BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009640
(530 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 89/204 (43%), Gaps = 45/204 (22%)
Query: 191 STFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMAN 250
ST++ + + K+I E + E + +G A +G +LYGPPG+GK+ L A+A+
Sbjct: 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH 204
Query: 251 YL-C--YDVYDLELTK--VTDNSEL-RALLLQTTNR--SIIVIEDIDCSVDLTADRMLXX 302
+ C V EL + + + S + R L + SII +++ID
Sbjct: 205 HTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDS------------ 252
Query: 303 XXXXXXXXXXXXXXXXEMGSRIASSTCGXXXXXXGEESGRVTLSGLLNFTDGLWSCCSEE 362
+GS + G G+ + T+ LLN DG + S+
Sbjct: 253 -----------------IGSTRVEGSGG------GDSEVQRTMLELLNQLDGFET--SKN 287
Query: 363 KIIVFTTNHRDSVDPALIRCGRMD 386
I+ TN D +DPAL+R GR+D
Sbjct: 288 IKIIMATNRLDILDPALLRPGRID 311
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 81/219 (36%), Gaps = 75/219 (34%)
Query: 182 WVSVPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGK 241
V +P RHP+ F+ + ++P RG LLYGPPG+GK
Sbjct: 219 MVELPLRHPALFKAIGVKP---------------------------PRGILLYGPPGTGK 251
Query: 242 SSLIAAMANYLCYDVYDLE----LTKVTDNSE--LRALLLQTTNRS--IIVIEDIDCSVD 293
+ + A+AN + + ++K+ SE LR + + II I+++D
Sbjct: 252 TLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELD---- 307
Query: 294 LTADRMLXXXXXXXXXXXXXXXXXXEMGSRIASSTCGXXXXXXGEESGRVTLSGLLNFTD 353
+ GE R+ +S LL D
Sbjct: 308 ---------------------------------AIAPKREKTHGEVERRI-VSQLLTLMD 333
Query: 354 GLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLG 392
GL I++ TN +S+DPAL R GR D V +G
Sbjct: 334 GLKQ--RAHVIVMAATNRPNSIDPALRRFGRFDREVDIG 370
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%)
Query: 192 TFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMAN 250
T+E + +K+++ E + + + + G +G L YGPPG GK+ L A+AN
Sbjct: 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 344 TLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMD 386
++ +L DG+ + + I+ TN D +DPA++R GR+D
Sbjct: 600 VINQILTEMDGMST--KKNVFIIGATNRPDIIDPAILRPGRLD 640
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 81/219 (36%), Gaps = 75/219 (34%)
Query: 182 WVSVPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGK 241
V +P RHP+ F+ + ++P RG LLYGPPG+GK
Sbjct: 219 MVELPLRHPALFKAIGVKP---------------------------PRGILLYGPPGTGK 251
Query: 242 SSLIAAMANYLCYDVYDLE----LTKVTDNSE--LRALLLQTTNRS--IIVIEDIDCSVD 293
+ + A+AN + + ++K+ SE LR + + II I+++D
Sbjct: 252 TLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELD---- 307
Query: 294 LTADRMLXXXXXXXXXXXXXXXXXXEMGSRIASSTCGXXXXXXGEESGRVTLSGLLNFTD 353
+ GE R+ +S LL D
Sbjct: 308 ---------------------------------AIAPKREKTHGEVERRI-VSQLLTLMD 333
Query: 354 GLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLG 392
GL I++ TN +S+DPAL R GR D V +G
Sbjct: 334 GLKQ--RAHVIVMAATNRPNSIDPALRRFGRFDREVDIG 370
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%)
Query: 192 TFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMAN 250
T+E + +K+++ E + + + + G +G L YGPPG GK+ L A+AN
Sbjct: 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 344 TLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMD 386
++ +L DG+ + + I+ TN D +DPA++R GR+D
Sbjct: 600 VINQILTEMDGMST--KKNVFIIGATNRPDIIDPAILRPGRLD 640
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 81/219 (36%), Gaps = 75/219 (34%)
Query: 182 WVSVPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGK 241
V +P RHP+ F+ + ++P RG LLYGPPG+GK
Sbjct: 219 MVELPLRHPALFKAIGVKP---------------------------PRGILLYGPPGTGK 251
Query: 242 SSLIAAMANYLCYDVYDLE----LTKVTDNSE--LRALLLQTTNRS--IIVIEDIDCSVD 293
+ + A+AN + + ++K+ SE LR + + II I+++D
Sbjct: 252 TLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELD---- 307
Query: 294 LTADRMLXXXXXXXXXXXXXXXXXXEMGSRIASSTCGXXXXXXGEESGRVTLSGLLNFTD 353
+ GE R+ +S LL D
Sbjct: 308 ---------------------------------AIAPKREKTHGEVERRI-VSQLLTLMD 333
