Query 009640
Match_columns 530
No_of_seqs 474 out of 3036
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 15:33:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009640.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009640hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0743 AAA+-type ATPase [Post 100.0 5.8E-94 1.2E-98 736.5 40.6 426 1-465 1-440 (457)
2 COG1222 RPT1 ATP-dependent 26S 100.0 1.1E-44 2.3E-49 361.7 19.4 220 185-442 142-369 (406)
3 KOG0730 AAA+-type ATPase [Post 100.0 5.5E-41 1.2E-45 356.6 17.9 244 186-476 426-677 (693)
4 KOG0734 AAA+-type ATPase conta 100.0 8.4E-40 1.8E-44 338.2 16.9 211 189-441 299-517 (752)
5 KOG0733 Nuclear AAA ATPase (VC 100.0 4.1E-39 8.8E-44 337.8 20.0 222 190-454 186-417 (802)
6 KOG0733 Nuclear AAA ATPase (VC 100.0 2.7E-38 6E-43 331.5 19.2 224 188-454 505-739 (802)
7 KOG0738 AAA+-type ATPase [Post 100.0 4.5E-38 9.8E-43 315.8 14.1 261 189-496 207-490 (491)
8 KOG0731 AAA+-type ATPase conta 100.0 2.9E-36 6.3E-41 329.4 21.0 216 188-440 305-528 (774)
9 KOG0727 26S proteasome regulat 100.0 2.2E-36 4.7E-41 288.7 16.5 218 187-442 148-373 (408)
10 KOG0736 Peroxisome assembly fa 100.0 2.6E-36 5.6E-41 323.6 18.9 236 185-461 663-908 (953)
11 KOG0726 26S proteasome regulat 100.0 3.9E-37 8.4E-42 298.8 10.8 221 184-442 175-403 (440)
12 KOG0728 26S proteasome regulat 100.0 2.6E-36 5.6E-41 287.8 15.1 220 185-442 138-365 (404)
13 KOG0652 26S proteasome regulat 100.0 4E-35 8.7E-40 281.1 13.7 220 185-442 162-389 (424)
14 PTZ00454 26S protease regulato 100.0 3.6E-34 7.8E-39 301.4 21.3 219 186-442 137-363 (398)
15 KOG0739 AAA+-type ATPase [Post 100.0 6E-35 1.3E-39 284.4 11.9 262 187-495 126-396 (439)
16 TIGR03689 pup_AAA proteasome A 100.0 4.8E-34 1E-38 306.3 19.4 268 187-498 175-502 (512)
17 COG0465 HflB ATP-dependent Zn 100.0 1.4E-33 3.1E-38 303.8 16.3 233 188-459 144-397 (596)
18 KOG0735 AAA+-type ATPase [Post 100.0 4.8E-33 1E-37 296.0 19.8 211 191-442 664-882 (952)
19 PRK03992 proteasome-activating 100.0 1.1E-32 2.3E-37 290.9 19.6 220 185-442 122-349 (389)
20 CHL00195 ycf46 Ycf46; Provisio 100.0 6.2E-33 1.3E-37 298.0 17.0 252 189-493 223-483 (489)
21 KOG0729 26S proteasome regulat 100.0 9.4E-33 2E-37 265.5 14.8 219 184-442 167-395 (435)
22 TIGR01243 CDC48 AAA family ATP 100.0 2.4E-32 5.2E-37 310.1 20.8 215 188-442 447-669 (733)
23 PTZ00361 26 proteosome regulat 100.0 2.3E-32 5E-37 289.7 18.5 220 185-442 174-401 (438)
24 TIGR01241 FtsH_fam ATP-depende 100.0 6.5E-32 1.4E-36 293.9 20.0 216 187-441 48-271 (495)
25 COG1223 Predicted ATPase (AAA+ 100.0 9.3E-32 2E-36 258.1 16.3 207 189-441 116-330 (368)
26 COG0464 SpoVK ATPases of the A 100.0 1.9E-31 4E-36 290.6 20.7 216 187-442 235-459 (494)
27 KOG0737 AAA+-type ATPase [Post 100.0 3.1E-32 6.8E-37 273.9 13.1 213 189-442 87-308 (386)
28 CHL00176 ftsH cell division pr 100.0 1.5E-30 3.1E-35 287.8 19.8 215 187-440 176-398 (638)
29 KOG0730 AAA+-type ATPase [Post 100.0 4.8E-30 1E-34 273.4 17.3 252 189-497 180-440 (693)
30 TIGR01242 26Sp45 26S proteasom 100.0 2.4E-29 5.3E-34 263.7 19.5 220 185-442 113-340 (364)
31 CHL00206 ycf2 Ycf2; Provisiona 100.0 1.6E-29 3.5E-34 293.2 19.1 200 215-458 1617-1883(2281)
32 TIGR01243 CDC48 AAA family ATP 100.0 4.8E-29 1E-33 283.1 20.2 265 189-497 173-459 (733)
33 KOG0651 26S proteasome regulat 100.0 4.9E-30 1.1E-34 251.8 9.9 213 189-440 127-348 (388)
34 KOG0740 AAA+-type ATPase [Post 100.0 1.5E-29 3.4E-34 262.8 13.4 266 189-497 148-426 (428)
35 PRK10733 hflB ATP-dependent me 100.0 1.7E-28 3.6E-33 273.8 19.5 216 188-442 146-369 (644)
36 PLN00020 ribulose bisphosphate 100.0 9.2E-28 2E-32 244.1 20.7 166 219-425 139-327 (413)
37 KOG0732 AAA+-type ATPase conta 100.0 1.8E-27 3.8E-32 266.7 18.4 214 187-440 258-484 (1080)
38 KOG0741 AAA+-type ATPase [Post 99.9 6E-28 1.3E-32 250.3 11.2 248 187-475 212-492 (744)
39 PF14363 AAA_assoc: Domain ass 99.9 6.2E-22 1.3E-26 168.6 11.7 96 20-121 1-97 (98)
40 KOG0742 AAA+-type ATPase [Post 99.9 7.8E-21 1.7E-25 192.6 15.1 248 143-440 302-587 (630)
41 PF00004 AAA: ATPase family as 99.8 1.7E-20 3.7E-25 166.9 11.3 123 231-393 1-132 (132)
42 PF05496 RuvB_N: Holliday junc 99.8 3.6E-19 7.8E-24 171.0 19.2 167 188-413 18-198 (233)
43 KOG0735 AAA+-type ATPase [Post 99.8 1.8E-18 3.9E-23 185.4 14.2 253 194-497 408-673 (952)
44 PRK00080 ruvB Holliday junctio 99.8 1.2E-17 2.5E-22 173.1 19.3 192 187-438 18-223 (328)
45 TIGR00635 ruvB Holliday juncti 99.8 2.1E-17 4.5E-22 169.2 18.5 159 192-409 2-174 (305)
46 KOG0744 AAA+-type ATPase [Post 99.7 3.8E-18 8.2E-23 169.1 10.1 178 192-407 140-340 (423)
47 PRK04195 replication factor C 99.7 5.6E-17 1.2E-21 176.3 19.4 165 181-409 3-175 (482)
48 CHL00181 cbbX CbbX; Provisiona 99.7 6.7E-17 1.4E-21 164.0 17.5 169 194-410 23-212 (287)
49 TIGR02881 spore_V_K stage V sp 99.7 2E-16 4.4E-21 158.6 19.2 169 193-410 5-194 (261)
50 TIGR02880 cbbX_cfxQ probable R 99.7 1.6E-16 3.4E-21 161.2 17.4 169 195-411 23-212 (284)
51 COG2255 RuvB Holliday junction 99.7 5E-16 1.1E-20 152.2 17.8 179 188-411 20-198 (332)
52 TIGR00763 lon ATP-dependent pr 99.7 4.2E-16 9.2E-21 178.2 19.9 158 195-407 321-505 (775)
53 PRK14962 DNA polymerase III su 99.7 6.8E-16 1.5E-20 166.3 18.9 154 186-407 6-189 (472)
54 PRK07003 DNA polymerase III su 99.7 8.4E-16 1.8E-20 169.4 19.0 157 186-410 8-194 (830)
55 PHA02544 44 clamp loader, smal 99.7 2E-15 4.4E-20 155.3 20.7 196 179-453 8-211 (316)
56 PRK14956 DNA polymerase III su 99.7 7E-16 1.5E-20 164.3 17.6 156 185-408 9-194 (484)
57 PLN03025 replication factor C 99.7 5.8E-16 1.3E-20 159.8 16.5 188 181-454 2-203 (319)
58 PRK12323 DNA polymerase III su 99.7 5.2E-16 1.1E-20 169.1 16.1 157 186-410 8-199 (700)
59 KOG0736 Peroxisome assembly fa 99.7 6.4E-16 1.4E-20 167.5 16.2 190 209-441 412-609 (953)
60 COG0466 Lon ATP-dependent Lon 99.7 6.3E-16 1.4E-20 167.4 16.1 159 195-408 324-509 (782)
61 COG2256 MGS1 ATPase related to 99.7 1.5E-15 3.3E-20 155.2 16.5 195 188-459 18-220 (436)
62 PF05673 DUF815: Protein of un 99.7 1E-14 2.2E-19 142.2 20.1 199 181-438 14-242 (249)
63 PRK14960 DNA polymerase III su 99.7 3.1E-15 6.8E-20 163.4 18.3 156 186-409 7-192 (702)
64 PRK14961 DNA polymerase III su 99.6 6.5E-15 1.4E-19 154.6 19.6 155 187-409 9-193 (363)
65 PRK13342 recombination factor 99.6 4.4E-15 9.6E-20 158.5 18.2 152 185-408 3-165 (413)
66 PRK06645 DNA polymerase III su 99.6 1.1E-14 2.3E-19 157.8 19.4 157 185-409 12-202 (507)
67 PRK14964 DNA polymerase III su 99.6 1.1E-14 2.4E-19 156.6 18.5 156 187-410 6-191 (491)
68 PRK07994 DNA polymerase III su 99.6 1.3E-14 2.9E-19 160.3 18.8 154 187-408 9-192 (647)
69 PRK14958 DNA polymerase III su 99.6 9.1E-15 2E-19 159.1 17.3 156 185-408 7-192 (509)
70 PRK14963 DNA polymerase III su 99.6 2.4E-14 5.2E-19 155.5 19.9 155 187-409 7-190 (504)
71 TIGR02639 ClpA ATP-dependent C 99.6 6.7E-15 1.5E-19 167.5 15.8 158 189-408 177-359 (731)
72 PRK14949 DNA polymerase III su 99.6 2.2E-14 4.9E-19 161.0 19.5 155 187-409 9-193 (944)
73 KOG0989 Replication factor C, 99.6 7E-15 1.5E-19 145.6 13.5 151 185-404 27-198 (346)
74 PRK08691 DNA polymerase III su 99.6 1.6E-14 3.5E-19 159.2 17.5 157 186-410 8-194 (709)
75 TIGR02397 dnaX_nterm DNA polym 99.6 3.2E-14 6.8E-19 148.6 18.4 158 185-410 5-192 (355)
76 PRK05563 DNA polymerase III su 99.6 5E-14 1.1E-18 155.2 20.2 156 187-410 9-194 (559)
77 PRK14951 DNA polymerase III su 99.6 2.7E-14 5.8E-19 157.5 17.9 156 186-409 8-198 (618)
78 PRK07940 DNA polymerase III su 99.6 4E-14 8.6E-19 149.4 18.1 156 192-406 3-188 (394)
79 KOG2004 Mitochondrial ATP-depe 99.6 1.6E-14 3.5E-19 155.7 15.2 161 194-409 411-598 (906)
80 COG0464 SpoVK ATPases of the A 99.6 1.5E-14 3.3E-19 157.9 15.1 236 214-497 4-248 (494)
81 PRK14969 DNA polymerase III su 99.6 2.7E-14 5.8E-19 156.3 16.6 154 187-408 9-192 (527)
82 PRK14957 DNA polymerase III su 99.6 5.2E-14 1.1E-18 153.4 18.7 155 186-408 8-192 (546)
83 PRK14952 DNA polymerase III su 99.6 5.1E-14 1.1E-18 154.8 18.6 157 186-410 5-193 (584)
84 PRK06893 DNA replication initi 99.6 5.6E-14 1.2E-18 138.3 16.5 162 185-408 7-175 (229)
85 PRK07764 DNA polymerase III su 99.6 5.8E-14 1.3E-18 159.8 18.8 201 186-457 7-259 (824)
86 PRK10787 DNA-binding ATP-depen 99.6 3.4E-14 7.5E-19 161.5 17.0 158 195-408 323-507 (784)
87 PRK14970 DNA polymerase III su 99.6 1.3E-13 2.9E-18 144.9 20.1 156 185-408 8-181 (367)
88 PRK05896 DNA polymerase III su 99.6 4.4E-14 9.6E-19 154.3 16.7 156 185-408 7-192 (605)
89 PRK07133 DNA polymerase III su 99.6 1E-13 2.2E-18 154.1 19.4 156 185-408 9-191 (725)
90 PRK14959 DNA polymerase III su 99.6 6.7E-14 1.4E-18 153.6 17.3 156 185-408 7-192 (624)
91 PRK12402 replication factor C 99.6 1.3E-13 2.8E-18 142.7 17.9 158 181-409 4-199 (337)
92 PRK14965 DNA polymerase III su 99.5 1.1E-13 2.4E-18 153.2 17.6 154 187-408 9-192 (576)
93 PRK08451 DNA polymerase III su 99.5 2.5E-13 5.3E-18 147.5 19.6 157 185-409 5-191 (535)
94 PRK14953 DNA polymerase III su 99.5 2.5E-13 5.4E-18 147.1 18.2 157 185-409 7-193 (486)
95 PRK00440 rfc replication facto 99.5 4E-13 8.6E-18 137.9 18.8 188 180-453 5-205 (319)
96 PRK09111 DNA polymerase III su 99.5 3.1E-13 6.7E-18 149.3 18.5 157 185-409 15-206 (598)
97 PRK06305 DNA polymerase III su 99.5 4.8E-13 1E-17 143.9 19.5 154 187-408 10-194 (451)
98 PRK13341 recombination factor 99.5 2.2E-13 4.7E-18 153.4 17.3 197 181-456 17-222 (725)
99 PRK06647 DNA polymerase III su 99.5 4.6E-13 1E-17 147.3 19.4 154 187-408 9-192 (563)
100 TIGR02928 orc1/cdc6 family rep 99.5 1.3E-12 2.8E-17 137.0 21.3 158 193-408 14-213 (365)
101 PRK14955 DNA polymerase III su 99.5 3E-13 6.6E-18 143.6 16.1 154 187-408 9-200 (397)
102 TIGR03420 DnaA_homol_Hda DnaA 99.5 2.9E-13 6.2E-18 132.3 14.2 158 186-408 7-173 (226)
103 TIGR03345 VI_ClpV1 type VI sec 99.5 4E-13 8.6E-18 154.5 17.5 158 188-408 181-364 (852)
104 PRK14948 DNA polymerase III su 99.5 7.5E-13 1.6E-17 147.1 18.9 155 186-408 8-194 (620)
105 TIGR02902 spore_lonB ATP-depen 99.5 1.4E-12 3E-17 143.2 19.6 215 181-440 54-307 (531)
106 TIGR02640 gas_vesic_GvpN gas v 99.5 6.3E-13 1.4E-17 133.5 15.4 143 204-409 8-200 (262)
107 PRK14954 DNA polymerase III su 99.5 1.5E-12 3.2E-17 144.2 19.6 154 187-408 9-200 (620)
108 PRK08727 hypothetical protein; 99.5 1.3E-12 2.8E-17 129.0 17.2 186 185-451 10-204 (233)
109 PRK10865 protein disaggregatio 99.5 5.9E-13 1.3E-17 153.4 16.4 157 188-408 172-355 (857)
110 PRK08084 DNA replication initi 99.5 2E-12 4.3E-17 127.8 17.8 157 186-406 14-179 (235)
111 PRK11034 clpA ATP-dependent Cl 99.5 4.1E-13 8.8E-18 151.9 14.5 153 193-408 185-363 (758)
112 PRK14950 DNA polymerase III su 99.5 1.5E-12 3.2E-17 144.7 18.4 156 186-409 8-194 (585)
113 PRK00411 cdc6 cell division co 99.4 7.1E-12 1.5E-16 132.9 21.6 158 192-408 28-221 (394)
114 PRK14971 DNA polymerase III su 99.4 3.2E-12 6.8E-17 142.2 19.5 157 185-409 8-195 (614)
115 PRK08903 DnaA regulatory inact 99.4 3E-12 6.6E-17 125.5 17.1 153 185-406 9-169 (227)
116 PRK00149 dnaA chromosomal repl 99.4 7.3E-13 1.6E-17 143.0 13.6 167 185-410 113-296 (450)
117 TIGR00362 DnaA chromosomal rep 99.4 9.6E-13 2.1E-17 140.3 14.1 194 186-439 102-312 (405)
118 TIGR03346 chaperone_ClpB ATP-d 99.4 2.2E-12 4.8E-17 149.0 17.7 158 188-408 167-350 (852)
119 PRK05342 clpX ATP-dependent pr 99.4 3.2E-12 6.9E-17 135.6 17.2 98 195-292 72-186 (412)
120 KOG2028 ATPase related to the 99.4 1.2E-12 2.6E-17 132.0 12.5 150 187-405 131-292 (554)
121 COG2607 Predicted ATPase (AAA+ 99.4 7.3E-12 1.6E-16 120.4 17.1 173 182-411 48-243 (287)
122 PRK11034 clpA ATP-dependent Cl 99.4 4.9E-12 1.1E-16 143.1 17.3 159 195-408 459-667 (758)
123 CHL00095 clpC Clp protease ATP 99.4 5.3E-12 1.1E-16 145.5 16.7 151 192-406 177-353 (821)
124 TIGR01650 PD_CobS cobaltochela 99.4 8.3E-12 1.8E-16 127.5 15.8 162 228-440 64-279 (327)
125 PRK14086 dnaA chromosomal repl 99.4 6.2E-12 1.3E-16 137.7 15.6 168 186-413 280-465 (617)
126 TIGR00382 clpX endopeptidase C 99.4 9.4E-12 2E-16 131.6 16.4 98 195-292 78-194 (413)
127 PRK14088 dnaA chromosomal repl 99.4 3.6E-12 7.9E-17 136.9 12.8 165 186-411 97-280 (440)
128 PF00308 Bac_DnaA: Bacterial d 99.4 8.5E-12 1.8E-16 122.0 13.7 164 189-411 3-183 (219)
129 KOG1969 DNA replication checkp 99.4 3E-11 6.5E-16 131.2 18.5 220 180-453 259-512 (877)
130 cd00009 AAA The AAA+ (ATPases 99.3 1.3E-11 2.7E-16 110.1 13.2 115 228-393 19-151 (151)
131 PRK05642 DNA replication initi 99.3 2.1E-11 4.6E-16 120.4 16.0 160 185-406 10-178 (234)
132 PRK12422 chromosomal replicati 99.3 1.3E-11 2.7E-16 132.6 15.4 167 187-410 104-287 (445)
133 TIGR00678 holB DNA polymerase 99.3 2E-11 4.3E-16 116.3 15.0 123 228-406 14-167 (188)
134 TIGR02639 ClpA ATP-dependent C 99.3 2.8E-11 6E-16 138.0 17.7 155 194-408 454-663 (731)
135 PRK13407 bchI magnesium chelat 99.3 6.6E-11 1.4E-15 122.3 18.5 156 189-408 3-217 (334)
136 PTZ00112 origin recognition co 99.3 3.8E-11 8.3E-16 133.6 17.7 156 194-409 755-951 (1164)
137 COG2812 DnaX DNA polymerase II 99.3 1.7E-11 3.7E-16 131.9 14.6 157 188-412 10-196 (515)
138 PRK06620 hypothetical protein; 99.3 7.7E-11 1.7E-15 114.8 17.4 150 185-408 7-161 (214)
139 PF07728 AAA_5: AAA domain (dy 99.3 3.4E-12 7.4E-17 115.3 7.3 62 230-291 1-77 (139)
140 PHA02244 ATPase-like protein 99.3 3.7E-11 8.1E-16 124.1 15.0 132 204-398 106-265 (383)
141 PRK09112 DNA polymerase III su 99.3 1.2E-10 2.7E-15 121.4 19.1 151 188-406 17-212 (351)
142 PRK08181 transposase; Validate 99.3 3.6E-11 7.8E-16 120.7 13.3 125 144-291 40-179 (269)
143 PRK05564 DNA polymerase III su 99.3 2.2E-10 4.7E-15 118.1 19.4 148 192-407 2-165 (313)
144 PRK06526 transposase; Provisio 99.3 1E-11 2.3E-16 123.9 9.3 126 145-291 34-171 (254)
145 CHL00081 chlI Mg-protoporyphyr 99.3 8.9E-11 1.9E-15 121.6 16.3 156 189-408 12-233 (350)
146 PRK07471 DNA polymerase III su 99.3 3.3E-10 7.1E-15 118.8 20.7 153 188-408 13-214 (365)
147 PRK14087 dnaA chromosomal repl 99.3 8.2E-11 1.8E-15 126.7 16.6 160 190-409 111-290 (450)
148 TIGR00390 hslU ATP-dependent p 99.3 2.2E-10 4.7E-15 120.1 18.4 69 195-263 13-82 (441)
149 PRK07952 DNA replication prote 99.3 3.9E-11 8.5E-16 118.8 12.3 122 157-291 41-174 (244)
150 TIGR02903 spore_lon_C ATP-depe 99.3 2.1E-10 4.7E-15 127.9 19.0 180 188-409 148-368 (615)
151 COG0714 MoxR-like ATPases [Gen 99.2 7.5E-11 1.6E-15 122.3 14.3 130 228-408 43-204 (329)
152 PRK05201 hslU ATP-dependent pr 99.2 8E-11 1.7E-15 123.4 13.4 70 195-264 16-86 (443)
153 TIGR03345 VI_ClpV1 type VI sec 99.2 2.1E-10 4.6E-15 132.1 17.0 156 194-408 566-781 (852)
154 PRK10865 protein disaggregatio 99.2 4.4E-10 9.6E-15 129.8 19.0 161 193-408 567-780 (857)
155 TIGR03346 chaperone_ClpB ATP-d 99.2 5.1E-10 1.1E-14 129.6 18.7 160 194-408 565-777 (852)
156 TIGR02030 BchI-ChlI magnesium 99.2 4.4E-10 9.5E-15 116.4 16.2 153 192-408 2-220 (337)
157 KOG0991 Replication factor C, 99.2 1.2E-10 2.7E-15 111.4 10.9 195 179-460 14-223 (333)
158 PRK09087 hypothetical protein; 99.2 5.2E-10 1.1E-14 109.9 15.7 152 185-409 12-168 (226)
159 TIGR00602 rad24 checkpoint pro 99.2 3.8E-10 8.3E-15 125.1 15.8 206 180-456 72-328 (637)
160 CHL00095 clpC Clp protease ATP 99.2 7E-10 1.5E-14 128.1 17.5 159 194-408 509-733 (821)
161 PRK05707 DNA polymerase III su 99.1 1.4E-09 3E-14 112.6 17.2 124 228-407 22-178 (328)
162 COG1474 CDC6 Cdc6-related prot 99.1 2.9E-09 6.3E-14 111.6 19.1 154 194-408 17-204 (366)
163 PRK08116 hypothetical protein; 99.1 2.5E-10 5.5E-15 114.9 10.6 150 190-396 81-251 (268)
164 PRK12377 putative replication 99.1 1.2E-09 2.6E-14 108.5 13.3 96 189-291 69-175 (248)
165 PRK09183 transposase/IS protei 99.1 4.2E-10 9.1E-15 112.8 10.2 128 145-291 38-176 (259)
166 PRK11331 5-methylcytosine-spec 99.1 2E-09 4.2E-14 114.2 15.0 27 228-254 194-220 (459)
167 smart00382 AAA ATPases associa 99.1 1.1E-09 2.3E-14 96.5 10.7 65 228-292 2-91 (148)
168 PRK07399 DNA polymerase III su 99.1 6.4E-09 1.4E-13 107.0 17.6 147 192-407 2-195 (314)
169 smart00763 AAA_PrkA PrkA AAA d 99.1 7.4E-09 1.6E-13 107.1 18.0 65 190-261 46-118 (361)
170 PRK04132 replication factor C 99.0 3.3E-09 7.1E-14 120.7 16.3 154 231-455 567-735 (846)
171 COG0470 HolB ATPase involved i 99.0 2.8E-09 6.1E-14 109.5 14.5 119 230-404 26-178 (325)
172 PRK08939 primosomal protein Dn 99.0 8.4E-10 1.8E-14 113.1 10.4 97 190-291 123-229 (306)
173 PRK08058 DNA polymerase III su 99.0 2.9E-09 6.4E-14 110.4 14.3 146 192-405 3-180 (329)
174 COG0542 clpA ATP-binding subun 99.0 4.6E-09 9.9E-14 117.5 16.0 161 194-409 491-707 (786)
175 PF07726 AAA_3: ATPase family 99.0 3.2E-10 7E-15 100.2 5.5 105 230-385 1-129 (131)
176 PRK13531 regulatory ATPase Rav 99.0 1.7E-09 3.6E-14 115.6 11.8 128 228-406 39-193 (498)
177 TIGR02442 Cob-chelat-sub cobal 99.0 2.7E-09 5.8E-14 119.8 13.4 153 192-408 2-215 (633)
178 PF07724 AAA_2: AAA domain (Cd 99.0 4.4E-10 9.4E-15 105.7 5.9 64 229-292 4-81 (171)
179 KOG0741 AAA+-type ATPase [Post 99.0 5.4E-09 1.2E-13 110.3 13.5 134 229-405 539-684 (744)
180 PRK06964 DNA polymerase III su 98.9 1E-08 2.2E-13 106.3 14.1 57 343-406 147-203 (342)
181 COG1484 DnaC DNA replication p 98.9 1E-08 2.2E-13 102.5 13.0 94 190-291 75-179 (254)
182 COG0593 DnaA ATPase involved i 98.9 1.4E-08 3E-13 106.7 14.1 168 185-411 78-261 (408)
183 PF13177 DNA_pol3_delta2: DNA 98.9 3E-08 6.4E-13 92.4 14.6 110 228-393 19-160 (162)
184 PF03215 Rad17: Rad17 cell cyc 98.9 4.1E-08 8.8E-13 107.2 17.6 71 179-259 6-76 (519)
185 KOG0990 Replication factor C, 98.9 1.3E-08 2.7E-13 102.1 11.4 194 178-457 27-238 (360)
186 smart00350 MCM minichromosome 98.9 8.5E-09 1.8E-13 113.0 11.0 159 195-408 204-401 (509)
187 PRK07993 DNA polymerase III su 98.9 6.6E-08 1.4E-12 100.3 16.5 123 228-406 24-179 (334)
188 PRK08769 DNA polymerase III su 98.8 1.4E-07 3E-12 97.1 18.0 122 228-405 26-183 (319)
189 PRK06835 DNA replication prote 98.8 2.8E-08 6.1E-13 102.7 12.1 63 229-291 184-258 (329)
190 TIGR02031 BchD-ChlD magnesium 98.8 7.4E-08 1.6E-12 107.2 16.0 128 229-407 17-174 (589)
191 TIGR01817 nifA Nif-specific re 98.8 2.9E-07 6.3E-12 101.7 18.6 91 189-291 191-302 (534)
192 COG0542 clpA ATP-binding subun 98.8 5.2E-08 1.1E-12 109.1 12.7 154 192-407 168-346 (786)
193 PRK06871 DNA polymerase III su 98.8 1.1E-07 2.4E-12 98.0 14.0 123 228-406 24-178 (325)
194 PF01078 Mg_chelatase: Magnesi 98.7 1.7E-08 3.7E-13 96.8 7.1 46 192-252 1-46 (206)
195 TIGR02974 phageshock_pspF psp 98.7 3.4E-07 7.4E-12 95.0 17.3 83 197-291 2-105 (329)
196 PF01695 IstB_IS21: IstB-like 98.7 5.8E-09 1.3E-13 98.7 3.4 63 228-290 47-119 (178)
197 TIGR03015 pepcterm_ATPase puta 98.7 1.2E-06 2.7E-11 87.7 20.1 24 230-253 45-68 (269)
198 PRK08699 DNA polymerase III su 98.7 8.9E-08 1.9E-12 99.0 12.0 122 228-405 21-183 (325)
199 PRK06090 DNA polymerase III su 98.7 2E-07 4.4E-12 95.8 14.1 122 228-405 25-178 (319)
200 PRK11608 pspF phage shock prot 98.7 2.6E-07 5.6E-12 95.8 14.7 88 192-291 4-112 (326)
201 PF00158 Sigma54_activat: Sigm 98.7 1.2E-07 2.6E-12 88.9 10.8 84 197-291 2-105 (168)
202 COG1219 ClpX ATP-dependent pro 98.7 8.2E-08 1.8E-12 96.2 9.8 65 228-292 97-175 (408)
203 PRK06921 hypothetical protein; 98.7 6.9E-08 1.5E-12 97.2 9.4 63 228-290 117-188 (266)
204 PRK11388 DNA-binding transcrip 98.6 3.9E-07 8.5E-12 102.9 14.6 90 191-291 322-428 (638)
205 PF12775 AAA_7: P-loop contain 98.6 1.4E-07 3E-12 95.3 9.7 134 228-408 33-194 (272)
206 COG1224 TIP49 DNA helicase TIP 98.6 2.3E-06 5E-11 87.1 16.7 62 193-262 38-101 (450)
207 KOG0745 Putative ATP-dependent 98.6 3.2E-07 7E-12 95.2 10.8 64 228-291 226-303 (564)
208 PRK15429 formate hydrogenlyase 98.6 2.6E-06 5.7E-11 96.9 19.2 90 190-291 372-482 (686)
209 PF14532 Sigma54_activ_2: Sigm 98.5 1.8E-07 3.9E-12 84.6 7.2 77 198-291 2-81 (138)
210 TIGR00368 Mg chelatase-related 98.5 5.5E-07 1.2E-11 98.1 12.2 48 190-252 188-235 (499)
211 COG1239 ChlI Mg-chelatase subu 98.5 9E-07 1.9E-11 92.4 12.2 157 190-410 13-235 (423)
212 PRK10820 DNA-binding transcrip 98.5 7E-06 1.5E-10 90.4 19.7 91 189-291 199-310 (520)
213 TIGR02329 propionate_PrpR prop 98.5 1.6E-06 3.5E-11 95.1 13.6 91 189-291 207-319 (526)
214 PRK09862 putative ATP-dependen 98.5 4.3E-07 9.2E-12 98.7 8.9 47 192-253 189-235 (506)
215 PRK05022 anaerobic nitric oxid 98.5 7.9E-06 1.7E-10 89.9 19.0 88 192-291 185-293 (509)
216 PF00910 RNA_helicase: RNA hel 98.5 1.8E-07 3.9E-12 81.0 4.8 61 231-291 1-61 (107)
217 KOG2035 Replication factor C, 98.5 2E-06 4.3E-11 84.9 12.2 160 185-413 4-205 (351)
218 PHA02624 large T antigen; Prov 98.4 1.1E-06 2.3E-11 96.0 11.0 123 224-392 427-560 (647)
219 PRK15424 propionate catabolism 98.4 2.6E-06 5.7E-11 93.5 13.9 89 191-291 216-334 (538)
220 PF12774 AAA_6: Hydrolytic ATP 98.4 4E-06 8.7E-11 82.6 13.9 64 228-291 32-96 (231)
221 PF13173 AAA_14: AAA domain 98.4 7.3E-07 1.6E-11 79.6 7.6 63 229-291 3-73 (128)
222 KOG1514 Origin recognition com 98.4 1.1E-05 2.3E-10 88.6 17.3 130 230-410 424-592 (767)
223 PHA00729 NTP-binding motif con 98.4 3.8E-06 8.3E-11 82.0 11.7 135 230-410 19-168 (226)
224 PF01637 Arch_ATPase: Archaeal 98.3 5.2E-06 1.1E-10 80.4 12.5 133 228-409 20-206 (234)
225 PF13401 AAA_22: AAA domain; P 98.3 1.2E-06 2.7E-11 77.6 7.3 64 228-291 4-99 (131)
226 PF05621 TniB: Bacterial TniB 98.3 9.2E-06 2E-10 82.2 14.1 89 197-292 37-158 (302)
227 KOG1942 DNA helicase, TBP-inte 98.3 1.2E-05 2.5E-10 80.0 14.3 52 194-253 38-89 (456)
228 PTZ00111 DNA replication licen 98.3 3.1E-06 6.6E-11 96.6 11.7 128 229-407 493-657 (915)
229 PRK07132 DNA polymerase III su 98.3 5.9E-05 1.3E-09 77.1 19.9 122 228-405 18-160 (299)
230 PRK05917 DNA polymerase III su 98.3 1.5E-05 3.3E-10 80.7 14.3 111 228-394 19-154 (290)
231 KOG1970 Checkpoint RAD17-RFC c 98.3 2.2E-05 4.8E-10 84.0 15.7 73 180-260 70-142 (634)
232 KOG1968 Replication factor C, 98.2 7.8E-06 1.7E-10 93.7 12.8 175 181-411 309-506 (871)
233 PRK05818 DNA polymerase III su 98.2 1.7E-05 3.6E-10 79.0 13.5 112 227-394 6-147 (261)
234 KOG1051 Chaperone HSP104 and r 98.2 5.3E-06 1.2E-10 94.5 11.1 92 194-291 562-672 (898)
235 TIGR01818 ntrC nitrogen regula 98.2 4.7E-05 1E-09 82.5 17.5 86 194-291 134-240 (463)
236 COG0606 Predicted ATPase with 98.2 3.6E-06 7.7E-11 89.2 8.3 48 190-252 175-222 (490)
237 COG1220 HslU ATP-dependent pro 98.2 1.9E-05 4.2E-10 80.0 13.0 68 196-263 17-85 (444)
238 PRK10923 glnG nitrogen regulat 98.2 5.9E-05 1.3E-09 82.0 18.1 87 193-291 137-244 (469)
239 COG1221 PspF Transcriptional r 98.2 8.6E-06 1.9E-10 85.7 10.9 92 189-291 73-185 (403)
240 PF03969 AFG1_ATPase: AFG1-lik 98.2 2.3E-06 5E-11 89.7 6.7 99 225-375 59-172 (362)
241 PRK11361 acetoacetate metaboli 98.2 4.7E-05 1E-09 82.3 17.0 86 194-291 143-249 (457)
242 TIGR02915 PEP_resp_reg putativ 98.2 6.5E-05 1.4E-09 81.0 17.5 87 193-291 138-245 (445)
243 PRK07276 DNA polymerase III su 98.2 4.4E-05 9.5E-10 77.6 15.1 118 228-404 24-172 (290)
244 PF05729 NACHT: NACHT domain 98.2 1.7E-05 3.6E-10 72.7 10.9 24 229-252 1-24 (166)
245 PHA02774 E1; Provisional 98.2 2.1E-05 4.4E-10 85.8 13.0 58 224-288 430-488 (613)
246 PLN03210 Resistant to P. syrin 98.1 4.7E-05 1E-09 91.6 17.3 60 184-254 174-233 (1153)
247 KOG2227 Pre-initiation complex 98.1 6.8E-05 1.5E-09 79.1 16.0 185 194-438 150-369 (529)
248 PF00931 NB-ARC: NB-ARC domain 98.1 3.6E-05 7.8E-10 77.7 12.4 147 228-434 19-199 (287)
249 cd01120 RecA-like_NTPases RecA 98.1 3.9E-05 8.4E-10 69.8 11.2 30 231-260 2-34 (165)
250 PRK15115 response regulator Gl 98.0 0.00019 4.2E-09 77.3 16.7 62 229-291 158-240 (444)
251 PRK13406 bchD magnesium chelat 98.0 3.5E-05 7.5E-10 85.6 10.6 120 229-399 26-174 (584)
252 KOG0478 DNA replication licens 98.0 2.1E-05 4.7E-10 85.9 8.4 96 195-292 430-539 (804)
253 PF06068 TIP49: TIP49 C-termin 98.0 2.3E-05 5E-10 81.0 8.2 77 193-277 23-106 (398)
254 PF05707 Zot: Zonular occluden 97.9 4.6E-05 9.9E-10 73.0 8.0 33 360-394 114-146 (193)
255 COG5271 MDN1 AAA ATPase contai 97.8 0.00013 2.8E-09 85.9 12.0 125 228-408 1543-1704(4600)
256 KOG2170 ATPase of the AAA+ sup 97.8 5.7E-05 1.2E-09 75.7 8.2 92 194-291 82-190 (344)
257 PRK10365 transcriptional regul 97.8 0.00062 1.4E-08 73.2 16.7 62 229-291 163-245 (441)
258 PF13207 AAA_17: AAA domain; P 97.8 1.8E-05 3.9E-10 69.3 3.8 30 231-260 2-31 (121)
259 COG3829 RocR Transcriptional r 97.8 0.00011 2.5E-09 79.0 10.5 93 187-291 238-352 (560)
260 PF00493 MCM: MCM2/3/5 family 97.7 1.4E-05 3E-10 83.1 2.5 129 229-409 58-223 (331)
261 PRK15455 PrkA family serine pr 97.7 4.5E-05 9.8E-10 83.2 6.2 66 189-261 71-137 (644)
262 KOG0480 DNA replication licens 97.7 8.4E-05 1.8E-09 80.8 8.1 163 193-409 344-544 (764)
263 COG2204 AtoC Response regulato 97.7 0.0011 2.4E-08 71.3 16.3 89 192-291 139-247 (464)
264 cd01124 KaiC KaiC is a circadi 97.7 0.00026 5.6E-09 66.7 10.3 30 231-260 2-34 (187)
265 TIGR02237 recomb_radB DNA repa 97.7 0.00015 3.2E-09 70.0 8.8 40 224-263 8-50 (209)
266 PRK00131 aroK shikimate kinase 97.7 4.1E-05 9E-10 71.1 4.6 35 226-260 2-36 (175)
267 PRK14722 flhF flagellar biosyn 97.7 0.00012 2.6E-09 76.9 8.3 63 228-290 137-226 (374)
268 PF06309 Torsin: Torsin; Inte 97.7 7.5E-05 1.6E-09 66.2 5.7 53 194-252 25-77 (127)
269 PF13604 AAA_30: AAA domain; P 97.6 0.00051 1.1E-08 66.0 11.4 63 229-291 19-105 (196)
270 PF08740 BCS1_N: BCS1 N termin 97.6 0.002 4.3E-08 61.3 15.2 129 59-196 34-187 (187)
271 COG1618 Predicted nucleotide k 97.6 0.00053 1.2E-08 63.0 10.2 24 229-252 6-29 (179)
272 PRK07261 topology modulation p 97.6 0.00025 5.4E-09 66.6 8.5 30 231-260 3-32 (171)
273 PRK08118 topology modulation p 97.6 0.00013 2.7E-09 68.4 6.1 57 230-287 3-66 (167)
274 TIGR01618 phage_P_loop phage n 97.5 8.8E-05 1.9E-09 72.5 4.1 22 229-250 13-34 (220)
275 TIGR02688 conserved hypothetic 97.5 0.00069 1.5E-08 71.8 10.9 62 229-291 210-272 (449)
276 COG1241 MCM2 Predicted ATPase 97.4 0.00017 3.6E-09 80.7 5.8 94 194-291 286-395 (682)
277 PRK12723 flagellar biosynthesi 97.4 0.0017 3.7E-08 68.8 13.0 26 227-252 173-198 (388)
278 PRK06067 flagellar accessory p 97.4 0.00077 1.7E-08 66.4 9.8 38 224-261 21-61 (234)
279 PRK06581 DNA polymerase III su 97.4 0.0064 1.4E-07 59.9 15.8 125 229-409 16-163 (263)
280 PRK13947 shikimate kinase; Pro 97.4 0.00014 3.1E-09 67.7 4.2 31 230-260 3-33 (171)
281 PRK03839 putative kinase; Prov 97.4 0.00013 2.8E-09 68.8 3.9 30 231-260 3-32 (180)
282 PF00437 T2SE: Type II/IV secr 97.4 0.00033 7.1E-09 70.5 7.0 92 188-290 98-208 (270)
283 PF14516 AAA_35: AAA-like doma 97.4 0.0089 1.9E-07 62.2 17.8 36 229-264 32-70 (331)
284 cd00464 SK Shikimate kinase (S 97.4 0.00015 3.2E-09 66.1 4.1 31 230-260 1-31 (154)
285 cd01129 PulE-GspE PulE/GspE Th 97.4 0.00096 2.1E-08 67.2 9.8 85 191-290 57-160 (264)
286 PRK08533 flagellar accessory p 97.4 0.00093 2E-08 65.9 9.4 37 224-260 20-59 (230)
287 PRK00625 shikimate kinase; Pro 97.3 0.00018 3.8E-09 67.9 4.0 31 230-260 2-32 (173)
288 cd01394 radB RadB. The archaea 97.3 0.00094 2E-08 64.9 9.1 38 224-261 15-55 (218)
289 PF13671 AAA_33: AAA domain; P 97.3 0.00017 3.7E-09 64.9 3.5 26 231-256 2-27 (143)
290 KOG3347 Predicted nucleotide k 97.3 0.00019 4.1E-09 65.0 3.7 33 228-260 7-39 (176)
291 PRK13949 shikimate kinase; Pro 97.3 0.0002 4.4E-09 67.1 4.0 32 229-260 2-33 (169)
292 cd03281 ABC_MSH5_euk MutS5 hom 97.3 0.00076 1.6E-08 65.7 8.1 63 229-291 30-120 (213)
293 COG5245 DYN1 Dynein, heavy cha 97.3 0.00079 1.7E-08 79.0 9.1 139 226-408 1492-1659(3164)
294 KOG2228 Origin recognition com 97.3 0.0058 1.3E-07 62.5 14.3 153 196-408 26-220 (408)
295 cd03283 ABC_MutS-like MutS-lik 97.3 0.0011 2.4E-08 63.8 9.0 63 229-291 26-117 (199)
296 TIGR02525 plasmid_TraJ plasmid 97.3 0.0013 2.7E-08 69.4 9.9 24 229-252 150-173 (372)
297 TIGR03499 FlhF flagellar biosy 97.3 0.0016 3.5E-08 66.2 10.4 61 228-288 194-281 (282)
298 PRK13765 ATP-dependent proteas 97.3 0.00054 1.2E-08 76.9 7.4 54 186-254 23-76 (637)
299 COG1373 Predicted ATPase (AAA+ 97.3 0.0022 4.8E-08 68.4 11.7 62 230-291 39-106 (398)
300 TIGR00764 lon_rel lon-related 97.3 0.00055 1.2E-08 76.7 7.4 52 189-255 13-64 (608)
301 PRK09361 radB DNA repair and r 97.3 0.00097 2.1E-08 65.2 8.2 39 224-262 19-60 (225)
302 TIGR02858 spore_III_AA stage I 97.2 0.00097 2.1E-08 67.3 8.3 26 229-254 112-137 (270)
303 cd01393 recA_like RecA is a b 97.2 0.0012 2.6E-08 64.3 8.7 29 224-252 15-43 (226)
304 PRK05800 cobU adenosylcobinami 97.2 0.00065 1.4E-08 63.9 6.3 63 230-292 3-89 (170)
305 cd00267 ABC_ATPase ABC (ATP-bi 97.2 0.001 2.3E-08 61.1 7.6 65 229-293 26-112 (157)
306 PRK04296 thymidine kinase; Pro 97.2 0.0023 4.9E-08 61.2 10.1 30 230-259 4-36 (190)
307 TIGR01359 UMP_CMP_kin_fam UMP- 97.2 0.00029 6.4E-09 66.3 3.9 29 231-259 2-30 (183)
308 COG0703 AroK Shikimate kinase 97.2 0.00029 6.3E-09 65.8 3.5 32 229-260 3-34 (172)
309 PF13191 AAA_16: AAA ATPase do 97.2 0.00024 5.2E-09 66.5 2.9 37 228-264 24-63 (185)
310 PRK14532 adenylate kinase; Pro 97.2 0.00034 7.3E-09 66.4 3.9 30 230-259 2-31 (188)
311 cd02021 GntK Gluconate kinase 97.2 0.00035 7.5E-09 63.7 3.8 28 231-258 2-29 (150)
312 PF04665 Pox_A32: Poxvirus A32 97.2 0.0099 2.1E-07 58.8 14.2 46 361-409 127-172 (241)
313 PRK14531 adenylate kinase; Pro 97.2 0.0004 8.7E-09 65.8 4.3 31 229-259 3-33 (183)
314 TIGR02782 TrbB_P P-type conjug 97.2 0.0014 3.1E-08 67.1 8.7 62 228-289 132-214 (299)
315 COG1485 Predicted ATPase [Gene 97.2 0.00067 1.5E-08 69.7 6.1 29 226-254 63-91 (367)
316 PRK13948 shikimate kinase; Pro 97.2 0.00046 9.9E-09 65.6 4.6 34 227-260 9-42 (182)
317 TIGR02012 tigrfam_recA protein 97.2 0.00084 1.8E-08 69.2 6.8 69 224-292 51-146 (321)
318 cd02020 CMPK Cytidine monophos 97.1 0.00038 8.3E-09 62.7 3.8 30 231-260 2-31 (147)
319 PRK06217 hypothetical protein; 97.1 0.00041 9E-09 65.7 4.1 31 230-260 3-33 (183)
320 PRK04841 transcriptional regul 97.1 0.017 3.7E-07 67.8 18.3 32 229-261 33-64 (903)
321 cd01123 Rad51_DMC1_radA Rad51_ 97.1 0.0016 3.4E-08 63.9 8.1 28 224-251 15-42 (235)
322 TIGR01313 therm_gnt_kin carboh 97.1 0.00041 9E-09 64.2 3.5 28 231-258 1-28 (163)
323 cd01428 ADK Adenylate kinase ( 97.1 0.00046 9.9E-09 65.5 3.9 29 231-259 2-30 (194)
324 PRK12608 transcription termina 97.1 0.011 2.4E-07 62.1 14.2 24 231-254 136-159 (380)
325 PRK13946 shikimate kinase; Pro 97.1 0.00048 1E-08 65.4 3.9 33 228-260 10-42 (184)
326 TIGR00767 rho transcription te 97.1 0.0083 1.8E-07 63.4 13.3 24 230-253 170-193 (415)
327 TIGR00150 HI0065_YjeE ATPase, 97.1 0.0015 3.2E-08 58.8 6.7 27 229-255 23-49 (133)
328 PRK11823 DNA repair protein Ra 97.1 0.00073 1.6E-08 73.1 5.7 69 224-292 76-169 (446)
329 cd00983 recA RecA is a bacter 97.1 0.0011 2.4E-08 68.5 6.6 69 224-292 51-146 (325)
330 PRK05057 aroK shikimate kinase 97.1 0.00058 1.3E-08 64.2 4.3 34 228-261 4-37 (172)
331 PF13086 AAA_11: AAA domain; P 97.0 0.00048 1E-08 66.6 3.6 22 231-252 20-41 (236)
332 PRK09376 rho transcription ter 97.0 0.0052 1.1E-07 64.7 11.3 24 231-254 172-195 (416)
333 cd02019 NK Nucleoside/nucleoti 97.0 0.0014 3.1E-08 51.9 5.6 29 231-259 2-31 (69)
334 PF05272 VirE: Virulence-assoc 97.0 0.0013 2.7E-08 63.4 6.1 60 224-291 48-107 (198)
335 PF13245 AAA_19: Part of AAA d 97.0 0.0011 2.3E-08 53.8 4.7 33 230-262 12-51 (76)
336 PRK03731 aroL shikimate kinase 97.0 0.00079 1.7E-08 62.8 4.3 31 230-260 4-34 (171)
337 PRK08233 hypothetical protein; 97.0 0.0052 1.1E-07 57.5 9.9 24 230-253 5-28 (182)
338 COG1936 Predicted nucleotide k 97.0 0.00051 1.1E-08 63.9 2.8 29 231-260 3-31 (180)
339 cd01121 Sms Sms (bacterial rad 97.0 0.0012 2.6E-08 69.7 6.0 69 224-292 78-171 (372)
340 PRK05703 flhF flagellar biosyn 96.9 0.013 2.8E-07 63.1 13.8 35 228-262 221-260 (424)
341 COG1102 Cmk Cytidylate kinase 96.9 0.00076 1.7E-08 62.0 3.7 29 231-259 3-31 (179)
342 TIGR01360 aden_kin_iso1 adenyl 96.9 0.00082 1.8E-08 63.3 4.1 31 229-259 4-34 (188)
343 PRK13764 ATPase; Provisional 96.9 0.0025 5.5E-08 70.9 8.5 62 228-290 257-335 (602)
344 PRK14530 adenylate kinase; Pro 96.9 0.00089 1.9E-08 65.1 4.3 30 230-259 5-34 (215)
345 PRK05973 replicative DNA helic 96.9 0.0037 8.1E-08 61.8 8.7 39 224-262 60-101 (237)
346 PF08298 AAA_PrkA: PrkA AAA do 96.9 0.0018 4E-08 67.0 6.8 64 193-263 59-124 (358)
347 PRK08154 anaerobic benzoate ca 96.9 0.0017 3.7E-08 66.9 6.4 57 199-260 109-165 (309)
348 PRK13695 putative NTPase; Prov 96.9 0.0078 1.7E-07 56.4 10.4 22 231-252 3-24 (174)
349 PRK02496 adk adenylate kinase; 96.9 0.00092 2E-08 63.2 4.1 29 231-259 4-32 (184)
350 cd00046 DEXDc DEAD-like helica 96.9 0.0017 3.7E-08 56.6 5.5 24 229-252 1-24 (144)
351 COG1116 TauB ABC-type nitrate/ 96.9 0.004 8.8E-08 61.3 8.5 22 231-252 32-53 (248)
352 PRK06547 hypothetical protein; 96.9 0.0015 3.3E-08 61.5 5.3 33 228-260 15-47 (172)
353 COG1855 ATPase (PilT family) [ 96.9 0.0011 2.3E-08 69.9 4.7 52 190-259 243-294 (604)
354 PRK06762 hypothetical protein; 96.9 0.0012 2.6E-08 61.2 4.6 32 229-260 3-34 (166)
355 cd03247 ABCC_cytochrome_bd The 96.9 0.0051 1.1E-07 57.8 9.0 24 229-252 29-52 (178)
356 PRK13833 conjugal transfer pro 96.9 0.003 6.5E-08 65.3 7.9 62 228-289 144-225 (323)
357 cd03216 ABC_Carb_Monos_I This 96.9 0.0027 5.9E-08 59.0 6.9 24 229-252 27-50 (163)
358 cd01131 PilT Pilus retraction 96.9 0.0022 4.7E-08 61.7 6.5 24 230-253 3-26 (198)
359 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.9 0.0041 9E-08 56.6 7.9 64 229-292 27-101 (144)
360 COG3604 FhlA Transcriptional r 96.9 0.0057 1.2E-07 65.5 9.9 91 190-291 219-329 (550)
361 PRK14528 adenylate kinase; Pro 96.9 0.001 2.3E-08 63.3 4.1 30 230-259 3-32 (186)
362 PTZ00088 adenylate kinase 1; P 96.8 0.0011 2.3E-08 65.4 4.1 30 230-259 8-37 (229)
363 cd01130 VirB11-like_ATPase Typ 96.8 0.0029 6.3E-08 60.1 6.9 26 228-253 25-50 (186)
364 cd03228 ABCC_MRP_Like The MRP 96.8 0.0059 1.3E-07 57.1 8.8 24 229-252 29-52 (171)
365 PRK11889 flhF flagellar biosyn 96.8 0.014 3E-07 61.7 12.2 49 200-252 217-265 (436)
366 COG2805 PilT Tfp pilus assembl 96.8 0.005 1.1E-07 62.1 8.4 89 182-290 98-209 (353)
367 cd03280 ABC_MutS2 MutS2 homolo 96.8 0.0046 1E-07 59.4 8.0 21 229-249 29-49 (200)
368 cd00544 CobU Adenosylcobinamid 96.8 0.0043 9.3E-08 58.2 7.6 62 231-292 2-86 (169)
369 cd03243 ABC_MutS_homologs The 96.8 0.0055 1.2E-07 59.0 8.5 64 229-292 30-121 (202)
370 PRK00279 adk adenylate kinase; 96.8 0.0013 2.8E-08 64.0 4.0 29 231-259 3-31 (215)
371 TIGR01351 adk adenylate kinase 96.8 0.0013 2.8E-08 63.8 4.0 29 231-259 2-30 (210)
372 COG2874 FlaH Predicted ATPases 96.7 0.0039 8.5E-08 60.0 7.0 37 216-252 14-52 (235)
373 PLN02200 adenylate kinase fami 96.7 0.0017 3.6E-08 64.3 4.6 31 228-258 43-73 (234)
374 KOG0482 DNA replication licens 96.7 0.0038 8.3E-08 66.6 7.4 200 195-439 343-583 (721)
375 PRK04182 cytidylate kinase; Pr 96.7 0.0014 3.1E-08 61.2 3.9 29 231-259 3-31 (180)
376 PRK13894 conjugal transfer ATP 96.7 0.0071 1.5E-07 62.6 9.4 62 228-289 148-229 (319)
377 PF13238 AAA_18: AAA domain; P 96.7 0.0012 2.5E-08 57.9 3.0 22 231-252 1-22 (129)
378 COG4619 ABC-type uncharacteriz 96.7 0.0025 5.4E-08 59.2 5.2 23 230-252 31-53 (223)
379 cd03282 ABC_MSH4_euk MutS4 hom 96.7 0.0042 9.1E-08 60.1 7.1 62 229-290 30-119 (204)
380 PF10443 RNA12: RNA12 protein; 96.7 0.021 4.6E-07 60.6 12.6 87 365-455 186-298 (431)
381 cd00227 CPT Chloramphenicol (C 96.7 0.0015 3.3E-08 61.3 3.7 31 229-259 3-33 (175)
382 PRK14527 adenylate kinase; Pro 96.7 0.0012 2.7E-08 62.8 3.1 31 229-259 7-37 (191)
383 PF13521 AAA_28: AAA domain; P 96.7 0.0013 2.9E-08 60.8 3.2 26 231-257 2-27 (163)
384 PF08433 KTI12: Chromatin asso 96.7 0.0029 6.4E-08 63.9 5.8 61 231-291 4-82 (270)
385 PRK09354 recA recombinase A; P 96.6 0.0039 8.3E-08 65.0 6.7 69 224-292 56-151 (349)
386 cd03246 ABCC_Protease_Secretio 96.6 0.0085 1.8E-07 56.1 8.5 23 230-252 30-52 (173)
387 TIGR02173 cyt_kin_arch cytidyl 96.6 0.0019 4.2E-08 59.8 3.9 29 231-259 3-31 (171)
388 smart00487 DEXDc DEAD-like hel 96.6 0.0086 1.9E-07 55.5 8.3 25 229-253 25-50 (201)
389 PF00406 ADK: Adenylate kinase 96.6 0.0017 3.7E-08 59.4 3.4 27 233-259 1-27 (151)
390 PF01745 IPT: Isopentenyl tran 96.6 0.0021 4.6E-08 61.9 4.1 32 230-261 3-34 (233)
391 TIGR01069 mutS2 MutS2 family p 96.6 0.023 4.9E-07 65.6 13.2 63 229-291 323-414 (771)
392 PRK04040 adenylate kinase; Pro 96.6 0.0022 4.8E-08 61.2 4.2 29 229-257 3-33 (188)
393 PF12780 AAA_8: P-loop contain 96.6 0.0062 1.3E-07 61.4 7.5 84 195-289 9-99 (268)
394 smart00534 MUTSac ATPase domai 96.6 0.0065 1.4E-07 57.7 7.4 62 231-292 2-91 (185)
395 TIGR01613 primase_Cterm phage/ 96.6 0.0098 2.1E-07 61.1 9.2 82 199-290 54-139 (304)
396 PF10236 DAP3: Mitochondrial r 96.6 0.052 1.1E-06 55.9 14.5 22 388-409 258-279 (309)
397 cd03238 ABC_UvrA The excision 96.6 0.0043 9.3E-08 58.6 5.9 22 229-250 22-43 (176)
398 PRK01184 hypothetical protein; 96.6 0.0021 4.6E-08 60.7 3.8 29 230-259 3-31 (184)
399 PF13479 AAA_24: AAA domain 96.5 0.0018 3.8E-08 63.1 3.2 62 230-294 5-83 (213)
400 cd03227 ABC_Class2 ABC-type Cl 96.5 0.005 1.1E-07 57.1 6.1 64 229-292 22-112 (162)
401 PRK10436 hypothetical protein; 96.5 0.0091 2E-07 64.8 8.9 85 191-290 195-298 (462)
402 COG3854 SpoIIIAA ncharacterize 96.5 0.005 1.1E-07 59.9 6.1 27 229-255 138-164 (308)
403 PRK14526 adenylate kinase; Pro 96.5 0.0025 5.4E-08 62.0 4.1 28 231-258 3-30 (211)
404 cd03287 ABC_MSH3_euk MutS3 hom 96.5 0.0097 2.1E-07 58.4 8.2 62 229-290 32-121 (222)
405 COG0563 Adk Adenylate kinase a 96.5 0.0026 5.5E-08 60.3 4.0 29 230-260 2-30 (178)
406 TIGR02538 type_IV_pilB type IV 96.5 0.013 2.9E-07 65.3 10.2 85 191-290 293-396 (564)
407 COG3283 TyrR Transcriptional r 96.5 0.025 5.4E-07 58.4 11.1 96 185-291 195-305 (511)
408 PF02367 UPF0079: Uncharacteri 96.5 0.012 2.6E-07 52.3 7.8 63 229-291 16-100 (123)
409 PRK10646 ADP-binding protein; 96.5 0.019 4.1E-07 52.9 9.4 62 230-291 30-113 (153)
410 PLN02199 shikimate kinase 96.5 0.0053 1.2E-07 62.3 6.3 33 228-260 102-134 (303)
411 KOG1051 Chaperone HSP104 and r 96.5 0.017 3.7E-07 66.5 11.0 127 228-404 208-360 (898)
412 COG0467 RAD55 RecA-superfamily 96.5 0.0069 1.5E-07 60.7 7.0 51 224-276 19-72 (260)
413 cd03222 ABC_RNaseL_inhibitor T 96.4 0.0064 1.4E-07 57.5 6.3 64 229-292 26-102 (177)
414 COG2804 PulE Type II secretory 96.4 0.0036 7.7E-08 67.4 5.0 86 190-290 234-338 (500)
415 PHA02530 pseT polynucleotide k 96.4 0.0028 6E-08 64.7 4.0 30 229-258 3-33 (300)
416 TIGR02533 type_II_gspE general 96.4 0.013 2.7E-07 64.3 9.3 86 190-290 218-322 (486)
417 cd02027 APSK Adenosine 5'-phos 96.4 0.0038 8.2E-08 57.2 4.4 29 231-259 2-33 (149)
418 PRK06696 uridine kinase; Valid 96.4 0.01 2.2E-07 58.1 7.5 38 229-266 23-63 (223)
419 PF00519 PPV_E1_C: Papillomavi 96.4 0.0065 1.4E-07 63.5 6.3 61 224-290 258-318 (432)
420 TIGR02788 VirB11 P-type DNA tr 96.4 0.0092 2E-07 61.5 7.4 26 228-253 144-169 (308)
421 PRK09302 circadian clock prote 96.3 0.017 3.7E-07 63.7 9.9 39 224-262 27-69 (509)
422 TIGR01420 pilT_fam pilus retra 96.3 0.0096 2.1E-07 62.3 7.4 61 229-289 123-205 (343)
423 PF06745 KaiC: KaiC; InterPro 96.3 0.0045 9.7E-08 60.5 4.6 39 224-262 15-57 (226)
424 PF06431 Polyoma_lg_T_C: Polyo 96.3 0.0067 1.4E-07 62.8 5.9 148 201-402 136-293 (417)
425 TIGR03574 selen_PSTK L-seryl-t 96.3 0.0042 9.1E-08 61.8 4.4 30 231-260 2-34 (249)
426 KOG3354 Gluconate kinase [Carb 96.3 0.0037 8E-08 57.1 3.5 34 226-259 10-43 (191)
427 COG3267 ExeA Type II secretory 96.3 0.18 3.8E-06 50.1 15.4 56 384-440 190-248 (269)
428 PHA00350 putative assembly pro 96.3 0.016 3.5E-07 61.4 8.8 62 231-293 4-95 (399)
429 cd03286 ABC_MSH6_euk MutS6 hom 96.3 0.014 3.1E-07 57.0 7.9 62 229-290 31-120 (218)
430 PRK10078 ribose 1,5-bisphospho 96.3 0.0036 7.9E-08 59.4 3.7 29 230-258 4-32 (186)
431 cd03223 ABCD_peroxisomal_ALDP 96.3 0.028 6E-07 52.4 9.6 24 229-252 28-51 (166)
432 PRK13900 type IV secretion sys 96.3 0.0099 2.1E-07 61.9 7.1 63 228-290 160-246 (332)
433 PRK00409 recombination and DNA 96.3 0.017 3.8E-07 66.7 9.8 63 229-291 328-419 (782)
434 COG4133 CcmA ABC-type transpor 96.3 0.015 3.2E-07 55.1 7.5 33 220-252 18-52 (209)
435 PRK12339 2-phosphoglycerate ki 96.3 0.0045 9.8E-08 59.6 4.2 28 229-256 4-31 (197)
436 TIGR03878 thermo_KaiC_2 KaiC d 96.2 0.0054 1.2E-07 61.6 4.9 39 224-262 32-73 (259)
437 TIGR01448 recD_rel helicase, p 96.2 0.027 5.8E-07 64.7 10.8 63 229-291 339-428 (720)
438 cd03239 ABC_SMC_head The struc 96.2 0.015 3.3E-07 55.0 7.3 24 230-253 24-47 (178)
439 PRK00771 signal recognition pa 96.2 0.021 4.6E-07 61.5 9.3 60 201-261 69-131 (437)
440 PRK14529 adenylate kinase; Pro 96.2 0.0035 7.5E-08 61.5 3.0 29 231-259 3-31 (223)
441 KOG2383 Predicted ATPase [Gene 96.2 0.015 3.3E-07 60.7 7.7 24 227-250 113-136 (467)
442 cd03284 ABC_MutS1 MutS1 homolo 96.2 0.012 2.6E-07 57.5 6.6 62 229-290 31-120 (216)
443 TIGR00376 DNA helicase, putati 96.1 0.01 2.2E-07 67.1 7.0 35 229-263 174-211 (637)
444 PLN02674 adenylate kinase 96.1 0.0056 1.2E-07 60.8 4.3 31 229-259 32-62 (244)
445 TIGR00416 sms DNA repair prote 96.1 0.012 2.6E-07 63.9 7.2 69 224-292 90-183 (454)
446 TIGR03877 thermo_KaiC_1 KaiC d 96.1 0.008 1.7E-07 59.4 5.4 48 224-273 17-67 (237)
447 PF09848 DUF2075: Uncharacteri 96.1 0.01 2.3E-07 62.2 6.3 24 229-252 2-25 (352)
448 PF03266 NTPase_1: NTPase; In 96.1 0.005 1.1E-07 57.8 3.5 22 231-252 2-23 (168)
449 PRK12727 flagellar biosynthesi 96.1 0.024 5.2E-07 62.1 9.0 26 227-252 349-374 (559)
450 cd02022 DPCK Dephospho-coenzym 96.0 0.0063 1.4E-07 57.4 4.0 29 231-260 2-30 (179)
451 cd00561 CobA_CobO_BtuR ATP:cor 96.0 0.068 1.5E-06 49.6 10.7 28 231-258 5-35 (159)
452 TIGR02524 dot_icm_DotB Dot/Icm 96.0 0.0099 2.2E-07 62.5 5.8 24 229-252 135-158 (358)
453 PF01443 Viral_helicase1: Vira 96.0 0.0046 9.9E-08 60.4 3.0 22 231-252 1-22 (234)
454 PLN02459 probable adenylate ki 96.0 0.008 1.7E-07 60.2 4.6 30 230-259 31-60 (261)
455 cd01128 rho_factor Transcripti 96.0 0.014 3E-07 58.3 6.3 26 229-254 17-42 (249)
456 PRK12338 hypothetical protein; 96.0 0.0067 1.4E-07 62.5 4.1 29 228-256 4-32 (319)
457 PRK14021 bifunctional shikimat 96.0 0.0068 1.5E-07 67.3 4.5 31 230-260 8-38 (542)
458 TIGR02322 phosphon_PhnN phosph 96.0 0.0057 1.2E-07 57.4 3.4 25 230-254 3-27 (179)
459 PF05970 PIF1: PIF1-like helic 96.0 0.015 3.1E-07 61.4 6.8 28 228-255 22-49 (364)
460 cd03214 ABC_Iron-Siderophores_ 96.0 0.014 3E-07 55.1 6.0 24 229-252 26-49 (180)
461 PF13555 AAA_29: P-loop contai 96.0 0.0078 1.7E-07 46.7 3.4 23 230-252 25-47 (62)
462 PRK09825 idnK D-gluconate kina 95.9 0.0068 1.5E-07 57.2 3.6 26 230-255 5-30 (176)
