BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009639
         (530 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A6W7G9|ATPB_KINRD ATP synthase subunit beta OS=Kineococcus radiotolerans (strain ATCC
           BAA-149 / DSM 14245 / SRS30216) GN=atpD PE=3 SV=1
          Length = 486

 Score = 40.0 bits (92), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 47/216 (21%), Positives = 82/216 (37%), Gaps = 54/216 (25%)

Query: 261 KGVAHFDNLEGLPLSSNVGAAGLGLVLNNLGLSTRARLCLCAAGELEKQKR-------RN 313
           +G A  D   G P+S  VG A LG V N +G      L L    +LE  +R        N
Sbjct: 83  RGAAVVDT--GAPISVPVGNATLGHVFNAIGEC----LNLEEGEQLEVHERWPIHRKAPN 136

Query: 314 QDKINKKKTDIEKGLLALEGYKTRCEAGRVSYYDALKLSKD------------------- 354
            D++  + T  E G+  ++      + G++  +    + K                    
Sbjct: 137 FDQLESRTTMFETGIKVIDLLTPYVQGGKIGLFGGAGVGKTVLIQEMIQRVAQNHGGVSV 196

Query: 355 -------TDDFNANVRRLELAGIFDEIMEMLKRYELPDEFEGHREWINIGTRYRRIVEPL 407
                  T + N  +  +  AG+FD+   +  + + P            GTR R  +  L
Sbjct: 197 FAGVGERTREGNDLIGEMAEAGVFDKTALVFGQMDEPP-----------GTRLRVALSAL 245

Query: 408 DIANYYRHLKNEDTGPYMKRGRPKRYRYTQRWLEYA 443
            +A Y+R ++N+D   ++       +R+TQ   E +
Sbjct: 246 TMAEYFRDVQNQDVLLFID----NIFRFTQAGSEVS 277


>sp|Q86YC2|PALB2_HUMAN Partner and localizer of BRCA2 OS=Homo sapiens GN=PALB2 PE=1 SV=1
          Length = 1186

 Score = 35.0 bits (79), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 68/144 (47%), Gaps = 6/144 (4%)

Query: 312 RNQDKINKKKTDIEKGLLALEGYKTRCEA-GRVSYYDALKLSKDTDDFNANVRRLELAGI 370
           R+++++   K   EK  + ++G K+R +    +S+ ++  LS D D F A   R  +  +
Sbjct: 541 RSKEEVTSHKYQHEKLFIQVKGKKSRHQKEDSLSWSNSAYLSLDDDAFTAPFHRDGMLSL 600

Query: 371 FDEIMEMLK--RYELPDEFEGHREWINIGTRYRRIVEPLDIANY-YRHLKNEDTGPYMKR 427
             +++  L    ++LPDE  G  +   + +   + VEP +   +  RHLK E +  + + 
Sbjct: 601 -KQLLSFLSITDFQLPDEDFGPLKLEKVKSCSEKPVEPFESKMFGERHLK-EGSCIFPEE 658

Query: 428 GRPKRYRYTQRWLEYALKISAGSS 451
             PKR       LE  L +  G S
Sbjct: 659 LSPKRMDTEMEDLEEDLIVLPGKS 682


>sp|A8G5Y9|PNP_PROM2 Polyribonucleotide nucleotidyltransferase OS=Prochlorococcus
           marinus (strain MIT 9215) GN=pnp PE=3 SV=1
          Length = 721

 Score = 34.7 bits (78), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 61/135 (45%), Gaps = 13/135 (9%)

Query: 208 GDRELVVMKNPDAVLQILFYSSQLSSE--VEGPEIALRSVKDHFNYQSE-LQNLETKGVA 264
           GD ++VV  +PD ++ I   ++QLS +  +E  +    +V +    Q + L++L  K + 
Sbjct: 171 GDLDIVVAGSPDGIVMIEAGANQLSEQDTIEAIDFGYEAVTELIKSQEDLLKDLGIKQIK 230

Query: 265 HFDNLEG--LP--LSSNVGAAGLGLVLNNLGLSTRARLCLCAAGELEKQKRRNQDKINKK 320
             D  E   LP  L  N   A + LVL     S   R       ELEK K   Q KI+  
Sbjct: 231 PSDPEEDKTLPSYLEKNCSKA-IDLVLKKFDQSKEERDL-----ELEKIKTETQSKIDSL 284

