
Q Consensus 261 ~~y~~~wd~~~~~l~~l~~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~-------~-~~~~~~~yYsf~~G-~v~ 331 (530)
+ ........+.|+.+ .. -+.++||||+.. +...+........+|-- . .......|.-++.+ +++
T Consensus 68 ~--~~~~~~~~~~ln~~--g~-d~~~lGNHe~d~--g~~~l~~~~~~~~~~~l~aNv~~~~~~~~~~~~~~i~~~~~g~k 140 (277)
T cd07410 68 E--DGDPHPMIAAMNAL--GY-DAGTLGNHEFNY--GLDYLDKVIKQANFPVLSANVIDADTGEPFLKPYVILERDVGVK 140 (277)
T ss_pred c--cCCCChHHHHHHhc--CC-CEEeecccCccc--CHHHHHHHHHhCCCCEEEEEEEeCCCCCcccCCEEEEEecCCCE
Confidence 0 00011233444444 33 366789999853 22334444444433311 0 01112346667888 866
Q ss_pred EEEEc--cccc--C-----------CCCHHHHHHHHHHHhcccCCCCCEEEEEeCCCCccCCCCCCchhHHHHHHHHHHH
Q 009637 332 FIMLG--AYIS--Y-----------DKSGHQYKWLEKDLANVDRSVTPWLVATWHPPWYSSYSSHYREAECMRVEMEALL 396 (530)
Q Consensus 332 fI~Ld--t~~~--~-----------~~~~~Q~~WL~~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll 396 (530)
+-++. +... . ....+..++..++|++ .+...+|+++|-.......... ..+.....|.
T Consensus 141 VgviG~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~v~~lr~---~~~D~IIvl~H~g~~~~~~~~~----~~~~~~~~la 213 (277)
T cd07410 141 VGIIGLTTPQIPNWEKPNLIGGLKFTDPVETAKKYVPKLRA---EGADVVVVLAHGGFERDLEESL----TGENAAYELA 213 (277)
T ss_pred EEEEecCCcccccccCcccCCCcEEcCHHHHHHHHHHHHHH---cCCCEEEEEecCCcCCCccccc----CCccHHHHHH
Confidence 55544 3210 0 0112234444455544 3566799999987654321000 0111223344
Q ss_pred HH-cCCcEEEEccccCceeeeecccCccCCCCcEEEEeCCCcc
Q 009637 397 YS-YGVDIVFNGHVHAYERSNRVFNYTLDPCGPVHITIGDGGN 438 (530)
Q Consensus 397 ~k-~~VdlvlsGH~H~yeR~~pv~~~~~~~~G~vyIv~G~gG~ 438 (530)
++ .+||++|+||.|...... .-++++.+-+|.-|.
T Consensus 214 ~~~~~vD~IlgGHsH~~~~~~-------~~~~~~v~q~g~~g~ 249 (277)
T cd07410 214 EEVPGIDAILTGHQHRRFPGP-------TVNGVPVVQPGNWGS 249 (277)
T ss_pred hcCCCCcEEEeCCCccccccC-------CcCCEEEEcCChhhC
Confidence 44 589999999999754321 124555555555444
No 56
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=98.59 E-value=3.3e-06 Score=84.47 Aligned_cols=191 Identities=15% Similarity=0.113 Sum_probs=98.6
Q ss_pred eEEEEEccCCCCC-----------ChHHHHHHHHhCCCC-EEEEcCccccccccccCCCCCcccccCCCCCCccccchHH
Q 009637 199 KRIAIVGDLGLTY-----------NTTCTINHMSSNEPD-LVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQPR 266 (530)
Q Consensus 199 ~rf~v~gD~g~~~-----------~~~~~~~~l~~~~pD-fvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~~~ 266 (530)
++|++++|+|.-. .....++++.+.+++ +++.+||++...... . + .+
T Consensus 1 ~~il~~nd~~~~~~~~~~~~gG~~rl~~~i~~~r~~~~~~l~l~~GD~~~g~~~~-------~-------------~-~~ 59 (257)
T cd07406 1 FTILHFNDVYEIAPLDGGPVGGAARFATLRKQLRKENPNTLVLFSGDVLSPSLLS-------T-------------A-TK 59 (257)
T ss_pred CeEEEEccceeecccCCCCcCCHHHHHHHHHHHHhcCCCEEEEECCCccCCccch-------h-------------h-cC
Confidence 4677788877211 123456666667788 999999998432110 0 0 01
Q ss_pred HHHHHHHHHHhhhcCCeEEccCCccccccccccchHHHhhhcCCCCC-------CC---CCCCcceEEEEcCcEEE--EE
Q 009637 267 WDYWGRFMQNLVSKVPIMVVEGNHEIEAQAGNQTFVAYSSRFAFPSE-------ES---GSLSSFYYSFNAGGIHF--IM 334 (530)
Q Consensus 267 wd~~~~~l~~l~~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~-------~~---~~~~~~yYsf~~G~v~f--I~ 334 (530)
.....+.|+.+ . .-+.++||||+... ...+........+|-- .. -.....|.-++.+++++ |.
T Consensus 60 g~~~~~~l~~l--~-~d~~~~GNHefd~g--~~~l~~~~~~~~~~~L~aNi~~~~~~~~~~~~~~~~i~~~~g~kIgviG 134 (257)
T cd07406 60 GKQMVPVLNAL--G-VDLACFGNHEFDFG--EDQLQKRLGESKFPWLSSNVFDATGGGPLPNGKESAIIERAGVKIGLLG 134 (257)
T ss_pred CccHHHHHHhc--C-CcEEeecccccccC--HHHHHHHHhhCCCCEEEEEEEECCCCcccCCCCCeEEEEECCeEEEEEE
Confidence 11223344433 2 23668999998532 2233333333322210 00 01124677788888655 44
Q ss_pred EcccccC------C---CCHHHHHHHHHHHhcccCCCCCEEEEEeCCCCccCCCCCCchhHHHHHHHHHHHHH-cCCcEE
Q 009637 335 LGAYISY------D---KSGHQYKWLEKDLANVDRSVTPWLVATWHPPWYSSYSSHYREAECMRVEMEALLYS-YGVDIV 404 (530)
Q Consensus 335 Ldt~~~~------~---~~~~Q~~WL~~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~k-~~Vdlv 404 (530)
+.+.... . .-.+-.+.+++.+++..+.+...+|++.|-+... .. ++.++ .+||++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~v~~~~~~~~D~iVvl~H~g~~~--------d~-------~la~~~~~iD~I 199 (257)
T cd07406 135 LVEEEWLETLTIDPEYVRYRDYVETARELVDELREQGADLIIALTHMRLPN--------DK-------RLAREVPEIDLI 199 (257)
T ss_pred EecccccccccCCCCcceEcCHHHHHHHHHHHHHhCCCCEEEEEeccCchh--------hH-------HHHHhCCCCceE
Confidence 4432111 0 0122334444444333334567799999987521 11 22233 479999
Q ss_pred EEccccCceeeeecccCccCCCCcEEEEeCCCcc
Q 009637 405 FNGHVHAYERSNRVFNYTLDPCGPVHITIGDGGN 438 (530)
Q Consensus 405 lsGH~H~yeR~~pv~~~~~~~~G~vyIv~G~gG~ 438 (530)
|+||.|..... ..++++.+-+|.-|.
T Consensus 200 lgGH~H~~~~~--------~~~~t~vv~~g~~g~ 225 (257)
T cd07406 200 LGGHDHEYILV--------QVGGTPIVKSGSDFR 225 (257)
T ss_pred EecccceeEee--------eECCEEEEeCCcCcc
Confidence 99999986622 124555555555544
No 57
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=98.56 E-value=1.5e-07 Score=89.38 Aligned_cols=32 Identities=19% Similarity=0.313 Sum_probs=24.8
Q ss_pred EEEeCCCCccCCCCCCchhHHHHHHHHHHHHHcCCcEEEEccccCceeee
Q 009637 367 VATWHPPWYSSYSSHYREAECMRVEMEALLYSYGVDIVFNGHVHAYERSN 416 (530)
Q Consensus 367 Iv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~k~~VdlvlsGH~H~yeR~~ 416 (530)
|++.|.|.+- ...+.+++++||||+|.-++..
T Consensus 129 ilL~H~P~~~------------------~~~~~~~dl~lSGHtHgGqi~~ 160 (193)
T cd08164 129 ILLTHVPLYK------------------IFLEGKPGLILTGHDHEGCDYQ 160 (193)
T ss_pred EEEEccccee------------------ccccCCCCEEEeCccCCCeEEE
Confidence 8899999764 2234589999999999977764
No 58
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=98.54 E-value=7.2e-07 Score=94.35 Aligned_cols=40 Identities=23% Similarity=0.340 Sum_probs=30.4
Q ss_pred CeEEEEEccCCCCCC---------h----HHHHHHHHhCCCCEEEEcCccccc
Q 009637 198 PKRIAIVGDLGLTYN---------T----TCTINHMSSNEPDLVLLVGDVTYA 237 (530)
Q Consensus 198 ~~rf~v~gD~g~~~~---------~----~~~~~~l~~~~pDfvl~~GDl~Ya 237 (530)
.+||++++|+|.+.. . ..+++.+.+.++|+||++||+...
T Consensus 3 ~mKIlh~SD~HlG~~~~~~~r~~D~~~~f~eil~~a~~~~vD~VLiaGDLFd~ 55 (405)
T TIGR00583 3 TIRILVSTDNHVGYGENDPVRGDDSWNTFEEVLQIAKEQDVDMILLGGDLFHE 55 (405)
T ss_pred ceEEEEEcCCCCCCccCCchhhhhHHHHHHHHHHHHHHcCCCEEEECCccCCC
Confidence 589999999998632 1 233444556899999999999954
No 59
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=98.38 E-value=2.6e-06 Score=90.36 Aligned_cols=74 Identities=23% Similarity=0.373 Sum_probs=50.9
Q ss_pred eEEEEEccCCCCC---C-----------hHHHHHHHHhCCCCEEEEcCccccccccccCCCCCcccccCCCCCCccccch
Q 009637 199 KRIAIVGDLGLTY---N-----------TTCTINHMSSNEPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQ 264 (530)
Q Consensus 199 ~rf~v~gD~g~~~---~-----------~~~~~~~l~~~~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~ 264 (530)
+||++.+|+|.+. + ....++.+.+.++||||++||+.... . |. .
T Consensus 1 mkilHtSD~HLG~~~~~~~~r~~d~~~~f~~~l~~a~~~~vD~vliAGDlFd~~------~------------Ps----~ 58 (390)
T COG0420 1 MKILHTSDWHLGSKQLNLPSRLEDQKKAFDELLEIAKEEKVDFVLIAGDLFDTN------N------------PS----P 58 (390)
T ss_pred CeeEEecccccchhhccCccchHHHHHHHHHHHHHHHHccCCEEEEccccccCC------C------------CC----H
Confidence 5899999999982 1 12345556678999999999999532 1 00 0
Q ss_pred HHHHHHHHHHHHhh-hcCCeEEccCCccccc
Q 009637 265 PRWDYWGRFMQNLV-SKVPIMVVEGNHEIEA 294 (530)
Q Consensus 265 ~~wd~~~~~l~~l~-~~vP~~~v~GNHD~~~ 294 (530)
.--..+.+.++.+. .++|++++.||||...
T Consensus 59 ~a~~~~~~~l~~l~~~~Ipv~~I~GNHD~~~ 89 (390)
T COG0420 59 RALKLFLEALRRLKDAGIPVVVIAGNHDSPS 89 (390)
T ss_pred HHHHHHHHHHHHhccCCCcEEEecCCCCchh
Confidence 11133455566653 5899999999999864
No 60
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=98.35 E-value=1.2e-05 Score=80.40 Aligned_cols=188 Identities=18% Similarity=0.216 Sum_probs=100.3
Q ss_pred EEEEccCCCCCChHHHHH---HHHh---CCCCEEEEcCccccccccccCCCCCcccccCCCCCCccccchHHHHHHHHHH
Q 009637 201 IAIVGDLGLTYNTTCTIN---HMSS---NEPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQPRWDYWGRFM 274 (530)
Q Consensus 201 f~v~gD~g~~~~~~~~~~---~l~~---~~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~~~wd~~~~~l 274 (530)
|+|.||.|.. ...+.+ .+.+ .++|++|++||+.-. + +....++. .....|. .+..|.+.+
T Consensus 1 i~v~Gd~HG~--~~~~~~~~~~~~~~~~~~~D~lI~~GDf~~~--~--~~~d~~~~-------~~p~k~~-~~~~f~~~~ 66 (262)
T cd00844 1 IAVEGCCHGE--LDKIYETLEKIEKKEGTKVDLLICCGDFQAV--R--NEADLKCM-------AVPPKYR-KMGDFYKYY 66 (262)
T ss_pred CEEEecCCcc--HHHHHHHHHHHHHhcCCCCcEEEEcCCCCCc--C--Ccchhhhh-------ccchhhh-hhhhHHHHh
Confidence 5899999974 333333 3322 469999999999621 1 11111110 0111221 234444444
Q ss_pred HHh-hhcCCeEEccCCccccccccccchHHHhhhcCCCCCCCCCCCcceE-----EEEcCcEEEEEEcccc---cCC---
Q 009637 275 QNL-VSKVPIMVVEGNHEIEAQAGNQTFVAYSSRFAFPSEESGSLSSFYY-----SFNAGGIHFIMLGAYI---SYD--- 342 (530)
Q Consensus 275 ~~l-~~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~~~~~~~~~yY-----sf~~G~v~fI~Ldt~~---~~~--- 342 (530)
+.. ...+|+++|.||||... .+ .. ++..+. ...+.+| .+++++++|..|.... ++.
T Consensus 67 ~g~~~~p~~t~fi~GNHE~~~--------~l-~~--l~~gg~-v~~Ni~~Lg~~~v~~~~GlrIaGLsG~~~~~~~~~~~ 134 (262)
T cd00844 67 SGEKKAPILTIFIGGNHEASN--------YL-WE--LPYGGW-VAPNIYYLGYAGVVNFGGLRIAGLSGIYKSHDYRKGH 134 (262)
T ss_pred cCCccCCeeEEEECCCCCCHH--------HH-Hh--hcCCCe-ecCcEEEecCCCEEEECCeEEEEeccccccccccccc
Confidence 443 25778899999999631 11 11 111110 0123443 3567899999998622 111
Q ss_pred -----CCHHHHHHHH-------HHHhcccCCCCCEEEEEeCCCCccCCCCCCch--------h-------HHHHHHHHHH
Q 009637 343 -----KSGHQYKWLE-------KDLANVDRSVTPWLVATWHPPWYSSYSSHYRE--------A-------ECMRVEMEAL 395 (530)
Q Consensus 343 -----~~~~Q~~WL~-------~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~--------~-------~~~r~~l~~l 395 (530)
..+.++..+. +.|.... .+--|+++|.|+.......... . ..-...+..|
T Consensus 135 ~~~~~~t~~~~rs~y~~r~~~~~kl~~~~---~~vDIlLSHdWP~gI~~~~~~~~l~~~~~~~~~~~~~~~~Gs~~~~~l 211 (262)
T cd00844 135 FERPPYSEDTKRSAYHVRNIEVFKLKQLK---QPIDIFLSHDWPRGIYKHGDKKQLLRKKPFFRQDIESGTLGSPAAEEL 211 (262)
T ss_pred ccCCCCCHHHHHHhhhhhHHHHHHHHhcC---CCCcEEEeCCCCcchhhccchHHhhhcCccchhcccccCCCCHHHHHH
Confidence 1233333211 1122221 1225899999987653211100 0 0112467789
Q ss_pred HHHcCCcEEEEccccC-ceeeee
Q 009637 396 LYSYGVDIVFNGHVHA-YERSNR 417 (530)
Q Consensus 396 l~k~~VdlvlsGH~H~-yeR~~p 417 (530)
+.+.+....|+||.|. |++..|
T Consensus 212 l~~lkPryhf~gH~H~~f~~~~~ 234 (262)
T cd00844 212 LKHLKPRYWFSAHLHVKFAALVP 234 (262)
T ss_pred HHHhCCCEEEEecCCcccceecC
Confidence 9999999999999998 776654
No 61
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=98.34 E-value=9.3e-06 Score=81.51 Aligned_cols=178 Identities=16% Similarity=0.182 Sum_probs=90.5
Q ss_pred HHHHHHHhC-CCCEE-EEcCccccccccccCCCCCcccccCCCCCCccccchHHHHHHHHHHHHhhhcCCeEEccCCccc
Q 009637 215 CTINHMSSN-EPDLV-LLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQPRWDYWGRFMQNLVSKVPIMVVEGNHEI 292 (530)
Q Consensus 215 ~~~~~l~~~-~pDfv-l~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~~~wd~~~~~l~~l~~~vP~~~v~GNHD~ 292 (530)
..++++.+. ++|.+ +.+||+...... . ...+.....+.|+. +++.++.||||+
T Consensus 40 ~~v~~~~~~~~~~~l~l~~GD~~~gs~~-------~--------------~~~~g~~~~~~l~~----~g~da~~GNHef 94 (264)
T cd07411 40 TLIKRIRAERNPNTLLLDGGDTWQGSGE-------A--------------LYTRGQAMVDALNA----LGVDAMVGHWEF 94 (264)
T ss_pred HHHHHHHHhcCCCeEEEeCCCccCCChH-------H--------------hhcCChhHHHHHHh----hCCeEEeccccc
Confidence 446666666 89977 579999953210 0 00111222333333 555555599998
Q ss_pred cccccccchHHHhhhcCCCCCCC-------C-CCCcceEEEEcCcEE--EEEEcccccCC--C--------CHHHHHHHH
Q 009637 293 EAQAGNQTFVAYSSRFAFPSEES-------G-SLSSFYYSFNAGGIH--FIMLGAYISYD--K--------SGHQYKWLE 352 (530)
Q Consensus 293 ~~~~~~~~f~~y~~~f~~P~~~~-------~-~~~~~yYsf~~G~v~--fI~Ldt~~~~~--~--------~~~Q~~WL~ 352 (530)
.. +...+....+...+|--.+ + .....|.-++.++++ ||.+.+..... . .....+.++
T Consensus 95 d~--g~~~l~~~~~~~~~~~l~aN~~~~~~~~~~~~~~~i~~~~g~kVgviG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (264)
T cd07411 95 TY--GPERVRELFGRLNWPFLAANVYDDEAGERVFPPYRIKEVGGVKIGVIGQTFPYVPIANPPRFTPGLTFGIREEELQ 172 (264)
T ss_pred cc--CHHHHHHHHhhCCCCEEEEEEEeCCCCCcccCCEEEEEECCEEEEEEEeccCCcccccCcCCCCCcEECCHHHHHH
Confidence 53 2233444444444332100 0 111235567788754 55555421100 0 122344555
Q ss_pred HHHhccc-CCCCCEEEEEeCCCCccCCCCCCchhHHHHHHHHHHHHH-cCCcEEEEccccCceeeeecccCccCCCCcEE
Q 009637 353 KDLANVD-RSVTPWLVATWHPPWYSSYSSHYREAECMRVEMEALLYS-YGVDIVFNGHVHAYERSNRVFNYTLDPCGPVH 430 (530)
Q Consensus 353 ~~L~~~~-r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~k-~~VdlvlsGH~H~yeR~~pv~~~~~~~~G~vy 430 (530)
+.+++.. ..+...+|++.|-+... .. .+.++ .+||++|+||.|..... |. ..-++++.
T Consensus 173 ~~~~~~~~~~~~D~iI~l~H~g~~~--------~~-------~la~~~~~iDlilgGH~H~~~~~-~~----~~~~~t~v 232 (264)
T cd07411 173 EVVVKLRREEGVDVVVLLSHNGLPV--------DV-------ELAERVPGIDVILSGHTHERTPK-PI----IAGGGTLV 232 (264)
T ss_pred HHHHHHHHhCCCCEEEEEecCCchh--------hH-------HHHhcCCCCcEEEeCcccccccC-cc----cccCCEEE
Confidence 5433321 24567799999987531 11 12222 47999999999974322 11 01256776
Q ss_pred EEeCCCccc
Q 009637 431 ITIGDGGNL 439 (530)
Q Consensus 431 Iv~G~gG~~ 439 (530)
+-+|.-|..
T Consensus 233 ~~~g~~~~~ 241 (264)
T cd07411 233 VEAGSHGKF 241 (264)
T ss_pred EEcCccccE
Confidence 766666553
No 62
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=98.30 E-value=1.2e-05 Score=80.44 Aligned_cols=182 Identities=20% Similarity=0.195 Sum_probs=91.6
Q ss_pred eEEEEEccCCCCCC--------h---HHHHHHHHhCCCCEEEEcCccccccccccCCCCCcccccCCCCCCccccchHHH
Q 009637 199 KRIAIVGDLGLTYN--------T---TCTINHMSSNEPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQPRW 267 (530)
Q Consensus 199 ~rf~v~gD~g~~~~--------~---~~~~~~l~~~~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~~~w 267 (530)
++|++++|+|.... . ...++++.+.+.++++.+||++...... . ....
T Consensus 1 i~il~~~D~H~~~~~~~~~~~g~~~l~~~i~~~~~~~~~l~l~~GD~~~gs~~~-------------------~--~~~g 59 (257)
T cd07408 1 ITILHTNDIHGRIDEDDNNGIGYAKLATYKKEMNKLDNDLLVDAGDAIQGLPIS-------------------D--LDKG 59 (257)
T ss_pred CEEEEeccCcccccCCCCccccHHHHHHHHHHHHhcCCEEEEeCCCcCCCchhh-------------------h--hcCC
Confidence 47899999996421 1 2334455444678999999998431100 0 0011
Q ss_pred HHHHHHHHHhhhcCCeEEccCCccccccccccchHHHhhhcCCCCC-------CCCC-CCcceEEEEcC-cE--EEEEEc
Q 009637 268 DYWGRFMQNLVSKVPIMVVEGNHEIEAQAGNQTFVAYSSRFAFPSE-------ESGS-LSSFYYSFNAG-GI--HFIMLG 336 (530)
Q Consensus 268 d~~~~~l~~l~~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~-------~~~~-~~~~yYsf~~G-~v--~fI~Ld 336 (530)
....+.|+.+ ..-+ .++||||+.. +...+..+.....+|-- +.+. .-..|.-++.+ ++ -||.+-
T Consensus 60 ~~~~~~ln~~--g~d~-~~~GNHefd~--G~~~l~~~~~~~~~~~l~aNv~~~~~~~~~~~py~i~~~~~G~kIgviG~~ 134 (257)
T cd07408 60 ETIIKIMNAV--GYDA-VTPGNHEFDY--GLDRLKELSKEADFPFLSANVYDNDTGKRVFKPYKIKELGNGVKVGVIGLT 134 (257)
T ss_pred cHHHHHHHhc--CCcE-EccccccccC--CHHHHHHHHhhCCCCEEEEEEEEcCCCCcccCCEEEEEcCCCCEEEEEeec
Confidence 1223344433 3344 5679999852 23344444454444431 0010 11224555777 64 455554
Q ss_pred ccc-cC--CC-------CHHHHHHHHHH-HhcccCCCCCEEEEEeCCCCccCCCCCCchhHHHHHHHHHHHHH-cCCcEE
Q 009637 337 AYI-SY--DK-------SGHQYKWLEKD-LANVDRSVTPWLVATWHPPWYSSYSSHYREAECMRVEMEALLYS-YGVDIV 404 (530)
Q Consensus 337 t~~-~~--~~-------~~~Q~~WL~~~-L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~k-~~Vdlv 404 (530)
+.. .. .+ -.+-.+-+++. ..+..+.+...+|++.|......... + . ... +..+ .+||++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~~~~D~iIvl~H~G~~~~~~~-~-~----~~~---la~~~~giDvI 205 (257)
T cd07408 135 TPETATKTHPKNVKDVTFEDPIEEAKKVIVAALKAKGADVIVALGHLGVDRTSSP-W-T----STE---LAANVTGIDLI 205 (257)
T ss_pred CcCcccccCccccCCcEEecHHHHHHHHHHHHHHhCCCCEEEEEeCcCcCCCCCC-c-c----HHH---HHHhCCCceEE
Confidence 421 00 00 01122333333 22222245677999999886543211 1 1 111 2222 489999
Q ss_pred EEccccCceee
Q 009637 405 FNGHVHAYERS 415 (530)
Q Consensus 405 lsGH~H~yeR~ 415 (530)
|.||.|.....
T Consensus 206 igGH~H~~~~~ 216 (257)
T cd07408 206 IDGHSHTTIEI 216 (257)
T ss_pred EeCCCcccccC
Confidence 99999986543
No 63
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.28 E-value=3.5e-05 Score=76.74 Aligned_cols=192 Identities=15% Similarity=0.226 Sum_probs=102.1
Q ss_pred EEEEEccCCCCCCh---HHHHHHHHh-CCCCEEEEcCccccccccccCCCCCcccccCCCCCCccccchHHHHHHHHHHH
Q 009637 200 RIAIVGDLGLTYNT---TCTINHMSS-NEPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQPRWDYWGRFMQ 275 (530)
Q Consensus 200 rf~v~gD~g~~~~~---~~~~~~l~~-~~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~~~wd~~~~~l~ 275 (530)
||+++||.=..... ...+.++.+ .++||++..||.+-. |... . ....+.|.