463 TIGR02236 recomb_radA DNA repa 95.9 0.019 4.1E-07 59.1 7.2 52 224-275 91-151 (310)
464 PRK05541 adenylylsulfate kinas 95.9 0.0074 1.6E-07 56.6 3.8 25 229-253 8-32 (176)
465 PF00488 MutS_V: MutS domain V 95.9 0.04 8.7E-07 54.5 9.2 62 229-290 44-133 (235)
466 PRK13889 conjugal transfer rel 95.9 0.034 7.3E-07 65.5 9.9 62 230-291 364-445 (988)
467 TIGR02655 circ_KaiC circadian 95.9 0.017 3.7E-07 63.3 7.0 49 224-274 17-69 (484)
468 TIGR02655 circ_KaiC circadian 95.9 0.018 3.9E-07 63.1 7.2 37 224-260 259-298 (484)
469 PRK13808 adenylate kinase; Pro 95.8 0.0075 1.6E-07 62.5 3.8 29 231-259 3-31 (333)
470 TIGR03819 heli_sec_ATPase heli 95.8 0.022 4.8E-07 59.5 7.3 62 228-289 178-263 (340)
471 KOG0477 DNA replication licens 95.8 0.0084 1.8E-07 65.5 4.2 63 230-292 484-559 (854)
472 PF01583 APS_kinase: Adenylyls 95.8 0.012 2.6E-07 54.4 4.7 33 230-262 4-39 (156)
473 PRK11545 gntK gluconate kinase 95.8 0.0069 1.5E-07 56.4 3.2 26 234-259 1-26 (163)
474 PRK04328 hypothetical protein; 95.8 0.013 2.9E-07 58.3 5.4 49 224-274 19-70 (249)
475 PRK06761 hypothetical protein; 95.8 0.0097 2.1E-07 60.4 4.3 33 229-261 4-36 (282)
476 TIGR03263 guanyl_kin guanylate 95.8 0.0062 1.3E-07 57.1 2.8 26 230-255 3-28 (180)
477 PRK09519 recA DNA recombinatio 95.8 0.025 5.5E-07 64.7 8.0 69 224-292 56-151 (790)
478 PRK00889 adenylylsulfate kinas 95.8 0.013 2.8E-07 54.8 4.9 24 229-252 5-28 (175)
479 COG3378 Phage associated DNA p 95.8 0.057 1.2E-06 59.1 10.3 65 226-290 228-293 (517)
480 PRK13851 type IV secretion sys 95.8 0.023 4.9E-07 59.4 7.0 26 228-253 162-187 (344)
481 PF03029 ATP_bind_1: Conserved 95.7 0.0085 1.8E-07 59.4 3.6 30 233-262 1-33 (238)
482 COG4088 Predicted nucleotide k 95.7 0.0055 1.2E-07 58.7 2.0 66 230-296 3-90 (261)
483 COG4650 RtcR Sigma54-dependent 95.7 0.023 4.9E-07 57.1 6.4 64 228-291 208-294 (531)
484 PF06414 Zeta_toxin: Zeta toxi 95.7 0.011 2.4E-07 56.8 4.1 37 228-264 15-52 (199)
485 cd00984 DnaB_C DnaB helicase C 95.7 0.015 3.2E-07 57.3 5.1 40 224-263 9-52 (242)
486 PRK00300 gmk guanylate kinase; 95.7 0.012 2.5E-07 56.5 4.3 26 228-253 5-30 (205)
487 PLN02165 adenylate isopentenyl 95.7 0.01 2.2E-07 61.4 4.0 32 229-260 44-75 (334)
488 PRK06851 hypothetical protein; 95.7 0.009 2E-07 62.7 3.7 27 227-253 29-55 (367)
489 PRK10416 signal recognition pa 95.7 0.017 3.7E-07 59.8 5.7 51 201-252 87-138 (318)
490 PRK04301 radA DNA repair and r 95.7 0.026 5.7E-07 58.3 7.1 52 224-275 98-158 (317)
491 TIGR03881 KaiC_arch_4 KaiC dom 95.7 0.01 2.2E-07 58.0 3.8 38 224-261 16-56 (229)
492 PRK05480 uridine/cytidine kina 95.6 0.015 3.3E-07 56.0 4.9 33 229-261 7-40 (209)
493 PRK14730 coaE dephospho-CoA ki 95.6 0.011 2.4E-07 56.8 3.8 31 230-260 3-33 (195)
494 PTZ00202 tuzin; Provisional 95.6 0.036 7.7E-07 59.3 7.9 77 189-277 257-333 (550)
495 TIGR00017 cmk cytidylate kinas 95.6 0.012 2.6E-07 57.6 4.1 30 230-259 4-33 (217)
496 PRK13975 thymidylate kinase; P 95.6 0.017 3.7E-07 54.9 5.1 26 230-255 4-29 (196)
497 KOG0481 DNA replication licens 95.6 0.019 4.2E-07 61.5 5.8 62 230-291 366-440 (729)
498 cd02028 UMPK_like Uridine mono 95.6 0.014 3.1E-07 55.2 4.4 34 231-264 2-38 (179)
499 cd01125 repA Hexameric Replica 95.6 0.092 2E-06 51.8 10.3 21 231-251 4-24 (239)
500 PRK14737 gmk guanylate kinase; 95.6 0.012 2.6E-07 56.1 3.7 25 228-252 4-28 (186)
No 1
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-94 Score=736.48 Aligned_cols=426 Identities=48% Similarity=0.803 Sum_probs=390.6
Q ss_pred ChhhHHHHHHHHHH----HHHHhhChHHHHHHHHHHHHHhhhhcCCceEEEEecccCCCCCCcChHHHHHHHHhhccCCC
Q 009640 1 MEILSQMWSLLGLL----TVLQNVLPSQLLSLLHSFYESLQDLFSPYSYFEIPEFNGYCGVDVNDLYRHVNLYLNSVNPA 76 (530)
Q Consensus 1 ~~~~s~~~s~~~~~----~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~i~e~~~~~~~~~n~~~~a~~~yl~~~~~~ 76 (530)
+.+|+.++|++|++ +|+++++|..++.|+.++.++|+.++++|.++.+.|+.| +.+|++|.|+|.||++++..
T Consensus 1 ~~~~~~~~s~~~~~~~~~~~~~~~~p~~~~~y~~~~~~~l~g~~s~~~~~~~~e~~g---~~~n~~~~aie~yl~~k~~~ 77 (457)
T KOG0743|consen 1 SSVFTAYASLLGSLMFIKSMLQDIIPPSINPYFISALRGLFGVFSSYALIRIGEQDG---VFRNQLYVAIEVYLSSKSSA 77 (457)
T ss_pred CCccchhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhccCcccEEEEeehhcc---chHHHHHHHHHHhhhccchh
Confidence 45777777777744 999999999999999999999999999999999999987 49999999999999999777
Q ss_pred CCccccceeecccCCCCceEEEeCCCCeEeecccCeEEEEEEEeeccccc-----ccccceEEEecccchhhhhHHHHHH
Q 009640 77 GSSTCRRLTLSRSRSSNRISFTVAPNHTVHDSFSGHSLSWTHHVDTVQDS-----VEEKRSFTLKLPKRHRQTLLSAYLD 151 (530)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d~f~g~~~~w~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~vl~~yl~ 151 (530)
.+ +|++.+...+++++++.+++|++|.|.|+|++++|.+.+...... ..++|+|+|+|++++++.|+.+||+
T Consensus 78 ~~---~rl~~~~~~~s~~~~l~~~~~~~i~d~f~gv~~~w~~~~~~~~~~~~~~~~~~~r~~~L~f~k~~~e~V~~syl~ 154 (457)
T KOG0743|consen 78 IA---KRLTQNLSKNSKSLVLGLDDNEEISDEFEGVPVKWRHFVDYNEKWIFVEREREKRYFELTFHKKPRELVTLSYLP 154 (457)
T ss_pred hh---hhhhhhhccccccceEEecCCcEEEEEEeceEEEEEEEEEecCcccccccCCcceEEEEEecCccHHHhHHhHHH
Confidence 65 799999999999999999999999999999999999987654432 5678999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhccccCCCCC----CCCCccccCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCC
Q 009640 152 HVTSRAEEFERVSRERRLFTNNGHGS----YDSGWVSVPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAW 227 (530)
Q Consensus 152 ~v~~~~~~~~~~~~~~~l~~~~~~~~----~~~~w~~~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~ 227 (530)
++...+++|.++++++++|++.+... ....|.++++.||++|++|+|++++|+.|++|+..|+++++||+++|+||
T Consensus 155 ~v~~~~k~I~~~~r~~kl~t~~~~~~~~~~~~~~W~~v~f~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkaw 234 (457)
T KOG0743|consen 155 YVVSKAKEILEENRELKLYTNSGKTVIYTAKGGEWRSVGFPHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAW 234 (457)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcccccccCCcceecCCCCCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcch
Confidence 99999999999999999999976433 35679999999999999999999999999999999999999999999999
Q ss_pred CceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccCChHHHHHHHHhcCCCeEEEEcCccchhhhhhhhhhcccCCcc
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVTDNSELRALLLQTTNRSIIVIEDIDCSVDLTADRMLKSSNTST 307 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~~~~~L~~l~~~~~~~sII~IDeID~~~~~~~~r~~~~~~~~~ 307 (530)
+||||||||||||||||++||||+|++++|+++++++.++++|++||..++++||||||||||.++++.++..+.+.
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n~dLr~LL~~t~~kSIivIEDIDcs~~l~~~~~~~~~~--- 311 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLDSDLRHLLLATPNKSILLIEDIDCSFDLRERRKKKKEN--- 311 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCcHHHHHHHHhCCCCcEEEEeeccccccccccccccccc---
Confidence 99999999999999999999999999999999999999999999999999999999999999999888876553210
Q ss_pred ccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeE
Q 009640 308 TAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDV 387 (530)
Q Consensus 308 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~ 387 (530)
.....+++|+|||||++||+||+|+++|||||||||+++|||||+||||||+
T Consensus 312 ----------------------------~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDm 363 (457)
T KOG0743|consen 312 ----------------------------FEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDM 363 (457)
T ss_pred ----------------------------ccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCccee
Confidence 0113478999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHhhCCcC-ccchHHHHHHHHHhCCCCCHHHHHHHHHHhccCHHHHHHHHHHHHHHhhhcccc
Q 009640 388 HVSLGTCGPHAFKVLAKNYLGIES-HHALFDVVESCIRAGGALTPAQIGEVLLRNRGNVDLAMKEVVSAMQAKILSGRE 465 (530)
Q Consensus 388 ~I~~~~p~~~~r~~i~~~~l~~~~-~~~~~~~i~~l~~~~~~~spadi~~~l~~~~~d~~~al~~l~~~l~~~~~~~~~ 465 (530)
||+|++|++++++.|+++||+... |. ++++++++.. +..+|||||++.+|+++.|++.|++++++.++.++.....
T Consensus 364 hI~mgyCtf~~fK~La~nYL~~~~~h~-L~~eie~l~~-~~~~tPA~V~e~lm~~~~dad~~lk~Lv~~l~~~~~~~~~ 440 (457)
T KOG0743|consen 364 HIYMGYCTFEAFKTLASNYLGIEEDHR-LFDEIERLIE-ETEVTPAQVAEELMKNKNDADVALKGLVEALESKKEKRNK 440 (457)
T ss_pred EEEcCCCCHHHHHHHHHHhcCCCCCcc-hhHHHHHHhh-cCccCHHHHHHHHhhccccHHHHHHHHHHHHHhhhhhhcc
Confidence 999999999999999999999975 77 9999999776 6999999999999999989999999999999988764433
No 2
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-44 Score=361.68 Aligned_cols=220 Identities=25% Similarity=0.287 Sum_probs=191.0
Q ss_pred cCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCcc
Q 009640 185 VPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKV 264 (530)
Q Consensus 185 ~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~ 264 (530)
+...+..+|++|+|.++++++|++.++.++.+|+.|.++|+.+|+|+|||||||||||.||+|+|++.+..|+.+..+++
T Consensus 142 v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSEl 221 (406)
T COG1222 142 VEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSEL 221 (406)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHH
Confidence 55678889999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred C------ChHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCC
Q 009640 265 T------DNSELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNN 336 (530)
Q Consensus 265 ~------~~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 336 (530)
. +..-++.+|.-+ .+||||||||||++. .+|.++ +.+
T Consensus 222 VqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg------------------~kR~d~-----------------~t~ 266 (406)
T COG1222 222 VQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIG------------------AKRFDS-----------------GTS 266 (406)
T ss_pred HHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhh------------------cccccC-----------------CCC
Confidence 2 334467787755 799999999999983 233221 113
Q ss_pred CCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCccchH
Q 009640 337 GEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHHALF 416 (530)
Q Consensus 337 ~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~ 416 (530)
++..-++|+-+|||+|||+.+ .+++=|||+||+++.|||||+||||||++|+||+||.++|..||+.+.........
T Consensus 267 gDrEVQRTmleLL~qlDGFD~--~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~d- 343 (406)
T COG1222 267 GDREVQRTMLELLNQLDGFDP--RGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADD- 343 (406)
T ss_pred chHHHHHHHHHHHHhccCCCC--CCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccC-
Confidence 456678899999999999987 58899999999999999999999999999999999999999999999886554422
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHhc
Q 009640 417 DVVESCIRAGGALTPAQIGEVLLRNR 442 (530)
Q Consensus 417 ~~i~~l~~~~~~~spadi~~~l~~~~ 442 (530)
-.++.++..+.++|+|||+.+|..+.
T Consensus 344 vd~e~la~~~~g~sGAdlkaictEAG 369 (406)
T COG1222 344 VDLELLARLTEGFSGADLKAICTEAG 369 (406)
T ss_pred cCHHHHHHhcCCCchHHHHHHHHHHh
Confidence 23788888899999999999997654
No 3
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-41 Score=356.61 Aligned_cols=244 Identities=22% Similarity=0.268 Sum_probs=205.4
Q ss_pred CCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCcc-
Q 009640 186 PFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKV- 264 (530)
Q Consensus 186 ~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~- 264 (530)
...++.+|++|+|.+++|+++.+.+..++++++.|.++|+.+++|+|||||||||||++|+|+|++.+.+|+.+...++
T Consensus 426 ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~ 505 (693)
T KOG0730|consen 426 VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELF 505 (693)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHH
Confidence 3457889999999999999999999999999999999999999999999999999999999999999999999976655
Q ss_pred -----CChHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCC
Q 009640 265 -----TDNSELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNG 337 (530)
Q Consensus 265 -----~~~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 337 (530)
.++..++++|.++ .+||||||||||++.. + |.. +.
T Consensus 506 sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~---~---------------R~g--------------------~~ 547 (693)
T KOG0730|consen 506 SKYVGESERAIREVFRKARQVAPCIIFFDEIDALAG---S---------------RGG--------------------SS 547 (693)
T ss_pred HHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhh---c---------------cCC--------------------Cc
Confidence 3567799999987 6899999999999842 1 110 12
Q ss_pred CcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCccchHH
Q 009640 338 EESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHHALFD 417 (530)
Q Consensus 338 ~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~ 417 (530)
.....+++++||++|||+.. ..+++||++||+|+.||+||+||||||+.|++++||.++|.+|++.++........ .
T Consensus 548 ~~v~~RVlsqLLtEmDG~e~--~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~-v 624 (693)
T KOG0730|consen 548 SGVTDRVLSQLLTEMDGLEA--LKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSED-V 624 (693)
T ss_pred cchHHHHHHHHHHHcccccc--cCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCcc-c
Confidence 35678899999999999986 46899999999999999999999999999999999999999999999987665523 4
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHhccCHHHHHHHHHHHHHHhhhccccccccccccccC
Q 009640 418 VVESCIRAGGALTPAQIGEVLLRNRGNVDLAMKEVVSAMQAKILSGREVMECDELVITR 476 (530)
Q Consensus 418 ~i~~l~~~~~~~spadi~~~l~~~~~d~~~al~~l~~~l~~~~~~~~~~~~~~~~~~~~ 476 (530)
.+++++..|.+||+|||.++|..+. +-.+.+.++...+...++.++...++++
T Consensus 625 dl~~La~~T~g~SGAel~~lCq~A~------~~a~~e~i~a~~i~~~hf~~al~~~r~s 677 (693)
T KOG0730|consen 625 DLEELAQATEGYSGAEIVAVCQEAA------LLALRESIEATEITWQHFEEALKAVRPS 677 (693)
T ss_pred cHHHHHHHhccCChHHHHHHHHHHH------HHHHHHhcccccccHHHHHHHHHhhccc
Confidence 5889999999999999999997543 3333444444555566666666555443
No 4
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.4e-40 Score=338.19 Aligned_cols=211 Identities=25% Similarity=0.340 Sum_probs=185.5
Q ss_pred CCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCcc----
Q 009640 189 HPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKV---- 264 (530)
Q Consensus 189 ~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~---- 264 (530)
...+|+++-|.++.|+++.+ +..|+++|..|.++|-..|+|+||.||||||||+||+|+|.+.+.+||..+.+++
T Consensus 299 ~nv~F~dVkG~DEAK~ELeE-iVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~ 377 (752)
T KOG0734|consen 299 KNVTFEDVKGVDEAKQELEE-IVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMF 377 (752)
T ss_pred cccccccccChHHHHHHHHH-HHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhh
Confidence 35689999999999999988 7899999999999999999999999999999999999999999999999988876
Q ss_pred --CChHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcc
Q 009640 265 --TDNSELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEES 340 (530)
Q Consensus 265 --~~~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (530)
.+...+|.||..+ .+||||||||||++- .+|.. .+...
T Consensus 378 VGvGArRVRdLF~aAk~~APcIIFIDEiDavG------------------~kR~~--------------------~~~~y 419 (752)
T KOG0734|consen 378 VGVGARRVRDLFAAAKARAPCIIFIDEIDAVG------------------GKRNP--------------------SDQHY 419 (752)
T ss_pred hcccHHHHHHHHHHHHhcCCeEEEEechhhhc------------------ccCCc--------------------cHHHH
Confidence 3677899999977 789999999999983 12221 11226
Q ss_pred hhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCccchHHHHH
Q 009640 341 GRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHHALFDVVE 420 (530)
Q Consensus 341 ~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~i~ 420 (530)
.+.|+++||..|||+.. ++++|||++||.|+.||+||+||||||+||.+|.||...|.+|++.|+....+.... +..
T Consensus 420 ~kqTlNQLLvEmDGF~q--NeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~V-D~~ 496 (752)
T KOG0734|consen 420 AKQTLNQLLVEMDGFKQ--NEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDV-DPK 496 (752)
T ss_pred HHHHHHHHHHHhcCcCc--CCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCC-CHh
Confidence 78899999999999987 589999999999999999999999999999999999999999999999876655222 366
Q ss_pred HHHHhCCCCCHHHHHHHHHHh
Q 009640 421 SCIRAGGALTPAQIGEVLLRN 441 (530)
Q Consensus 421 ~l~~~~~~~spadi~~~l~~~ 441 (530)
-+++.|.||++||+++++..+
T Consensus 497 iiARGT~GFsGAdLaNlVNqA 517 (752)
T KOG0734|consen 497 IIARGTPGFSGADLANLVNQA 517 (752)
T ss_pred HhccCCCCCchHHHHHHHHHH
Confidence 778889999999999998643
No 5
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-39 Score=337.75 Aligned_cols=222 Identities=24% Similarity=0.313 Sum_probs=189.3
Q ss_pred CCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCcc-----
Q 009640 190 PSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKV----- 264 (530)
Q Consensus 190 ~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~----- 264 (530)
...|++|+|.+....++.+.+.. +.+|+.|..+|..++||+|||||||||||+||+|+|++++.+|+.++.+++
T Consensus 186 nv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvS 264 (802)
T KOG0733|consen 186 NVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVS 264 (802)
T ss_pred CcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccC
Confidence 45899999999999999886665 999999999999999999999999999999999999999999999998876
Q ss_pred -CChHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcch
Q 009640 265 -TDNSELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESG 341 (530)
Q Consensus 265 -~~~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (530)
.++..++.+|.++ .+||||||||||++- ++|.... .+..
T Consensus 265 GESEkkiRelF~~A~~~aPcivFiDeIDAI~------------------pkRe~aq--------------------reME 306 (802)
T KOG0733|consen 265 GESEKKIRELFDQAKSNAPCIVFIDEIDAIT------------------PKREEAQ--------------------REME 306 (802)
T ss_pred cccHHHHHHHHHHHhccCCeEEEeecccccc------------------cchhhHH--------------------HHHH
Confidence 3577899999998 689999999999983 3444332 3345
Q ss_pred hhhHHHHhhhccCCccCC--CCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCccchHHHH
Q 009640 342 RVTLSGLLNFTDGLWSCC--SEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHHALFDVV 419 (530)
Q Consensus 342 ~~~ls~LLn~lDgl~s~~--~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~i 419 (530)
++++++||+.||++.... +..++||+|||+|+.|||||+|+||||+.|.+..|+..+|..|++.++....+...+ ..
T Consensus 307 rRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~-d~ 385 (802)
T KOG0733|consen 307 RRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDF-DF 385 (802)
T ss_pred HHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCc-CH
Confidence 778999999999997542 577999999999999999999999999999999999999999999998765555233 36
Q ss_pred HHHHHhCCCCCHHHHHHHHHHhccCHHHHHHHHHH
Q 009640 420 ESCIRAGGALTPAQIGEVLLRNRGNVDLAMKEVVS 454 (530)
Q Consensus 420 ~~l~~~~~~~spadi~~~l~~~~~d~~~al~~l~~ 454 (530)
.++|..|.||.+||+..+|..+. ..|++++.+
T Consensus 386 ~qlA~lTPGfVGADL~AL~~~Aa---~vAikR~ld 417 (802)
T KOG0733|consen 386 KQLAKLTPGFVGADLMALCREAA---FVAIKRILD 417 (802)
T ss_pred HHHHhcCCCccchhHHHHHHHHH---HHHHHHHhh
Confidence 77888899999999999987654 455555443
No 6
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-38 Score=331.53 Aligned_cols=224 Identities=21% Similarity=0.301 Sum_probs=187.8
Q ss_pred CCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCcc---
Q 009640 188 RHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKV--- 264 (530)
Q Consensus 188 ~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~--- 264 (530)
.+..+|++|++.++++.++...+..++++|+.|+.+|+..+.|+|||||||||||.||+|+||+.+.+|+.+...++
T Consensus 505 VPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNk 584 (802)
T KOG0733|consen 505 VPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNK 584 (802)
T ss_pred cCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999986554
Q ss_pred ---CChHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCc
Q 009640 265 ---TDNSELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEE 339 (530)
Q Consensus 265 ---~~~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (530)
.++..+|.+|.++ ++||||||||||++.+. |++ ....
T Consensus 585 YVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~------------------R~~--------------------~~s~ 626 (802)
T KOG0733|consen 585 YVGESERAVRQVFQRARASAPCVIFFDEIDALVPR------------------RSD--------------------EGSS 626 (802)
T ss_pred HhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcc------------------cCC--------------------CCch
Confidence 2455689999987 78999999999998532 211 2345
Q ss_pred chhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCccc-hHHH
Q 009640 340 SGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHHA-LFDV 418 (530)
Q Consensus 340 ~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~-~~~~ 418 (530)
.+.+++++||..|||+.. ..++.||++||+|+.+|||++||||||+.+++++|+.++|..|++........+. ..-.
T Consensus 627 ~s~RvvNqLLtElDGl~~--R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVd 704 (802)
T KOG0733|consen 627 VSSRVVNQLLTELDGLEE--RRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVD 704 (802)
T ss_pred hHHHHHHHHHHHhccccc--ccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccC
Confidence 577899999999999976 4789999999999999999999999999999999999999999999987422110 1123
Q ss_pred HHHHHHhC--CCCCHHHHHHHHHHhccCHHHHHHHHHH
Q 009640 419 VESCIRAG--GALTPAQIGEVLLRNRGNVDLAMKEVVS 454 (530)
Q Consensus 419 i~~l~~~~--~~~spadi~~~l~~~~~d~~~al~~l~~ 454 (530)
+++++..+ .+||+|||+.++..+. ..||+.-+.
T Consensus 705 l~eia~~~~c~gftGADLaaLvreAs---i~AL~~~~~ 739 (802)
T KOG0733|consen 705 LDEIARNTKCEGFTGADLAALVREAS---ILALRESLF 739 (802)
T ss_pred HHHHhhcccccCCchhhHHHHHHHHH---HHHHHHHHh
Confidence 55666644 4999999999997655 455554333
No 7
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-38 Score=315.85 Aligned_cols=261 Identities=23% Similarity=0.296 Sum_probs=202.1
Q ss_pred CCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccC---
Q 009640 189 HPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVT--- 265 (530)
Q Consensus 189 ~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~--- 265 (530)
+...|++|+|..+.|+-|.+.+..++.-|++|+.+-.|| +|+|++||||||||+||+|+|.+++..|+.|+.+.+.
T Consensus 207 p~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPW-kgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKw 285 (491)
T KOG0738|consen 207 PNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPW-KGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKW 285 (491)
T ss_pred CCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhccccc-ceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhh
Confidence 445679999999999999999999999999999999999 7999999999999999999999999999999988773
Q ss_pred --ChHHHHHHHHhc---CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcc
Q 009640 266 --DNSELRALLLQT---TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEES 340 (530)
Q Consensus 266 --~~~~L~~l~~~~---~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (530)
....|.++|..+ .+||+|||||||+++. .+++..+++.
T Consensus 286 RGeSEKlvRlLFemARfyAPStIFiDEIDslcs-------------------------------------~RG~s~EHEa 328 (491)
T KOG0738|consen 286 RGESEKLVRLLFEMARFYAPSTIFIDEIDSLCS-------------------------------------QRGGSSEHEA 328 (491)
T ss_pred ccchHHHHHHHHHHHHHhCCceeehhhHHHHHh-------------------------------------cCCCccchhH
Confidence 234466665543 7999999999999852 2222356788
Q ss_pred hhhhHHHHhhhccCCccCCCCC---eEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCccchHH
Q 009640 341 GRVTLSGLLNFTDGLWSCCSEE---KIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHHALFD 417 (530)
Q Consensus 341 ~~~~ls~LLn~lDgl~s~~~~~---~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~ 417 (530)
+++..++||.+|||+.... ++ ++|+++||.||+||+||+| ||.+.|++|+|+.++|..|++..|+..... ..-
T Consensus 329 SRRvKsELLvQmDG~~~t~-e~~k~VmVLAATN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~-~~~ 404 (491)
T KOG0738|consen 329 SRRVKSELLVQMDGVQGTL-ENSKVVMVLAATNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELD-DPV 404 (491)
T ss_pred HHHHHHHHHHHhhcccccc-ccceeEEEEeccCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCC-CCc
Confidence 9999999999999998653 34 6778899999999999999 999999999999999999999999854433 222
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHhccCHHHHHHHHHHHHHHh------------hhccccccccccccccCCCCcccccC
Q 009640 418 VVESCIRAGGALTPAQIGEVLLRNRGNVDLAMKEVVSAMQAK------------ILSGREVMECDELVITRSPESVVVVR 485 (530)
Q Consensus 418 ~i~~l~~~~~~~spadi~~~l~~~~~d~~~al~~l~~~l~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (530)
.++.+++.+.|||++||.++|..+. +-++++.+..+... .....++..+...+.|+. +-..+.
T Consensus 405 ~~~~lae~~eGySGaDI~nvCreAs---m~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSv--s~~d~~ 479 (491)
T KOG0738|consen 405 NLEDLAERSEGYSGADITNVCREAS---MMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPSV--SAADLE 479 (491)
T ss_pred cHHHHHHHhcCCChHHHHHHHHHHH---HHHHHHHHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcCC--CHHHHH
Confidence 3677888889999999999997654 44444333222111 122233333433333322 224566
Q ss_pred CCCcccCCCCC
Q 009640 486 SPENWDSSPGG 496 (530)
Q Consensus 486 ~~~~w~~~~g~ 496 (530)
.+++|.+..|+
T Consensus 480 k~ekW~~efGS 490 (491)
T KOG0738|consen 480 KYEKWMDEFGS 490 (491)
T ss_pred HHHHHHHHhcC
Confidence 67788877765
No 8
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-36 Score=329.44 Aligned_cols=216 Identities=24% Similarity=0.320 Sum_probs=185.9
Q ss_pred CCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCcc---
Q 009640 188 RHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKV--- 264 (530)
Q Consensus 188 ~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~--- 264 (530)
..+.+|.|++|.+++|++|++ +..|+++|+.|.++|...|+|+||+||||||||.||+|+|.+.+.+|+.++.+++
T Consensus 305 ~t~V~FkDVAG~deAK~El~E-~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~ 383 (774)
T KOG0731|consen 305 NTGVKFKDVAGVDEAKEELME-FVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEM 383 (774)
T ss_pred CCCCccccccCcHHHHHHHHH-HHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHH
Confidence 445799999999999999999 7799999999999999999999999999999999999999999999999998886
Q ss_pred ---CChHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCc
Q 009640 265 ---TDNSELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEE 339 (530)
Q Consensus 265 ---~~~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (530)
...+.++.+|..+ .+||||||||||++...++ . ......+.
T Consensus 384 ~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~---G-------------------------------~~~~~~~~ 429 (774)
T KOG0731|consen 384 FVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRG---G-------------------------------KGTGGGQD 429 (774)
T ss_pred hcccchHHHHHHHHHhhccCCeEEEeccccccccccc---c-------------------------------cccCCCCh
Confidence 3578899999877 6899999999999831110 0 00112345
Q ss_pred chhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCccchHHHH
Q 009640 340 SGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHHALFDVV 419 (530)
Q Consensus 340 ~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~i 419 (530)
....++++||..|||..+ ..++||+++||+++.||+||+||||||++|+++.||...|..|++.|+...........+
T Consensus 430 e~e~tlnQll~emDgf~~--~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl 507 (774)
T KOG0731|consen 430 EREQTLNQLLVEMDGFET--SKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDL 507 (774)
T ss_pred HHHHHHHHHHHHhcCCcC--CCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhH
Confidence 567899999999999987 478999999999999999999999999999999999999999999999865443223335
Q ss_pred HHHHHhCCCCCHHHHHHHHHH
Q 009640 420 ESCIRAGGALTPAQIGEVLLR 440 (530)
Q Consensus 420 ~~l~~~~~~~spadi~~~l~~ 440 (530)
..++..|.+|++|||+++|..
T Consensus 508 ~~~a~~t~gf~gadl~n~~ne 528 (774)
T KOG0731|consen 508 SKLASLTPGFSGADLANLCNE 528 (774)
T ss_pred HHHHhcCCCCcHHHHHhhhhH
Confidence 558888999999999999864
No 9
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-36 Score=288.65 Aligned_cols=218 Identities=23% Similarity=0.310 Sum_probs=186.0
Q ss_pred CCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccC-
Q 009640 187 FRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVT- 265 (530)
Q Consensus 187 ~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~- 265 (530)
..+..++.+++|.+-+|++|++.++.++.+.++|+++|+.+|||+|||||||||||+|++|+|++....|+.+..+++.
T Consensus 148 ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvq 227 (408)
T KOG0727|consen 148 EKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ 227 (408)
T ss_pred CCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHH
Confidence 4567799999999999999999999999999999999999999999999999999999999999999999999887762
Q ss_pred -----ChHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCC
Q 009640 266 -----DNSELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGE 338 (530)
Q Consensus 266 -----~~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (530)
+..-++.+|.-+ ++|+||||||||++. ++|.+. + .+.+
T Consensus 228 kylgegprmvrdvfrlakenapsiifideidaia------------------tkrfda----------q-------tgad 272 (408)
T KOG0727|consen 228 KYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIA------------------TKRFDA----------Q-------TGAD 272 (408)
T ss_pred HHhccCcHHHHHHHHHHhccCCcEEEeehhhhHh------------------hhhccc----------c-------cccc
Confidence 445577887654 799999999999983 333322 1 1234
Q ss_pred cchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCccchHHH
Q 009640 339 ESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHHALFDV 418 (530)
Q Consensus 339 ~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~ 418 (530)
..-++.+-.|||+|||+.. ..++-|||+||+.+.|||||+||||+|++|+||+||..+++-+|.......... ....
T Consensus 273 revqril~ellnqmdgfdq--~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls-~~vd 349 (408)
T KOG0727|consen 273 REVQRILIELLNQMDGFDQ--TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLS-DEVD 349 (408)
T ss_pred HHHHHHHHHHHHhccCcCc--ccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCC-cccC
Confidence 5567889999999999987 477999999999999999999999999999999999999999998877665444 2234
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHhc
Q 009640 419 VESCIRAGGALTPAQIGEVLLRNR 442 (530)
Q Consensus 419 i~~l~~~~~~~spadi~~~l~~~~ 442 (530)
++.++...+.+|+|||..+|..+.
T Consensus 350 le~~v~rpdkis~adi~aicqeag 373 (408)
T KOG0727|consen 350 LEDLVARPDKISGADINAICQEAG 373 (408)
T ss_pred HHHHhcCccccchhhHHHHHHHHh
Confidence 777877789999999999997544
No 10
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-36 Score=323.62 Aligned_cols=236 Identities=20% Similarity=0.290 Sum_probs=188.6
Q ss_pred cCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCcc
Q 009640 185 VPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKV 264 (530)
Q Consensus 185 ~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~ 264 (530)
.|..+..+|+||+|.+++|.+|.+.|..++++|++|.. |...+.|+|||||||||||.||+|+|.++..+|..+...++
T Consensus 663 APKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPEL 741 (953)
T KOG0736|consen 663 APKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPEL 741 (953)
T ss_pred CCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHH
Confidence 45678889999999999999999999999999999865 56667899999999999999999999999999999976655
Q ss_pred ------CChHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCC
Q 009640 265 ------TDNSELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNN 336 (530)
Q Consensus 265 ------~~~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 336 (530)
+++.++|++|.++ .+|||||+||+|++.+.+|. + + .
T Consensus 742 LNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~------------------s-------------G-----D 785 (953)
T KOG0736|consen 742 LNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGR------------------S-------------G-----D 785 (953)
T ss_pred HHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCC------------------C-------------C-----C
Confidence 5788999999988 68999999999998532221 1 0 1
Q ss_pred CCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCC-HHHHHHHHHHhhCCcCccch
Q 009640 337 GEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCG-PHAFKVLAKNYLGIESHHAL 415 (530)
Q Consensus 337 ~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~-~~~r~~i~~~~l~~~~~~~~ 415 (530)
......+++|+||.+|||+.......++||++||+||-|||||+||||||+-++++.|+ .+.+..+++.....-..+..
T Consensus 786 SGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLded 865 (953)
T KOG0736|consen 786 SGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDED 865 (953)
T ss_pred ccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCC
Confidence 24567789999999999999655788999999999999999999999999999999884 45566677665543222211
Q ss_pred HHHHHHHHH-hCCCCCHHHHHHHHHHhccCHHHHHHHHHHHHHHhhh
Q 009640 416 FDVVESCIR-AGGALTPAQIGEVLLRNRGNVDLAMKEVVSAMQAKIL 461 (530)
Q Consensus 416 ~~~i~~l~~-~~~~~spadi~~~l~~~~~d~~~al~~l~~~l~~~~~ 461 (530)
.+ +.++|+ -...||+||+-.+|..+. ..|+++.+..++....
T Consensus 866 Vd-L~eiAk~cp~~~TGADlYsLCSdA~---l~AikR~i~~ie~g~~ 908 (953)
T KOG0736|consen 866 VD-LVEIAKKCPPNMTGADLYSLCSDAM---LAAIKRTIHDIESGTI 908 (953)
T ss_pred cC-HHHHHhhCCcCCchhHHHHHHHHHH---HHHHHHHHHHhhhccc
Confidence 11 222332 257999999999997554 6677777776665543
No 11
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-37 Score=298.84 Aligned_cols=221 Identities=26% Similarity=0.305 Sum_probs=186.1
Q ss_pred ccCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCc
Q 009640 184 SVPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTK 263 (530)
Q Consensus 184 ~~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~ 263 (530)
.+...+..+|.+++|.+.+.++|.+.++.++.+|++|...|+.+|+|++|||+||||||.||+|+||.....|..+-.++
T Consensus 175 K~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGse 254 (440)
T KOG0726|consen 175 KVEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSE 254 (440)
T ss_pred ecccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHH
Confidence 35567888999999999999999999999999999999999999999999999999999999999999999998887666
Q ss_pred cC------ChHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCC
Q 009640 264 VT------DNSELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNN 335 (530)
Q Consensus 264 ~~------~~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 335 (530)
+. +..-++++|.-+ .+|||+||||||++- +||-++ ++
T Consensus 255 LiQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiG------------------tKRyds-----------------~S 299 (440)
T KOG0726|consen 255 LIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIG------------------TKRYDS-----------------NS 299 (440)
T ss_pred HHHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhc------------------cccccC-----------------CC
Confidence 52 334467777655 799999999999982 333322 11
Q ss_pred CCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCccch
Q 009640 336 NGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHHAL 415 (530)
Q Consensus 336 ~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~ 415 (530)
++...-++++-.|||++||+.+ .+.+-|||+||+.+.|||||+||||+|++|+|+.||...++.||..+....... .
T Consensus 300 ggerEiQrtmLELLNQldGFds--rgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~-~ 376 (440)
T KOG0726|consen 300 GGEREIQRTMLELLNQLDGFDS--RGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLA-E 376 (440)
T ss_pred ccHHHHHHHHHHHHHhccCccc--cCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchh-c
Confidence 3445567788899999999998 578999999999999999999999999999999999999999998776654333 2
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHhc
Q 009640 416 FDVVESCIRAGGALTPAQIGEVLLRNR 442 (530)
Q Consensus 416 ~~~i~~l~~~~~~~spadi~~~l~~~~ 442 (530)
...++.++...+.+|+|||+.+|..+.
T Consensus 377 dVnle~li~~kddlSGAdIkAictEaG 403 (440)
T KOG0726|consen 377 DVNLEELIMTKDDLSGADIKAICTEAG 403 (440)
T ss_pred cccHHHHhhcccccccccHHHHHHHHh
Confidence 223777777779999999999997654
No 12
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-36 Score=287.81 Aligned_cols=220 Identities=24% Similarity=0.277 Sum_probs=184.3
Q ss_pred cCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCcc
Q 009640 185 VPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKV 264 (530)
Q Consensus 185 ~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~ 264 (530)
+...+..+++.++|.+.+.++|.+.++.+.++|++|..+|++.|+|+|||||||||||.||+|+|++.++.|+.++.+++
T Consensus 138 VeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgsel 217 (404)
T KOG0728|consen 138 VEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSEL 217 (404)
T ss_pred hhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHH
Confidence 44557788999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred C------ChHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCC
Q 009640 265 T------DNSELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNN 336 (530)
Q Consensus 265 ~------~~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 336 (530)
. +..-++.+|.-+ ++|||||+||||++-..+. .++.+
T Consensus 218 vqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~-----------------------------------e~~~g 262 (404)
T KOG0728|consen 218 VQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRV-----------------------------------ESGSG 262 (404)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccc-----------------------------------cCCCC
Confidence 2 334467777655 8999999999999831111 11113
Q ss_pred CCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCccchH
Q 009640 337 GEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHHALF 416 (530)
Q Consensus 337 ~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~ 416 (530)
+++.-+++.-.|||++||+.. ..++-||++||+.+.|||||+||||+|++|+||+|+.++|.+|++.+......- .-
T Consensus 263 gdsevqrtmlellnqldgfea--tknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~-rg 339 (404)
T KOG0728|consen 263 GDSEVQRTMLELLNQLDGFEA--TKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLT-RG 339 (404)
T ss_pred ccHHHHHHHHHHHHhcccccc--ccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchh-cc
Confidence 456678899999999999987 477889999999999999999999999999999999999999999876543321 11
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHhc
Q 009640 417 DVVESCIRAGGALTPAQIGEVLLRNR 442 (530)
Q Consensus 417 ~~i~~l~~~~~~~spadi~~~l~~~~ 442 (530)
-.+..+++...|.|+|+++.+|..+.
T Consensus 340 i~l~kiaekm~gasgaevk~vcteag 365 (404)
T KOG0728|consen 340 INLRKIAEKMPGASGAEVKGVCTEAG 365 (404)
T ss_pred cCHHHHHHhCCCCccchhhhhhhhhh
Confidence 12566777779999999999997654
No 13
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-35 Score=281.09 Aligned_cols=220 Identities=24% Similarity=0.288 Sum_probs=183.8
Q ss_pred cCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCcc
Q 009640 185 VPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKV 264 (530)
Q Consensus 185 ~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~ 264 (530)
+...+..++++++|.+.+.+++.+.+..++.+++.|.++|+.+|+|+|+|||||||||.||+|.|...+..|..+-...+
T Consensus 162 vDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQL 241 (424)
T KOG0652|consen 162 VDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQL 241 (424)
T ss_pred eccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHH
Confidence 44567778999999999999999999999999999999999999999999999999999999999999988877754443
Q ss_pred -----CChH-HHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCC
Q 009640 265 -----TDNS-ELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNN 336 (530)
Q Consensus 265 -----~~~~-~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 336 (530)
.+.. -++..|.-+ .+|+||||||+|++- +||.++ ...
T Consensus 242 VQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIG------------------tKRfDS-----------------ek~ 286 (424)
T KOG0652|consen 242 VQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIG------------------TKRFDS-----------------EKA 286 (424)
T ss_pred HhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhc------------------cccccc-----------------ccc
Confidence 2333 356666544 789999999999982 344333 113
Q ss_pred CCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCccchH
Q 009640 337 GEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHHALF 416 (530)
Q Consensus 337 ~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~ 416 (530)
++...++++-.|||++||+.+ .+.+-||++||+.+.|||||+|.||+|++|+||.|+.++|..|++.+....... ..
T Consensus 287 GDREVQRTMLELLNQLDGFss--~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~-~D 363 (424)
T KOG0652|consen 287 GDREVQRTMLELLNQLDGFSS--DDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVS-DD 363 (424)
T ss_pred ccHHHHHHHHHHHHhhcCCCC--ccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCC-CC
Confidence 455677889999999999998 578889999999999999999999999999999999999999999887754433 22
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHhc
Q 009640 417 DVVESCIRAGGALTPAQIGEVLLRNR 442 (530)
Q Consensus 417 ~~i~~l~~~~~~~spadi~~~l~~~~ 442 (530)
...++|+..+++|.+|+.+.+|..+.
T Consensus 364 vNfeELaRsTddFNGAQcKAVcVEAG 389 (424)
T KOG0652|consen 364 VNFEELARSTDDFNGAQCKAVCVEAG 389 (424)
T ss_pred CCHHHHhhcccccCchhheeeehhhh
Confidence 23678888899999999999887554
No 14
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=3.6e-34 Score=301.43 Aligned_cols=219 Identities=21% Similarity=0.295 Sum_probs=181.8
Q ss_pred CCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccC
Q 009640 186 PFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVT 265 (530)
Q Consensus 186 ~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~ 265 (530)
...+..+|++|+|.+.+|++|.+.+..++.+++.|.++|+++++|+|||||||||||++++++|++++.+++.+..+.+.
T Consensus 137 ~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~ 216 (398)
T PTZ00454 137 SEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFV 216 (398)
T ss_pred cCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHH
Confidence 34577899999999999999999999999999999999999999999999999999999999999999999998765541
Q ss_pred ------ChHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCC
Q 009640 266 ------DNSELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNG 337 (530)
Q Consensus 266 ------~~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 337 (530)
+...++.+|..+ .+||||||||||+++..+ .+. ..+.