Query: 354 GLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLG 392
GL I++ TN +S+DPAL R GR D V +G
Sbjct: 334 GLKQ--RAHVIVMAATNRPNSIDPALRRFGRFDREVDIG 370
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 81/219 (36%), Gaps = 75/219 (34%)
Query: 182 WVSVPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGK 241
V +P RHP+ F+ + ++P RG LLYGPPG+GK
Sbjct: 219 MVELPLRHPALFKAIGVKP---------------------------PRGILLYGPPGTGK 251
Query: 242 SSLIAAMANYLCYDVYDLE----LTKVTDNSE--LRALLLQTTNRS--IIVIEDIDCSVD 293
+ + A+AN + + ++K+ SE LR + + II I+++D
Sbjct: 252 TLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELD---- 307
Query: 294 LTADRMLXXXXXXXXXXXXXXXXXXEMGSRIASSTCGXXXXXXGEESGRVTLSGLLNFTD 353
+ GE R+ +S LL D
Sbjct: 308 ---------------------------------AIAPKREKTHGEVERRI-VSQLLTLMD 333
Query: 354 GLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLG 392
GL I++ TN +S+DPAL R GR D V +G
Sbjct: 334 GLKQ--RAHVIVMAATNRPNSIDPALRRFGRFDREVDIG 370
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 81/219 (36%), Gaps = 75/219 (34%)
Query: 182 WVSVPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGK 241
V +P RHP+ F+ + ++P RG LLYGPPG+GK
Sbjct: 219 MVELPLRHPALFKAIGVKP---------------------------PRGILLYGPPGTGK 251
Query: 242 SSLIAAMANYLCYDVYDLE----LTKVTDNSE--LRALLLQTTNRS--IIVIEDIDCSVD 293
+ + A+AN + + ++K+ SE LR + + II I+++D
Sbjct: 252 TLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELD---- 307
Query: 294 LTADRMLXXXXXXXXXXXXXXXXXXEMGSRIASSTCGXXXXXXGEESGRVTLSGLLNFTD 353
+ GE R+ +S LL D
Sbjct: 308 ---------------------------------AIAPKREKTHGEVERRI-VSQLLTLMD 333
Query: 354 GLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLG 392
GL I++ TN +S+DPAL R GR D V +G
Sbjct: 334 GLKQ--RAHVIVMAATNRPNSIDPALRRFGRFDREVDIG 370
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 81/219 (36%), Gaps = 75/219 (34%)
Query: 182 WVSVPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGK 241
V +P RHP+ F+ + ++P RG LLYGPPG+GK
Sbjct: 219 MVELPLRHPALFKAIGVKP---------------------------PRGILLYGPPGTGK 251
Query: 242 SSLIAAMANYLCYDVYDLE----LTKVTDNSE--LRALLLQTTNRS--IIVIEDIDCSVD 293
+ + A+AN + + ++K+ SE LR + + II I+++D
Sbjct: 252 TLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELD---- 307
Query: 294 LTADRMLXXXXXXXXXXXXXXXXXXEMGSRIASSTCGXXXXXXGEESGRVTLSGLLNFTD 353
+ GE R+ +S LL D
Sbjct: 308 ---------------------------------AIAPKREKTHGEVERRI-VSQLLTLMD 333
Query: 354 GLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLG 392
GL I++ TN +S+DPAL R GR D V +G
Sbjct: 334 GLKQ--RAHVIVMAATNRPNSIDPALRRFGRFDREVDIG 370
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 85/210 (40%), Gaps = 46/210 (21%)
Query: 191 STFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMAN 250
+TF +A + K+++ E L + + ++G +G L+ GPPG+GK+ L A+A
Sbjct: 9 TTFADVAGCDEAKEEVAE-LVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG 67
Query: 251 YLCYDVYDL------ELTKVTDNSELRALLLQTTNRS--IIVIEDIDCSVDLTADRMLXX 302
+ + E+ S +R + Q + II I++ID
Sbjct: 68 EAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDA------------ 115
Query: 303 XXXXXXXXXXXXXXXXEMGSRIASSTCGXXXXXXGEESGRVTLSGLLNFTDGLWSCCSEE 362
+G + + G G + TL+ +L DG +E
Sbjct: 116 -----------------VGRQRGAGLGG------GHDEREQTLNQMLVEMDGFEG--NEG 150
Query: 363 KIIVFTTNHRDSVDPALIRCGRMDVHVSLG 392
I++ TN D +DPAL+R GR D V +G
Sbjct: 151 IIVIAATNRPDVLDPALLRPGRFDRQVVVG 180
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 82/201 (40%), Gaps = 46/201 (22%)
Query: 197 ALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMAN-----Y 251
LE Q++ +I E + E Y +G +G +LYG PG+GK+ L A+AN +
Sbjct: 186 GLESQIQ-EIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATF 244
Query: 252 LCYDVYDLELTKVTDNSELRALLLQTTNR---SIIVIEDIDCSVDLTADRMLXXXXXXXX 308
L +L + D L + + SI+ I++ID
Sbjct: 245 LRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDA------------------ 286