T Consensus 1 ~ilfigdi~g~~G~~~~~~~l~~lk~~~~~D~vi~NgEn~~g------g~gl----------------~---~~~~~~L~ 55 (255)
T cd07382 1 KILFIGDIVGKPGRKAVKEHLPKLKKEYKIDFVIANGENAAG------GKGI----------------T---PKIAKELL 55 (255)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHHCCCCEEEECCccccC------CCCC----------------C---HHHHHHHH
Confidence 58899998544332 233444543 579999999999842 2110 0 12223333
Q ss_pred HhhhcCCeEEccCCccccccccccchHHHhhhcC---CCCCC-CCCCCcceEEEEcCcEEEEEEcc--cccCCCCHHHHH
Q 009637 276 NLVSKVPIMVVEGNHEIEAQAGNQTFVAYSSRFA---FPSEE-SGSLSSFYYSFNAGGIHFIMLGA--YISYDKSGHQYK 349 (530)
Q Consensus 276 ~l~~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~---~P~~~-~~~~~~~yYsf~~G~v~fI~Ldt--~~~~~~~~~Q~~ 349 (530)
.+ .+-+ ++.|||++... ....+..... .|.+- .......|+-++.+++++-+++- .........-++
T Consensus 56 ~~--G~D~-iTlGNH~fD~g----el~~~l~~~~~~l~~aN~~~~~pg~~~~i~~~~G~kIaVigl~g~~~~~~~~~P~~ 128 (255)
T cd07382 56 SA--GVDV-ITMGNHTWDKK----EILDFIDEEPRLLRPANYPPGTPGRGYGVVEVNGKKIAVINLMGRVFMPPLDNPFR 128 (255)
T ss_pred hc--CCCE-EEecccccCcc----hHHHHHhcCcCceEeeecCCCCCCCCeEEEEECCEEEEEEEEecccCCCcCCCHHH
Confidence 33 3444 45599998632 2333333321 11111 11223457778888866555442 211111122234
Q ss_pred HHHHHHhcccCCCCCEEEEEeCCCCccCCCCCCchhHHHHHHHHHHHHHcCCcEEEEccccCceeeeecccCccCCCCcE
Q 009637 350 WLEKDLANVDRSVTPWLVATWHPPWYSSYSSHYREAECMRVEMEALLYSYGVDIVFNGHVHAYERSNRVFNYTLDPCGPV 429 (530)
Q Consensus 350 WL~~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~k~~VdlvlsGH~H~yeR~~pv~~~~~~~~G~v 429 (530)
-+++.+++.+. +...+||.+|--.. .+ +.++.. ...-+||+++.||+|...-- .++-|+|+.
T Consensus 129 ~~~~~v~~lk~-~~D~IIV~~H~g~t-------sE----k~ala~-~ldg~VdvIvGtHTHv~t~d-----~~il~~gTa 190 (255)
T cd07382 129 AADELLEELKE-EADIIFVDFHAEAT-------SE----KIALGW-YLDGRVSAVVGTHTHVQTAD-----ERILPGGTA 190 (255)
T ss_pred HHHHHHHHHhc-CCCEEEEEECCCCC-------HH----HHHHHH-hCCCCceEEEeCCCCccCCc-----cEEeeCCeE
Confidence 45555555443 46679999997321 11 122321 12336999999999975322 112368999
Q ss_pred EEEe-CCCccccc
Q 009637 430 HITI-GDGGNLEK 441 (530)
Q Consensus 430 yIv~-G~gG~~e~ 441 (530)
||+. |.-|..++
T Consensus 191 ~itd~Gm~G~~~s 203 (255)
T cd07382 191 YITDVGMTGPYDS 203 (255)
T ss_pred EEecCccccCCCc
Confidence 9875 66666544
No 64
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=98.28 E-value=1.8e-05 Score=80.43 Aligned_cols=85 Identities=14% Similarity=0.094 Sum_probs=46.9
Q ss_pred HHHHHHHhcccCCCCCEEEEEeCCCCccCCCCCCchhHHHHHHHHHHHHH--cCCcEEEEccccCceeeeecccCccCCC
Q 009637 349 KWLEKDLANVDRSVTPWLVATWHPPWYSSYSSHYREAECMRVEMEALLYS--YGVDIVFNGHVHAYERSNRVFNYTLDPC 426 (530)
Q Consensus 349 ~WL~~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~k--~~VdlvlsGH~H~yeR~~pv~~~~~~~~ 426 (530)
+-+++.+++.+..+...+|++.|-.......... .+........++.+ .+||++|+||.|..... +. ..-+
T Consensus 178 e~~~~~v~~lr~~~~D~IIvL~H~G~~~~~~~~~--~~~~~~~~~~l~~~~~~~iD~IlgGHsH~~~~~-~~----~~~~ 250 (288)
T cd07412 178 EAINAVAPELKAGGVDAIVVLAHEGGSTKGGDDT--CSAASGPIADIVNRLDPDVDVVFAGHTHQAYNC-TV----PAGN 250 (288)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeCCCCCCCCCCcc--ccccChhHHHHHhhcCCCCCEEEeCccCccccc-cc----cCcC
Confidence 4455544444334567799999977543221100 00011122334444 37999999999986542 10 0236
Q ss_pred CcEEEEeCCCcccc
Q 009637 427 GPVHITIGDGGNLE 440 (530)
Q Consensus 427 G~vyIv~G~gG~~e 440 (530)
+++.+-+|+-|..-
T Consensus 251 ~~~v~q~g~~g~~v 264 (288)
T cd07412 251 PRLVTQAGSYGKAV 264 (288)
T ss_pred CEEEEecChhhcee
Confidence 77777777776643
No 65
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=98.21 E-value=2.8e-05 Score=72.72 Aligned_cols=137 Identities=20% Similarity=0.219 Sum_probs=82.5
Q ss_pred eEEEEEccCCCCCC-hHHHHHHHHhCCCCEEEEcCccccccccccCCCCCcccccCCCCCCccccchHHHHHHHHHHHHh
Q 009637 199 KRIAIVGDLGLTYN-TTCTINHMSSNEPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQPRWDYWGRFMQNL 277 (530)
Q Consensus 199 ~rf~v~gD~g~~~~-~~~~~~~l~~~~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~~~wd~~~~~l~~l 277 (530)
++|+++||+|.... .....+.....++|+|+|+||.+... . .+.+...
T Consensus 2 m~ilviSDtH~~~~~~~~~~~~~~~~~~d~vih~GD~~~~~------~---------------------~~~l~~~---- 50 (172)
T COG0622 2 MKILVISDTHGPLRAIEKALKIFNLEKVDAVIHAGDSTSPF------T---------------------LDALEGG---- 50 (172)
T ss_pred cEEEEEeccCCChhhhhHHHHHhhhcCCCEEEECCCcCCcc------c---------------------hHHhhcc----
Confidence 68999999998653 23344444567999999999999521 1 0111110
Q ss_pred hhcCCeEEccCCccccccccccchHHHhhhcCCCCCCCCCCCcceEEEEcCcEEEEEEcccccCCCCHHHHHHHHHHHhc
Q 009637 278 VSKVPIMVVEGNHEIEAQAGNQTFVAYSSRFAFPSEESGSLSSFYYSFNAGGIHFIMLGAYISYDKSGHQYKWLEKDLAN 357 (530)
Q Consensus 278 ~~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~Ldt~~~~~~~~~Q~~WL~~~L~~ 357 (530)
-..++++|.||.|..... -..|. --.+.++++
T Consensus 51 -~~~~i~~V~GN~D~~~~~-----------~~~p~---------~~~~~~~g~--------------------------- 82 (172)
T COG0622 51 -LAAKLIAVRGNCDGEVDQ-----------EELPE---------ELVLEVGGV--------------------------- 82 (172)
T ss_pred -cccceEEEEccCCCcccc-----------ccCCh---------hHeEEECCE---------------------------
Confidence 257899999999985210 01111 111233322
Q ss_pred ccCCCCCEEEEEeCCCCccCCCCCCchhHHHHHHHHHHHHHcCCcEEEEccccCceeeeecccCccCCCCcEEEEeCCCc
Q 009637 358 VDRSVTPWLVATWHPPWYSSYSSHYREAECMRVEMEALLYSYGVDIVFNGHVHAYERSNRVFNYTLDPCGPVHITIGDGG 437 (530)
Q Consensus 358 ~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~k~~VdlvlsGH~H~yeR~~pv~~~~~~~~G~vyIv~G~gG 437 (530)
+|.+.|--.|... . -...++.+-++.++|+++.||+|...... .+|+++|..|+..
T Consensus 83 --------ki~l~HGh~~~~~-~-------~~~~l~~la~~~~~Dvli~GHTH~p~~~~--------~~~i~~vNPGS~s 138 (172)
T COG0622 83 --------KIFLTHGHLYFVK-T-------DLSLLEYLAKELGADVLIFGHTHKPVAEK--------VGGILLVNPGSVS 138 (172)
T ss_pred --------EEEEECCCccccc-c-------CHHHHHHHHHhcCCCEEEECCCCcccEEE--------ECCEEEEcCCCcC
Confidence 4556664333211 0 12356666777899999999999865543 2678888777654
Q ss_pred c
Q 009637 438 N 438 (530)
Q Consensus 438 ~ 438 (530)
.
T Consensus 139 ~ 139 (172)
T COG0622 139 G 139 (172)
T ss_pred C
Confidence 4
No 66
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=98.21 E-value=0.00011 Score=74.55 Aligned_cols=203 Identities=16% Similarity=0.206 Sum_probs=102.0
Q ss_pred CeEEEEEccCCCCCC--------------hHHHHHHHH----hCCCC-EEEEcCccccccccccCCCCCcccccCCCCCC
Q 009637 198 PKRIAIVGDLGLTYN--------------TTCTINHMS----SNEPD-LVLLVGDVTYANLYLTNGTGSDCYSCSFSKTP 258 (530)
Q Consensus 198 ~~rf~v~gD~g~~~~--------------~~~~~~~l~----~~~pD-fvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~ 258 (530)
.++|++.+|+|.... ..+.++++. +.+++ ++|..||......+
T Consensus 5 ~ltILhtnD~Hg~l~~~~~~~~~~~~~gg~a~~i~~~~~~~~~~~~~~Llld~GD~~qGs~~------------------ 66 (282)
T cd07407 5 DINFLHTTDTHGWLGGHLNDPNYSADWGDFASFVEHMREKADQKGVDLLLVDTGDLHDGNGL------------------ 66 (282)
T ss_pred eEEEEEEcccccCCcCcCCcccccCCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCccCCeec------------------
Confidence 589999999996421 022333332 23555 67889999953211
Q ss_pred ccccchHHHHHHHHHHHHhhhcCCe-EEccCCcccccccc-ccchHHHhhhcCCCCC--------CCCC---CCcceEEE
Q 009637 259 IHETYQPRWDYWGRFMQNLVSKVPI-MVVEGNHEIEAQAG-NQTFVAYSSRFAFPSE--------ESGS---LSSFYYSF 325 (530)
Q Consensus 259 ~~~~y~~~wd~~~~~l~~l~~~vP~-~~v~GNHD~~~~~~-~~~f~~y~~~f~~P~~--------~~~~---~~~~yYsf 325 (530)
...+...+....+.|+. +++ .+++||||+..... ...+..+.....+|-- +.+. ....|.-+
T Consensus 67 -~~~~~~~g~~~~~~mN~----mgyDa~tlGNHEFd~g~~~l~~l~~~~~~~~fp~l~aNi~~~~~~~~~~~~~~~y~i~ 141 (282)
T cd07407 67 -SDASPPPGSYSNPIFRM----MPYDLLTIGNHELYNYEVADDEYEGFVPSWGDRYLTSNVDITDDSGLLVPIGSRYRKF 141 (282)
T ss_pred -eeeecCCChHHHHHHHh----cCCcEEeecccccCccccHHHHHHHHHhhcCCCEEEEEEEEeCCCCcccccccceEEE
Confidence 11111122333444444 343 56899999953211 1112223232222220 0001 11235666
Q ss_pred EcC-cEE--EEEEccccc-------CCCC--HHHHHHHHHHHhcccCCCCCEEEEEeCCCCccCCCCCCchhHHHHHHHH
Q 009637 326 NAG-GIH--FIMLGAYIS-------YDKS--GHQYKWLEKDLANVDRSVTPWLVATWHPPWYSSYSSHYREAECMRVEME 393 (530)
Q Consensus 326 ~~G-~v~--fI~Ldt~~~-------~~~~--~~Q~~WL~~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~ 393 (530)
+.+ +++ +|.+-+... +... ..+.+|+.+.|++ .+...+|++.|...... .+ ..+...
T Consensus 142 ~~~~G~kIgiiGltt~~~~~~~~~~f~d~~~~~~~~~v~~~l~~---~~~DvIIvlsH~G~~~d-----~~---~~~~~~ 210 (282)
T cd07407 142 TTKHGLRVLAFGFLFDFKGAANGVTVQPVADVVQEPWFQDAINN---EDVDLILVLGHMPVRDD-----AE---FKVLHD 210 (282)
T ss_pred EcCCCcEEEEEEEecccccCCCCcEEcCHHHHHHHHHHHHHHHh---cCCCEEEEEeCCCCCCC-----cc---HHHHHH
Confidence 776 655 455533211 0111 1223488777874 34667999999876432 11 111122
Q ss_pred HHHHHc-CCc-EEEEccccCceeeeecccCccCCCCcEEEEeCCCccccc
Q 009637 394 ALLYSY-GVD-IVFNGHVHAYERSNRVFNYTLDPCGPVHITIGDGGNLEK 441 (530)
Q Consensus 394 ~ll~k~-~Vd-lvlsGH~H~yeR~~pv~~~~~~~~G~vyIv~G~gG~~e~ 441 (530)
.+.++. ++| ++|.||.|..... ++ .+|++.+-.|.-|..-+
T Consensus 211 ~la~~~~~id~~Ii~GHsH~~~~~-~~------~~~~~ivq~G~~g~~lg 253 (282)
T cd07407 211 AIRKIFPDTPIQFLGGHSHVRDFT-QY------DSSSTGLESGRYLETVG 253 (282)
T ss_pred HHHHhCCCCCEEEEeCCcccccce-ec------cCcEEEEeccchhhceE
Confidence 233444 577 7999999975332 11 25666666676665443
No 67
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=98.20 E-value=0.00011 Score=73.55 Aligned_cols=194 Identities=17% Similarity=0.185 Sum_probs=104.9
Q ss_pred eEEEEEccCCCCCCh---HHHHHHHHh-CCCCEEEEcCccccccccccCCCCCcccccCCCCCCccccchHHHHHHHHHH
Q 009637 199 KRIAIVGDLGLTYNT---TCTINHMSS-NEPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQPRWDYWGRFM 274 (530)
Q Consensus 199 ~rf~v~gD~g~~~~~---~~~~~~l~~-~~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~~~wd~~~~~l 274 (530)
+||+++||.=..... ...+.++.+ .++||++..||.+-. |... . ....+.|
T Consensus 1 m~ilfiGDi~G~~Gr~~l~~~L~~lk~~~~~D~vIaNgEn~~g------G~Gi----------------~---~~~~~~L 55 (266)
T TIGR00282 1 IKFLFIGDVYGKAGRKIVKNNLPQLKSKYQADLVIANGENTTH------GKGL----------------T---LKIYEFL 55 (266)
T ss_pred CeEEEEEecCCHHHHHHHHHHHHHHHHhCCCCEEEEcCcccCC------CCCC----------------C---HHHHHHH
Confidence 589999998543211 234455543 579999999999832 2110 0 1112223
Q ss_pred HHhhhcCCeEEccCCccccccccccchHH---HhhhcCCCCCCCCCCCcceEEEEcCcEEEEEEcc--cccCCC--CHHH
Q 009637 275 QNLVSKVPIMVVEGNHEIEAQAGNQTFVA---YSSRFAFPSEESGSLSSFYYSFNAGGIHFIMLGA--YISYDK--SGHQ 347 (530)
Q Consensus 275 ~~l~~~vP~~~v~GNHD~~~~~~~~~f~~---y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~Ldt--~~~~~~--~~~Q 347 (530)
.. ..+-++.+ |||++........... ......+|.. ..+..|..++.++.++-+++- .....+ ...-
T Consensus 56 ~~--~GvDviT~-GNH~~Dkge~~~~i~~~~~~lrpanyp~~---~pG~g~~i~~~nG~kiaVinl~G~~fm~~~~~~~P 129 (266)
T TIGR00282 56 KQ--SGVNYITM-GNHTWFQKLILDVVINQKDLVRPLNFDTS---FAGKGSLVFEFNGAKIAVTNLQGTSVNLPFKTTNP 129 (266)
T ss_pred Hh--cCCCEEEc-cchhccCcHHHHHHhccccccccCCCCCC---CCCCCcEEEEECCEEEEEEECCCcccCCccccCCH
Confidence 32 35566655 9999963210000111 1111123322 223446667888766655542 211111 1222
Q ss_pred HHHHHHHHhcccCCCCCEEEEEeCCCCccCCCCCCchhHHHHHHHHHHHHHcCCcEEEEccccCceeeeecccCccCCCC
Q 009637 348 YKWLEKDLANVDRSVTPWLVATWHPPWYSSYSSHYREAECMRVEMEALLYSYGVDIVFNGHVHAYERSNRVFNYTLDPCG 427 (530)
Q Consensus 348 ~~WL~~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~k~~VdlvlsGH~H~yeR~~pv~~~~~~~~G 427 (530)
++-+++.+++.+. +++.+||.+|--. .. .+.....+.+.+|++|+.-|.|...--.++ =|+|
T Consensus 130 f~~~d~~i~~lk~-~~d~IIVd~Haea-----------ts-EK~a~~~~ldg~vsaVvGtHtHV~TaD~~i-----l~~g 191 (266)
T TIGR00282 130 FKVLKELINMLKK-DCDLIFVDFHAET-----------TS-EKNAFGMAFDGYVTAVVGTHTHVPTADLRI-----LPKG 191 (266)
T ss_pred HHHHHHHHHhhhc-CCCEEEEEeCCCC-----------HH-HHHHHHHHhCCCccEEEeCCCCCCCCccee-----CCCC
Confidence 3334555554432 3667999999532 11 133456677789999999999974332221 3689
Q ss_pred cEEEEe-CCCccccc
Q 009637 428 PVHITI-GDGGNLEK 441 (530)
Q Consensus 428 ~vyIv~-G~gG~~e~ 441 (530)
+.||+- |.-|..++
T Consensus 192 tayitD~Gm~G~~~s 206 (266)
T TIGR00282 192 TAYITDVGMTGPFGS 206 (266)
T ss_pred CEEEecCCcccCccc
Confidence 999984 77777654
No 68
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.19 E-value=3.2e-05 Score=74.88 Aligned_cols=193 Identities=16% Similarity=0.211 Sum_probs=99.2
Q ss_pred EEccCCCCCChH---HHH-HHHHhC--CCCEEEEcCccccccccccCCCCCcccccCCCCCCccccchHHHHHHHHHHHH
Q 009637 203 IVGDLGLTYNTT---CTI-NHMSSN--EPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQPRWDYWGRFMQN 276 (530)
Q Consensus 203 v~gD~g~~~~~~---~~~-~~l~~~--~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~~~wd~~~~~l~~ 276 (530)
+++|+|.+.... ..+ +-|... +.|.+.++||++. .|. |.. .+.+--++..+.+..
T Consensus 2 FISDlHL~~~~p~~t~~fl~Fl~~~a~~ad~lyilGDifd--~w~--g~~---------------~~~~~~~~V~~~l~~ 62 (237)
T COG2908 2 FISDLHLGPKRPALTAFFLDFLREEAAQADALYILGDIFD--GWI--GDD---------------EPPQLHRQVAQKLLR 62 (237)
T ss_pred eeeccccCCCCcHHHHHHHHHHHhccccCcEEEEechhhh--hhh--cCC---------------cccHHHHHHHHHHHH
Confidence 689999884432 222 323333 4599999999993 442 220 011112233333444
Q ss_pred h-hhcCCeEEccCCccccccccccchHHHhhhcCCCCCCCCCCCcceEEEEcCcEEEEEEcccccCCCCHHHHHHHHHHH
Q 009637 277 L-VSKVPIMVVEGNHEIEAQAGNQTFVAYSSRFAFPSEESGSLSSFYYSFNAGGIHFIMLGAYISYDKSGHQYKWLEKDL 355 (530)
Q Consensus 277 l-~~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~Ldt~~~~~~~~~Q~~WL~~~L 355 (530)
+ ...+|++.++||||+.. ...+...+..- ...+.+-.+++-|-+++.+-.-. +.....++.|+....
T Consensus 63 ~a~~G~~v~~i~GN~Dfll------~~~f~~~~g~~-----~l~~~~~~~~l~g~~~Ll~HGD~-f~t~~~~y~~~r~~~ 130 (237)
T COG2908 63 LARKGTRVYYIHGNHDFLL------GKRFAQEAGGM-----TLLPDPIVLDLYGKRILLAHGDT-FCTDDRAYQWFRYKV 130 (237)
T ss_pred HHhcCCeEEEecCchHHHH------HHHHHhhcCce-----EEcCcceeeeecCcEEEEEeCCc-ccchHHHHHHHHHHc
Confidence 4 45699999999999741 12222333100 01122333444445555553311 223445555554432
Q ss_pred hcccCCCCCEEE-EEeCCCCc-----------cC--CCCCCch----hHHHHHHHHHHHHHcCCcEEEEccccCceeeee
Q 009637 356 ANVDRSVTPWLV-ATWHPPWY-----------SS--YSSHYRE----AECMRVEMEALLYSYGVDIVFNGHVHAYERSNR 417 (530)
Q Consensus 356 ~~~~r~~~pwvI-v~~H~P~y-----------~s--~~~~~~~----~~~~r~~l~~ll~k~~VdlvlsGH~H~yeR~~p 417 (530)
.. +|+. ++.+.|.. .+ ....-.. .+.+.+...+.+++++||.+++||+|.-+-.
T Consensus 131 ~~------~~~~~lflnl~l~~R~ri~~k~r~~s~~~k~~~~~~~~i~d~~~~~v~~~~~~~~vd~vI~GH~Hr~ai~-- 202 (237)
T COG2908 131 HW------AWLQLLFLNLPLRVRRRIAYKIRSLSSWAKKKVKKAVNIMDVNPAAVADEARRHGVDGVIHGHTHRPAIH-- 202 (237)
T ss_pred cc------HHHHHHHHHhHHHHHHHHHHHHHHhhHHhHHhhhhHHHHHHhhHHHHHHHHHHcCCCEEEecCcccHhhc--
Confidence 22 1111 11122211 01 0000000 1223456778889999999999999986543
Q ss_pred cccCccCCCCcEEEEeCCCccccc
Q 009637 418 VFNYTLDPCGPVHITIGDGGNLEK 441 (530)
Q Consensus 418 v~~~~~~~~G~vyIv~G~gG~~e~ 441 (530)
+-.+..||+.|+.. .|+
T Consensus 203 ------~i~~~~yi~lGdW~-~~~ 219 (237)
T COG2908 203 ------NIPGITYINLGDWV-SEG 219 (237)
T ss_pred ------cCCCceEEecCcch-hcc
Confidence 23569999999987 443
No 69
>PRK04036 DNA polymerase II small subunit; Validated
Probab=98.18 E-value=2.6e-05 Score=85.32 Aligned_cols=202 Identities=16% Similarity=0.210 Sum_probs=102.6
Q ss_pred CCeEEEEEccCCCCCCh------HHHHHHHH---------hCCCCEEEEcCccccccccccCCCCCcccccCCCCCCccc
Q 009637 197 YPKRIAIVGDLGLTYNT------TCTINHMS---------SNEPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHE 261 (530)
Q Consensus 197 ~~~rf~v~gD~g~~~~~------~~~~~~l~---------~~~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~ 261 (530)
.+.++++++|+|.+... ...++.+. ..+++.++++||++...+... +.. .+.....
T Consensus 242 ~~~~i~~ISDlHlgs~~~~~~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd~~~~~p-~~~--------~~~~~~~ 312 (504)
T PRK04036 242 EKVYAVFISDVHVGSKEFLEDAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVDGIGIYP-GQE--------EELEIVD 312 (504)
T ss_pred CccEEEEEcccCCCCcchhHHHHHHHHHHHhCCCccchhhhhcCCEEEEeCcccccccCCc-cch--------hhccchh
Confidence 36899999999977531 22344444 457999999999995311000 000 0000001
Q ss_pred cchHHHHHHHHHHHHhhhcCCeEEccCCcccccccc--ccchHHHhhhcCCCCCCCCCCCcceEEEEcCcEEEEEEcccc
Q 009637 262 TYQPRWDYWGRFMQNLVSKVPIMVVEGNHEIEAQAG--NQTFVAYSSRFAFPSEESGSLSSFYYSFNAGGIHFIMLGAYI 339 (530)
Q Consensus 262 ~y~~~wd~~~~~l~~l~~~vP~~~v~GNHD~~~~~~--~~~f~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~Ldt~~ 339 (530)
.+ .+.+.+.++++.+...+|+++++||||...... ......|...+..+. -....+ -+.+++++.++++.-...
T Consensus 313 ~~-~~~~~l~~~L~~L~~~i~V~~ipGNHD~~~~~lPQ~~l~~~l~~~l~~~~--v~~lsN-P~~i~l~G~~iLl~HG~~ 388 (504)
T PRK04036 313 IY-EQYEAAAEYLKQIPEDIKIIISPGNHDAVRQAEPQPAFPEEIRSLFPEHN--VTFVSN-PALVNLHGVDVLIYHGRS 388 (504)
T ss_pred hH-HHHHHHHHHHHhhhcCCeEEEecCCCcchhhccCCCCccHHHHHhcCcCC--eEEecC-CeEEEECCEEEEEECCCC
Confidence 11 223456667777778899999999999753211 111122322221110 001112 235777888887765321
Q ss_pred --c---C---CCCHHHHHHHHHHHhcccCCCCCEEEEEeCCCCccCCCCCCchhHHHHHHHHHHHHHcCCcEEEEccccC
Q 009637 340 --S---Y---DKSGHQYKWLEKDLANVDRSVTPWLVATWHPPWYSSYSSHYREAECMRVEMEALLYSYGVDIVFNGHVHA 411 (530)
Q Consensus 340 --~---~---~~~~~Q~~WL~~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~k~~VdlvlsGH~H~ 411 (530)
+ + .....-.+.+++.|+.. .-.| ..-.+.|.|.... ++ | ++++ -.|++++||.|.