T Consensus 217 ~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r------------------~~~-----------------~~~~ 261 (398)
T PTZ00454 217 QKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKR------------------FDA-----------------QTGA 261 (398)
T ss_pred HHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhcccc------------------ccc-----------------cCCc
Confidence 234577777654 789999999999985211 000 0011
Q ss_pred CcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCccchHH
Q 009640 338 EESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHHALFD 417 (530)
Q Consensus 338 ~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~ 417 (530)
+.....++..||+.+||+.. ..+++||+|||+++.||||++||||||.+|+|++|+.++|..|++.++...... ...
T Consensus 262 d~~~~r~l~~LL~~ld~~~~--~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~-~dv 338 (398)
T PTZ00454 262 DREVQRILLELLNQMDGFDQ--TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLS-EEV 338 (398)
T ss_pred cHHHHHHHHHHHHHhhccCC--CCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCC-ccc
Confidence 23345688999999999876 367899999999999999999999999999999999999999999998754433 222
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHhc
Q 009640 418 VVESCIRAGGALTPAQIGEVLLRNR 442 (530)
Q Consensus 418 ~i~~l~~~~~~~spadi~~~l~~~~ 442 (530)
.+..++..+.+||||||..+|..+.
T Consensus 339 d~~~la~~t~g~sgaDI~~l~~eA~ 363 (398)
T PTZ00454 339 DLEDFVSRPEKISAADIAAICQEAG 363 (398)
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 3677888899999999999997654
No 15
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6e-35 Score=284.44 Aligned_cols=262 Identities=23% Similarity=0.293 Sum_probs=204.7
Q ss_pred CCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccC-
Q 009640 187 FRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVT- 265 (530)
Q Consensus 187 ~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~- 265 (530)
..+...|++|+|.+..|+.+.+.+..+++-|.+|..-..|| +|+|||||||||||.||+|+|.+.+..|+.++.+++.
T Consensus 126 EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~Pw-rgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvS 204 (439)
T KOG0739|consen 126 EKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPW-RGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 204 (439)
T ss_pred cCCCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcc-eeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHH
Confidence 35667889999999999999999999999999999888888 8999999999999999999999999999999988763
Q ss_pred -----ChHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCC
Q 009640 266 -----DNSELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGE 338 (530)
Q Consensus 266 -----~~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (530)
++.-++.||.-+ +.||||||||||++.+. | +.+++
T Consensus 205 KWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~---r-----------------------------------~enEs 246 (439)
T KOG0739|consen 205 KWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGS---R-----------------------------------SENES 246 (439)
T ss_pred HHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccC---C-----------------------------------CCCch
Confidence 233456676644 79999999999987421 1 11345
Q ss_pred cchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCccchHHH
Q 009640 339 ESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHHALFDV 418 (530)
Q Consensus 339 ~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~ 418 (530)
+.++++...||.+|.|+-.. .++++|+++||-|+.||.|++| ||++.|++|+|+..+|..+|+.++|...|......
T Consensus 247 easRRIKTEfLVQMqGVG~d-~~gvLVLgATNiPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d 323 (439)
T KOG0739|consen 247 EASRRIKTEFLVQMQGVGND-NDGVLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQD 323 (439)
T ss_pred HHHHHHHHHHHHhhhccccC-CCceEEEecCCCchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhh
Confidence 66788899999999999764 6889999999999999999999 99999999999999999999999999999866778
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHhccCHHHHHHHHHHHHHHhhhccc-cccccccccccCCCCcccccCCCCcccCCCC
Q 009640 419 VESCIRAGGALTPAQIGEVLLRNRGNVDLAMKEVVSAMQAKILSGR-EVMECDELVITRSPESVVVVRSPENWDSSPG 495 (530)
Q Consensus 419 i~~l~~~~~~~spadi~~~l~~~~~d~~~al~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~g 495 (530)
+..|+..|+|||++||.-++..+- +..++.+..+..-++.... +......+.+|-+|.+...++. .|.+..+
T Consensus 324 ~~eL~~kTeGySGsDisivVrDal---mePvRkvqsAthFk~v~~~s~~~~~~~lltpcspgd~ga~em--~w~dv~~ 396 (439)
T KOG0739|consen 324 FKELARKTEGYSGSDISIVVRDAL---MEPVRKVQSATHFKKVSGPSNPSEVDDLLTPCSPGDPGAIEM--SWMDVPA 396 (439)
T ss_pred HHHHHhhcCCCCcCceEEEehhhh---hhhHHHhhhhhhhhccCCCCChhhhccccCCCCCCCcchhhh--hhccCCH
Confidence 999999999999999976654322 3344555555544443321 1111234444444444333332 3555544
No 16
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=4.8e-34 Score=306.30 Aligned_cols=268 Identities=20% Similarity=0.292 Sum_probs=191.4
Q ss_pred CCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCc----------E
Q 009640 187 FRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYD----------V 256 (530)
Q Consensus 187 ~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~----------i 256 (530)
..++.+|++|+|.+..+++|.+.+..++.+++.|...|+++++|+|||||||||||++++|+|++++.+ +
T Consensus 175 ~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~f 254 (512)
T TIGR03689 175 EVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYF 254 (512)
T ss_pred cCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeE
Confidence 346789999999999999999999999999999999999999999999999999999999999999765 2
Q ss_pred EEEecCcc------CChHHHHHHHHhc------CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhcccc
Q 009640 257 YDLELTKV------TDNSELRALLLQT------TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRI 324 (530)
Q Consensus 257 ~~l~l~~~------~~~~~L~~l~~~~------~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~ 324 (530)
+.+....+ .+...++.+|..+ ..||||||||||+++..++.
T Consensus 255 l~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~--------------------------- 307 (512)
T TIGR03689 255 LNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGS--------------------------- 307 (512)
T ss_pred EeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCC---------------------------
Confidence 33332222 1234567777654 36999999999998631110
Q ss_pred ccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHH
Q 009640 325 ASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAK 404 (530)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~ 404 (530)
...+...+.++++||+.|||+.+ .++++||+|||+++.|||||+||||||++|+|++|+.++|++|++
T Consensus 308 ----------~~s~d~e~~il~~LL~~LDgl~~--~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~ 375 (512)
T TIGR03689 308 ----------GVSSDVETTVVPQLLSELDGVES--LDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFS 375 (512)
T ss_pred ----------CccchHHHHHHHHHHHHhccccc--CCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHH
Confidence 01122345678999999999986 367999999999999999999999999999999999999999999
Q ss_pred HhhCCcCcc-------------chHHHHHHHHH-------------------------hCCCCCHHHHHHHHHHhccCHH
Q 009640 405 NYLGIESHH-------------ALFDVVESCIR-------------------------AGGALTPAQIGEVLLRNRGNVD 446 (530)
Q Consensus 405 ~~l~~~~~~-------------~~~~~i~~l~~-------------------------~~~~~spadi~~~l~~~~~d~~ 446 (530)
.|+...... .....+.+.+. .++.+|+|+|++++.++. .
T Consensus 376 ~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~---~ 452 (512)
T TIGR03689 376 KYLTDSLPLDADLAEFDGDREATAAALIQRAVDHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAK---K 452 (512)
T ss_pred HHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHHHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHH---H
Confidence 998642110 00011111100 135688888888887766 5
Q ss_pred HHHHHHHHHHHHhhhccccccccccccccCCCCcccccCCCCcccCCCCCCC
Q 009640 447 LAMKEVVSAMQAKILSGREVMECDELVITRSPESVVVVRSPENWDSSPGGKY 498 (530)
Q Consensus 447 ~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~ 498 (530)
.|+++.+... ...++..+...+..-. ....++.--...|++|..+-|..|
T Consensus 453 ~ai~~~~~~~-~~~~~~~~l~~a~~~e-~~~~~~~~~~~~~~~w~~~~~~~~ 502 (512)
T TIGR03689 453 RAIKDHITGG-QVGLRIEHLLAAVLDE-FRESEDLPNTTNPDDWARISGKKG 502 (512)
T ss_pred HHHHHHHhcC-CcCcCHHHHHHHHHHh-hcccccCCCCCCHHHHhhhhCCCC
Confidence 5555544221 1233333333332211 122334455677889999866653
No 17
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-33 Score=303.79 Aligned_cols=233 Identities=24% Similarity=0.334 Sum_probs=194.4
Q ss_pred CCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCcc---
Q 009640 188 RHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKV--- 264 (530)
Q Consensus 188 ~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~--- 264 (530)
....+|.+++|.++.|+++.+ +..|+++|..|..+|...|+|+||+||||||||+||+|+|.+.+.+++.++.+++
T Consensus 144 ~~~v~F~DVAG~dEakeel~E-iVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSE-LVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHH-HHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh
Confidence 456799999999999999999 7789999999999999999999999999999999999999999999999998886
Q ss_pred ---CChHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCc
Q 009640 265 ---TDNSELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEE 339 (530)
Q Consensus 265 ---~~~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (530)
.+.+.+|.+|.++ ++||||||||||++-..++ . +-..++.
T Consensus 223 fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg---~--------------------------------g~Gggnd 267 (596)
T COG0465 223 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRG---A--------------------------------GLGGGND 267 (596)
T ss_pred hcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccC---C--------------------------------CCCCCch
Confidence 3678999999998 5799999999999731110 0 0013455
Q ss_pred chhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCccchHHHH
Q 009640 340 SGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHHALFDVV 419 (530)
Q Consensus 340 ~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~i 419 (530)
....|+++||.+|||... ++++|||++||+|+-|||||+||||||++|.++.||...|.+|++.+....... ....+
T Consensus 268 erEQTLNQlLvEmDGF~~--~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~-~~Vdl 344 (596)
T COG0465 268 EREQTLNQLLVEMDGFGG--NEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLA-EDVDL 344 (596)
T ss_pred HHHHHHHHHHhhhccCCC--CCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCC-CcCCH
Confidence 667899999999999985 588999999999999999999999999999999999999999999888765544 22224
Q ss_pred HHHHHhCCCCCHHHHHHHHHHhc-------------cCHHHHHHHHHHHHHHh
Q 009640 420 ESCIRAGGALTPAQIGEVLLRNR-------------GNVDLAMKEVVSAMQAK 459 (530)
Q Consensus 420 ~~l~~~~~~~spadi~~~l~~~~-------------~d~~~al~~l~~~l~~~ 459 (530)
..++..+.||++||+.+++..+. .+.+.|.+.++...+.+
T Consensus 345 ~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~i~ea~drv~~G~erk 397 (596)
T COG0465 345 KKIARGTPGFSGADLANLLNEAALLAARRNKKEITMRDIEEAIDRVIAGPERK 397 (596)
T ss_pred HHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEeccchHHHHHHHhcCcCcC
Confidence 55888899999999999984311 25666666666554433
No 18
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-33 Score=296.02 Aligned_cols=211 Identities=20% Similarity=0.247 Sum_probs=185.1
Q ss_pred CCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCcc------
Q 009640 191 STFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKV------ 264 (530)
Q Consensus 191 ~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~------ 264 (530)
..|++++|..++|+.+.+.+..+.+.|..|.+.+...+.|+|||||||||||.||.|+|..+++.|+.+...++
T Consensus 664 i~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIG 743 (952)
T KOG0735|consen 664 IRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIG 743 (952)
T ss_pred CCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999986655
Q ss_pred CChHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchh
Q 009640 265 TDNSELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGR 342 (530)
Q Consensus 265 ~~~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (530)
.++..+|.+|.++ .+|||+|+||+|++.+ +|.. ...+...
T Consensus 744 aSEq~vR~lF~rA~~a~PCiLFFDEfdSiAP------------------kRGh--------------------DsTGVTD 785 (952)
T KOG0735|consen 744 ASEQNVRDLFERAQSAKPCILFFDEFDSIAP------------------KRGH--------------------DSTGVTD 785 (952)
T ss_pred ccHHHHHHHHHHhhccCCeEEEeccccccCc------------------ccCC--------------------CCCCchH
Confidence 3678899999987 6899999999999842 2221 1234567
Q ss_pred hhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCccchHHHHHHH
Q 009640 343 VTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHHALFDVVESC 422 (530)
Q Consensus 343 ~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~i~~l 422 (530)
+++++||.+|||... -.++.|+++|.+|+.|||||+||||+|++++.+.|+..+|.+|++..-.....+ ...+++-+
T Consensus 786 RVVNQlLTelDG~Eg--l~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~-~~vdl~~~ 862 (952)
T KOG0735|consen 786 RVVNQLLTELDGAEG--LDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKD-TDVDLECL 862 (952)
T ss_pred HHHHHHHHhhccccc--cceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCc-cccchHHH
Confidence 789999999999987 478999999999999999999999999999999999999999999876644443 33457788
Q ss_pred HHhCCCCCHHHHHHHHHHhc
Q 009640 423 IRAGGALTPAQIGEVLLRNR 442 (530)
Q Consensus 423 ~~~~~~~spadi~~~l~~~~ 442 (530)
+..|+|||+||++.+|..+.
T Consensus 863 a~~T~g~tgADlq~ll~~A~ 882 (952)
T KOG0735|consen 863 AQKTDGFTGADLQSLLYNAQ 882 (952)
T ss_pred hhhcCCCchhhHHHHHHHHH
Confidence 88899999999999997554
No 19
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=1.1e-32 Score=290.95 Aligned_cols=220 Identities=23% Similarity=0.245 Sum_probs=181.7
Q ss_pred cCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCcc
Q 009640 185 VPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKV 264 (530)
Q Consensus 185 ~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~ 264 (530)
+...+..+|++|+|.++++++|.+.+..++.+++.|..+|+.+++|+|||||||||||++|+|+|++++.+++.+..+.+
T Consensus 122 ~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l 201 (389)
T PRK03992 122 VIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSEL 201 (389)
T ss_pred ecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHH
Confidence 44456778999999999999999999999999999999999999999999999999999999999999999999987765
Q ss_pred C------ChHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCC
Q 009640 265 T------DNSELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNN 336 (530)
Q Consensus 265 ~------~~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 336 (530)
. +...++.+|..+ .+||||||||||.++..+.+ ....
T Consensus 202 ~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~-----------------------------------~~~~ 246 (389)
T PRK03992 202 VQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTD-----------------------------------SGTS 246 (389)
T ss_pred hHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhccccc-----------------------------------CCCC
Confidence 2 234567777765 57999999999998521100 0001
Q ss_pred CCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCccchH
Q 009640 337 GEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHHALF 416 (530)
Q Consensus 337 ~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~ 416 (530)
.+.....++..||+.+||+.. ..+++||+|||+++.||+||+||||||..|+|++|+.++|..|++.++...... ..
T Consensus 247 ~~~~~~~~l~~lL~~ld~~~~--~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~-~~ 323 (389)
T PRK03992 247 GDREVQRTLMQLLAEMDGFDP--RGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLA-DD 323 (389)
T ss_pred ccHHHHHHHHHHHHhccccCC--CCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCC-Cc
Confidence 122345678899999999875 467899999999999999999999999999999999999999999998754433 11
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHhc
Q 009640 417 DVVESCIRAGGALTPAQIGEVLLRNR 442 (530)
Q Consensus 417 ~~i~~l~~~~~~~spadi~~~l~~~~ 442 (530)
..+..++..+.+|+++||..+|..+.
T Consensus 324 ~~~~~la~~t~g~sgadl~~l~~eA~ 349 (389)
T PRK03992 324 VDLEELAELTEGASGADLKAICTEAG 349 (389)
T ss_pred CCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 23677888899999999999997554
No 20
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=6.2e-33 Score=298.01 Aligned_cols=252 Identities=18% Similarity=0.211 Sum_probs=197.0
Q ss_pred CCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccC---
Q 009640 189 HPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVT--- 265 (530)
Q Consensus 189 ~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~--- 265 (530)
+..+|++|+|.+.+|+.+.+....|.. .+.+.|.+.++|+|||||||||||++|+|+|++++.+++.++.+.+.
T Consensus 223 ~~~~~~dvgGl~~lK~~l~~~~~~~~~---~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 223 VNEKISDIGGLDNLKDWLKKRSTSFSK---QASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHhhH---HHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence 456899999999999988876655532 34567999999999999999999999999999999999999876542
Q ss_pred ---ChHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcc
Q 009640 266 ---DNSELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEES 340 (530)
Q Consensus 266 ---~~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (530)
++..++++|..+ .+||||||||||.++.-.. ..++...
T Consensus 300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~-------------------------------------~~~d~~~ 342 (489)
T CHL00195 300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSE-------------------------------------SKGDSGT 342 (489)
T ss_pred cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhcccc-------------------------------------CCCCchH
Confidence 456788888754 7899999999999852000 0012334
Q ss_pred hhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCccc-hHHHH
Q 009640 341 GRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHHA-LFDVV 419 (530)
Q Consensus 341 ~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~-~~~~i 419 (530)
....++.||+.|+.. ...++||+|||+++.|||||+||||||..|+++.|+.++|..||+.|+....... ....+
T Consensus 343 ~~rvl~~lL~~l~~~----~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl 418 (489)
T CHL00195 343 TNRVLATFITWLSEK----KSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDI 418 (489)
T ss_pred HHHHHHHHHHHHhcC----CCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCH
Confidence 567888999988853 4578999999999999999999999999999999999999999999997643221 12347
Q ss_pred HHHHHhCCCCCHHHHHHHHHHhccCHHHHHHHHHHHHHHhhhccccccccccccccCCCCcccccCCCCcccCC
Q 009640 420 ESCIRAGGALTPAQIGEVLLRNRGNVDLAMKEVVSAMQAKILSGREVMECDELVITRSPESVVVVRSPENWDSS 493 (530)
Q Consensus 420 ~~l~~~~~~~spadi~~~l~~~~~d~~~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 493 (530)
+.++..+.|||+|||.+++..+. ..| ..+.+.++..++..+...+.|.+....+.+....+|...
T Consensus 419 ~~La~~T~GfSGAdI~~lv~eA~---~~A------~~~~~~lt~~dl~~a~~~~~Pls~~~~e~i~~~~~Wa~~ 483 (489)
T CHL00195 419 KKLSKLSNKFSGAEIEQSIIEAM---YIA------FYEKREFTTDDILLALKQFIPLAQTEKEQIEALQNWASS 483 (489)
T ss_pred HHHHhhcCCCCHHHHHHHHHHHH---HHH------HHcCCCcCHHHHHHHHHhcCCCcccCHHHHHHHHHHHHc
Confidence 88888899999999999986543 111 123456777777888777777665555667777788765
No 21
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.4e-33 Score=265.52 Aligned_cols=219 Identities=23% Similarity=0.265 Sum_probs=181.0
Q ss_pred ccCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCc
Q 009640 184 SVPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTK 263 (530)
Q Consensus 184 ~~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~ 263 (530)
.+...+..|+.+++|..++.+.|++.++.++.+|+.|.++|+.+++|+|||||||||||.+|+|+||..+.-|+.+-.++
T Consensus 167 ~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigse 246 (435)
T KOG0729|consen 167 QVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSE 246 (435)
T ss_pred EeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHH
Confidence 45667888999999999999999999999999999999999999999999999999999999999999999999987776
Q ss_pred cC------ChHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCC
Q 009640 264 VT------DNSELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNN 335 (530)
Q Consensus 264 ~~------~~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 335 (530)
+. +..-++.+|.-+ .+-||||+||||++-+.+=+ ...
T Consensus 247 lvqkyvgegarmvrelf~martkkaciiffdeidaiggarfd-----------------------------------dg~ 291 (435)
T KOG0729|consen 247 LVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFD-----------------------------------DGA 291 (435)
T ss_pred HHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCcccc-----------------------------------CCC
Confidence 52 234467777655 56799999999998321110 011
Q ss_pred CCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCcc--
Q 009640 336 NGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHH-- 413 (530)
Q Consensus 336 ~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~-- 413 (530)
+++...++++-.|+|++||+.. .+++-|+|+||+|+.|||||+||||+|++++|.+||.+.|..|++.+......+
T Consensus 292 ggdnevqrtmleli~qldgfdp--rgnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverd 369 (435)
T KOG0729|consen 292 GGDNEVQRTMLELINQLDGFDP--RGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERD 369 (435)
T ss_pred CCcHHHHHHHHHHHHhccCCCC--CCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccc
Confidence 3445567889999999999987 578889999999999999999999999999999999999999998776543322
Q ss_pred chHHHHHHHHHhCCCCCHHHHHHHHHHhc
Q 009640 414 ALFDVVESCIRAGGALTPAQIGEVLLRNR 442 (530)
Q Consensus 414 ~~~~~i~~l~~~~~~~spadi~~~l~~~~ 442 (530)
-.++.+.. ....-|+|+|..+|..+.
T Consensus 370 ir~ellar---lcpnstgaeirsvcteag 395 (435)
T KOG0729|consen 370 IRFELLAR---LCPNSTGAEIRSVCTEAG 395 (435)
T ss_pred hhHHHHHh---hCCCCcchHHHHHHHHhh
Confidence 13444444 467899999999997543
No 22
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=2.4e-32 Score=310.08 Aligned_cols=215 Identities=20% Similarity=0.249 Sum_probs=183.3
Q ss_pred CCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCcc---
Q 009640 188 RHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKV--- 264 (530)
Q Consensus 188 ~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~--- 264 (530)
.+..+|++++|.+.+|+.|.+.+..++.+++.|.++|..+++|+|||||||||||++|+|+|++++.+++.++.+++
T Consensus 447 ~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~ 526 (733)
T TIGR01243 447 VPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSK 526 (733)
T ss_pred ccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhc
Confidence 34668999999999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred ---CChHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCc
Q 009640 265 ---TDNSELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEE 339 (530)
Q Consensus 265 ---~~~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (530)
.++..++.+|..+ ..||||||||||.+++.++. .....
T Consensus 527 ~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~-------------------------------------~~~~~ 569 (733)
T TIGR01243 527 WVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGA-------------------------------------RFDTS 569 (733)
T ss_pred ccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCC-------------------------------------CCCcc
Confidence 2456789999876 68999999999998631110 01123
Q ss_pred chhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCccchHHHH
Q 009640 340 SGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHHALFDVV 419 (530)
Q Consensus 340 ~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~i 419 (530)
.....+++||+.|||+.. ..+++||+|||+|+.||||++||||||++|++++|+.++|.+||+.++...... ....+
T Consensus 570 ~~~~~~~~lL~~ldg~~~--~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~-~~~~l 646 (733)
T TIGR01243 570 VTDRIVNQLLTEMDGIQE--LSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLA-EDVDL 646 (733)
T ss_pred HHHHHHHHHHHHhhcccC--CCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCC-ccCCH
Confidence 356788999999999976 467999999999999999999999999999999999999999999988755443 22237
Q ss_pred HHHHHhCCCCCHHHHHHHHHHhc
Q 009640 420 ESCIRAGGALTPAQIGEVLLRNR 442 (530)
Q Consensus 420 ~~l~~~~~~~spadi~~~l~~~~ 442 (530)
+.++..+.|||+|||..+|..+.
T Consensus 647 ~~la~~t~g~sgadi~~~~~~A~ 669 (733)
T TIGR01243 647 EELAEMTEGYTGADIEAVCREAA 669 (733)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHH
Confidence 78888899999999999986544
No 23
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=2.3e-32 Score=289.65 Aligned_cols=220 Identities=25% Similarity=0.299 Sum_probs=180.9
Q ss_pred cCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCcc
Q 009640 185 VPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKV 264 (530)
Q Consensus 185 ~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~ 264 (530)
+...++.+|++|+|.++++++|.+.+..++.++++|..+|+.+++|+|||||||||||++|+|||++++.+++.+..+.+
T Consensus 174 ~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL 253 (438)
T PTZ00361 174 VDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSEL 253 (438)
T ss_pred cccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchh
Confidence 44567789999999999999999999999999999999999999999999999999999999999999999999887665
Q ss_pred C------ChHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCC
Q 009640 265 T------DNSELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNN 336 (530)
Q Consensus 265 ~------~~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 336 (530)
. +...++.+|..+ ..||||||||||+++..+.+ . ..+
T Consensus 254 ~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~------------------~-----------------~sg 298 (438)
T PTZ00361 254 IQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYD------------------A-----------------TSG 298 (438)
T ss_pred hhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCC------------------C-----------------CCc
Confidence 2 233467777654 68999999999998521100 0 001
Q ss_pred CCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCccchH
Q 009640 337 GEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHHALF 416 (530)
Q Consensus 337 ~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~ 416 (530)
.......++..||+.+||+.. ..++.||+|||+++.|||||+||||||.+|+|++|+.++|..|++.++...... ..
T Consensus 299 g~~e~qr~ll~LL~~Ldg~~~--~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~-~d 375 (438)
T PTZ00361 299 GEKEIQRTMLELLNQLDGFDS--RGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLA-ED 375 (438)
T ss_pred ccHHHHHHHHHHHHHHhhhcc--cCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCC-cC
Confidence 222345677899999999875 467899999999999999999999999999999999999999999998754433 11
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHhc
Q 009640 417 DVVESCIRAGGALTPAQIGEVLLRNR 442 (530)
Q Consensus 417 ~~i~~l~~~~~~~spadi~~~l~~~~ 442 (530)
..++.++..+.+||+|||..+|..+.
T Consensus 376 vdl~~la~~t~g~sgAdI~~i~~eA~ 401 (438)
T PTZ00361 376 VDLEEFIMAKDELSGADIKAICTEAG 401 (438)
T ss_pred cCHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 23677777889999999999987543
No 24
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.98 E-value=6.5e-32 Score=293.90 Aligned_cols=216 Identities=24% Similarity=0.320 Sum_probs=180.1
Q ss_pred CCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccC-
Q 009640 187 FRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVT- 265 (530)
Q Consensus 187 ~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~- 265 (530)
..+..+|++++|.+++|+++.+ +..++.+++.|.+.|...++|+|||||||||||++++++|++++.+++.++.+.+.
T Consensus 48 ~~~~~~~~di~g~~~~k~~l~~-~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~ 126 (495)
T TIGR01241 48 EKPKVTFKDVAGIDEAKEELME-IVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE 126 (495)
T ss_pred CCCCCCHHHhCCHHHHHHHHHH-HHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHH
Confidence 3567899999999999999997 45578999999999999999999999999999999999999999999999876542
Q ss_pred -----ChHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCC
Q 009640 266 -----DNSELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGE 338 (530)
Q Consensus 266 -----~~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (530)
+...++.+|..+ .+||||||||||++...++.. ....+
T Consensus 127 ~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~-----------------------------------~~~~~ 171 (495)
T TIGR01241 127 MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAG-----------------------------------LGGGN 171 (495)
T ss_pred HHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccC-----------------------------------cCCcc
Confidence 456788898876 689999999999985211100 00112
Q ss_pred cchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCccchHHH
Q 009640 339 ESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHHALFDV 418 (530)
Q Consensus 339 ~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~ 418 (530)
.....+++.||+.|||+.+ .++++||+|||+++.|||||+||||||++|+++.|+.++|.+|++.++...... ....
T Consensus 172 ~~~~~~~~~lL~~~d~~~~--~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~~~~ 248 (495)
T TIGR01241 172 DEREQTLNQLLVEMDGFGT--NTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-PDVD 248 (495)
T ss_pred HHHHHHHHHHHhhhccccC--CCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-cchh
Confidence 3345788999999999976 467999999999999999999999999999999999999999999999765443 2234
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHh
Q 009640 419 VESCIRAGGALTPAQIGEVLLRN 441 (530)
Q Consensus 419 i~~l~~~~~~~spadi~~~l~~~ 441 (530)
+..++..+.+||++||..++..+
T Consensus 249 l~~la~~t~G~sgadl~~l~~eA 271 (495)
T TIGR01241 249 LKAVARRTPGFSGADLANLLNEA 271 (495)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHH
Confidence 67888889999999999998643
No 25
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.98 E-value=9.3e-32 Score=258.05 Aligned_cols=207 Identities=17% Similarity=0.237 Sum_probs=173.6
Q ss_pred CCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccCC--
Q 009640 189 HPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVTD-- 266 (530)
Q Consensus 189 ~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~~-- 266 (530)
+..+|++++|+++.|+.- ..|..|+.+|+.|..+ .|+.+|||||||||||+||+|+||+++.+++.+..+++.+
T Consensus 116 ~~it~ddViGqEeAK~kc-rli~~yLenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGeh 191 (368)
T COG1223 116 SDITLDDVIGQEEAKRKC-RLIMEYLENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEH 191 (368)
T ss_pred ccccHhhhhchHHHHHHH-HHHHHHhhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHH
Confidence 456899999999998865 4577899999988765 3789999999999999999999999999999999887732
Q ss_pred ----hHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcc
Q 009640 267 ----NSELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEES 340 (530)
Q Consensus 267 ----~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (530)
...+++++..+ .+|||+||||+|++. -.+|.. .-.+.
T Consensus 192 VGdgar~Ihely~rA~~~aPcivFiDE~DAia--LdRryQ-----------------------------------elRGD 234 (368)
T COG1223 192 VGDGARRIHELYERARKAAPCIVFIDELDAIA--LDRRYQ-----------------------------------ELRGD 234 (368)
T ss_pred hhhHHHHHHHHHHHHHhcCCeEEEehhhhhhh--hhhhHH-----------------------------------Hhccc
Confidence 34688888877 689999999999982 111111 11233
Q ss_pred hhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCccchHHHHH
Q 009640 341 GRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHHALFDVVE 420 (530)
Q Consensus 341 ~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~i~ 420 (530)
-..+++.||..|||+.. +++++.|++||+|+.||||+++ ||...|+|.+|+.++|..|++.|......+ ....++
T Consensus 235 VsEiVNALLTelDgi~e--neGVvtIaaTN~p~~LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plp-v~~~~~ 309 (368)
T COG1223 235 VSEIVNALLTELDGIKE--NEGVVTIAATNRPELLDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLP-VDADLR 309 (368)
T ss_pred HHHHHHHHHHhccCccc--CCceEEEeecCChhhcCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCc-cccCHH
Confidence 45688999999999997 6899999999999999999999 999999999999999999999999877666 333477
Q ss_pred HHHHhCCCCCHHHHHHHHHHh
Q 009640 421 SCIRAGGALTPAQIGEVLLRN 441 (530)
Q Consensus 421 ~l~~~~~~~spadi~~~l~~~ 441 (530)
.++..+.|||+.||.+-+++.
T Consensus 310 ~~~~~t~g~SgRdikekvlK~ 330 (368)
T COG1223 310 YLAAKTKGMSGRDIKEKVLKT 330 (368)
T ss_pred HHHHHhCCCCchhHHHHHHHH
Confidence 888889999999999887753
No 26
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=1.9e-31 Score=290.60 Aligned_cols=216 Identities=24% Similarity=0.295 Sum_probs=185.6
Q ss_pred CCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccC-
Q 009640 187 FRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVT- 265 (530)
Q Consensus 187 ~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~- 265 (530)
..+..+|++++|.+.+|+.+.+.+..++..++.|.+.|...++|+|||||||||||+||+|+|++++.+|+.+..+++.
T Consensus 235 ~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~s 314 (494)
T COG0464 235 EDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLS 314 (494)
T ss_pred CCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhc
Confidence 4566789999999999999999999999999999999999999999999999999999999999999999999877653
Q ss_pred -----ChHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCC
Q 009640 266 -----DNSELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGE 338 (530)
Q Consensus 266 -----~~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (530)
++..++++|..+ .+||||||||||+++..++. ..+
T Consensus 315 k~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~--------------------------------------~~~ 356 (494)
T COG0464 315 KWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGP--------------------------------------SED 356 (494)
T ss_pred cccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCC--------------------------------------CCc
Confidence 467799999887 68999999999998531110 112
Q ss_pred cchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCcc-chHH
Q 009640 339 ESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHH-ALFD 417 (530)
Q Consensus 339 ~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~-~~~~ 417 (530)
......+++||.+|||+.. ..+++||+|||+|+.||||++||||||..|+++.||.++|..|++.++...... ....
T Consensus 357 ~~~~r~~~~lL~~~d~~e~--~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~ 434 (494)
T COG0464 357 GSGRRVVGQLLTELDGIEK--AEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDV 434 (494)
T ss_pred hHHHHHHHHHHHHhcCCCc--cCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhh
Confidence 2236789999999999987 577999999999999999999999999999999999999999999999855443 1223
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHhc
Q 009640 418 VVESCIRAGGALTPAQIGEVLLRNR 442 (530)
Q Consensus 418 ~i~~l~~~~~~~spadi~~~l~~~~ 442 (530)
.++.++..+.+||++||..+|..+.
T Consensus 435 ~~~~l~~~t~~~sgadi~~i~~ea~ 459 (494)
T COG0464 435 DLEELAEITEGYSGADIAALVREAA 459 (494)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 4667777789999999999997554
No 27
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.1e-32 Score=273.91 Aligned_cols=213 Identities=21% Similarity=0.279 Sum_probs=181.5
Q ss_pred CCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhc-CCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccCC-
Q 009640 189 HPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVG-RAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVTD- 266 (530)
Q Consensus 189 ~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g-~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~~- 266 (530)
-..+|++|+|.+++++++.+.+..++.+|++|..-+ ..+++|+|||||||||||++|+|+|++.+.+++.+..+.+.+
T Consensus 87 I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~K 166 (386)
T KOG0737|consen 87 IGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSK 166 (386)
T ss_pred ceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchh
Confidence 456899999999999999999999999999997433 235789999999999999999999999999999999998753
Q ss_pred -----hHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCc
Q 009640 267 -----NSELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEE 339 (530)
Q Consensus 267 -----~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (530)
+.-++.+|.-+ -+||||||||||.++..++ ..+++
T Consensus 167 WfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~--------------------------------------s~dHE 208 (386)
T KOG0737|consen 167 WFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRR--------------------------------------STDHE 208 (386)
T ss_pred hHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcc--------------------------------------cchHH
Confidence 23355556555 4799999999999863221 13566
Q ss_pred chhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCccchHHHH
Q 009640 340 SGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHHALFDVV 419 (530)
Q Consensus 340 ~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~i 419 (530)
.....-++|...+||+.+..+..++|+++||+|.+||.|++| ||...++++.|+..+|..|++.+|..+..+..++ +
T Consensus 209 a~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD-~ 285 (386)
T KOG0737|consen 209 ATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVD-L 285 (386)
T ss_pred HHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccC-H
Confidence 677888999999999999766678888999999999999999 9999999999999999999999999876653444 7
Q ss_pred HHHHHhCCCCCHHHHHHHHHHhc
Q 009640 420 ESCIRAGGALTPAQIGEVLLRNR 442 (530)
Q Consensus 420 ~~l~~~~~~~spadi~~~l~~~~ 442 (530)
.+++..+.|||+.||.++|..+.
T Consensus 286 ~~iA~~t~GySGSDLkelC~~Aa 308 (386)
T KOG0737|consen 286 DEIAQMTEGYSGSDLKELCRLAA 308 (386)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHh
Confidence 77888899999999999998655
No 28
>CHL00176 ftsH cell division protein; Validated
Probab=99.97 E-value=1.5e-30 Score=287.77 Aligned_cols=215 Identities=23% Similarity=0.309 Sum_probs=179.6
Q ss_pred CCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccC-
Q 009640 187 FRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVT- 265 (530)
Q Consensus 187 ~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~- 265 (530)
.....+|++++|.+++++++.+ +..+++.++.|..+|...++|+|||||||||||++|+|+|++++.+++.++.+.+.
T Consensus 176 ~~~~~~f~dv~G~~~~k~~l~e-iv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~ 254 (638)
T CHL00176 176 ADTGITFRDIAGIEEAKEEFEE-VVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVE 254 (638)
T ss_pred cCCCCCHHhccChHHHHHHHHH-HHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHH
Confidence 3456799999999999998876 56778999999999999999999999999999999999999999999999877652
Q ss_pred -----ChHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCC
Q 009640 266 -----DNSELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGE 338 (530)
Q Consensus 266 -----~~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (530)
....++.+|..+ ..||||||||||++...++.. ....+
T Consensus 255 ~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~-----------------------------------~~~~~ 299 (638)
T CHL00176 255 MFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAG-----------------------------------IGGGN 299 (638)
T ss_pred HhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCC-----------------------------------CCCCc
Confidence 345678888876 589999999999984211100 00123
Q ss_pred cchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCccchHHH
Q 009640 339 ESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHHALFDV 418 (530)
Q Consensus 339 ~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~ 418 (530)
.....+++.||+.+||+.. ..+++||+|||+++.|||||+||||||.+|+++.|+.++|..|++.++...... ....
T Consensus 300 ~e~~~~L~~LL~~~dg~~~--~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~-~d~~ 376 (638)
T CHL00176 300 DEREQTLNQLLTEMDGFKG--NKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLS-PDVS 376 (638)
T ss_pred HHHHHHHHHHHhhhccccC--CCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccc-hhHH
Confidence 3456789999999999876 467999999999999999999999999999999999999999999999764433 3345
Q ss_pred HHHHHHhCCCCCHHHHHHHHHH
Q 009640 419 VESCIRAGGALTPAQIGEVLLR 440 (530)
Q Consensus 419 i~~l~~~~~~~spadi~~~l~~ 440 (530)
+..++..+.||+++||.+++..
T Consensus 377 l~~lA~~t~G~sgaDL~~lvne 398 (638)
T CHL00176 377 LELIARRTPGFSGADLANLLNE 398 (638)
T ss_pred HHHHHhcCCCCCHHHHHHHHHH
Confidence 7788888999999999998864
No 29
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.8e-30 Score=273.38 Aligned_cols=252 Identities=23% Similarity=0.274 Sum_probs=213.4
Q ss_pred CCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCcc----
Q 009640 189 HPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKV---- 264 (530)
Q Consensus 189 ~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~---- 264 (530)
++.+ ++++|.......+.+.+..++..+..|...|.++++|+|+|||||||||.+++|+|++.+..++.++..++
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 5666 78899999999999999999999999999999999999999999999999999999999999999987765
Q ss_pred --CChHHHHHHHHhc--CC-CeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCc
Q 009640 265 --TDNSELRALLLQT--TN-RSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEE 339 (530)
Q Consensus 265 --~~~~~L~~l~~~~--~~-~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (530)
.+++.|++.|.++ .+ |+||||||||.+.+ +|.. .+.
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p------------------~r~~---------------------~~~ 299 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCP------------------KREG---------------------ADD 299 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCC------------------cccc---------------------cch
Confidence 4678899999987 45 99999999999852 1111 112
Q ss_pred chhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCccchHHHH
Q 009640 340 SGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHHALFDVV 419 (530)
Q Consensus 340 ~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~i 419 (530)
...++.++|+..+||+.+ ...+|||+|||+|+.|||++.| ||||..+++..|+..+|.+|++.+.....+. ....+
T Consensus 300 ~e~Rv~sqlltL~dg~~~--~~~vivl~atnrp~sld~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~-~~~~l 375 (693)
T KOG0730|consen 300 VESRVVSQLLTLLDGLKP--DAKVIVLAATNRPDSLDPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLL-SDVDL 375 (693)
T ss_pred HHHHHHHHHHHHHhhCcC--cCcEEEEEecCCccccChhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCc-chhhH
Confidence 467789999999999985 5789999999999999999999 9999999999999999999999999877666 45568
Q ss_pred HHHHHhCCCCCHHHHHHHHHHhccCHHHHHHHHHHHHHHhhhccccccccccccccCCCCcccccCCCCcccCCCCCC
Q 009640 420 ESCIRAGGALTPAQIGEVLLRNRGNVDLAMKEVVSAMQAKILSGREVMECDELVITRSPESVVVVRSPENWDSSPGGK 497 (530)
Q Consensus 420 ~~l~~~~~~~spadi~~~l~~~~~d~~~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~g~~ 497 (530)
+.++..++||++||+..+|..+. ..++++ +...+..+.....|++.+......+.+.|+++||..
T Consensus 376 ~~iA~~thGyvGaDL~~l~~ea~---~~~~r~----------~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE 440 (693)
T KOG0730|consen 376 EDIAVSTHGYVGADLAALCREAS---LQATRR----------TLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLE 440 (693)
T ss_pred HHHHHHccchhHHHHHHHHHHHH---HHHhhh----------hHHHHHHHHhcCCchhhhheeccCCCCChhhccCHH
Confidence 88888899999999999997554 233332 333444555566677888888888999999999875
No 30
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.96 E-value=2.4e-29 Score=263.75 Aligned_cols=220 Identities=22% Similarity=0.249 Sum_probs=177.2
Q ss_pred cCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCcc
Q 009640 185 VPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKV 264 (530)
Q Consensus 185 ~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~ 264 (530)
+...+..+|++++|.++++++|.+.+..++.+++.|..+|+.+++|+|||||||||||++++++|++++.+++.+....+
T Consensus 113 ~~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l 192 (364)
T TIGR01242 113 VEERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSEL 192 (364)
T ss_pred eccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHH
Confidence 34456778999999999999999999999999999999999999999999999999999999999999999988875543
Q ss_pred C------ChHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCC
Q 009640 265 T------DNSELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNN 336 (530)
Q Consensus 265 ~------~~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 336 (530)
. ....++.+|..+ ..|+||||||||.+...+. . ...+
T Consensus 193 ~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~---~--------------------------------~~~~ 237 (364)
T TIGR01242 193 VRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRT---D--------------------------------SGTS 237 (364)
T ss_pred HHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccc---c--------------------------------CCCC
Confidence 2 123356666544 5799999999999842100 0 0001
Q ss_pred CCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCccchH
Q 009640 337 GEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHHALF 416 (530)
Q Consensus 337 ~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~ 416 (530)
.+.....++..+++.+|++.. .++++||+|||+++.+|++++||||||..|+|+.|+.++|..|++.++........
T Consensus 238 ~~~~~~~~l~~ll~~ld~~~~--~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~- 314 (364)
T TIGR01242 238 GDREVQRTLMQLLAELDGFDP--RGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAED- 314 (364)
T ss_pred ccHHHHHHHHHHHHHhhCCCC--CCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCcc-
Confidence 223345678899999998865 36789999999999999999999999999999999999999999998865433211
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHhc
Q 009640 417 DVVESCIRAGGALTPAQIGEVLLRNR 442 (530)
Q Consensus 417 ~~i~~l~~~~~~~spadi~~~l~~~~ 442 (530)
..+..++..+.+|+++||..+|..+.
T Consensus 315 ~~~~~la~~t~g~sg~dl~~l~~~A~ 340 (364)
T TIGR01242 315 VDLEAIAKMTEGASGADLKAICTEAG 340 (364)
T ss_pred CCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 13677777789999999999987544
No 31
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.96 E-value=1.6e-29 Score=293.16 Aligned_cols=200 Identities=17% Similarity=0.124 Sum_probs=153.6
Q ss_pred cChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccCC----------------------------
Q 009640 215 NGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVTD---------------------------- 266 (530)
Q Consensus 215 ~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~~---------------------------- 266 (530)
.++..+.++|..+++|+||+||||||||+||+|+|++++++++.++++++..
T Consensus 1617 ~~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~ 1696 (2281)
T CHL00206 1617 HGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRD 1696 (2281)
T ss_pred cCcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccc
Confidence 3456778899999999999999999999999999999999999998766531
Q ss_pred ---------------------hHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccc
Q 009640 267 ---------------------NSELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSR 323 (530)
Q Consensus 267 ---------------------~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~ 323 (530)
...++.+|..| .+||||+|||||++..
T Consensus 1697 ~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~------------------------------ 1746 (2281)
T CHL00206 1697 LDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNV------------------------------ 1746 (2281)
T ss_pred cchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCC------------------------------
Confidence 01256677665 7899999999999831
Q ss_pred cccccCCCCCCCCCCcchhhhHHHHhhhccCCccC-CCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHH
Q 009640 324 IASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSC-CSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVL 402 (530)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~-~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i 402 (530)
.+....+++.||+.|||.... ...++|||+|||+|+.|||||+||||||++|+++.|+..+|+++
T Consensus 1747 --------------~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~ki 1812 (2281)
T CHL00206 1747 --------------NESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKH 1812 (2281)
T ss_pred --------------CccceehHHHHHHHhccccccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHH
Confidence 112335689999999987532 24679999999999999999999999999999999999999998
Q ss_pred HHHhhCCc--CccchHHHHHHHHHhCCCCCHHHHHHHHHHhc-------------cCHHHHHHHHHHHHHH
Q 009640 403 AKNYLGIE--SHHALFDVVESCIRAGGALTPAQIGEVLLRNR-------------GNVDLAMKEVVSAMQA 458 (530)
Q Consensus 403 ~~~~l~~~--~~~~~~~~i~~l~~~~~~~spadi~~~l~~~~-------------~d~~~al~~l~~~l~~ 458 (530)
+...+... ........+..+|..|.|||+|||+++|..+. .+.+.|+.+.+-.++.
T Consensus 1813 L~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAirq~ks~Id~~~I~~Al~Rq~~g~~~ 1883 (2281)
T CHL00206 1813 FFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRS 1883 (2281)
T ss_pred HHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHhhhhh
Confidence 87654221 11101123678888899999999999986422 2455666665544443
No 32
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.96 E-value=4.8e-29 Score=283.14 Aligned_cols=265 Identities=22% Similarity=0.286 Sum_probs=205.4
Q ss_pred CCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccC---
Q 009640 189 HPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVT--- 265 (530)
Q Consensus 189 ~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~--- 265 (530)
+..+|++|+|.+++++.|.+.+..++.+++.|..+|+.+++|+|||||||||||+|+++||++++.+++.++...+.
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~ 252 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKY 252 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhccc
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999866542
Q ss_pred ---ChHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcc
Q 009640 266 ---DNSELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEES 340 (530)
Q Consensus 266 ---~~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (530)
....++.+|..+ ..|+||||||||++...++ . .....
T Consensus 253 ~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~------------------~--------------------~~~~~ 294 (733)
T TIGR01243 253 YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKRE------------------E--------------------VTGEV 294 (733)
T ss_pred ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhccccc------------------C--------------------CcchH
Confidence 245688888765 6789999999999852110 0 11223
Q ss_pred hhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCccchHHHHH
Q 009640 341 GRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHHALFDVVE 420 (530)
Q Consensus 341 ~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~i~ 420 (530)
...+++.|++.||++.. ...++||+|||+++.|||+++|+||||.+|+++.|+.++|..|++.++...... ....+.
T Consensus 295 ~~~~~~~Ll~~ld~l~~--~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~-~d~~l~ 371 (733)
T TIGR01243 295 EKRVVAQLLTLMDGLKG--RGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLA-EDVDLD 371 (733)
T ss_pred HHHHHHHHHHHhhcccc--CCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCc-cccCHH
Confidence 35678899999999976 467889999999999999999999999999999999999999999887654332 122366
Q ss_pred HHHHhCCCCCHHHHHHHHHHhccCHHHHHHHHHHH--------------HHHhhhccccccccccccccCCCCcccccCC
Q 009640 421 SCIRAGGALTPAQIGEVLLRNRGNVDLAMKEVVSA--------------MQAKILSGREVMECDELVITRSPESVVVVRS 486 (530)
Q Consensus 421 ~l~~~~~~~spadi~~~l~~~~~d~~~al~~l~~~--------------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (530)
.++..+.+|+++|+..++..+. ..+++.+... ++....+..++..+...+.|+.........+
T Consensus 372 ~la~~t~G~~gadl~~l~~~a~---~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~ 448 (733)
T TIGR01243 372 KLAEVTHGFVGADLAALAKEAA---MAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPSAIREVLVEVP 448 (733)
T ss_pred HHHHhCCCCCHHHHHHHHHHHH---HHHHHHHhhccccccccccccchhcccccccHHHHHHHHhhccccccchhhcccc
Confidence 7777899999999999886543 4444443321 1112233444555555555655555555567
Q ss_pred CCcccCCCCCC
Q 009640 487 PENWDSSPGGK 497 (530)
Q Consensus 487 ~~~w~~~~g~~ 497 (530)
...|++++|..
T Consensus 449 ~~~~~di~g~~ 459 (733)
T TIGR01243 449 NVRWSDIGGLE 459 (733)
T ss_pred ccchhhcccHH
Confidence 88999998754
No 33
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.9e-30 Score=251.80 Aligned_cols=213 Identities=24% Similarity=0.322 Sum_probs=173.9
Q ss_pred CCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccCC--
Q 009640 189 HPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVTD-- 266 (530)
Q Consensus 189 ~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~~-- 266 (530)
...+|+.+.|.-++..++++-++.++.+++.|.++|+.+|.|+|||||||||||.+++++|..++.+++.+..+.+.+
T Consensus 127 ~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ky 206 (388)
T KOG0651|consen 127 RNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKY 206 (388)
T ss_pred cccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhh
Confidence 345899999999999999999999999999999999999999999999999999999999999999999999887743
Q ss_pred ----hHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcc
Q 009640 267 ----NSELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEES 340 (530)
Q Consensus 267 ----~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (530)
..-+++.|..+ ..|||||+||||++.+ ++.. .....+..
T Consensus 207 iGEsaRlIRemf~yA~~~~pciifmdeiDAigG---Rr~s--------------------------------e~Ts~dre 251 (388)
T KOG0651|consen 207 IGESARLIRDMFRYAREVIPCIIFMDEIDAIGG---RRFS--------------------------------EGTSSDRE 251 (388)
T ss_pred cccHHHHHHHHHHHHhhhCceEEeehhhhhhcc---EEec--------------------------------cccchhHH
Confidence 23367777766 5799999999999842 1100 00022345
Q ss_pred hhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCC-cCccchHHHH
Q 009640 341 GRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGI-ESHHALFDVV 419 (530)
Q Consensus 341 ~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~-~~~~~~~~~i 419 (530)
-+.||-.|||+|||... -+.+-+|+|||+|+.|||||+||||+|+.|+.|.|+...|..|++.+-.. ..|.++. .
T Consensus 252 iqrTLMeLlnqmdgfd~--l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid--~ 327 (388)
T KOG0651|consen 252 IQRTLMELLNQMDGFDT--LHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEID--D 327 (388)
T ss_pred HHHHHHHHHHhhccchh--cccccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeecccccccccccc--H
Confidence 67899999999999987 46788999999999999999999999999999999999999988766543 2233121 3
Q ss_pred HHHHHhCCCCCHHHHHHHHHH
Q 009640 420 ESCIRAGGALTPAQIGEVLLR 440 (530)
Q Consensus 420 ~~l~~~~~~~spadi~~~l~~ 440 (530)
+++.+-.+++.++|+.+.|..
T Consensus 328 eaivK~~d~f~gad~rn~~tE 348 (388)
T KOG0651|consen 328 EAILKLVDGFNGADLRNVCTE 348 (388)
T ss_pred HHHHHHHhccChHHHhhhccc
Confidence 444444689999998888764
No 34
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.5e-29 Score=262.78 Aligned_cols=266 Identities=19% Similarity=0.198 Sum_probs=213.0
Q ss_pred CCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccC---
Q 009640 189 HPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVT--- 265 (530)
Q Consensus 189 ~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~--- 265 (530)
++..|++++|...+|+.+.+.+..++.+++.|..+. ++.+|+||+||||||||+|++|||.+++..+++++.+++.
T Consensus 148 ~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~ 226 (428)
T KOG0740|consen 148 RNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKY 226 (428)
T ss_pred CcccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhc
Confidence 446779999999999999999999999999998874 4458999999999999999999999999999999988773
Q ss_pred ---ChHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcc
Q 009640 266 ---DNSELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEES 340 (530)
Q Consensus 266 ---~~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (530)
++.-++.+|.-+ .+|+||||||||.++..+ . .+.++.
T Consensus 227 ~Ge~eK~vralf~vAr~~qPsvifidEidslls~R------------------s--------------------~~e~e~ 268 (428)
T KOG0740|consen 227 VGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKR------------------S--------------------DNEHES 268 (428)
T ss_pred cChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhc------------------C--------------------Cccccc
Confidence 234466676544 789999999999997311 0 034566
Q ss_pred hhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCccchHHHHH
Q 009640 341 GRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHHALFDVVE 420 (530)
Q Consensus 341 ~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~i~ 420 (530)
++....++|..++|..+...+.++||+|||.|+.+|.|++| ||-+.+++|.|+.++|..+|++++....+......++
T Consensus 269 srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~ 346 (428)
T KOG0740|consen 269 SRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDIS 346 (428)
T ss_pred chhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHH
Confidence 77888999999999999877889999999999999999999 9999999999999999999999999886664557899
Q ss_pred HHHHhCCCCCHHHHHHHHHHhccCHHHHHHHH--H---HHHHHhhhccccccccccccccCCCCcccccCCCCcccCCCC
Q 009640 421 SCIRAGGALTPAQIGEVLLRNRGNVDLAMKEV--V---SAMQAKILSGREVMECDELVITRSPESVVVVRSPENWDSSPG 495 (530)
Q Consensus 421 ~l~~~~~~~spadi~~~l~~~~~d~~~al~~l--~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~g 495 (530)
.++..+.||++.||.++|..+..++...+..- + .+...+.....++..+...+.+.. +......+.+|+...|
T Consensus 347 ~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~~~~~~~~~~~~r~i~~~df~~a~~~i~~~~--s~~~l~~~~~~~~~fg 424 (428)
T KOG0740|consen 347 LLAKVTEGYSGSDITALCKEAAMGPLRELGGTTDLEFIDADKIRPITYPDFKNAFKNIKPSV--SLEGLEKYEKWDKEFG 424 (428)
T ss_pred HHHHHhcCcccccHHHHHHHhhcCchhhcccchhhhhcchhccCCCCcchHHHHHHhhcccc--CccccchhHHHhhhhc
Confidence 99999999999999999988776666655542 2 222234444555555555554433 3355666777777666
Q ss_pred CC
Q 009640 496 GK 497 (530)
Q Consensus 496 ~~ 497 (530)
..
T Consensus 425 ~~ 426 (428)
T KOG0740|consen 425 SS 426 (428)
T ss_pred cc
Confidence 53
No 35
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.96 E-value=1.7e-28 Score=273.84 Aligned_cols=216 Identities=23% Similarity=0.314 Sum_probs=176.5
Q ss_pred CCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccC--
Q 009640 188 RHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVT-- 265 (530)
Q Consensus 188 ~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~-- 265 (530)
....+|+++.+.+..++.+.+. ..++..+..|..+|...++|+||+||||||||++++++|++++.+++.++.+.+.
T Consensus 146 ~~~~~~~di~g~~~~~~~l~~i-~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~ 224 (644)
T PRK10733 146 QIKTTFADVAGCDEAKEEVAEL-VEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM 224 (644)
T ss_pred hhhCcHHHHcCHHHHHHHHHHH-HHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHh
Confidence 4456899999999999988774 4567778888889999999999999999999999999999999999999876542
Q ss_pred ----ChHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCc
Q 009640 266 ----DNSELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEE 339 (530)
Q Consensus 266 ----~~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (530)
+...++.+|..+ .+||||||||||++...++ . +..+.+.