Query: 309 XXXXXXXXXXEMGSRIASSTCGXXXXXXGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFT 368
+G++ S G GE + T+ LLN DG + ++
Sbjct: 287 -----------IGTKRYDSNSG------GEREIQRTMLELLNQLDGFDDRGDVK--VIMA 327
Query: 369 TNHRDSVDPALIRCGRMDVHV 389
TN +++DPALIR GR+D +
Sbjct: 328 TNKIETLDPALIRPGRIDRKI 348
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 75/187 (40%), Gaps = 55/187 (29%)
Query: 218 EFYHRVGRAWKRGYLLYGPPGSGKSSLIAAM-----ANYL------CYDVYDLELTKVTD 266
E + RVG +G LLYGPPG+GK+ L A+ AN++ D Y E ++
Sbjct: 205 EIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARI-- 262
Query: 267 NSELRALLLQTTNRS--IIVIEDIDCSVDLTADRMLXXXXXXXXXXXXXXXXXXEMGSRI 324
+R + II ++++D G R
Sbjct: 263 ---IREMFAYAKEHEPCIIFMDEVDAI----------------------------GGRRF 291
Query: 325 ASSTCGXXXXXXGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGR 384
+ T + + TL LL DG + + KII+ TN D++DPAL+R GR
Sbjct: 292 SEGTSA-------DREIQRTLMELLTQMDG-FDNLGQTKIIM-ATNRPDTLDPALLRPGR 342
Query: 385 MDVHVSL 391
+D V +
Sbjct: 343 LDRKVEI 349
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 80/212 (37%), Gaps = 72/212 (33%)
Query: 183 VSVPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKS 242
V +P +HP FE + +EP +G LLYGPPG+GK+
Sbjct: 33 VELPLKHPELFEKVGIEPP---------------------------KGILLYGPPGTGKT 65
Query: 243 SLIAAMA---NYLCYDVYDLELTK--VTDNSELRALLLQTTNR---SIIVIEDIDCSVDL 294
L A+A N V EL K + + + L + + SII I++ID
Sbjct: 66 LLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDA---- 121
Query: 295 TADRMLXXXXXXXXXXXXXXXXXXEMGSRIASSTCGXXXXXXGEESGRVTLSGLLNFTDG 354
+ ++ + G G+ + TL LL DG
Sbjct: 122 -------------------------IAAKRTDALTG------GDREVQRTLMQLLAEMDG 150
Query: 355 LWSCCSEEKIIVFTTNHRDSVDPALIRCGRMD 386
+ + KII TN D +DPA++R GR D
Sbjct: 151 -FDARGDVKII-GATNRPDILDPAILRPGRFD 180
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 82/206 (39%), Gaps = 46/206 (22%)
Query: 193 FETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL 252
F+ +A + K+++ E + F E Y +G +G LL GPPG+GK+ L A+A
Sbjct: 10 FKDMAGNEEAKEEVVE-IVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 68
Query: 253 CYDVYDL------ELTKVTDNSELRALLLQTTNR--SIIVIEDIDCSVDLTADRMLXXXX 304
+ + E+ S +R L + SII I++ID
Sbjct: 69 HVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDA-------------- 114
Query: 305 XXXXXXXXXXXXXXEMG-SRIASSTCGXXXXXXGEESGRVTLSGLLNFTDGLWSCCSEEK 363
+G SR A G + TL+ LL DG S +
Sbjct: 115 ---------------IGKSRAAGGVV------SGNDEREQTLNQLLAEMDGFGSENA-PV 152
Query: 364 IIVFTTNHRDSVDPALIRCGRMDVHV 389
I++ TN + +DPAL+R GR D V
Sbjct: 153 IVLAATNRPEILDPALMRPGRFDRQV 178
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 76/190 (40%), Gaps = 45/190 (23%)
Query: 208 EDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSL---IAAMANYLCYDVYD---LEL 261
+++ F ++R+G +G LL GPPG+GK+ L +A AN + + +EL
Sbjct: 29 KEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL 88
Query: 262 TKVTDNSELRALLLQTTNRS--IIVIEDIDCSVDLTADRMLXXXXXXXXXXXXXXXXXXE 319
+ +R L Q + I+ I++ID
Sbjct: 89 FVGVGAARVRDLFAQAKAHAPCIVFIDEIDA----------------------------- 119
Query: 320 MGSRIASSTCGXXXXXXGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPAL 379
+G + G G + TL+ LL DG S E I++ TN D +DPAL
Sbjct: 120 VGRHRGAGLGG------GHDEREQTLNQLLVEMDGFDS--KEGIIVMAATNRPDILDPAL 171
Query: 380 IRCGRMDVHV 389
+R GR D +
Sbjct: 172 LRPGRFDKKI 181
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%)
Query: 203 KKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMAN 250
K++I E + + Y ++G RG LLYGPPG+GK+ L+ A+AN
Sbjct: 181 KQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN 228
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 345 LSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTC 394
L LL DG + + ++ TN D++DPAL+R GR+D + +
Sbjct: 296 LIELLTQMDGFDQSTNVK--VIMATNRADTLDPALLRPGRLDRKIEFPSL 343
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 75/191 (39%), Gaps = 47/191 (24%)