T Consensus 389 idDl~~~i~~~s~~~p~~~m~~~l~~r--HlaP--t~p~~~~~~p~~~-D~---------l--vi~~-~Pdv~~~GH~H~ 451 (504)
T PRK04036 389 IDDVISLIPGASYEKPGKAMEELLKRR--HLAP--IYGGRTPIAPEKE-DY---------L--VIDE-VPDIFHTGHVHI 451 (504)
T ss_pred HHHHHhhcccccccCHHHHHHHHHHhc--ccCC--CCCCCEEeCcCCC-CC---------E--EEec-CCCEEEeCCCCc
Confidence 0 1 01122345566655531 1111 0001122222111 00 0 1112 368999999999
Q ss_pred ceeeeecccCccCCCCcEEEEeCCC
Q 009637 412 YERSNRVFNYTLDPCGPVHITIGDG 436 (530)
Q Consensus 412 yeR~~pv~~~~~~~~G~vyIv~G~g 436 (530)
+.... -.|+.+|.+|+-
T Consensus 452 ~~~~~--------~~g~~~IN~gsf 468 (504)
T PRK04036 452 NGYGK--------YRGVLLINSGTW 468 (504)
T ss_pred cceEE--------ECCEEEEECCcc
Confidence 76542 257888887764
No 70
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=98.15 E-value=4.1e-05 Score=77.61 Aligned_cols=157 Identities=18% Similarity=0.266 Sum_probs=81.6
Q ss_pred HHHHHHhCCCC-EEEEcCccccccccccCCCCCcccccCCCCCCccccchHHHHHHHHHHHHhhhcCCeEEccCCccccc
Q 009637 216 TINHMSSNEPD-LVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQPRWDYWGRFMQNLVSKVPIMVVEGNHEIEA 294 (530)
Q Consensus 216 ~~~~l~~~~pD-fvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~~~wd~~~~~l~~l~~~vP~~~v~GNHD~~~ 294 (530)
.++++.+.+++ +++.+||+....... .. .+.....+.|+.+ ..- +.++||||+..
T Consensus 40 ~v~~~r~~~~~~l~ld~GD~~~gs~~~-------------------~~--~~g~~~~~~ln~~--g~D-~~~lGNHefd~ 95 (281)
T cd07409 40 LVKELRAENPNVLFLNAGDAFQGTLWY-------------------TL--YKGNADAEFMNLL--GYD-AMTLGNHEFDD 95 (281)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCcchh-------------------hh--cCChHHHHHHHhc--CCC-EEEeccccccC
Confidence 45556556677 566699998532110 00 0112223444443 344 44679999863
Q ss_pred cccccchHHHhhhcCCCCCCC-----C------CCCcceEEEEcCcEEE--EEEcccccC---C--C---CHHHHHHHHH
Q 009637 295 QAGNQTFVAYSSRFAFPSEES-----G------SLSSFYYSFNAGGIHF--IMLGAYISY---D--K---SGHQYKWLEK 353 (530)
Q Consensus 295 ~~~~~~f~~y~~~f~~P~~~~-----~------~~~~~yYsf~~G~v~f--I~Ldt~~~~---~--~---~~~Q~~WL~~ 353 (530)
+...+..+.....+|.-.. . .....|.-++.+++++ |.+-+.... . . -.+..+.+++
T Consensus 96 --G~~~l~~~~~~~~~p~l~aNv~~~~~~~~~~~~~~p~~i~~~~G~kIgviG~~~~~~~~~~~~~~~~~~~d~~~~~~~ 173 (281)
T cd07409 96 --GVEGLAPFLNNLKFPVLSANIDTSNEPPLLDGLLKPSTILTVGGEKIGIIGYTTPDTTELSSPGGKVKFLDEIEAAQK 173 (281)
T ss_pred --CHHHHHHHHHhCCCCEEEEeeecCCCccccccccCCeEEEEECCEEEEEEEEecCcccccccCCCceEECCHHHHHHH
Confidence 2233444444443332110 0 1123466678888554 544332110 0 0 1233455666
Q ss_pred HHhcccCCCCCEEEEEeCCCCccCCCCCCchhHHHHHHHHHHHHH-cCCcEEEEccccCce
Q 009637 354 DLANVDRSVTPWLVATWHPPWYSSYSSHYREAECMRVEMEALLYS-YGVDIVFNGHVHAYE 413 (530)
Q Consensus 354 ~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~k-~~VdlvlsGH~H~ye 413 (530)
.+++....+...+|++.|-.... . . .+.++ .+||++++||.|...
T Consensus 174 ~v~~lr~~~~D~II~l~H~G~~~--------d----~---~la~~~~giD~IiggH~H~~~ 219 (281)
T cd07409 174 EADKLKAQGVNKIIALSHSGYEV--------D----K---EIARKVPGVDVIVGGHSHTFL 219 (281)
T ss_pred HHHHHHhcCCCEEEEEeccCchh--------H----H---HHHHcCCCCcEEEeCCcCccc
Confidence 66665444567799999976421 1 1 22223 489999999999864
No 71
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.02 E-value=0.00016 Score=86.90 Aligned_cols=184 Identities=18% Similarity=0.215 Sum_probs=95.2
Q ss_pred CCeEEEEEccCCCCC-Ch---HHHHHHHHhCCCCEEEE-cCccccccccccCCCCCcccccCCCCCCccccchHHHHHHH
Q 009637 197 YPKRIAIVGDLGLTY-NT---TCTINHMSSNEPDLVLL-VGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQPRWDYWG 271 (530)
Q Consensus 197 ~~~rf~v~gD~g~~~-~~---~~~~~~l~~~~pDfvl~-~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~~~wd~~~ 271 (530)
..++|++++|+|... .. ...++++.+.+|+.+++ +||++..... .. ..++....
T Consensus 659 ~~l~Il~~nD~Hg~l~g~~r~~~~i~~~r~~~~~~l~ld~GD~~~gs~~-------------------~~--~~~g~~~~ 717 (1163)
T PRK09419 659 WELTILHTNDFHGHLDGAAKRVTKIKEVKEENPNTILVDAGDVYQGSLY-------------------SN--LLKGLPVL 717 (1163)
T ss_pred eEEEEEEEeecccCCCCHHHHHHHHHHHHhhCCCeEEEecCCCCCCcch-------------------hh--hcCChHHH
Confidence 469999999999653 22 33466666678887766 9999843210 00 00112233
Q ss_pred HHHHHhhhcCCeEEccCCccccccccccchHHHhhhcC------------CCC---C----CCCC---CCcceEEEEcCc
Q 009637 272 RFMQNLVSKVPIMVVEGNHEIEAQAGNQTFVAYSSRFA------------FPS---E----ESGS---LSSFYYSFNAGG 329 (530)
Q Consensus 272 ~~l~~l~~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~------------~P~---~----~~~~---~~~~yYsf~~G~ 329 (530)
+.|+.+ -.-+.++||||+... ...+..+..... +|- | ..+. ....|.-++.++
T Consensus 718 ~~ln~l---g~d~~~~GNHEfd~g--~~~l~~~l~~~~~~~~~~~~~~~~fp~l~aNv~~~~~~~~~~~~~py~I~e~~G 792 (1163)
T PRK09419 718 KMMKEM---GYDASTFGNHEFDWG--PDVLPDWLKGGGDPKNRHQFEKPDFPFVASNIYVKKTGKLVSWAKPYILVEVNG 792 (1163)
T ss_pred HHHhCc---CCCEEEecccccccC--hHHHHHHHHhcccccccccccCCCCCEEEEEEEeCCCCccccccCCEEEEEECC
Confidence 344432 233569999998632 222333322211 111 0 0111 112466678887
Q ss_pred EE--EEEEcccc-cC----C-----CCHHHHHHHHHHHhccc-CCCCCEEEEEeCCCCccCCCCCCchhHHHHHHHHHHH
Q 009637 330 IH--FIMLGAYI-SY----D-----KSGHQYKWLEKDLANVD-RSVTPWLVATWHPPWYSSYSSHYREAECMRVEMEALL 396 (530)
Q Consensus 330 v~--fI~Ldt~~-~~----~-----~~~~Q~~WL~~~L~~~~-r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll 396 (530)
++ ||.+-+.. .. . .-.+..+.+++..++.. ..+...+|++.|......... .+ ....+|.
T Consensus 793 ~kIgiiGltt~~~~~~~~p~~~~~l~f~d~~e~~~~~v~~Lr~~~~~D~VV~LsH~G~~~d~~~--~~-----~~~~~lA 865 (1163)
T PRK09419 793 KKVGFIGLTTPETAYKTSPGNVKNLEFKDPAEAAKKWVKELKEKEKVDAIIALTHLGSNQDRTT--GE-----ITGLELA 865 (1163)
T ss_pred EEEEEEEecccccccccCCCCcCCcEEcCHHHHHHHHHHHHHhhcCCCEEEEEecCCccccccc--cc-----cHHHHHH
Confidence 55 45554321 00 0 01123334444444433 245677999999886532111 11 1123344
Q ss_pred HHc-CCcEEEEccccCce
Q 009637 397 YSY-GVDIVFNGHVHAYE 413 (530)
Q Consensus 397 ~k~-~VdlvlsGH~H~ye 413 (530)
++. +||++|.||.|...
T Consensus 866 ~~v~gIDvIigGHsH~~~ 883 (1163)
T PRK09419 866 KKVKGVDAIISAHTHTLV 883 (1163)
T ss_pred HhCCCCCEEEeCCCCccc
Confidence 443 79999999999754
No 72
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.02 E-value=1.7e-05 Score=79.09 Aligned_cols=73 Identities=26% Similarity=0.439 Sum_probs=48.9
Q ss_pred eEEEEEccCCCCCCh-------------HHHHHHHHhCCCCEEEEcCccccccccccCCCCCcccccCCCCCCccccchH
Q 009637 199 KRIAIVGDLGLTYNT-------------TCTINHMSSNEPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQP 265 (530)
Q Consensus 199 ~rf~v~gD~g~~~~~-------------~~~~~~l~~~~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~~ 265 (530)
+||++++|+|.+... ...++.+.+.++|+|+++||+.... . + . ..
T Consensus 1 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~lli~GDi~d~~------~------------p--~--~~ 58 (253)
T TIGR00619 1 MRILHTSDWHLGKTLEGVSRLAEQKAFLDDLLEFAKAEQIDALLVAGDVFDTA------N------------P--P--AE 58 (253)
T ss_pred CEEEEEhhhcCCCccCCCChHHHHHHHHHHHHHHHHHcCCCEEEECCccCCCC------C------------C--C--HH
Confidence 589999999986421 1234444567999999999999521 1 0 0 11
Q ss_pred HHHHHHHHHHHhhh-c-CCeEEccCCcccc
Q 009637 266 RWDYWGRFMQNLVS-K-VPIMVVEGNHEIE 293 (530)
Q Consensus 266 ~wd~~~~~l~~l~~-~-vP~~~v~GNHD~~ 293 (530)
....+.+.++.+.. . +|+++++||||..
T Consensus 59 ~~~~~~~~l~~l~~~~~i~v~~i~GNHD~~ 88 (253)
T TIGR00619 59 AQELFNAFFRNLSDANPIPIVVISGNHDSA 88 (253)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEccCCCCh
Confidence 22344556666643 3 8999999999985
No 73
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=98.01 E-value=0.00012 Score=72.48 Aligned_cols=197 Identities=16% Similarity=0.196 Sum_probs=96.7
Q ss_pred EEEccCCCCCCh--H----HHHHHHHhC-----CCCEEEEcCccccccccccCCCCCcccccCCCCCCccccchHHHHHH
Q 009637 202 AIVGDLGLTYNT--T----CTINHMSSN-----EPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQPRWDYW 270 (530)
Q Consensus 202 ~v~gD~g~~~~~--~----~~~~~l~~~-----~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~~~wd~~ 270 (530)
++++|+|.+... . ..++.+... ++|.++++||++...... .+... .+ ..+.....+..+
T Consensus 2 ~~iSDlHl~~~~~~~~~~~~l~~~l~~~~~~~~~~d~lvi~GDl~d~~~~~-~~~~~-~~--------~~~~~~~~~~~~ 71 (243)
T cd07386 2 VFISDVHVGSKTFLEDAFEKFVRWLNGEDDSASRVKYLIIAGDLVDGIGVY-PGQEE-EL--------EILDIYEQYEEA 71 (243)
T ss_pred EEecccCCCchhhhHHHHHHHHHHHcCCcccccCccEEEEeCCcccccccC-Ccchh-hh--------hhhhHHHHHHHH
Confidence 689999976432 1 223333333 569999999999531000 00000 00 000112235566
Q ss_pred HHHHHHhhhcCCeEEccCCccccccc--cccchHHHhhhcCCCCCCCCCCCcceEEEEcCcEEEEEEccc--cc---C--
Q 009637 271 GRFMQNLVSKVPIMVVEGNHEIEAQA--GNQTFVAYSSRFAFPSEESGSLSSFYYSFNAGGIHFIMLGAY--IS---Y-- 341 (530)
Q Consensus 271 ~~~l~~l~~~vP~~~v~GNHD~~~~~--~~~~f~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~Ldt~--~~---~-- 341 (530)
.+.++.+...+|+++++||||..... .......+...+. +.+ -....+. +.+.+++.+|+..... .+ +
T Consensus 72 ~~~l~~L~~~~~v~~ipGNHD~~~~~~pq~~l~~~l~~~~~-~~~-v~~l~Np-~~~~~~g~~i~~~~G~~~~d~~~~~~ 148 (243)
T cd07386 72 AEYLSDVPSHIKIIIIPGNHDAVRQAEPQPALPEEIRKLFL-PGN-VEFVSNP-ALVKIHGVDVLIYHGRSIDDVVKLIP 148 (243)
T ss_pred HHHHHhcccCCeEEEeCCCCCcccccCCCCCccHHHHhhcC-CCc-eEEeCCC-CEEEECCEEEEEECCCCHHHHHHhCC
Confidence 77788887889999999999985321 1111223333221 100 0011122 2577888887764321 00 0
Q ss_pred -CCCHHHHHHHHHHHhcccCCCCCEEEEEeCCCCccCCCCCCchhHHHHHHHHHHHHHcCCcEEEEccccCceeeeeccc
Q 009637 342 -DKSGHQYKWLEKDLANVDRSVTPWLVATWHPPWYSSYSSHYREAECMRVEMEALLYSYGVDIVFNGHVHAYERSNRVFN 420 (530)
Q Consensus 342 -~~~~~Q~~WL~~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~k~~VdlvlsGH~H~yeR~~pv~~ 420 (530)
.....-.++++..|.... -.|. .-.-.|.+... .++ +..+...+++|+||.|.+....
T Consensus 149 ~~~~~~~~~~~~~~l~~~h--l~P~--~~~~~~~~~~~-~~~------------~~~~~~p~vii~Gh~h~~~~~~---- 207 (243)
T cd07386 149 GLSYDKPGKAMEELLKRRH--LAPI--YGGRTPIAPEP-EDY------------LVIDEVPDILHTGHVHVYGVGV---- 207 (243)
T ss_pred CCCcccHHHHHHHHHhhcc--cCCC--CCCCEeeCCCC-CCC------------EEecCCCCEEEECCCCchHhEE----
Confidence 112223455666555421 1110 00001111100 000 1112367899999999977653
Q ss_pred CccCCCCcEEEEeCCC
Q 009637 421 YTLDPCGPVHITIGDG 436 (530)
Q Consensus 421 ~~~~~~G~vyIv~G~g 436 (530)
-+|+.+|..|+-
T Consensus 208 ----~~~~~~vn~Gsf 219 (243)
T cd07386 208 ----YRGVLLVNSGTW 219 (243)
T ss_pred ----ECCEEEEECCCC
Confidence 257888877763
No 74
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=97.94 E-value=1.7e-05 Score=76.61 Aligned_cols=37 Identities=24% Similarity=0.344 Sum_probs=25.1
Q ss_pred EEEEEccCCCCCCh-HHHHHHHHh-CCCCEEEEcCcccc
Q 009637 200 RIAIVGDLGLTYNT-TCTINHMSS-NEPDLVLLVGDVTY 236 (530)
Q Consensus 200 rf~v~gD~g~~~~~-~~~~~~l~~-~~pDfvl~~GDl~Y 236 (530)
||+++||+|..... ..+++.+.. .++|.++++||+++
T Consensus 2 ri~~isDiHg~~~~l~~~l~~~~~~~~~d~~~~~GD~v~ 40 (207)
T cd07424 2 RDFVVGDIHGHYSLLQKALDAVGFDPARDRLISVGDLID 40 (207)
T ss_pred CEEEEECCCCCHHHHHHHHHHcCCCCCCCEEEEeCCccc
Confidence 78999999965322 222333322 36899999999995
No 75
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=97.92 E-value=0.00026 Score=71.86 Aligned_cols=188 Identities=19% Similarity=0.152 Sum_probs=88.5
Q ss_pred eEEEEEccCCCCCC-----------hHHHHHHHHhC----C-CCEEEEcCccccccccccCCCCCcccccCCCCCCcccc
Q 009637 199 KRIAIVGDLGLTYN-----------TTCTINHMSSN----E-PDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHET 262 (530)
Q Consensus 199 ~rf~v~gD~g~~~~-----------~~~~~~~l~~~----~-pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~ 262 (530)
++|++.+|+|.... ....++++.+. + .-+++.+||+... +. ....
T Consensus 1 ltIl~tnD~Hg~l~~~~~~~gG~ar~a~~i~~~r~~~~~~~~~~l~ld~GD~~~G-------s~------------~~~~ 61 (285)
T cd07405 1 ITILHTNDHHGHFWPNGTGEYGLAAQKTLVDGVRREVAAQGGYVLLLSGGDINTG-------VP------------ESDL 61 (285)
T ss_pred CEEEEEcccccccccCCCCCccHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCC-------ch------------hHHh
Confidence 47889999986421 12345555432 3 3588999999842 21 0000
Q ss_pred chHHHHHHHHHHHHhhhcCCeEEccCCccccccccccchHHHhhhcCCCC--C----CCC-CCCcceEEEEcCcEEE--E
Q 009637 263 YQPRWDYWGRFMQNLVSKVPIMVVEGNHEIEAQAGNQTFVAYSSRFAFPS--E----ESG-SLSSFYYSFNAGGIHF--I 333 (530)
Q Consensus 263 y~~~wd~~~~~l~~l~~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~--~----~~~-~~~~~yYsf~~G~v~f--I 333 (530)
+ +.....+.|+.+ ..- ..++||||+... ...+........+|- . ..+ .....|.-++.+++++ |
T Consensus 62 ~--~g~~~~~~~n~~--g~D-a~~~GNHEfD~G--~~~L~~~~~~~~fp~l~aNv~~~~g~~~~~p~~i~~~~G~kIgvi 134 (285)
T cd07405 62 Q--DAEPDFRGMNLV--GYD-AMAVGNHEFDNP--LEVLRQQMKWANFPLLSANIYQESGERLFKPYALFDLGGLKIAVI 134 (285)
T ss_pred c--CcchHHHHHHhh--CCc-EEeecccccccC--HHHHHHHHhhCCCCEEEEEEEecCCCCccCCeEEEEECCEEEEEE
Confidence 0 011122344443 333 346699999632 222333333222222 1 001 1123466677887664 4
Q ss_pred EEcccc-cC--CC-------CHHHHHHHHHHHhcccCCCCCEEEEEeCCCCccCCCCCCchhHHHHHHHHHHHHHcCCcE
Q 009637 334 MLGAYI-SY--DK-------SGHQYKWLEKDLANVDRSVTPWLVATWHPPWYSSYSSHYREAECMRVEMEALLYSYGVDI 403 (530)
Q Consensus 334 ~Ldt~~-~~--~~-------~~~Q~~WL~~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~k~~Vdl 403 (530)
.+-+.. .. .. -.+.++=+++.+++.+..+...+|++.|-............. ....+.+.+...+||+
T Consensus 135 G~t~~~~~~~~~~~~~~~~~f~d~~~~~~~~v~~lk~~~~D~VI~lsH~G~~~~~~~~~~~~--~~~~lA~~~~~~giD~ 212 (285)
T cd07405 135 GLTTDDTAKIGNPAYFEGIEFRPPIHEAKEVVPELKQEKPDIVIAATHMGHYDNGEHGSNAP--GDVEMARALPAGGLDL 212 (285)
T ss_pred EecccccccccCcCCcCCcEEcCHHHHHHHHHHHHHHcCCCEEEEEecccccCCccccccCc--hHHHHHHhcCCCCCCE
Confidence 443321 00 00 011222233333322223566799999988753221100000 0112222222358999
Q ss_pred EEEccccCcee
Q 009637 404 VFNGHVHAYER 414 (530)
Q Consensus 404 vlsGH~H~yeR 414 (530)
+|.||.|....
T Consensus 213 IigGHsH~~~~ 223 (285)
T cd07405 213 IVGGHSQDPVC 223 (285)
T ss_pred EEeCCCCcccc
Confidence 99999998553
No 76
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=97.91 E-value=0.00011 Score=76.89 Aligned_cols=113 Identities=18% Similarity=0.307 Sum_probs=70.6
Q ss_pred CeEEEEEccCCCCCCh------------------HHHHHHHH-hCCCCEEEEcCccccccccccCCCCCcccccCCCCCC
Q 009637 198 PKRIAIVGDLGLTYNT------------------TCTINHMS-SNEPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTP 258 (530)
Q Consensus 198 ~~rf~v~gD~g~~~~~------------------~~~~~~l~-~~~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~ 258 (530)
++|++.++|.|.-.+. ...+..+. ..+||.++++||+.+ .|...+
T Consensus 48 ~~ki~~vaDPQilg~~~~~~~~~~Ldk~~~D~~lrr~f~~~~~~lkPdvvffLGDLfD------eG~~~~---------- 111 (410)
T KOG3662|consen 48 STKILLVADPQILGNWPKKFLVSWLDKYGNDWYLRRSFDMSQWRLKPDVVFFLGDLFD------EGQWAG---------- 111 (410)
T ss_pred ceEEEEecCchhcCCCCCccccchHHhhhhHHHHHHHHHHHHhccCCCEEEEeccccc------cCccCC----------
Confidence 7999999999875421 11122221 259999999999995 233211
Q ss_pred ccccchHHHHHHHHHHHHh---hhcCCeEEccCCccccccccc--cchHHHhhhcCCCCCCCCCCCcceEEEEcCcEEEE
Q 009637 259 IHETYQPRWDYWGRFMQNL---VSKVPIMVVEGNHEIEAQAGN--QTFVAYSSRFAFPSEESGSLSSFYYSFNAGGIHFI 333 (530)
Q Consensus 259 ~~~~y~~~wd~~~~~l~~l---~~~vP~~~v~GNHD~~~~~~~--~~f~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI 333 (530)
.++|.+..+-++.+ ...+|.+.++||||++..... ..-..|.+.| ++...+|+.|+..|+
T Consensus 112 -----~eEf~~~~~RfkkIf~~k~~~~~~~i~GNhDIGf~~~~~~~~i~Rfe~~f----------g~~~r~f~v~~~tf~ 176 (410)
T KOG3662|consen 112 -----DEEFKKRYERFKKIFGRKGNIKVIYIAGNHDIGFGNELIPEWIDRFESVF----------GPTERRFDVGNLTFV 176 (410)
T ss_pred -----hHHHHHHHHHHHHhhCCCCCCeeEEeCCccccccccccchhHHHHHHHhh----------cchhhhhccCCceeE
Confidence 23454433334444 247999999999999743211 1123344444 235667999999999
Q ss_pred EEcccccC
Q 009637 334 MLGAYISY 341 (530)
Q Consensus 334 ~Ldt~~~~ 341 (530)
++|++...
T Consensus 177 ~~d~~~ls 184 (410)
T KOG3662|consen 177 MFDSNALS 184 (410)
T ss_pred Eeeehhhc
Confidence 99986543
No 77
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=97.89 E-value=9.3e-05 Score=69.08 Aligned_cols=41 Identities=22% Similarity=0.379 Sum_probs=27.6
Q ss_pred CCCEEEEcCccccccccccCCCCCcccccCCCCCCccccchHHHHHHHHHHHHhhhcCCeEEccCCcccc
Q 009637 224 EPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQPRWDYWGRFMQNLVSKVPIMVVEGNHEIE 293 (530)
Q Consensus 224 ~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~~~wd~~~~~l~~l~~~vP~~~v~GNHD~~ 293 (530)
++|.|+++||++.. +. .... .+.++.+ ..|++.++||||..
T Consensus 42 ~~d~vi~~GDl~~~------~~------------------~~~~---~~~l~~~--~~~~~~v~GNHD~~ 82 (168)
T cd07390 42 PDDTVYHLGDFSFG------GK------------------AGTE---LELLSRL--NGRKHLIKGNHDSS 82 (168)
T ss_pred CCCEEEEeCCCCCC------CC------------------hHHH---HHHHHhC--CCCeEEEeCCCCch
Confidence 68999999999942 21 0111 3334433 46899999999974
No 78
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=97.85 E-value=5.1e-05 Score=80.81 Aligned_cols=73 Identities=23% Similarity=0.403 Sum_probs=47.5
Q ss_pred eEEEEEccCCCCCCh-------------HHHHHHHHhCCCCEEEEcCccccccccccCCCCCcccccCCCCCCccccchH
Q 009637 199 KRIAIVGDLGLTYNT-------------TCTINHMSSNEPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQP 265 (530)
Q Consensus 199 ~rf~v~gD~g~~~~~-------------~~~~~~l~~~~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~~ 265 (530)
+||++++|+|.+... ..+++.+.+.+||+||++||+... +.. . ..
T Consensus 1 mkilh~SDlHlG~~~~~~~~~~~~~~~l~~l~~~i~~~~~D~viIaGDifD~------~~p--------------~--~~ 58 (407)
T PRK10966 1 MRILHTSDWHLGQNFYSKSRAAEHQAFLDWLLEQVQEHQVDAIIVAGDIFDT------GSP--------------P--SY 58 (407)
T ss_pred CEEEEEcccCCCCcccCcccHHHHHHHHHHHHHHHHhcCCCEEEECCccccC------CCC--------------c--HH
Confidence 589999999986321 123444556899999999999842 110 0 01
Q ss_pred HHHHHHHHHHHhh-hcCCeEEccCCcccc
Q 009637 266 RWDYWGRFMQNLV-SKVPIMVVEGNHEIE 293 (530)
Q Consensus 266 ~wd~~~~~l~~l~-~~vP~~~v~GNHD~~ 293 (530)
....+.+++..+. ..+|+++++||||..