T Consensus 225 ~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~---~--------------------------------~~~g~~~ 269 (644)
T PRK10733 225 FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRG---A--------------------------------GLGGGHD 269 (644)
T ss_pred hhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccC---C--------------------------------CCCCCch
Confidence 345678888776 5899999999999842110 0 0001233
Q ss_pred chhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCccchHHHH
Q 009640 340 SGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHHALFDVV 419 (530)
Q Consensus 340 ~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~i 419 (530)
....+++.||..|||+.+ ..+++||+|||+|+.|||||+||||||++|++++|+.++|.+|++.|+........ ..+
T Consensus 270 ~~~~~ln~lL~~mdg~~~--~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~-~d~ 346 (644)
T PRK10733 270 EREQTLNQMLVEMDGFEG--NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPD-IDA 346 (644)
T ss_pred HHHHHHHHHHHhhhcccC--CCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCc-CCH
Confidence 456789999999999976 46799999999999999999999999999999999999999999999976543312 235
Q ss_pred HHHHHhCCCCCHHHHHHHHHHhc
Q 009640 420 ESCIRAGGALTPAQIGEVLLRNR 442 (530)
Q Consensus 420 ~~l~~~~~~~spadi~~~l~~~~ 442 (530)
..++..+.|||+|||.++|..+.
T Consensus 347 ~~la~~t~G~sgadl~~l~~eAa 369 (644)
T PRK10733 347 AIIARGTPGFSGADLANLVNEAA 369 (644)
T ss_pred HHHHhhCCCCCHHHHHHHHHHHH
Confidence 66788899999999999997543
No 36
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.96 E-value=9.2e-28 Score=244.11 Aligned_cols=166 Identities=15% Similarity=0.121 Sum_probs=131.3
Q ss_pred hHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccC------ChHHHHHHHHhc-------CCCeEEEE
Q 009640 219 FYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVT------DNSELRALLLQT-------TNRSIIVI 285 (530)
Q Consensus 219 ~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~------~~~~L~~l~~~~-------~~~sII~I 285 (530)
+....|+.+|+|+|||||||||||++++|+|++++.+++.++..++. ++..++++|..+ .+||||||
T Consensus 139 ~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFI 218 (413)
T PLN00020 139 FLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFI 218 (413)
T ss_pred hhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEE
Confidence 33447889999999999999999999999999999999999987763 457799999866 26999999
Q ss_pred cCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCC--------c-
Q 009640 286 EDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGL--------W- 356 (530)
Q Consensus 286 DeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl--------~- 356 (530)
||||++++-++ ........+.+...|||.+|++ |
T Consensus 219 DEIDA~~g~r~-------------------------------------~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~ 261 (413)
T PLN00020 219 NDLDAGAGRFG-------------------------------------TTQYTVNNQMVNGTLMNIADNPTNVSLGGDWR 261 (413)
T ss_pred ehhhhcCCCCC-------------------------------------CCCcchHHHHHHHHHHHHhcCCcccccccccc
Confidence 99999853110 0011222455568999998864 4
Q ss_pred -cCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCccchHHHHHHHHHh
Q 009640 357 -SCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHHALFDVVESCIRA 425 (530)
Q Consensus 357 -s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~i~~l~~~ 425 (530)
.....+++||+|||+|+.|||||+||||||+.| ..|+.++|..|++.++...... ...+..++..
T Consensus 262 ~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~--~~dv~~Lv~~ 327 (413)
T PLN00020 262 EKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS--REDVVKLVDT 327 (413)
T ss_pred ccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC--HHHHHHHHHc
Confidence 112466899999999999999999999999975 5899999999999999876544 3567777764
No 37
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.8e-27 Score=266.73 Aligned_cols=214 Identities=23% Similarity=0.241 Sum_probs=180.2
Q ss_pred CCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcC-----CcEEEEec
Q 009640 187 FRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLC-----YDVYDLEL 261 (530)
Q Consensus 187 ~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~-----~~i~~l~l 261 (530)
......|++|+|.+.++.++.+-+..++..|++|.++++.++||+|||||||||||++++|+|..+. ..+|.-..
T Consensus 258 ~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkg 337 (1080)
T KOG0732|consen 258 VDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKG 337 (1080)
T ss_pred hhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcC
Confidence 3456689999999999999999999999999999999999999999999999999999999999882 23332222
Q ss_pred ----Ccc--CChHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCC
Q 009640 262 ----TKV--TDNSELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNN 333 (530)
Q Consensus 262 ----~~~--~~~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 333 (530)
+.. ..+.+|+-+|.++ ..|||||+||||-+.+ .|++.
T Consensus 338 aD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlap------------------vrSsk----------------- 382 (1080)
T KOG0732|consen 338 ADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAP------------------VRSSK----------------- 382 (1080)
T ss_pred chhhccccCcHHHHHHHHHHHHhccCceEEeccccccccc------------------cccch-----------------
Confidence 222 2356788899887 6899999999998742 22211
Q ss_pred CCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCcc
Q 009640 334 NNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHH 413 (530)
Q Consensus 334 ~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~ 413 (530)
.......+++.||..|||+.+ .+.++||++||+|+.+||||+||||||+.++|++|+.++|..|+..+-..-.+.
T Consensus 383 ---qEqih~SIvSTLLaLmdGlds--RgqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~ 457 (1080)
T KOG0732|consen 383 ---QEQIHASIVSTLLALMDGLDS--RGQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPP 457 (1080)
T ss_pred ---HHHhhhhHHHHHHHhccCCCC--CCceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCC
Confidence 123345678999999999998 588999999999999999999999999999999999999999999888776666
Q ss_pred chHHHHHHHHHhCCCCCHHHHHHHHHH
Q 009640 414 ALFDVVESCIRAGGALTPAQIGEVLLR 440 (530)
Q Consensus 414 ~~~~~i~~l~~~~~~~spadi~~~l~~ 440 (530)
.....+..++..+.||-+|||+.+|..
T Consensus 458 i~~~l~~~la~~t~gy~gaDlkaLCTe 484 (1080)
T KOG0732|consen 458 ISRELLLWLAEETSGYGGADLKALCTE 484 (1080)
T ss_pred CCHHHHHHHHHhccccchHHHHHHHHH
Confidence 566778889999999999999999974
No 38
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=6e-28 Score=250.33 Aligned_cols=248 Identities=17% Similarity=0.251 Sum_probs=181.4
Q ss_pred CCCCCCcccc--cC-ChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcE-EEEecC
Q 009640 187 FRHPSTFETL--AL-EPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDV-YDLELT 262 (530)
Q Consensus 187 ~~~~~~f~~l--~~-~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i-~~l~l~ 262 (530)
..+...|+++ +| +.+.-...+..+..-+..|+.-.++|+++-+|+|||||||||||.+|+.|..-|+..- -.++..
T Consensus 212 i~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGP 291 (744)
T KOG0741|consen 212 INPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGP 291 (744)
T ss_pred cCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcH
Confidence 3455578887 23 3344444455555555689999999999999999999999999999999999997543 233333
Q ss_pred cc------CChHHHHHHHHhc----------CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhcccccc
Q 009640 263 KV------TDNSELRALLLQT----------TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIAS 326 (530)
Q Consensus 263 ~~------~~~~~L~~l~~~~----------~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 326 (530)
++ .++.++|+||..+ +.-.||++||||+++..++..
T Consensus 292 eIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~---------------------------- 343 (744)
T KOG0741|consen 292 EILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSM---------------------------- 343 (744)
T ss_pred HHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCC----------------------------
Confidence 22 4678899999876 234699999999997322211
Q ss_pred ccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHh
Q 009640 327 STCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNY 406 (530)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~ 406 (530)
.++......++++||.-|||+.+ -.+++||+-||+++.+|+||+||||+..++++++||++.|.+|++.+
T Consensus 344 --------~g~TGVhD~VVNQLLsKmDGVeq--LNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IH 413 (744)
T KOG0741|consen 344 --------AGSTGVHDTVVNQLLSKMDGVEQ--LNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIH 413 (744)
T ss_pred --------CCCCCccHHHHHHHHHhcccHHh--hhcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhh
Confidence 02345567789999999999987 47899999999999999999999999999999999999999999877
Q ss_pred hCCcC-ccc--hHHHHHHHHHhCCCCCHHHHHHHHHHhccCHHHHHHHHHH----------HHHHhhhcccccccccccc
Q 009640 407 LGIES-HHA--LFDVVESCIRAGGALTPAQIGEVLLRNRGNVDLAMKEVVS----------AMQAKILSGREVMECDELV 473 (530)
Q Consensus 407 l~~~~-~~~--~~~~i~~l~~~~~~~spadi~~~l~~~~~d~~~al~~l~~----------~l~~~~~~~~~~~~~~~~~ 473 (530)
..... +.. ....+++++..|..||+|+|..++..+. ..|+.+.+. .++.-+.+..++..+.+-+
T Consensus 414 T~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~---S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dV 490 (744)
T KOG0741|consen 414 TKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQ---SFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDV 490 (744)
T ss_pred hhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHH---HHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhc
Confidence 65321 110 1224778888899999999999997655 445544432 2233344555555555554
Q ss_pred cc
Q 009640 474 IT 475 (530)
Q Consensus 474 ~~ 475 (530)
.|
T Consensus 491 kP 492 (744)
T KOG0741|consen 491 KP 492 (744)
T ss_pred Cc
Confidence 44
No 39
>PF14363 AAA_assoc: Domain associated at C-terminal with AAA
Probab=99.87 E-value=6.2e-22 Score=168.61 Aligned_cols=96 Identities=34% Similarity=0.585 Sum_probs=89.6
Q ss_pred hChHHHHHHHHHHHHHhhh-hcCCceEEEEecccCCCCCCcChHHHHHHHHhhccCCCCCccccceeecccCCCCceEEE
Q 009640 20 VLPSQLLSLLHSFYESLQD-LFSPYSYFEIPEFNGYCGVDVNDLYRHVNLYLNSVNPAGSSTCRRLTLSRSRSSNRISFT 98 (530)
Q Consensus 20 ~~p~~l~~~~~~~~~~~~~-~~~~~~~~~i~e~~~~~~~~~n~~~~a~~~yl~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 98 (530)
|+|++|++++.+++++++. +++||+||+|+|++|. ++|++|+|+++||+++++..+ +||++++++++++++++
T Consensus 1 ~~P~~lr~~~~~~~~~~~~~~~s~~~ti~I~E~~g~---~~N~ly~a~~~YL~s~~s~~a---~rL~~~~~~~~~~~~l~ 74 (98)
T PF14363_consen 1 LLPHELRSYLRSLLRRLFSSRFSPYLTIVIPEFDGL---SRNELYDAAQAYLSSKISPSA---RRLKASKSKNSKNLVLS 74 (98)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCCcEEEEEEeCCCc---cccHHHHHHHHHHhhccCccc---ceeeecccCCCCceEEe
Confidence 6899999999999987665 9999999999999974 899999999999999987776 89999999999999999
Q ss_pred eCCCCeEeecccCeEEEEEEEee
Q 009640 99 VAPNHTVHDSFSGHSLSWTHHVD 121 (530)
Q Consensus 99 ~~~~~~~~d~f~g~~~~w~~~~~ 121 (530)
|++||+|+|+|+|+++||+++++
T Consensus 75 l~~~e~V~D~F~Gv~v~W~~~~~ 97 (98)
T PF14363_consen 75 LDDGEEVVDVFEGVKVWWSSVCT 97 (98)
T ss_pred cCCCCEEEEEECCEEEEEEEEcc
Confidence 99999999999999999998764
No 40
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=7.8e-21 Score=192.58 Aligned_cols=248 Identities=23% Similarity=0.264 Sum_probs=173.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhccccC----CCCCCCCCccccCCCCCCCcccccCChhhhHHHHHHHHHHHcChh
Q 009640 143 QTLLSAYLDHVTSRAEEFERVSRERRLFTNN----GHGSYDSGWVSVPFRHPSTFETLALEPQLKKQITEDLTAFANGKE 218 (530)
Q Consensus 143 ~~vl~~yl~~v~~~~~~~~~~~~~~~l~~~~----~~~~~~~~w~~~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~ 218 (530)
..|...|+..++-.-.-+++..+-+.-+... .++-. .-..........|++|+..+.+++.|.+.-..-.+.+.
T Consensus 302 ~~V~w~yi~r~LGqPSLiREsSrg~~pw~gsls~~k~~i~--~~~~~s~~gk~pl~~ViL~psLe~Rie~lA~aTaNTK~ 379 (630)
T KOG0742|consen 302 TLVTWRYIERRLGQPSLIRESSRGRFPWIGSLSALKHPIQ--GSRSASSRGKDPLEGVILHPSLEKRIEDLAIATANTKK 379 (630)
T ss_pred chhHHHHHHHHcCCchhhhhhccccCCCcccHHHHhchhh--hhHhhhhcCCCCcCCeecCHHHHHHHHHHHHHhccccc
Confidence 3677778777776655555444322111000 00000 00112234455699999999999998886665555443
Q ss_pred hHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccC-----ChHHHHHHHHhc---CCCeEEEEcCccc
Q 009640 219 FYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVT-----DNSELRALLLQT---TNRSIIVIEDIDC 290 (530)
Q Consensus 219 ~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~-----~~~~L~~l~~~~---~~~sII~IDeID~ 290 (530)
. ..+-|++|||||||||||++++-||.+.|+++-.+...++. .-+.+.++|..+ ...-+|||||.|+
T Consensus 380 h-----~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~qaVTkiH~lFDWakkS~rGLllFIDEADA 454 (630)
T KOG0742|consen 380 H-----QAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGAQAVTKIHKLFDWAKKSRRGLLLFIDEADA 454 (630)
T ss_pred c-----cchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccchHHHHHHHHHHHHHhhcccceEEEehhhHH
Confidence 1 22348899999999999999999999999999888777663 346688888866 3456899999999
Q ss_pred hhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeC
Q 009640 291 SVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTN 370 (530)
Q Consensus 291 ~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN 370 (530)
++- +|.+. ..++..+..|+.||--. |-. +..++++.+||
T Consensus 455 FLc------------------eRnkt-------------------ymSEaqRsaLNAlLfRT-Gdq---SrdivLvlAtN 493 (630)
T KOG0742|consen 455 FLC------------------ERNKT-------------------YMSEAQRSALNALLFRT-GDQ---SRDIVLVLATN 493 (630)
T ss_pred HHH------------------Hhchh-------------------hhcHHHHHHHHHHHHHh-ccc---ccceEEEeccC
Confidence 862 22211 22344567788887544 333 35688899999
Q ss_pred CCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCc-------Cc-------------------cchHHHHHHHHH
Q 009640 371 HRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIE-------SH-------------------HALFDVVESCIR 424 (530)
Q Consensus 371 ~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~-------~~-------------------~~~~~~i~~l~~ 424 (530)
+|.+||.|+-. |||..|+||+|..++|..|+..||... .. .+....+.+.+.
T Consensus 494 rpgdlDsAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAk 571 (630)
T KOG0742|consen 494 RPGDLDSAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAK 571 (630)
T ss_pred CccchhHHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHH
Confidence 99999999999 999999999999999999999988521 10 012345677888
Q ss_pred hCCCCCHHHHHHHHHH
Q 009640 425 AGGALTPAQIGEVLLR 440 (530)
Q Consensus 425 ~~~~~spadi~~~l~~ 440 (530)
.|.|||+.+|+.++..
T Consensus 572 kTeGfSGREiakLva~ 587 (630)
T KOG0742|consen 572 KTEGFSGREIAKLVAS 587 (630)
T ss_pred hccCCcHHHHHHHHHH
Confidence 8999999999998763
No 41
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.83 E-value=1.7e-20 Score=166.85 Aligned_cols=123 Identities=28% Similarity=0.496 Sum_probs=100.9
Q ss_pred EEEECCCCCChhHHHHHHHHHcCCcEEEEecCccC------ChHHHHHHHHhc--CC-CeEEEEcCccchhhhhhhhhhc
Q 009640 231 YLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVT------DNSELRALLLQT--TN-RSIIVIEDIDCSVDLTADRMLK 301 (530)
Q Consensus 231 ~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~------~~~~L~~l~~~~--~~-~sII~IDeID~~~~~~~~r~~~ 301 (530)
+|||||||||||++++++|++++.+++.++...+. ....+..+|.++ .. |+||+|||+|.+++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~------ 74 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS------ 74 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC------
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc------
Confidence 68999999999999999999999999999987764 345677778775 44 8999999999985311
Q ss_pred ccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhc
Q 009640 302 SSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIR 381 (530)
Q Consensus 302 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlR 381 (530)
...........+..|++.++..... ..+++||+|||.++.+||+|+|
T Consensus 75 --------------------------------~~~~~~~~~~~~~~L~~~l~~~~~~-~~~~~vI~ttn~~~~i~~~l~~ 121 (132)
T PF00004_consen 75 --------------------------------QPSSSSFEQRLLNQLLSLLDNPSSK-NSRVIVIATTNSPDKIDPALLR 121 (132)
T ss_dssp --------------------------------STSSSHHHHHHHHHHHHHHHTTTTT-SSSEEEEEEESSGGGSCHHHHS
T ss_pred --------------------------------ccccccccccccceeeecccccccc-cccceeEEeeCChhhCCHhHHh
Confidence 0022344667889999999988763 4569999999999999999999
Q ss_pred CCceeEEEEeCC
Q 009640 382 CGRMDVHVSLGT 393 (530)
Q Consensus 382 pGR~d~~I~~~~ 393 (530)
+||+..|+++.
T Consensus 122 -~rf~~~i~~~~ 132 (132)
T PF00004_consen 122 -SRFDRRIEFPL 132 (132)
T ss_dssp -TTSEEEEEE-S
T ss_pred -CCCcEEEEcCC
Confidence 99999999974
No 42
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.83 E-value=3.6e-19 Score=170.97 Aligned_cols=167 Identities=19% Similarity=0.195 Sum_probs=113.4
Q ss_pred CCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccCCh
Q 009640 188 RHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVTDN 267 (530)
Q Consensus 188 ~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~~~ 267 (530)
.+|.+|++++|+++++..+.-.+.....+.+. -..+||||||||||||||..||++++.++..++...+...
T Consensus 18 lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~--------l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~ 89 (233)
T PF05496_consen 18 LRPKSLDEFIGQEHLKGNLKILIRAAKKRGEA--------LDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKA 89 (233)
T ss_dssp TS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS-----------EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SC
T ss_pred cCCCCHHHccCcHHHHhhhHHHHHHHHhcCCC--------cceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhH
Confidence 47889999999999998877666655443321 2479999999999999999999999999999988777778
Q ss_pred HHHHHHHHhcCCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHH
Q 009640 268 SELRALLLQTTNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSG 347 (530)
Q Consensus 268 ~~L~~l~~~~~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 347 (530)
.++..++.....+.|||||||+.+-.. ....
T Consensus 90 ~dl~~il~~l~~~~ILFIDEIHRlnk~-------------------------------------------------~qe~ 120 (233)
T PF05496_consen 90 GDLAAILTNLKEGDILFIDEIHRLNKA-------------------------------------------------QQEI 120 (233)
T ss_dssp HHHHHHHHT--TT-EEEECTCCC--HH-------------------------------------------------HHHH
T ss_pred HHHHHHHHhcCCCcEEEEechhhccHH-------------------------------------------------HHHH
Confidence 899999999989999999999998211 1112
Q ss_pred HhhhccCCc-----cCC---------CCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCcc
Q 009640 348 LLNFTDGLW-----SCC---------SEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHH 413 (530)
Q Consensus 348 LLn~lDgl~-----s~~---------~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~ 413 (530)
|+..|+... ..+ -...-+|++|++...|.++|+. ||.....+.+.+.++...|+++........
T Consensus 121 LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~ 198 (233)
T PF05496_consen 121 LLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIE 198 (233)
T ss_dssp HHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-E
T ss_pred HHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCC
Confidence 233222111 000 1234689999999999999999 999999999999999999998766554444
No 43
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1.8e-18 Score=185.42 Aligned_cols=253 Identities=17% Similarity=0.203 Sum_probs=175.9
Q ss_pred ccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcC----CcEEEEecCccCC--h
Q 009640 194 ETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLC----YDVYDLELTKVTD--N 267 (530)
Q Consensus 194 ~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~----~~i~~l~l~~~~~--~ 267 (530)
.+++..+..|++..++...+ +.....+||+||+|||||.|++++++++. +++..++++.+.. -
T Consensus 408 ~d~i~~~s~kke~~n~~~sp-----------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~ 476 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSP-----------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSL 476 (952)
T ss_pred Cceeecchhhhhhhhhhccc-----------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhH
Confidence 44555555555554433222 33346899999999999999999999984 3344556665532 2
Q ss_pred HH----HHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcch
Q 009640 268 SE----LRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESG 341 (530)
Q Consensus 268 ~~----L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (530)
.. |+.+|..+ .+||||++||+||++.. ...+++.....
T Consensus 477 e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~------------------------------------s~~e~~q~~~~ 520 (952)
T KOG0735|consen 477 EKIQKFLNNVFSEALWYAPSIIVLDDLDCLASA------------------------------------SSNENGQDGVV 520 (952)
T ss_pred HHHHHHHHHHHHHHHhhCCcEEEEcchhhhhcc------------------------------------CcccCCcchHH
Confidence 23 44555555 79999999999999630 00111223333
Q ss_pred hhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCccchHHHHHH
Q 009640 342 RVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHHALFDVVES 421 (530)
Q Consensus 342 ~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~i~~ 421 (530)
...+..+||.+--.....+..+.+|+|.+....|+|-|..|++|+.++.++.|+..+|.+|+++.+........++.++-
T Consensus 521 ~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ 600 (952)
T KOG0735|consen 521 SERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDF 600 (952)
T ss_pred HHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 44556666554333322344568899999999999999999999999999999999999999999876543335566666
Q ss_pred HHHhCCCCCHHHHHHHHHHhccCHHHHHHHHHHHHHHhhhccccccccccccccCCCCcccccCCC-CcccCCCCCC
Q 009640 422 CIRAGGALTPAQIGEVLLRNRGNVDLAMKEVVSAMQAKILSGREVMECDELVITRSPESVVVVRSP-ENWDSSPGGK 497 (530)
Q Consensus 422 l~~~~~~~spadi~~~l~~~~~d~~~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~w~~~~g~~ 497 (530)
++..|.||.+-|+.-++.++-. .|+...+...+ +-++...+..+.+-+.|...+++....+. -.|.++||..
T Consensus 601 ls~~TEGy~~~DL~ifVeRai~---~a~leris~~~-klltke~f~ksL~~F~P~aLR~ik~~k~tgi~w~digg~~ 673 (952)
T KOG0735|consen 601 LSVKTEGYLATDLVIFVERAIH---EAFLERISNGP-KLLTKELFEKSLKDFVPLALRGIKLVKSTGIRWEDIGGLF 673 (952)
T ss_pred HHHhcCCccchhHHHHHHHHHH---HHHHHHhccCc-ccchHHHHHHHHHhcChHHhhhccccccCCCCceecccHH
Confidence 8888999999999999865442 22211111111 25677778888888889999999877766 8999998864
No 44
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.77 E-value=1.2e-17 Score=173.07 Aligned_cols=192 Identities=16% Similarity=0.166 Sum_probs=136.1
Q ss_pred CCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccCC
Q 009640 187 FRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVTD 266 (530)
Q Consensus 187 ~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~~ 266 (530)
...|.+|++++|.++.++.+...+....... ...+++|||||||||||++|+++|++++.++..++...+..
T Consensus 18 ~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~~--------~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~ 89 (328)
T PRK00080 18 SLRPKSLDEFIGQEKVKENLKIFIEAAKKRG--------EALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK 89 (328)
T ss_pred hcCcCCHHHhcCcHHHHHHHHHHHHHHHhcC--------CCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC
Confidence 3467899999999999998887776544322 22468999999999999999999999999988877766666
Q ss_pred hHHHHHHHHhcCCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHH
Q 009640 267 NSELRALLLQTTNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLS 346 (530)
Q Consensus 267 ~~~L~~l~~~~~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 346 (530)
..++..++.....++||||||||.+.....+
T Consensus 90 ~~~l~~~l~~l~~~~vl~IDEi~~l~~~~~e------------------------------------------------- 120 (328)
T PRK00080 90 PGDLAAILTNLEEGDVLFIDEIHRLSPVVEE------------------------------------------------- 120 (328)
T ss_pred hHHHHHHHHhcccCCEEEEecHhhcchHHHH-------------------------------------------------
Confidence 7788888888888999999999987311100
Q ss_pred HHhhhccCC---------ccC-----CCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCc
Q 009640 347 GLLNFTDGL---------WSC-----CSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESH 412 (530)
Q Consensus 347 ~LLn~lDgl---------~s~-----~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~ 412 (530)
.|.+.|+.. .+. .-....+|++||++..++++|.+ ||+..+.|++++.+++..|++...+....
T Consensus 121 ~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~ 198 (328)
T PRK00080 121 ILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGV 198 (328)
T ss_pred HHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCC
Confidence 011111110 000 01235789999999999999998 99999999999999999999987765443
Q ss_pred cchHHHHHHHHHhCCCCCHHHHHHHH
Q 009640 413 HALFDVVESCIRAGGALTPAQIGEVL 438 (530)
Q Consensus 413 ~~~~~~i~~l~~~~~~~spadi~~~l 438 (530)
....+.+..++.. .+-+|..+..++
T Consensus 199 ~~~~~~~~~ia~~-~~G~pR~a~~~l 223 (328)
T PRK00080 199 EIDEEGALEIARR-SRGTPRIANRLL 223 (328)
T ss_pred CcCHHHHHHHHHH-cCCCchHHHHHH
Confidence 3222334444443 223444444444
No 45
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.76 E-value=2.1e-17 Score=169.19 Aligned_cols=159 Identities=18% Similarity=0.194 Sum_probs=120.0
Q ss_pred CcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccCChHHHH
Q 009640 192 TFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVTDNSELR 271 (530)
Q Consensus 192 ~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~~~~~L~ 271 (530)
+|++++|++++++.|...+......+. ...+++||||||||||+|++++|++++.++..+..+.......+.
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~~~--------~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l~ 73 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMRQE--------ALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLA 73 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhcCC--------CCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhHH
Confidence 689999999999998887765544332 235799999999999999999999999998777666555566777
Q ss_pred HHHHhcCCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhh
Q 009640 272 ALLLQTTNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNF 351 (530)
Q Consensus 272 ~l~~~~~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~ 351 (530)
..+.....+.||||||||.+.+.. ...|++.
T Consensus 74 ~~l~~~~~~~vl~iDEi~~l~~~~-------------------------------------------------~e~l~~~ 104 (305)
T TIGR00635 74 AILTNLEEGDVLFIDEIHRLSPAV-------------------------------------------------EELLYPA 104 (305)
T ss_pred HHHHhcccCCEEEEehHhhhCHHH-------------------------------------------------HHHhhHH
Confidence 777777888999999999873100 0111111
Q ss_pred ccCCc--------------cCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCC
Q 009640 352 TDGLW--------------SCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGI 409 (530)
Q Consensus 352 lDgl~--------------s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~ 409 (530)
++... .......++|++||++..++++|++ ||...+.+++++.++...+++...+.
T Consensus 105 ~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~ 174 (305)
T TIGR00635 105 MEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGL 174 (305)
T ss_pred HhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHH
Confidence 11100 0001336789999999999999999 99999999999999999999877653
No 46
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=3.8e-18 Score=169.08 Aligned_cols=178 Identities=23% Similarity=0.321 Sum_probs=129.8
Q ss_pred CcccccCChhhhHHHHHHHHHHHcChhhHhh-hcCCCCceEEEECCCCCChhHHHHHHHHHcCC---------cEEEEec
Q 009640 192 TFETLALEPQLKKQITEDLTAFANGKEFYHR-VGRAWKRGYLLYGPPGSGKSSLIAAMANYLCY---------DVYDLEL 261 (530)
Q Consensus 192 ~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~-~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~---------~i~~l~l 261 (530)
-|+.++.+..+|+.+..+...-+.-.+.-.. --+.|.|-+|||||||||||+|++|+|..|.. .++.++.
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence 4688899999999999887765542221111 22688999999999999999999999999832 3344554
Q ss_pred Ccc------CChHHHHHHHHhc-------CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhcccccccc
Q 009640 262 TKV------TDNSELRALLLQT-------TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASST 328 (530)
Q Consensus 262 ~~~------~~~~~L~~l~~~~-------~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 328 (530)
.++ .+...+.++|.+. ..--.++|||++++.- .|....
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~---aR~s~~-------------------------- 270 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAA---ARTSAS-------------------------- 270 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHH---HHHhhh--------------------------
Confidence 333 1223355555543 1224577999999732 121100
Q ss_pred CCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhh
Q 009640 329 CGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYL 407 (530)
Q Consensus 329 ~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l 407 (530)
+.++....-++++.||.+||.+.. ..++++++|+|-.+.||-|+.. |-|...++++|+.+++..|++..+
T Consensus 271 -----S~~EpsDaIRvVNalLTQlDrlK~--~~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~Ilksci 340 (423)
T KOG0744|consen 271 -----SRNEPSDAIRVVNALLTQLDRLKR--YPNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCI 340 (423)
T ss_pred -----cCCCCchHHHHHHHHHHHHHHhcc--CCCEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHH
Confidence 002233455788999999999987 4789999999999999999999 999999999999999999998776
No 47
>PRK04195 replication factor C large subunit; Provisional
Probab=99.74 E-value=5.6e-17 Score=176.32 Aligned_cols=165 Identities=22% Similarity=0.365 Sum_probs=127.1
Q ss_pred CccccCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEe
Q 009640 181 GWVSVPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLE 260 (530)
Q Consensus 181 ~w~~~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~ 260 (530)
.| +..+.|.+|++++|++++++.+...+..+.++. + ++++|||||||||||++|+++|++++++++.++
T Consensus 3 ~W--~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g~--------~-~~~lLL~GppG~GKTtla~ala~el~~~~ieln 71 (482)
T PRK04195 3 PW--VEKYRPKTLSDVVGNEKAKEQLREWIESWLKGK--------P-KKALLLYGPPGVGKTSLAHALANDYGWEVIELN 71 (482)
T ss_pred Cc--hhhcCCCCHHHhcCCHHHHHHHHHHHHHHhcCC--------C-CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEc
Confidence 57 778999999999999999999999888776422 2 579999999999999999999999999999999
Q ss_pred cCccCChHHHHHHHHhc--------CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCC
Q 009640 261 LTKVTDNSELRALLLQT--------TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNN 332 (530)
Q Consensus 261 l~~~~~~~~L~~l~~~~--------~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 332 (530)
.+...+...+..++... ..+.||||||+|.+..
T Consensus 72 asd~r~~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~--------------------------------------- 112 (482)
T PRK04195 72 ASDQRTADVIERVAGEAATSGSLFGARRKLILLDEVDGIHG--------------------------------------- 112 (482)
T ss_pred ccccccHHHHHHHHHHhhccCcccCCCCeEEEEecCccccc---------------------------------------
Confidence 98877666666655432 2578999999998731
Q ss_pred CCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCC
Q 009640 333 NNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGI 409 (530)
Q Consensus 333 ~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~ 409 (530)
......+..|++.++. ....||++||.+..+++.-+| +....|.|+.|+..+...+++..+..
T Consensus 113 ------~~d~~~~~aL~~~l~~------~~~~iIli~n~~~~~~~k~Lr--sr~~~I~f~~~~~~~i~~~L~~i~~~ 175 (482)
T PRK04195 113 ------NEDRGGARAILELIKK------AKQPIILTANDPYDPSLRELR--NACLMIEFKRLSTRSIVPVLKRICRK 175 (482)
T ss_pred ------ccchhHHHHHHHHHHc------CCCCEEEeccCccccchhhHh--ccceEEEecCCCHHHHHHHHHHHHHH
Confidence 0011234567777662 223477789999988873344 34467999999999999988877643
No 48
>CHL00181 cbbX CbbX; Provisional
Probab=99.73 E-value=6.7e-17 Score=164.01 Aligned_cols=169 Identities=19% Similarity=0.291 Sum_probs=122.9
Q ss_pred ccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCC-ce--EEEECCCCCChhHHHHHHHHHcC-------CcEEEEecCc
Q 009640 194 ETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWK-RG--YLLYGPPGSGKSSLIAAMANYLC-------YDVYDLELTK 263 (530)
Q Consensus 194 ~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~-rG--~LL~GPPGTGKTsLa~AiA~~l~-------~~i~~l~l~~ 263 (530)
++++|.+++|++|.+.+ .++..+..+.+.|...+ .| +||+||||||||++|+++|..+. .+++.++.+.
T Consensus 23 ~~l~Gl~~vK~~i~e~~-~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIA-ALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHH-HHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 47999999999999865 44555677777887654 24 89999999999999999999862 2467766544
Q ss_pred cC------ChHHHHHHHHhcCCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCC
Q 009640 264 VT------DNSELRALLLQTTNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNG 337 (530)
Q Consensus 264 ~~------~~~~L~~l~~~~~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 337 (530)
+. +......+|.++ .++||||||+|.+.... ..
T Consensus 102 l~~~~~g~~~~~~~~~l~~a-~ggVLfIDE~~~l~~~~----------------------------------------~~ 140 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKA-MGGVLFIDEAYYLYKPD----------------------------------------NE 140 (287)
T ss_pred HHHHHhccchHHHHHHHHHc-cCCEEEEEccchhccCC----------------------------------------Cc
Confidence 31 223445566665 45899999999873100 11
Q ss_pred CcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCC-----CCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCc
Q 009640 338 EESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRD-----SVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIE 410 (530)
Q Consensus 338 ~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~-----~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~ 410 (530)
..........|+..|+.. ...++||++++... .++|+|.+ ||+.+|+|+.++.+++..|+..++...
T Consensus 141 ~~~~~e~~~~L~~~me~~----~~~~~vI~ag~~~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~ 212 (287)
T CHL00181 141 RDYGSEAIEILLQVMENQ----RDDLVVIFAGYKDRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQ 212 (287)
T ss_pred cchHHHHHHHHHHHHhcC----CCCEEEEEeCCcHHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHh
Confidence 122355677888888743 24577777775422 34799999 999999999999999999999998643
No 49
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.72 E-value=2e-16 Score=158.60 Aligned_cols=169 Identities=12% Similarity=0.215 Sum_probs=118.9
Q ss_pred cccccCChhhhHHHHHHHHHHHcChhhHhhhcCCC---CceEEEECCCCCChhHHHHHHHHHcC-------CcEEEEecC
Q 009640 193 FETLALEPQLKKQITEDLTAFANGKEFYHRVGRAW---KRGYLLYGPPGSGKSSLIAAMANYLC-------YDVYDLELT 262 (530)
Q Consensus 193 f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~---~rG~LL~GPPGTGKTsLa~AiA~~l~-------~~i~~l~l~ 262 (530)
+++++|.+++|++|.+.+...... ....+.|... ..++|||||||||||++|+++|+.+. .+++.++.+
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 578999999999999866554333 3344455542 34689999999999999999998762 245555544
Q ss_pred ccC------ChHHHHHHHHhcCCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCC
Q 009640 263 KVT------DNSELRALLLQTTNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNN 336 (530)
Q Consensus 263 ~~~------~~~~L~~l~~~~~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 336 (530)
.+. ....++.+|..+. ++||||||+|.+.. + .
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~-~~VL~IDE~~~L~~--~---------------------------------------~ 121 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL-GGVLFIDEAYSLAR--G---------------------------------------G 121 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc-CCEEEEechhhhcc--C---------------------------------------C
Confidence 432 2345667776654 58999999999731 0 0
Q ss_pred CCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCC-----CCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCc
Q 009640 337 GEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRD-----SVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIE 410 (530)
Q Consensus 337 ~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~-----~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~ 410 (530)
........+..|++.|+... ...++|++++..+ .++|+|.+ ||+.+|+|+.++.+++..|++.++...
T Consensus 122 ~~~~~~~~i~~Ll~~~e~~~----~~~~vila~~~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~ 194 (261)
T TIGR02881 122 EKDFGKEAIDTLVKGMEDNR----NEFVLILAGYSDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKER 194 (261)
T ss_pred ccchHHHHHHHHHHHHhccC----CCEEEEecCCcchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHc
Confidence 11112345677888887542 3456666654332 47899999 999999999999999999999998644
No 50
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.72 E-value=1.6e-16 Score=161.19 Aligned_cols=169 Identities=17% Similarity=0.249 Sum_probs=124.5
Q ss_pred cccCChhhhHHHHHHHHHHHcChhhHhhhcCCC---CceEEEECCCCCChhHHHHHHHHHcCC-------cEEEEecCcc
Q 009640 195 TLALEPQLKKQITEDLTAFANGKEFYHRVGRAW---KRGYLLYGPPGSGKSSLIAAMANYLCY-------DVYDLELTKV 264 (530)
Q Consensus 195 ~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~---~rG~LL~GPPGTGKTsLa~AiA~~l~~-------~i~~l~l~~~ 264 (530)
.++|.+++|++|.+.+.. +..++.+.+.|.+. ..++||+||||||||++|+++|..+.. +++.++...+
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 689999999999885554 66777788888764 348999999999999999999988732 5666665433
Q ss_pred C------ChHHHHHHHHhcCCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCC
Q 009640 265 T------DNSELRALLLQTTNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGE 338 (530)
Q Consensus 265 ~------~~~~L~~l~~~~~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (530)
. +...++.+|.++ .++||||||||.+.... ...
T Consensus 102 ~~~~~g~~~~~~~~~~~~a-~~gvL~iDEi~~L~~~~----------------------------------------~~~ 140 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRA-MGGVLFIDEAYYLYRPD----------------------------------------NER 140 (284)
T ss_pred hHhhcccchHHHHHHHHHc-cCcEEEEechhhhccCC----------------------------------------Ccc
Confidence 1 234456667665 45899999999873100 011
Q ss_pred cchhhhHHHHhhhccCCccCCCCCeEEEEEeCCC--C---CCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcC
Q 009640 339 ESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHR--D---SVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIES 411 (530)
Q Consensus 339 ~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~--~---~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~ 411 (530)
.........|++.|+.- ..+++||++++.. + .++|+|.+ ||+.+|+|+.++.+++..|+++++....
T Consensus 141 ~~~~~~~~~Ll~~le~~----~~~~~vI~a~~~~~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~ 212 (284)
T TIGR02880 141 DYGQEAIEILLQVMENQ----RDDLVVILAGYKDRMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQ 212 (284)
T ss_pred chHHHHHHHHHHHHhcC----CCCEEEEEeCCcHHHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhc
Confidence 22345667888888743 3567777776543 3 35899999 9999999999999999999999987543
No 51
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.70 E-value=5e-16 Score=152.20 Aligned_cols=179 Identities=18% Similarity=0.199 Sum_probs=132.0
Q ss_pred CCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccCCh
Q 009640 188 RHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVTDN 267 (530)
Q Consensus 188 ~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~~~ 267 (530)
.+|.+|++.+|++++|+++.-.+..-..+.+. --.+|||||||.||||||.-||+++|.++-..+...+...
T Consensus 20 lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~--------lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~ 91 (332)
T COG2255 20 LRPKTLDEFIGQEKVKEQLQIFIKAAKKRGEA--------LDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKP 91 (332)
T ss_pred cCcccHHHhcChHHHHHHHHHHHHHHHhcCCC--------cCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccCh
Confidence 47889999999999999888777766555442 2579999999999999999999999999999988888889
Q ss_pred HHHHHHHHhcCCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHH
Q 009640 268 SELRALLLQTTNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSG 347 (530)
Q Consensus 268 ~~L~~l~~~~~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 347 (530)
.+|..+|.......|+|||||+.+.....+- .+..|++-...-..+. +...+.+
T Consensus 92 gDlaaiLt~Le~~DVLFIDEIHrl~~~vEE~-----------------LYpaMEDf~lDI~IG~------gp~Arsv--- 145 (332)
T COG2255 92 GDLAAILTNLEEGDVLFIDEIHRLSPAVEEV-----------------LYPAMEDFRLDIIIGK------GPAARSI--- 145 (332)
T ss_pred hhHHHHHhcCCcCCeEEEehhhhcChhHHHH-----------------hhhhhhheeEEEEEcc------CCccceE---
Confidence 9999999999999999999999984211110 0111111000000000 0000100
Q ss_pred HhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcC
Q 009640 348 LLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIES 411 (530)
Q Consensus 348 LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~ 411 (530)
.|| -...-+|++|.+...|...|.. ||....++.+.+.++...|+++.-....
T Consensus 146 ---~ld------LppFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~ 198 (332)
T COG2255 146 ---RLD------LPPFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILG 198 (332)
T ss_pred ---ecc------CCCeeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhC
Confidence 011 1335689999999999999999 9999999999999999999987755433
No 52
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.70 E-value=4.2e-16 Score=178.17 Aligned_cols=158 Identities=25% Similarity=0.242 Sum_probs=115.5
Q ss_pred cccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccCCh-------
Q 009640 195 TLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVTDN------- 267 (530)
Q Consensus 195 ~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~~~------- 267 (530)
++.|++++|+.|.+.+....... ......+||+||||||||++|++||+.++.+++.++++.+.+.
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~-------~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~ 393 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRG-------KMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHR 393 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhc-------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCC
Confidence 47888999999888776543222 1223479999999999999999999999999999987655332
Q ss_pred --------HHHHHHHHhc-CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCC
Q 009640 268 --------SELRALLLQT-TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGE 338 (530)
Q Consensus 268 --------~~L~~l~~~~-~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (530)
..+.+.|..+ ..+.||||||||.+.. .
T Consensus 394 ~~~~g~~~g~i~~~l~~~~~~~~villDEidk~~~------------------------------------------~-- 429 (775)
T TIGR00763 394 RTYVGAMPGRIIQGLKKAKTKNPLFLLDEIDKIGS------------------------------------------S-- 429 (775)
T ss_pred CceeCCCCchHHHHHHHhCcCCCEEEEechhhcCC------------------------------------------c--
Confidence 2344555554 3445999999999831 0
Q ss_pred cchhhhHHHHhhhccCCc----cC-------CCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhh
Q 009640 339 ESGRVTLSGLLNFTDGLW----SC-------CSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYL 407 (530)
Q Consensus 339 ~~~~~~ls~LLn~lDgl~----s~-------~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l 407 (530)
......+.||..||... .. .-.++++|+|||.++.|||+|++ ||+ .|+|+.|+.+++..|+++|+
T Consensus 430 -~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 430 -FRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred -cCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHH
Confidence 00112356666666310 00 01468899999999999999999 996 68999999999999999987
No 53
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=6.8e-16 Score=166.29 Aligned_cols=154 Identities=19% Similarity=0.324 Sum_probs=115.7
Q ss_pred CCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCC-----------
Q 009640 186 PFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCY----------- 254 (530)
Q Consensus 186 ~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~----------- 254 (530)
...+|.+|++++|++++++.+...+ .... .+.+|||||||||||||+|+++|+.++.
T Consensus 6 ~kyRP~~~~divGq~~i~~~L~~~i----~~~~--------l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~ 73 (472)
T PRK14962 6 RKYRPKTFSEVVGQDHVKKLIINAL----KKNS--------ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNE 73 (472)
T ss_pred HHHCCCCHHHccCcHHHHHHHHHHH----HcCC--------CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcc
Confidence 3568999999999998866655533 3222 2457999999999999999999999865
Q ss_pred -------------cEEEEecCccCChHHHHHHHHhc------CCCeEEEEcCccchhhhhhhhhhcccCCccccccccch
Q 009640 255 -------------DVYDLELTKVTDNSELRALLLQT------TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSS 315 (530)
Q Consensus 255 -------------~i~~l~l~~~~~~~~L~~l~~~~------~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~ 315 (530)
+++.++.+.-.+-..++++...+ ....||||||+|.+-
T Consensus 74 c~~c~~i~~g~~~dv~el~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt----------------------- 130 (472)
T PRK14962 74 CRACRSIDEGTFMDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT----------------------- 130 (472)
T ss_pred cHHHHHHhcCCCCccEEEeCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH-----------------------
Confidence 57777765444556677665443 245799999999872
Q ss_pred hhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCC
Q 009640 316 SIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCG 395 (530)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~ 395 (530)
...+..||..++.. ++.+++|++||.+..++++|++ |+. .+.|..++
T Consensus 131 --------------------------~~a~~~LLk~LE~p----~~~vv~Ilattn~~kl~~~L~S--R~~-vv~f~~l~ 177 (472)
T PRK14962 131 --------------------------KEAFNALLKTLEEP----PSHVVFVLATTNLEKVPPTIIS--RCQ-VIEFRNIS 177 (472)
T ss_pred --------------------------HHHHHHHHHHHHhC----CCcEEEEEEeCChHhhhHHHhc--CcE-EEEECCcc
Confidence 12356788888743 3567788888888999999998 764 69999999
Q ss_pred HHHHHHHHHHhh
Q 009640 396 PHAFKVLAKNYL 407 (530)
Q Consensus 396 ~~~r~~i~~~~l 407 (530)
.++...+++..+
T Consensus 178 ~~el~~~L~~i~ 189 (472)
T PRK14962 178 DELIIKRLQEVA 189 (472)
T ss_pred HHHHHHHHHHHH
Confidence 999888877665
No 54
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.69 E-value=8.4e-16 Score=169.42 Aligned_cols=157 Identities=18% Similarity=0.296 Sum_probs=120.5
Q ss_pred CCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCC-----------
Q 009640 186 PFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCY----------- 254 (530)
Q Consensus 186 ~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~----------- 254 (530)
.+++|.+|++|+|++++++.|...+. ... ....||||||||||||++++++|+.+++
T Consensus 8 rKYRPqtFdEVIGQe~Vv~~L~~aL~----~gR--------L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~ 75 (830)
T PRK07003 8 RKWRPKDFASLVGQEHVVRALTHALD----GGR--------LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGV 75 (830)
T ss_pred HHhCCCcHHHHcCcHHHHHHHHHHHh----cCC--------CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcc
Confidence 34689999999999998887766542 211 2457999999999999999999998854
Q ss_pred -------------cEEEEecCccCChHHHHHHHHhc------CCCeEEEEcCccchhhhhhhhhhcccCCccccccccch
Q 009640 255 -------------DVYDLELTKVTDNSELRALLLQT------TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSS 315 (530)
Q Consensus 255 -------------~i~~l~l~~~~~~~~L~~l~~~~------~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~ 315 (530)
+++.++..+-.+-.+++.++... ....||||||+|.+-
T Consensus 76 C~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT----------------------- 132 (830)
T PRK07003 76 CRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT----------------------- 132 (830)
T ss_pred cHHHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCC-----------------------
Confidence 45666555434456677777653 245799999999872
Q ss_pred hhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCC
Q 009640 316 SIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCG 395 (530)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~ 395 (530)
....+.||..|+.. ...++||++||.+++|.+.+++ |+ .++.|..++
T Consensus 133 --------------------------~~A~NALLKtLEEP----P~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls 179 (830)
T PRK07003 133 --------------------------NHAFNAMLKTLEEP----PPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMP 179 (830)
T ss_pred --------------------------HHHHHHHHHHHHhc----CCCeEEEEEECChhhccchhhh--he-EEEecCCcC
Confidence 22467788888753 3568899999999999999998 77 679999999
Q ss_pred HHHHHHHHHHhhCCc
Q 009640 396 PHAFKVLAKNYLGIE 410 (530)
Q Consensus 396 ~~~r~~i~~~~l~~~ 410 (530)
.++....++..++.+
T Consensus 180 ~eeIv~~L~~Il~~E 194 (830)
T PRK07003 180 AGHIVSHLERILGEE 194 (830)
T ss_pred HHHHHHHHHHHHHHc
Confidence 999988888877543
No 55
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.68 E-value=2e-15 Score=155.26 Aligned_cols=196 Identities=15% Similarity=0.174 Sum_probs=135.6
Q ss_pred CCCccccCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEE
Q 009640 179 DSGWVSVPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYD 258 (530)
Q Consensus 179 ~~~w~~~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~ 258 (530)
+..| +..++|.+|+++++++++++.+...+. .. ..+..+|||||||||||++++++|++++.+++.
T Consensus 8 ~~~w--~~kyrP~~~~~~~~~~~~~~~l~~~~~----~~--------~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~ 73 (316)
T PHA02544 8 EFMW--EQKYRPSTIDECILPAADKETFKSIVK----KG--------RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLF 73 (316)
T ss_pred CCcc--eeccCCCcHHHhcCcHHHHHHHHHHHh----cC--------CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceE
Confidence 3468 778899999999999998887776553 11 124567779999999999999999999999999
Q ss_pred EecCccCChHHHHHHH----Hhc---CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCC
Q 009640 259 LELTKVTDNSELRALL----LQT---TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGN 331 (530)
Q Consensus 259 l~l~~~~~~~~L~~l~----~~~---~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 331 (530)
++.+. .....++..+ ... ..+.||||||+|.+..
T Consensus 74 i~~~~-~~~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~-------------------------------------- 114 (316)
T PHA02544 74 VNGSD-CRIDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL-------------------------------------- 114 (316)
T ss_pred eccCc-ccHHHHHHHHHHHHHhhcccCCCeEEEEECcccccC--------------------------------------
Confidence 98877 3233333322 111 3678999999997610
Q ss_pred CCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcC
Q 009640 332 NNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIES 411 (530)
Q Consensus 332 ~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~ 411 (530)
. .....|.+.++... ....+|+|||.+..++|++.+ |+. .+.++.|+.+++..+++.++..
T Consensus 115 ------~----~~~~~L~~~le~~~----~~~~~Ilt~n~~~~l~~~l~s--R~~-~i~~~~p~~~~~~~il~~~~~~-- 175 (316)
T PHA02544 115 ------A----DAQRHLRSFMEAYS----KNCSFIITANNKNGIIEPLRS--RCR-VIDFGVPTKEEQIEMMKQMIVR-- 175 (316)
T ss_pred ------H----HHHHHHHHHHHhcC----CCceEEEEcCChhhchHHHHh--hce-EEEeCCCCHHHHHHHHHHHHHH--
Confidence 0 01223444455432 456788999999999999999 885 6899999999999887764321
Q ss_pred ccchHHHHHHHH-HhCCCCCHHHHHHHHHHhccCHHHHHHHHH
Q 009640 412 HHALFDVVESCI-RAGGALTPAQIGEVLLRNRGNVDLAMKEVV 453 (530)
Q Consensus 412 ~~~~~~~i~~l~-~~~~~~spadi~~~l~~~~~d~~~al~~l~ 453 (530)
+...+ .....++++.+..++....++...++..+.
T Consensus 176 -------~~~~~~~~~~~i~~~al~~l~~~~~~d~r~~l~~l~ 211 (316)
T PHA02544 176 -------CKGILEAEGVEVDMKVLAALVKKNFPDFRRTINELQ 211 (316)
T ss_pred -------HHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Confidence 11111 224566666666666666666665555444
No 56
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=7e-16 Score=164.29 Aligned_cols=156 Identities=13% Similarity=0.254 Sum_probs=115.8
Q ss_pred cCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCC----------
Q 009640 185 VPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCY---------- 254 (530)
Q Consensus 185 ~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~---------- 254 (530)
...++|.+|++++|++.+.+.|...+. ... .+..||||||||||||++|+++|+.++.
T Consensus 9 ~~KyRP~~f~dvVGQe~iv~~L~~~i~----~~r--------i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg 76 (484)
T PRK14956 9 SRKYRPQFFRDVIHQDLAIGALQNALK----SGK--------IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCN 76 (484)
T ss_pred HHHhCCCCHHHHhChHHHHHHHHHHHH----cCC--------CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccC
Confidence 446789999999999998877666543 211 1346999999999999999999999865
Q ss_pred --------------cEEEEecCccCChHHHHHHHHhc------CCCeEEEEcCccchhhhhhhhhhcccCCccccccccc
Q 009640 255 --------------DVYDLELTKVTDNSELRALLLQT------TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRS 314 (530)
Q Consensus 255 --------------~i~~l~l~~~~~~~~L~~l~~~~------~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~ 314 (530)
+++.++...-.+-.+++.+.... ....|+||||+|.+-
T Consensus 77 ~C~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls---------------------- 134 (484)
T PRK14956 77 ECTSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT---------------------- 134 (484)
T ss_pred CCcHHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC----------------------
Confidence 35555543333445566665433 245699999999871
Q ss_pred hhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCC
Q 009640 315 SSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTC 394 (530)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p 394 (530)
....+.||..|+.- ...+++|++||.++.|.+++++ |+ .++.|..+
T Consensus 135 ---------------------------~~A~NALLKtLEEP----p~~viFILaTte~~kI~~TI~S--RC-q~~~f~~l 180 (484)
T PRK14956 135 ---------------------------DQSFNALLKTLEEP----PAHIVFILATTEFHKIPETILS--RC-QDFIFKKV 180 (484)
T ss_pred ---------------------------HHHHHHHHHHhhcC----CCceEEEeecCChhhccHHHHh--hh-heeeecCC
Confidence 23567888888742 3678899999999999999998 87 45888888
Q ss_pred CHHHHHHHHHHhhC
Q 009640 395 GPHAFKVLAKNYLG 408 (530)
Q Consensus 395 ~~~~r~~i~~~~l~ 408 (530)
+.++....++..+.
T Consensus 181 s~~~i~~~L~~i~~ 194 (484)
T PRK14956 181 PLSVLQDYSEKLCK 194 (484)
T ss_pred CHHHHHHHHHHHHH
Confidence 88877777766554
No 57
>PLN03025 replication factor C subunit; Provisional
Probab=99.68 E-value=5.8e-16 Score=159.78 Aligned_cols=188 Identities=15% Similarity=0.233 Sum_probs=132.7
Q ss_pred CccccCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcC-----Cc
Q 009640 181 GWVSVPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLC-----YD 255 (530)
Q Consensus 181 ~w~~~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~-----~~ 255 (530)
+| +..++|.+|++++|++++.+.|... +.... ...+|||||||||||++|.++|+++. ..
T Consensus 2 ~w--~~kyrP~~l~~~~g~~~~~~~L~~~----~~~~~---------~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~ 66 (319)
T PLN03025 2 PW--VEKYRPTKLDDIVGNEDAVSRLQVI----ARDGN---------MPNLILSGPPGTGKTTSILALAHELLGPNYKEA 66 (319)
T ss_pred Ch--hhhcCCCCHHHhcCcHHHHHHHHHH----HhcCC---------CceEEEECCCCCCHHHHHHHHHHHHhcccCccc
Confidence 47 6788999999999999877766543 22221 13699999999999999999999972 23
Q ss_pred EEEEecCccCChHHHHHHHH---hc------CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhcccccc
Q 009640 256 VYDLELTKVTDNSELRALLL---QT------TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIAS 326 (530)
Q Consensus 256 i~~l~l~~~~~~~~L~~l~~---~~------~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 326 (530)
+..++.++..+-..++..+. +. ..+.||+|||+|.+..