Query: 210 LTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMAN-----YLCYDVYD-LELTK 263
+ F +H +G +G LL GPPG GK+ L A+A ++ D +E+
Sbjct: 46 IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFV 105
Query: 264 VTDNSELRALLLQTTNRS---IIVIEDIDCSVDLTADRMLXXXXXXXXXXXXXXXXXXEM 320
+ +R L +T R I+ I++ID +
Sbjct: 106 GVGAARVRD-LFETAKRHAPCIVFIDEIDA-----------------------------V 135
Query: 321 GSRIASSTCGXXXXXXGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALI 380
G + S G G + TL+ LL DG + +++ TN D +DPAL+
Sbjct: 136 GRKRGSGVGG------GNDEREQTLNQLLVEMDGFEKDTA--IVVMAATNRPDILDPALL 187
Query: 381 RCGRMDVHVSL 391
R GR D +++
Sbjct: 188 RPGRFDRQIAI 198
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 75/191 (39%), Gaps = 47/191 (24%)
Query: 210 LTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMAN-----YLCYDVYD-LELTK 263
+ F +H +G +G LL GPPG GK+ L A+A ++ D +E+
Sbjct: 55 IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFV 114
Query: 264 VTDNSELRALLLQTTNRS---IIVIEDIDCSVDLTADRMLXXXXXXXXXXXXXXXXXXEM 320
+ +R L +T R I+ I++ID +
Sbjct: 115 GVGAARVRD-LFETAKRHAPCIVFIDEIDA-----------------------------V 144
Query: 321 GSRIASSTCGXXXXXXGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALI 380
G + S G G + TL+ LL DG + +++ TN D +DPAL+
Sbjct: 145 GRKRGSGVGG------GNDEREQTLNQLLVEMDGFEKDTA--IVVMAATNRPDILDPALL 196
Query: 381 RCGRMDVHVSL 391
R GR D +++
Sbjct: 197 RPGRFDRQIAI 207
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 75/190 (39%), Gaps = 45/190 (23%)
Query: 208 EDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSL---IAAMANYLCYDVYD---LEL 261
+++ F ++R+G +G LL GPPG+G + L +A AN + + +EL
Sbjct: 29 KEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVAGEANVPFFHISGSDFVEL 88
Query: 262 TKVTDNSELRALLLQTTNRS--IIVIEDIDCSVDLTADRMLXXXXXXXXXXXXXXXXXXE 319
+ +R L Q + I+ I++ID
Sbjct: 89 FVGVGAARVRDLFAQAKAHAPCIVFIDEIDA----------------------------- 119
Query: 320 MGSRIASSTCGXXXXXXGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPAL 379
+G + G G + TL+ LL DG S E I++ TN D +DPAL
Sbjct: 120 VGRHRGAGLGG------GHDEREQTLNQLLVEMDGFDS--KEGIIVMAATNRPDILDPAL 171
Query: 380 IRCGRMDVHV 389
+R GR D +
Sbjct: 172 LRPGRFDKKI 181
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 75/191 (39%), Gaps = 47/191 (24%)
Query: 210 LTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMAN-----YLCYDVYD-LELTK 263
+ F +H +G +G LL GPPG GK+ L A+A ++ D +E+
Sbjct: 31 IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFV 90
Query: 264 VTDNSELRALLLQTTNR---SIIVIEDIDCSVDLTADRMLXXXXXXXXXXXXXXXXXXEM 320
+ +R L +T R I+ I++ID +
Sbjct: 91 GVGAARVRD-LFETAKRHAPCIVFIDEIDA-----------------------------V 120
Query: 321 GSRIASSTCGXXXXXXGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALI 380
G + S G G + TL+ LL DG + +++ TN D +DPAL+
Sbjct: 121 GRKRGSGVGG------GNDEREQTLNQLLVEMDGFEKDTA--IVVMAATNRPDILDPALL 172
Query: 381 RCGRMDVHVSL 391
R GR D +++
Sbjct: 173 RPGRFDRQIAI 183
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 73/181 (40%), Gaps = 47/181 (25%)
Query: 220 YHRVGRAWKRGYLLYGPPGSGKSSLIAAMAN-----YLCYDVYD-LELTKVTDNSELRAL 273
+H +G +G LL GPPG GK+ L A+A ++ D +E+ + +R
Sbjct: 65 FHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRD- 123
Query: 274 LLQTTNR---SIIVIEDIDCSVDLTADRMLXXXXXXXXXXXXXXXXXXEMGSRIASSTCG 330
L +T R I+ I++ID +G + S G
Sbjct: 124 LFETAKRHAPCIVFIDEIDA-----------------------------VGRKRGSGVGG 154
Query: 331 XXXXXXGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVS 390
G + TL+ LL DG + +++ TN D +DPAL+R GR D ++
Sbjct: 155 ------GNDEREQTLNQLLVEMDGFEKDTA--IVVMAATNRPDILDPALLRPGRFDRQIA 206
Query: 391 L 391
+
Sbjct: 207 I 207
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 80/180 (44%), Gaps = 44/180 (24%)
Query: 218 EFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMAN-----YLCYDVYD-LELTKVTDNSELR 271
E + ++G +G LL GPPG GK+ L A+A +L + +E+ + +R
Sbjct: 29 ERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVR 88