T Consensus 59 a~~~~~~~l~~L~~~~~~v~~I~GNHD~~ 87 (407)
T PRK10966 59 ARELYNRFVVNLQQTGCQLVVLAGNHDSV 87 (407)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEcCCCCCh
Confidence 1123344455553 368999999999975
No 79
>PHA02546 47 endonuclease subunit; Provisional
Probab=97.79 E-value=6.3e-05 Score=78.33 Aligned_cols=74 Identities=18% Similarity=0.269 Sum_probs=46.7
Q ss_pred eEEEEEccCCCCCCh-------------HHHHHHHHhCCCCEEEEcCccccccccccCCCCCcccccCCCCCCccccchH
Q 009637 199 KRIAIVGDLGLTYNT-------------TCTINHMSSNEPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQP 265 (530)
Q Consensus 199 ~rf~v~gD~g~~~~~-------------~~~~~~l~~~~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~~ 265 (530)
+||+++||+|.+... ...++.+.+++||+|+++||+.... ... . ..
T Consensus 1 MKilhiSD~HLG~~~~~~~~~~~~~~~l~~ii~~a~~~~vD~VliaGDlfD~~----~~~-------------~----~~ 59 (340)
T PHA02546 1 MKILLIGDQHLGVRKDDPWFQNYQLKFIKQAIEYSKAHGITTWIQLGDTFDVR----KAI-------------T----QN 59 (340)
T ss_pred CeEEEEeeecCCCcCCChhhHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCC----CCC-------------C----HH
Confidence 589999999986321 2234444568999999999998421 000 0 11
Q ss_pred HHHHHHH-HHHHhh-hcCCeEEccCCcccc
Q 009637 266 RWDYWGR-FMQNLV-SKVPIMVVEGNHEIE 293 (530)
Q Consensus 266 ~wd~~~~-~l~~l~-~~vP~~~v~GNHD~~ 293 (530)
......+ +++.+. ..+|+++++||||..
T Consensus 60 ~~~~~~~~l~~~L~~~gi~v~~I~GNHD~~ 89 (340)
T PHA02546 60 TMNFVREKIFDLLKEAGITLHVLVGNHDMY 89 (340)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEccCCCcc
Confidence 1222222 234442 479999999999974
No 80
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=97.78 E-value=5.5e-05 Score=73.23 Aligned_cols=24 Identities=17% Similarity=0.272 Sum_probs=20.5
Q ss_pred HHHHHHHHcCCcEEEEccccCcee
Q 009637 391 EMEALLYSYGVDIVFNGHVHAYER 414 (530)
Q Consensus 391 ~l~~ll~k~~VdlvlsGH~H~yeR 414 (530)
.+..+|..++.++++.||+|....
T Consensus 158 ~~~~~l~~~~~~~iv~GHTh~~~~ 181 (208)
T cd07425 158 HLDKVLERLGAKRMVVGHTPQEGG 181 (208)
T ss_pred HHHHHHHHcCCCeEEEcCeeeecC
Confidence 577889999999999999997544
No 81
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=97.72 E-value=0.00082 Score=74.03 Aligned_cols=185 Identities=15% Similarity=0.137 Sum_probs=100.1
Q ss_pred CCeEEEEEccCCCCCC------------h----HHHHHHHHhC-CCCEEEEcCccccccccccCCCCCcccccCCCCCCc
Q 009637 197 YPKRIAIVGDLGLTYN------------T----TCTINHMSSN-EPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPI 259 (530)
Q Consensus 197 ~~~rf~v~gD~g~~~~------------~----~~~~~~l~~~-~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~ 259 (530)
..++|++.+|+|.... . ...++++.+. +..++|.+||+...+...+.
T Consensus 25 ~~l~ilhtnD~H~~l~~~~~~~~~~~~~g~~~~~~~v~~~ra~~~~~llld~GD~~~G~~l~~~---------------- 88 (517)
T COG0737 25 VKLTILHTNDLHGHLEPYDYDDDGDTDGGLARIATLVKQLRAENKNVLLLDAGDLIQGSPLSDY---------------- 88 (517)
T ss_pred eeEEEEEeccccccceeccccccCcccccHHHHHHHHHHHHhhcCCeEEEeCCcccCCcccccc----------------
Confidence 4799999999997532 1 1234444444 45689999999954211100
Q ss_pred cccchHHHHHHHHHHHHhhhcCCeEEccCCccccccccccchHHHhhhcCCCC---C---C---CCCCCcceEEEEcCcE
Q 009637 260 HETYQPRWDYWGRFMQNLVSKVPIMVVEGNHEIEAQAGNQTFVAYSSRFAFPS---E---E---SGSLSSFYYSFNAGGI 330 (530)
Q Consensus 260 ~~~y~~~wd~~~~~l~~l~~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~---~---~---~~~~~~~yYsf~~G~v 330 (530)
........+.|+.+ -.=..+.||||+... ...+..+.....+|- | . .....+-|.-++.+++
T Consensus 89 ----~~~g~~~~~~mN~m---~yDa~tiGNHEFd~g--~~~l~~~~~~~~fp~l~aNv~~~~~~~~~~~~Py~I~~~~g~ 159 (517)
T COG0737 89 ----LTKGEPTVDLLNAL---GYDAMTLGNHEFDYG--LEALARLLDEAKFPVLSANVYDKNSTGPPFFKPYAIKEVGGV 159 (517)
T ss_pred ----ccCCChHHHHHhhc---CCcEEeecccccccC--HHHHHHHHhccCCceEEeeeEecCCCCccCcCCeEEEecCCe
Confidence 01111223344433 122568899999632 233444555444441 0 1 1122356888899885
Q ss_pred E--EEEEccc-cc-C---C-----CCHHHHHHHHHHHhcccCCCCCEEEEEeCCCCccCCCCCCchhHHHHHHHHHHHHH
Q 009637 331 H--FIMLGAY-IS-Y---D-----KSGHQYKWLEKDLANVDRSVTPWLVATWHPPWYSSYSSHYREAECMRVEMEALLYS 398 (530)
Q Consensus 331 ~--fI~Ldt~-~~-~---~-----~~~~Q~~WL~~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~k 398 (530)
+ +|.+.+. .. + . .-....+++++.+.+.+.+...-+|++.|-+............. ......
T Consensus 160 KIgiIG~~~~~~~~~~~~~~~~~~~f~d~~e~~~~~i~elk~~~vD~iI~LsH~G~~~d~~~~~~~~~-~~~~~~----- 233 (517)
T COG0737 160 KIGIIGLTTPTIPTWEKPNAIEGVTFRDPIEAAKKYIPELKGEGVDVIIALSHLGIEDDLELASEVPG-DVDVAV----- 233 (517)
T ss_pred EEEEEEecCCcccccccccccCCcEEcCHHHHHHHHHHHHHhcCCCEEEEEeccCcCccccccccccc-cccccc-----
Confidence 5 4555531 11 1 1 12345677777777665443667999999987643221111000 000000
Q ss_pred cCCcEEEEccccCc
Q 009637 399 YGVDIVFNGHVHAY 412 (530)
Q Consensus 399 ~~VdlvlsGH~H~y 412 (530)
.++|+++.||.|.+
T Consensus 234 ~~iD~i~~GH~H~~ 247 (517)
T COG0737 234 PGIDLIIGGHSHTV 247 (517)
T ss_pred cCcceEeccCCccc
Confidence 44999999999964
No 82
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=97.72 E-value=4.2e-05 Score=74.61 Aligned_cols=37 Identities=27% Similarity=0.405 Sum_probs=27.2
Q ss_pred EEEEEccCCCCCCh-HHHHHHHHhC-CCCEEEEcCcccc
Q 009637 200 RIAIVGDLGLTYNT-TCTINHMSSN-EPDLVLLVGDVTY 236 (530)
Q Consensus 200 rf~v~gD~g~~~~~-~~~~~~l~~~-~pDfvl~~GDl~Y 236 (530)
|++++||+|..... .++++++... +.|-++++||++.
T Consensus 18 ri~vigDIHG~~~~L~~lL~~i~~~~~~D~li~lGDlvD 56 (218)
T PRK11439 18 HIWLVGDIHGCFEQLMRKLRHCRFDPWRDLLISVGDLID 56 (218)
T ss_pred eEEEEEcccCCHHHHHHHHHhcCCCcccCEEEEcCcccC
Confidence 89999999986432 3345554333 6789999999995
No 83
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=97.60 E-value=0.0013 Score=73.05 Aligned_cols=114 Identities=15% Similarity=0.173 Sum_probs=58.3
Q ss_pred eEEccCCccccccccccchHHHhhhcCCCCCC------CC----CCCcceEEEEcCc--EEEEEEccccc-C---CCC--
Q 009637 283 IMVVEGNHEIEAQAGNQTFVAYSSRFAFPSEE------SG----SLSSFYYSFNAGG--IHFIMLGAYIS-Y---DKS-- 344 (530)
Q Consensus 283 ~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~~------~~----~~~~~yYsf~~G~--v~fI~Ldt~~~-~---~~~-- 344 (530)
=..++||||+.. +...+..+.....+|--. .. ..-..|.-++.++ |-||.|.+... . .+.
T Consensus 84 Da~~lGNHEFd~--G~~~l~~~~~~~~fp~l~aNv~~~~~~~~~~~~~p~~i~~~~g~kIgiiGl~~~~~~~~~~~~~~~ 161 (550)
T TIGR01530 84 DFFTLGNHEFDA--GNEGLKEFLEPLEIPVLSANVIPDAASILHGKWKPSAIFERAGEKIAIIGLDTVKKTVESSSPGKD 161 (550)
T ss_pred CEEEeccccccC--CHHHHHHHHHhCCCCEEEEeeecCCCcccccCcCceEEEEECCeEEEEEEeecCcccccccCCCCc
Confidence 367899999863 233344444443333210 00 1123466678887 55677754211 0 110
Q ss_pred ---HHHHHHHHHHHhcccCCCCCEEEEEeCCCCccCCCCCCchhHHHHHHHHHHHHHc-CCcEEEEccccCce
Q 009637 345 ---GHQYKWLEKDLANVDRSVTPWLVATWHPPWYSSYSSHYREAECMRVEMEALLYSY-GVDIVFNGHVHAYE 413 (530)
Q Consensus 345 ---~~Q~~WL~~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~k~-~VdlvlsGH~H~ye 413 (530)
...++=+++..++..+.+..-+|++.|.-.. .. ..+.++. +||++|+||.|.+-
T Consensus 162 ~~f~d~~~~~~~~v~~Lk~~g~D~II~lsH~g~~--------~d-------~~la~~~~~iD~IigGHsH~~~ 219 (550)
T TIGR01530 162 IKFIDEIAAAQIAANALKQQGINKIILLSHAGFE--------KN-------CEIAQKINDIDVIVSGDSHYLL 219 (550)
T ss_pred eEECCHHHHHHHHHHHHHhCCCCEEEEEecCCcH--------HH-------HHHHhcCCCCCEEEeCCCCccc
Confidence 1112223333322222346679999997531 11 1233332 79999999999864
No 84
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=97.57 E-value=0.0012 Score=73.44 Aligned_cols=186 Identities=17% Similarity=0.152 Sum_probs=89.8
Q ss_pred CCeEEEEEccCCCCCC--------h---HHHHHHHHh-----CCCCEEEEcCccccccccccCCCCCcccccCCCCCCcc
Q 009637 197 YPKRIAIVGDLGLTYN--------T---TCTINHMSS-----NEPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIH 260 (530)
Q Consensus 197 ~~~rf~v~gD~g~~~~--------~---~~~~~~l~~-----~~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~ 260 (530)
..++|++++|+|.... . ...++++.+ ...-++|.+||+...... .
T Consensus 33 ~~ltil~tnD~Hg~~~~~~~~~~G~a~~a~~i~~~r~~~~~~~~~~l~ldaGD~~~Gs~~-------------------s 93 (551)
T PRK09558 33 YKITILHTNDHHGHFWRNEYGEYGLAAQKTLVDQIRKEVAAEGGSVLLLSGGDINTGVPE-------------------S 93 (551)
T ss_pred eEEEEEEecccCCCccccccCCccHHHHHHHHHHHHHHhhccCCCEEEEcCCccccceEh-------------------h
Confidence 4699999999997532 1 223444442 223578999999842110 0
Q ss_pred ccchHHHHHHHHHHHHhhhcCCeEEccCCccccccccccchHHHhhhcCCCCC-------CCC-CCCcceEEEEcCcEEE
Q 009637 261 ETYQPRWDYWGRFMQNLVSKVPIMVVEGNHEIEAQAGNQTFVAYSSRFAFPSE-------ESG-SLSSFYYSFNAGGIHF 332 (530)
Q Consensus 261 ~~y~~~wd~~~~~l~~l~~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~-------~~~-~~~~~yYsf~~G~v~f 332 (530)
..+. .....+.|+.+ ..- ..++||||+... ...+..+.....+|-- ..+ ..-..|.-++.+++++
T Consensus 94 ~~~~--g~~~i~~mN~~--g~D-a~tlGNHEFD~G--~~~L~~~~~~a~fp~l~aNv~~~~~g~~~~~py~i~~~~G~kI 166 (551)
T PRK09558 94 DLQD--AEPDFRGMNLI--GYD-AMAVGNHEFDNP--LSVLRKQEKWAKFPFLSANIYQKSTGERLFKPYAIFDRQGLKI 166 (551)
T ss_pred hhcC--CchhHHHHhcC--CCC-EEcccccccCcC--HHHHHHhhccCCCCEEEEEEEECCCCCcccCCeEEEEECCEEE
Confidence 0010 11123344433 233 456799998632 2233333333233321 001 1123466678888654
Q ss_pred --EEEccccc--C-CC-------CHHHHHHHHHHHhcccC-CCCCEEEEEeCCCCccCCCCCCchhHHHHHHHHHHHHHc
Q 009637 333 --IMLGAYIS--Y-DK-------SGHQYKWLEKDLANVDR-SVTPWLVATWHPPWYSSYSSHYREAECMRVEMEALLYSY 399 (530)
Q Consensus 333 --I~Ldt~~~--~-~~-------~~~Q~~WL~~~L~~~~r-~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~k~ 399 (530)
|.+-+... . .+ -.+..+-+++.+++... .+...+|++.|.......... .... .-..|.++.
T Consensus 167 giiG~~t~~~~~~~~~~~~~~~~f~d~~e~a~~~v~~Lk~~~~~D~IV~LsH~G~~~~~~~~-~~~~----~d~~la~~~ 241 (551)
T PRK09558 167 AVIGLTTEDTAKIGNPEYFTDIEFRDPAEEAKKVIPELKQTEKPDVIIALTHMGHYDDGEHG-SNAP----GDVEMARSL 241 (551)
T ss_pred EEEEEeccccccccCCCCcCCceECCHHHHHHHHHHHHHhccCCCEEEEEeccccccCCccC-CCCc----cHHHHHHhC
Confidence 44433211 0 00 01122223333333321 356779999998875321110 0000 002233333
Q ss_pred ---CCcEEEEccccCce
Q 009637 400 ---GVDIVFNGHVHAYE 413 (530)
Q Consensus 400 ---~VdlvlsGH~H~ye 413 (530)
+||++|.||.|..-
T Consensus 242 ~~~~IDvIlgGHsH~~~ 258 (551)
T PRK09558 242 PAGGLDMIVGGHSQDPV 258 (551)
T ss_pred CccCceEEEeCCCCccc
Confidence 79999999999753
No 85
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=97.52 E-value=0.0003 Score=64.39 Aligned_cols=50 Identities=14% Similarity=-0.088 Sum_probs=31.7
Q ss_pred EEEEeCCCCccCCCCC--C---chhHHHHHHHHHHHHHcCCcEEEEcccc-Cceee
Q 009637 366 LVATWHPPWYSSYSSH--Y---REAECMRVEMEALLYSYGVDIVFNGHVH-AYERS 415 (530)
Q Consensus 366 vIv~~H~P~y~s~~~~--~---~~~~~~r~~l~~ll~k~~VdlvlsGH~H-~yeR~ 415 (530)
-|++.|.|++...... . .....-...+.+++++.+....||||.| -|||-
T Consensus 71 DILlTh~wP~gi~~~~~~~~~~~~~~~GS~~i~~l~~~lkPrYhf~gh~~~fyer~ 126 (150)
T cd07380 71 DILLTSEWPKGISKLSKVPFEETLLICGSDLIAELAKKLKPRYHFAGLEGVFYERE 126 (150)
T ss_pred CEEECCCCchhhhhhCCCcccccccCCCCHHHHHHHHHcCCCeEeecCCCceEeec
Confidence 4777888776642110 0 0001123466778888999999999999 56663
No 86
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=97.39 E-value=0.0013 Score=66.68 Aligned_cols=182 Identities=21% Similarity=0.279 Sum_probs=102.9
Q ss_pred eEEEEEccCCCCCC-hHHHHHHHHhC---CCCEEEEcCccccccccccCCCCCcccccCCCCCCccccchHHHHHHHHH-
Q 009637 199 KRIAIVGDLGLTYN-TTCTINHMSSN---EPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQPRWDYWGRF- 273 (530)
Q Consensus 199 ~rf~v~gD~g~~~~-~~~~~~~l~~~---~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~~~wd~~~~~- 273 (530)
+||+|-|++|...+ .-.++..+.+. +.|++|++||+--- .|+....|. .+...|+..-+ |.+.
T Consensus 1 MrIaVqGCcHG~Ld~iYkti~~~ek~~~tkVDLLlccGDFQav----Rn~~D~~si-------avPpKy~~m~~-F~~YY 68 (456)
T KOG2863|consen 1 MRIAVQGCCHGELDNIYKTISLIEKRGNTKVDLLLCCGDFQAV----RNEQDLKSI-------AVPPKYRRMGD-FYKYY 68 (456)
T ss_pred CceeeecccchhHHHHHHHHHHHHHcCCCCccEEEEccchHhh----cchhhcccc-------cCCHHHHHHHH-HHHHh
Confidence 58999999997532 34556666654 89999999999522 233322221 12233432222 2222
Q ss_pred HHHhhhcCCeEEccCCccccccccccchHHHhhhcCCCCCCCCCCCcceEE-----EEcCcEEEEEEcc---cccCCC--
Q 009637 274 MQNLVSKVPIMVVEGNHEIEAQAGNQTFVAYSSRFAFPSEESGSLSSFYYS-----FNAGGIHFIMLGA---YISYDK-- 343 (530)
Q Consensus 274 l~~l~~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~~~~~~~~~yYs-----f~~G~v~fI~Ldt---~~~~~~-- 343 (530)
-.++.+.+|.+++-||||.. +|.. .+|..+- -..+.||- .++||||+-.|+. +.+|..
T Consensus 69 sge~~APVlTIFIGGNHEAs---------nyL~--eLpyGGw-VApNIyYlG~agVv~~~gvRIggiSGI~k~~dy~kgh 136 (456)
T KOG2863|consen 69 SGEIKAPVLTIFIGGNHEAS---------NYLQ--ELPYGGW-VAPNIYYLGYAGVVNFGGVRIGGISGIYKEHDYRKGH 136 (456)
T ss_pred CCcccCceeEEEecCchHHH---------HHHH--hcccCce-eccceEEeeecceEEECCEEEeeccchhhhhhcccCC
Confidence 23456788999999999984 3433 2343221 12356663 6789999999886 223321
Q ss_pred ---------------CHHHHHHHHHHHhcccCCCCCEEEEEeCCCCccCCCCCCchh-HHH----------------HHH
Q 009637 344 ---------------SGHQYKWLEKDLANVDRSVTPWLVATWHPPWYSSYSSHYREA-ECM----------------RVE 391 (530)
Q Consensus 344 ---------------~~~Q~~WL~~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~-~~~----------------r~~ 391 (530)
.-.+++ ...|++. +.|-=|.++|-=+-... +++.. ..+ ...
T Consensus 137 ~E~ppyn~stiRsiYHvR~~d--V~~Lkql---k~piDIfLSHDWP~GI~--~yGd~~~LLr~KPFFrqeie~~~LGSp~ 209 (456)
T KOG2863|consen 137 FEWPPYNNSTIRSIYHVRISD--VAKLKQL---KHPIDIFLSHDWPRGIY--YYGDKKQLLRLKPFFRQEIEEGKLGSPA 209 (456)
T ss_pred CCCCCccchhhhhhhhhhhhh--hHHHHhh---cCcceEEeecCCCcchh--hcCCHHHHHhcCcHHHHHHhcCCcCChH
Confidence 011111 1223332 23445777785322211 11111 111 247
Q ss_pred HHHHHHHcCCcEEEEccccC
Q 009637 392 MEALLYSYGVDIVFNGHVHA 411 (530)
Q Consensus 392 l~~ll~k~~VdlvlsGH~H~ 411 (530)
+++||++.+...+|+.|.|.
T Consensus 210 ~~eLL~~LkP~yWfsAHLH~ 229 (456)
T KOG2863|consen 210 LEELLEDLKPQYWFSAHLHV 229 (456)
T ss_pred HHHHHHHhCcchhhhhhHhh
Confidence 88999999999999999996
No 87
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=97.33 E-value=0.0043 Score=63.87 Aligned_cols=38 Identities=16% Similarity=0.105 Sum_probs=25.0
Q ss_pred eEEEEEccCCCCCC----h---HHHHHHHHhC----C-CCEEEEcCcccc
Q 009637 199 KRIAIVGDLGLTYN----T---TCTINHMSSN----E-PDLVLLVGDVTY 236 (530)
Q Consensus 199 ~rf~v~gD~g~~~~----~---~~~~~~l~~~----~-pDfvl~~GDl~Y 236 (530)
++|++.+|+|.... . ...++++.+. . ..++|.+||+..
T Consensus 1 l~IlhtnD~Hg~~~~~gg~ar~a~~i~~~r~~~~~~~~~~l~ldaGD~~q 50 (313)
T cd08162 1 LQLLHTSDGESGLLAEDDAPNFSALVNALKDEAAAEYDNTLTLSSGDNFI 50 (313)
T ss_pred CeEEEecccccCccccCCHHHHHHHHHHHHHhhhccCCCeEEEecCcccc
Confidence 47899999997632 1 2235555432 3 358899999984
No 88
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=97.29 E-value=0.00047 Score=64.58 Aligned_cols=52 Identities=19% Similarity=0.469 Sum_probs=33.1
Q ss_pred HHhCCCCEEEEcCccccccccccCCCCCcccccCCCCCCccccchHHHHHHHHHHHHhhhcCCeEEccCCcccc
Q 009637 220 MSSNEPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQPRWDYWGRFMQNLVSKVPIMVVEGNHEIE 293 (530)
Q Consensus 220 l~~~~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~~~wd~~~~~l~~l~~~vP~~~v~GNHD~~ 293 (530)
+.+.+||.++++||+++... +. . ...+.... .+......+|++.++||||..
T Consensus 37 ~~~~~~d~lii~GDl~~~~~----~~----------------~-~~~~~~~~-~~~~~~~~~~v~~i~GNHD~~ 88 (172)
T cd07391 37 IEEYGPERLIILGDLKHSFG----GL----------------S-RQEFEEVA-FLRLLAKDVDVILIRGNHDGG 88 (172)
T ss_pred HHhcCCCEEEEeCccccccc----cc----------------C-HHHHHHHH-HHHhccCCCeEEEEcccCccc
Confidence 34579999999999995311 10 0 11222222 333445688999999999974
No 89
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=97.18 E-value=0.0069 Score=54.86 Aligned_cols=38 Identities=24% Similarity=0.228 Sum_probs=25.0
Q ss_pred EEEEeCCCCccCCCCCCchhHHHHHHHHHHHHHcCCcEEEEccccC
Q 009637 366 LVATWHPPWYSSYSSHYREAECMRVEMEALLYSYGVDIVFNGHVHA 411 (530)
Q Consensus 366 vIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~k~~VdlvlsGH~H~ 411 (530)
.|+++|.|.-+.. +.+ ........+.++++.+.||.|+
T Consensus 110 ~~~LsHyP~~~~~--~~~------~~~r~~y~~~~~~llIHGH~H~ 147 (186)
T COG4186 110 DVYLSHYPRPGQD--HPG------MESRFDYLRLRVPLLIHGHLHS 147 (186)
T ss_pred EEEEEeCCCCCCC--Ccc------hhhhHHHHhccCCeEEeccccc
Confidence 6999999965432 111 1122234456899999999999
No 90
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.18 E-value=0.014 Score=67.09 Aligned_cols=60 Identities=17% Similarity=0.051 Sum_probs=33.3
Q ss_pred HHHHHHHhcccCCCCCEEEEEeCCCCccCCCCCCchhHHHHHHHHHHHHHcCCcEEEEccccCce
Q 009637 349 KWLEKDLANVDRSVTPWLVATWHPPWYSSYSSHYREAECMRVEMEALLYSYGVDIVFNGHVHAYE 413 (530)
Q Consensus 349 ~WL~~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~k~~VdlvlsGH~H~ye 413 (530)
+.+++...+.+......||++.|.-+.........++. -..|..--+||++|.||.|..-
T Consensus 296 eaa~~~v~~Lr~~GaDvIIaLsH~G~~~d~~~~~~En~-----~~~LA~v~GIDaIvgGHsH~~~ 355 (814)
T PRK11907 296 EAVRDIIPTMRAAGADIVLVLSHSGIGDDQYEVGEENV-----GYQIASLSGVDAVVTGHSHAEF 355 (814)
T ss_pred HHHHHHHHHHHhcCCCEEEEEeCCCcccccccccccch-----hhHHhcCCCCCEEEECCCCCcc
Confidence 34444444433345777999999876432111111111 1122222489999999999853
No 91
>PHA02239 putative protein phosphatase
Probab=97.08 E-value=0.0012 Score=65.03 Aligned_cols=70 Identities=17% Similarity=0.334 Sum_probs=42.6
Q ss_pred eEEEEEccCCCCCCh-HHHHHHHHhC--CCCEEEEcCccccccccccCCCCCcccccCCCCCCccccchHHHHHHHHHHH
Q 009637 199 KRIAIVGDLGLTYNT-TCTINHMSSN--EPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQPRWDYWGRFMQ 275 (530)
Q Consensus 199 ~rf~v~gD~g~~~~~-~~~~~~l~~~--~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~~~wd~~~~~l~ 275 (530)
+|++++||+|..... .+.++.+... ..|.++++||+++. |.. .. ..+...++
T Consensus 1 m~~~~IsDIHG~~~~l~~ll~~i~~~~~~~d~li~lGD~iDr------G~~------------------s~-~v~~~l~~ 55 (235)
T PHA02239 1 MAIYVVPDIHGEYQKLLTIMDKINNERKPEETIVFLGDYVDR------GKR------------------SK-DVVNYIFD 55 (235)
T ss_pred CeEEEEECCCCCHHHHHHHHHHHhhcCCCCCEEEEecCcCCC------CCC------------------hH-HHHHHHHH
Confidence 478999999965322 3344555332 35999999999952 320 00 11222233
Q ss_pred HhhhcCCeEEccCCcccc
Q 009637 276 NLVSKVPIMVVEGNHEIE 293 (530)
Q Consensus 276 ~l~~~vP~~~v~GNHD~~ 293 (530)
.+....++++++||||..