T Consensus 67 ~~eln~sd~~~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~--------------------------------- 113 (319)
T PLN03025 67 VLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS--------------------------------- 113 (319)
T ss_pred eeeecccccccHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCH---------------------------------
Confidence 55666665544444554432 21 2467999999998721
Q ss_pred ccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHh
Q 009640 327 STCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNY 406 (530)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~ 406 (530)
...+.|+..|+-.. ....+|++||.+..+.++|.+ |+ ..+.|+.|+.++....++..
T Consensus 114 ----------------~aq~aL~~~lE~~~----~~t~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i 170 (319)
T PLN03025 114 ----------------GAQQALRRTMEIYS----NTTRFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKV 170 (319)
T ss_pred ----------------HHHHHHHHHHhccc----CCceEEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHH
Confidence 12345666665432 334578899999999999998 65 46899999998887776654
Q ss_pred hCCcCccchHHHHHHHHHhCCCCCHHHHHHHHHHhccCHHHHHHHHHH
Q 009640 407 LGIESHHALFDVVESCIRAGGALTPAQIGEVLLRNRGNVDLAMKEVVS 454 (530)
Q Consensus 407 l~~~~~~~~~~~i~~l~~~~~~~spadi~~~l~~~~~d~~~al~~l~~ 454 (530)
+.. ++..++++.+..++..+.+|...++..+..
T Consensus 171 ~~~---------------egi~i~~~~l~~i~~~~~gDlR~aln~Lq~ 203 (319)
T PLN03025 171 VEA---------------EKVPYVPEGLEAIIFTADGDMRQALNNLQA 203 (319)
T ss_pred HHH---------------cCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 422 234577777777777777888888877763
No 58
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=5.2e-16 Score=169.13 Aligned_cols=157 Identities=18% Similarity=0.302 Sum_probs=122.2
Q ss_pred CCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCC-----------
Q 009640 186 PFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCY----------- 254 (530)
Q Consensus 186 ~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~----------- 254 (530)
..++|.+|++|+|++++++.|...+.. .+ ....|||+||+|||||++++++|+.++.
T Consensus 8 rKYRPqtFddVIGQe~vv~~L~~al~~----gR--------LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~ 75 (700)
T PRK12323 8 RKWRPRDFTTLVGQEHVVRALTHALEQ----QR--------LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITA 75 (700)
T ss_pred HHhCCCcHHHHcCcHHHHHHHHHHHHh----CC--------CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCC
Confidence 356899999999999988877765532 11 2357999999999999999999999865
Q ss_pred ------------------cEEEEecCccCChHHHHHHHHhc------CCCeEEEEcCccchhhhhhhhhhcccCCccccc
Q 009640 255 ------------------DVYDLELTKVTDNSELRALLLQT------TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAK 310 (530)
Q Consensus 255 ------------------~i~~l~l~~~~~~~~L~~l~~~~------~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~ 310 (530)
+++.++..+-.+-.++++++... ....|+||||+|.+-
T Consensus 76 ~PCG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls------------------ 137 (700)
T PRK12323 76 QPCGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT------------------ 137 (700)
T ss_pred CCCcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC------------------
Confidence 55666655444556777776653 245799999999871
Q ss_pred cccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEE
Q 009640 311 TKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVS 390 (530)
Q Consensus 311 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~ 390 (530)
....+.||+.|+.- ...++||++||.+++|.+.+++ |+ .++.
T Consensus 138 -------------------------------~~AaNALLKTLEEP----P~~v~FILaTtep~kLlpTIrS--RC-q~f~ 179 (700)
T PRK12323 138 -------------------------------NHAFNAMLKTLEEP----PEHVKFILATTDPQKIPVTVLS--RC-LQFN 179 (700)
T ss_pred -------------------------------HHHHHHHHHhhccC----CCCceEEEEeCChHhhhhHHHH--HH-Hhcc
Confidence 23467899988853 3568899999999999999998 76 6789
Q ss_pred eCCCCHHHHHHHHHHhhCCc
Q 009640 391 LGTCGPHAFKVLAKNYLGIE 410 (530)
Q Consensus 391 ~~~p~~~~r~~i~~~~l~~~ 410 (530)
|..++.++....++..+..+
T Consensus 180 f~~ls~eei~~~L~~Il~~E 199 (700)
T PRK12323 180 LKQMPPGHIVSHLDAILGEE 199 (700)
T ss_pred cCCCChHHHHHHHHHHHHHc
Confidence 99999999888888776543
No 59
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=6.4e-16 Score=167.50 Aligned_cols=190 Identities=14% Similarity=0.201 Sum_probs=140.2
Q ss_pred HHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccC------ChHHHHHHHHhc--CCC
Q 009640 209 DLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVT------DNSELRALLLQT--TNR 280 (530)
Q Consensus 209 ~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~------~~~~L~~l~~~~--~~~ 280 (530)
.+..++..+.--...++.....+||||+||||||++++++|.++|.+++.+++.++. ++..+...|.++ .+|
T Consensus 412 ~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~p 491 (953)
T KOG0736|consen 412 ELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSP 491 (953)
T ss_pred HHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCc
Confidence 344444443333333444556799999999999999999999999999999987763 456788888877 689
Q ss_pred eEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCC
Q 009640 281 SIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCS 360 (530)
Q Consensus 281 sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~ 360 (530)
+||||-++|.+.- ++ ++ +.+-.-...+..++. +|-.... .
T Consensus 492 avifl~~~dvl~i---d~---------------------------------dg--ged~rl~~~i~~~ls-~e~~~~~-~ 531 (953)
T KOG0736|consen 492 AVLFLRNLDVLGI---DQ---------------------------------DG--GEDARLLKVIRHLLS-NEDFKFS-C 531 (953)
T ss_pred eEEEEeccceeee---cC---------------------------------CC--chhHHHHHHHHHHHh-cccccCC-C
Confidence 9999999998730 00 00 111111223333443 3333322 4
Q ss_pred CCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCccchHHHHHHHHHhCCCCCHHHHHHHHHH
Q 009640 361 EEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHHALFDVVESCIRAGGALTPAQIGEVLLR 440 (530)
Q Consensus 361 ~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~i~~l~~~~~~~spadi~~~l~~ 440 (530)
...|||+||+..+.|++.+.+ -|-..|.++.|+.++|.+|++.|+...... .......++..+.+|+.+|+..++..
T Consensus 532 ~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~iLq~y~~~~~~n-~~v~~k~~a~~t~gfs~~~L~~l~~~ 608 (953)
T KOG0736|consen 532 PPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEILQWYLNHLPLN-QDVNLKQLARKTSGFSFGDLEALVAH 608 (953)
T ss_pred CceEEEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHhccccc-hHHHHHHHHHhcCCCCHHHHHHHhcC
Confidence 679999999999999999999 888899999999999999999999866544 34456788888999999999998854
Q ss_pred h
Q 009640 441 N 441 (530)
Q Consensus 441 ~ 441 (530)
.
T Consensus 609 ~ 609 (953)
T KOG0736|consen 609 S 609 (953)
T ss_pred c
Confidence 4
No 60
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=6.3e-16 Score=167.37 Aligned_cols=159 Identities=24% Similarity=0.248 Sum_probs=119.9
Q ss_pred cccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccCChHHHH---
Q 009640 195 TLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVTDNSELR--- 271 (530)
Q Consensus 195 ~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~~~~~L~--- 271 (530)
+-.|.+++|+.|++++.--...+.. ...-++|.||||+|||||+++||..++..|+.+++..+.+++++|
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~-------kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKL-------KGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHR 396 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccC-------CCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcccc
Confidence 4468899999999988654433321 113478999999999999999999999999999999999888765
Q ss_pred ------------HHHHhc-CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCC
Q 009640 272 ------------ALLLQT-TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGE 338 (530)
Q Consensus 272 ------------~l~~~~-~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (530)
+-+.++ ...-+++|||||.+..
T Consensus 397 RTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~s--------------------------------------------- 431 (782)
T COG0466 397 RTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGS--------------------------------------------- 431 (782)
T ss_pred ccccccCChHHHHHHHHhCCcCCeEEeechhhccC---------------------------------------------
Confidence 223333 4566889999999721
Q ss_pred cchhhhHHHHhhhccCCccC-----------CCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhh
Q 009640 339 ESGRVTLSGLLNFTDGLWSC-----------CSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYL 407 (530)
Q Consensus 339 ~~~~~~ls~LLn~lDgl~s~-----------~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l 407 (530)
+....--|.||..+|-=.+. .-..+++|+|+|..+.++.+|+. ||.. |+++-.+.++...|+++||
T Consensus 432 s~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlD--RMEi-I~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 432 SFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLD--RMEV-IRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred CCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhc--ceee-eeecCCChHHHHHHHHHhc
Confidence 00111235667666622111 12458999999999999999999 9965 9999999999999999998
Q ss_pred C
Q 009640 408 G 408 (530)
Q Consensus 408 ~ 408 (530)
=
T Consensus 509 i 509 (782)
T COG0466 509 I 509 (782)
T ss_pred c
Confidence 4
No 61
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.66 E-value=1.5e-15 Score=155.23 Aligned_cols=195 Identities=19% Similarity=0.252 Sum_probs=129.6
Q ss_pred CCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccCCh
Q 009640 188 RHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVTDN 267 (530)
Q Consensus 188 ~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~~~ 267 (530)
-+|.++++++|++++.-. -.-+...+.... -..++|||||||||||||+.||+.++.+|+.++... .+-
T Consensus 18 mRP~~lde~vGQ~HLlg~-~~~lrr~v~~~~---------l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~-~gv 86 (436)
T COG2256 18 LRPKSLDEVVGQEHLLGE-GKPLRRAVEAGH---------LHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT-SGV 86 (436)
T ss_pred hCCCCHHHhcChHhhhCC-CchHHHHHhcCC---------CceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc-ccH
Confidence 478999999999886422 111222232222 357999999999999999999999999999998765 356
Q ss_pred HHHHHHHHhc------CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcch
Q 009640 268 SELRALLLQT------TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESG 341 (530)
Q Consensus 268 ~~L~~l~~~~------~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (530)
.+++.++.++ ..+.|||||||+.+-
T Consensus 87 kdlr~i~e~a~~~~~~gr~tiLflDEIHRfn------------------------------------------------- 117 (436)
T COG2256 87 KDLREIIEEARKNRLLGRRTILFLDEIHRFN------------------------------------------------- 117 (436)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEehhhhcC-------------------------------------------------
Confidence 7889888876 357999999999972
Q ss_pred hhhHHHHhhhccCCccCCCCCeEEEEE-e-CCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCccchHHHH
Q 009640 342 RVTLSGLLNFTDGLWSCCSEEKIIVFT-T-NHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHHALFDVV 419 (530)
Q Consensus 342 ~~~ls~LLn~lDgl~s~~~~~~ivI~T-T-N~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~i 419 (530)
+.....||-.++ .+.+++|++ | |..-.|.+||++ |. +..++...+.+..+.++++-+..+... +.
T Consensus 118 K~QQD~lLp~vE------~G~iilIGATTENPsF~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~~~~~rg-l~--- 184 (436)
T COG2256 118 KAQQDALLPHVE------NGTIILIGATTENPSFELNPALLS--RA-RVFELKPLSSEDIKKLLKRALLDEERG-LG--- 184 (436)
T ss_pred hhhhhhhhhhhc------CCeEEEEeccCCCCCeeecHHHhh--hh-heeeeecCCHHHHHHHHHHHHhhhhcC-CC---
Confidence 111234666665 355777774 4 455689999998 54 347888999999999888744322211 00
Q ss_pred HHHHHhCCCCCHHHHHHHHHHhccCHHHHHHHHHHHHHHh
Q 009640 420 ESCIRAGGALTPAQIGEVLLRNRGNVDLAMKEVVSAMQAK 459 (530)
Q Consensus 420 ~~l~~~~~~~spadi~~~l~~~~~d~~~al~~l~~~l~~~ 459 (530)
.....+++.-+..++..+.+|.+.+|..+.......
T Consensus 185 ----~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~ 220 (436)
T COG2256 185 ----GQIIVLDEEALDYLVRLSNGDARRALNLLELAALSA 220 (436)
T ss_pred ----cccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhc
Confidence 001123444444444455567777776665554433
No 62
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.65 E-value=1e-14 Score=142.15 Aligned_cols=199 Identities=19% Similarity=0.262 Sum_probs=153.1
Q ss_pred CccccCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEE
Q 009640 181 GWVSVPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVY 257 (530)
Q Consensus 181 ~w~~~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~ 257 (530)
....+....+..+++|.|.+.+|+.|.+....|+.... ...+||||++||||||+++|+.+++ |+.++
T Consensus 14 ~l~~i~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~p---------annvLL~G~rGtGKSSlVkall~~y~~~GLRlI 84 (249)
T PF05673_consen 14 YLEPIKHPDPIRLDDLIGIERQKEALIENTEQFLQGLP---------ANNVLLWGARGTGKSSLVKALLNEYADQGLRLI 84 (249)
T ss_pred cEEecCCCCCCCHHHhcCHHHHHHHHHHHHHHHHcCCC---------CcceEEecCCCCCHHHHHHHHHHHHhhcCceEE
Confidence 46678888999999999999999999999999998643 4789999999999999999999987 77788
Q ss_pred EEecCccCChHHHHHHHHhcCCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCC
Q 009640 258 DLELTKVTDNSELRALLLQTTNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNG 337 (530)
Q Consensus 258 ~l~l~~~~~~~~L~~l~~~~~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 337 (530)
.+.-..+.+-..|...+...+.+-|||+||+. |+ .
T Consensus 85 ev~k~~L~~l~~l~~~l~~~~~kFIlf~DDLs--Fe-------------------------------------------~ 119 (249)
T PF05673_consen 85 EVSKEDLGDLPELLDLLRDRPYKFILFCDDLS--FE-------------------------------------------E 119 (249)
T ss_pred EECHHHhccHHHHHHHHhcCCCCEEEEecCCC--CC-------------------------------------------C
Confidence 88877777888888888888899999999865 31 0
Q ss_pred CcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCCh-----------------------hhhcCCceeEEEEeCCC
Q 009640 338 EESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDP-----------------------ALIRCGRMDVHVSLGTC 394 (530)
Q Consensus 338 ~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDp-----------------------ALlRpGR~d~~I~~~~p 394 (530)
.......|-..|||--...+++++|.+|+|+-.-+++ +|-. ||...|.|..|
T Consensus 120 ---~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsD--RFGL~l~F~~~ 194 (249)
T PF05673_consen 120 ---GDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSD--RFGLWLSFYPP 194 (249)
T ss_pred ---CcHHHHHHHHHhcCccccCCCcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHH--hCCcEEEecCC
Confidence 1123467778888876666889999999998654433 3334 99999999999
Q ss_pred CHHHHHHHHHHhhCCcCcc----chHHHHHHHHHhCCCCCHHHHHHHH
Q 009640 395 GPHAFKVLAKNYLGIESHH----ALFDVVESCIRAGGALTPAQIGEVL 438 (530)
Q Consensus 395 ~~~~r~~i~~~~l~~~~~~----~~~~~i~~l~~~~~~~spadi~~~l 438 (530)
+.++..+|+++|+...... .+.......+..-.+.||.--.+++
T Consensus 195 ~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg~RSGRtA~QF~ 242 (249)
T PF05673_consen 195 DQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRGGRSGRTARQFI 242 (249)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 9999999999999543332 1223334444444566665444443
No 63
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=3.1e-15 Score=163.43 Aligned_cols=156 Identities=17% Similarity=0.280 Sum_probs=119.5
Q ss_pred CCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCC-----------
Q 009640 186 PFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCY----------- 254 (530)
Q Consensus 186 ~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~----------- 254 (530)
..++|.+|++|+|++.+++.|...+. .. ..+..|||+||||||||++|+++|+.++.
T Consensus 7 rKyRPktFddVIGQe~vv~~L~~aI~----~g--------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~ 74 (702)
T PRK14960 7 RKYRPRNFNELVGQNHVSRALSSALE----RG--------RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEV 74 (702)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHH----cC--------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCcc
Confidence 34689999999999998887776553 11 11368999999999999999999999865
Q ss_pred -------------cEEEEecCccCChHHHHHHHHhc------CCCeEEEEcCccchhhhhhhhhhcccCCccccccccch
Q 009640 255 -------------DVYDLELTKVTDNSELRALLLQT------TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSS 315 (530)
Q Consensus 255 -------------~i~~l~l~~~~~~~~L~~l~~~~------~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~ 315 (530)
+++.++.++-.+-.+++.++... .+..|+||||+|.+-
T Consensus 75 C~sC~~I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS----------------------- 131 (702)
T PRK14960 75 CATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS----------------------- 131 (702)
T ss_pred CHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcC-----------------------
Confidence 56666665444556778777654 245799999999871
Q ss_pred hhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCC
Q 009640 316 SIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCG 395 (530)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~ 395 (530)
....+.||..|+.. .+.+.+|++|+.+.++.+.+++ |+ .++.|..++
T Consensus 132 --------------------------~~A~NALLKtLEEP----P~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs 178 (702)
T PRK14960 132 --------------------------THSFNALLKTLEEP----PEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLA 178 (702)
T ss_pred --------------------------HHHHHHHHHHHhcC----CCCcEEEEEECChHhhhHHHHH--hh-heeeccCCC
Confidence 22456788888753 3557888889999999999887 76 568999999
Q ss_pred HHHHHHHHHHhhCC
Q 009640 396 PHAFKVLAKNYLGI 409 (530)
Q Consensus 396 ~~~r~~i~~~~l~~ 409 (530)
.++....++..+..
T Consensus 179 ~eEI~k~L~~Il~k 192 (702)
T PRK14960 179 VDEITKHLGAILEK 192 (702)
T ss_pred HHHHHHHHHHHHHH
Confidence 99988888777654
No 64
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=6.5e-15 Score=154.58 Aligned_cols=155 Identities=17% Similarity=0.274 Sum_probs=113.7
Q ss_pred CCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCC------------
Q 009640 187 FRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCY------------ 254 (530)
Q Consensus 187 ~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~------------ 254 (530)
.++|.+|++++|++++++.+...+. .. ..+..|||+||||||||++|+++|+.+..
T Consensus 9 kyrP~~~~~iiGq~~~~~~l~~~~~----~~--------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c 76 (363)
T PRK14961 9 KWRPQYFRDIIGQKHIVTAISNGLS----LG--------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKC 76 (363)
T ss_pred HhCCCchhhccChHHHHHHHHHHHH----cC--------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 4588999999999998887665442 11 12457999999999999999999998852
Q ss_pred ------------cEEEEecCccCChHHHHHHHHhc------CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchh
Q 009640 255 ------------DVYDLELTKVTDNSELRALLLQT------TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSS 316 (530)
Q Consensus 255 ------------~i~~l~l~~~~~~~~L~~l~~~~------~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~ 316 (530)
+++.++..+-..-..++.++... ....|+||||+|.+-
T Consensus 77 ~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~------------------------ 132 (363)
T PRK14961 77 IICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS------------------------ 132 (363)
T ss_pred HHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC------------------------
Confidence 44555443323345566666543 235699999999871
Q ss_pred hhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCH
Q 009640 317 IKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGP 396 (530)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~ 396 (530)
....+.||..++.. .....+|++|+.++.+.+++.+ |+ ..++|+.++.
T Consensus 133 -------------------------~~a~naLLk~lEe~----~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~ 180 (363)
T PRK14961 133 -------------------------RHSFNALLKTLEEP----PQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISE 180 (363)
T ss_pred -------------------------HHHHHHHHHHHhcC----CCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCH
Confidence 12345688887743 3456788888889999999987 66 5689999999
Q ss_pred HHHHHHHHHhhCC
Q 009640 397 HAFKVLAKNYLGI 409 (530)
Q Consensus 397 ~~r~~i~~~~l~~ 409 (530)
++...++...+..
T Consensus 181 ~el~~~L~~~~~~ 193 (363)
T PRK14961 181 EKIFNFLKYILIK 193 (363)
T ss_pred HHHHHHHHHHHHH
Confidence 9999888776544
No 65
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.64 E-value=4.4e-15 Score=158.49 Aligned_cols=152 Identities=21% Similarity=0.303 Sum_probs=112.3
Q ss_pred cCCCCCCCcccccCChhhhHH---HHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEec
Q 009640 185 VPFRHPSTFETLALEPQLKKQ---ITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLEL 261 (530)
Q Consensus 185 ~~~~~~~~f~~l~~~~~~k~~---i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l 261 (530)
....+|.+|++++|++++... +...+ .... ..++|||||||||||++|+++|+.++.+++.++.
T Consensus 3 a~~~RP~~l~d~vGq~~~v~~~~~L~~~i----~~~~---------~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a 69 (413)
T PRK13342 3 AERMRPKTLDEVVGQEHLLGPGKPLRRMI----EAGR---------LSSMILWGPPGTGKTTLARIIAGATDAPFEALSA 69 (413)
T ss_pred hhhhCCCCHHHhcCcHHHhCcchHHHHHH----HcCC---------CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEec
Confidence 345688999999999887544 44433 2221 3489999999999999999999999999999987
Q ss_pred CccCChHHHHHHHHhc------CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCC
Q 009640 262 TKVTDNSELRALLLQT------TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNN 335 (530)
Q Consensus 262 ~~~~~~~~L~~l~~~~------~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 335 (530)
... +...++.++..+ ..+.||||||||.+.
T Consensus 70 ~~~-~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~------------------------------------------- 105 (413)
T PRK13342 70 VTS-GVKDLREVIEEARQRRSAGRRTILFIDEIHRFN------------------------------------------- 105 (413)
T ss_pred ccc-cHHHHHHHHHHHHHhhhcCCceEEEEechhhhC-------------------------------------------
Confidence 643 345566666554 267899999999872
Q ss_pred CCCcchhhhHHHHhhhccCCccCCCCCeEEEEEe--CCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhC
Q 009640 336 NGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTT--NHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLG 408 (530)
Q Consensus 336 ~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TT--N~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~ 408 (530)
......|+..++. ..+++|++| |....++++|++ |+ ..+.|+.++.++...+++..+.
T Consensus 106 ------~~~q~~LL~~le~------~~iilI~att~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~ 165 (413)
T PRK13342 106 ------KAQQDALLPHVED------GTITLIGATTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALE 165 (413)
T ss_pred ------HHHHHHHHHHhhc------CcEEEEEeCCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHH
Confidence 1123456666652 345666654 345689999999 87 6789999999999999988764
No 66
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.63 E-value=1.1e-14 Score=157.81 Aligned_cols=157 Identities=19% Similarity=0.285 Sum_probs=118.7
Q ss_pred cCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCC----------
Q 009640 185 VPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCY---------- 254 (530)
Q Consensus 185 ~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~---------- 254 (530)
...++|.+|++++|++.+.+.+...+. .+ ..+.+|||+||||||||++|+++|+.++.
T Consensus 12 a~kyRP~~f~dliGq~~vv~~L~~ai~---~~---------ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~ 79 (507)
T PRK06645 12 ARKYRPSNFAELQGQEVLVKVLSYTIL---ND---------RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTI 79 (507)
T ss_pred hhhhCCCCHHHhcCcHHHHHHHHHHHH---cC---------CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCc
Confidence 456799999999999998776655332 11 11458999999999999999999999854
Q ss_pred ------------------cEEEEecCccCChHHHHHHHHhc------CCCeEEEEcCccchhhhhhhhhhcccCCccccc
Q 009640 255 ------------------DVYDLELTKVTDNSELRALLLQT------TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAK 310 (530)
Q Consensus 255 ------------------~i~~l~l~~~~~~~~L~~l~~~~------~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~ 310 (530)
+++.++..+-.+-.+++.++..+ ....|+||||+|.+-
T Consensus 80 ~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls------------------ 141 (507)
T PRK06645 80 KTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS------------------ 141 (507)
T ss_pred CCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC------------------
Confidence 44445544434556788877655 245799999999871
Q ss_pred cccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEE
Q 009640 311 TKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVS 390 (530)
Q Consensus 311 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~ 390 (530)
....+.||..|+.. ....++|++|+.++++++++++ |+ ..++
T Consensus 142 -------------------------------~~a~naLLk~LEep----p~~~vfI~aTte~~kI~~tI~S--Rc-~~~e 183 (507)
T PRK06645 142 -------------------------------KGAFNALLKTLEEP----PPHIIFIFATTEVQKIPATIIS--RC-QRYD 183 (507)
T ss_pred -------------------------------HHHHHHHHHHHhhc----CCCEEEEEEeCChHHhhHHHHh--cc-eEEE
Confidence 22456788888742 4567888889999999999998 66 5688
Q ss_pred eCCCCHHHHHHHHHHhhCC
Q 009640 391 LGTCGPHAFKVLAKNYLGI 409 (530)
Q Consensus 391 ~~~p~~~~r~~i~~~~l~~ 409 (530)
|..++.++...+++..+..
T Consensus 184 f~~ls~~el~~~L~~i~~~ 202 (507)
T PRK06645 184 LRRLSFEEIFKLLEYITKQ 202 (507)
T ss_pred ccCCCHHHHHHHHHHHHHH
Confidence 9999999999888877754
No 67
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=1.1e-14 Score=156.64 Aligned_cols=156 Identities=16% Similarity=0.239 Sum_probs=120.5
Q ss_pred CCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc--------------
Q 009640 187 FRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL-------------- 252 (530)
Q Consensus 187 ~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l-------------- 252 (530)
.++|.+|++++|++.+.+.+...+. .. ..+.+|||+|||||||||+|+++|+.+
T Consensus 6 KyRP~~f~dliGQe~vv~~L~~a~~----~~--------ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C 73 (491)
T PRK14964 6 KYRPSSFKDLVGQDVLVRILRNAFT----LN--------KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTC 73 (491)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH----cC--------CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCcccc
Confidence 4689999999999998776654332 11 124689999999999999999999865
Q ss_pred ----------CCcEEEEecCccCChHHHHHHHHhc------CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchh
Q 009640 253 ----------CYDVYDLELTKVTDNSELRALLLQT------TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSS 316 (530)
Q Consensus 253 ----------~~~i~~l~l~~~~~~~~L~~l~~~~------~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~ 316 (530)
..+++.++.++-.+-.+++.++... ...-|+||||+|.+-
T Consensus 74 ~~C~~i~~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls------------------------ 129 (491)
T PRK14964 74 HNCISIKNSNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS------------------------ 129 (491)
T ss_pred HHHHHHhccCCCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCC------------------------
Confidence 2467778777666667788887654 245699999999871
Q ss_pred hhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCH
Q 009640 317 IKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGP 396 (530)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~ 396 (530)
....+.||..|+.. .+..++|++|+.+++|.+.+++ |+ ..++|..++.
T Consensus 130 -------------------------~~A~NaLLK~LEeP----p~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~ 177 (491)
T PRK14964 130 -------------------------NSAFNALLKTLEEP----APHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPT 177 (491)
T ss_pred -------------------------HHHHHHHHHHHhCC----CCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccH
Confidence 22467899998854 3568889999999999999998 66 5589999999
Q ss_pred HHHHHHHHHhhCCc
Q 009640 397 HAFKVLAKNYLGIE 410 (530)
Q Consensus 397 ~~r~~i~~~~l~~~ 410 (530)
++....+...+..+
T Consensus 178 ~el~~~L~~ia~~E 191 (491)
T PRK14964 178 DKLVEHLVDIAKKE 191 (491)
T ss_pred HHHHHHHHHHHHHc
Confidence 99888888776543
No 68
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.62 E-value=1.3e-14 Score=160.31 Aligned_cols=154 Identities=17% Similarity=0.287 Sum_probs=117.7
Q ss_pred CCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCC------------
Q 009640 187 FRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCY------------ 254 (530)
Q Consensus 187 ~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~------------ 254 (530)
..+|.+|++|+|++.+++.|...+.. .. .+..|||+||||||||++|+++|+.++.
T Consensus 9 KyRP~~f~divGQe~vv~~L~~~l~~----~r--------l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (647)
T PRK07994 9 KWRPQTFAEVVGQEHVLTALANALDL----GR--------LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGEC 76 (647)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc----CC--------CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCC
Confidence 35889999999999988876654432 11 2457999999999999999999999865
Q ss_pred ------------cEEEEecCccCChHHHHHHHHhc------CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchh
Q 009640 255 ------------DVYDLELTKVTDNSELRALLLQT------TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSS 316 (530)
Q Consensus 255 ------------~i~~l~l~~~~~~~~L~~l~~~~------~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~ 316 (530)
+++.++..+-.+-.+++.++... ...-|+||||+|.+
T Consensus 77 ~~C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~L------------------------- 131 (647)
T PRK07994 77 DNCREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHML------------------------- 131 (647)
T ss_pred HHHHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhC-------------------------
Confidence 44555554323445677776553 24569999999987
Q ss_pred hhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCH
Q 009640 317 IKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGP 396 (530)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~ 396 (530)
+....+.||..|+.- .+.+++|++|+.+.+|.+.+++ |+ .+++|..++.
T Consensus 132 ------------------------s~~a~NALLKtLEEP----p~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~ 180 (647)
T PRK07994 132 ------------------------SRHSFNALLKTLEEP----PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDV 180 (647)
T ss_pred ------------------------CHHHHHHHHHHHHcC----CCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCH
Confidence 223577899999853 3567888889999999999998 75 8899999999
Q ss_pred HHHHHHHHHhhC
Q 009640 397 HAFKVLAKNYLG 408 (530)
Q Consensus 397 ~~r~~i~~~~l~ 408 (530)
++....+...+.
T Consensus 181 ~ei~~~L~~il~ 192 (647)
T PRK07994 181 EQIRQQLEHILQ 192 (647)
T ss_pred HHHHHHHHHHHH
Confidence 998888887764
No 69
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=9.1e-15 Score=159.13 Aligned_cols=156 Identities=15% Similarity=0.295 Sum_probs=117.1
Q ss_pred cCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCC----------
Q 009640 185 VPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCY---------- 254 (530)
Q Consensus 185 ~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~---------- 254 (530)
...++|.+|++|+|++.+++.+...+.. .. .+..||||||||||||++|+++|+.++.
T Consensus 7 ~~kyRP~~f~divGq~~v~~~L~~~~~~----~~--------l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg 74 (509)
T PRK14958 7 ARKWRPRCFQEVIGQAPVVRALSNALDQ----QY--------LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCN 74 (509)
T ss_pred HHHHCCCCHHHhcCCHHHHHHHHHHHHh----CC--------CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCC
Confidence 3456899999999999988877765532 11 1357999999999999999999999854
Q ss_pred --------------cEEEEecCccCChHHHHHHHHhc------CCCeEEEEcCccchhhhhhhhhhcccCCccccccccc
Q 009640 255 --------------DVYDLELTKVTDNSELRALLLQT------TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRS 314 (530)
Q Consensus 255 --------------~i~~l~l~~~~~~~~L~~l~~~~------~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~ 314 (530)
+++.++..+-.+-.+++.++... ....|++|||+|.+-
T Consensus 75 ~C~~C~~i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls---------------------- 132 (509)
T PRK14958 75 DCENCREIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS---------------------- 132 (509)
T ss_pred CCHHHHHHhcCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcC----------------------
Confidence 36667665545566778777653 234699999999872
Q ss_pred hhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCC
Q 009640 315 SSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTC 394 (530)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p 394 (530)
....+.||..|+.. .+.+++|++|+.+.++.+.+++ |+ ..++|..+
T Consensus 133 ---------------------------~~a~naLLk~LEep----p~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l 178 (509)
T PRK14958 133 ---------------------------GHSFNALLKTLEEP----PSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQL 178 (509)
T ss_pred ---------------------------HHHHHHHHHHHhcc----CCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCC
Confidence 22457888888854 3567888888999999999887 66 55788888
Q ss_pred CHHHHHHHHHHhhC
Q 009640 395 GPHAFKVLAKNYLG 408 (530)
Q Consensus 395 ~~~~r~~i~~~~l~ 408 (530)
+.++....++..+.
T Consensus 179 ~~~~i~~~l~~il~ 192 (509)
T PRK14958 179 PPLQIAAHCQHLLK 192 (509)
T ss_pred CHHHHHHHHHHHHH
Confidence 88877776666554
No 70
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=2.4e-14 Score=155.54 Aligned_cols=155 Identities=17% Similarity=0.326 Sum_probs=115.2
Q ss_pred CCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCC------------
Q 009640 187 FRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCY------------ 254 (530)
Q Consensus 187 ~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~------------ 254 (530)
.++|.+|++|+|++++++.|...+.. . ..+..||||||||||||++|+++|+.+..
T Consensus 7 KyRP~~~~dvvGq~~v~~~L~~~i~~----~--------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~ 74 (504)
T PRK14963 7 RARPITFDEVVGQEHVKEVLLAALRQ----G--------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECE 74 (504)
T ss_pred hhCCCCHHHhcChHHHHHHHHHHHHc----C--------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcCh
Confidence 45899999999999988777665543 1 12346899999999999999999998843
Q ss_pred -----------cEEEEecCccCChHHHHHHHHhc------CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhh
Q 009640 255 -----------DVYDLELTKVTDNSELRALLLQT------TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSI 317 (530)
Q Consensus 255 -----------~i~~l~l~~~~~~~~L~~l~~~~------~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~ 317 (530)
+++.++.....+-..++.+...+ ..+.||||||+|.+
T Consensus 75 sc~~i~~~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~l-------------------------- 128 (504)
T PRK14963 75 SCLAVRRGAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMM-------------------------- 128 (504)
T ss_pred hhHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECcccc--------------------------
Confidence 35556554333445566653322 35679999999976
Q ss_pred hhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHH
Q 009640 318 KEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPH 397 (530)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~ 397 (530)
+...++.||..|+.. ....++|++||.+..+.+++.+ |+. +++|..++.+
T Consensus 129 -----------------------s~~a~naLLk~LEep----~~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~ 178 (504)
T PRK14963 129 -----------------------SKSAFNALLKTLEEP----PEHVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEE 178 (504)
T ss_pred -----------------------CHHHHHHHHHHHHhC----CCCEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHH
Confidence 123467788888743 3567888899999999999998 664 6999999999
Q ss_pred HHHHHHHHhhCC
Q 009640 398 AFKVLAKNYLGI 409 (530)
Q Consensus 398 ~r~~i~~~~l~~ 409 (530)
+....++..+..
T Consensus 179 el~~~L~~i~~~ 190 (504)
T PRK14963 179 EIAGKLRRLLEA 190 (504)
T ss_pred HHHHHHHHHHHH
Confidence 998888876643
No 71
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.61 E-value=6.7e-15 Score=167.47 Aligned_cols=158 Identities=19% Similarity=0.229 Sum_probs=114.0
Q ss_pred CCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc----------CCcEEE
Q 009640 189 HPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL----------CYDVYD 258 (530)
Q Consensus 189 ~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l----------~~~i~~ 258 (530)
.+..++.++|.++..+.+.+.+ .++ .+.++||+||||||||++++++|..+ +..++.
T Consensus 177 r~~~l~~~igr~~ei~~~~~~L----~~~---------~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~ 243 (731)
T TIGR02639 177 KNGKIDPLIGREDELERTIQVL----CRR---------KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS 243 (731)
T ss_pred hcCCCCcccCcHHHHHHHHHHH----hcC---------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE
Confidence 5667888999887666555433 222 25689999999999999999999987 788999
Q ss_pred EecCccCC--------hHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhcccccccc
Q 009640 259 LELTKVTD--------NSELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASST 328 (530)
Q Consensus 259 l~l~~~~~--------~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 328 (530)
++++.+.. +..++++|..+ ..++||||||||.+++...
T Consensus 244 ~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~-------------------------------- 291 (731)
T TIGR02639 244 LDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGA-------------------------------- 291 (731)
T ss_pred ecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCC--------------------------------
Confidence 88766532 35788888875 4589999999999853110
Q ss_pred CCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCC-----CCChhhhcCCceeEEEEeCCCCHHHHHHHH
Q 009640 329 CGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRD-----SVDPALIRCGRMDVHVSLGTCGPHAFKVLA 403 (530)
Q Consensus 329 ~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~-----~LDpALlRpGR~d~~I~~~~p~~~~r~~i~ 403 (530)
....+....+-|+..+. .+.+.+|++||..+ .+|+||.| ||. .|+++.|+.+++..|+
T Consensus 292 --------~~~~~~~~~~~L~~~l~------~g~i~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il 354 (731)
T TIGR02639 292 --------TSGGSMDASNLLKPALS------SGKLRCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKIL 354 (731)
T ss_pred --------CCCccHHHHHHHHHHHh------CCCeEEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHH
Confidence 00001111122333332 36788999888743 57999999 997 6999999999999999
Q ss_pred HHhhC
Q 009640 404 KNYLG 408 (530)
Q Consensus 404 ~~~l~ 408 (530)
+....
T Consensus 355 ~~~~~ 359 (731)
T TIGR02639 355 KGLKE 359 (731)
T ss_pred HHHHH
Confidence 97654
No 72
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=2.2e-14 Score=160.98 Aligned_cols=155 Identities=19% Similarity=0.307 Sum_probs=114.6
Q ss_pred CCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCc-----------
Q 009640 187 FRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYD----------- 255 (530)
Q Consensus 187 ~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~----------- 255 (530)
.++|.+|++|+|++.+++.|...+. ... .+..||||||||||||++|+++|+.++..
T Consensus 9 KyRP~tFddIIGQe~Iv~~LknaI~----~~r--------l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C 76 (944)
T PRK14949 9 KWRPATFEQMVGQSHVLHALTNALT----QQR--------LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVC 76 (944)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH----hCC--------CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCc
Confidence 4588999999999998877655442 221 24578999999999999999999998653
Q ss_pred -------------EEEEecCccCChHHHHHHHHhc------CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchh
Q 009640 256 -------------VYDLELTKVTDNSELRALLLQT------TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSS 316 (530)
Q Consensus 256 -------------i~~l~l~~~~~~~~L~~l~~~~------~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~ 316 (530)
++.++..+...-..++.+.... ...-|+||||+|.+
T Consensus 77 ~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~L------------------------- 131 (944)
T PRK14949 77 SSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHML------------------------- 131 (944)
T ss_pred hHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhc-------------------------
Confidence 2333333222334566665443 23569999999987
Q ss_pred hhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCH
Q 009640 317 IKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGP 396 (530)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~ 396 (530)
+....+.||..|+.. .+.+++|++|+.+.+|.+.+++ |+ .++.|..++.
T Consensus 132 ------------------------T~eAqNALLKtLEEP----P~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~ 180 (944)
T PRK14949 132 ------------------------SRSSFNALLKTLEEP----PEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQ 180 (944)
T ss_pred ------------------------CHHHHHHHHHHHhcc----CCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCH
Confidence 233578899999853 3567788888889999999997 76 6789999999
Q ss_pred HHHHHHHHHhhCC
Q 009640 397 HAFKVLAKNYLGI 409 (530)
Q Consensus 397 ~~r~~i~~~~l~~ 409 (530)
++....++..+..
T Consensus 181 eEI~~~L~~il~~ 193 (944)
T PRK14949 181 DEIGTQLNHILTQ 193 (944)
T ss_pred HHHHHHHHHHHHH
Confidence 9988888776654
No 73
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.61 E-value=7e-15 Score=145.59 Aligned_cols=151 Identities=20% Similarity=0.271 Sum_probs=103.7
Q ss_pred cCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCC-cE-----EE
Q 009640 185 VPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCY-DV-----YD 258 (530)
Q Consensus 185 ~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~-~i-----~~ 258 (530)
...+.|.+|+++++++.+.+.+...+.. ... ..|||||||||||||.|.|+|.++.. +. .+
T Consensus 27 teKYrPkt~de~~gQe~vV~~L~~a~~~-~~l------------p~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ 93 (346)
T KOG0989|consen 27 TEKYRPKTFDELAGQEHVVQVLKNALLR-RIL------------PHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLE 93 (346)
T ss_pred HHHhCCCcHHhhcchHHHHHHHHHHHhh-cCC------------ceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhh
Confidence 6788999999999999999988887755 222 37999999999999999999999855 22 22
Q ss_pred EecCccCC----------hHHHHHHHHhc-----CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccc
Q 009640 259 LELTKVTD----------NSELRALLLQT-----TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSR 323 (530)
Q Consensus 259 l~l~~~~~----------~~~L~~l~~~~-----~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~ 323 (530)
++.+.-.+ -+.+....... +..-||+|||.|.+
T Consensus 94 lnaSderGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsm-------------------------------- 141 (346)
T KOG0989|consen 94 LNASDERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSM-------------------------------- 141 (346)
T ss_pred hcccccccccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhh--------------------------------
Confidence 23332211 12222222111 12259999999987
Q ss_pred cccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHH
Q 009640 324 IASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLA 403 (530)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~ 403 (530)
.....+.|.+.||... ....+|+.||+++.|.+.+.+ |..+ +.|+..+.+.....+
T Consensus 142 -----------------tsdaq~aLrr~mE~~s----~~trFiLIcnylsrii~pi~S--RC~K-frFk~L~d~~iv~rL 197 (346)
T KOG0989|consen 142 -----------------TSDAQAALRRTMEDFS----RTTRFILICNYLSRIIRPLVS--RCQK-FRFKKLKDEDIVDRL 197 (346)
T ss_pred -----------------hHHHHHHHHHHHhccc----cceEEEEEcCChhhCChHHHh--hHHH-hcCCCcchHHHHHHH
Confidence 2335678999998643 457899999999999999998 7654 445444443333333
Q ss_pred H
Q 009640 404 K 404 (530)
Q Consensus 404 ~ 404 (530)
+
T Consensus 198 ~ 198 (346)
T KOG0989|consen 198 E 198 (346)
T ss_pred H
Confidence 3
No 74
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=1.6e-14 Score=159.18 Aligned_cols=157 Identities=18% Similarity=0.297 Sum_probs=118.0
Q ss_pred CCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCC-----------
Q 009640 186 PFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCY----------- 254 (530)
Q Consensus 186 ~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~----------- 254 (530)
..++|.+|++|+|++.+++.|...+.. . ..+.+|||+||||||||++|+++|+.++.
T Consensus 8 rKYRP~tFddIIGQe~vv~~L~~ai~~----~--------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~ 75 (709)
T PRK08691 8 RKWRPKTFADLVGQEHVVKALQNALDE----G--------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGV 75 (709)
T ss_pred HHhCCCCHHHHcCcHHHHHHHHHHHHc----C--------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcc
Confidence 356899999999999988877776542 1 12468999999999999999999998743
Q ss_pred -------------cEEEEecCccCChHHHHHHHHhc------CCCeEEEEcCccchhhhhhhhhhcccCCccccccccch
Q 009640 255 -------------DVYDLELTKVTDNSELRALLLQT------TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSS 315 (530)
Q Consensus 255 -------------~i~~l~l~~~~~~~~L~~l~~~~------~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~ 315 (530)
+++.++..+-.+...++.++..+ ....||||||+|.+-
T Consensus 76 C~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls----------------------- 132 (709)
T PRK08691 76 CQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS----------------------- 132 (709)
T ss_pred cHHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC-----------------------
Confidence 34455544434556777777643 345799999999761
Q ss_pred hhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCC
Q 009640 316 SIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCG 395 (530)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~ 395 (530)
....+.||..|+.. .+.+++|++||.+.++.+.+++ |+ ..+.|..++
T Consensus 133 --------------------------~~A~NALLKtLEEP----p~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls 179 (709)
T PRK08691 133 --------------------------KSAFNAMLKTLEEP----PEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMT 179 (709)
T ss_pred --------------------------HHHHHHHHHHHHhC----CCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCC
Confidence 22456788888753 3557888999999999999886 77 667888999
Q ss_pred HHHHHHHHHHhhCCc
Q 009640 396 PHAFKVLAKNYLGIE 410 (530)
Q Consensus 396 ~~~r~~i~~~~l~~~ 410 (530)
.++....++..+..+
T Consensus 180 ~eeI~~~L~~Il~kE 194 (709)
T PRK08691 180 AQQVADHLAHVLDSE 194 (709)
T ss_pred HHHHHHHHHHHHHHc
Confidence 998888887776543
No 75
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.60 E-value=3.2e-14 Score=148.57 Aligned_cols=158 Identities=17% Similarity=0.313 Sum_probs=116.8
Q ss_pred cCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcC-----------
Q 009640 185 VPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLC----------- 253 (530)
Q Consensus 185 ~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~----------- 253 (530)
....+|.+|++++|++++++.+...+.. . ..+..||||||||+|||++++++|..+.
T Consensus 5 ~~~~rp~~~~~iig~~~~~~~l~~~~~~----~--------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~ 72 (355)
T TIGR02397 5 ARKYRPQTFEDVIGQEHIVQTLKNAIKN----G--------RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCN 72 (355)
T ss_pred HHHhCCCcHhhccCcHHHHHHHHHHHHc----C--------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 4556889999999999988877775532 1 1245799999999999999999999873
Q ss_pred -------------CcEEEEecCccCChHHHHHHHHhc------CCCeEEEEcCccchhhhhhhhhhcccCCccccccccc
Q 009640 254 -------------YDVYDLELTKVTDNSELRALLLQT------TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRS 314 (530)
Q Consensus 254 -------------~~i~~l~l~~~~~~~~L~~l~~~~------~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~ 314 (530)
.+++.++.....+...++.++..+ ..+.||+|||+|.+-
T Consensus 73 ~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~---------------------- 130 (355)
T TIGR02397 73 ECESCKEINSGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS---------------------- 130 (355)
T ss_pred CCHHHHHHhcCCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC----------------------
Confidence 234445444333444566676654 244699999999761
Q ss_pred hhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCC
Q 009640 315 SSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTC 394 (530)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p 394 (530)
....+.||..++.. ....++|++||.++.|.+++.+ |+ ..++|+.|
T Consensus 131 ---------------------------~~~~~~Ll~~le~~----~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~ 176 (355)
T TIGR02397 131 ---------------------------KSAFNALLKTLEEP----PEHVVFILATTEPHKIPATILS--RC-QRFDFKRI 176 (355)
T ss_pred ---------------------------HHHHHHHHHHHhCC----ccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCC
Confidence 12356788888753 3567888899999999999998 76 46899999
Q ss_pred CHHHHHHHHHHhhCCc
Q 009640 395 GPHAFKVLAKNYLGIE 410 (530)
Q Consensus 395 ~~~~r~~i~~~~l~~~ 410 (530)
+.++...++..++...
T Consensus 177 ~~~~l~~~l~~~~~~~ 192 (355)
T TIGR02397 177 PLEDIVERLKKILDKE 192 (355)
T ss_pred CHHHHHHHHHHHHHHc
Confidence 9999999988876543
No 76
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.59 E-value=5e-14 Score=155.20 Aligned_cols=156 Identities=17% Similarity=0.299 Sum_probs=118.7
Q ss_pred CCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcC-------------
Q 009640 187 FRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLC------------- 253 (530)
Q Consensus 187 ~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~------------- 253 (530)
..+|.+|++++|++++.+.+...+.. . ..+..||||||||||||++|+.+|+.++
T Consensus 9 k~rP~~f~~viGq~~v~~~L~~~i~~----~--------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C 76 (559)
T PRK05563 9 KWRPQTFEDVVGQEHITKTLKNAIKQ----G--------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNEC 76 (559)
T ss_pred HhCCCcHHhccCcHHHHHHHHHHHHc----C--------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 35899999999999988877765543 1 1246799999999999999999999874
Q ss_pred -----------CcEEEEecCccCChHHHHHHHHhc------CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchh
Q 009640 254 -----------YDVYDLELTKVTDNSELRALLLQT------TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSS 316 (530)
Q Consensus 254 -----------~~i~~l~l~~~~~~~~L~~l~~~~------~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~ 316 (530)
.+++.++..+..+-..++.+...+ ...-|++|||+|.+-
T Consensus 77 ~~C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt------------------------ 132 (559)
T PRK05563 77 EICKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS------------------------ 132 (559)
T ss_pred HHHHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC------------------------
Confidence 456666665544556677776654 235699999999872
Q ss_pred hhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCH
Q 009640 317 IKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGP 396 (530)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~ 396 (530)
....+.||..++.. ...+++|++|+.+++|++.+++ |+. .+.|..|+.
T Consensus 133 -------------------------~~a~naLLKtLEep----p~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~ 180 (559)
T PRK05563 133 -------------------------TGAFNALLKTLEEP----PAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISV 180 (559)
T ss_pred -------------------------HHHHHHHHHHhcCC----CCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCH
Confidence 12466888888754 3567888888899999999997 664 578999999
Q ss_pred HHHHHHHHHhhCCc
Q 009640 397 HAFKVLAKNYLGIE 410 (530)
Q Consensus 397 ~~r~~i~~~~l~~~ 410 (530)
++....++..+...
T Consensus 181 ~ei~~~L~~i~~~e 194 (559)
T PRK05563 181 EDIVERLKYILDKE 194 (559)
T ss_pred HHHHHHHHHHHHHc
Confidence 99888887766533
No 77
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=2.7e-14 Score=157.53 Aligned_cols=156 Identities=19% Similarity=0.297 Sum_probs=116.4
Q ss_pred CCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCC-----------
Q 009640 186 PFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCY----------- 254 (530)
Q Consensus 186 ~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~----------- 254 (530)
..++|.+|++++|++.+.+.|...+. ... .+..||||||+|||||++++++|+.+++
T Consensus 8 ~KyRP~~f~dviGQe~vv~~L~~~l~----~~r--------l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~ 75 (618)
T PRK14951 8 RKYRPRSFSEMVGQEHVVQALTNALT----QQR--------LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA 75 (618)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHH----cCC--------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC
Confidence 45689999999999988776666443 221 1357999999999999999999999864
Q ss_pred ------------------cEEEEecCccCChHHHHHHHHhc------CCCeEEEEcCccchhhhhhhhhhcccCCccccc
Q 009640 255 ------------------DVYDLELTKVTDNSELRALLLQT------TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAK 310 (530)
Q Consensus 255 ------------------~i~~l~l~~~~~~~~L~~l~~~~------~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~ 310 (530)
+++.++..+-.+-.+++.++... ...-|++|||+|.+.
T Consensus 76 ~pCg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls------------------ 137 (618)
T PRK14951 76 TPCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT------------------ 137 (618)
T ss_pred CCCCccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC------------------
Confidence 34555544334455777777654 124599999999872
Q ss_pred cccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEE
Q 009640 311 TKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVS 390 (530)
Q Consensus 311 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~ 390 (530)
....+.||..|+.. .+..++|++|+.+.++.+.+++ |+ ..++
T Consensus 138 -------------------------------~~a~NaLLKtLEEP----P~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~ 179 (618)
T PRK14951 138 -------------------------------NTAFNAMLKTLEEP----PEYLKFVLATTDPQKVPVTVLS--RC-LQFN 179 (618)
T ss_pred -------------------------------HHHHHHHHHhcccC----CCCeEEEEEECCchhhhHHHHH--hc-eeee
Confidence 22467788888753 3567888888899999999888 65 6789
Q ss_pred eCCCCHHHHHHHHHHhhCC
Q 009640 391 LGTCGPHAFKVLAKNYLGI 409 (530)
Q Consensus 391 ~~~p~~~~r~~i~~~~l~~ 409 (530)
|..++.++....++..+..
T Consensus 180 f~~Ls~eei~~~L~~i~~~ 198 (618)
T PRK14951 180 LRPMAPETVLEHLTQVLAA 198 (618)
T ss_pred cCCCCHHHHHHHHHHHHHH
Confidence 9999999888888776643
No 78
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.59 E-value=4e-14 Score=149.39 Aligned_cols=156 Identities=22% Similarity=0.255 Sum_probs=114.5
Q ss_pred CcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCc----------------
Q 009640 192 TFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYD---------------- 255 (530)
Q Consensus 192 ~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~---------------- 255 (530)
.|++|+|++.+++.+...+..... .+...+...+.+||||||||+|||++|.++|+.+..+
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~---~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARA---DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccc---cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 579999999999998887765443 2334455567899999999999999999999977442
Q ss_pred -------EEEEecCc-cCChHHHHHHHHhc------CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhc
Q 009640 256 -------VYDLELTK-VTDNSELRALLLQT------TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMG 321 (530)
Q Consensus 256 -------i~~l~l~~-~~~~~~L~~l~~~~------~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~ 321 (530)
++.+.... ...-.+++.++..+ ....|+||||+|.+-
T Consensus 80 ~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~----------------------------- 130 (394)
T PRK07940 80 LAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLT----------------------------- 130 (394)
T ss_pred hcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcC-----------------------------
Confidence 33333221 12345677777654 234699999999872
Q ss_pred cccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHH
Q 009640 322 SRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKV 401 (530)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~ 401 (530)
....+.||..|+.- ..+.++|++|+.++.|.|++++ |+ ..|.|+.|+.++...
T Consensus 131 --------------------~~aanaLLk~LEep----~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~ 183 (394)
T PRK07940 131 --------------------ERAANALLKAVEEP----PPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAE 183 (394)
T ss_pred --------------------HHHHHHHHHHhhcC----CCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHH
Confidence 11346788888753 3456777777779999999998 76 689999999999887
Q ss_pred HHHHh
Q 009640 402 LAKNY 406 (530)
Q Consensus 402 i~~~~ 406 (530)
++...
