BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009639
         (530 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3MR0|A Chain A, Crystal Structure Of Sensory Box Histidine KinaseRESPONSE
           REGULATOR From Burkholderia Thailandensis E264
 pdb|3MR0|B Chain B, Crystal Structure Of Sensory Box Histidine KinaseRESPONSE
           REGULATOR From Burkholderia Thailandensis E264
          Length = 142

 Score = 31.2 bits (69), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 45/105 (42%), Gaps = 11/105 (10%)

Query: 381 YELPDEFEGHREWINIGTRYRRIVEPLDIANYYRHLKNEDTG--PYMKRGRPKRYRYTQR 438
           +ELPDE  GHRE I+   R R       +A    HL++ DT    Y  R R   +R+ Q 
Sbjct: 47  HELPDEITGHRESIHPDDRARV------LAALKAHLEHRDTYDVEYRVRTRSGDFRWIQS 100

Query: 439 WLEYALKISAGSSGESCFWARIEDLCLRTINMGLFEDVKEEILSL 483
               AL  SAG       W  I D+  R  +       +EE+  L
Sbjct: 101 -RGQALWNSAGEPYRXVGW--IXDVTDRKRDEDALRVSREELRRL 142


>pdb|2VD2|A Chain A, The Crystal Structure Of Hisg From B. Subtilis
          Length = 214

 Score = 29.6 bits (65), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 5/51 (9%)

Query: 370 IFDEIMEMLKR--YELPDEFEGHREW-INIGTRYRRIV--EPLDIANYYRH 415
           IF+E   +L++  Y LP+EFE  R+  I++     R +  +P+D+  Y  H
Sbjct: 15  IFEEAAGLLRQAGYRLPEEFEDSRKLIIDVPEENLRFILAKPMDVTTYVEH 65


>pdb|3SP1|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase (Cyss) From
           Borrelia Burgdorferi
 pdb|3SP1|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase (Cyss) From
           Borrelia Burgdorferi
          Length = 501

 Score = 28.5 bits (62), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 362 VRRLELAGIFDEIMEMLKRYELPDEFEGHREWINIGTRYRRIVEPLDIANYYRHLKNED 420
           V +L LA IFDEIM +  R E+    + H   + I    + ++E   IA   ++ K  D
Sbjct: 420 VSKLRLAFIFDEIMSLNLREEILKNLQNHD--VVIDENMKALIEERRIAKCEKNFKRAD 476


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.135    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,922,218
Number of Sequences: 62578
Number of extensions: 594604
Number of successful extensions: 1372
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1372
Number of HSP's gapped (non-prelim): 3
length of query: 530
length of database: 14,973,337
effective HSP length: 103
effective length of query: 427
effective length of database: 8,527,803
effective search space: 3641371881
effective search space used: 3641371881
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)