T Consensus 56 ~~~~~~~~~~l~GNHE~~ 73 (235)
T PHA02239 56 LMSNDDNVVTLLGNHDDE 73 (235)
T ss_pred HhhcCCCeEEEECCcHHH
Confidence 223346899999999974
No 92
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.05 E-value=0.011 Score=71.42 Aligned_cols=49 Identities=27% Similarity=0.228 Sum_probs=31.0
Q ss_pred CCCCEEEEEeCCCCccCCCCCCchhHHHHHHHHHHHHHc-CCcEEEEccccCcee
Q 009637 361 SVTPWLVATWHPPWYSSYSSHYREAECMRVEMEALLYSY-GVDIVFNGHVHAYER 414 (530)
Q Consensus 361 ~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~k~-~VdlvlsGH~H~yeR 414 (530)
.+...+|++.|...-........+ ....+|.++. +||++|.||.|....
T Consensus 233 ~gaDvII~l~H~G~~~~~~~~~~e-----n~~~~la~~~~gID~Il~GHsH~~~~ 282 (1163)
T PRK09419 233 GGADVIVALAHSGIESEYQSSGAE-----DSVYDLAEKTKGIDAIVAGHQHGLFP 282 (1163)
T ss_pred cCCCEEEEEeccCcCCCCCCCCcc-----hHHHHHHHhCCCCcEEEeCCCccccc
Confidence 456779999998865432111111 2233445443 799999999998643
No 93
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=96.86 E-value=0.0015 Score=65.91 Aligned_cols=67 Identities=24% Similarity=0.373 Sum_probs=42.8
Q ss_pred eEEEEEccCCCCCCh-HHHHHHHH-hCCCCEEEEcCccccccccccCCCCCcccccCCCCCCccccchHHHHHHHHHHHH
Q 009637 199 KRIAIVGDLGLTYNT-TCTINHMS-SNEPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQPRWDYWGRFMQN 276 (530)
Q Consensus 199 ~rf~v~gD~g~~~~~-~~~~~~l~-~~~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~~~wd~~~~~l~~ 276 (530)
++++++||+|..... ..+++++. +.+.|.++++||++.. |.. + ....+.+..
T Consensus 1 M~~~vIGDIHG~~~~l~~ll~~~~~~~~~D~li~lGDlVdr------Gp~------------------s--~~vl~~l~~ 54 (275)
T PRK00166 1 MATYAIGDIQGCYDELQRLLEKIDFDPAKDTLWLVGDLVNR------GPD------------------S--LEVLRFVKS 54 (275)
T ss_pred CcEEEEEccCCCHHHHHHHHHhcCCCCCCCEEEEeCCccCC------CcC------------------H--HHHHHHHHh
Confidence 468999999976433 23344443 2468999999999952 320 1 123333433
Q ss_pred hhhcCCeEEccCCcccc
Q 009637 277 LVSKVPIMVVEGNHEIE 293 (530)
Q Consensus 277 l~~~vP~~~v~GNHD~~ 293 (530)
+ ..++.++.||||..
T Consensus 55 l--~~~~~~VlGNHD~~ 69 (275)
T PRK00166 55 L--GDSAVTVLGNHDLH 69 (275)
T ss_pred c--CCCeEEEecChhHH
Confidence 3 34689999999974
No 94
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=96.83 E-value=0.0031 Score=61.78 Aligned_cols=70 Identities=17% Similarity=0.334 Sum_probs=46.3
Q ss_pred eEEEEEccCCCCCCh--------------HHHHHHHH----hCCCCEEEEcCccccccccccCCCCCcccccCCCCCCcc
Q 009637 199 KRIAIVGDLGLTYNT--------------TCTINHMS----SNEPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIH 260 (530)
Q Consensus 199 ~rf~v~gD~g~~~~~--------------~~~~~~l~----~~~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~ 260 (530)
-+.++++|+|.+... .++++++. +.+||.++++||+..... .
T Consensus 15 ~~~LvisDlHLG~~~~~~~~Gi~~P~~~~~~~l~rl~~li~~~~~d~vIi~GDl~h~~~-----~--------------- 74 (225)
T TIGR00024 15 GDKAVIADLHLGFERHLDEQGVMVPGFQFREIIERALSIADKYGIEALIINGDLKHEFK-----K--------------- 74 (225)
T ss_pred cCeEEEEeccCCCHHHHHhcCCcCChhHHHHHHHHHHHHHhhcCCCEEEEcCccccccC-----C---------------
Confidence 468899999987421 23455443 468999999999995311 0
Q ss_pred ccchHHHHHHHHHHHHhhhcCCeEEccCCcccc
Q 009637 261 ETYQPRWDYWGRFMQNLVSKVPIMVVEGNHEIE 293 (530)
Q Consensus 261 ~~y~~~wd~~~~~l~~l~~~vP~~~v~GNHD~~ 293 (530)
...|..+.++++.+ ..+++.++||||..
T Consensus 75 ---~~~~~~~~~~l~~~--~~~v~~V~GNHD~~ 102 (225)
T TIGR00024 75 ---GLEWRFIREFIEVT--FRDLILIRGNHDAL 102 (225)
T ss_pred ---hHHHHHHHHHHHhc--CCcEEEECCCCCCc
Confidence 02244445555554 35999999999963
No 95
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=96.82 E-value=0.04 Score=63.23 Aligned_cols=48 Identities=27% Similarity=0.162 Sum_probs=28.4
Q ss_pred CCCCEEEEEeCCCCccCCCCCCchhHHHHHHHHHHHHHc-CCcEEEEccccCcee
Q 009637 361 SVTPWLVATWHPPWYSSYSSHYREAECMRVEMEALLYSY-GVDIVFNGHVHAYER 414 (530)
Q Consensus 361 ~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~k~-~VdlvlsGH~H~yeR 414 (530)
.....||++.|...-.... .. .+..+-. .+.+. +||++|.||.|..-.
T Consensus 243 ~GaDvIIaLsH~G~~~d~~---~~--~~ena~~-~l~~v~gID~IlgGHsH~~~~ 291 (780)
T PRK09418 243 EGADVIVALAHSGVDKSGY---NV--GMENASY-YLTEVPGVDAVLMGHSHTEVK 291 (780)
T ss_pred cCCCEEEEEeccCcccccc---cc--cchhhhH-HHhcCCCCCEEEECCCCCccc
Confidence 4567799999987643211 10 0101111 13444 899999999998653
No 96
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=96.66 E-value=0.038 Score=55.16 Aligned_cols=191 Identities=15% Similarity=0.226 Sum_probs=95.6
Q ss_pred EEEEccCCCCCCh------HHHHHHHHh-----------CCCCEEEEcCccccccccccCCCCCcccccCCCCCCccccc
Q 009637 201 IAIVGDLGLTYNT------TCTINHMSS-----------NEPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETY 263 (530)
Q Consensus 201 f~v~gD~g~~~~~------~~~~~~l~~-----------~~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y 263 (530)
+++++|+|.+.+. +..++.|.- .+..-+|++||.+.......+......+ +........
T Consensus 2 i~~vSgL~ig~~~~~~~~l~ll~d~L~G~~g~~~~~~~~s~I~rlIIaGn~v~~~~~~~~~~~~~~~---~~~~~~~~~- 77 (257)
T cd07387 2 IALVSGLGLGGNAESSLSLQLLVDWLTGQLGDEEEQSSASSIVRLIIAGNSLSKSTQGKDSQTKARY---LTKKSSAAS- 77 (257)
T ss_pred EEEEcccccCCCccchHHHHHHHHHhcCCCCCccccccccceEEEEEECCcccccccccchhhhhhc---cccccchhh-
Confidence 7889999877553 112333321 1345799999999642110000000000 000000111
Q ss_pred hHHHHHHHHHHHHhhhcCCeEEccCCccccccccc-cch-HHHhhhcCCCCCCCCCCCcceEEEEcCcEEEEEEcccc--
Q 009637 264 QPRWDYWGRFMQNLVSKVPIMVVEGNHEIEAQAGN-QTF-VAYSSRFAFPSEESGSLSSFYYSFNAGGIHFIMLGAYI-- 339 (530)
Q Consensus 264 ~~~wd~~~~~l~~l~~~vP~~~v~GNHD~~~~~~~-~~f-~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~Ldt~~-- 339 (530)
..+.+.+..++..+.+.+|+.+.|||||-....-. ..+ ..+..+-....+ -...+| =|.|+++|++|++.....
T Consensus 78 ~~~~~~ld~~l~~l~~~i~V~imPG~~Dp~~~~lPQqplh~~lfp~s~~~~~-~~~vtN-P~~~~i~g~~vLgtsGqni~ 155 (257)
T cd07387 78 VEAVKELDNFLSQLASSVPVDLMPGEFDPANHSLPQQPLHRCLFPKSSNYST-LNLVTN-PYEFSIDGVRVLGTSGQNVD 155 (257)
T ss_pred HHHHHHHHHHHHhhhcCCeEEECCCCCCcccccCCCCCCCHHHhhcccccCC-cEEeCC-CeEEEECCEEEEEECCCCHH
Confidence 23456677888888899999999999998643211 111 111100000000 001122 246999999999988642
Q ss_pred ---cCCCCHHHHHHHHHHHhcccCCCCCEEEEEeCCCCccCCCCCC--chhHHHHHHHHHHHHHcCCcEEEEccccCcee
Q 009637 340 ---SYDKSGHQYKWLEKDLANVDRSVTPWLVATWHPPWYSSYSSHY--REAECMRVEMEALLYSYGVDIVFNGHVHAYER 414 (530)
Q Consensus 340 ---~~~~~~~Q~~WL~~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~--~~~~~~r~~l~~ll~k~~VdlvlsGH~H~yeR 414 (530)
.+...+.-++.|++.|+-- .-+ |.+...-..+ .+. .++.-+.-.+++|+||.|.|+.
T Consensus 156 Di~ky~~~~~~l~~me~~L~wr--Hla---------PTaPDTL~~yP~~~~-------Dpfvi~~~PhVyf~Gnq~~f~t 217 (257)
T cd07387 156 DILKYSSLESRLDILERTLKWR--HIA---------PTAPDTLWCYPFTDR-------DPFILEECPHVYFAGNQPKFGT 217 (257)
T ss_pred HHHHhCCCCCHHHHHHHHHHhc--ccC---------CCCCCccccccCCCC-------CceeecCCCCEEEeCCCcceee
Confidence 1233444567777777641 111 1111100000 000 0122233589999999999976
Q ss_pred e
Q 009637 415 S 415 (530)
Q Consensus 415 ~ 415 (530)
.
T Consensus 218 ~ 218 (257)
T cd07387 218 K 218 (257)
T ss_pred e
Confidence 4
No 97
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=96.59 E-value=0.042 Score=58.56 Aligned_cols=89 Identities=16% Similarity=0.316 Sum_probs=56.3
Q ss_pred CCeEEEEEccCCCCCCh------HHHHHHHHh-----CCCCEEEEcCccccccccccCCCCCcccccCCCCCCccccchH
Q 009637 197 YPKRIAIVGDLGLTYNT------TCTINHMSS-----NEPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQP 265 (530)
Q Consensus 197 ~~~rf~v~gD~g~~~~~------~~~~~~l~~-----~~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~~ 265 (530)
..+++++++|.|.+... ...++.+.- .+...++.+||++..=+. |...-.+-.+...| .
T Consensus 224 e~v~v~~isDih~GSk~F~~~~f~~fi~wl~g~~~~a~~vkyliiagd~VDGigi---------Ypgq~~eL~i~di~-~ 293 (481)
T COG1311 224 ERVYVALISDIHRGSKEFLEDEFEKFIDWLNGPGDLASRVKYLIIAGDVVDGIGI---------YPGQEEELVIADIY-E 293 (481)
T ss_pred cceEEEEEeeeecccHHHHHHHHHHHHHHhcCCcccccceEEEEEeccccccccc---------ccCcccccccccch-H
Confidence 46899999999986432 223333331 245789999999942111 11111111222223 3
Q ss_pred HHHHHHHHHHHhhhcCCeEEccCCcccccc
Q 009637 266 RWDYWGRFMQNLVSKVPIMVVEGNHEIEAQ 295 (530)
Q Consensus 266 ~wd~~~~~l~~l~~~vP~~~v~GNHD~~~~ 295 (530)
+++.+.+++..+-..+-+++.|||||....
T Consensus 294 qy~~~A~~L~~vp~~I~v~i~PGnhDa~r~ 323 (481)
T COG1311 294 QYEELAEFLDQVPEHIKVFIMPGNHDAVRQ 323 (481)
T ss_pred HHHHHHHHHhhCCCCceEEEecCCCCcccc
Confidence 567778888888888999999999998644
No 98
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=96.59 E-value=0.051 Score=61.27 Aligned_cols=46 Identities=26% Similarity=0.189 Sum_probs=27.6
Q ss_pred CCCCEEEEEeCCCCccCCCCCCchhHHHHHHHHHHHHHc-CCcEEEEccccCc
Q 009637 361 SVTPWLVATWHPPWYSSYSSHYREAECMRVEMEALLYSY-GVDIVFNGHVHAY 412 (530)
Q Consensus 361 ~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~k~-~VdlvlsGH~H~y 412 (530)
+....+|++.|............+ . .. ..+.+. +||+++.||.|..
T Consensus 194 ~gaDvII~LsH~G~~~d~~~~~~e--n---~~-~~l~~v~gID~Il~GHsH~~ 240 (626)
T TIGR01390 194 KGADIIVALAHSGISADPYQPGAE--N---SA-YYLTKVPGIDAVLFGHSHAV 240 (626)
T ss_pred cCCCEEEEEeccCcCCCccccccc--h---HH-HHHhcCCCCCEEEcCCCCcc
Confidence 456779999998764321110111 1 11 123443 8999999999985
No 99
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=96.57 E-value=0.061 Score=60.88 Aligned_cols=57 Identities=21% Similarity=0.167 Sum_probs=31.4
Q ss_pred HHHHHHhcccCCCCCEEEEEeCCCCccCCCCCCchhHHHHHHHHHHHHH-cCCcEEEEccccCc
Q 009637 350 WLEKDLANVDRSVTPWLVATWHPPWYSSYSSHYREAECMRVEMEALLYS-YGVDIVFNGHVHAY 412 (530)
Q Consensus 350 WL~~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~k-~~VdlvlsGH~H~y 412 (530)
-+++.+.+.+.+....+|++.|............++ .... +.+ -+||+++.||.|..
T Consensus 206 ~a~~~v~~Lk~~gaDvII~LsH~G~~~d~~~~~aen-----~~~~-l~~v~gID~Il~GHsH~~ 263 (649)
T PRK09420 206 TARKYVPEMKEKGADIVVAIPHSGISADPYKAMAEN-----SVYY-LSEVPGIDAIMFGHSHAV 263 (649)
T ss_pred HHHHHHHHHHHcCCCEEEEEecCCcCCCCccccccc-----hhHH-HhcCCCCCEEEeCCCCcc
Confidence 344443333324567799999987643211001111 1111 334 37999999999985
No 100
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=96.57 E-value=0.004 Score=61.31 Aligned_cols=68 Identities=22% Similarity=0.341 Sum_probs=42.3
Q ss_pred EEEEEccCCCCCCh-HHHHHHHHh--C--------CCCEEEEcCccccccccccCCCCCcccccCCCCCCccccchHHHH
Q 009637 200 RIAIVGDLGLTYNT-TCTINHMSS--N--------EPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQPRWD 268 (530)
Q Consensus 200 rf~v~gD~g~~~~~-~~~~~~l~~--~--------~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~~~wd 268 (530)
||+++||+|..... .++++++.- . +.|.++++||++.. |. .-.
T Consensus 2 ~i~vigDIHG~~~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDr------G~--------------------~s~ 55 (234)
T cd07423 2 PFDIIGDVHGCYDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDR------GP--------------------DSP 55 (234)
T ss_pred CeEEEEECCCCHHHHHHHHHHcCCccccCccccCCCCCEEEEECCccCC------CC--------------------CHH
Confidence 79999999986432 234444411 1 36899999999952 32 012
Q ss_pred HHHHHHHHhhhcCCeEEccCCcccc
Q 009637 269 YWGRFMQNLVSKVPIMVVEGNHEIE 293 (530)
Q Consensus 269 ~~~~~l~~l~~~vP~~~v~GNHD~~ 293 (530)
+..+.+..+...-.+..+.||||..
T Consensus 56 evl~~l~~l~~~~~~~~v~GNHE~~ 80 (234)
T cd07423 56 EVLRLVMSMVAAGAALCVPGNHDNK 80 (234)
T ss_pred HHHHHHHHHhhCCcEEEEECCcHHH
Confidence 2334444443344688999999973
No 101
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=96.37 E-value=0.0083 Score=59.56 Aligned_cols=68 Identities=24% Similarity=0.290 Sum_probs=40.3
Q ss_pred eEEEEEccCCCCCCh-HHHHHHHHh---------CCCCEEEEcCccccccccccCCCCCcccccCCCCCCccccchHHHH
Q 009637 199 KRIAIVGDLGLTYNT-TCTINHMSS---------NEPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQPRWD 268 (530)
Q Consensus 199 ~rf~v~gD~g~~~~~-~~~~~~l~~---------~~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~~~wd 268 (530)
+|++++||+|..... .++++++.- ..-|.++++||+++. |.. + .
T Consensus 1 ~~~~vIGDIHG~~~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliDR------Gp~------------------S--~ 54 (245)
T PRK13625 1 MKYDIIGDIHGCYQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDR------GPH------------------S--L 54 (245)
T ss_pred CceEEEEECccCHHHHHHHHHHcCCCcccCcccCCCCCEEEEECcccCC------CcC------------------h--H
Confidence 378999999976432 223333221 123789999999952 321 0 1
Q ss_pred HHHHHHHHhhhcCCeEEccCCccc
Q 009637 269 YWGRFMQNLVSKVPIMVVEGNHEI 292 (530)
Q Consensus 269 ~~~~~l~~l~~~vP~~~v~GNHD~ 292 (530)
...+.+..+...-.++++.||||.
T Consensus 55 ~vl~~~~~~~~~~~~~~l~GNHE~ 78 (245)
T PRK13625 55 RMIEIVWELVEKKAAYYVPGNHCN 78 (245)
T ss_pred HHHHHHHHHhhCCCEEEEeCccHH
Confidence 122333333334578999999996
No 102
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=96.33 E-value=0.085 Score=52.04 Aligned_cols=190 Identities=16% Similarity=0.235 Sum_probs=90.1
Q ss_pred EEEccCCCCCCh---HHHHHHHHh-CCCCEEEEcCccccccccccCCCCCcccccCCCCCCccccchHHHHHHHHHHHHh
Q 009637 202 AIVGDLGLTYNT---TCTINHMSS-NEPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQPRWDYWGRFMQNL 277 (530)
Q Consensus 202 ~v~gD~g~~~~~---~~~~~~l~~-~~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~~~wd~~~~~l~~l 277 (530)
+++||.=..... ...+.++.+ .++|||+..|..+- .|.... + ..+.+++
T Consensus 1 LfiGDIvG~~Gr~~v~~~Lp~L~~~~~~DfVIaNgENaa------~G~Git---------------~---~~~~~L~--- 53 (253)
T PF13277_consen 1 LFIGDIVGKPGRRAVKEHLPELKEEYGIDFVIANGENAA------GGFGIT---------------P---KIAEELF--- 53 (253)
T ss_dssp EEE-EBBCHHHHHHHHHHHHHHGG--G-SEEEEE-TTTT------TTSS-----------------H---HHHHHHH---
T ss_pred CeEEecCCHHHHHHHHHHHHHHHhhcCCCEEEECCcccC------CCCCCC---------------H---HHHHHHH---
Confidence 367776432222 223444443 58999999999983 343210 1 1122222
Q ss_pred hhcCCeEEccCCccccccccccchHHHhhh---cCCCCCCC-CCCCcceEEEEcCcEEEEEEcc--cccCCCCHHHHHHH
Q 009637 278 VSKVPIMVVEGNHEIEAQAGNQTFVAYSSR---FAFPSEES-GSLSSFYYSFNAGGIHFIMLGA--YISYDKSGHQYKWL 351 (530)
Q Consensus 278 ~~~vP~~~v~GNHD~~~~~~~~~f~~y~~~---f~~P~~~~-~~~~~~yYsf~~G~v~fI~Ldt--~~~~~~~~~Q~~WL 351 (530)
...+- ..+.|||=+.. +....|... .--|.|-+ +..+..|..++.++.++.++|- .........=+.-+
T Consensus 54 ~~GvD-viT~GNH~wdk----kei~~~i~~~~~ilRPaN~p~~~pG~G~~i~~~~g~kv~ViNl~Gr~fm~~~~~PF~~~ 128 (253)
T PF13277_consen 54 KAGVD-VITMGNHIWDK----KEIFDFIDKEPRILRPANYPPGTPGRGYRIFEKNGKKVAVINLMGRVFMPPIDCPFRAA 128 (253)
T ss_dssp HHT-S-EEE--TTTTSS----TTHHHHHHH-SSEE--TTS-TT-SSBSEEEEEETTEEEEEEEEE--TTS---S-HHHHH
T ss_pred hcCCC-EEecCcccccC----cHHHHHHhcCCCcEECCCCCCCCCcCcEEEEEECCEEEEEEECcccccCCCCCChHHHH
Confidence 22444 45689998853 223333332 22333322 3456789999999877776663 32222222334445
Q ss_pred HHHHhcccCCCCCEEEEEeCCCCccCCCCCCchhHHHHHHHHHHHHHcCCcEEEEccccCceeeeecccCccCCCCcEEE
Q 009637 352 EKDLANVDRSVTPWLVATWHPPWYSSYSSHYREAECMRVEMEALLYSYGVDIVFNGHVHAYERSNRVFNYTLDPCGPVHI 431 (530)
Q Consensus 352 ~~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~k~~VdlvlsGH~H~yeR~~pv~~~~~~~~G~vyI 431 (530)
++.|++. +.+++.+||=+|.=. .....+| -.+.+-+|.+|+.-|+|.-.- +.++=|+|+.||
T Consensus 129 d~~l~~l-~~~~~~iiVDFHAEa-----------TSEK~A~-g~~lDGrvsaV~GTHTHVqTa-----DerILp~GTaYi 190 (253)
T PF13277_consen 129 DRLLEEL-KEETDIIIVDFHAEA-----------TSEKQAM-GWYLDGRVSAVVGTHTHVQTA-----DERILPGGTAYI 190 (253)
T ss_dssp HHHHHH------SEEEEEEE-S------------HHHHHHH-HHHHBTTBSEEEEESSSS-BS-------EE-TTS-EEE
T ss_pred HHHHHhc-cccCCEEEEEeecCc-----------HHHHHHH-HHHhCCcEEEEEeCCCCccCc-----hhhccCCCCEEE
Confidence 5555554 246778999999421 1112222 345566899999999996322 222236899999
Q ss_pred Ee-CCCccccc
Q 009637 432 TI-GDGGNLEK 441 (530)
Q Consensus 432 v~-G~gG~~e~ 441 (530)
+- |.-|...+
T Consensus 191 TDvGMtG~~ds 201 (253)
T PF13277_consen 191 TDVGMTGPYDS 201 (253)
T ss_dssp S---EBEESSS
T ss_pred ecCccccCccc
Confidence 74 66666544
No 103
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=96.24 E-value=0.006 Score=59.45 Aligned_cols=37 Identities=32% Similarity=0.507 Sum_probs=26.5
Q ss_pred EEEEEccCCCCCCh-HHHHHHHH-hCCCCEEEEcCcccc
Q 009637 200 RIAIVGDLGLTYNT-TCTINHMS-SNEPDLVLLVGDVTY 236 (530)
Q Consensus 200 rf~v~gD~g~~~~~-~~~~~~l~-~~~pDfvl~~GDl~Y 236 (530)
|++++||+|..... .++++.+. ..+.|.++++||+++
T Consensus 16 ri~visDiHg~~~~l~~~l~~~~~~~~~d~l~~lGD~vd 54 (218)
T PRK09968 16 HIWVVGDIHGEYQLLQSRLHQLSFCPETDLLISVGDNID 54 (218)
T ss_pred eEEEEEeccCCHHHHHHHHHhcCCCCCCCEEEECCCCcC
Confidence 89999999975332 22333333 246899999999995
No 104
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=95.88 E-value=0.013 Score=57.30 Aligned_cols=67 Identities=18% Similarity=0.292 Sum_probs=39.9
Q ss_pred EEEEccCCCCCCh-HHHHHHHHhC--------CCCEEEEcCccccccccccCCCCCcccccCCCCCCccccchHHHHHHH
Q 009637 201 IAIVGDLGLTYNT-TCTINHMSSN--------EPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQPRWDYWG 271 (530)
Q Consensus 201 f~v~gD~g~~~~~-~~~~~~l~~~--------~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~~~wd~~~ 271 (530)
+.++||+|..... .+.++++... ..|.++++||++.. |.. + ....