T Consensus 184 ~L~~~ 188 (394)
T PRK07940 184 VLVRR 188 (394)
T ss_pred HHHHh
Confidence 77643
No 79
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.6e-14 Score=155.75 Aligned_cols=161 Identities=24% Similarity=0.306 Sum_probs=116.7
Q ss_pred ccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccCChHHHH--
Q 009640 194 ETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVTDNSELR-- 271 (530)
Q Consensus 194 ~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~~~~~L~-- 271 (530)
++-.|.+++|+.|++.|.--.-+ |-....-++|+||||.||||++++||..||..|+.+++..+.+.++++
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLr-------gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLR-------GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGH 483 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhc-------ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhccc
Confidence 45577889999999877532211 111223478999999999999999999999999999998887665543
Q ss_pred -------------HHHHhc-CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCC
Q 009640 272 -------------ALLLQT-TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNG 337 (530)
Q Consensus 272 -------------~l~~~~-~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 337 (530)
+-|... ...-+++|||||.+-. +
T Consensus 484 RRTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~--g----------------------------------------- 520 (906)
T KOG2004|consen 484 RRTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGS--G----------------------------------------- 520 (906)
T ss_pred ceeeeccCChHHHHHHHhhCCCCceEEeehhhhhCC--C-----------------------------------------
Confidence 334443 4566889999999820 0
Q ss_pred CcchhhhHHHHhhhccCCccC-----------CCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHh
Q 009640 338 EESGRVTLSGLLNFTDGLWSC-----------CSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNY 406 (530)
Q Consensus 338 ~~~~~~~ls~LLn~lDgl~s~-----------~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~ 406 (530)
....--+.||..||--.++ .-..+++|+|.|..+.|+|+|+. ||.+ |+++-...++...|+++|
T Consensus 521 --~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlD--RMEv-IelsGYv~eEKv~IA~~y 595 (906)
T KOG2004|consen 521 --HQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLD--RMEV-IELSGYVAEEKVKIAERY 595 (906)
T ss_pred --CCCChHHHHHHhcChhhccchhhhccccccchhheEEEEeccccccCChhhhh--hhhe-eeccCccHHHHHHHHHHh
Confidence 0011124455554421111 12568999999999999999999 9976 999999999999999999
Q ss_pred hCC
Q 009640 407 LGI 409 (530)
Q Consensus 407 l~~ 409 (530)
|-.
T Consensus 596 Lip 598 (906)
T KOG2004|consen 596 LIP 598 (906)
T ss_pred hhh
Confidence 853
No 80
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.5e-14 Score=157.93 Aligned_cols=236 Identities=21% Similarity=0.245 Sum_probs=168.1
Q ss_pred HcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCcc------CChHHHHHHHHhc--CCCeEEEE
Q 009640 214 ANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKV------TDNSELRALLLQT--TNRSIIVI 285 (530)
Q Consensus 214 l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~------~~~~~L~~l~~~~--~~~sII~I 285 (530)
+..++.+...+...++|+++|||||||||++++++|++ +.....++...+ .+...++.+|..+ ..|+|+++
T Consensus 4 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~ 82 (494)
T COG0464 4 LKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFI 82 (494)
T ss_pred ccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEee
Confidence 34667788899999999999999999999999999999 444433333322 1345567777665 67899999
Q ss_pred cCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEE
Q 009640 286 EDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKII 365 (530)
Q Consensus 286 DeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~iv 365 (530)
||+|.+.+.+.. ..........+.|+..+|++. .+. +++
T Consensus 83 d~~~~~~~~~~~--------------------------------------~~~~~~~~v~~~l~~~~d~~~--~~~-v~~ 121 (494)
T COG0464 83 DEIDALAPKRSS--------------------------------------DQGEVERRVVAQLLALMDGLK--RGQ-VIV 121 (494)
T ss_pred chhhhcccCccc--------------------------------------cccchhhHHHHHHHHhccccc--CCc-eEE
Confidence 999998532111 122345667899999999998 356 888
Q ss_pred EEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCccchHHHHHHHHHhCCCCCHHHHHHHHHHhccCH
Q 009640 366 VFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHHALFDVVESCIRAGGALTPAQIGEVLLRNRGNV 445 (530)
Q Consensus 366 I~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~i~~l~~~~~~~spadi~~~l~~~~~d~ 445 (530)
++.||.+..+|+++++|||++..+.+..|+...+..++.......... .......++..+.+++.+++..++....
T Consensus 122 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~l~~~~~--- 197 (494)
T COG0464 122 IGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEILQIHTRLMFLG-PPGTGKTLAARTVGKSGADLGALAKEAA--- 197 (494)
T ss_pred EeecCCccccChhHhCccccceeeecCCCCHHHHHHHHHHHHhcCCCc-ccccHHHHHHhcCCccHHHHHHHHHHHH---
Confidence 889999999999999999999999999999999988887766543322 1223667777789999999999986433
Q ss_pred HHHHHHHH-HHHHHhhhccccccccccccccCCCCcccccCCCCcccCCCCCC
Q 009640 446 DLAMKEVV-SAMQAKILSGREVMECDELVITRSPESVVVVRSPENWDSSPGGK 497 (530)
Q Consensus 446 ~~al~~l~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~g~~ 497 (530)
..++.... ........+..++..+...+.+. ..+....+.+.|.+++|..
T Consensus 198 ~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~v~~~diggl~ 248 (494)
T COG0464 198 LRELRRAIDLVGEYIGVTEDDFEEALKKVLPS--RGVLFEDEDVTLDDIGGLE 248 (494)
T ss_pred HHHHHhhhccCcccccccHHHHHHHHHhcCcc--cccccCCCCcceehhhcHH
Confidence 22222221 11222233334444444444333 4667788889999998854
No 81
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=2.7e-14 Score=156.31 Aligned_cols=154 Identities=18% Similarity=0.322 Sum_probs=115.9
Q ss_pred CCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCC------------
Q 009640 187 FRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCY------------ 254 (530)
Q Consensus 187 ~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~------------ 254 (530)
..+|.+|++|+|++.+++.+...+.. .. .+..||||||||||||++|+++|+.++.
T Consensus 9 k~rP~~f~divGq~~v~~~L~~~i~~----~~--------~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C 76 (527)
T PRK14969 9 KWRPKSFSELVGQEHVVRALTNALEQ----QR--------LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVC 76 (527)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHHc----CC--------CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 34789999999999988877665532 11 1357999999999999999999999854
Q ss_pred ------------cEEEEecCccCChHHHHHHHHhc------CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchh
Q 009640 255 ------------DVYDLELTKVTDNSELRALLLQT------TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSS 316 (530)
Q Consensus 255 ------------~i~~l~l~~~~~~~~L~~l~~~~------~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~ 316 (530)
+++.++...-..-.+++.++..+ ....|+||||+|.+-
T Consensus 77 ~~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls------------------------ 132 (527)
T PRK14969 77 SACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS------------------------ 132 (527)
T ss_pred HHHHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC------------------------
Confidence 45555544334456677776654 235699999999871
Q ss_pred hhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCH
Q 009640 317 IKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGP 396 (530)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~ 396 (530)
....+.||..|+.. .+..++|++|+.++++.+.+++ |+ ..++|..++.
T Consensus 133 -------------------------~~a~naLLK~LEep----p~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~ 180 (527)
T PRK14969 133 -------------------------KSAFNAMLKTLEEP----PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPP 180 (527)
T ss_pred -------------------------HHHHHHHHHHHhCC----CCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCH
Confidence 22456899988863 3567888888889999988887 65 6689999999
Q ss_pred HHHHHHHHHhhC
Q 009640 397 HAFKVLAKNYLG 408 (530)
Q Consensus 397 ~~r~~i~~~~l~ 408 (530)
++....+...+.
T Consensus 181 ~~i~~~L~~il~ 192 (527)
T PRK14969 181 PLIVSHLQHILE 192 (527)
T ss_pred HHHHHHHHHHHH
Confidence 988887777664
No 82
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=5.2e-14 Score=153.41 Aligned_cols=155 Identities=17% Similarity=0.275 Sum_probs=114.0
Q ss_pred CCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCC-----------
Q 009640 186 PFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCY----------- 254 (530)
Q Consensus 186 ~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~----------- 254 (530)
...+|.+|++++|++.+++.+...+. ... .+..||||||||||||++|+++|+.+..
T Consensus 8 ~KyRP~~f~diiGq~~~v~~L~~~i~----~~r--------l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~ 75 (546)
T PRK14957 8 RKYRPQSFAEVAGQQHALNSLVHALE----TQK--------VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNK 75 (546)
T ss_pred HHHCcCcHHHhcCcHHHHHHHHHHHH----cCC--------CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcc
Confidence 34588999999999998887665443 111 1357999999999999999999998853
Q ss_pred -------------cEEEEecCccCChHHHHHHHHhc------CCCeEEEEcCccchhhhhhhhhhcccCCccccccccch
Q 009640 255 -------------DVYDLELTKVTDNSELRALLLQT------TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSS 315 (530)
Q Consensus 255 -------------~i~~l~l~~~~~~~~L~~l~~~~------~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~ 315 (530)
+++.++...-.+-.+++.++... ...-|+||||+|.+-
T Consensus 76 C~sC~~i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls----------------------- 132 (546)
T PRK14957 76 CENCVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLS----------------------- 132 (546)
T ss_pred cHHHHHHhcCCCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhcc-----------------------
Confidence 55556553333445566665443 346799999999871
Q ss_pred hhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCC
Q 009640 316 SIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCG 395 (530)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~ 395 (530)
....+.||..|+.. .+.+++|++|+.+..+.+++++ |+ ..++|..++
T Consensus 133 --------------------------~~a~naLLK~LEep----p~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls 179 (546)
T PRK14957 133 --------------------------KQSFNALLKTLEEP----PEYVKFILATTDYHKIPVTILS--RC-IQLHLKHIS 179 (546)
T ss_pred --------------------------HHHHHHHHHHHhcC----CCCceEEEEECChhhhhhhHHH--he-eeEEeCCCC
Confidence 22456889888853 3567788888889999989887 66 679999999
Q ss_pred HHHHHHHHHHhhC
Q 009640 396 PHAFKVLAKNYLG 408 (530)
Q Consensus 396 ~~~r~~i~~~~l~ 408 (530)
.++....++..+.
T Consensus 180 ~~eI~~~L~~il~ 192 (546)
T PRK14957 180 QADIKDQLKIILA 192 (546)
T ss_pred HHHHHHHHHHHHH
Confidence 9988877776554
No 83
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=5.1e-14 Score=154.78 Aligned_cols=157 Identities=21% Similarity=0.347 Sum_probs=116.6
Q ss_pred CCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCC-----------
Q 009640 186 PFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCY----------- 254 (530)
Q Consensus 186 ~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~----------- 254 (530)
..++|.+|++|+|++.+++.|...+. ... .+..|||||||||||||+|+++|+.++.
T Consensus 5 ~kyRP~~f~eivGq~~i~~~L~~~i~----~~r--------~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~ 72 (584)
T PRK14952 5 RKYRPATFAEVVGQEHVTEPLSSALD----AGR--------INHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGV 72 (584)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHH----cCC--------CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccc
Confidence 34689999999999998877666543 211 2346999999999999999999998752
Q ss_pred ---------------cEEEEecCccCChHHHHHHHHhc------CCCeEEEEcCccchhhhhhhhhhcccCCcccccccc
Q 009640 255 ---------------DVYDLELTKVTDNSELRALLLQT------TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKR 313 (530)
Q Consensus 255 ---------------~i~~l~l~~~~~~~~L~~l~~~~------~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r 313 (530)
+++.++..+..+-.+++.+.... ...-|+||||+|.+-
T Consensus 73 C~~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt--------------------- 131 (584)
T PRK14952 73 CESCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT--------------------- 131 (584)
T ss_pred cHHHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC---------------------
Confidence 34555544433455666654432 345699999999871
Q ss_pred chhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCC
Q 009640 314 SSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGT 393 (530)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~ 393 (530)
....+.||..|+.. .+.+++|++|+.+++|.+++++ |. .+++|..
T Consensus 132 ----------------------------~~A~NALLK~LEEp----p~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~ 176 (584)
T PRK14952 132 ----------------------------TAGFNALLKIVEEP----PEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRL 176 (584)
T ss_pred ----------------------------HHHHHHHHHHHhcC----CCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeC
Confidence 12467889988853 4578899999999999999998 64 6799999
Q ss_pred CCHHHHHHHHHHhhCCc
Q 009640 394 CGPHAFKVLAKNYLGIE 410 (530)
Q Consensus 394 p~~~~r~~i~~~~l~~~ 410 (530)
++.++....+..++...
T Consensus 177 l~~~~i~~~L~~i~~~e 193 (584)
T PRK14952 177 LPPRTMRALIARICEQE 193 (584)
T ss_pred CCHHHHHHHHHHHHHHc
Confidence 99998888887766543
No 84
>PRK06893 DNA replication initiation factor; Validated
Probab=99.57 E-value=5.6e-14 Score=138.29 Aligned_cols=162 Identities=14% Similarity=0.185 Sum_probs=102.7
Q ss_pred cCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEec
Q 009640 185 VPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLEL 261 (530)
Q Consensus 185 ~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l 261 (530)
+...++.+|+++++.+... ....+..- +. ....+.++||||||||||+|+.|+|+++ +..+..+++
T Consensus 7 ~~~~~~~~fd~f~~~~~~~--~~~~~~~~------~~---~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~ 75 (229)
T PRK06893 7 IHQIDDETLDNFYADNNLL--LLDSLRKN------FI---DLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPL 75 (229)
T ss_pred CCCCCcccccccccCChHH--HHHHHHHH------hh---ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeH
Confidence 4556788999998766431 22222111 11 1112457999999999999999999987 345555555
Q ss_pred CccCChHHHHHHHHhcCCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcch
Q 009640 262 TKVTDNSELRALLLQTTNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESG 341 (530)
Q Consensus 262 ~~~~~~~~L~~l~~~~~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (530)
.... ....+++....+..+|+|||||.+.+ ....
T Consensus 76 ~~~~--~~~~~~~~~~~~~dlLilDDi~~~~~--------------------------------------------~~~~ 109 (229)
T PRK06893 76 SKSQ--YFSPAVLENLEQQDLVCLDDLQAVIG--------------------------------------------NEEW 109 (229)
T ss_pred HHhh--hhhHHHHhhcccCCEEEEeChhhhcC--------------------------------------------ChHH
Confidence 4221 11234555566778999999998621 1112
Q ss_pred hhhHHHHhhhccCCccCCCCCeEEEEEeC-CCCCCC---hhhhcCCceeEEEEeCCCCHHHHHHHHHHhhC
Q 009640 342 RVTLSGLLNFTDGLWSCCSEEKIIVFTTN-HRDSVD---PALIRCGRMDVHVSLGTCGPHAFKVLAKNYLG 408 (530)
Q Consensus 342 ~~~ls~LLn~lDgl~s~~~~~~ivI~TTN-~~~~LD---pALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~ 408 (530)
...+-.++|.+ .. .+..++|+|+| .|..++ |.|.++.+.+..+.++.|+.+.+..|++....
T Consensus 110 ~~~l~~l~n~~---~~--~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~ 175 (229)
T PRK06893 110 ELAIFDLFNRI---KE--QGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAY 175 (229)
T ss_pred HHHHHHHHHHH---HH--cCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHH
Confidence 22344444433 22 23445555555 566654 89998556678899999999999999987653
No 85
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.57 E-value=5.8e-14 Score=159.75 Aligned_cols=201 Identities=18% Similarity=0.267 Sum_probs=138.2
Q ss_pred CCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCC-----------
Q 009640 186 PFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCY----------- 254 (530)
Q Consensus 186 ~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~----------- 254 (530)
..++|.+|++|+|++.+++.|...+.. .. ....||||||+|||||++++++|+.|++
T Consensus 7 ~KyRP~~f~eiiGqe~v~~~L~~~i~~----~r--------i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~ 74 (824)
T PRK07764 7 RRYRPATFAEVIGQEHVTEPLSTALDS----GR--------INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGE 74 (824)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHh----CC--------CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcc
Confidence 457899999999999988876665532 11 1357999999999999999999999853
Q ss_pred ---------------cEEEEecCccCChHHHHHHHHhc------CCCeEEEEcCccchhhhhhhhhhcccCCcccccccc
Q 009640 255 ---------------DVYDLELTKVTDNSELRALLLQT------TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKR 313 (530)
Q Consensus 255 ---------------~i~~l~l~~~~~~~~L~~l~~~~------~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r 313 (530)
+++.++..+..+-.+++.+.... ...-|+||||+|.+-
T Consensus 75 C~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt--------------------- 133 (824)
T PRK07764 75 CDSCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVT--------------------- 133 (824)
T ss_pred cHHHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcC---------------------
Confidence 34555443333445666654332 356799999999871
Q ss_pred chhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCC
Q 009640 314 SSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGT 393 (530)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~ 393 (530)
....+.||+.|+.. ....+|||+|+.+++|-+.|++ |+ .+|.|..
T Consensus 134 ----------------------------~~a~NaLLK~LEEp----P~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~ 178 (824)
T PRK07764 134 ----------------------------PQGFNALLKIVEEP----PEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRL 178 (824)
T ss_pred ----------------------------HHHHHHHHHHHhCC----CCCeEEEEEeCChhhhhHHHHh--he-eEEEeeC
Confidence 22456899999864 3568899999999999999988 65 6789999
Q ss_pred CCHHHHHHHHHHhhCCcCcc------------------chHHHHHHHHHh--CCCCCHHHHHHHHHHhccCHHHHHHHHH
Q 009640 394 CGPHAFKVLAKNYLGIESHH------------------ALFDVVESCIRA--GGALTPAQIGEVLLRNRGNVDLAMKEVV 453 (530)
Q Consensus 394 p~~~~r~~i~~~~l~~~~~~------------------~~~~~i~~l~~~--~~~~spadi~~~l~~~~~d~~~al~~l~ 453 (530)
++.+....++...+..+... .....+++|+.. ...+|..++..++-... ...+..++
T Consensus 179 l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgGdlR~Al~eLEKLia~~~~~~IT~e~V~allg~~~---~~~I~~li 255 (824)
T PRK07764 179 VPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRDSLSVLDQLLAGAGPEGVTYERAVALLGVTD---SALIDEAV 255 (824)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHhcCCC---HHHHHHHH
Confidence 99999888888776432211 112233444321 24566777777664332 45566666
Q ss_pred HHHH
Q 009640 454 SAMQ 457 (530)
Q Consensus 454 ~~l~ 457 (530)
+++.
T Consensus 256 dAL~ 259 (824)
T PRK07764 256 DALA 259 (824)
T ss_pred HHHH
Confidence 6665
No 86
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.57 E-value=3.4e-14 Score=161.54 Aligned_cols=158 Identities=22% Similarity=0.221 Sum_probs=115.9
Q ss_pred cccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccCChHHH----
Q 009640 195 TLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVTDNSEL---- 270 (530)
Q Consensus 195 ~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~~~~~L---- 270 (530)
+..|.+++|+.|.+.+........ .....++|+||||||||++++++|+.++.+++.++++.+.+..++
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~~-------~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVNK-------IKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhccc-------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccch
Confidence 378899999999987775443211 123468999999999999999999999999999998877554443
Q ss_pred -----------HHHHHhc-CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCC
Q 009640 271 -----------RALLLQT-TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGE 338 (530)
Q Consensus 271 -----------~~l~~~~-~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (530)
.+.+..+ ....||+|||||.+..
T Consensus 396 ~~~~g~~~G~~~~~l~~~~~~~~villDEidk~~~--------------------------------------------- 430 (784)
T PRK10787 396 RTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSS--------------------------------------------- 430 (784)
T ss_pred hccCCCCCcHHHHHHHhcCCCCCEEEEEChhhccc---------------------------------------------
Confidence 2233333 2445899999998721
Q ss_pred cchhhhHHHHhhhccCCc----c-------CCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhh
Q 009640 339 ESGRVTLSGLLNFTDGLW----S-------CCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYL 407 (530)
Q Consensus 339 ~~~~~~ls~LLn~lDgl~----s-------~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l 407 (530)
.......+.||..+|--. . ..-+++++|+|||.. .|+|||+. ||+ .|.++.++.++...|+++||
T Consensus 431 ~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 431 DMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred ccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhh
Confidence 001123567777776310 0 012568999999987 59999999 996 58999999999999999998
Q ss_pred C
Q 009640 408 G 408 (530)
Q Consensus 408 ~ 408 (530)
.
T Consensus 507 ~ 507 (784)
T PRK10787 507 L 507 (784)
T ss_pred h
Confidence 4
No 87
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=1.3e-13 Score=144.90 Aligned_cols=156 Identities=14% Similarity=0.288 Sum_probs=113.2
Q ss_pred cCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCC----------
Q 009640 185 VPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCY---------- 254 (530)
Q Consensus 185 ~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~---------- 254 (530)
...++|.+|++++|++.+.+.+...+.. . ..+.+||||||||+|||++++++|+.+..
T Consensus 8 ~~k~rP~~~~~iig~~~~~~~l~~~i~~----~--------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~ 75 (367)
T PRK14970 8 ARKYRPQTFDDVVGQSHITNTLLNAIEN----N--------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDF 75 (367)
T ss_pred HHHHCCCcHHhcCCcHHHHHHHHHHHHc----C--------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 4456899999999999987766665532 1 12468999999999999999999998743
Q ss_pred --cEEEEecCccCChHHHHHHHHhc------CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhcccccc
Q 009640 255 --DVYDLELTKVTDNSELRALLLQT------TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIAS 326 (530)
Q Consensus 255 --~i~~l~l~~~~~~~~L~~l~~~~------~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 326 (530)
++++++.....+...++.++..+ ..+.||+|||+|.+.
T Consensus 76 ~~~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~---------------------------------- 121 (367)
T PRK14970 76 SFNIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLS---------------------------------- 121 (367)
T ss_pred CcceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcC----------------------------------
Confidence 33444333333346777777643 245799999999762
Q ss_pred ccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHh
Q 009640 327 STCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNY 406 (530)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~ 406 (530)
...++.|++.++.. ....++|++||.+..+.+++.+ |+ ..++++.|+.++...++...
T Consensus 122 ---------------~~~~~~ll~~le~~----~~~~~~Il~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~ 179 (367)
T PRK14970 122 ---------------SAAFNAFLKTLEEP----PAHAIFILATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGI 179 (367)
T ss_pred ---------------HHHHHHHHHHHhCC----CCceEEEEEeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHH
Confidence 11356788877753 3456788888889999999998 54 35899999999888777765
Q ss_pred hC
Q 009640 407 LG 408 (530)
Q Consensus 407 l~ 408 (530)
+.
T Consensus 180 ~~ 181 (367)
T PRK14970 180 AV 181 (367)
T ss_pred HH
Confidence 53
No 88
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.57 E-value=4.4e-14 Score=154.28 Aligned_cols=156 Identities=16% Similarity=0.290 Sum_probs=115.9
Q ss_pred cCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcC-----------
Q 009640 185 VPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLC----------- 253 (530)
Q Consensus 185 ~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~----------- 253 (530)
...++|.+|++++|++.+++.+...+.. + ..+.+|||+||||||||++|+++|+.+.
T Consensus 7 ~~KyRP~~F~dIIGQe~iv~~L~~aI~~---~---------rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg 74 (605)
T PRK05896 7 YRKYRPHNFKQIIGQELIKKILVNAILN---N---------KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCN 74 (605)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHc---C---------CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCc
Confidence 4557899999999999988777664421 1 1136899999999999999999999874
Q ss_pred -------------CcEEEEecCccCChHHHHHHHHhc------CCCeEEEEcCccchhhhhhhhhhcccCCccccccccc
Q 009640 254 -------------YDVYDLELTKVTDNSELRALLLQT------TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRS 314 (530)
Q Consensus 254 -------------~~i~~l~l~~~~~~~~L~~l~~~~------~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~ 314 (530)
.+++.++..+..+-.+++.+.... ....|++|||+|.+-
T Consensus 75 ~C~sCr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt---------------------- 132 (605)
T PRK05896 75 SCSVCESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS---------------------- 132 (605)
T ss_pred ccHHHHHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCC----------------------
Confidence 255556554434455677766543 245699999999861
Q ss_pred hhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCC
Q 009640 315 SSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTC 394 (530)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p 394 (530)
....+.||..|+.. .+..++|++|+.+..|.+++++ |+. .++|..+
T Consensus 133 ---------------------------~~A~NaLLKtLEEP----p~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~L 178 (605)
T PRK05896 133 ---------------------------TSAWNALLKTLEEP----PKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKL 178 (605)
T ss_pred ---------------------------HHHHHHHHHHHHhC----CCcEEEEEECCChHhhhHHHHh--hhh-hcccCCC
Confidence 11346788888753 3567888899999999999998 764 6899999
Q ss_pred CHHHHHHHHHHhhC
Q 009640 395 GPHAFKVLAKNYLG 408 (530)
Q Consensus 395 ~~~~r~~i~~~~l~ 408 (530)
+.++....+...+.
T Consensus 179 s~~eL~~~L~~il~ 192 (605)
T PRK05896 179 NNSELQELLKSIAK 192 (605)
T ss_pred CHHHHHHHHHHHHH
Confidence 99998888777654
No 89
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.56 E-value=1e-13 Score=154.15 Aligned_cols=156 Identities=17% Similarity=0.320 Sum_probs=116.7
Q ss_pred cCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCC----------
Q 009640 185 VPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCY---------- 254 (530)
Q Consensus 185 ~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~---------- 254 (530)
...++|.+|++|+|++.+++.+...+.. . ..+..||||||||||||++|+++|+.+..
T Consensus 9 ~~KyRP~~f~dIiGQe~~v~~L~~aI~~----~--------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC 76 (725)
T PRK07133 9 YRKYRPKTFDDIVGQDHIVQTLKNIIKS----N--------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPC 76 (725)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHc----C--------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCch
Confidence 4567899999999999988877776642 1 12468999999999999999999998743
Q ss_pred -----------cEEEEecCccCChHHHHHHHHhc------CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhh
Q 009640 255 -----------DVYDLELTKVTDNSELRALLLQT------TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSI 317 (530)
Q Consensus 255 -----------~i~~l~l~~~~~~~~L~~l~~~~------~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~ 317 (530)
+++.++...-.+-.+++.+...+ ....|++|||+|.+-
T Consensus 77 ~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT------------------------- 131 (725)
T PRK07133 77 QECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS------------------------- 131 (725)
T ss_pred hHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC-------------------------
Confidence 23334332222345577766544 345799999999871
Q ss_pred hhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHH
Q 009640 318 KEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPH 397 (530)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~ 397 (530)
....+.||..|+.. .+.+++|++|+.+++|.+++++ |+ .++.|..++.+
T Consensus 132 ------------------------~~A~NALLKtLEEP----P~~tifILaTte~~KLl~TI~S--Rc-q~ieF~~L~~e 180 (725)
T PRK07133 132 ------------------------KSAFNALLKTLEEP----PKHVIFILATTEVHKIPLTILS--RV-QRFNFRRISED 180 (725)
T ss_pred ------------------------HHHHHHHHHHhhcC----CCceEEEEEcCChhhhhHHHHh--hc-eeEEccCCCHH
Confidence 12467889988854 3567888899999999999998 77 47999999999
Q ss_pred HHHHHHHHhhC
Q 009640 398 AFKVLAKNYLG 408 (530)
Q Consensus 398 ~r~~i~~~~l~ 408 (530)
+....+...+.
T Consensus 181 eI~~~L~~il~ 191 (725)
T PRK07133 181 EIVSRLEFILE 191 (725)
T ss_pred HHHHHHHHHHH
Confidence 98888876654
No 90
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=6.7e-14 Score=153.60 Aligned_cols=156 Identities=16% Similarity=0.256 Sum_probs=113.9
Q ss_pred cCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCc---------
Q 009640 185 VPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYD--------- 255 (530)
Q Consensus 185 ~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~--------- 255 (530)
...++|.+|++|+|++.+++.|...+. ... ....||||||||||||++|+++|+.+...
T Consensus 7 a~KyRP~sf~dIiGQe~v~~~L~~ai~----~~r--------i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg 74 (624)
T PRK14959 7 TARYRPQTFAEVAGQETVKAILSRAAQ----ENR--------VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCN 74 (624)
T ss_pred HHHhCCCCHHHhcCCHHHHHHHHHHHH----cCC--------CCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCc
Confidence 455789999999999998777666543 211 13589999999999999999999998642
Q ss_pred ---------------EEEEecCccCChHHHHHHHHhc------CCCeEEEEcCccchhhhhhhhhhcccCCccccccccc
Q 009640 256 ---------------VYDLELTKVTDNSELRALLLQT------TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRS 314 (530)
Q Consensus 256 ---------------i~~l~l~~~~~~~~L~~l~~~~------~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~ 314 (530)
++.++...-..-..++.+.... ....||||||+|.+-
T Consensus 75 ~C~sC~~i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt---------------------- 132 (624)
T PRK14959 75 TCEQCRKVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT---------------------- 132 (624)
T ss_pred ccHHHHHHhcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC----------------------
Confidence 5555443222334455543222 356799999999871
Q ss_pred hhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCC
Q 009640 315 SSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTC 394 (530)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p 394 (530)
....+.||..|+.. ....++|++||.+..+.+.|++ |+ .+|+|..+
T Consensus 133 ---------------------------~~a~naLLk~LEEP----~~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pL 178 (624)
T PRK14959 133 ---------------------------REAFNALLKTLEEP----PARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRL 178 (624)
T ss_pred ---------------------------HHHHHHHHHHhhcc----CCCEEEEEecCChhhhhHHHHh--hh-hccccCCC
Confidence 22357788888753 3568899999999999999887 76 46899999
Q ss_pred CHHHHHHHHHHhhC
Q 009640 395 GPHAFKVLAKNYLG 408 (530)
Q Consensus 395 ~~~~r~~i~~~~l~ 408 (530)
+.++...++...+.
T Consensus 179 s~~eL~~~L~~il~ 192 (624)
T PRK14959 179 SEAGLEAHLTKVLG 192 (624)
T ss_pred CHHHHHHHHHHHHH
Confidence 99998888776554
No 91
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.55 E-value=1.3e-13 Score=142.75 Aligned_cols=158 Identities=13% Similarity=0.242 Sum_probs=105.9
Q ss_pred CccccCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCC-----c
Q 009640 181 GWVSVPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCY-----D 255 (530)
Q Consensus 181 ~w~~~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~-----~ 255 (530)
.| +..+.|.+|++++|++++++.+...+. .+. ..++|||||||||||++|+++|+++.. +
T Consensus 4 ~w--~~ky~P~~~~~~~g~~~~~~~L~~~~~----~~~---------~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~ 68 (337)
T PRK12402 4 LW--TEKYRPALLEDILGQDEVVERLSRAVD----SPN---------LPHLLVQGPPGSGKTAAVRALARELYGDPWENN 68 (337)
T ss_pred ch--HHhhCCCcHHHhcCCHHHHHHHHHHHh----CCC---------CceEEEECCCCCCHHHHHHHHHHHhcCcccccc
Confidence 57 677899999999999987777666442 221 237999999999999999999999842 3
Q ss_pred EEEEecCccCC--------------------------hHHHHHHHHhc-------CCCeEEEEcCccchhhhhhhhhhcc
Q 009640 256 VYDLELTKVTD--------------------------NSELRALLLQT-------TNRSIIVIEDIDCSVDLTADRMLKS 302 (530)
Q Consensus 256 i~~l~l~~~~~--------------------------~~~L~~l~~~~-------~~~sII~IDeID~~~~~~~~r~~~~ 302 (530)
+..+++..+.. ...++.++... ..+.+|+|||+|.+-+
T Consensus 69 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~--------- 139 (337)
T PRK12402 69 FTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE--------- 139 (337)
T ss_pred eEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH---------
Confidence 45555543210 11222222211 3456999999997610
Q ss_pred cCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcC
Q 009640 303 SNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRC 382 (530)
Q Consensus 303 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRp 382 (530)
.....|+..++... ....+|+||+.+..+.++|.+
T Consensus 140 ----------------------------------------~~~~~L~~~le~~~----~~~~~Il~~~~~~~~~~~L~s- 174 (337)
T PRK12402 140 ----------------------------------------DAQQALRRIMEQYS----RTCRFIIATRQPSKLIPPIRS- 174 (337)
T ss_pred ----------------------------------------HHHHHHHHHHHhcc----CCCeEEEEeCChhhCchhhcC-
Confidence 01234555555332 234466777778888888887
Q ss_pred CceeEEEEeCCCCHHHHHHHHHHhhCC
Q 009640 383 GRMDVHVSLGTCGPHAFKVLAKNYLGI 409 (530)
Q Consensus 383 GR~d~~I~~~~p~~~~r~~i~~~~l~~ 409 (530)
|+ ..+.|.+|+.++...+++..+..
T Consensus 175 -r~-~~v~~~~~~~~~~~~~l~~~~~~ 199 (337)
T PRK12402 175 -RC-LPLFFRAPTDDELVDVLESIAEA 199 (337)
T ss_pred -Cc-eEEEecCCCHHHHHHHHHHHHHH
Confidence 65 56899999999998888876543
No 92
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=1.1e-13 Score=153.18 Aligned_cols=154 Identities=16% Similarity=0.260 Sum_probs=114.9
Q ss_pred CCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCC------------
Q 009640 187 FRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCY------------ 254 (530)
Q Consensus 187 ~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~------------ 254 (530)
.++|.+|++|+|++++++.+...+.. . ..+..||||||||||||++++++|+.++.
T Consensus 9 k~RP~~f~~iiGq~~v~~~L~~~i~~----~--------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c 76 (576)
T PRK14965 9 KYRPQTFSDLTGQEHVSRTLQNAIDT----G--------RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVC 76 (576)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHHc----C--------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcc
Confidence 45889999999999988877765532 1 12468999999999999999999999853
Q ss_pred ------------cEEEEecCccCChHHHHHHHHhc------CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchh
Q 009640 255 ------------DVYDLELTKVTDNSELRALLLQT------TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSS 316 (530)
Q Consensus 255 ------------~i~~l~l~~~~~~~~L~~l~~~~------~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~ 316 (530)
+++.++..+...-.+++.+.... ...-|+||||+|.+-
T Consensus 77 ~~c~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt------------------------ 132 (576)
T PRK14965 77 PPCVEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS------------------------ 132 (576)
T ss_pred HHHHHHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCC------------------------
Confidence 24455444333445677766543 234699999999871
Q ss_pred hhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCH
Q 009640 317 IKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGP 396 (530)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~ 396 (530)
....+.||..|+.. .+.+++|++||.+++|.+.+++ |+ ..+.|..++.
T Consensus 133 -------------------------~~a~naLLk~LEep----p~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~ 180 (576)
T PRK14965 133 -------------------------TNAFNALLKTLEEP----PPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPL 180 (576)
T ss_pred -------------------------HHHHHHHHHHHHcC----CCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCH
Confidence 22457899988853 3568899999999999999997 65 4688999998
Q ss_pred HHHHHHHHHhhC
Q 009640 397 HAFKVLAKNYLG 408 (530)
Q Consensus 397 ~~r~~i~~~~l~ 408 (530)
++....+...+.
T Consensus 181 ~~i~~~L~~i~~ 192 (576)
T PRK14965 181 QKIVDRLRYIAD 192 (576)
T ss_pred HHHHHHHHHHHH
Confidence 888777776654
No 93
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.54 E-value=2.5e-13 Score=147.50 Aligned_cols=157 Identities=18% Similarity=0.277 Sum_probs=116.8
Q ss_pred cCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcC-----------
Q 009640 185 VPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLC----------- 253 (530)
Q Consensus 185 ~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~----------- 253 (530)
...++|.+|++++|++.+++.+...+. .. ..+..||||||||||||++|+++|+.+.
T Consensus 5 ~~KyRP~~fdeiiGqe~v~~~L~~~I~----~g--------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~ 72 (535)
T PRK08451 5 ALKYRPKHFDELIGQESVSKTLSLALD----NN--------RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCD 72 (535)
T ss_pred HHHHCCCCHHHccCcHHHHHHHHHHHH----cC--------CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCc
Confidence 345689999999999998877766553 21 1246799999999999999999999873
Q ss_pred -------------CcEEEEecCccCChHHHHHHHHhc------CCCeEEEEcCccchhhhhhhhhhcccCCccccccccc
Q 009640 254 -------------YDVYDLELTKVTDNSELRALLLQT------TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRS 314 (530)
Q Consensus 254 -------------~~i~~l~l~~~~~~~~L~~l~~~~------~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~ 314 (530)
.+++.++..+-.+-..++.+.... ...-|++|||+|.+-
T Consensus 73 ~C~~C~~~~~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt---------------------- 130 (535)
T PRK08451 73 TCIQCQSALENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT---------------------- 130 (535)
T ss_pred ccHHHHHHhhcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC----------------------
Confidence 245555544333456777777553 234699999999871
Q ss_pred hhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCC
Q 009640 315 SSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTC 394 (530)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p 394 (530)
....+.||..|+.. .....+|++|+.+.+|.+++++ |. .+++|..+
T Consensus 131 ---------------------------~~A~NALLK~LEEp----p~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~L 176 (535)
T PRK08451 131 ---------------------------KEAFNALLKTLEEP----PSYVKFILATTDPLKLPATILS--RT-QHFRFKQI 176 (535)
T ss_pred ---------------------------HHHHHHHHHHHhhc----CCceEEEEEECChhhCchHHHh--hc-eeEEcCCC
Confidence 23467888888854 3456788888889999999998 74 57999999
Q ss_pred CHHHHHHHHHHhhCC
Q 009640 395 GPHAFKVLAKNYLGI 409 (530)
Q Consensus 395 ~~~~r~~i~~~~l~~ 409 (530)
+.++....+...+..
T Consensus 177 s~~ei~~~L~~Il~~ 191 (535)
T PRK08451 177 PQNSIISHLKTILEK 191 (535)
T ss_pred CHHHHHHHHHHHHHH
Confidence 998888877766543
No 94
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=2.5e-13 Score=147.12 Aligned_cols=157 Identities=15% Similarity=0.284 Sum_probs=114.3
Q ss_pred cCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCC----------
Q 009640 185 VPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCY---------- 254 (530)
Q Consensus 185 ~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~---------- 254 (530)
...++|.+|++++|++.+.+.+...+.. . ..+..||||||||||||++|+++|..++.
T Consensus 7 ~~kyRP~~f~diiGq~~i~~~L~~~i~~----~--------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~ 74 (486)
T PRK14953 7 ARKYRPKFFKEVIGQEIVVRILKNAVKL----Q--------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCG 74 (486)
T ss_pred HHhhCCCcHHHccChHHHHHHHHHHHHc----C--------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCC
Confidence 4456899999999999988777665532 1 12457999999999999999999998752
Q ss_pred --------------cEEEEecCccCChHHHHHHHHhc------CCCeEEEEcCccchhhhhhhhhhcccCCccccccccc
Q 009640 255 --------------DVYDLELTKVTDNSELRALLLQT------TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRS 314 (530)
Q Consensus 255 --------------~i~~l~l~~~~~~~~L~~l~~~~------~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~ 314 (530)
+++.++.+...+-..++.+...+ ..+-|++|||+|.+-
T Consensus 75 ~c~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt---------------------- 132 (486)
T PRK14953 75 KCENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT---------------------- 132 (486)
T ss_pred ccHHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC----------------------
Confidence 34555543333444555554432 346799999999761
Q ss_pred hhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCC
Q 009640 315 SSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTC 394 (530)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p 394 (530)
....+.||..++.. ....++|++|+.++.+.+++.+ |+. .+.|..+
T Consensus 133 ---------------------------~~a~naLLk~LEep----p~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~l 178 (486)
T PRK14953 133 ---------------------------KEAFNALLKTLEEP----PPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKP 178 (486)
T ss_pred ---------------------------HHHHHHHHHHHhcC----CCCeEEEEEECCHHHHHHHHHH--hce-EEEcCCC
Confidence 11346788887753 3457788888888999999988 654 6999999
Q ss_pred CHHHHHHHHHHhhCC
Q 009640 395 GPHAFKVLAKNYLGI 409 (530)
Q Consensus 395 ~~~~r~~i~~~~l~~ 409 (530)
+.++....+...+..
T Consensus 179 s~~el~~~L~~i~k~ 193 (486)
T PRK14953 179 TKEQIKEYLKRICNE 193 (486)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999888876653
No 95
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.53 E-value=4e-13 Score=137.94 Aligned_cols=188 Identities=15% Similarity=0.217 Sum_probs=122.5
Q ss_pred CCccccCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcC-----C
Q 009640 180 SGWVSVPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLC-----Y 254 (530)
Q Consensus 180 ~~w~~~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~-----~ 254 (530)
..| +..+.|.+|+++++.+++++.+...+. ... ..++|||||||||||++++++++++. .
T Consensus 5 ~~w--~~kyrP~~~~~~~g~~~~~~~l~~~i~----~~~---------~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~ 69 (319)
T PRK00440 5 EIW--VEKYRPRTLDEIVGQEEIVERLKSYVK----EKN---------MPHLLFAGPPGTGKTTAALALARELYGEDWRE 69 (319)
T ss_pred Ccc--chhhCCCcHHHhcCcHHHHHHHHHHHh----CCC---------CCeEEEECCCCCCHHHHHHHHHHHHcCCcccc
Confidence 368 788899999999999988777666542 211 13589999999999999999999973 2
Q ss_pred cEEEEecCccCChHHHHHHHH---h-c----CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhcccccc
Q 009640 255 DVYDLELTKVTDNSELRALLL---Q-T----TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIAS 326 (530)
Q Consensus 255 ~i~~l~l~~~~~~~~L~~l~~---~-~----~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 326 (530)
.++.++.+.......++..+. . . ..+.+|+|||+|.+.+
T Consensus 70 ~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~--------------------------------- 116 (319)
T PRK00440 70 NFLELNASDERGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS--------------------------------- 116 (319)
T ss_pred ceEEeccccccchHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH---------------------------------
Confidence 344444333322222222221 1 1 2356999999998721
Q ss_pred ccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHh
Q 009640 327 STCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNY 406 (530)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~ 406 (530)
.....|+..++... ....+|+++|.+..+.+++.+ |+. .++|+.++.++...+++.+
T Consensus 117 ----------------~~~~~L~~~le~~~----~~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~ 173 (319)
T PRK00440 117 ----------------DAQQALRRTMEMYS----QNTRFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYI 173 (319)
T ss_pred ----------------HHHHHHHHHHhcCC----CCCeEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHH
Confidence 01234566665432 335677888988888888887 665 4899999999888888776
Q ss_pred hCCcCccchHHHHHHHHHhCCCCCHHHHHHHHHHhccCHHHHHHHHH
Q 009640 407 LGIESHHALFDVVESCIRAGGALTPAQIGEVLLRNRGNVDLAMKEVV 453 (530)
Q Consensus 407 l~~~~~~~~~~~i~~l~~~~~~~spadi~~~l~~~~~d~~~al~~l~ 453 (530)
+.... ..+++..+..++....+|+..++..+.
T Consensus 174 ~~~~~---------------~~i~~~al~~l~~~~~gd~r~~~~~l~ 205 (319)
T PRK00440 174 AENEG---------------IEITDDALEAIYYVSEGDMRKAINALQ 205 (319)
T ss_pred HHHcC---------------CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 64322 234555555555555555555555443
No 96
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=3.1e-13 Score=149.31 Aligned_cols=157 Identities=16% Similarity=0.296 Sum_probs=117.3
Q ss_pred cCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCc---------
Q 009640 185 VPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYD--------- 255 (530)
Q Consensus 185 ~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~--------- 255 (530)
...++|.+|++|+|++.+++.|...+.. + ..+.+||||||||||||++|+++|+.+++.
T Consensus 15 a~KyRP~~f~dliGq~~~v~~L~~~~~~---g---------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~ 82 (598)
T PRK09111 15 ARKYRPQTFDDLIGQEAMVRTLTNAFET---G---------RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPT 82 (598)
T ss_pred HhhhCCCCHHHhcCcHHHHHHHHHHHHc---C---------CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCc
Confidence 4457899999999999988877765531 1 124589999999999999999999988543
Q ss_pred --------------------EEEEecCccCChHHHHHHHHhc------CCCeEEEEcCccchhhhhhhhhhcccCCcccc
Q 009640 256 --------------------VYDLELTKVTDNSELRALLLQT------TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTA 309 (530)
Q Consensus 256 --------------------i~~l~l~~~~~~~~L~~l~~~~------~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~ 309 (530)
++.++..+..+-.+++.++..+ ...-||||||+|.+-
T Consensus 83 ~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls----------------- 145 (598)
T PRK09111 83 IDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS----------------- 145 (598)
T ss_pred cccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC-----------------
Confidence 2333333333456677776544 245799999999871
Q ss_pred ccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEE
Q 009640 310 KTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHV 389 (530)
Q Consensus 310 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I 389 (530)
....+.||..|+.. .+..++|++|+.++++.+.+++ |+ ..+
T Consensus 146 --------------------------------~~a~naLLKtLEeP----p~~~~fIl~tte~~kll~tI~S--Rc-q~~ 186 (598)
T PRK09111 146 --------------------------------TAAFNALLKTLEEP----PPHVKFIFATTEIRKVPVTVLS--RC-QRF 186 (598)
T ss_pred --------------------------------HHHHHHHHHHHHhC----CCCeEEEEEeCChhhhhHHHHh--he-eEE
Confidence 22467888888753 3567888899999999999887 66 569
Q ss_pred EeCCCCHHHHHHHHHHhhCC
Q 009640 390 SLGTCGPHAFKVLAKNYLGI 409 (530)
Q Consensus 390 ~~~~p~~~~r~~i~~~~l~~ 409 (530)
.|..++.++....+...+..
T Consensus 187 ~f~~l~~~el~~~L~~i~~k 206 (598)
T PRK09111 187 DLRRIEADVLAAHLSRIAAK 206 (598)
T ss_pred EecCCCHHHHHHHHHHHHHH
Confidence 99999999988888877654
No 97
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=4.8e-13 Score=143.93 Aligned_cols=154 Identities=15% Similarity=0.215 Sum_probs=111.2
Q ss_pred CCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCC------------
Q 009640 187 FRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCY------------ 254 (530)
Q Consensus 187 ~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~------------ 254 (530)
.++|.+|++|+|++.+++.+...+.. . ..+..||||||||||||++|+++|+.+..
T Consensus 10 kyRP~~~~diiGq~~~v~~L~~~i~~----~--------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~ 77 (451)
T PRK06305 10 KYRPQTFSEILGQDAVVAVLKNALRF----N--------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQ 77 (451)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc----C--------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcc
Confidence 35789999999999987766665532 1 12467999999999999999999998743
Q ss_pred -------------cEEEEecCccCChHHHHHHHHhc------CCCeEEEEcCccchhhhhhhhhhcccCCccccccccch
Q 009640 255 -------------DVYDLELTKVTDNSELRALLLQT------TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSS 315 (530)
Q Consensus 255 -------------~i~~l~l~~~~~~~~L~~l~~~~------~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~ 315 (530)
+++.++.....+-..++.+.... ..+.||||||+|.+-
T Consensus 78 c~~C~~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt----------------------- 134 (451)
T PRK06305 78 CASCKEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLT----------------------- 134 (451)
T ss_pred cHHHHHHhcCCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC-----------------------
Confidence 34444433223334555443222 467899999999871
Q ss_pred hhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCC
Q 009640 316 SIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCG 395 (530)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~ 395 (530)
....+.||..|+.. .+..++|++||.+.+|.+++.+ |+. .++|..++
T Consensus 135 --------------------------~~~~n~LLk~lEep----~~~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f~~l~ 181 (451)
T PRK06305 135 --------------------------KEAFNSLLKTLEEP----PQHVKFFLATTEIHKIPGTILS--RCQ-KMHLKRIP 181 (451)
T ss_pred --------------------------HHHHHHHHHHhhcC----CCCceEEEEeCChHhcchHHHH--hce-EEeCCCCC
Confidence 11346788888753 3567888889999999999998 664 58999999
Q ss_pred HHHHHHHHHHhhC
Q 009640 396 PHAFKVLAKNYLG 408 (530)
Q Consensus 396 ~~~r~~i~~~~l~ 408 (530)
.++....+...+.
T Consensus 182 ~~el~~~L~~~~~ 194 (451)
T PRK06305 182 EETIIDKLALIAK 194 (451)
T ss_pred HHHHHHHHHHHHH
Confidence 9988877766543
No 98
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.52 E-value=2.2e-13 Score=153.38 Aligned_cols=197 Identities=19% Similarity=0.213 Sum_probs=128.2
Q ss_pred CccccCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEe
Q 009640 181 GWVSVPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLE 260 (530)
Q Consensus 181 ~w~~~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~ 260 (530)
+| ....+|.+|++++|++++.... ..+...+.... ...+|||||||||||++|+++|+.++.+++.++
T Consensus 17 PL--aek~RP~tldd~vGQe~ii~~~-~~L~~~i~~~~---------~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~ln 84 (725)
T PRK13341 17 PL--ADRLRPRTLEEFVGQDHILGEG-RLLRRAIKADR---------VGSLILYGPPGVGKTTLARIIANHTRAHFSSLN 84 (725)
T ss_pred Ch--HHhcCCCcHHHhcCcHHHhhhh-HHHHHHHhcCC---------CceEEEECCCCCCHHHHHHHHHHHhcCcceeeh
Confidence 46 3456799999999998876431 12223332221 247899999999999999999999998888877
Q ss_pred cCccCChHHHHHHHHh-------cCCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCC
Q 009640 261 LTKVTDNSELRALLLQ-------TTNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNN 333 (530)
Q Consensus 261 l~~~~~~~~L~~l~~~-------~~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 333 (530)
.... +..+++..+.. ...+.||||||||.+-.
T Consensus 85 a~~~-~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~---------------------------------------- 123 (725)
T PRK13341 85 AVLA-GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNK---------------------------------------- 123 (725)
T ss_pred hhhh-hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH----------------------------------------
Confidence 6532 22334433332 24568999999998721
Q ss_pred CCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEe--CCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcC
Q 009640 334 NNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTT--NHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIES 411 (530)
Q Consensus 334 ~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TT--N~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~ 411 (530)
.....|+..++. ..+++|++| |....++++|++ |. ..+.|+.++.+++..+++.++....
T Consensus 124 ---------~qQdaLL~~lE~------g~IiLI~aTTenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~ 185 (725)
T PRK13341 124 ---------AQQDALLPWVEN------GTITLIGATTENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKE 185 (725)
T ss_pred ---------HHHHHHHHHhcC------ceEEEEEecCCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHH
Confidence 112346665542 345666654 334578999998 53 4589999999999999998765211
Q ss_pred ccchHHHHHHHHHhCCCCCHHHHHHHHHHhccCHHHHHHHHHHHH
Q 009640 412 HHALFDVVESCIRAGGALTPAQIGEVLLRNRGNVDLAMKEVVSAM 456 (530)
Q Consensus 412 ~~~~~~~i~~l~~~~~~~spadi~~~l~~~~~d~~~al~~l~~~l 456 (530)
..+......+++..+..++..+.+|.+.++..+..+.
T Consensus 186 --------~~~g~~~v~I~deaL~~La~~s~GD~R~lln~Le~a~ 222 (725)
T PRK13341 186 --------RGYGDRKVDLEPEAEKHLVDVANGDARSLLNALELAV 222 (725)
T ss_pred --------hhcCCcccCCCHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 0010112456676666666666677777766655544
No 99
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=4.6e-13 Score=147.27 Aligned_cols=154 Identities=17% Similarity=0.290 Sum_probs=114.2
Q ss_pred CCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCC------------
Q 009640 187 FRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCY------------ 254 (530)
Q Consensus 187 ~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~------------ 254 (530)
..+|.+|++|+|++.+++.+...+.. .. .+..||||||||||||++|+++|+.+..
T Consensus 9 kyRP~~f~diiGqe~iv~~L~~~i~~----~~--------i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C 76 (563)
T PRK06647 9 KRRPRDFNSLEGQDFVVETLKHSIES----NK--------IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGEC 76 (563)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHHc----CC--------CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccc
Confidence 35899999999999988877765542 11 2457999999999999999999998853
Q ss_pred ------------cEEEEecCccCChHHHHHHHHhc------CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchh
Q 009640 255 ------------DVYDLELTKVTDNSELRALLLQT------TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSS 316 (530)
Q Consensus 255 ------------~i~~l~l~~~~~~~~L~~l~~~~------~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~ 316 (530)
+++.++...-..-.+++.+...+ ...-|++|||+|.+-
T Consensus 77 ~~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls------------------------ 132 (563)
T PRK06647 77 SSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS------------------------ 132 (563)
T ss_pred hHHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC------------------------
Confidence 34444433222345666665432 355799999999871
Q ss_pred hhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCH
Q 009640 317 IKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGP 396 (530)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~ 396 (530)
....+.||..++.. ....++|++|+.+.+|.++|++ |+. .++|..++.
T Consensus 133 -------------------------~~a~naLLK~LEep----p~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~ 180 (563)
T PRK06647 133 -------------------------NSAFNALLKTIEEP----PPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSL 180 (563)
T ss_pred -------------------------HHHHHHHHHhhccC----CCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCH
Confidence 22467888888843 4568888998889999999998 764 589999999
Q ss_pred HHHHHHHHHhhC
Q 009640 397 HAFKVLAKNYLG 408 (530)
Q Consensus 397 ~~r~~i~~~~l~ 408 (530)
++...+++..+.
T Consensus 181 ~el~~~L~~i~~ 192 (563)
T PRK06647 181 EKIYNMLKKVCL 192 (563)
T ss_pred HHHHHHHHHHHH
Confidence 998888876653
No 100
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.51 E-value=1.3e-12 Score=137.03 Aligned_cols=158 Identities=15% Similarity=0.195 Sum_probs=108.4
Q ss_pred cccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcC---------CcEEEEecCc
Q 009640 193 FETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLC---------YDVYDLELTK 263 (530)
Q Consensus 193 f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~---------~~i~~l~l~~ 263 (530)
.+.+.+.++..+.|...+...+.+.. +..+++|||||||||++++++++++. ..++.+++..
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~~~---------~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~ 84 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRGSR---------PSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI 84 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCC---------CCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC
Confidence 35788988888888888877665322 35799999999999999999998763 4566666554
Q ss_pred cCChH-------------------------H-HHHHHH---hcCCCeEEEEcCccchhhhhhhhhhcccCCccccccccc
Q 009640 264 VTDNS-------------------------E-LRALLL---QTTNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRS 314 (530)
Q Consensus 264 ~~~~~-------------------------~-L~~l~~---~~~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~ 314 (530)
..+.. + +..++. ....+.||+|||+|.+..
T Consensus 85 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~--------------------- 143 (365)
T TIGR02928 85 LDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVG--------------------- 143 (365)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhcc---------------------
Confidence 33211 1 112222 234578999999999831
Q ss_pred hhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCC---CCChhhhcCCcee-EEEE
Q 009640 315 SSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRD---SVDPALIRCGRMD-VHVS 390 (530)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~---~LDpALlRpGR~d-~~I~ 390 (530)
. ....+..|+...+-. ...+..+++|++||.++ .+++.+.+ ||. ..|+
T Consensus 144 -----------------------~--~~~~L~~l~~~~~~~-~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~ 195 (365)
T TIGR02928 144 -----------------------D--DDDLLYQLSRARSNG-DLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEII 195 (365)
T ss_pred -----------------------C--CcHHHHhHhcccccc-CCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceee
Confidence 0 112345555442111 11135678899999875 58888887 664 6799
Q ss_pred eCCCCHHHHHHHHHHhhC
Q 009640 391 LGTCGPHAFKVLAKNYLG 408 (530)
Q Consensus 391 ~~~p~~~~r~~i~~~~l~ 408 (530)
|++++.++...|++..+.