Query: 272 ALLLQTTNRS--IIVIEDIDCSVDLTADRMLXXXXXXXXXXXXXXXXXXEMGSRIASSTC 329
+L + R+ I+ I++ID +G + +++
Sbjct: 89 SLFKEARARAPCIVYIDEIDA-----------------------------VGKKRSTTMS 119
Query: 330 GXXXXXXGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHV 389
G EE TL+ LL DG+ + ++ I++ +TN D +D AL+R GR+D HV
Sbjct: 120 GFSNTE--EEQ---TLNQLLVEMDGMGT--TDHVIVLASTNRADILDGALMRPGRLDRHV 172
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 91/221 (41%), Gaps = 53/221 (23%)
Query: 197 ALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDV 256
ALE +++++T + A + + +G G LL GPPG GK+ L A+AN +
Sbjct: 14 ALE-DIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNF 72
Query: 257 YDLE----LTKVTDNSE--LRALLLQTTNRS--IIVIEDIDCSVDLTADRMLXXXXXXXX 308
++ L SE +R + + N + +I +++D +DR
Sbjct: 73 ISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDR---------- 122
Query: 309 XXXXXXXXXXEMGSRIASSTCGXXXXXXGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFT 368
E G+ + RV ++ LL DGL + ++ I+
Sbjct: 123 ----------ETGASV-----------------RV-VNQLLTEMDGLEA--RQQVFIMAA 152
Query: 369 TNHRDSVDPALIRCGRMDVHVSLGTCGP----HAFKVLAKN 405
TN D +DPA++R GR+D + +G P K + KN
Sbjct: 153 TNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKN 193
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 81/200 (40%), Gaps = 50/200 (25%)
Query: 202 LKKQITEDLTAFA---NGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAA-----MANYLC 253
L KQI E + A + + +G +G L+YGPPG+GK+ L A A +L
Sbjct: 186 LDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLK 245
Query: 254 YDVYDLELTKVTDNSEL---RALLLQTTNRSIIVIEDIDCSVDLTADRMLXXXXXXXXXX 310
L + + ++L L + +II I+++D
Sbjct: 246 LAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDA-------------------- 285
Query: 311 XXXXXXXXEMGSRIASSTCGXXXXXXGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFT-T 369
+G++ S G+ + T+ LLN DG S++++ V T
Sbjct: 286 ---------IGTKRFDS------EKSGDREVQRTMLELLNQLDGF---SSDDRVKVLAAT 327
Query: 370 NHRDSVDPALIRCGRMDVHV 389
N D +DPAL+R GR+D +
Sbjct: 328 NRVDVLDPALLRSGRLDRKI 347
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 8/74 (10%)
Query: 225 RAWKRGYLLYGPPGSGKSSL---IAAMANYLCYDVYDLELTK--VTDNSEL-RAL--LLQ 276
RA RG LL+GPPG+GK+ L +AA +N +++ LT V + +L RAL + +
Sbjct: 145 RAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVAR 204
Query: 277 TTNRSIIVIEDIDC 290
SII I+ +D
Sbjct: 205 ELQPSIIFIDQVDS 218
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 228 KRGYLLYGPPGSGKSSLI-AAMANYLCYDVYDLELTKVTDNSELRALLLQTTN 279
KRG +L GPPGSGK+ ++ A+ N YDV + +K T + + L + TN
Sbjct: 1048 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRHTN 1100
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 228 KRGYLLYGPPGSGKSSLI-AAMANYLCYDVYDLELTKVTDNSELRALLLQTTN 279
KRG +L GPPGSGK+ ++ A+ N YDV + +K T + + L + TN
Sbjct: 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRHTN 1319
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Query: 229 RGYLLYGPPGSGKSSLIAAMA------NYLCYDVYDLELTKVTDNSELRALLLQTTNR-- 280
RG LL+GPPG+GKS L A+A + DL + ++ +L L Q
Sbjct: 46 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENK 105
Query: 281 -SIIVIEDIDC 290
SII I++ID
Sbjct: 106 PSIIFIDEIDS 116
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Query: 225 RAWKRGYLLYGPPGSGKSSLIAAM-----ANYLCYDVYDLELTKVTDNSEL-RAL--LLQ 276
RA +G LL+GPPG+GK+ L A+ A +L L V D +L RAL + +
Sbjct: 51 RAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVAR 110
Query: 277 TTNRSIIVIEDID 289
SII I+++D
Sbjct: 111 HMQPSIIFIDEVD 123
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 9/70 (12%)
Query: 229 RGYLLYGPPGSGKSSLIAAMA------NYLCYDVYDLELTKVTDNSELRALLLQTTNR-- 280
RG LL+GPPG+GKS L A+A + DL + ++ +L L Q
Sbjct: 168 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENK 227
Query: 281 -SIIVIEDID 289
SII I++ID
Sbjct: 228 PSIIFIDEID 237