T Consensus 1 ~~vIGDIHG~~~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~IDR------Gp~------------------S--~~vl 54 (222)
T cd07413 1 YDFIGDIHGHAEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDR------GPE------------------I--RELL 54 (222)
T ss_pred CEEEEeccCCHHHHHHHHHHcCCCccccccCCCCCEEEEeCcccCC------CCC------------------H--HHHH
Confidence 3589999986432 2334444211 35899999999952 320 0 1223
Q ss_pred HHHHHhhhcCCeEEccCCcccc
Q 009637 272 RFMQNLVSKVPIMVVEGNHEIE 293 (530)
Q Consensus 272 ~~l~~l~~~vP~~~v~GNHD~~ 293 (530)
+.+..+...-.++.+.||||..
T Consensus 55 ~~l~~l~~~~~~~~l~GNHE~~ 76 (222)
T cd07413 55 EIVKSMVDAGHALAVMGNHEFN 76 (222)
T ss_pred HHHHHhhcCCCEEEEEccCcHH
Confidence 3343333334688999999963
No 105
>COG5555 Cytolysin, a secreted calcineurin-like phosphatase [Cell motility and secretion]
Probab=95.86 E-value=0.012 Score=58.15 Aligned_cols=141 Identities=20% Similarity=0.328 Sum_probs=86.0
Q ss_pred HHhhhcCCeEEccCCccccccccc-------cchHHHhhhcCCCC------CCC--CCCCcceEEEEcCcEEEEEEcccc
Q 009637 275 QNLVSKVPIMVVEGNHEIEAQAGN-------QTFVAYSSRFAFPS------EES--GSLSSFYYSFNAGGIHFIMLGAYI 339 (530)
Q Consensus 275 ~~l~~~vP~~~v~GNHD~~~~~~~-------~~f~~y~~~f~~P~------~~~--~~~~~~yYsf~~G~v~fI~Ldt~~ 339 (530)
.++...+|+|+-.||||...+.-. +...+|...+.-+. -.. -..-..-||++.|++|.+-+-+..
T Consensus 165 G~~h~H~PvYvGlgnhdldq~gpph~~DWyRrElrdyve~~Hr~~vf~Kppvp~atYd~l~d~ySwdwgglhlvh~hrf~ 244 (392)
T COG5555 165 GNIHMHYPVYVGLGNHDLDQKGPPHSLDWYRRELRDYVENYHRSDVFWKPPVPPATYDQLKDRYSWDWGGLHLVHYHRFI 244 (392)
T ss_pred CCceeeeeeEeccCchhhcccCCCCchhHHHHHHHHHHHhhcCcCcccCCCCCcccccccchheeccccceeEEEEeeec
Confidence 344567999999999999744221 12233333222111 111 123345689999999998876543
Q ss_pred cCC-C-CHHHHHHHHHHHhcccCCCCCEEEEEeCCCCccCCCCCCch----------------hHHHHHHHHHHHHHcCC
Q 009637 340 SYD-K-SGHQYKWLEKDLANVDRSVTPWLVATWHPPWYSSYSSHYRE----------------AECMRVEMEALLYSYGV 401 (530)
Q Consensus 340 ~~~-~-~~~Q~~WL~~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~----------------~~~~r~~l~~ll~k~~V 401 (530)
.-. + ...-+-||+.+|........| ++++.|.-+-.-....++. ....|.++...++-|+|
T Consensus 245 Gd~~~ga~sslpwlk~dl~~~aadgrp-v~LfqhyGwdtfsteawdpAsrT~Dd~Gsgaphww~a~er~all~~lqGYNv 323 (392)
T COG5555 245 GDAEPGANSSLPWLKVDLIYSAADGRP-VYLFQHYGWDTFSTEAWDPASRTLDDTGSGAPHWWPAPERGALLFFLQGYNV 323 (392)
T ss_pred cccCCCccccCcceeccceeeccCCCc-eeehhhhCccceeccccCchhcccccCCCCCCCCCCCCCcchHHHhhcCcee
Confidence 211 1 223467999999876545555 8888887653211111110 11246788889999999
Q ss_pred cEEEEccccCceeee
Q 009637 402 DIVFNGHVHAYERSN 416 (530)
Q Consensus 402 dlvlsGH~H~yeR~~ 416 (530)
.-.+.||.|.+.-.+
T Consensus 324 vg~fhGhkhd~~may 338 (392)
T COG5555 324 VGTFHGHKHDFNMAY 338 (392)
T ss_pred EEeccccccccceee
Confidence 999999999875444
No 106
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=95.84 E-value=0.15 Score=50.30 Aligned_cols=135 Identities=13% Similarity=0.157 Sum_probs=68.8
Q ss_pred HHHHHHhhhcCCeEEccCCccccccccccchHHHh---hhcCCCCCCCCCC---CcceEEEEcCc--EEEEEEcccccCC
Q 009637 271 GRFMQNLVSKVPIMVVEGNHEIEAQAGNQTFVAYS---SRFAFPSEESGSL---SSFYYSFNAGG--IHFIMLGAYISYD 342 (530)
Q Consensus 271 ~~~l~~l~~~vP~~~v~GNHD~~~~~~~~~f~~y~---~~f~~P~~~~~~~---~~~yYsf~~G~--v~fI~Ldt~~~~~ 342 (530)
.+.|+.+ .+-++.+.+||++... ...+.... ..-.++..+.+.. ...+..++.++ +.|+.+.+.....
T Consensus 70 ~~~L~~~--G~d~~tlaNNH~fD~G--~~gl~~t~~~l~~~~i~~~g~~~~~~~~~~~~i~~~~g~kVg~ig~t~~~~~~ 145 (239)
T cd07381 70 ADALKAA--GFDVVSLANNHTLDYG--EEGLLDTLDALDEAGIAHAGAGRNLEEARRPAILEVNGIKVAFLAYTYGTNGI 145 (239)
T ss_pred HHHHHHh--CCCEEEcccccccccc--hHHHHHHHHHHHHcCCceeECCCCHHHhcCcEEEEECCEEEEEEEEECCCCCC
Confidence 3444443 5566666669998632 22222222 2223443222211 13455567777 5555554421110
Q ss_pred ----------CCHHHHHHHHHHHhcccCCCCCEEEEEeCCCCccCCCCCCchhHHHHHHHHHHHHHcCCcEEEEccccCc
Q 009637 343 ----------KSGHQYKWLEKDLANVDRSVTPWLVATWHPPWYSSYSSHYREAECMRVEMEALLYSYGVDIVFNGHVHAY 412 (530)
Q Consensus 343 ----------~~~~Q~~WL~~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~k~~VdlvlsGH~H~y 412 (530)
....-.+-+++.+++.+++ ...+||+.|-..-... ........+...+.+.++|+|+.||.|..
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~i~~lr~~-~D~vIv~~H~G~e~~~-----~p~~~~~~la~~l~~~G~D~IiG~H~Hv~ 219 (239)
T cd07381 146 PLAAGARPGGVNPLDLERIAADIAEAKKK-ADIVIVSLHWGVEYSY-----YPTPEQRELARALIDAGADLVIGHHPHVL 219 (239)
T ss_pred cCcccCCccccCccCHHHHHHHHHHHhhc-CCEEEEEecCcccCCC-----CCCHHHHHHHHHHHHCCCCEEEcCCCCcC
Confidence 0111134455566555433 7789999996432111 11112234555555679999999999987
Q ss_pred eee
Q 009637 413 ERS 415 (530)
Q Consensus 413 eR~ 415 (530)
+-.
T Consensus 220 q~~ 222 (239)
T cd07381 220 QGI 222 (239)
T ss_pred CCe
Confidence 543
No 107
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=95.80 E-value=0.013 Score=58.65 Aligned_cols=64 Identities=25% Similarity=0.352 Sum_probs=40.6
Q ss_pred EEEccCCCCCCh-HHHHHHHHh-CCCCEEEEcCccccccccccCCCCCcccccCCCCCCccccchHHHHHHHHHHHHhhh
Q 009637 202 AIVGDLGLTYNT-TCTINHMSS-NEPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQPRWDYWGRFMQNLVS 279 (530)
Q Consensus 202 ~v~gD~g~~~~~-~~~~~~l~~-~~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~~~wd~~~~~l~~l~~ 279 (530)
.++||+|..... .++++++.. .+.|.++++||++.. |.. + .+..+.+..+.
T Consensus 2 yvIGDIHG~~~~L~~LL~~i~~~~~~D~Li~lGDlVdR------Gp~------------------s--~evl~~l~~l~- 54 (257)
T cd07422 2 YAIGDIQGCYDELQRLLEKINFDPAKDRLWLVGDLVNR------GPD------------------S--LETLRFVKSLG- 54 (257)
T ss_pred EEEECCCCCHHHHHHHHHhcCCCCCCCEEEEecCcCCC------CcC------------------H--HHHHHHHHhcC-
Confidence 589999976432 334454432 357999999999942 320 1 12334444432
Q ss_pred cCCeEEccCCcccc
Q 009637 280 KVPIMVVEGNHEIE 293 (530)
Q Consensus 280 ~vP~~~v~GNHD~~ 293 (530)
..+..+.||||..
T Consensus 55 -~~v~~VlGNHD~~ 67 (257)
T cd07422 55 -DSAKTVLGNHDLH 67 (257)
T ss_pred -CCeEEEcCCchHH
Confidence 4688999999974
No 108
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=95.77 E-value=0.013 Score=56.96 Aligned_cols=65 Identities=17% Similarity=0.230 Sum_probs=39.5
Q ss_pred EEccCCCCCCh-HHHHHHHHhCCCCEEEEcCccccccccccCCCCCcccccCCCCCCccccchHHHHHHHHHHHHhhh-c
Q 009637 203 IVGDLGLTYNT-TCTINHMSSNEPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQPRWDYWGRFMQNLVS-K 280 (530)
Q Consensus 203 v~gD~g~~~~~-~~~~~~l~~~~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~~~wd~~~~~l~~l~~-~ 280 (530)
++||+|..... ..+++.+.....|.++++||++.. |.. .....+.+..+.. .
T Consensus 2 ~igDiHg~~~~l~~~l~~~~~~~~d~li~lGD~vdr------g~~--------------------~~~~l~~l~~~~~~~ 55 (225)
T cd00144 2 VIGDIHGCLDDLLRLLEKIGFPPNDKLIFLGDYVDR------GPD--------------------SVEVIDLLLALKILP 55 (225)
T ss_pred EEeCCCCCHHHHHHHHHHhCCCCCCEEEEECCEeCC------CCC--------------------cHHHHHHHHHhcCCC
Confidence 78999965322 233444444578999999999952 320 0122233333211 4
Q ss_pred CCeEEccCCcccc
Q 009637 281 VPIMVVEGNHEIE 293 (530)
Q Consensus 281 vP~~~v~GNHD~~ 293 (530)
.+++.+.||||..
T Consensus 56 ~~~~~l~GNHe~~ 68 (225)
T cd00144 56 DNVILLRGNHEDM 68 (225)
T ss_pred CcEEEEccCchhh
Confidence 5799999999975
No 109
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=95.68 E-value=0.043 Score=43.81 Aligned_cols=76 Identities=21% Similarity=0.325 Sum_probs=46.5
Q ss_pred CCceeEEeecCCCCeEEEEEEcCCCccCCCCCCCCCCCCccEEEEecCCCCcceEEEEEEEEeeeccccCCccccccCeE
Q 009637 75 EPEQLSVSLSFNHDSIWITWITGEFQIGDNIKPLDPKTVASFVRYGTSRTNLNHEATGHSLVYDQLYPFEGLQNYTSGII 154 (530)
Q Consensus 75 ~P~qi~l~~~~~~~~m~V~W~T~~~~~g~~~~~~~p~~~~~~V~yg~~~~~~~~~a~g~~~~y~~~~~~~g~~~~~~~~~ 154 (530)
+|+.+++.-.. .+++.|+|...... +. ....=.|+|....+..... .... ++-.
T Consensus 2 ~P~~l~v~~~~-~~sv~v~W~~~~~~-~~-------~~~~y~v~~~~~~~~~~~~----~~~~-------------~~~~ 55 (85)
T PF00041_consen 2 APENLSVSNIS-PTSVTVSWKPPSSG-NG-------PITGYRVEYRSVNSTSDWQ----EVTV-------------PGNE 55 (85)
T ss_dssp SSEEEEEEEEC-SSEEEEEEEESSST-SS-------SESEEEEEEEETTSSSEEE----EEEE-------------ETTS
T ss_pred cCcCeEEEECC-CCEEEEEEECCCCC-CC-------CeeEEEEEEEecccceeee----eeee-------------eeee
Confidence 48888887763 89999999986411 11 1123456665554433100 0001 1112
Q ss_pred EEEEeCCCCCCCEEEEEEeeCC
Q 009637 155 HHVRLTGLEPNNKYYYQCGDPS 176 (530)
Q Consensus 155 h~v~l~gL~P~T~Y~Yrvg~~~ 176 (530)
+.+.|++|+|+|.|.+||...+
T Consensus 56 ~~~~i~~L~p~t~Y~~~v~a~~ 77 (85)
T PF00041_consen 56 TSYTITGLQPGTTYEFRVRAVN 77 (85)
T ss_dssp SEEEEESCCTTSEEEEEEEEEE
T ss_pred eeeeeccCCCCCEEEEEEEEEe
Confidence 3788899999999999997544
No 110
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=95.63 E-value=0.021 Score=57.78 Aligned_cols=37 Identities=22% Similarity=0.263 Sum_probs=25.6
Q ss_pred EEEEEccCCCCCCh-HHHHHHHHhC------CCCEEEEcCcccc
Q 009637 200 RIAIVGDLGLTYNT-TCTINHMSSN------EPDLVLLVGDVTY 236 (530)
Q Consensus 200 rf~v~gD~g~~~~~-~~~~~~l~~~------~pDfvl~~GDl~Y 236 (530)
++.++||+|..... ..+++.+.+. ..+.++++||+++
T Consensus 3 ~iyaIGDIHG~~d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVD 46 (304)
T cd07421 3 VVICVGDIHGYISKLNNLWLNLQSALGPSDFASALVIFLGDYCD 46 (304)
T ss_pred eEEEEEeccCCHHHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCC
Confidence 78999999986432 3344444321 3568999999995
No 111
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=95.59 E-value=0.36 Score=47.22 Aligned_cols=190 Identities=18% Similarity=0.271 Sum_probs=102.3
Q ss_pred eEEEEEccCCCCCChHHHHHH---HH-hCCCCEEEEcCccccccccccCCCCCcccccCCCCCCccccchHHHHHHHHHH
Q 009637 199 KRIAIVGDLGLTYNTTCTINH---MS-SNEPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQPRWDYWGRFM 274 (530)
Q Consensus 199 ~rf~v~gD~g~~~~~~~~~~~---l~-~~~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~~~wd~~~~~l 274 (530)
+|++++||+=.......+.++ +. +.++|||+..|-.+- .|... -|+.+..++
T Consensus 1 mriLfiGDvvGk~Gr~~v~~~Lp~lk~kyk~dfvI~N~ENaa------~G~Gi------------------t~k~y~~l~ 56 (266)
T COG1692 1 MRILFIGDVVGKPGRKAVKEHLPQLKSKYKIDFVIVNGENAA------GGFGI------------------TEKIYKELL 56 (266)
T ss_pred CeEEEEecccCcchHHHHHHHhHHHHHhhcCcEEEEcCcccc------CCcCC------------------CHHHHHHHH
Confidence 589999998655433333333 33 348999999998873 34321 133333333
Q ss_pred HHhhhcCCeEEccCCccccccccccchHHHhh---hcCCCCCCC-CCCCcceEEEEcCcEEEEEEc--ccccCCC-CHHH
Q 009637 275 QNLVSKVPIMVVEGNHEIEAQAGNQTFVAYSS---RFAFPSEES-GSLSSFYYSFNAGGIHFIMLG--AYISYDK-SGHQ 347 (530)
Q Consensus 275 ~~l~~~vP~~~v~GNHD~~~~~~~~~f~~y~~---~f~~P~~~~-~~~~~~yYsf~~G~v~fI~Ld--t~~~~~~-~~~Q 347 (530)
+ ..+- +++.|||=+... .-..|.. ++--|.+-+ +..+..|+-|+..+..+.+.| ....... -..-
T Consensus 57 ~---~G~d-viT~GNH~wd~~----ei~~~i~~~~~ilRP~N~p~~~~G~G~~~f~~ng~ki~V~Nl~Grv~m~~~~d~P 128 (266)
T COG1692 57 E---AGAD-VITLGNHTWDQK----EILDFIDNADRILRPANYPDGTPGKGSRIFKINGKKLAVINLMGRVFMPPALDNP 128 (266)
T ss_pred H---hCCC-EEecccccccch----HHHHHhhcccceeccCCCCCCCCcceEEEEEeCCcEEEEEEeeccccCccccCCH
Confidence 2 2333 567899987532 1112222 222333322 133455666777665554444 3222211 2223
Q ss_pred HHHHHHHHhcccCCCCCEEEEEeCCCCccCCCCCCchhHHHHHHHHHHHHHcCCcEEEEccccCceeeeecccCccCCCC
Q 009637 348 YKWLEKDLANVDRSVTPWLVATWHPPWYSSYSSHYREAECMRVEMEALLYSYGVDIVFNGHVHAYERSNRVFNYTLDPCG 427 (530)
Q Consensus 348 ~~WL~~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~k~~VdlvlsGH~H~yeR~~pv~~~~~~~~G 427 (530)
.+=+++.|.+.+ .+++.+||-+|.-.-+ | ..+| -++.+-+|-+|+.=|+|.-.--. +.-+.|
T Consensus 129 F~~~d~l~~~~~-~~~~~iiVDFHAEtTS-------E----K~a~-g~yldGrvsavvGTHTHV~TaD~-----rIL~~G 190 (266)
T COG1692 129 FKAADKLLDEIK-LGTDLIIVDFHAETTS-------E----KNAF-GWYLDGRVSAVVGTHTHVPTADE-----RILPKG 190 (266)
T ss_pred HHHHHHHHHhCc-cCCceEEEEccccchh-------h----hhhh-heEEcCeEEEEEeccCccccccc-----eecCCC
Confidence 444566666654 3557799999963221 1 1111 12334478999999999743322 224689
Q ss_pred cEEEEe-CCCcc
Q 009637 428 PVHITI-GDGGN 438 (530)
Q Consensus 428 ~vyIv~-G~gG~ 438 (530)
+.||+- |.-|.
T Consensus 191 TayiTDvGMtG~ 202 (266)
T COG1692 191 TAYITDVGMTGP 202 (266)
T ss_pred cEEEecCccccc
Confidence 999864 55554
No 112
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=95.34 E-value=0.42 Score=47.13 Aligned_cols=136 Identities=12% Similarity=0.136 Sum_probs=67.4
Q ss_pred HHHHHHHhhhcCCeEEccCCccccccccccchHHHhh---hcCCCCCCCCCC---CcceEEEEcCcEE--EEEEccccc-
Q 009637 270 WGRFMQNLVSKVPIMVVEGNHEIEAQAGNQTFVAYSS---RFAFPSEESGSL---SSFYYSFNAGGIH--FIMLGAYIS- 340 (530)
Q Consensus 270 ~~~~l~~l~~~vP~~~v~GNHD~~~~~~~~~f~~y~~---~f~~P~~~~~~~---~~~yYsf~~G~v~--fI~Ldt~~~- 340 (530)
..+.|+.+ .+-++.+.+|||+... ...+....+ ...++..+.+.. ...+..++.++++ ||.+-+...
T Consensus 65 ~~~~l~~~--G~d~~~laNNH~fD~G--~~gl~~t~~~l~~a~i~~~g~~~~~~~~~~~~i~~~~g~kIg~ig~t~~~~~ 140 (239)
T smart00854 65 NAAALKAA--GFDVVSLANNHSLDYG--EEGLLDTLAALDAAGIAHVGAGRNLAEARKPAIVEVKGIKIALLAYTYGTNN 140 (239)
T ss_pred HHHHHHHh--CCCEEEeccCcccccc--hHHHHHHHHHHHHCCCCEeeCCCChHHhhCcEEEEECCEEEEEEEEEcCCCC
Confidence 34444443 4555555569999632 222222222 223443322111 1345667788755 454433211
Q ss_pred -CC-----C-----CHHHHHHHHHHHhcccCCCCCEEEEEeCCCCccCCCCCCchhHHHHHHHHHHHHHcCCcEEEEccc
Q 009637 341 -YD-----K-----SGHQYKWLEKDLANVDRSVTPWLVATWHPPWYSSYSSHYREAECMRVEMEALLYSYGVDIVFNGHV 409 (530)
Q Consensus 341 -~~-----~-----~~~Q~~WL~~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~k~~VdlvlsGH~ 409 (530)
+. . .....+-+++++++++. +...+||+.|--.-.... . . .....+..-+.+.++|+|+.||.
T Consensus 141 ~~~~~~~~~g~~~~~~~~~~~i~~~i~~lr~-~~D~vIv~~H~G~e~~~~---p-~-~~~~~~A~~l~~~G~DvIiG~H~ 214 (239)
T smart00854 141 GWAASKDRPGVALLPDLDREKILADIARARK-KADVVIVSLHWGVEYQYE---P-T-DEQRELAHALIDAGADVVIGHHP 214 (239)
T ss_pred CcccCCCCCCeeecCcCCHHHHHHHHHHHhc-cCCEEEEEecCccccCCC---C-C-HHHHHHHHHHHHcCCCEEEcCCC
Confidence 10 0 00112334455555432 467899999975422111 1 1 11233444444579999999999
Q ss_pred cCceee
Q 009637 410 HAYERS 415 (530)
Q Consensus 410 H~yeR~ 415 (530)
|..+..
T Consensus 215 H~~~~~ 220 (239)
T smart00854 215 HVLQPI 220 (239)
T ss_pred CcCCce
Confidence 987654
No 113
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=95.29 E-value=0.025 Score=56.95 Aligned_cols=37 Identities=22% Similarity=0.404 Sum_probs=26.6
Q ss_pred EEEEEccCCCCCCh-HHHHHHHH-hCCCCEEEEcCcccc
Q 009637 200 RIAIVGDLGLTYNT-TCTINHMS-SNEPDLVLLVGDVTY 236 (530)
Q Consensus 200 rf~v~gD~g~~~~~-~~~~~~l~-~~~pDfvl~~GDl~Y 236 (530)
++.++||+|..... .+.++++. ....|-++++||++.
T Consensus 2 ~~YvIGDIHGc~daL~~LL~~i~f~~~~D~l~~lGDlVd 40 (279)
T TIGR00668 2 ATYLIGDLHGCYDELQALLERVEFDPGQDTLWLTGDLVA 40 (279)
T ss_pred cEEEEEcccCCHHHHHHHHHHhCcCCCCCEEEEeCCccC
Confidence 56799999986433 44555554 235789999999995
No 114
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=95.08 E-value=0.056 Score=52.84 Aligned_cols=73 Identities=21% Similarity=0.444 Sum_probs=48.1
Q ss_pred eEEEEEccCCCCCCh--------------HH---HHHH-HHhCCCCEEEEcCccccccccccCCCCCcccccCCCCCCcc
Q 009637 199 KRIAIVGDLGLTYNT--------------TC---TINH-MSSNEPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIH 260 (530)
Q Consensus 199 ~rf~v~gD~g~~~~~--------------~~---~~~~-l~~~~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~ 260 (530)
-+.++++|+|.+... .. .+++ +.+.+|+-++.+||+-.+- +.
T Consensus 20 ~~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~~ii~~~~p~~lIilGD~KH~~-----~~--------------- 79 (235)
T COG1407 20 GRTLVVADLHLGYEESLARRGINLPRYQTDRILKRLDRIIERYGPKRLIILGDLKHEF-----GK--------------- 79 (235)
T ss_pred CcEEEEEecccchhHHHHhcCcccCchhHHHHHHHHHHHHHhcCCCEEEEcCcccccc-----Cc---------------
Confidence 478999999987532 12 2332 3357999999999998521 11
Q ss_pred ccchHHHHHHHHHHHHhhhcCCeEEccCCcccc
Q 009637 261 ETYQPRWDYWGRFMQNLVSKVPIMVVEGNHEIE 293 (530)
Q Consensus 261 ~~y~~~wd~~~~~l~~l~~~vP~~~v~GNHD~~ 293 (530)
.....|+....+++.+... -++.+.||||..
T Consensus 80 -~~~~e~~~~~~f~~~~~~~-evi~i~GNHD~~ 110 (235)
T COG1407 80 -SLRQEKEEVREFLELLDER-EVIIIRGNHDNG 110 (235)
T ss_pred -cccccHHHHHHHHHHhccC-cEEEEeccCCCc
Confidence 0123466666666665443 599999999975
No 115
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=93.46 E-value=1.4 Score=43.60 Aligned_cols=128 Identities=13% Similarity=0.175 Sum_probs=71.2
Q ss_pred cCCeEEccCCccccccccccchH---HHhhhcCCCCCCCCC---CCcceEEEEcCcEEEEEEcc--cc-cCC--------
Q 009637 280 KVPIMVVEGNHEIEAQAGNQTFV---AYSSRFAFPSEESGS---LSSFYYSFNAGGIHFIMLGA--YI-SYD-------- 342 (530)
Q Consensus 280 ~vP~~~v~GNHD~~~~~~~~~f~---~y~~~f~~P~~~~~~---~~~~yYsf~~G~v~fI~Ldt--~~-~~~-------- 342 (530)
.+-++.+.-||.+... .+.+. ...+...++..+.+. .......++.+++++-++.. .. ...