T Consensus 196 f~p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 196 FPPYDAEELRDILENRAE 213 (365)
T ss_pred eCCCCHHHHHHHHHHHHH
Confidence 999999999999988774
No 101
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=3e-13 Score=143.62 Aligned_cols=154 Identities=12% Similarity=0.251 Sum_probs=109.7
Q ss_pred CCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCC------------
Q 009640 187 FRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCY------------ 254 (530)
Q Consensus 187 ~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~------------ 254 (530)
..+|.+|++|+|++.+++.+...+. ... .+..||||||||||||++|+++|+.+..
T Consensus 9 k~RP~~~~eiiGq~~~~~~L~~~~~----~~~--------~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~ 76 (397)
T PRK14955 9 KYRPKKFADITAQEHITRTIQNSLR----MGR--------VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQE 76 (397)
T ss_pred hcCCCcHhhccChHHHHHHHHHHHH----hCC--------cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCccccccc
Confidence 4688999999999998887766443 111 2457999999999999999999999854
Q ss_pred --------------------cEEEEecCccCChHHHHHHHHhc------CCCeEEEEcCccchhhhhhhhhhcccCCccc
Q 009640 255 --------------------DVYDLELTKVTDNSELRALLLQT------TNRSIIVIEDIDCSVDLTADRMLKSSNTSTT 308 (530)
Q Consensus 255 --------------------~i~~l~l~~~~~~~~L~~l~~~~------~~~sII~IDeID~~~~~~~~r~~~~~~~~~~ 308 (530)
+++.++......-.+++.+.... ...-||||||+|.+-
T Consensus 77 ~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~---------------- 140 (397)
T PRK14955 77 VTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS---------------- 140 (397)
T ss_pred CCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC----------------
Confidence 23333332223345666665444 245799999999871
Q ss_pred cccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEE
Q 009640 309 AKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVH 388 (530)
Q Consensus 309 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~ 388 (530)
....+.||..++.. .+..++|++|+.+.++-+++.+ |.. .
T Consensus 141 ---------------------------------~~~~~~LLk~LEep----~~~t~~Il~t~~~~kl~~tl~s--R~~-~ 180 (397)
T PRK14955 141 ---------------------------------IAAFNAFLKTLEEP----PPHAIFIFATTELHKIPATIAS--RCQ-R 180 (397)
T ss_pred ---------------------------------HHHHHHHHHHHhcC----CCCeEEEEEeCChHHhHHHHHH--HHH-H
Confidence 11345678877633 3456778888888899999887 654 5
Q ss_pred EEeCCCCHHHHHHHHHHhhC
Q 009640 389 VSLGTCGPHAFKVLAKNYLG 408 (530)
Q Consensus 389 I~~~~p~~~~r~~i~~~~l~ 408 (530)
++|..++.++....+...+.
T Consensus 181 v~f~~l~~~ei~~~l~~~~~ 200 (397)
T PRK14955 181 FNFKRIPLEEIQQQLQGICE 200 (397)
T ss_pred hhcCCCCHHHHHHHHHHHHH
Confidence 88999998888877776653
No 102
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.50 E-value=2.9e-13 Score=132.28 Aligned_cols=158 Identities=16% Similarity=0.230 Sum_probs=100.6
Q ss_pred CCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecC
Q 009640 186 PFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELT 262 (530)
Q Consensus 186 ~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~ 262 (530)
+...+.+|+++.. ...+.+++.+..++.. ...+.++|+||||||||++++++++++ +.+++.+++.
T Consensus 7 ~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~---------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~ 75 (226)
T TIGR03420 7 GLPDDPTFDNFYA--GGNAELLAALRQLAAG---------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLA 75 (226)
T ss_pred CCCCchhhcCcCc--CCcHHHHHHHHHHHhc---------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHH
Confidence 3456678888873 2334455555555432 124689999999999999999999987 4677777766
Q ss_pred ccCChHHHHHHHHhcCCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchh
Q 009640 263 KVTDNSELRALLLQTTNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGR 342 (530)
Q Consensus 263 ~~~~~~~L~~l~~~~~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (530)
.+.. ....++.......+|+|||+|.+- ......
T Consensus 76 ~~~~--~~~~~~~~~~~~~lLvIDdi~~l~--------------------------------------------~~~~~~ 109 (226)
T TIGR03420 76 ELAQ--ADPEVLEGLEQADLVCLDDVEAIA--------------------------------------------GQPEWQ 109 (226)
T ss_pred HHHH--hHHHHHhhcccCCEEEEeChhhhc--------------------------------------------CChHHH
Confidence 6532 223444445566799999999861 010012
Q ss_pred hhHHHHhhhccCCccCCCCCeEEEEEeC-CCCCCC---hhhhcCCce--eEEEEeCCCCHHHHHHHHHHhhC
Q 009640 343 VTLSGLLNFTDGLWSCCSEEKIIVFTTN-HRDSVD---PALIRCGRM--DVHVSLGTCGPHAFKVLAKNYLG 408 (530)
Q Consensus 343 ~~ls~LLn~lDgl~s~~~~~~ivI~TTN-~~~~LD---pALlRpGR~--d~~I~~~~p~~~~r~~i~~~~l~ 408 (530)
..|...++.... .+. .+|+|+| .+..++ +.|.+ |+ ..+|.++.|+.+++..+++.+..
T Consensus 110 ---~~L~~~l~~~~~--~~~-~iIits~~~~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~ 173 (226)
T TIGR03420 110 ---EALFHLYNRVRE--AGG-RLLIAGRAAPAQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAA 173 (226)
T ss_pred ---HHHHHHHHHHHH--cCC-eEEEECCCChHHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHH
Confidence 233333333222 123 4555555 444432 77887 55 58899999999999999877653
No 103
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.50 E-value=4e-13 Score=154.47 Aligned_cols=158 Identities=15% Similarity=0.184 Sum_probs=110.4
Q ss_pred CCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc----------CCcEE
Q 009640 188 RHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL----------CYDVY 257 (530)
Q Consensus 188 ~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l----------~~~i~ 257 (530)
..+..++.++|.++..+.+++.+ .++ .+.+.+|+||||||||++++++|..+ +..++
T Consensus 181 ~r~~~ld~~iGr~~ei~~~i~~l----~r~---------~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~ 247 (852)
T TIGR03345 181 AREGKIDPVLGRDDEIRQMIDIL----LRR---------RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLL 247 (852)
T ss_pred hcCCCCCcccCCHHHHHHHHHHH----hcC---------CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEE
Confidence 35678899999888655444433 221 14689999999999999999999986 36678
Q ss_pred EEecCccC--------ChHHHHHHHHhc---CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhcccccc
Q 009640 258 DLELTKVT--------DNSELRALLLQT---TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIAS 326 (530)
Q Consensus 258 ~l~l~~~~--------~~~~L~~l~~~~---~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 326 (530)
.++++.+. -...++.+|... ..++||||||||.+.+..+
T Consensus 248 ~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~------------------------------ 297 (852)
T TIGR03345 248 SLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGG------------------------------ 297 (852)
T ss_pred EeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCC------------------------------
Confidence 77776543 124678888765 4689999999999852110
Q ss_pred ccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCC-----CCChhhhcCCceeEEEEeCCCCHHHHHH
Q 009640 327 STCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRD-----SVDPALIRCGRMDVHVSLGTCGPHAFKV 401 (530)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~-----~LDpALlRpGR~d~~I~~~~p~~~~r~~ 401 (530)
.......-+-|+..+. .+.+.+|+||+..+ .+||||.| ||. .|.++.|+.++...
T Consensus 298 -----------~~~~~d~~n~Lkp~l~------~G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~ 357 (852)
T TIGR03345 298 -----------QAGQGDAANLLKPALA------RGELRTIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIR 357 (852)
T ss_pred -----------ccccccHHHHhhHHhh------CCCeEEEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHH
Confidence 0000011122333332 46788999888754 48999999 996 79999999999999
Q ss_pred HHHHhhC
Q 009640 402 LAKNYLG 408 (530)
Q Consensus 402 i~~~~l~ 408 (530)
|++.+..
T Consensus 358 iL~~~~~ 364 (852)
T TIGR03345 358 MLRGLAP 364 (852)
T ss_pred HHHHHHH
Confidence 9765543
No 104
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=7.5e-13 Score=147.11 Aligned_cols=155 Identities=19% Similarity=0.299 Sum_probs=114.4
Q ss_pred CCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCC-----------
Q 009640 186 PFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCY----------- 254 (530)
Q Consensus 186 ~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~----------- 254 (530)
..++|.+|++++|++++++.|...+.. .. ...+||||||||||||++|+++|+.++.
T Consensus 8 ~kyRP~~f~~liGq~~i~~~L~~~l~~----~r--------l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~C 75 (620)
T PRK14948 8 HKYRPQRFDELVGQEAIATTLKNALIS----NR--------IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPC 75 (620)
T ss_pred HHhCCCcHhhccChHHHHHHHHHHHHc----CC--------CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCC
Confidence 456889999999999988877665542 11 1358999999999999999999999854
Q ss_pred ---------------cEEEEecCccCChHHHHHHHHhc------CCCeEEEEcCccchhhhhhhhhhcccCCcccccccc
Q 009640 255 ---------------DVYDLELTKVTDNSELRALLLQT------TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKR 313 (530)
Q Consensus 255 ---------------~i~~l~l~~~~~~~~L~~l~~~~------~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r 313 (530)
+++.++......-..++.++..+ ...-||||||+|.+-
T Consensus 76 g~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt--------------------- 134 (620)
T PRK14948 76 GKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS--------------------- 134 (620)
T ss_pred cccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC---------------------
Confidence 34455544334456777777654 234699999999871
Q ss_pred chhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCC
Q 009640 314 SSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGT 393 (530)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~ 393 (530)
....+.||..|+.. ....++|++|+.++.|-++|++ |+ ..++|..
T Consensus 135 ----------------------------~~a~naLLK~LEeP----p~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~ 179 (620)
T PRK14948 135 ----------------------------TAAFNALLKTLEEP----PPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRR 179 (620)
T ss_pred ----------------------------HHHHHHHHHHHhcC----CcCeEEEEEeCChhhhhHHHHh--he-eEEEecC
Confidence 22457889999843 3567888888999999999987 65 4588888
Q ss_pred CCHHHHHHHHHHhhC
Q 009640 394 CGPHAFKVLAKNYLG 408 (530)
Q Consensus 394 p~~~~r~~i~~~~l~ 408 (530)
++.++....+.....
T Consensus 180 l~~~ei~~~L~~ia~ 194 (620)
T PRK14948 180 IPLEAMVQHLSEIAE 194 (620)
T ss_pred CCHHHHHHHHHHHHH
Confidence 888777666655443
No 105
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.48 E-value=1.4e-12 Score=143.17 Aligned_cols=215 Identities=17% Similarity=0.216 Sum_probs=119.8
Q ss_pred CccccCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc--------
Q 009640 181 GWVSVPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL-------- 252 (530)
Q Consensus 181 ~w~~~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l-------- 252 (530)
+| ....+|.+|++++|++...+.+...+ .. +.+.++|||||||||||++|+++.+++
T Consensus 54 ~~--~~~~rp~~f~~iiGqs~~i~~l~~al----~~---------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~ 118 (531)
T TIGR02902 54 PL--SEKTRPKSFDEIIGQEEGIKALKAAL----CG---------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPF 118 (531)
T ss_pred hH--HHhhCcCCHHHeeCcHHHHHHHHHHH----hC---------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCc
Confidence 56 44578899999999998877776432 11 124689999999999999999998753
Q ss_pred --CCcEEEEecCccC-ChHHHH-HHH--------------H------------hcCCCeEEEEcCccchhhhhhhhhhcc
Q 009640 253 --CYDVYDLELTKVT-DNSELR-ALL--------------L------------QTTNRSIIVIEDIDCSVDLTADRMLKS 302 (530)
Q Consensus 253 --~~~i~~l~l~~~~-~~~~L~-~l~--------------~------------~~~~~sII~IDeID~~~~~~~~r~~~~ 302 (530)
+.+++.++++... ++..+. .++ . ......+|||||||.+-......--+
T Consensus 119 ~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~- 197 (531)
T TIGR02902 119 KEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLK- 197 (531)
T ss_pred CCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHHHHH-
Confidence 3567888765321 111111 011 0 01234799999999872111110000
Q ss_pred cCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhc-cCCccCCCCCeEEEEEeCCCCCCChhhhc
Q 009640 303 SNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFT-DGLWSCCSEEKIIVFTTNHRDSVDPALIR 381 (530)
Q Consensus 303 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~l-Dgl~s~~~~~~ivI~TTN~~~~LDpALlR 381 (530)
.+++....+... --. ..+. .+-+.+.... .++. .+-++|++|||.|+.|+|+|++
T Consensus 198 -------------~Le~~~~~~~~~--~~~---~~~~---~~~~~~~~~~~~~~~---~d~rlI~ATt~~p~~L~paLrs 253 (531)
T TIGR02902 198 -------------VLEDRKVFLDSA--YYN---SENP---NIPSHIHDIFQNGLP---ADFRLIGATTRNPEEIPPALRS 253 (531)
T ss_pred -------------HHHhCeeeeccc--ccc---ccCc---ccccchhhhcccCcc---cceEEEEEecCCcccCChHHhh
Confidence 000000000000 000 0000 0000000000 1222 2447777888999999999999
Q ss_pred CCceeEEEEeCCCCHHHHHHHHHHhhCCcCccchHHHHHHHHHhCCCCCHHHHHHHHHH
Q 009640 382 CGRMDVHVSLGTCGPHAFKVLAKNYLGIESHHALFDVVESCIRAGGALTPAQIGEVLLR 440 (530)
Q Consensus 382 pGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~i~~l~~~~~~~spadi~~~l~~ 440 (530)
|+. .|.|+.++.+++..|+++++.........+.++.++.. ..+..++.+++..
T Consensus 254 --R~~-~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y--~~n~Rel~nll~~ 307 (531)
T TIGR02902 254 --RCV-EIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKY--ASNGREAVNIVQL 307 (531)
T ss_pred --hhh-eeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHh--hhhHHHHHHHHHH
Confidence 874 68899999999999999988654433122233333321 1245666666543
No 106
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.48 E-value=6.3e-13 Score=133.47 Aligned_cols=143 Identities=19% Similarity=0.193 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccCChHHHH------------
Q 009640 204 KQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVTDNSELR------------ 271 (530)
Q Consensus 204 ~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~~~~~L~------------ 271 (530)
+.+.+.+..++.. .+.+||+||||||||++|+++|..++.+++.++++.-.+..++.
T Consensus 8 ~~l~~~~l~~l~~-----------g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~ 76 (262)
T TIGR02640 8 KRVTSRALRYLKS-----------GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVH 76 (262)
T ss_pred HHHHHHHHHHHhc-----------CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHH
Confidence 4455555555543 25799999999999999999999999999988766532222211
Q ss_pred ---------------------HHHHhcCCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCC
Q 009640 272 ---------------------ALLLQTTNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCG 330 (530)
Q Consensus 272 ---------------------~l~~~~~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 330 (530)
.++.....+.+|+|||||.+-
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~g~l~~A~~~g~~lllDEi~r~~-------------------------------------- 118 (262)
T TIGR02640 77 DQFIHNVVKLEDIVRQNWVDNRLTLAVREGFTLVYDEFTRSK-------------------------------------- 118 (262)
T ss_pred HHHHHHhhhhhcccceeecCchHHHHHHcCCEEEEcchhhCC--------------------------------------
Confidence 011122456799999999861
Q ss_pred CCCCCCCCcchhhhHHHHhhhccCCc-cC-----------CCCCeEEEEEeCCCC-----CCChhhhcCCceeEEEEeCC
Q 009640 331 NNNNNNGEESGRVTLSGLLNFTDGLW-SC-----------CSEEKIIVFTTNHRD-----SVDPALIRCGRMDVHVSLGT 393 (530)
Q Consensus 331 ~~~~~~~~~~~~~~ls~LLn~lDgl~-s~-----------~~~~~ivI~TTN~~~-----~LDpALlRpGR~d~~I~~~~ 393 (530)
..+.+.|+..|+.-. .. ...+..||+|+|... .+++||++ || ..+++++
T Consensus 119 -----------~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~--R~-~~i~i~~ 184 (262)
T TIGR02640 119 -----------PETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLD--RL-ITIFMDY 184 (262)
T ss_pred -----------HHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHHh--hc-EEEECCC
Confidence 123445555554211 00 012456889999763 67999999 98 6799999
Q ss_pred CCHHHHHHHHHHhhCC
Q 009640 394 CGPHAFKVLAKNYLGI 409 (530)
Q Consensus 394 p~~~~r~~i~~~~l~~ 409 (530)
|+.++-..|++..++.
T Consensus 185 P~~~~e~~Il~~~~~~ 200 (262)
T TIGR02640 185 PDIDTETAILRAKTDV 200 (262)
T ss_pred CCHHHHHHHHHHhhCC
Confidence 9999999999988754
No 107
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=1.5e-12 Score=144.25 Aligned_cols=154 Identities=13% Similarity=0.249 Sum_probs=111.0
Q ss_pred CCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCC------------
Q 009640 187 FRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCY------------ 254 (530)
Q Consensus 187 ~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~------------ 254 (530)
.++|.+|++++|++.+++.+...+. .. ..+.+|||+||||||||++|+++|+.+..
T Consensus 9 kyRP~~f~eivGQe~i~~~L~~~i~----~~--------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~ 76 (620)
T PRK14954 9 KYRPSKFADITAQEHITHTIQNSLR----MD--------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQE 76 (620)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHH----cC--------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccc
Confidence 3588999999999998887666432 21 22457999999999999999999999865
Q ss_pred --------------------cEEEEecCccCChHHHHHHHHhc------CCCeEEEEcCccchhhhhhhhhhcccCCccc
Q 009640 255 --------------------DVYDLELTKVTDNSELRALLLQT------TNRSIIVIEDIDCSVDLTADRMLKSSNTSTT 308 (530)
Q Consensus 255 --------------------~i~~l~l~~~~~~~~L~~l~~~~------~~~sII~IDeID~~~~~~~~r~~~~~~~~~~ 308 (530)
+++.++.....+-.+++.+.... ...-||||||+|.+-
T Consensus 77 ~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt---------------- 140 (620)
T PRK14954 77 VTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS---------------- 140 (620)
T ss_pred cCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC----------------
Confidence 22223322223345677665544 346799999999871
Q ss_pred cccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEE
Q 009640 309 AKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVH 388 (530)
Q Consensus 309 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~ 388 (530)
....+.||..|+.. .+..++|++|+.+.+|-+++.+ |. ..
T Consensus 141 ---------------------------------~~a~naLLK~LEeP----p~~tv~IL~t~~~~kLl~TI~S--Rc-~~ 180 (620)
T PRK14954 141 ---------------------------------TAAFNAFLKTLEEP----PPHAIFIFATTELHKIPATIAS--RC-QR 180 (620)
T ss_pred ---------------------------------HHHHHHHHHHHhCC----CCCeEEEEEeCChhhhhHHHHh--hc-eE
Confidence 11356788888754 3457788888888999999987 54 56
Q ss_pred EEeCCCCHHHHHHHHHHhhC
Q 009640 389 VSLGTCGPHAFKVLAKNYLG 408 (530)
Q Consensus 389 I~~~~p~~~~r~~i~~~~l~ 408 (530)
|+|..++.++....+...+.
T Consensus 181 vef~~l~~~ei~~~L~~i~~ 200 (620)
T PRK14954 181 FNFKRIPLDEIQSQLQMICR 200 (620)
T ss_pred EecCCCCHHHHHHHHHHHHH
Confidence 99999999888877766554
No 108
>PRK08727 hypothetical protein; Validated
Probab=99.48 E-value=1.3e-12 Score=128.99 Aligned_cols=186 Identities=20% Similarity=0.260 Sum_probs=116.5
Q ss_pred cCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEec
Q 009640 185 VPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLEL 261 (530)
Q Consensus 185 ~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l 261 (530)
++.....+|++++..+.- ....+..... | .+...++||||||||||+|+.|+|+++ +..+..+++
T Consensus 10 ~~~~~~~~f~~f~~~~~n---~~~~~~~~~~--------~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~ 77 (233)
T PRK08727 10 LRYPSDQRFDSYIAAPDG---LLAQLQALAA--------G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPL 77 (233)
T ss_pred CCCCCcCChhhccCCcHH---HHHHHHHHHh--------c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeH
Confidence 445667789998766542 1222222111 1 123469999999999999999998876 455556665
Q ss_pred CccCChHHHHHHHHhcCCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcch
Q 009640 262 TKVTDNSELRALLLQTTNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESG 341 (530)
Q Consensus 262 ~~~~~~~~L~~l~~~~~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (530)
.... ..+.+.+....+..+|+|||||.+.. ....
T Consensus 78 ~~~~--~~~~~~~~~l~~~dlLiIDDi~~l~~--------------------------------------------~~~~ 111 (233)
T PRK08727 78 QAAA--GRLRDALEALEGRSLVALDGLESIAG--------------------------------------------QRED 111 (233)
T ss_pred HHhh--hhHHHHHHHHhcCCEEEEeCcccccC--------------------------------------------ChHH
Confidence 4432 34556666677788999999998721 1112
Q ss_pred hhhHHHHhhhccCCccCCCCCeEEEEEeC-CCCCC---ChhhhcCCce--eEEEEeCCCCHHHHHHHHHHhhCCcCccch
Q 009640 342 RVTLSGLLNFTDGLWSCCSEEKIIVFTTN-HRDSV---DPALIRCGRM--DVHVSLGTCGPHAFKVLAKNYLGIESHHAL 415 (530)
Q Consensus 342 ~~~ls~LLn~lDgl~s~~~~~~ivI~TTN-~~~~L---DpALlRpGR~--d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~ 415 (530)
...+-.++|.+. . .+.-||+|+| .|..+ +|+|.+ || ...+.++.|+.+++..+++......
T Consensus 112 ~~~lf~l~n~~~---~---~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~----- 178 (233)
T PRK08727 112 EVALFDFHNRAR---A---AGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRR----- 178 (233)
T ss_pred HHHHHHHHHHHH---H---cCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHc-----
Confidence 233444555442 1 2233555555 66655 799998 86 5789999999999999998754321
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHhccCHHHHHHH
Q 009640 416 FDVVESCIRAGGALTPAQIGEVLLRNRGNVDLAMKE 451 (530)
Q Consensus 416 ~~~i~~l~~~~~~~spadi~~~l~~~~~d~~~al~~ 451 (530)
...+++..+..++.+..+|...++..
T Consensus 179 ----------~l~l~~e~~~~La~~~~rd~r~~l~~ 204 (233)
T PRK08727 179 ----------GLALDEAAIDWLLTHGERELAGLVAL 204 (233)
T ss_pred ----------CCCCCHHHHHHHHHhCCCCHHHHHHH
Confidence 23355555555555555566666443
No 109
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.47 E-value=5.9e-13 Score=153.42 Aligned_cols=157 Identities=17% Similarity=0.240 Sum_probs=112.4
Q ss_pred CCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc----------CCcEE
Q 009640 188 RHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL----------CYDVY 257 (530)
Q Consensus 188 ~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l----------~~~i~ 257 (530)
..+..++.++|.++..+.+++.+ .++ .+.+.+|+||||||||++++++|..+ ++.++
T Consensus 172 ~r~~~l~~vigr~~ei~~~i~iL----~r~---------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~ 238 (857)
T PRK10865 172 AEQGKLDPVIGRDEEIRRTIQVL----QRR---------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVL 238 (857)
T ss_pred HhcCCCCcCCCCHHHHHHHHHHH----hcC---------CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEE
Confidence 34667889999887655554433 222 14689999999999999999999988 78888
Q ss_pred EEecCccCC--------hHHHHHHHHhc---CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhcccccc
Q 009640 258 DLELTKVTD--------NSELRALLLQT---TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIAS 326 (530)
Q Consensus 258 ~l~l~~~~~--------~~~L~~l~~~~---~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 326 (530)
.++++.+.. +..++.+|... ..++||||||||.+.+...
T Consensus 239 ~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~------------------------------ 288 (857)
T PRK10865 239 ALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGK------------------------------ 288 (857)
T ss_pred EEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCC------------------------------
Confidence 888776521 23577777653 5689999999999852110
Q ss_pred ccCCCCCCCCCCcchhhhHHHHh-hhccCCccCCCCCeEEEEEeCCCC-----CCChhhhcCCceeEEEEeCCCCHHHHH
Q 009640 327 STCGNNNNNNGEESGRVTLSGLL-NFTDGLWSCCSEEKIIVFTTNHRD-----SVDPALIRCGRMDVHVSLGTCGPHAFK 400 (530)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~ls~LL-n~lDgl~s~~~~~~ivI~TTN~~~-----~LDpALlRpGR~d~~I~~~~p~~~~r~ 400 (530)
.. .....+.+| ..+ . .+++.+|+||+..+ .+|+||.| ||+ .|.++.|+.+++.
T Consensus 289 ---------~~---~~~d~~~~lkp~l---~---~g~l~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~ 347 (857)
T PRK10865 289 ---------AD---GAMDAGNMLKPAL---A---RGELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTI 347 (857)
T ss_pred ---------Cc---cchhHHHHhcchh---h---cCCCeEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHH
Confidence 00 001112222 222 1 46789999999887 48999999 998 5899999999999
Q ss_pred HHHHHhhC
Q 009640 401 VLAKNYLG 408 (530)
Q Consensus 401 ~i~~~~l~ 408 (530)
.|++.+..
T Consensus 348 ~iL~~l~~ 355 (857)
T PRK10865 348 AILRGLKE 355 (857)
T ss_pred HHHHHHhh
Confidence 99987654
No 110
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.47 E-value=2e-12 Score=127.77 Aligned_cols=157 Identities=18% Similarity=0.184 Sum_probs=97.3
Q ss_pred CCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcC---CcEEEEecC
Q 009640 186 PFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLC---YDVYDLELT 262 (530)
Q Consensus 186 ~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~---~~i~~l~l~ 262 (530)
...+..+|+++.-.. -+.+...+..+...+. .+.++||||||||||+|+.|+|+++. ..+..+++.
T Consensus 14 ~~~~~~~fd~f~~~~--n~~a~~~l~~~~~~~~---------~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~ 82 (235)
T PRK08084 14 YLPDDETFASFYPGD--NDSLLAALQNALRQEH---------SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLD 82 (235)
T ss_pred CCCCcCCccccccCc--cHHHHHHHHHHHhCCC---------CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHH
Confidence 355677899886431 2234455555443221 35799999999999999999999874 445555554
Q ss_pred ccCChHHHHHHHHhcCCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchh
Q 009640 263 KVTDNSELRALLLQTTNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGR 342 (530)
Q Consensus 263 ~~~~~~~L~~l~~~~~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (530)
.... ...+++....+-.+|+|||||.+- ......
T Consensus 83 ~~~~--~~~~~~~~~~~~dlliiDdi~~~~--------------------------------------------~~~~~~ 116 (235)
T PRK08084 83 KRAW--FVPEVLEGMEQLSLVCIDNIECIA--------------------------------------------GDELWE 116 (235)
T ss_pred HHhh--hhHHHHHHhhhCCEEEEeChhhhc--------------------------------------------CCHHHH
Confidence 3221 122233333334689999999872 111123
Q ss_pred hhHHHHhhhccCCccCCCCC-eEEEEEeCCCCC---CChhhhcCCcee--EEEEeCCCCHHHHHHHHHHh
Q 009640 343 VTLSGLLNFTDGLWSCCSEE-KIIVFTTNHRDS---VDPALIRCGRMD--VHVSLGTCGPHAFKVLAKNY 406 (530)
Q Consensus 343 ~~ls~LLn~lDgl~s~~~~~-~ivI~TTN~~~~---LDpALlRpGR~d--~~I~~~~p~~~~r~~i~~~~ 406 (530)
..+-.++|.+ .. .+. .+|+.+++.|.. +.|.|.+ |+. ..+.+..|+.+++..+++..
T Consensus 117 ~~lf~l~n~~---~e--~g~~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~ 179 (235)
T PRK08084 117 MAIFDLYNRI---LE--SGRTRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLR 179 (235)
T ss_pred HHHHHHHHHH---HH--cCCCeEEEeCCCChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHH
Confidence 3344444443 21 123 455545555555 5799999 775 88999999999999998753
No 111
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.47 E-value=4.1e-13 Score=151.87 Aligned_cols=153 Identities=20% Similarity=0.294 Sum_probs=104.1
Q ss_pred cccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc----------CCcEEEEecC
Q 009640 193 FETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL----------CYDVYDLELT 262 (530)
Q Consensus 193 f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l----------~~~i~~l~l~ 262 (530)
++.++|.++..+.+++.+.. + .+.++||+||||||||++++++|... +..+|.+++.
T Consensus 185 ~~~liGR~~ei~~~i~iL~r----~---------~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~ 251 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCR----R---------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIG 251 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhc----c---------CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHH
Confidence 45667766655555553322 1 24678999999999999999999874 5667777655
Q ss_pred ccC--------ChHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCC
Q 009640 263 KVT--------DNSELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNN 332 (530)
Q Consensus 263 ~~~--------~~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 332 (530)
.+. .+..++.++... ..++||||||||.+++...
T Consensus 252 ~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~------------------------------------ 295 (758)
T PRK11034 252 SLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGA------------------------------------ 295 (758)
T ss_pred HHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCC------------------------------------
Confidence 432 134466666543 5689999999999863110
Q ss_pred CCCCCCcchhhhHHHHhh-hccCCccCCCCCeEEEEEeCCCC-----CCChhhhcCCceeEEEEeCCCCHHHHHHHHHHh
Q 009640 333 NNNNGEESGRVTLSGLLN-FTDGLWSCCSEEKIIVFTTNHRD-----SVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNY 406 (530)
Q Consensus 333 ~~~~~~~~~~~~ls~LLn-~lDgl~s~~~~~~ivI~TTN~~~-----~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~ 406 (530)
... ....+..+|. .+. .+++.+|++||.++ .+||||.| ||+ .|+++.|+.+++..|++.+
T Consensus 296 ----~~~-g~~d~~nlLkp~L~------~g~i~vIgATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~ 361 (758)
T PRK11034 296 ----ASG-GQVDAANLIKPLLS------SGKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGL 361 (758)
T ss_pred ----CCC-cHHHHHHHHHHHHh------CCCeEEEecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHH
Confidence 000 1111222222 221 46788999999875 57999999 996 6999999999999999876
Q ss_pred hC
Q 009640 407 LG 408 (530)
Q Consensus 407 l~ 408 (530)
..
T Consensus 362 ~~ 363 (758)
T PRK11034 362 KP 363 (758)
T ss_pred HH
Confidence 53
No 112
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=1.5e-12 Score=144.71 Aligned_cols=156 Identities=15% Similarity=0.269 Sum_probs=112.9
Q ss_pred CCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCC-----------
Q 009640 186 PFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCY----------- 254 (530)
Q Consensus 186 ~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~----------- 254 (530)
..++|.+|++|+|++.+++.|...+.. .. ....||||||||||||++++++|+.++.
T Consensus 8 ~kyRP~~~~eiiGq~~~~~~L~~~i~~----~~--------i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~ 75 (585)
T PRK14950 8 RKWRSQTFAELVGQEHVVQTLRNAIAE----GR--------VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCG 75 (585)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHHHh----CC--------CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 456899999999999988877665532 11 1346899999999999999999998742
Q ss_pred --------------cEEEEecCccCChHHHHHHHHhc------CCCeEEEEcCccchhhhhhhhhhcccCCccccccccc
Q 009640 255 --------------DVYDLELTKVTDNSELRALLLQT------TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRS 314 (530)
Q Consensus 255 --------------~i~~l~l~~~~~~~~L~~l~~~~------~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~ 314 (530)
+++.++.+...+..+++.+.... ...-||||||+|.+-
T Consensus 76 ~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~---------------------- 133 (585)
T PRK14950 76 TCEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS---------------------- 133 (585)
T ss_pred cCHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC----------------------
Confidence 34444443334455666665432 345799999999871
Q ss_pred hhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCC
Q 009640 315 SSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTC 394 (530)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p 394 (530)
...++.||..|+.. ....+||++|+..+.+.+.+.+ |+ ..++|..+
T Consensus 134 ---------------------------~~a~naLLk~LEep----p~~tv~Il~t~~~~kll~tI~S--R~-~~i~f~~l 179 (585)
T PRK14950 134 ---------------------------TAAFNALLKTLEEP----PPHAIFILATTEVHKVPATILS--RC-QRFDFHRH 179 (585)
T ss_pred ---------------------------HHHHHHHHHHHhcC----CCCeEEEEEeCChhhhhHHHHh--cc-ceeeCCCC
Confidence 12456788888754 3457888888888889888887 65 35889999
Q ss_pred CHHHHHHHHHHhhCC
Q 009640 395 GPHAFKVLAKNYLGI 409 (530)
Q Consensus 395 ~~~~r~~i~~~~l~~ 409 (530)
+..+...++...+..
T Consensus 180 ~~~el~~~L~~~a~~ 194 (585)
T PRK14950 180 SVADMAAHLRKIAAA 194 (585)
T ss_pred CHHHHHHHHHHHHHH
Confidence 998888877766543
No 113
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.45 E-value=7.1e-12 Score=132.86 Aligned_cols=158 Identities=16% Similarity=0.191 Sum_probs=107.4
Q ss_pred CcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc-----CCcEEEEecCccCC
Q 009640 192 TFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL-----CYDVYDLELTKVTD 266 (530)
Q Consensus 192 ~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l-----~~~i~~l~l~~~~~ 266 (530)
..+.+.+-++..++|...+...+.+.. +..+++|||||||||++++.+++++ +..++.+++....+
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~---------~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~ 98 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSR---------PLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRT 98 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCC---------CCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCC
Confidence 446677777777777777766554321 3578999999999999999999987 46677777654322
Q ss_pred h-----------------------HHHHHH----HHhcCCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhh
Q 009640 267 N-----------------------SELRAL----LLQTTNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKE 319 (530)
Q Consensus 267 ~-----------------------~~L~~l----~~~~~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~ 319 (530)
. .++... +.....+.||+|||+|.+..
T Consensus 99 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~-------------------------- 152 (394)
T PRK00411 99 RYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFE-------------------------- 152 (394)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhc--------------------------
Confidence 1 111111 11224568999999998730
Q ss_pred hccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCC---CCCChhhhcCCce-eEEEEeCCCC
Q 009640 320 MGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHR---DSVDPALIRCGRM-DVHVSLGTCG 395 (530)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~---~~LDpALlRpGR~-d~~I~~~~p~ 395 (530)
......+..|++.++... +.++.+|+++|.. +.++|.+.+ |+ ...|+|++++
T Consensus 153 -------------------~~~~~~l~~l~~~~~~~~---~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~ 208 (394)
T PRK00411 153 -------------------KEGNDVLYSLLRAHEEYP---GARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYT 208 (394)
T ss_pred -------------------cCCchHHHHHHHhhhccC---CCeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCC
Confidence 001235667777665442 2367788888876 357888776 55 3679999999
Q ss_pred HHHHHHHHHHhhC
Q 009640 396 PHAFKVLAKNYLG 408 (530)
Q Consensus 396 ~~~r~~i~~~~l~ 408 (530)
.++...+++..+.
T Consensus 209 ~~e~~~il~~r~~ 221 (394)
T PRK00411 209 ADEIFDILKDRVE 221 (394)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
No 114
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=3.2e-12 Score=142.17 Aligned_cols=157 Identities=17% Similarity=0.311 Sum_probs=118.0
Q ss_pred cCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcC-----------
Q 009640 185 VPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLC----------- 253 (530)
Q Consensus 185 ~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~----------- 253 (530)
...++|.+|++|+|++.+++.+...+.. . ..+..||||||+|+|||++++++|+.+.
T Consensus 8 ~~kyRP~~f~~viGq~~~~~~L~~~i~~----~--------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~C 75 (614)
T PRK14971 8 ARKYRPSTFESVVGQEALTTTLKNAIAT----N--------KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEAC 75 (614)
T ss_pred HHHHCCCCHHHhcCcHHHHHHHHHHHHc----C--------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCC
Confidence 4456889999999999988877765531 1 1246799999999999999999999874
Q ss_pred --------------CcEEEEecCccCChHHHHHHHHhc------CCCeEEEEcCccchhhhhhhhhhcccCCcccccccc
Q 009640 254 --------------YDVYDLELTKVTDNSELRALLLQT------TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKR 313 (530)
Q Consensus 254 --------------~~i~~l~l~~~~~~~~L~~l~~~~------~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r 313 (530)
.+++.++.....+-.+++.++..+ ...-|++|||+|.+-
T Consensus 76 g~C~sC~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls--------------------- 134 (614)
T PRK14971 76 NECESCVAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS--------------------- 134 (614)
T ss_pred CcchHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC---------------------
Confidence 455666555444456788777654 234599999999871
Q ss_pred chhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCC
Q 009640 314 SSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGT 393 (530)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~ 393 (530)
....+.||..|+.. .+..++|++|+.+.+|-++|++ |+ ..++|..
T Consensus 135 ----------------------------~~a~naLLK~LEep----p~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ 179 (614)
T PRK14971 135 ----------------------------QAAFNAFLKTLEEP----PSYAIFILATTEKHKILPTILS--RC-QIFDFNR 179 (614)
T ss_pred ----------------------------HHHHHHHHHHHhCC----CCCeEEEEEeCCchhchHHHHh--hh-heeecCC
Confidence 12456888888854 3557788888888999999998 65 4499999
Q ss_pred CCHHHHHHHHHHhhCC
Q 009640 394 CGPHAFKVLAKNYLGI 409 (530)
Q Consensus 394 p~~~~r~~i~~~~l~~ 409 (530)
++.++....+...+..
T Consensus 180 ls~~ei~~~L~~ia~~ 195 (614)
T PRK14971 180 IQVADIVNHLQYVASK 195 (614)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999888887766543
No 115
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.44 E-value=3e-12 Score=125.54 Aligned_cols=153 Identities=15% Similarity=0.210 Sum_probs=96.2
Q ss_pred cCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEec
Q 009640 185 VPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLEL 261 (530)
Q Consensus 185 ~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l 261 (530)
.+...+.+|+++..... +.+...+..+.. +....++++|+||||||||+|++++++++ +..++.++.
T Consensus 9 ~~~~~~~~~d~f~~~~~--~~~~~~l~~~~~--------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~ 78 (227)
T PRK08903 9 LGPPPPPTFDNFVAGEN--AELVARLRELAA--------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDA 78 (227)
T ss_pred CCCCChhhhcccccCCc--HHHHHHHHHHHh--------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeh
Confidence 45567788999873321 223333444332 12234689999999999999999999986 566777765
Q ss_pred CccCChHHHHHHHHhcCCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcch
Q 009640 262 TKVTDNSELRALLLQTTNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESG 341 (530)
Q Consensus 262 ~~~~~~~~L~~l~~~~~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (530)
.... ..+.......+|+|||+|.+- ...
T Consensus 79 ~~~~------~~~~~~~~~~~liiDdi~~l~----------------------------------------------~~~ 106 (227)
T PRK08903 79 ASPL------LAFDFDPEAELYAVDDVERLD----------------------------------------------DAQ 106 (227)
T ss_pred HHhH------HHHhhcccCCEEEEeChhhcC----------------------------------------------chH
Confidence 5432 122334567899999999861 001
Q ss_pred hhhHHHHhhhccCCccCCCCCeEEEEEeCCCC---CCChhhhcCCce--eEEEEeCCCCHHHHHHHHHHh
Q 009640 342 RVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRD---SVDPALIRCGRM--DVHVSLGTCGPHAFKVLAKNY 406 (530)
Q Consensus 342 ~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~---~LDpALlRpGR~--d~~I~~~~p~~~~r~~i~~~~ 406 (530)
. ..|+..++.... ....++|+|++.+. .+.+.|.+ |+ ...|+++.|+...+..++..+
T Consensus 107 ~---~~L~~~~~~~~~--~~~~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~ 169 (227)
T PRK08903 107 Q---IALFNLFNRVRA--HGQGALLVAGPAAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAA 169 (227)
T ss_pred H---HHHHHHHHHHHH--cCCcEEEEeCCCCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHH
Confidence 2 233444433322 23345666666432 35677876 66 579999999998887777654
No 116
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.44 E-value=7.3e-13 Score=143.04 Aligned_cols=167 Identities=19% Similarity=0.306 Sum_probs=105.2
Q ss_pred cCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc-----CCcEEEE
Q 009640 185 VPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL-----CYDVYDL 259 (530)
Q Consensus 185 ~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l-----~~~i~~l 259 (530)
....+..+|++++..+.-.. ....+..+...+ |..+ ++++||||||||||+|+.|+|+++ +..++.+
T Consensus 113 ~~l~~~~tfd~fv~g~~n~~-a~~~~~~~~~~~------~~~~-~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi 184 (450)
T PRK00149 113 SPLNPKYTFDNFVVGKSNRL-AHAAALAVAENP------GKAY-NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYV 184 (450)
T ss_pred cCCCCCCcccccccCCCcHH-HHHHHHHHHhCc------CccC-CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 34556779999754333222 333344444332 2222 579999999999999999999998 4567777
Q ss_pred ecCccCCh-------HHHHHHHHhcCCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCC
Q 009640 260 ELTKVTDN-------SELRALLLQTTNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNN 332 (530)
Q Consensus 260 ~l~~~~~~-------~~L~~l~~~~~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 332 (530)
+...+... .....+.....+..+|+|||||.+.+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~--------------------------------------- 225 (450)
T PRK00149 185 TSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAG--------------------------------------- 225 (450)
T ss_pred EHHHHHHHHHHHHHcCcHHHHHHHHhcCCEEEEehhhhhcC---------------------------------------
Confidence 76554211 11122333345688999999998721
Q ss_pred CCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCC---CChhhhcCCcee--EEEEeCCCCHHHHHHHHHHhh
Q 009640 333 NNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDS---VDPALIRCGRMD--VHVSLGTCGPHAFKVLAKNYL 407 (530)
Q Consensus 333 ~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~---LDpALlRpGR~d--~~I~~~~p~~~~r~~i~~~~l 407 (530)
.. .+...|+..++.+... +..+||.++..|.. ++++|.+ ||. ..+++..|+.++|..|++..+
T Consensus 226 -----~~---~~~~~l~~~~n~l~~~--~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~ 293 (450)
T PRK00149 226 -----KE---RTQEEFFHTFNALHEA--GKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKA 293 (450)
T ss_pred -----CH---HHHHHHHHHHHHHHHC--CCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHH
Confidence 11 1223444444444331 23344444445544 6789998 885 689999999999999999887
Q ss_pred CCc
Q 009640 408 GIE 410 (530)
Q Consensus 408 ~~~ 410 (530)
...
T Consensus 294 ~~~ 296 (450)
T PRK00149 294 EEE 296 (450)
T ss_pred HHc
Confidence 643
No 117
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.44 E-value=9.6e-13 Score=140.27 Aligned_cols=194 Identities=16% Similarity=0.227 Sum_probs=113.9
Q ss_pred CCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc-----CCcEEEEe
Q 009640 186 PFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL-----CYDVYDLE 260 (530)
Q Consensus 186 ~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l-----~~~i~~l~ 260 (530)
+..+..+|++++..+.-. .....+..+...+ |.. ..+++||||||||||+|+.|+|+++ +..++.++
T Consensus 102 ~l~~~~tfd~fi~g~~n~-~a~~~~~~~~~~~------~~~-~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 102 PLNPKYTFDNFVVGKSNR-LAHAAALAVAENP------GKA-YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred CCCCCCcccccccCCcHH-HHHHHHHHHHhCc------Ccc-CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 345667899954323222 2333344444432 111 2578999999999999999999988 56777777
Q ss_pred cCccCCh-------HHHHHHHHhcCCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCC
Q 009640 261 LTKVTDN-------SELRALLLQTTNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNN 333 (530)
Q Consensus 261 l~~~~~~-------~~L~~l~~~~~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 333 (530)
...+... ..+..+........+|+|||||.+.+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~---------------------------------------- 213 (405)
T TIGR00362 174 SEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAG---------------------------------------- 213 (405)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhCCEEEEehhhhhcC----------------------------------------
Confidence 6543210 01112222334578999999998721
Q ss_pred CCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCC---CChhhhcCCcee--EEEEeCCCCHHHHHHHHHHhhC
Q 009640 334 NNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDS---VDPALIRCGRMD--VHVSLGTCGPHAFKVLAKNYLG 408 (530)
Q Consensus 334 ~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~---LDpALlRpGR~d--~~I~~~~p~~~~r~~i~~~~l~ 408 (530)
.. .+...|+..++.+.. .+..+||.+++.|.. +++.|.+ ||. ..++++.|+.++|..|++..+.
T Consensus 214 ----~~---~~~~~l~~~~n~~~~--~~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~ 282 (405)
T TIGR00362 214 ----KE---RTQEEFFHTFNALHE--NGKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAE 282 (405)
T ss_pred ----CH---HHHHHHHHHHHHHHH--CCCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 11 112234444444433 123444444445544 5688888 886 5899999999999999998876
Q ss_pred CcCccchHHHHHHHHHhCCCCCHHHHHHHHH
Q 009640 409 IESHHALFDVVESCIRAGGALTPAQIGEVLL 439 (530)
Q Consensus 409 ~~~~~~~~~~i~~l~~~~~~~spadi~~~l~ 439 (530)
........+.++-++. ...-+..++...+.
T Consensus 283 ~~~~~l~~e~l~~ia~-~~~~~~r~l~~~l~ 312 (405)
T TIGR00362 283 EEGLELPDEVLEFIAK-NIRSNVRELEGALN 312 (405)
T ss_pred HcCCCCCHHHHHHHHH-hcCCCHHHHHHHHH
Confidence 5443322333444443 23344555555443
No 118
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.43 E-value=2.2e-12 Score=149.04 Aligned_cols=158 Identities=16% Similarity=0.192 Sum_probs=109.9
Q ss_pred CCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc----------CCcEE
Q 009640 188 RHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL----------CYDVY 257 (530)
Q Consensus 188 ~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l----------~~~i~ 257 (530)
..+..++.++|.++..+.+++.+ .++ .+...+|+||||||||+++.++|..+ +++++
T Consensus 167 ~~~~~~~~~igr~~ei~~~~~~l----~r~---------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~ 233 (852)
T TIGR03346 167 AREGKLDPVIGRDEEIRRTIQVL----SRR---------TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLL 233 (852)
T ss_pred hhCCCCCcCCCcHHHHHHHHHHH----hcC---------CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEE
Confidence 35667888999887655544433 222 24688999999999999999999986 67888
Q ss_pred EEecCccC--------ChHHHHHHHHhc---CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhcccccc
Q 009640 258 DLELTKVT--------DNSELRALLLQT---TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIAS 326 (530)
Q Consensus 258 ~l~l~~~~--------~~~~L~~l~~~~---~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 326 (530)
.+++..+. .+..++.+|... ..++||||||||.+++...
T Consensus 234 ~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~------------------------------ 283 (852)
T TIGR03346 234 ALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGK------------------------------ 283 (852)
T ss_pred EeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCC------------------------------
Confidence 88776542 123577777654 4689999999999852100
Q ss_pred ccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCC-----CCChhhhcCCceeEEEEeCCCCHHHHHH
Q 009640 327 STCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRD-----SVDPALIRCGRMDVHVSLGTCGPHAFKV 401 (530)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~-----~LDpALlRpGR~d~~I~~~~p~~~~r~~ 401 (530)
........+-|...+ . .+.+.+|++||..+ .+|+||.| ||.. |.++.|+.+++..
T Consensus 284 -----------~~~~~d~~~~Lk~~l----~--~g~i~~IgaTt~~e~r~~~~~d~al~r--Rf~~-i~v~~p~~~~~~~ 343 (852)
T TIGR03346 284 -----------AEGAMDAGNMLKPAL----A--RGELHCIGATTLDEYRKYIEKDAALER--RFQP-VFVDEPTVEDTIS 343 (852)
T ss_pred -----------CcchhHHHHHhchhh----h--cCceEEEEeCcHHHHHHHhhcCHHHHh--cCCE-EEeCCCCHHHHHH
Confidence 000111112222222 1 46788899888764 47999999 9975 8999999999999
Q ss_pred HHHHhhC
Q 009640 402 LAKNYLG 408 (530)
Q Consensus 402 i~~~~l~ 408 (530)
|++.+..
T Consensus 344 iL~~~~~ 350 (852)
T TIGR03346 344 ILRGLKE 350 (852)
T ss_pred HHHHHHH
Confidence 9987643
No 119
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.43 E-value=3.2e-12 Score=135.63 Aligned_cols=98 Identities=24% Similarity=0.258 Sum_probs=68.3
Q ss_pred cccCChhhhHHHHHHHHHHHcChhhHhh--hcC-CCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccCC-----
Q 009640 195 TLALEPQLKKQITEDLTAFANGKEFYHR--VGR-AWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVTD----- 266 (530)
Q Consensus 195 ~l~~~~~~k~~i~~~l~~~l~~~~~y~~--~g~-~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~~----- 266 (530)
.|+|++++|+.+...+....++-..... -.. ..+.++||+||||||||++|+++|..++.+++.++.+.+..
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG 151 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVG 151 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCccc
Confidence 3799999999887766543322111000 011 23578999999999999999999999999999998876532
Q ss_pred ---hHHHHHHHHh------cCCCeEEEEcCccchh
Q 009640 267 ---NSELRALLLQ------TTNRSIIVIEDIDCSV 292 (530)
Q Consensus 267 ---~~~L~~l~~~------~~~~sII~IDeID~~~ 292 (530)
...+..++.. ...++||||||||.+.
T Consensus 152 ~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~ 186 (412)
T PRK05342 152 EDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIA 186 (412)
T ss_pred chHHHHHHHHHHhccccHHHcCCcEEEEechhhhc
Confidence 1223444332 2468999999999983
No 120
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.42 E-value=1.2e-12 Score=132.00 Aligned_cols=150 Identities=20% Similarity=0.294 Sum_probs=104.7
Q ss_pred CCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCc---EEEEecCc
Q 009640 187 FRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYD---VYDLELTK 263 (530)
Q Consensus 187 ~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~---i~~l~l~~ 263 (530)
.-+|.++++.+|++++.-+ ...+..++...+ -..++||||||||||+||+.||+...-+ |+.++.++
T Consensus 131 rmRPktL~dyvGQ~hlv~q-~gllrs~ieq~~---------ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~ 200 (554)
T KOG2028|consen 131 RMRPKTLDDYVGQSHLVGQ-DGLLRSLIEQNR---------IPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN 200 (554)
T ss_pred hcCcchHHHhcchhhhcCc-chHHHHHHHcCC---------CCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc
Confidence 3578899999998887554 344444444332 3579999999999999999999988655 66666555
Q ss_pred cCChHHHHHHHHhc-------CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCC
Q 009640 264 VTDNSELRALLLQT-------TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNN 336 (530)
Q Consensus 264 ~~~~~~L~~l~~~~-------~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 336 (530)
. +-.++|.+|.++ ..+.|||||||+.+-.
T Consensus 201 a-~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNk------------------------------------------- 236 (554)
T KOG2028|consen 201 A-KTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNK------------------------------------------- 236 (554)
T ss_pred c-chHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhh-------------------------------------------
Confidence 4 345788888875 4789999999998721
Q ss_pred CCcchhhhHHHHhhhccCCccCCCCCeEEEE-Ee-CCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHH
Q 009640 337 GEESGRVTLSGLLNFTDGLWSCCSEEKIIVF-TT-NHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKN 405 (530)
Q Consensus 337 ~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~-TT-N~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~ 405 (530)
.....||-.++ .+.+++|+ || |..-.|..||+. |+- .+.+.....++...|+.+
T Consensus 237 ------sQQD~fLP~VE------~G~I~lIGATTENPSFqln~aLlS--RC~-VfvLekL~~n~v~~iL~r 292 (554)
T KOG2028|consen 237 ------SQQDTFLPHVE------NGDITLIGATTENPSFQLNAALLS--RCR-VFVLEKLPVNAVVTILMR 292 (554)
T ss_pred ------hhhhcccceec------cCceEEEecccCCCccchhHHHHh--ccc-eeEeccCCHHHHHHHHHH
Confidence 01112444443 35577777 44 445689999998 553 356777778888888766
No 121
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.42 E-value=7.3e-12 Score=120.44 Aligned_cols=173 Identities=19% Similarity=0.284 Sum_probs=138.5
Q ss_pred ccccCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEE
Q 009640 182 WVSVPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYD 258 (530)
Q Consensus 182 w~~~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~ 258 (530)
...++..++..+.+|+|.+.+|+.+.+....|+.... ...+||||..|||||||++|+-+++ +..++.
T Consensus 48 L~pv~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~p---------ANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVE 118 (287)
T COG2607 48 LEPVPDPDPIDLADLVGVDRQKEALVRNTEQFAEGLP---------ANNVLLWGARGTGKSSLVKALLNEYADEGLRLVE 118 (287)
T ss_pred ccCCCCCCCcCHHHHhCchHHHHHHHHHHHHHHcCCc---------ccceEEecCCCCChHHHHHHHHHHHHhcCCeEEE
Confidence 4567888889999999999999999999999998543 3789999999999999999999987 667788
Q ss_pred EecCccCChHHHHHHHHhcCCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCC
Q 009640 259 LELTKVTDNSELRALLLQTTNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGE 338 (530)
Q Consensus 259 l~l~~~~~~~~L~~l~~~~~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (530)
|+-.++.+-..|..++...+.+-|||+||+-- + .+
T Consensus 119 V~k~dl~~Lp~l~~~Lr~~~~kFIlFcDDLSF--e-------------------------------------------~g 153 (287)
T COG2607 119 VDKEDLATLPDLVELLRARPEKFILFCDDLSF--E-------------------------------------------EG 153 (287)
T ss_pred EcHHHHhhHHHHHHHHhcCCceEEEEecCCCC--C-------------------------------------------CC
Confidence 87777777778888888889999999999842 1 01
Q ss_pred cchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhh--------------------cCCceeEEEEeCCCCHHH
Q 009640 339 ESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALI--------------------RCGRMDVHVSLGTCGPHA 398 (530)
Q Consensus 339 ~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALl--------------------RpGR~d~~I~~~~p~~~~ 398 (530)
......|-..|||--.....+++|.+|+|+-.-|+.-+. =..||...+.|..|+.++
T Consensus 154 ---d~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~ 230 (287)
T COG2607 154 ---DDAYKALKSALEGGVEGRPANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDE 230 (287)
T ss_pred ---chHHHHHHHHhcCCcccCCCeEEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHH
Confidence 113345667778766666789999999999766653221 123999999999999999
Q ss_pred HHHHHHHhhCCcC
Q 009640 399 FKVLAKNYLGIES 411 (530)
Q Consensus 399 r~~i~~~~l~~~~ 411 (530)
...|+.+|.....