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 35.4 bits (80), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%)
Query: 192 TFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMAN 250
T+E + +K+++ E + + + + G +G L YGPPG GK+ L A+AN
Sbjct: 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 71
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 344 TLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMD 386
++ +L DG+ + + I+ TN D +DPA++R GR+D
Sbjct: 138 VINQILTEMDGMST--KKNVFIIGATNRPDIIDPAILRPGRLD 178
>pdb|2QGZ|A Chain A, Crystal Structure Of A Putative Primosome Component From
Streptococcus Pyogenes Serotype M3. Northeast Structural
Genomics Target Dr58
Length = 308
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 11/90 (12%)
Query: 210 LTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLC-----------YDVYD 258
+ AF+ +F + A ++G LYG G GKS L+AAMA+ L + +
Sbjct: 134 MEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFA 193
Query: 259 LELTKVTDNSELRALLLQTTNRSIIVIEDI 288
+++ N ++ + N +++++DI
Sbjct: 194 IDVKNAISNGSVKEEIDAVKNVPVLILDDI 223
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 191 STFETLA--LEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAM 248
+TF+ LA + P+ Q A GK + +L+GPPG+GK++L +
Sbjct: 11 NTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVI 70
Query: 249 ANYLCYDV 256
A Y DV
Sbjct: 71 ARYANADV 78
>pdb|3JVV|A Chain A, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|B Chain B, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|C Chain C, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVU|A Chain A, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|B Chain B, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|C Chain C, Crystal Structure Of Unliganded P. Aeruginosa Pilt
Length = 356
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 218 EFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVY 257
E + RV + L+ GP GSGKS+ +AAM +YL Y
Sbjct: 113 EVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKY 152
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 229 RGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVTDNSELRA 272
R +LYGPPG GK++ +A L YD+ + + V + L A
Sbjct: 78 RAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNA 121
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 8/69 (11%)
Query: 230 GYLLYGPPGSGKSSL---IAAMANYLCYDVYDLEL-TKVTDNSE--LRAL--LLQTTNRS 281
G LLYGPPG+GKS L +A AN + V +L +K SE ++ L + + S
Sbjct: 62 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPS 121
Query: 282 IIVIEDIDC 290
II I+++D
Sbjct: 122 IIFIDEVDA 130
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 8/69 (11%)
Query: 230 GYLLYGPPGSGKSSL---IAAMANYLCYDVYDLEL-TKVTDNSE--LRAL--LLQTTNRS 281
G LLYGPPG+GKS L +A AN + V +L +K SE ++ L + + S
Sbjct: 86 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPS 145
Query: 282 IIVIEDIDC 290
II I+ +D
Sbjct: 146 IIFIDQVDA 154
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 233 LYGPPGSGKSSLIAAMANYLCYDVYDLELTKVTDNSELRA 272
L GPPG GK+SL ++A L + L V D SE+R
Sbjct: 113 LAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRG 152
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 11/111 (9%)
Query: 178 YDSGWVSVPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPP 237
YDSG V F P + + + +KK+++ L A E V LL GPP
Sbjct: 12 YDSG---VQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHV--------LLAGPP 60
Query: 238 GSGKSSLIAAMANYLCYDVYDLELTKVTDNSELRALLLQTTNRSIIVIEDI 288
G GK++L +A+ L +++ + ++ A+L ++ I++I
Sbjct: 61 GLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 27/68 (39%)
Query: 183 VSVPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKS 242
V +P P F TL ++P +G LLYGPPG+GK+
Sbjct: 225 VELPLLSPERFATLGIDPP---------------------------KGILLYGPPGTGKT 257
Query: 243 SLIAAMAN 250
A+AN
Sbjct: 258 LCARAVAN 265
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 11/111 (9%)
Query: 178 YDSGWVSVPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPP 237