T Consensus 75 G~d~vslANNH~~D~G--~~gl~~Tl~~L~~~gi~~~Gag~~~~~a~~p~i~~~~g~kia~l~~t~~~~~~~~~~~~~~~ 152 (250)
T PF09587_consen 75 GFDVVSLANNHIFDYG--EEGLLDTLEALDKAGIPYVGAGRNLEEARRPAIIEVNGVKIAFLGYTDGENGYSSANGNRPY 152 (250)
T ss_pred CCCEEEecCCCCcccc--HHHHHHHHHHHHHCCCcEeECcCChHHhcCeEEEEECCEEEEEEEEEcCCCCCccccccccc
Confidence 5677778889987532 12222 222233333332211 12234556777766555542 11 000
Q ss_pred ------------CCHHHHHHHHHHHhcccCCCCCEEEEEeCCCCccCCCCCCchhHHHHHHHHHHHHHcCCcEEEEcccc
Q 009637 343 ------------KSGHQYKWLEKDLANVDRSVTPWLVATWHPPWYSSYSSHYREAECMRVEMEALLYSYGVDIVFNGHVH 410 (530)
Q Consensus 343 ------------~~~~Q~~WL~~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~k~~VdlvlsGH~H 410 (530)
....+.+.+++++++++ ++..++||+.|--.-... ........+...+-+.|+|+|+.+|.|
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~i~~~i~~~r-~~~D~vIv~~HwG~e~~~-----~p~~~q~~~a~~lidaGaDiIiG~HpH 226 (250)
T PF09587_consen 153 GFSYRPDKAGLNPNRPGIERIKEDIREAR-KKADVVIVSLHWGIEYEN-----YPTPEQRELARALIDAGADIIIGHHPH 226 (250)
T ss_pred cccccccccccccccchHHHHHHHHHHHh-cCCCEEEEEeccCCCCCC-----CCCHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 01234588888888876 567889999996321111 111223445555566899999999999
Q ss_pred Cceee
Q 009637 411 AYERS 415 (530)
Q Consensus 411 ~yeR~ 415 (530)
..+-.
T Consensus 227 v~q~~ 231 (250)
T PF09587_consen 227 VIQPV 231 (250)
T ss_pred cccce
Confidence 87654
No 116
>KOG4419 consensus 5' nucleotidase [Nucleotide transport and metabolism]
Probab=93.27 E-value=0.77 Score=50.27 Aligned_cols=58 Identities=19% Similarity=0.240 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEEeCCCCccCCCCCCchhHHHHHHHHHHHHHc-CCcE-EEEccccCce
Q 009637 345 GHQYKWLEKDLANVDRSVTPWLVATWHPPWYSSYSSHYREAECMRVEMEALLYSY-GVDI-VFNGHVHAYE 413 (530)
Q Consensus 345 ~~Q~~WL~~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~k~-~Vdl-vlsGH~H~ye 413 (530)
-.|.+|-.+.++. ....-+|+++|.|.-.. .+ ....+.++...+ ++++ ||-||.|...
T Consensus 211 i~~~~~~~~m~~~---~~idlii~lgH~~~~~~-----~e---~~~~~~~ir~~~p~t~IqviGGHshird 270 (602)
T KOG4419|consen 211 ITQSEWEQDMVNT---TDIDLIIALGHSPVRDD-----DE---WKSLHAEIRKVHPNTPIQVIGGHSHIRD 270 (602)
T ss_pred HhccchHHHHhhc---cCccEEEEecccccccc-----hh---hhhHHHHHhhhCCCCceEEECchhhhhh
Confidence 3566787777776 44556899999986321 11 112444444455 6888 9999999643
No 117
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=93.06 E-value=0.17 Score=51.90 Aligned_cols=23 Identities=9% Similarity=0.034 Sum_probs=19.9
Q ss_pred HHHHHHHHHHcCCcEEEEccccC
Q 009637 389 RVEMEALLYSYGVDIVFNGHVHA 411 (530)
Q Consensus 389 r~~l~~ll~k~~VdlvlsGH~H~ 411 (530)
.++.++.|++++.++++=||.=.
T Consensus 222 ~~~~~~Fl~~n~l~~iiR~He~~ 244 (305)
T cd07416 222 YRAVCEFLQKNNLLSIIRAHEAQ 244 (305)
T ss_pred HHHHHHHHHHcCCeEEEEecccc
Confidence 46788999999999999999854
No 118
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=92.33 E-value=0.29 Score=49.38 Aligned_cols=37 Identities=11% Similarity=0.213 Sum_probs=25.0
Q ss_pred EEEEEccCCCCCCh-HHHHHHHHhCCCCEEEEcCcccc
Q 009637 200 RIAIVGDLGLTYNT-TCTINHMSSNEPDLVLLVGDVTY 236 (530)
Q Consensus 200 rf~v~gD~g~~~~~-~~~~~~l~~~~pDfvl~~GDl~Y 236 (530)
+++++||+|..... .+.++.+.....+-++++||+++
T Consensus 29 ~i~vvGDiHG~~~~l~~ll~~~~~~~~~~~vfLGD~VD 66 (271)
T smart00156 29 PVTVCGDIHGQFDDLLRLFDLNGPPPDTNYVFLGDYVD 66 (271)
T ss_pred CEEEEEeCcCCHHHHHHHHHHcCCCCCceEEEeCCccC
Confidence 68999999975322 22333333345678999999994
No 119
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=91.97 E-value=0.34 Score=49.97 Aligned_cols=23 Identities=13% Similarity=0.192 Sum_probs=20.1
Q ss_pred HHHHHHHHHHcCCcEEEEccccC
Q 009637 389 RVEMEALLYSYGVDIVFNGHVHA 411 (530)
Q Consensus 389 r~~l~~ll~k~~VdlvlsGH~H~ 411 (530)
.++..+.|++++.++++=||.-.
T Consensus 253 ~~~~~~Fl~~n~l~~IIR~He~v 275 (321)
T cd07420 253 PDVTSKVLQKHGLSLLIRSHECK 275 (321)
T ss_pred HHHHHHHHHHCCCcEEEEcChhh
Confidence 46788999999999999999854
No 120
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=91.46 E-value=0.32 Score=49.45 Aligned_cols=23 Identities=13% Similarity=0.222 Sum_probs=20.3
Q ss_pred HHHHHHHHHHcCCcEEEEccccC
Q 009637 389 RVEMEALLYSYGVDIVFNGHVHA 411 (530)
Q Consensus 389 r~~l~~ll~k~~VdlvlsGH~H~ 411 (530)
.+++++.+++++.++++=||.-.
T Consensus 214 ~~~~~~Fl~~n~l~~iiR~He~~ 236 (285)
T cd07415 214 QDVVEEFNHNNGLTLICRAHQLV 236 (285)
T ss_pred HHHHHHHHHHCCCeEEEEcCccc
Confidence 46888999999999999999854
No 121
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=91.24 E-value=0.36 Score=49.25 Aligned_cols=23 Identities=13% Similarity=0.244 Sum_probs=20.2
Q ss_pred HHHHHHHHHHcCCcEEEEccccC
Q 009637 389 RVEMEALLYSYGVDIVFNGHVHA 411 (530)
Q Consensus 389 r~~l~~ll~k~~VdlvlsGH~H~ 411 (530)
.+++++.|++.+.++++=||.-.
T Consensus 222 ~~~~~~Fl~~n~l~~iiR~He~~ 244 (293)
T cd07414 222 KDVVAKFLNKHDLDLICRAHQVV 244 (293)
T ss_pred HHHHHHHHHHcCCeEEEECCccc
Confidence 46888999999999999999854
No 122
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=91.18 E-value=0.51 Score=50.93 Aligned_cols=41 Identities=32% Similarity=0.476 Sum_probs=31.5
Q ss_pred CeEEEEEccCCCCCC---------hHHHHHHH----HhCCCCEEEEcCcccccc
Q 009637 198 PKRIAIVGDLGLTYN---------TTCTINHM----SSNEPDLVLLVGDVTYAN 238 (530)
Q Consensus 198 ~~rf~v~gD~g~~~~---------~~~~~~~l----~~~~pDfvl~~GDl~Yad 238 (530)
.+||++..|.|.++. ...++++| .+++.||||..||+...+
T Consensus 13 tirILVaTD~HlGY~EkD~vrg~DSf~tFeEIl~iA~e~~VDmiLlGGDLFHeN 66 (646)
T KOG2310|consen 13 TIRILVATDNHLGYGEKDAVRGDDSFVTFEEILEIAQENDVDMILLGGDLFHEN 66 (646)
T ss_pred ceEEEEeecCccccccCCcccccchHHHHHHHHHHHHhcCCcEEEecCcccccC
Confidence 699999999998863 23344444 357999999999999754
No 123
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=90.69 E-value=0.44 Score=48.82 Aligned_cols=23 Identities=4% Similarity=0.033 Sum_probs=20.2
Q ss_pred HHHHHHHHHHcCCcEEEEccccC
Q 009637 389 RVEMEALLYSYGVDIVFNGHVHA 411 (530)
Q Consensus 389 r~~l~~ll~k~~VdlvlsGH~H~ 411 (530)
.+++++.+++.+.++++=||.-.
T Consensus 215 ~~~~~~Fl~~n~l~~iiR~He~~ 237 (303)
T PTZ00239 215 AKVTKEFCRLNDLTLICRAHQLV 237 (303)
T ss_pred HHHHHHHHHHCCCcEEEEcChhh
Confidence 46889999999999999999854
No 124
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=90.66 E-value=0.4 Score=50.48 Aligned_cols=21 Identities=14% Similarity=0.202 Sum_probs=19.4
Q ss_pred HHHHHHHHHHcCCcEEEEccc
Q 009637 389 RVEMEALLYSYGVDIVFNGHV 409 (530)
Q Consensus 389 r~~l~~ll~k~~VdlvlsGH~ 409 (530)
.+.++..|++++.++++=||.
T Consensus 273 ~~~~~~FL~~n~l~~IIRsHe 293 (377)
T cd07418 273 PDCTEEFLEKNNLKLIIRSHE 293 (377)
T ss_pred HHHHHHHHHHcCCcEEEECCC
Confidence 468899999999999999999
No 125
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=89.89 E-value=0.46 Score=48.96 Aligned_cols=23 Identities=13% Similarity=0.238 Sum_probs=20.4
Q ss_pred HHHHHHHHHHcCCcEEEEccccC
Q 009637 389 RVEMEALLYSYGVDIVFNGHVHA 411 (530)
Q Consensus 389 r~~l~~ll~k~~VdlvlsGH~H~ 411 (530)
.+++++.+++++.++++=||.-.
T Consensus 231 ~~~~~~Fl~~n~l~~IiR~Hq~v 253 (320)
T PTZ00480 231 QEIVQVFLKKHELDLICRAHQVV 253 (320)
T ss_pred HHHHHHHHHhCCCcEEEEcCccc
Confidence 57888999999999999999855
No 126
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=89.60 E-value=0.52 Score=48.09 Aligned_cols=23 Identities=13% Similarity=0.186 Sum_probs=20.1
Q ss_pred HHHHHHHHHHcCCcEEEEccccC
Q 009637 389 RVEMEALLYSYGVDIVFNGHVHA 411 (530)
Q Consensus 389 r~~l~~ll~k~~VdlvlsGH~H~ 411 (530)
.+++++.+++++.++++=||.-.
T Consensus 224 ~~~~~~Fl~~n~l~~iiR~Hq~~ 246 (294)
T PTZ00244 224 EDIVNDFLDMVDMDLIVRAHQVM 246 (294)
T ss_pred HHHHHHHHHHcCCcEEEEcCccc
Confidence 46788999999999999999854
No 127
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=87.20 E-value=1.7 Score=44.85 Aligned_cols=23 Identities=9% Similarity=0.105 Sum_probs=20.2
Q ss_pred HHHHHHHHHHcCCcEEEEccccC
Q 009637 389 RVEMEALLYSYGVDIVFNGHVHA 411 (530)
Q Consensus 389 r~~l~~ll~k~~VdlvlsGH~H~ 411 (530)
.+++.+.|++.+.++++-||.=.
T Consensus 233 ~~~~~~Fl~~n~l~~iiR~He~~ 255 (316)
T cd07417 233 PDVTKRFLEENNLEYIIRSHEVK 255 (316)
T ss_pred HHHHHHHHHHcCCcEEEECCccc
Confidence 46788999999999999999854
No 128
>KOG4221 consensus Receptor mediating netrin-dependent axon guidance [Signal transduction mechanisms]
Probab=86.60 E-value=2.5 Score=49.97 Aligned_cols=95 Identities=21% Similarity=0.303 Sum_probs=52.7
Q ss_pred CCCCCCceeEEeecCCCCeEEEEEEcCCCccCCCCCCCCCCCC-ccEEEEecCCCCcceEEEEEEEEeeeccccCCcccc
Q 009637 71 VTGFEPEQLSVSLSFNHDSIWITWITGEFQIGDNIKPLDPKTV-ASFVRYGTSRTNLNHEATGHSLVYDQLYPFEGLQNY 149 (530)
Q Consensus 71 ~~~~~P~qi~l~~~~~~~~m~V~W~T~~~~~g~~~~~~~p~~~-~~~V~yg~~~~~~~~~a~g~~~~y~~~~~~~g~~~~ 149 (530)
.++..|++|.|.... .++++|+|.+.... +. ....-|-....++......+... ..|
T Consensus 614 ~PsaPP~Nl~lev~s-StsVrVsW~pP~~~-----------t~ng~itgYkIRy~~~~~~~~~~~t~------v~~---- 671 (1381)
T KOG4221|consen 614 VPSAPPQNLSLEVVS-STSVRVSWLPPPSE-----------TQNGQITGYKIRYRKLSREDEVNETV------VKG---- 671 (1381)
T ss_pred CCCCCCcceEEEecC-CCeEEEEccCCCcc-----------cccceEEEEEEEecccCcccccceee------ccc----
Confidence 566678889887655 89999999885431 11 12222332221111111111100 001
Q ss_pred ccCeEEEEEeCCCCCCCEEEEEEeeCC---CCCCCceeEEEcCC
Q 009637 150 TSGIIHHVRLTGLEPNNKYYYQCGDPS---IPAMSDVYYFRTLP 190 (530)
Q Consensus 150 ~~~~~h~v~l~gL~P~T~Y~Yrvg~~~---~~~~S~~~~F~T~p 190 (530)
....-.+++|+|+|.|.+||..-+ .+..|++.++.|+-
T Consensus 672 ---n~~~~l~~~Lep~T~Y~vrIsa~t~nGtGpaS~w~~aeT~~ 712 (1381)
T KOG4221|consen 672 ---NTTQYLFNGLEPNTQYRVRISAMTVNGTGPASEWVSAETPE 712 (1381)
T ss_pred ---chhhhHhhcCCCCceEEEEEEEeccCCCCCcccceeccCcc
Confidence 111123467999999999996432 23678889998864
No 129
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=86.05 E-value=1.7 Score=44.72 Aligned_cols=21 Identities=10% Similarity=0.230 Sum_probs=19.1
Q ss_pred HHHHHHHHHHcCCcEEEEccc
Q 009637 389 RVEMEALLYSYGVDIVFNGHV 409 (530)
Q Consensus 389 r~~l~~ll~k~~VdlvlsGH~ 409 (530)
.+++++.+++++.++++=||.
T Consensus 242 ~~~~~~Fl~~n~l~~iiRgHe 262 (311)
T cd07419 242 PDRVHRFLEENDLQMIIRAHE 262 (311)
T ss_pred HHHHHHHHHHCCCeEEEEech
Confidence 468889999999999999997
No 130
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=85.31 E-value=6.5 Score=44.84 Aligned_cols=38 Identities=29% Similarity=0.471 Sum_probs=31.3
Q ss_pred EEEEEeCCCCCCCEEEEEEeeCC---CCCCCceeEEEcCCC
Q 009637 154 IHHVRLTGLEPNNKYYYQCGDPS---IPAMSDVYYFRTLPA 191 (530)
Q Consensus 154 ~h~v~l~gL~P~T~Y~Yrvg~~~---~~~~S~~~~F~T~p~ 191 (530)
..+|+|+||+|||.|-+||.... -+..|....|.|.+.
T Consensus 497 ~~~~ti~gL~p~t~YvfqVRarT~aG~G~~S~~~~fqT~~~ 537 (996)
T KOG0196|consen 497 TTTATITGLKPGTVYVFQVRARTAAGYGPYSGKHEFQTLPS 537 (996)
T ss_pred cceEEeeccCCCcEEEEEEEEecccCCCCCCCceeeeecCc
Confidence 35789999999999999996432 347889999999886
No 131
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=84.25 E-value=11 Score=29.01 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=18.6
Q ss_pred EEEEEeCCCCCCCEEEEEEeeC
Q 009637 154 IHHVRLTGLEPNNKYYYQCGDP 175 (530)
Q Consensus 154 ~h~v~l~gL~P~T~Y~Yrvg~~ 175 (530)
..++.|.+|.|+++|.++|..-
T Consensus 56 ~~~~~i~~l~p~~~Y~~~v~a~ 77 (93)
T cd00063 56 ETSYTLTGLKPGTEYEFRVRAV 77 (93)
T ss_pred ccEEEEccccCCCEEEEEEEEE
Confidence 4678889999999999999654
No 132
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.31 E-value=2 Score=38.92 Aligned_cols=41 Identities=24% Similarity=0.429 Sum_probs=32.2
Q ss_pred HHHHHHHHHcCCcEEEEccccCceeeeecccCccCCCCcEEEEeCCCcc
Q 009637 390 VEMEALLYSYGVDIVFNGHVHAYERSNRVFNYTLDPCGPVHITIGDGGN 438 (530)
Q Consensus 390 ~~l~~ll~k~~VdlvlsGH~H~yeR~~pv~~~~~~~~G~vyIv~G~gG~ 438 (530)
+.+.-|-++.+||+.+.||+|.++... -+|-.||..|++-.
T Consensus 97 ~sL~~LaRqldvDILl~G~Th~f~Aye--------~eg~ffvnPGSaTG 137 (183)
T KOG3325|consen 97 ESLALLARQLDVDILLTGHTHKFEAYE--------HEGKFFVNPGSATG 137 (183)
T ss_pred HHHHHHHHhcCCcEEEeCCceeEEEEE--------eCCcEEeCCCcccC
Confidence 356666778899999999999998874 47888887776543
No 133
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=80.21 E-value=0.89 Score=43.60 Aligned_cols=83 Identities=12% Similarity=0.279 Sum_probs=42.1
Q ss_pred EEEEccCCCCCCh--HHHHHHH----H-hCCCCEEEEcCccccccccccCCCCCcccccCCCCCCccccchHHH---HHH
Q 009637 201 IAIVGDLGLTYNT--TCTINHM----S-SNEPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQPRW---DYW 270 (530)
Q Consensus 201 f~v~gD~g~~~~~--~~~~~~l----~-~~~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~~~w---d~~ 270 (530)
|++++|.+...+. .+.++++ . +.+|+.+|++|+++.......... .....+.... ..+
T Consensus 1 Iv~~Sg~~~~~~~~~~~~L~~~l~~~~~~~~p~~lIl~G~fi~~~~~~~~~~------------~~~~~~~~~~~~~~~~ 68 (209)
T PF04042_consen 1 IVFASGPFLDSDNLSLEPLRDLLSGVEDASKPDVLILMGPFIDSPHPYISSG------------SVPDSYSFEEDFLKEL 68 (209)
T ss_dssp EEEEES--CTTT-HHHHHHHHHHHCCCHCTTECEEEEES-SCBTTSHHHHHT---------------HHCCHHHHHHHHC
T ss_pred CEEEecCccCCCHhHHHHHHHHHHhccccCCCcEEEEeCCCcCccccccccc------------cccccccccHHHHHHH
Confidence 6788998887432 2233333 3 457999999999996432110000 0000111111 222
Q ss_pred HHHHHHhhhcCCeEEccCCcccccc
Q 009637 271 GRFMQNLVSKVPIMVVEGNHEIEAQ 295 (530)
Q Consensus 271 ~~~l~~l~~~vP~~~v~GNHD~~~~ 295 (530)
.+.+..+...++++.+||+||....
T Consensus 69 ~~~~~~i~~~~~vvlvPg~~D~~~~ 93 (209)
T PF04042_consen 69 DSFLESILPSTQVVLVPGPNDPTSS 93 (209)
T ss_dssp HHHHCCCHCCSEEEEE--TTCTT-S
T ss_pred HHHHhhcccccEEEEeCCCcccccc
Confidence 3445556678999999999998643
No 134
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=78.04 E-value=14 Score=27.40 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=19.0
Q ss_pred EEEEEeCCCCCCCEEEEEEeeC
Q 009637 154 IHHVRLTGLEPNNKYYYQCGDP 175 (530)
Q Consensus 154 ~h~v~l~gL~P~T~Y~Yrvg~~ 175 (530)
-+.+.|.+|+|+++|.++|..-
T Consensus 56 ~~~~~i~~L~~~~~Y~v~v~a~ 77 (83)
T smart00060 56 STSYTLTGLKPGTEYEFRVRAV 77 (83)
T ss_pred ccEEEEeCcCCCCEEEEEEEEE
Confidence 4678899999999999998754
No 135
>KOG3513 consensus Neural cell adhesion molecule L1 [Signal transduction mechanisms]
Probab=71.94 E-value=20 Score=42.36 Aligned_cols=92 Identities=24% Similarity=0.273 Sum_probs=51.1
Q ss_pred CCceeEEeecCCCCeEEEEEEcCCCccCCCCCCCCCCCCccEEEEecCCCCcceEEEEEEEEeeeccccCCccccccCeE
Q 009637 75 EPEQLSVSLSFNHDSIWITWITGEFQIGDNIKPLDPKTVASFVRYGTSRTNLNHEATGHSLVYDQLYPFEGLQNYTSGII 154 (530)
Q Consensus 75 ~P~qi~l~~~~~~~~m~V~W~T~~~~~g~~~~~~~p~~~~~~V~yg~~~~~~~~~a~g~~~~y~~~~~~~g~~~~~~~~~ 154 (530)
+|..+.+- +.+.++|.|+|.......|- ...=.|+|-...+.. +..... ...+-.
T Consensus 822 ap~~~~~~-~~s~s~~~v~W~~~~~~nG~--------l~gY~v~Y~~~~~~~-----~~~~~~-----------~i~~~~ 876 (1051)
T KOG3513|consen 822 APTKLSAK-PLSSSEVNLSWKPPLWDNGK--------LTGYEVKYWKINEKE-----GSLSRV-----------QIAGNR 876 (1051)
T ss_pred CCccceee-cccCceEEEEecCcCccCCc--------cceeEEEEEEcCCCc-----ccccce-----------eecCCc
Confidence 45555442 33468999999664332221 123568887776543 111111 112344
Q ss_pred EEEEeCCCCCCCEEEEEEeeCC---CCCCCceeEEEcCCC
Q 009637 155 HHVRLTGLEPNNKYYYQCGDPS---IPAMSDVYYFRTLPA 191 (530)
Q Consensus 155 h~v~l~gL~P~T~Y~Yrvg~~~---~~~~S~~~~F~T~p~ 191 (530)
-.++|+||+|+|.|++.|.+-+ .+-.|...+-+|.+.
T Consensus 877 ~~~~ltgL~~~T~Y~~~vrA~nsaG~Gp~s~~~~~tt~k~ 916 (1051)
T KOG3513|consen 877 TSWRLTGLEPNTKYRFYVRAYTSAGGGPASSEENVTTKKA 916 (1051)
T ss_pred ceEeeeCCCCCceEEEEEEEecCCCCCCCccceeccccCC
Confidence 5788999999999999886422 123344444455443
No 136
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=64.35 E-value=47 Score=33.76 Aligned_cols=80 Identities=13% Similarity=0.213 Sum_probs=50.2
Q ss_pred CeEEEEEccCCCCCChHHHHHHHHh------------CCCCEEEEcCccccccccccCCCCCcccccCCCCCCccccchH
Q 009637 198 PKRIAIVGDLGLTYNTTCTINHMSS------------NEPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQP 265 (530)
Q Consensus 198 ~~rf~v~gD~g~~~~~~~~~~~l~~------------~~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~~ 265 (530)
..+|+++||.+... ..++++|.+ ..|-.+|+.|+++..-.. .+. ...+.|..
T Consensus 27 ~~~~VilSDV~LD~--p~tl~~L~kvf~~y~~~~~~~~~P~~fVL~GnF~S~p~~--~~~------------~~~~~yk~ 90 (291)
T PTZ00235 27 RHNWIIMHDVYLDS--PYTFEVLDKMLSLYVNTYPENELPVGFIFMGDFISLKFD--YNR------------NFHKVYIK 90 (291)
T ss_pred ceEEEEEEeeccCC--HHHHHHHHHHHHHhhccCcccCCCeEEEEecCccCCccc--CCC------------CchHHHHH
Confidence 46999999999863 334433321 138899999999853211 000 12234566
Q ss_pred HHHHHHH-HHH---HhhhcCCeEEccCCcccc
Q 009637 266 RWDYWGR-FMQ---NLVSKVPIMVVEGNHEIE 293 (530)
Q Consensus 266 ~wd~~~~-~l~---~l~~~vP~~~v~GNHD~~ 293 (530)
..|.+.. .+. .|..+.-++.|||-.|-.
T Consensus 91 ~Fd~La~llls~fp~L~~~s~fVFVPGpnDPw 122 (291)
T PTZ00235 91 GFEKLSVMLISKFKLILEHCYLIFIPGINDPC 122 (291)
T ss_pred HHHHHHHHHHHhChHHHhcCeEEEECCCCCCC
Confidence 6666654 233 356778899999999974
No 137
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=63.54 E-value=4.1 Score=28.86 Aligned_cols=31 Identities=29% Similarity=0.312 Sum_probs=18.7
Q ss_pred cCchhhHHHHHHhhhhhhhhcCCCCCCCCCC
Q 009637 11 MGGIFLFFIFLLSPLDIRATNANIPSTLDGP 41 (530)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (530)
|+||+...||++..++.+--++.|-.+.-|-
T Consensus 1 MkKi~~~~i~~~~~~L~aCQaN~iRDvqGGt 31 (46)
T PF02402_consen 1 MKKIIFIGIFLLTMLLAACQANYIRDVQGGT 31 (46)
T ss_pred CcEEEEeHHHHHHHHHHHhhhcceecCCCce
Confidence 7888888887777444433335555554443
No 138
>KOG3947 consensus Phosphoesterases [General function prediction only]
Probab=63.45 E-value=16 Score=36.72 Aligned_cols=31 Identities=19% Similarity=0.282 Sum_probs=22.6
Q ss_pred eEEEEEccCCCCCChHHHHHHHH-hCCCCEEEEcCccc
Q 009637 199 KRIAIVGDLGLTYNTTCTINHMS-SNEPDLVLLVGDVT 235 (530)
Q Consensus 199 ~rf~v~gD~g~~~~~~~~~~~l~-~~~pDfvl~~GDl~ 235 (530)
.||+.++|.|.... .+. -..-|+.+++||+.