Query: 321 KTDIEKGLLALEGYK 335
           K D E  +L  E  K
Sbjct: 285 KDDNEVRVLTSENEK 299


>sp|Q9LNC2|PLA18_ARATH Phospholipase A1-IIalpha OS=Arabidopsis thaliana GN=At1g06250 PE=2
           SV=1
          Length = 423

 Score = 34.3 bits (77), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 26/55 (47%)

Query: 38  ERKQIVFTGHSSAGPIAVLMTVWFLENWENFIKSDPSTSRMPPICVTFGSPLVGD 92
           E   I FTGHS    ++VL     +   +N I  +    ++P     FGSP +GD
Sbjct: 213 EEISITFTGHSLGAVMSVLSAADLVYGKKNNININLQKKQVPITVFAFGSPRIGD 267


>sp|A2BSA7|PNP_PROMS Polyribonucleotide nucleotidyltransferase OS=Prochlorococcus
           marinus (strain AS9601) GN=pnp PE=3 SV=1
          Length = 721

 Score = 33.9 bits (76), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 11/134 (8%)

Query: 208 GDRELVVMKNPDAVLQILFYSSQLSSE--VEGPEIALRSVKDHFNYQSE-LQNLETKGVA 264
           GD ++VV  +PD ++ I   ++QLS +  +E  +    +V +    Q + LQ+L  K + 
Sbjct: 171 GDLDIVVAGSPDGIVMIEAGANQLSEQDTIEAIDFGYEAVTELIKSQEDLLQDLGIKQIK 230

Query: 265 HFDNLEGLPLSSNVG---AAGLGLVLNNLGLSTRARLCLCAAGELEKQKRRNQDKINKKK 321
             +  E   L S +       + LVL    LS   R       ELEK K   Q KI+  K
Sbjct: 231 PSEPEEDKTLPSYLEKNCTKPIELVLKKFDLSKEERDL-----ELEKIKTETQSKIDSLK 285

Query: 322 TDIEKGLLALEGYK 335
            D +  +L  E  K
Sbjct: 286 DDNQVKVLTSENEK 299


>sp|Q6C457|UTP10_YARLI U3 small nucleolar RNA-associated protein 10 OS=Yarrowia lipolytica
            (strain CLIB 122 / E 150) GN=UTP10 PE=3 SV=1
          Length = 1635

 Score = 33.5 bits (75), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 7/118 (5%)

Query: 121  VLLAPLSSLEPELKTILDFLNPKCTIHIQEPTREASALYVTVMSNASSVASHAACHLMGN 180
            +L+A L+++ P L  +L  + P  T       R+     V V+    +VA    C L GN
Sbjct: 913  LLVAELATVAPTL--VLHSVMPIFTFMGANTLRQDDDFSVHVIEQ--TVARIVPC-LAGN 967

Query: 181  TNKLSDTLLSFIELSPYRPFGTYVFCTGD--RELVVMKNPDAVLQILFYSSQLSSEVE 236
            T+K+   L+SF+   P+ P    V   G+  R L      DA+  +LF  +Q S+E++
Sbjct: 968  TDKVDMLLVSFVTAFPHIPQHRRVKLFGELVRALDASGTKDALATLLFLFAQKSAELK 1025


>sp|D1CDT8|FTSH_THET1 ATP-dependent zinc metalloprotease FtsH OS=Thermobaculum terrenum
           (strain ATCC BAA-798 / YNP1) GN=ftsH PE=3 SV=1
          Length = 646

 Score = 32.7 bits (73), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 7/66 (10%)

Query: 432 RYRYTQRWLEYALKISAGSSGESCFWARIEDLCLRTINMGLFEDVKEEILSLEKQVEKWV 491
           RY YT+R+L    +I+A   G +      E+L   T+  G   D+K+      + V +W 
Sbjct: 499 RYNYTERYLRS--RITAALGGRAA-----EELVFGTVTTGAENDLKQVTEIARQMVTRWG 551

Query: 492 QNRELG 497
            ++E+G
Sbjct: 552 MSKEVG 557


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.136    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 202,127,560
Number of Sequences: 539616
Number of extensions: 8660670
Number of successful extensions: 22557
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 22553
Number of HSP's gapped (non-prelim): 15
length of query: 530
length of database: 191,569,459
effective HSP length: 122
effective length of query: 408
effective length of database: 125,736,307
effective search space: 51300413256
effective search space used: 51300413256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)