YDSG V F P + + + +KK+++ L A E V LL GPP
Sbjct: 12 YDSG---VQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHV--------LLAGPP 60
Query: 238 GSGKSSLIAAMANYLCYDVYDLELTKVTDNSELRALLLQTTNRSIIVIEDI 288
G GK++L +A+ L +++ + ++ A+L ++ I++I
Sbjct: 61 GLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 11/111 (9%)
Query: 178 YDSGWVSVPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPP 237
YDSG V F P + + + +KK+++ L A E V LL GPP
Sbjct: 12 YDSG---VQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHV--------LLAGPP 60
Query: 238 GSGKSSLIAAMANYLCYDVYDLELTKVTDNSELRALLLQTTNRSIIVIEDI 288
G GK++L +A+ L +++ + ++ A+L ++ I++I
Sbjct: 61 GLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 11/111 (9%)
Query: 178 YDSGWVSVPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPP 237
YDSG V F P + + + +KK+++ L A E V LL GPP
Sbjct: 12 YDSG---VQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHV--------LLAGPP 60
Query: 238 GSGKSSLIAAMANYLCYDVYDLELTKVTDNSELRALLLQTTNRSIIVIEDI 288
G GK++L +A+ L +++ + ++ A+L ++ I++I
Sbjct: 61 GLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 11/111 (9%)
Query: 178 YDSGWVSVPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPP 237
YDSG V F P + + + +KK+++ L A E V LL GPP
Sbjct: 12 YDSG---VQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHV--------LLAGPP 60
Query: 238 GSGKSSLIAAMANYLCYDVYDLELTKVTDNSELRALLLQTTNRSIIVIEDI 288
G GK++L +A+ L +++ + ++ A+L ++ I++I
Sbjct: 61 GLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 8/69 (11%)
Query: 230 GYLLYGPPGSGKSSL---IAAMANYLCYDVYDLEL-TKVTDNSE--LRAL--LLQTTNRS 281
G LLYGPPG+GKS L +A AN + V +L +K SE ++ L + + S
Sbjct: 71 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPS 130
Query: 282 IIVIEDIDC 290
II I+ +D
Sbjct: 131 IIFIDQVDA 139
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 8/69 (11%)
Query: 230 GYLLYGPPGSGKSSL---IAAMANYLCYDVYDLEL-TKVTDNSE--LRAL--LLQTTNRS 281
G LLYGPPG+GKS L +A AN + V +L +K SE ++ L + + S
Sbjct: 53 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPS 112
Query: 282 IIVIEDIDC 290
II I+ +D
Sbjct: 113 IIFIDQVDA 121
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 50/111 (45%), Gaps = 11/111 (9%)
Query: 178 YDSGWVSVPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPP 237
YDSG V F P + + + +KK+++ L A E V LL GPP
Sbjct: 12 YDSG---VQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHV--------LLAGPP 60
Query: 238 GSGKSSLIAAMANYLCYDVYDLELTKVTDNSELRALLLQTTNRSIIVIEDI 288
G G+++L +A+ L +++ + ++ A+L ++ I++I
Sbjct: 61 GLGRTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 18/108 (16%)
Query: 199 EPQLKKQITEDLTAFANGKEFYHRVGRAWK------RGYLLYGPPGSGKSSLIAAMANYL 252
E L KQ L N +E + K R LL GPPG+GK++L A+A L
Sbjct: 42 ESGLAKQAASGLVGQENAREACGVIVELIKSKKXAGRAVLLAGPPGTGKTALALAIAQEL 101
Query: 253 ------C----YDVYDLEL--TKVTDNSELRALLLQTTNRSIIVIEDI 288
C +VY E+ T+V + RA+ L+ +I+D+
Sbjct: 102 GSKVPFCPXVGSEVYSTEIKKTEVLXENFRRAIGLRIKEGPPGIIQDV 149
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 15/18 (83%)
Query: 232 LLYGPPGSGKSSLIAAMA 249
L YGPPG+GK+S I A+A
Sbjct: 50 LFYGPPGTGKTSTIVALA 67
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Query: 199 EPQLKKQITEDLTAFANGKEFYHRVGRAWK------RGYLLYGPPGSGKSSLIAAMANYL 252
E L KQ L N +E + K R LL GPPG+GK++L A+A L
Sbjct: 28 ESGLAKQAASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQEL 87
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Query: 225 RAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVTDN------SELRAL--LLQ 276
R +G LL+GPPG+GK+ + +A+ + + + +T +RAL + +
Sbjct: 114 RGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVAR 173
Query: 277 TTNRSIIVIEDID 289
++I I++ID
Sbjct: 174 CQQPAVIFIDEID 186
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 18/120 (15%)
Query: 193 FETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL 252
++ L+ + +LKKQ +D +N + + K LL GP GSGK+ + +A +L