T Consensus 62 ~r~VcisdtH~~~~------~i~~~p~gDvlihagdfT 93 (305)
T KOG3947|consen 62 ARFVCISDTHELTF------DINDIPDGDVLIHAGDFT 93 (305)
T ss_pred eEEEEecCcccccC------ccccCCCCceEEeccCCc
Confidence 69999999996421 122 23568999999998
No 139
>KOG4221 consensus Receptor mediating netrin-dependent axon guidance [Signal transduction mechanisms]
Probab=57.97 E-value=1.1e+02 Score=36.87 Aligned_cols=37 Identities=22% Similarity=0.178 Sum_probs=28.3
Q ss_pred EEEEEeCCCCCCCEEEEEEeeCCC---CCCCceeEEEcCC
Q 009637 154 IHHVRLTGLEPNNKYYYQCGDPSI---PAMSDVYYFRTLP 190 (530)
Q Consensus 154 ~h~v~l~gL~P~T~Y~Yrvg~~~~---~~~S~~~~F~T~p 190 (530)
-++.+|.||+|.|.|.|||...+. +.-|+..+|+|+-
T Consensus 573 ~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~Tls 612 (1381)
T KOG4221|consen 573 ATEYTINGLEKYTEYSIRVVAYNSAGSGVSSADITVRTLS 612 (1381)
T ss_pred ccEEEeecCCCccceEEEEEEecCCCCCCCCCceEEEecc
Confidence 467888999999999999975432 2456778888864
No 140
>KOG4258 consensus Insulin/growth factor receptor (contains protein kinase domain) [Signal transduction mechanisms]
Probab=56.30 E-value=48 Score=38.35 Aligned_cols=123 Identities=23% Similarity=0.246 Sum_probs=71.2
Q ss_pred CCCceeEEeecC-CCCeEEEEEEcCCCccCCCCCCCCCCCCccEEEEecCCCCcceE-----EEEEE--EEeeeccccCC
Q 009637 74 FEPEQLSVSLSF-NHDSIWITWITGEFQIGDNIKPLDPKTVASFVRYGTSRTNLNHE-----ATGHS--LVYDQLYPFEG 145 (530)
Q Consensus 74 ~~P~qi~l~~~~-~~~~m~V~W~T~~~~~g~~~~~~~p~~~~~~V~yg~~~~~~~~~-----a~g~~--~~y~~~~~~~g 145 (530)
..+.-++++... +.+++.++|....+. +.. .-..-.+.|...+...... |-|.. ......+| ++
T Consensus 487 Ce~~~l~~~~~~~~~dsi~lrW~~~~~~-d~r------~llg~~~~yKEaP~qNvT~~dg~~aCg~~~W~~~~v~~~-~~ 558 (1025)
T KOG4258|consen 487 CEDLVLQFSSTVTSADSILLRWERYQPP-DMR------DLLGFLLHYKEAPFQNVTEEDGRDACGSNSWNVVDVDPP-DL 558 (1025)
T ss_pred cccceeeeeeEEeecceeEEEecccCCc-chh------hhheeeEeeccCCccccceecCccccccCcceEEeccCC-cC
Confidence 456777777664 358999999886532 000 0122456677776432211 21211 11222122 22
Q ss_pred ccccccCeEEEEEeCCCCCCCEEEEEEeeCC-------CCCCCceeEEEcCCCCCCCCCCeEEEEEccCC
Q 009637 146 LQNYTSGIIHHVRLTGLEPNNKYYYQCGDPS-------IPAMSDVYYFRTLPASGPQSYPKRIAIVGDLG 208 (530)
Q Consensus 146 ~~~~~~~~~h~v~l~gL~P~T~Y~Yrvg~~~-------~~~~S~~~~F~T~p~~~~~~~~~rf~v~gD~g 208 (530)
.-+ ++..-...|.||+|.|.|.|-|..-. ..+.|++..++|.|...+. |+.++..++..
T Consensus 559 ~p~--~~~~~~~~l~~LkP~TqYAvfVkT~t~t~~~~~~~A~S~I~YvqT~~~~Psp--Pl~~ls~snsS 624 (1025)
T KOG4258|consen 559 IPN--DGTHPGFLLDGLKPWTQYAVFVKTLTVTEAHEAYEAKSKIGYVQTLPDIPSP--PLDVLSKSNSS 624 (1025)
T ss_pred CCc--cccccceehhcCCccceeEEEEeeeehhhhccccccccceEEEEecCCCCCC--cchhhhccCcc
Confidence 222 22333688999999999999885331 1278999999999865433 67777776654
No 141
>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R ....
Probab=44.25 E-value=1.1e+02 Score=25.66 Aligned_cols=75 Identities=19% Similarity=0.270 Sum_probs=42.9
Q ss_pred CCceeEEeecCCCCeEEEEEEcCCCccCCCCCCCCCCCCccEEEEecCCCCcceEEEEEEEEeeeccccCCccccccCeE
Q 009637 75 EPEQLSVSLSFNHDSIWITWITGEFQIGDNIKPLDPKTVASFVRYGTSRTNLNHEATGHSLVYDQLYPFEGLQNYTSGII 154 (530)
Q Consensus 75 ~P~qi~l~~~~~~~~m~V~W~T~~~~~g~~~~~~~p~~~~~~V~yg~~~~~~~~~a~g~~~~y~~~~~~~g~~~~~~~~~ 154 (530)
.|+.|.+..-. -...+.|.-+.. .|....=.|+|...+...+..+.+=... .-
T Consensus 24 ~P~nv~~~s~n--f~~iL~W~~~~~---------~~~~~~ytVq~~~~~~~~W~~v~~C~~i----------------~~ 76 (107)
T PF01108_consen 24 APQNVTVDSVN--FKHILRWDPGPG---------SPPNVTYTVQYKKYGSSSWKDVPGCQNI----------------TE 76 (107)
T ss_dssp SCEEEEEEEET--TEEEEEEEESTT---------SSSTEEEEEEEEESSTSCEEEECCEEEE----------------SS
T ss_pred CCCeeEEEEEC--CceEEEeCCCCC---------CCCCeEEEEEEEecCCcceeeccceecc----------------cc
Confidence 48888876543 458889987432 1222345688884444444333211100 11
Q ss_pred EEEEeCCCC--CCCEEEEEEeeCC
Q 009637 155 HHVRLTGLE--PNNKYYYQCGDPS 176 (530)
Q Consensus 155 h~v~l~gL~--P~T~Y~Yrvg~~~ 176 (530)
++..|+... +...|+.||.+..
T Consensus 77 ~~Cdlt~~~~~~~~~Y~~rV~A~~ 100 (107)
T PF01108_consen 77 TSCDLTDETSDPSESYYARVRAEV 100 (107)
T ss_dssp SEEECTTCCTTTTSEEEEEEEEEE
T ss_pred cceeCcchhhcCcCCEEEEEEEEe
Confidence 466677644 7888999997654
No 142
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=39.40 E-value=9.9 Score=33.72 Aligned_cols=20 Identities=40% Similarity=0.544 Sum_probs=0.0
Q ss_pred cCchhhHHHHHHhhhhhhhh
Q 009637 11 MGGIFLFFIFLLSPLDIRAT 30 (530)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~ 30 (530)
|++|+|.++|||+.++.++.
T Consensus 1 MKK~ll~~~lllss~sfaA~ 20 (126)
T PF09403_consen 1 MKKILLLGMLLLSSISFAAT 20 (126)
T ss_dssp --------------------
T ss_pred ChHHHHHHHHHHHHHHHHcc
Confidence 88999888888777776544
No 143
>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]
Probab=38.27 E-value=32 Score=35.77 Aligned_cols=23 Identities=13% Similarity=0.244 Sum_probs=19.4
Q ss_pred HHHHHHHHHHcCCcEEEEccccC
Q 009637 389 RVEMEALLYSYGVDIVFNGHVHA 411 (530)
Q Consensus 389 r~~l~~ll~k~~VdlvlsGH~H~ 411 (530)
.+.+++++.+.++|+++-+|.=.
T Consensus 233 ~~~v~~f~~~~~ldlivRaHqvv 255 (331)
T KOG0374|consen 233 PAVVEDFCKKLDLDLIVRAHQVV 255 (331)
T ss_pred HHHHHHHHHHhCcceEEEcCccc
Confidence 46788899999999999999643
No 144
>PF07353 Uroplakin_II: Uroplakin II; InterPro: IPR009952 This family contains uroplakin II, which is approximately 180 residues long and seems to be restricted to mammals. Uroplakin II is an integral membrane protein, and is one of the components of the apical plaques of mammalian urothelium formed by the asymmetric unit membrane - this is believed to play a role in strengthening the urothelial apical surface to prevent the cells from rupturing during bladder distension [].; GO: 0016044 cellular membrane organization, 0030176 integral to endoplasmic reticulum membrane
Probab=38.05 E-value=35 Score=31.31 Aligned_cols=38 Identities=24% Similarity=0.358 Sum_probs=22.8
Q ss_pred EEEEEeCCCCCCCEEEEE--EeeCCCCCCCceeEEEcCCC
Q 009637 154 IHHVRLTGLEPNNKYYYQ--CGDPSIPAMSDVYYFRTLPA 191 (530)
Q Consensus 154 ~h~v~l~gL~P~T~Y~Yr--vg~~~~~~~S~~~~F~T~p~ 191 (530)
...-++++|.|||+||.+ |.++....-|.+..-.|.|.
T Consensus 101 lsaYqVtNL~pGTkY~isY~VtkgtstESS~~i~msT~n~ 140 (184)
T PF07353_consen 101 LSAYQVTNLQPGTKYYISYLVTKGTSTESSNEIPMSTLNR 140 (184)
T ss_pred ceeEEeeccCCCcEEEEEEEEecCccceecceeccccccc
Confidence 344467999999999755 55443222334455555554
No 145
>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=36.16 E-value=65 Score=31.94 Aligned_cols=34 Identities=18% Similarity=0.287 Sum_probs=20.2
Q ss_pred EEEEccCCCCCChHHHHHHHH--hCCC-CEEEEcCcccc
Q 009637 201 IAIVGDLGLTYNTTCTINHMS--SNEP-DLVLLVGDVTY 236 (530)
Q Consensus 201 f~v~gD~g~~~~~~~~~~~l~--~~~p-Dfvl~~GDl~Y 236 (530)
+.+.||+|.. ....++-+. ..-| .=-|++||+++
T Consensus 45 vtvcGDIHGQ--f~Dllelf~igG~~~~t~YLFLGDyVD 81 (303)
T KOG0372|consen 45 VTVCGDIHGQ--FYDLLELFRIGGDVPETNYLFLGDYVD 81 (303)
T ss_pred cEEeecccch--HHHHHHHHHhCCCCCCCceEeecchhc
Confidence 5689999974 333333222 1122 34688999995
No 146
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=31.48 E-value=57 Score=28.12 Aligned_cols=23 Identities=35% Similarity=0.648 Sum_probs=20.2
Q ss_pred CeEEEEEeCCCCCCCEEEEEEee
Q 009637 152 GIIHHVRLTGLEPNNKYYYQCGD 174 (530)
Q Consensus 152 ~~~h~v~l~gL~P~T~Y~Yrvg~ 174 (530)
+-++++.|.++.+|+.|.|||..
T Consensus 48 ~gvW~~~v~~~~~g~~Y~y~v~g 70 (119)
T cd02852 48 GDVWHVFVEGLKPGQLYGYRVDG 70 (119)
T ss_pred CCEEEEEECCCCCCCEEEEEECC
Confidence 35788999999999999999973
No 147
>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]
Probab=30.92 E-value=55 Score=32.67 Aligned_cols=34 Identities=24% Similarity=0.336 Sum_probs=22.0
Q ss_pred EEEEccCCCCCChHHHHHHHH--hCCCCE-EEEcCcccc
Q 009637 201 IAIVGDLGLTYNTTCTINHMS--SNEPDL-VLLVGDVTY 236 (530)
Q Consensus 201 f~v~gD~g~~~~~~~~~~~l~--~~~pDf-vl~~GDl~Y 236 (530)
+.+.||.|.. ....++-+. ...||. .++.||.+.
T Consensus 62 vtvcGDvHGq--f~dl~ELfkiGG~~pdtnylfmGDyvd 98 (319)
T KOG0371|consen 62 VTVCGDVHGQ--FHDLIELFKIGGLAPDTNYLFMGDYVD 98 (319)
T ss_pred eEEecCcchh--HHHHHHHHHccCCCCCcceeeeeeecc
Confidence 6789999964 333444332 345664 678999995
No 148
>COG3065 Slp Starvation-inducible outer membrane lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=30.16 E-value=34 Score=32.09 Aligned_cols=31 Identities=29% Similarity=0.084 Sum_probs=20.6
Q ss_pred cccCchhhHHHHHH-hhhhhhhhcCCCCCCCCCCC
Q 009637 9 YRMGGIFLFFIFLL-SPLDIRATNANIPSTLDGPF 42 (530)
Q Consensus 9 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 42 (530)
.+|++.+-.+|..| ++|+.|++ ||..|+|+.
T Consensus 3 ~~m~~~~~~l~~~laflLsgC~t---iPk~l~g~~ 34 (191)
T COG3065 3 SQMNMKKGALIGTLAFLLSGCVT---IPKALKGES 34 (191)
T ss_pred hHhhhHHHHHHHHHHHHHhhccc---CChhhcCCC
Confidence 35664444444444 56777777 999999877
No 149
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=30.13 E-value=64 Score=27.05 Aligned_cols=23 Identities=22% Similarity=0.462 Sum_probs=19.9
Q ss_pred CeEEEEEeCCCCCCCEEEEEEee
Q 009637 152 GIIHHVRLTGLEPNNKYYYQCGD 174 (530)
Q Consensus 152 ~~~h~v~l~gL~P~T~Y~Yrvg~ 174 (530)
+-+.++.+.++.+|+.|.|+|..
T Consensus 44 ~GvW~~~v~~~~~g~~Y~y~i~g 66 (103)
T cd02856 44 GGVWHGFLPGIKAGQRYGFRVHG 66 (103)
T ss_pred CCEEEEEECCCCCCCEEEEEECC
Confidence 35788999999999999999964
No 150
>PRK13859 type IV secretion system lipoprotein VirB7; Provisional
Probab=29.37 E-value=51 Score=24.26 Aligned_cols=15 Identities=20% Similarity=0.171 Sum_probs=9.3
Q ss_pred CCCCCCCCCCc--cccC
Q 009637 34 IPSTLDGPFEP--ETVP 48 (530)
Q Consensus 34 ~~~~~~~~~~p--~~~~ 48 (530)
-.-|-+||.-| |++|
T Consensus 20 ~lAtckGpiFpLNVgrW 36 (55)
T PRK13859 20 TLASCKGPIFPLNVGRW 36 (55)
T ss_pred ccccccCCccccccccc
Confidence 33456788777 5555
No 151
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=28.72 E-value=39 Score=23.06 Aligned_cols=17 Identities=35% Similarity=0.397 Sum_probs=11.6
Q ss_pred cCchhhHHHHHHhhhhh
Q 009637 11 MGGIFLFFIFLLSPLDI 27 (530)
Q Consensus 11 ~~~~~~~~~~~~~~~~~ 27 (530)
|+.+.+.++|+|++|..
T Consensus 1 Mk~l~~a~~l~lLal~~ 17 (36)
T PF08194_consen 1 MKCLSLAFALLLLALAA 17 (36)
T ss_pred CceeHHHHHHHHHHHHh
Confidence 66677777777777444
No 152
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=27.54 E-value=71 Score=26.56 Aligned_cols=24 Identities=21% Similarity=0.163 Sum_probs=20.5
Q ss_pred CeEEEEEeCCCCCCCEEEEEEeeC
Q 009637 152 GIIHHVRLTGLEPNNKYYYQCGDP 175 (530)
Q Consensus 152 ~~~h~v~l~gL~P~T~Y~Yrvg~~ 175 (530)
+-++++.+.++.+|+.|.|||...
T Consensus 46 ~gvw~~~v~~~~~g~~Y~y~i~~~ 69 (100)
T cd02860 46 NGVWSVTLDGDLEGYYYLYEVKVY 69 (100)
T ss_pred CCEEEEEeCCccCCcEEEEEEEEe
Confidence 357889999999999999999743
No 153
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=27.52 E-value=40 Score=28.35 Aligned_cols=9 Identities=44% Similarity=0.729 Sum_probs=3.8
Q ss_pred hhhHHHHHH
Q 009637 14 IFLFFIFLL 22 (530)
Q Consensus 14 ~~~~~~~~~ 22 (530)
.+|++.|||
T Consensus 5 ~~llL~l~L 13 (95)
T PF07172_consen 5 AFLLLGLLL 13 (95)
T ss_pred HHHHHHHHH
Confidence 344444443
No 154
>PRK09810 entericidin A; Provisional
Probab=26.84 E-value=38 Score=23.90 Aligned_cols=18 Identities=11% Similarity=0.148 Sum_probs=11.1
Q ss_pred cCchhhHHHHHHhhhhhh
Q 009637 11 MGGIFLFFIFLLSPLDIR 28 (530)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~ 28 (530)
|++++++.+++++.|..|
T Consensus 2 Mkk~~~l~~~~~~~L~aC 19 (41)
T PRK09810 2 MKRLIVLVLLASTLLTGC 19 (41)
T ss_pred hHHHHHHHHHHHHHHhhh
Confidence 677776665555555555
No 155
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=26.75 E-value=76 Score=25.55 Aligned_cols=21 Identities=19% Similarity=0.387 Sum_probs=18.3
Q ss_pred eEEEEEeCCCCCCCEEEEEEee
Q 009637 153 IIHHVRLTGLEPNNKYYYQCGD 174 (530)
Q Consensus 153 ~~h~v~l~gL~P~T~Y~Yrvg~ 174 (530)
-++++.+.++ +|..|.|++..
T Consensus 40 G~W~~~v~~~-~g~~Y~y~v~~ 60 (85)
T cd02853 40 GWFEAEVPGA-AGTRYRYRLDD 60 (85)
T ss_pred cEEEEEeCCC-CCCeEEEEECC
Confidence 4678899999 99999999973
No 156
>TIGR00156 conserved hypothetical protein TIGR00156. As of the last revision, this family consists only of two proteins from Escherichia coli and one from the related species Haemophilus influenzae.
Probab=25.47 E-value=67 Score=28.49 Aligned_cols=19 Identities=5% Similarity=-0.169 Sum_probs=12.4
Q ss_pred cCchhhHHHHHHhhhhhhhh
Q 009637 11 MGGIFLFFIFLLSPLDIRAT 30 (530)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~ 30 (530)
|+|++|..+|+ +++.++++
T Consensus 1 MKK~~~~~~~~-l~s~~~~a 19 (126)
T TIGR00156 1 MKFQAIVLASA-LVMPYALA 19 (126)
T ss_pred CchHHHHHHHH-HHhhHHHH
Confidence 88988888774 33444444
No 157
>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=23.83 E-value=69 Score=26.60 Aligned_cols=20 Identities=25% Similarity=0.468 Sum_probs=15.5
Q ss_pred EEEEeCCCCCCCEEEEEEee
Q 009637 155 HHVRLTGLEPNNKYYYQCGD 174 (530)
Q Consensus 155 h~v~l~gL~P~T~Y~Yrvg~ 174 (530)
-.+.|.+|+|+|.|..+|..
T Consensus 67 ~~~~l~~L~p~t~YCv~V~~ 86 (106)
T PF09294_consen 67 SSVTLSDLKPGTNYCVSVQA 86 (106)
T ss_dssp EEEEEES--TTSEEEEEEEE
T ss_pred CEEEEeCCCCCCCEEEEEEE
Confidence 35689999999999999976
No 158
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=23.15 E-value=85 Score=30.35 Aligned_cols=29 Identities=21% Similarity=0.261 Sum_probs=19.6
Q ss_pred cCCcEEEEccccCceeeeecccCccCCCCcEEEEeCC
Q 009637 399 YGVDIVFNGHVHAYERSNRVFNYTLDPCGPVHITIGD 435 (530)
Q Consensus 399 ~~VdlvlsGH~H~yeR~~pv~~~~~~~~G~vyIv~G~ 435 (530)
.+++++++||+|.-.... .++.+.|-+|+
T Consensus 178 ~~~~~vv~GHTh~~~~~~--------~~~~i~IDtGs 206 (218)
T PRK09968 178 NGADYFIFGHMMFDNIQT--------FANQIYIDTGS 206 (218)
T ss_pred CCCCEEEECCCCcCccee--------ECCEEEEECCC
Confidence 467999999999743221 13467777775
No 159
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=23.11 E-value=95 Score=30.27 Aligned_cols=34 Identities=18% Similarity=0.343 Sum_probs=20.1
Q ss_pred EEEEccCCCCCChHHHHHHHHh--CCCCE-EEEcCcccc
Q 009637 201 IAIVGDLGLTYNTTCTINHMSS--NEPDL-VLLVGDVTY 236 (530)
Q Consensus 201 f~v~gD~g~~~~~~~~~~~l~~--~~pDf-vl~~GDl~Y 236 (530)
+-+.||+|.. ....++-... .-||- -++.||+++
T Consensus 48 VTvCGDIHGQ--FyDL~eLFrtgG~vP~tnYiFmGDfVD 84 (306)
T KOG0373|consen 48 VTVCGDIHGQ--FYDLLELFRTGGQVPDTNYIFMGDFVD 84 (306)
T ss_pred eeEeeccchh--HHHHHHHHHhcCCCCCcceEEeccccc
Confidence 5589999964 2333332221 23553 578999995
No 160
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=23.01 E-value=2.4e+02 Score=28.24 Aligned_cols=75 Identities=16% Similarity=0.246 Sum_probs=51.6
Q ss_pred CeEEEEEccCCCCCChHHHHHHHHhCCCCEEEEcCccccccccccCCCCCcccccCCCCCCccccchHHHHHHHHHHHHh
Q 009637 198 PKRIAIVGDLGLTYNTTCTINHMSSNEPDLVLLVGDVTYANLYLTNGTGSDCYSCSFSKTPIHETYQPRWDYWGRFMQNL 277 (530)
Q Consensus 198 ~~rf~v~gD~g~~~~~~~~~~~l~~~~pDfvl~~GDl~Yad~~~~~G~~~~cy~~~~~~~~~~~~y~~~wd~~~~~l~~l 277 (530)
..+|++.+|.+.-. ....++.+.+.+|+.+++.|=.+|--++. -| +...+.-.+.|+.+
T Consensus 176 ~~~i~faSDvqGp~-~~~~l~~i~e~~P~v~ii~GPpty~lg~r-~~-------------------~~~~E~~irNl~~i 234 (304)
T COG2248 176 KSSIVFASDVQGPI-NDEALEFILEKRPDVLIIGGPPTYLLGYR-VG-------------------PKSLEKGIRNLERI 234 (304)
T ss_pred CeEEEEcccccCCC-ccHHHHHHHhcCCCEEEecCCchhHhhhh-cC-------------------hHHHHHHHHHHHHH
Confidence 46899999998553 34578889999999999999999743221 01 11223345667777
Q ss_pred hhcCCeEEccCCcccc
Q 009637 278 VSKVPIMVVEGNHEIE 293 (530)
Q Consensus 278 ~~~vP~~~v~GNHD~~ 293 (530)
....+--.+..-|=..
T Consensus 235 i~~~~~~lViDHHllR 250 (304)
T COG2248 235 IEETNATLVIDHHLLR 250 (304)
T ss_pred HHhCcceEEEeehhhc
Confidence 7777777777777664
No 161
>PRK10301 hypothetical protein; Provisional
Probab=22.29 E-value=1.8e+02 Score=25.61 Aligned_cols=10 Identities=30% Similarity=0.587 Sum_probs=4.4
Q ss_pred CceeEEeecC
Q 009637 76 PEQLSVSLSF 85 (530)
Q Consensus 76 P~qi~l~~~~ 85 (530)
|++|.|.+++
T Consensus 45 P~~V~L~F~e 54 (124)
T PRK10301 45 PQALTLNFSE 54 (124)
T ss_pred CCEEEEEcCC
Confidence 4444444443
No 162
>PRK10301 hypothetical protein; Provisional
Probab=22.00 E-value=5.4e+02 Score=22.53 Aligned_cols=35 Identities=17% Similarity=0.143 Sum_probs=22.6
Q ss_pred eEEEEEeC-CCCCCC-EEEEEEeeCCCCCCCceeEEE
Q 009637 153 IIHHVRLT-GLEPNN-KYYYQCGDPSIPAMSDVYYFR 187 (530)
Q Consensus 153 ~~h~v~l~-gL~P~T-~Y~Yrvg~~~~~~~S~~~~F~ 187 (530)
....+.|. .|.||+ +..||+-+.+.-..+..|+|+
T Consensus 86 ~~~~v~l~~~L~~G~YtV~Wrvvs~DGH~~~G~~~F~ 122 (124)
T PRK10301 86 KQLIVPLADSLKPGTYTVDWHVVSVDGHKTKGHYTFS 122 (124)
T ss_pred cEEEEECCCCCCCccEEEEEEEEecCCCccCCeEEEE
Confidence 34567775 688885 246787766544566677775
No 163
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=21.76 E-value=44 Score=20.93 Aligned_cols=17 Identities=24% Similarity=0.186 Sum_probs=8.2
Q ss_pred cCchhhHHHHHHhhhhhh
Q 009637 11 MGGIFLFFIFLLSPLDIR 28 (530)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~ 28 (530)
|++|++.++.++ .|+.|
T Consensus 7 mKkil~~l~a~~-~LagC 23 (25)
T PF08139_consen 7 MKKILFPLLALF-MLAGC 23 (25)
T ss_pred HHHHHHHHHHHH-HHhhc
Confidence 466655544433 34444
Done!