Sbjct: 41 YKRLSFKEKLKKQDNQD----SNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL 96
Query: 253 CYDVYDLELTKVT-------DNSELRALLLQTTN-------RSIIVIEDIDCSVDLTADR 298
+ + T +T D + LLQ ++ + I+ I++ID L+ +R
Sbjct: 97 DIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENR 156
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Query: 233 LYGPPGSGKSSLIAAMANYLCYDVYDLELTKVTDNSELRALLLQTTNRSIIVIED----I 288
L GP G GKS+++A + + YD E+ D SE++ L + T I ++
Sbjct: 1110 LVGPSGCGKSTVVALLERF--YDTLGGEI--FIDGSEIKTLNPEHTRSQIAIVSQEPTLF 1165
Query: 289 DCSV 292
DCS+
Sbjct: 1166 DCSI 1169
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 232 LLYGPPGSGKSSLIAAMANYL 252
L YGPPG+GK+S I A+ L
Sbjct: 62 LFYGPPGTGKTSTILALTKEL 82
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 227 WKRGYLLYGPPGSGKSSLIAAMANYLCYDVYD 258
KR LL G PG+GKS L AMA L + +
Sbjct: 59 QKRHVLLIGEPGTGKSMLGQAMAELLPTETLE 90
>pdb|2EWV|A Chain A, Crystal Structure Of The Pilus Retraction Motor Pilt And
Bound Adp
Length = 372
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 232 LLYGPPGSGKSSLIAAMANYL 252
L+ GP GSGKS+ IA+M +Y+
Sbjct: 140 LVTGPTGSGKSTTIASMIDYI 160
>pdb|2DPY|A Chain A, Crystal Structure Of The Flagellar Type Iii Atpase Flii
pdb|2DPY|B Chain B, Crystal Structure Of The Flagellar Type Iii Atpase Flii
Length = 438
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 41/123 (33%), Gaps = 26/123 (21%)
Query: 158 EEFERVSRERRLFTNNGHGSYDSGWVSVPF-------------------RHPSTFETLAL 198
EE E + R++ NGHG +P P T ET AL
Sbjct: 65 EEVEGILPGARVYARNGHGDGLQSGKQLPLGPALLGRVLDGGGKPLDGLPAPDTLETGAL 124
Query: 199 -----EPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLC 253
P + I L VGR + G L+ G GKS L+ MA Y
Sbjct: 125 ITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMG--LFAGSGVGKSVLLGMMARYTR 182
Query: 254 YDV 256
DV
Sbjct: 183 ADV 185
>pdb|4ARZ|A Chain A, The Crystal Structure Of Gtr1p-Gtr2p Complexed With
Gtp-Gdp
Length = 310
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 228 KRGYLLYGPPGSGKSSLIAAM-ANYLCYDVYDLELTKVTDNSELRAL 273
++ LL G GSGKSS+ + + +NY +D L T ++S LR L
Sbjct: 6 RKKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFL 52
>pdb|1KAG|A Chain A, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
pdb|1KAG|B Chain B, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
Length = 173
Score = 28.5 bits (62), Expect = 8.8, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 226 AWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYD 258
A KR L GP G+GKS++ +A L + YD
Sbjct: 2 AEKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 232 LLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVTDNSELRALLLQTTNRS-IIVIEDI 288
LL+GPPG GK++L +A+ L ++ + +L A+L + I+ I++I
Sbjct: 42 LLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSLEEGDILFIDEI 99
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 232 LLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVTDNSELRALLLQTTNRS-IIVIEDI 288
LL+GPPG GK++L +A+ L ++ + +L A+L + I+ I++I
Sbjct: 42 LLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSLEEGDILFIDEI 99
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 232 LLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVTDNSELRALLLQTTNRS-IIVIEDI 288
LL+GPPG GK++L +A+ L ++ + +L A+L + I+ I++I
Sbjct: 42 LLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSLEEGDILFIDEI 99
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,056,563
Number of Sequences: 62578
Number of extensions: 523847
Number of successful extensions: 1538
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1446
Number of HSP's gapped (non-prelim): 99
length of query: 530
length of database: 14,973,337
effective HSP length: 103
effective length of query: 427
effective length of database: 8,527,803
effective search space: 3641371881
effective search space used: 3641371881
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)