T Consensus 231 YL~~V~~~a~~~~ 243 (287)
T COG2607 231 YLKIVDHYAKHFG 243 (287)
T ss_pred HHHHHHHHHHHcC
Confidence 9999999875433
No 122
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.40 E-value=4.9e-12 Score=143.14 Aligned_cols=159 Identities=14% Similarity=0.251 Sum_probs=112.0
Q ss_pred cccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccCChHHHHHHH
Q 009640 195 TLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVTDNSELRALL 274 (530)
Q Consensus 195 ~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~~~~~L~~l~ 274 (530)
.|+|+++.++.|.+.+.....+-. .-+ .+...+||+||||||||.+|+++|..++.+++.++++.......+.+++
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~---~~~-kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~Li 534 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLG---HEH-KPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLI 534 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhcccc---CCC-CCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHc
Confidence 368899988888888865532110 001 1123699999999999999999999999999999887764322222222
Q ss_pred ---------------Hh---cCCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCC
Q 009640 275 ---------------LQ---TTNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNN 336 (530)
Q Consensus 275 ---------------~~---~~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 336 (530)
.. ....|||+|||||.+-
T Consensus 535 G~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~-------------------------------------------- 570 (758)
T PRK11034 535 GAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAH-------------------------------------------- 570 (758)
T ss_pred CCCCCcccccccchHHHHHHhCCCcEEEeccHhhhh--------------------------------------------
Confidence 11 2356999999999871
Q ss_pred CCcchhhhHHHHhhhccCC-ccCC------CCCeEEEEEeCCC-------------------------CCCChhhhcCCc
Q 009640 337 GEESGRVTLSGLLNFTDGL-WSCC------SEEKIIVFTTNHR-------------------------DSVDPALIRCGR 384 (530)
Q Consensus 337 ~~~~~~~~ls~LLn~lDgl-~s~~------~~~~ivI~TTN~~-------------------------~~LDpALlRpGR 384 (530)
....+.||+.||.- -... -.+.|||+|||.- ..+.|.|+. |
T Consensus 571 -----~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--R 643 (758)
T PRK11034 571 -----PDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--R 643 (758)
T ss_pred -----HHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--c
Confidence 22566777777632 1100 1357899999932 135677887 9
Q ss_pred eeEEEEeCCCCHHHHHHHHHHhhC
Q 009640 385 MDVHVSLGTCGPHAFKVLAKNYLG 408 (530)
Q Consensus 385 ~d~~I~~~~p~~~~r~~i~~~~l~ 408 (530)
+|..|.|++.+.+....|+..++.
T Consensus 644 id~ii~f~~L~~~~l~~I~~~~l~ 667 (758)
T PRK11034 644 LDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHH
Confidence 999999999999999999987764
No 123
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.39 E-value=5.3e-12 Score=145.54 Aligned_cols=151 Identities=19% Similarity=0.258 Sum_probs=107.0
Q ss_pred CcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc----------CCcEEEEec
Q 009640 192 TFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL----------CYDVYDLEL 261 (530)
Q Consensus 192 ~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l----------~~~i~~l~l 261 (530)
.++.++|.++..+.+++.+. + ..++++||+||||||||+++.++|..+ +..++.+++
T Consensus 177 ~~~~~igr~~ei~~~~~~L~----r---------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~ 243 (821)
T CHL00095 177 NLDPVIGREKEIERVIQILG----R---------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDI 243 (821)
T ss_pred CCCCCCCcHHHHHHHHHHHc----c---------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeH
Confidence 35677887776666666442 2 225789999999999999999999987 478999987
Q ss_pred CccC------C--hHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCC
Q 009640 262 TKVT------D--NSELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGN 331 (530)
Q Consensus 262 ~~~~------~--~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 331 (530)
+.+. + +..++.++..+ ..++||||||||.+++..+
T Consensus 244 ~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~----------------------------------- 288 (821)
T CHL00095 244 GLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGA----------------------------------- 288 (821)
T ss_pred HHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCC-----------------------------------
Confidence 6542 1 34678888765 4689999999999863110
Q ss_pred CCCCCCCcchhhhHHHHh-hhccCCccCCCCCeEEEEEeCCCC-----CCChhhhcCCceeEEEEeCCCCHHHHHHHHHH
Q 009640 332 NNNNNGEESGRVTLSGLL-NFTDGLWSCCSEEKIIVFTTNHRD-----SVDPALIRCGRMDVHVSLGTCGPHAFKVLAKN 405 (530)
Q Consensus 332 ~~~~~~~~~~~~~ls~LL-n~lDgl~s~~~~~~ivI~TTN~~~-----~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~ 405 (530)
.. .....+.+| ..+. .+++.+|++||..+ ..||+|.| ||.. |.++.|+.++...|++.
T Consensus 289 ----~~---g~~~~a~lLkp~l~------rg~l~~IgaTt~~ey~~~ie~D~aL~r--Rf~~-I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 289 ----AE---GAIDAANILKPALA------RGELQCIGATTLDEYRKHIEKDPALER--RFQP-VYVGEPSVEETIEILFG 352 (821)
T ss_pred ----CC---CcccHHHHhHHHHh------CCCcEEEEeCCHHHHHHHHhcCHHHHh--cceE-EecCCCCHHHHHHHHHH
Confidence 00 011222333 2222 46688888888764 47999999 9975 89999999998888765
Q ss_pred h
Q 009640 406 Y 406 (530)
Q Consensus 406 ~ 406 (530)
.
T Consensus 353 l 353 (821)
T CHL00095 353 L 353 (821)
T ss_pred H
Confidence 4
No 124
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.38 E-value=8.3e-12 Score=127.48 Aligned_cols=162 Identities=12% Similarity=0.109 Sum_probs=105.4
Q ss_pred CceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccCChHHHHH------------------HHHh-cCCCeEEEEcCc
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVTDNSELRA------------------LLLQ-TTNRSIIVIEDI 288 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~~~~~L~~------------------l~~~-~~~~sII~IDeI 288 (530)
.+.+||.||||||||++++++|..++.+++.++++......++.. .|.. ...+.+|++|||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~illlDEi 143 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNVALCFDEY 143 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhCCeEEEechh
Confidence 468999999999999999999999999999998766533222111 1111 246789999999
Q ss_pred cchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhcc--------CCc--cC
Q 009640 289 DCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTD--------GLW--SC 358 (530)
Q Consensus 289 D~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lD--------gl~--s~ 358 (530)
|.+- ..+++.|...|| +.. -.
T Consensus 144 n~a~-------------------------------------------------p~~~~~L~~lLE~~~~l~i~~~~~~i~ 174 (327)
T TIGR01650 144 DAGR-------------------------------------------------PDVMFVIQRVLEAGGKLTLLDQNRVIR 174 (327)
T ss_pred hccC-------------------------------------------------HHHHHHHHHHhccCCeEEECCCceEec
Confidence 9761 112233333332 100 00
Q ss_pred CCCCeEEEEEeCCCC------------CCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCc---cchHHHHHHHH
Q 009640 359 CSEEKIIVFTTNHRD------------SVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESH---HALFDVVESCI 423 (530)
Q Consensus 359 ~~~~~ivI~TTN~~~------------~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~---~~~~~~i~~l~ 423 (530)
+.....||+|+|..+ .|++|++. ||-..+.++||+.++-..|+......... ....+.+-+++
T Consensus 175 ~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD--RF~i~~~~~Yp~~e~E~~Il~~~~~~~~~~~~~~i~~~mV~la 252 (327)
T TIGR01650 175 AHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD--RWSIVTTLNYLEHDNEAAIVLAKAKGFDDTEGKDIINAMVRVA 252 (327)
T ss_pred CCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh--heeeEeeCCCCCHHHHHHHHHhhccCCCccchHHHHHHHHHHH
Confidence 123567899999865 46899999 99999999999999999998765422111 11222222232
Q ss_pred Hh----------CCCCCHHHHHHHHHH
Q 009640 424 RA----------GGALTPAQIGEVLLR 440 (530)
Q Consensus 424 ~~----------~~~~spadi~~~l~~ 440 (530)
.. ..++||..+..+...
T Consensus 253 ~~tR~~~~~~~i~~~~SpR~li~w~~~ 279 (327)
T TIGR01650 253 DMTRNAFINGDISTVMSPRTVITWAEN 279 (327)
T ss_pred HHHHhhhccCCccccccHHHHHHHHHH
Confidence 21 346788777666544
No 125
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.38 E-value=6.2e-12 Score=137.68 Aligned_cols=168 Identities=17% Similarity=0.232 Sum_probs=104.0
Q ss_pred CCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc-----CCcEEEEe
Q 009640 186 PFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL-----CYDVYDLE 260 (530)
Q Consensus 186 ~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l-----~~~i~~l~ 260 (530)
.+....+|++++..+.-.. ....+......+ +. +.+.++|||++|||||+|+.|||+++ ++.++.++
T Consensus 280 ~L~~~~TFDnFvvG~sN~~-A~aaa~avae~~------~~-~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit 351 (617)
T PRK14086 280 RLNPKYTFDTFVIGASNRF-AHAAAVAVAEAP------AK-AYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS 351 (617)
T ss_pred CCCCCCCHhhhcCCCccHH-HHHHHHHHHhCc------cc-cCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 3456678999875443221 222222222221 11 23469999999999999999999987 46777777
Q ss_pred cCccCCh-------HHHHHHHHhcCCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCC
Q 009640 261 LTKVTDN-------SELRALLLQTTNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNN 333 (530)
Q Consensus 261 l~~~~~~-------~~L~~l~~~~~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 333 (530)
...+... ..+..+.....+..+|+||||+.+.+
T Consensus 352 aeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~g---------------------------------------- 391 (617)
T PRK14086 352 SEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLED---------------------------------------- 391 (617)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccC----------------------------------------
Confidence 6554211 11112222335679999999998731
Q ss_pred CCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCC----CCCChhhhcCCce--eEEEEeCCCCHHHHHHHHHHhh
Q 009640 334 NNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHR----DSVDPALIRCGRM--DVHVSLGTCGPHAFKVLAKNYL 407 (530)
Q Consensus 334 ~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~----~~LDpALlRpGR~--d~~I~~~~p~~~~r~~i~~~~l 407 (530)
....+ ..|++.++.+.. .+.-||+|+|.+ ..|++.|.+ || ...+.+..||.+.|..|++..+
T Consensus 392 ----ke~tq---eeLF~l~N~l~e---~gk~IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka 459 (617)
T PRK14086 392 ----KESTQ---EEFFHTFNTLHN---ANKQIVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKA 459 (617)
T ss_pred ----CHHHH---HHHHHHHHHHHh---cCCCEEEecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHH
Confidence 11112 233444443332 223355577764 357899999 76 6778999999999999999887
Q ss_pred CCcCcc
Q 009640 408 GIESHH 413 (530)
Q Consensus 408 ~~~~~~ 413 (530)
......
T Consensus 460 ~~r~l~ 465 (617)
T PRK14086 460 VQEQLN 465 (617)
T ss_pred HhcCCC
Confidence 654433
No 126
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.38 E-value=9.4e-12 Score=131.56 Aligned_cols=98 Identities=28% Similarity=0.306 Sum_probs=66.0
Q ss_pred cccCChhhhHHHHHHHHHHHcChhh----HhhhcCC-CCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccCC---
Q 009640 195 TLALEPQLKKQITEDLTAFANGKEF----YHRVGRA-WKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVTD--- 266 (530)
Q Consensus 195 ~l~~~~~~k~~i~~~l~~~l~~~~~----y~~~g~~-~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~~--- 266 (530)
.|+|+++.++.+...+....++-.. -..-+.+ .+.++||+||||||||++|+++|..++.++..++.+.+..
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 3589999999887766433322110 0000111 1467999999999999999999999999998887665421
Q ss_pred -----hHHHHHHHHh------cCCCeEEEEcCccchh
Q 009640 267 -----NSELRALLLQ------TTNRSIIVIEDIDCSV 292 (530)
Q Consensus 267 -----~~~L~~l~~~------~~~~sII~IDeID~~~ 292 (530)
...+..++.. ...++||||||||.+.
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~ 194 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKIS 194 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchhc
Confidence 1224444432 2467899999999873
No 127
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.37 E-value=3.6e-12 Score=136.90 Aligned_cols=165 Identities=19% Similarity=0.303 Sum_probs=101.1
Q ss_pred CCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc-----CCcEEEEe
Q 009640 186 PFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL-----CYDVYDLE 260 (530)
Q Consensus 186 ~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l-----~~~i~~l~ 260 (530)
+..+..+|++++..+.-.. ....+..+...+.. ..+++||||||||||+|+.|+|+++ +..++.++
T Consensus 97 ~l~~~~tFdnFv~g~~n~~-a~~~~~~~~~~~~~--------~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~ 167 (440)
T PRK14088 97 PLNPDYTFENFVVGPGNSF-AYHAALEVAKNPGR--------YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_pred CCCCCCcccccccCCchHH-HHHHHHHHHhCcCC--------CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 4456778999875444332 23334444443321 3569999999999999999999987 45677776
Q ss_pred cCccCCh-------HHHHHHHHhc-CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCC
Q 009640 261 LTKVTDN-------SELRALLLQT-TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNN 332 (530)
Q Consensus 261 l~~~~~~-------~~L~~l~~~~-~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 332 (530)
...+... ..+..+.... .++.+|+|||+|.+.+
T Consensus 168 ~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~--------------------------------------- 208 (440)
T PRK14088 168 SEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIG--------------------------------------- 208 (440)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcC---------------------------------------
Confidence 5443110 1111222222 2588999999998742
Q ss_pred CCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEe-CCCCC---CChhhhcCCce--eEEEEeCCCCHHHHHHHHHHh
Q 009640 333 NNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTT-NHRDS---VDPALIRCGRM--DVHVSLGTCGPHAFKVLAKNY 406 (530)
Q Consensus 333 ~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TT-N~~~~---LDpALlRpGR~--d~~I~~~~p~~~~r~~i~~~~ 406 (530)
... +...|+..++.+.. .+. .+|+|| +.|.. +++.|.+ || ...+.+..||.+.|..|++..
T Consensus 209 -----~~~---~q~elf~~~n~l~~--~~k-~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~ 275 (440)
T PRK14088 209 -----KTG---VQTELFHTFNELHD--SGK-QIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKM 275 (440)
T ss_pred -----cHH---HHHHHHHHHHHHHH--cCC-eEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHH
Confidence 000 11233344443333 123 455555 45554 4577887 55 578899999999999999988
Q ss_pred hCCcC
Q 009640 407 LGIES 411 (530)
Q Consensus 407 l~~~~ 411 (530)
+....
T Consensus 276 ~~~~~ 280 (440)
T PRK14088 276 LEIEH 280 (440)
T ss_pred HHhcC
Confidence 76443
No 128
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.36 E-value=8.5e-12 Score=121.98 Aligned_cols=164 Identities=19% Similarity=0.256 Sum_probs=97.7
Q ss_pred CCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc-----CCcEEEEecCc
Q 009640 189 HPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL-----CYDVYDLELTK 263 (530)
Q Consensus 189 ~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l-----~~~i~~l~l~~ 263 (530)
+..||++++-.+.-+ .....+......+. . ....++||||+|+|||+|+.||++++ +..+..++...
T Consensus 3 ~~~tFdnfv~g~~N~-~a~~~~~~ia~~~~------~-~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~ 74 (219)
T PF00308_consen 3 PKYTFDNFVVGESNE-LAYAAAKAIAENPG------E-RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEE 74 (219)
T ss_dssp TT-SCCCS--TTTTH-HHHHHHHHHHHSTT------T-SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHH
T ss_pred CCCccccCCcCCcHH-HHHHHHHHHHhcCC------C-CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHH
Confidence 567899986444322 23333444444432 1 12468999999999999999999986 56677777655
Q ss_pred cCC-------hHHHHHHHHhcCCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCC
Q 009640 264 VTD-------NSELRALLLQTTNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNN 336 (530)
Q Consensus 264 ~~~-------~~~L~~l~~~~~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 336 (530)
+.. ...+..+......-.+|+|||||.+.+
T Consensus 75 f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~------------------------------------------- 111 (219)
T PF00308_consen 75 FIREFADALRDGEIEEFKDRLRSADLLIIDDIQFLAG------------------------------------------- 111 (219)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTT-------------------------------------------
T ss_pred HHHHHHHHHHcccchhhhhhhhcCCEEEEecchhhcC-------------------------------------------
Confidence 421 122334445557789999999998731
Q ss_pred CCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCC---CChhhhcCCcee--EEEEeCCCCHHHHHHHHHHhhCCcC
Q 009640 337 GEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDS---VDPALIRCGRMD--VHVSLGTCGPHAFKVLAKNYLGIES 411 (530)
Q Consensus 337 ~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~---LDpALlRpGR~d--~~I~~~~p~~~~r~~i~~~~l~~~~ 411 (530)
. ..+...|.+.++.+.. .+..+||.+...|.. ++|.|.. ||. ..+.+..|+.+.|..|++.......
T Consensus 112 -~---~~~q~~lf~l~n~~~~--~~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~ 183 (219)
T PF00308_consen 112 -K---QRTQEELFHLFNRLIE--SGKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERG 183 (219)
T ss_dssp -H---HHHHHHHHHHHHHHHH--TTSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT
T ss_pred -c---hHHHHHHHHHHHHHHh--hCCeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhC
Confidence 1 1123344444444333 244555555566665 4678888 764 6899999999999999988765433
No 129
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.35 E-value=3e-11 Score=131.17 Aligned_cols=220 Identities=17% Similarity=0.246 Sum_probs=138.0
Q ss_pred CCccccCCCCCCCcccccCChhhhHHHHHHHHHHH---cC--------------hhhHh----hhcCCCCceEEEECCCC
Q 009640 180 SGWVSVPFRHPSTFETLALEPQLKKQITEDLTAFA---NG--------------KEFYH----RVGRAWKRGYLLYGPPG 238 (530)
Q Consensus 180 ~~w~~~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l---~~--------------~~~y~----~~g~~~~rG~LL~GPPG 238 (530)
..| |..+.|..|.+|.+++.+-+.++.+|..|= .+ ++.+. ..+.|.++-+||+||||
T Consensus 259 kLW--Vdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppG 336 (877)
T KOG1969|consen 259 KLW--VDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPG 336 (877)
T ss_pred cee--ecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCC
Confidence 368 889999999999999999999999887652 11 11111 13577788899999999
Q ss_pred CChhHHHHHHHHHcCCcEEEEecCccCChHHHHHHHHhc----------CCCeEEEEcCccchhhhhhhhhhcccCCccc
Q 009640 239 SGKSSLIAAMANYLCYDVYDLELTKVTDNSELRALLLQT----------TNRSIIVIEDIDCSVDLTADRMLKSSNTSTT 308 (530)
Q Consensus 239 TGKTsLa~AiA~~l~~~i~~l~l~~~~~~~~L~~l~~~~----------~~~sII~IDeID~~~~~~~~r~~~~~~~~~~ 308 (530)
-||||||+.||++.||.+++++.++-.+...+++.+..+ ++|..|||||||-.....
T Consensus 337 lGKTTLAHViAkqaGYsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~~~------------- 403 (877)
T KOG1969|consen 337 LGKTTLAHVIAKQAGYSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPRAA------------- 403 (877)
T ss_pred CChhHHHHHHHHhcCceEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccCCcHHH-------------
Confidence 999999999999999999999999988777666554432 579999999999652100
Q ss_pred cccccchhhhhhccccc---cccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCce
Q 009640 309 AKTKRSSSIKEMGSRIA---SSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRM 385 (530)
Q Consensus 309 ~~~~r~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~ 385 (530)
++-+.+-+. .++.+... ..+...+.--+.+| .|-||+.+|. ..-|||.----+
T Consensus 404 --------Vdvilslv~a~~k~~~Gkq~--~~~~~rkkkr~~~L------------~RPIICICNd--LYaPaLR~Lr~~ 459 (877)
T KOG1969|consen 404 --------VDVILSLVKATNKQATGKQA--KKDKKRKKKRSKLL------------TRPIICICND--LYAPALRPLRPF 459 (877)
T ss_pred --------HHHHHHHHHhhcchhhcCcc--cchhhhhhhccccc------------cCCEEEEecC--ccchhhhhcccc
Confidence 000000000 00011100 00001111112222 1458888884 456888632268
Q ss_pred eEEEEeCCCCHHHHHHHHHHhhCCcCccchHHHHHHHHHhCCCCCHHHHHHHHHHhccCHHHHHHHHH
Q 009640 386 DVHVSLGTCGPHAFKVLAKNYLGIESHHALFDVVESCIRAGGALTPAQIGEVLLRNRGNVDLAMKEVV 453 (530)
Q Consensus 386 d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~i~~l~~~~~~~spadi~~~l~~~~~d~~~al~~l~ 453 (530)
-..|+|..|......+-++.....+... .-+..|..+|..+.+|.+.|++.|.
T Consensus 460 A~ii~f~~p~~s~Lv~RL~~IC~rE~mr---------------~d~~aL~~L~el~~~DIRsCINtLQ 512 (877)
T KOG1969|consen 460 AEIIAFVPPSQSRLVERLNEICHRENMR---------------ADSKALNALCELTQNDIRSCINTLQ 512 (877)
T ss_pred eEEEEecCCChhHHHHHHHHHHhhhcCC---------------CCHHHHHHHHHHhcchHHHHHHHHH
Confidence 8899999998876655444444333322 3333444555555566666666543
No 130
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.35 E-value=1.3e-11 Score=110.15 Aligned_cols=115 Identities=26% Similarity=0.382 Sum_probs=79.7
Q ss_pred CceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecCccCChHHHH-----------HHHHhcCCCeEEEEcCccchhh
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELTKVTDNSELR-----------ALLLQTTNRSIIVIEDIDCSVD 293 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~~~~~~~~L~-----------~l~~~~~~~sII~IDeID~~~~ 293 (530)
.++++++||||||||++++++++.+ +.+++.++........... ........+.+|+|||++.+..
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~ 98 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSR 98 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhhH
Confidence 4689999999999999999999999 8899998877664332222 1122335789999999997610
Q ss_pred hhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccC--CCCCeEEEEEeCC
Q 009640 294 LTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSC--CSEEKIIVFTTNH 371 (530)
Q Consensus 294 ~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~--~~~~~ivI~TTN~ 371 (530)
.....++..+...... ...+..+|++||.
T Consensus 99 -------------------------------------------------~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~ 129 (151)
T cd00009 99 -------------------------------------------------GAQNALLRVLETLNDLRIDRENVRVIGATNR 129 (151)
T ss_pred -------------------------------------------------HHHHHHHHHHHhcCceeccCCCeEEEEecCc
Confidence 0112333333332210 0246778889988
Q ss_pred CC--CCChhhhcCCceeEEEEeCC
Q 009640 372 RD--SVDPALIRCGRMDVHVSLGT 393 (530)
Q Consensus 372 ~~--~LDpALlRpGR~d~~I~~~~ 393 (530)
.. .+++.+.. |++.+|.+++
T Consensus 130 ~~~~~~~~~~~~--r~~~~i~~~~ 151 (151)
T cd00009 130 PLLGDLDRALYD--RLDIRIVIPL 151 (151)
T ss_pred cccCCcChhHHh--hhccEeecCC
Confidence 77 78888888 9998888763
No 131
>PRK05642 DNA replication initiation factor; Validated
Probab=99.35 E-value=2.1e-11 Score=120.40 Aligned_cols=160 Identities=18% Similarity=0.225 Sum_probs=100.2
Q ss_pred cCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCC-CceEEEECCCCCChhHHHHHHHHHc---CCcEEEEe
Q 009640 185 VPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAW-KRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLE 260 (530)
Q Consensus 185 ~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~-~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~ 260 (530)
+...+..+|++++... .......+..+..... .| .++++||||+|||||+|+.|+|+++ +..++.++
T Consensus 10 ~~~~~~~tfdnF~~~~--~~~a~~~~~~~~~~~~-------~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~ 80 (234)
T PRK05642 10 VRLRDDATFANYYPGA--NAAALGYVERLCEADA-------GWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP 80 (234)
T ss_pred CCCCCcccccccCcCC--hHHHHHHHHHHhhccc-------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee
Confidence 4456677899987332 2344555544433211 12 3678999999999999999999875 56777777
Q ss_pred cCccCChHHHHHHHHhcCCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcc
Q 009640 261 LTKVTDNSELRALLLQTTNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEES 340 (530)
Q Consensus 261 l~~~~~~~~L~~l~~~~~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (530)
..++... ...++....+-.+|+||||+.+. ....
T Consensus 81 ~~~~~~~--~~~~~~~~~~~d~LiiDDi~~~~--------------------------------------------~~~~ 114 (234)
T PRK05642 81 LAELLDR--GPELLDNLEQYELVCLDDLDVIA--------------------------------------------GKAD 114 (234)
T ss_pred HHHHHhh--hHHHHHhhhhCCEEEEechhhhc--------------------------------------------CChH
Confidence 6655321 12333333444689999999762 1111
Q ss_pred hhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCC---CChhhhcCCce--eEEEEeCCCCHHHHHHHHHHh
Q 009640 341 GRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDS---VDPALIRCGRM--DVHVSLGTCGPHAFKVLAKNY 406 (530)
Q Consensus 341 ~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~---LDpALlRpGR~--d~~I~~~~p~~~~r~~i~~~~ 406 (530)
....+-.++|. +.. .+..+||.++..|.. +.|.|.+ |+ ...+.+..|+.+++..+++..
T Consensus 115 ~~~~Lf~l~n~---~~~--~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~k 178 (234)
T PRK05642 115 WEEALFHLFNR---LRD--SGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLR 178 (234)
T ss_pred HHHHHHHHHHH---HHh--cCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHH
Confidence 22234444443 332 234455544445543 3689998 77 477889999999999998854
No 132
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.35 E-value=1.3e-11 Score=132.61 Aligned_cols=167 Identities=20% Similarity=0.274 Sum_probs=101.2
Q ss_pred CCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecCc
Q 009640 187 FRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELTK 263 (530)
Q Consensus 187 ~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~~ 263 (530)
..+..+|++++..+.-+. ....+..+...+.. .-|.+ .++++||||||+|||+|++|+|+++ +..++.++...
T Consensus 104 l~~~~tFdnFv~g~~N~~-a~~~a~~~a~~~~~--~~~~~-~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~ 179 (445)
T PRK12422 104 LDPLMTFANFLVTPENDL-PHRILQEFTKVSEQ--GKGFP-FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSEL 179 (445)
T ss_pred CCccccccceeeCCcHHH-HHHHHHHHHhcccc--ccCCC-CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHH
Confidence 456678999864333221 12223333221100 00111 2679999999999999999999987 57777776544
Q ss_pred cCCh-------HHHHHHHHh-cCCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCC
Q 009640 264 VTDN-------SELRALLLQ-TTNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNN 335 (530)
Q Consensus 264 ~~~~-------~~L~~l~~~-~~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 335 (530)
+... ..+. .|.. ..+..+|+||||+.+.+
T Consensus 180 f~~~~~~~l~~~~~~-~f~~~~~~~dvLiIDDiq~l~~------------------------------------------ 216 (445)
T PRK12422 180 FTEHLVSAIRSGEMQ-RFRQFYRNVDALFIEDIEVFSG------------------------------------------ 216 (445)
T ss_pred HHHHHHHHHhcchHH-HHHHHcccCCEEEEcchhhhcC------------------------------------------
Confidence 3210 1111 1222 35678999999998621
Q ss_pred CCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCC-C---CCCChhhhcCCcee--EEEEeCCCCHHHHHHHHHHhhCC
Q 009640 336 NGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNH-R---DSVDPALIRCGRMD--VHVSLGTCGPHAFKVLAKNYLGI 409 (530)
Q Consensus 336 ~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~-~---~~LDpALlRpGR~d--~~I~~~~p~~~~r~~i~~~~l~~ 409 (530)
....+..+-.++|.+ .. .+..+|+|+|. | ..++++|.+ ||. ..+.+..|+.++|..|++.....
T Consensus 217 --k~~~qeelf~l~N~l---~~---~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~ 286 (445)
T PRK12422 217 --KGATQEEFFHTFNSL---HT---EGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEA 286 (445)
T ss_pred --ChhhHHHHHHHHHHH---HH---CCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHH
Confidence 111222333444433 22 22356666665 4 357899999 885 89999999999999999887654
Q ss_pred c
Q 009640 410 E 410 (530)
Q Consensus 410 ~ 410 (530)
.
T Consensus 287 ~ 287 (445)
T PRK12422 287 L 287 (445)
T ss_pred c
Confidence 3
No 133
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.34 E-value=2e-11 Score=116.29 Aligned_cols=123 Identities=21% Similarity=0.294 Sum_probs=90.0
Q ss_pred CceEEEECCCCCChhHHHHHHHHHcCC------------------------cEEEEecCcc-CChHHHHHHHHhc-----
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYLCY------------------------DVYDLELTKV-TDNSELRALLLQT----- 277 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l~~------------------------~i~~l~l~~~-~~~~~L~~l~~~~----- 277 (530)
+..||||||||+|||++++++|+.+.. +++.+....- .+-..++.++..+
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~~ 93 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRTPQ 93 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccCcc
Confidence 467999999999999999999998743 2333332211 2335566555443
Q ss_pred -CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCc
Q 009640 278 -TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLW 356 (530)
Q Consensus 278 -~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~ 356 (530)
..+.||||||+|.+- ....+.||..|+..
T Consensus 94 ~~~~kviiide~~~l~-------------------------------------------------~~~~~~Ll~~le~~- 123 (188)
T TIGR00678 94 ESGRRVVIIEDAERMN-------------------------------------------------EAAANALLKTLEEP- 123 (188)
T ss_pred cCCeEEEEEechhhhC-------------------------------------------------HHHHHHHHHHhcCC-
Confidence 346799999999872 12345688888753
Q ss_pred cCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHh
Q 009640 357 SCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNY 406 (530)
Q Consensus 357 s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~ 406 (530)
....++|++||.+..|++++.+ |+ ..++|.+|+.++...++...
T Consensus 124 ---~~~~~~il~~~~~~~l~~~i~s--r~-~~~~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 124 ---PPNTLFILITPSPEKLLPTIRS--RC-QVLPFPPLSEEALLQWLIRQ 167 (188)
T ss_pred ---CCCeEEEEEECChHhChHHHHh--hc-EEeeCCCCCHHHHHHHHHHc
Confidence 3457788888888999999998 66 47999999999988887765
No 134
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.33 E-value=2.8e-11 Score=138.04 Aligned_cols=155 Identities=14% Similarity=0.251 Sum_probs=109.2
Q ss_pred ccccCChhhhHHHHHHHHHHHcChhhHhhhcCC---CCc-eEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccCChHH
Q 009640 194 ETLALEPQLKKQITEDLTAFANGKEFYHRVGRA---WKR-GYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVTDNSE 269 (530)
Q Consensus 194 ~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~---~~r-G~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~~~~~ 269 (530)
+.|+|+++.++.|...+.... .|.. -+. .+||+||||||||+||+++|..++.+++.++++.+.....
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~--------~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~ 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSR--------AGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHT 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHh--------cCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhccc
Confidence 446788887777777665432 2221 123 4899999999999999999999999999998776533211
Q ss_pred -------------------HHHHHHhcCCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCC
Q 009640 270 -------------------LRALLLQTTNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCG 330 (530)
Q Consensus 270 -------------------L~~l~~~~~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 330 (530)
+...+. ....+||+|||||.+-
T Consensus 526 ~~~lig~~~gyvg~~~~~~l~~~~~-~~p~~VvllDEieka~-------------------------------------- 566 (731)
T TIGR02639 526 VSRLIGAPPGYVGFEQGGLLTEAVR-KHPHCVLLLDEIEKAH-------------------------------------- 566 (731)
T ss_pred HHHHhcCCCCCcccchhhHHHHHHH-hCCCeEEEEechhhcC--------------------------------------
Confidence 222222 2456999999999761
Q ss_pred CCCCCCCCcchhhhHHHHhhhccCCccCC-------CCCeEEEEEeCCCC-------------------------CCChh
Q 009640 331 NNNNNNGEESGRVTLSGLLNFTDGLWSCC-------SEEKIIVFTTNHRD-------------------------SVDPA 378 (530)
Q Consensus 331 ~~~~~~~~~~~~~~ls~LLn~lDgl~s~~-------~~~~ivI~TTN~~~-------------------------~LDpA 378 (530)
....+.||..||.-.-.. -.+.+||+|||... .+.|.
T Consensus 567 -----------~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pe 635 (731)
T TIGR02639 567 -----------PDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPE 635 (731)
T ss_pred -----------HHHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChH
Confidence 224566777776431100 13468999998742 25677
Q ss_pred hhcCCceeEEEEeCCCCHHHHHHHHHHhhC
Q 009640 379 LIRCGRMDVHVSLGTCGPHAFKVLAKNYLG 408 (530)
Q Consensus 379 LlRpGR~d~~I~~~~p~~~~r~~i~~~~l~ 408 (530)
|+. |||..|.|.+.+.++...|++.++.
T Consensus 636 f~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~ 663 (731)
T TIGR02639 636 FRN--RLDAIIHFNPLSEEVLEKIVQKFVD 663 (731)
T ss_pred HHh--cCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 776 9999999999999999999998865
No 135
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.32 E-value=6.6e-11 Score=122.27 Aligned_cols=156 Identities=19% Similarity=0.284 Sum_probs=102.1
Q ss_pred CCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc-------CCcEEEEe-
Q 009640 189 HPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL-------CYDVYDLE- 260 (530)
Q Consensus 189 ~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l-------~~~i~~l~- 260 (530)
.|.+|++|+|++++++.+.-.+.. +...++||+||||||||++++++|+-+ +.++-...
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~-------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~ 69 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAID-------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARP 69 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhc-------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcc
Confidence 567899999999988876542211 112479999999999999999999998 22111100
Q ss_pred -----c--------------------C----ccCChHHHHHHHHh-----------cCCCeEEEEcCccchhhhhhhhhh
Q 009640 261 -----L--------------------T----KVTDNSELRALLLQ-----------TTNRSIIVIEDIDCSVDLTADRML 300 (530)
Q Consensus 261 -----l--------------------~----~~~~~~~L~~l~~~-----------~~~~sII~IDeID~~~~~~~~r~~ 300 (530)
+ + .+.+.-++...+.. .....+||||||+.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl--------- 140 (334)
T PRK13407 70 EDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLL--------- 140 (334)
T ss_pred cCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhC---------
Confidence 0 0 00111112222111 123468999999986
Q ss_pred cccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhcc---------CCccCCCCCeEEEEEeCC
Q 009640 301 KSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTD---------GLWSCCSEEKIIVFTTNH 371 (530)
Q Consensus 301 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lD---------gl~s~~~~~~ivI~TTN~ 371 (530)
...+.+.|++.|+ |.........++|+|+|.
T Consensus 141 ----------------------------------------~~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP 180 (334)
T PRK13407 141 ----------------------------------------EDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNP 180 (334)
T ss_pred ----------------------------------------CHHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCc
Confidence 1234556666664 322222345678888886
Q ss_pred CC-CCChhhhcCCceeEEEEeCCCCH-HHHHHHHHHhhC
Q 009640 372 RD-SVDPALIRCGRMDVHVSLGTCGP-HAFKVLAKNYLG 408 (530)
Q Consensus 372 ~~-~LDpALlRpGR~d~~I~~~~p~~-~~r~~i~~~~l~ 408 (530)
.+ .++++|+. ||...|.+++|.. +++.+|+.....
T Consensus 181 ~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~~~~ 217 (334)
T PRK13407 181 EEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRRRDA 217 (334)
T ss_pred ccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHhhc
Confidence 55 69999999 9999999999987 899999987654
No 136
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.32 E-value=3.8e-11 Score=133.59 Aligned_cols=156 Identities=17% Similarity=0.282 Sum_probs=105.2
Q ss_pred ccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc----------CCcEEEEecCc
Q 009640 194 ETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL----------CYDVYDLELTK 263 (530)
Q Consensus 194 ~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l----------~~~i~~l~l~~ 263 (530)
+.|.+-++..++|...|...+.... ....+++|||||||||++++.+..+| .+.++.+++..
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsg--------pnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSG--------SNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCC--------CCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 6677777778888877776665321 12335699999999999999998877 25667787754
Q ss_pred cCCh-----------------------HHHHHHHHhc----CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchh
Q 009640 264 VTDN-----------------------SELRALLLQT----TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSS 316 (530)
Q Consensus 264 ~~~~-----------------------~~L~~l~~~~----~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~ 316 (530)
+.+. ..+..+|... ....||||||||.+..
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~k----------------------- 883 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLIT----------------------- 883 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCc-----------------------
Confidence 4322 1233444432 2357999999999841
Q ss_pred hhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCC---CCCCChhhhcCCceeE-EEEeC
Q 009640 317 IKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNH---RDSVDPALIRCGRMDV-HVSLG 392 (530)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~---~~~LDpALlRpGR~d~-~I~~~ 392 (530)
. .+..|-.|++... . .+..++||+++|. ++.|+|.+.. ||.. .|.|+
T Consensus 884 ---------------------K--~QDVLYnLFR~~~---~-s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~ 934 (1164)
T PTZ00112 884 ---------------------K--TQKVLFTLFDWPT---K-INSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFS 934 (1164)
T ss_pred ---------------------c--HHHHHHHHHHHhh---c-cCCeEEEEEecCchhcchhhhhhhhh--ccccccccCC
Confidence 0 1223444444322 1 1356788898886 6678898887 6643 48899
Q ss_pred CCCHHHHHHHHHHhhCC
Q 009640 393 TCGPHAFKVLAKNYLGI 409 (530)
Q Consensus 393 ~p~~~~r~~i~~~~l~~ 409 (530)
+++.+++..|++.-+..
T Consensus 935 PYTaEQL~dILk~RAe~ 951 (1164)
T PTZ00112 935 PYKGDEIEKIIKERLEN 951 (1164)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999877653
No 137
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.32 E-value=1.7e-11 Score=131.89 Aligned_cols=157 Identities=16% Similarity=0.322 Sum_probs=119.6
Q ss_pred CCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCc------------
Q 009640 188 RHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYD------------ 255 (530)
Q Consensus 188 ~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~------------ 255 (530)
++|.+|++++|++.+.+.|...+.. ++ ...+|||.||-||||||+|+.+|.-+++.
T Consensus 10 yRP~~F~evvGQe~v~~~L~nal~~---~r---------i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~ 77 (515)
T COG2812 10 YRPKTFDDVVGQEHVVKTLSNALEN---GR---------IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCI 77 (515)
T ss_pred hCcccHHHhcccHHHHHHHHHHHHh---Cc---------chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhh
Confidence 4889999999999988887776543 11 13589999999999999999999988543
Q ss_pred ------------EEEEecCccCChHHHHHHHHhc-C-----CCeEEEEcCccchhhhhhhhhhcccCCccccccccchhh
Q 009640 256 ------------VYDLELTKVTDNSELRALLLQT-T-----NRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSI 317 (530)
Q Consensus 256 ------------i~~l~l~~~~~~~~L~~l~~~~-~-----~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~ 317 (530)
++.++..+-.+-+++|.+..+. . +.-|++|||++.+
T Consensus 78 ~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHML-------------------------- 131 (515)
T COG2812 78 SCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHML-------------------------- 131 (515)
T ss_pred hhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhh--------------------------
Confidence 2222222223456788888776 2 3459999999987
Q ss_pred hhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHH
Q 009640 318 KEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPH 397 (530)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~ 397 (530)
+....++||..++.- ...+++|++|..+.++++.+++ |+ .+..|..-+.+
T Consensus 132 -----------------------S~~afNALLKTLEEP----P~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~ 181 (515)
T COG2812 132 -----------------------SKQAFNALLKTLEEP----PSHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLE 181 (515)
T ss_pred -----------------------hHHHHHHHhcccccC----ccCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHH
Confidence 344678999999843 5679999999999999999996 54 34678888888
Q ss_pred HHHHHHHHhhCCcCc
Q 009640 398 AFKVLAKNYLGIESH 412 (530)
Q Consensus 398 ~r~~i~~~~l~~~~~ 412 (530)
+....+...+..+..
T Consensus 182 ~I~~~L~~i~~~E~I 196 (515)
T COG2812 182 EIAKHLAAILDKEGI 196 (515)
T ss_pred HHHHHHHHHHHhcCC
Confidence 888888888875443
No 138
>PRK06620 hypothetical protein; Validated
Probab=99.31 E-value=7.7e-11 Score=114.80 Aligned_cols=150 Identities=17% Similarity=0.253 Sum_probs=94.2
Q ss_pred cCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcC-CCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCc
Q 009640 185 VPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGR-AWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTK 263 (530)
Q Consensus 185 ~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~-~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~ 263 (530)
++..+..+|++++..+.-.. ....+..+... .+. |..+.++||||||||||||++|+|+..+..+.. ...
T Consensus 7 ~~~~~~~tfd~Fvvg~~N~~-a~~~~~~~~~~------~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~ 77 (214)
T PRK06620 7 FTTSSKYHPDEFIVSSSNDQ-AYNIIKNWQCG------FGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIF 77 (214)
T ss_pred CCCCCCCCchhhEecccHHH-HHHHHHHHHHc------cccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhh
Confidence 34456668999866553222 33334443321 122 224689999999999999999999998753322 111
Q ss_pred cCChHHHHHHHHhcCCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhh
Q 009640 264 VTDNSELRALLLQTTNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRV 343 (530)
Q Consensus 264 ~~~~~~L~~l~~~~~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (530)
. .. ..+ ....+|+|||||.+ ...
T Consensus 78 ~--~~---~~~---~~~d~lliDdi~~~-------------------------------------------------~~~ 100 (214)
T PRK06620 78 F--NE---EIL---EKYNAFIIEDIENW-------------------------------------------------QEP 100 (214)
T ss_pred h--ch---hHH---hcCCEEEEeccccc-------------------------------------------------hHH
Confidence 1 11 111 24479999999954 012
Q ss_pred hHHHHhhhccCCccCCCCCeEEEEEeCCCCC--CChhhhcCCcee--EEEEeCCCCHHHHHHHHHHhhC
Q 009640 344 TLSGLLNFTDGLWSCCSEEKIIVFTTNHRDS--VDPALIRCGRMD--VHVSLGTCGPHAFKVLAKNYLG 408 (530)
Q Consensus 344 ~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~--LDpALlRpGR~d--~~I~~~~p~~~~r~~i~~~~l~ 408 (530)
.+..++|.+. . .+..+||.++..|.. + |+|++ |+. ..+.+..|+.+.+..+++..+.
T Consensus 101 ~lf~l~N~~~---e--~g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~ 161 (214)
T PRK06620 101 ALLHIFNIIN---E--KQKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFS 161 (214)
T ss_pred HHHHHHHHHH---h--cCCEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHH
Confidence 3455555553 2 244566666655554 5 88998 775 4699999999999999877644
No 139
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.31 E-value=3.4e-12 Score=115.31 Aligned_cols=62 Identities=27% Similarity=0.443 Sum_probs=48.8
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccCChHHHHHHHHh---------------cCCCeEEEEcCccch
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVTDNSELRALLLQ---------------TTNRSIIVIEDIDCS 291 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~~~~~L~~l~~~---------------~~~~sII~IDeID~~ 291 (530)
++||+||||||||+|++.+|..++.+++.+.++...+..+|.....- ...++|+|||||+.+
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin~a 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEINRA 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCGG-
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcccC
Confidence 58999999999999999999999999999999887666655432110 125789999999975
No 140
>PHA02244 ATPase-like protein
Probab=99.30 E-value=3.7e-11 Score=124.07 Aligned_cols=132 Identities=20% Similarity=0.313 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccCChHHH----------H--
Q 009640 204 KQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVTDNSEL----------R-- 271 (530)
Q Consensus 204 ~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~~~~~L----------~-- 271 (530)
......+..++... ..+||+||||||||++|++||..++.+++.++.. .+...+ .
T Consensus 106 ~~~~~ri~r~l~~~-----------~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l--~d~~~L~G~i~~~g~~~dg 172 (383)
T PHA02244 106 HYETADIAKIVNAN-----------IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAI--MDEFELKGFIDANGKFHET 172 (383)
T ss_pred HHHHHHHHHHHhcC-----------CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecC--hHHHhhcccccccccccch
Confidence 33444555665543 4799999999999999999999999999988732 111111 1
Q ss_pred HHHHhcCCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHh--
Q 009640 272 ALLLQTTNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLL-- 349 (530)
Q Consensus 272 ~l~~~~~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL-- 349 (530)
.++.......+|+|||||.+-+ .....|+.++
T Consensus 173 pLl~A~~~GgvLiLDEId~a~p----------------------------------------------~vq~~L~~lLd~ 206 (383)
T PHA02244 173 PFYEAFKKGGLFFIDEIDASIP----------------------------------------------EALIIINSAIAN 206 (383)
T ss_pred HHHHHhhcCCEEEEeCcCcCCH----------------------------------------------HHHHHHHHHhcc
Confidence 2233346778999999997621 0111122222
Q ss_pred ---hhccCCccCCCCCeEEEEEeCCC-----------CCCChhhhcCCceeEEEEeCCCCHHH
Q 009640 350 ---NFTDGLWSCCSEEKIIVFTTNHR-----------DSVDPALIRCGRMDVHVSLGTCGPHA 398 (530)
Q Consensus 350 ---n~lDgl~s~~~~~~ivI~TTN~~-----------~~LDpALlRpGR~d~~I~~~~p~~~~ 398 (530)
..+++... ...+..+|+|+|.+ ..|++|++. || .+|+|+||+..+
T Consensus 207 r~l~l~g~~i~-~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RF-v~I~~dyp~~~E 265 (383)
T PHA02244 207 KFFDFADERVT-AHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RF-APIEFDYDEKIE 265 (383)
T ss_pred CeEEecCcEEe-cCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hc-EEeeCCCCcHHH
Confidence 22222221 23567889999973 578999999 99 579999998433
No 141
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.30 E-value=1.2e-10 Score=121.36 Aligned_cols=151 Identities=18% Similarity=0.242 Sum_probs=105.9
Q ss_pred CCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCc------------
Q 009640 188 RHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYD------------ 255 (530)
Q Consensus 188 ~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~------------ 255 (530)
.||..|+.|+|++++++.+...+.. . ..+..+||+||+|+|||+++.++|+.+...
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~----g--------rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~ 84 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYRE----G--------KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLAD 84 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHc----C--------CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCC
Confidence 5899999999999988777664431 1 113479999999999999999999988441
Q ss_pred ------------------EEEEecC---------ccCChHHHHHHH---Hhc---CCCeEEEEcCccchhhhhhhhhhcc
Q 009640 256 ------------------VYDLELT---------KVTDNSELRALL---LQT---TNRSIIVIEDIDCSVDLTADRMLKS 302 (530)
Q Consensus 256 ------------------i~~l~l~---------~~~~~~~L~~l~---~~~---~~~sII~IDeID~~~~~~~~r~~~~ 302 (530)
++.+... ...+-.+++.+. ... ...-||+|||+|.+
T Consensus 85 ~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l----------- 153 (351)
T PRK09112 85 PDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDM----------- 153 (351)
T ss_pred CCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhc-----------
Confidence 1111100 001123344432 222 24568888888876
Q ss_pred cCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcC
Q 009640 303 SNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRC 382 (530)
Q Consensus 303 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRp 382 (530)
+....+.||..++.. ....++|+.|+.++.|.|.+++
T Consensus 154 --------------------------------------~~~aanaLLk~LEEp----p~~~~fiLit~~~~~llptIrS- 190 (351)
T PRK09112 154 --------------------------------------NRNAANAILKTLEEP----PARALFILISHSSGRLLPTIRS- 190 (351)
T ss_pred --------------------------------------CHHHHHHHHHHHhcC----CCCceEEEEECChhhccHHHHh-
Confidence 123456788888763 2456777778889999999987
Q ss_pred CceeEEEEeCCCCHHHHHHHHHHh
Q 009640 383 GRMDVHVSLGTCGPHAFKVLAKNY 406 (530)
Q Consensus 383 GR~d~~I~~~~p~~~~r~~i~~~~ 406 (530)
|+ .++.|+.|+.++...++...
T Consensus 191 -Rc-~~i~l~pl~~~~~~~~L~~~ 212 (351)
T PRK09112 191 -RC-QPISLKPLDDDELKKALSHL 212 (351)
T ss_pred -hc-cEEEecCCCHHHHHHHHHHh
Confidence 77 68999999999999988873
No 142
>PRK08181 transposase; Validated
Probab=99.28 E-value=3.6e-11 Score=120.75 Aligned_cols=125 Identities=18% Similarity=0.284 Sum_probs=83.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCCCccccCCCCCCCcccccC--ChhhhHHHHHH---HHHHHcChh
Q 009640 144 TLLSAYLDHVTSRAEEFERVSRERRLFTNNGHGSYDSGWVSVPFRHPSTFETLAL--EPQLKKQITED---LTAFANGKE 218 (530)
Q Consensus 144 ~vl~~yl~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~f~~l~~--~~~~k~~i~~~---l~~~l~~~~ 218 (530)
.-..+||..+++.+.+.++.++..++...+.++. ..+|+++.. .+.+.+..... +..|+..
T Consensus 40 ~~~~e~L~~ll~~E~~~R~~~~~~r~lk~A~~p~------------~~tle~fd~~~~~~~~~~~~~~L~~~~~~~~~-- 105 (269)
T PRK08181 40 WPAARFLAAIAEHELAERARRRIERHLAEAHLPP------------GKTLDSFDFEAVPMVSKAQVMAIAAGDSWLAK-- 105 (269)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC------------CCCHhhCCccCCCCCCHHHHHHHHHHHHHHhc--
Confidence 3457899999999888888888888888865432 234444421 12222222222 2234432
Q ss_pred hHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecCccCC-------hHHHHHHHHhcCCCeEEEEcCc
Q 009640 219 FYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELTKVTD-------NSELRALLLQTTNRSIIVIEDI 288 (530)
Q Consensus 219 ~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~~~~~-------~~~L~~l~~~~~~~sII~IDeI 288 (530)
..+++|+||||||||+|+.|+|+++ |+.++.++...+.. +..+.+.+....++.+|+|||+
T Consensus 106 ---------~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDl 176 (269)
T PRK08181 106 ---------GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDL 176 (269)
T ss_pred ---------CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEecc
Confidence 3689999999999999999999876 66676666544321 1234455666678899999999
Q ss_pred cch
Q 009640 289 DCS 291 (530)
Q Consensus 289 D~~ 291 (530)
+..
T Consensus 177 g~~ 179 (269)
T PRK08181 177 AYV 179 (269)
T ss_pred ccc
Confidence 975
No 143
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.28 E-value=2.2e-10 Score=118.06 Aligned_cols=148 Identities=14% Similarity=0.236 Sum_probs=108.9
Q ss_pred CcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCC--------cEEEEecC-
Q 009640 192 TFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCY--------DVYDLELT- 262 (530)
Q Consensus 192 ~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~--------~i~~l~l~- 262 (530)
+|++++|++.+++.+...+.. . ..+..||||||+|+|||++|.++|..+.. +++.+...
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~----~--------~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK----N--------RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc----C--------CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 589999999988887765521 1 22468999999999999999999997622 44444331
Q ss_pred -ccCChHHHHHHHHhc------CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCC
Q 009640 263 -KVTDNSELRALLLQT------TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNN 335 (530)
Q Consensus 263 -~~~~~~~L~~l~~~~------~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 335 (530)
...+-..++.+.... ...-|++|||+|.+-
T Consensus 70 ~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~------------------------------------------- 106 (313)
T PRK05564 70 KKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT------------------------------------------- 106 (313)
T ss_pred CCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcC-------------------------------------------
Confidence 112345677776533 345799999999871
Q ss_pred CCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhh
Q 009640 336 NGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYL 407 (530)
Q Consensus 336 ~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l 407 (530)
....+.||..|+.. .++.++|++|+.++.|-|.+.+ |. ..++|..|+.++....+...+
T Consensus 107 ------~~a~naLLK~LEep----p~~t~~il~~~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~ 165 (313)
T PRK05564 107 ------EQAQNAFLKTIEEP----PKGVFIILLCENLEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKY 165 (313)
T ss_pred ------HHHHHHHHHHhcCC----CCCeEEEEEeCChHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHh
Confidence 22356899998853 4667888888999999999998 66 479999999999887776654
No 144
>PRK06526 transposase; Provisional
Probab=99.28 E-value=1e-11 Score=123.86 Aligned_cols=126 Identities=15% Similarity=0.242 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCCCccccCCCCCCCcccccC--ChhhhHHHHHHHHHHHcChhhHhh
Q 009640 145 LLSAYLDHVTSRAEEFERVSRERRLFTNNGHGSYDSGWVSVPFRHPSTFETLAL--EPQLKKQITEDLTAFANGKEFYHR 222 (530)
Q Consensus 145 vl~~yl~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~f~~l~~--~~~~k~~i~~~l~~~l~~~~~y~~ 222 (530)
-..+||..+++.+.+.++.++..+..+.+.++. ..+|+++.. .+.+.+..+..+ ..-+|..
T Consensus 34 ~~~e~l~~ll~~E~~~R~~~~~~~~lk~a~~p~------------~~~le~fd~~~~~~~~~~~~~~l----~~~~fi~- 96 (254)
T PRK06526 34 SHEEFLAACLQREVAARESHGGEGRIRAARFPA------------RKSLEEFDFDHQRSLKRDTIAHL----GTLDFVT- 96 (254)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC------------CCChhhccCccCCCcchHHHHHH----hcCchhh-
Confidence 356899999999999999998888888876543 122222211 111222222211 1122221
Q ss_pred hcCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecCccC-------ChHHHHHHHHhcCCCeEEEEcCccch
Q 009640 223 VGRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELTKVT-------DNSELRALLLQTTNRSIIVIEDIDCS 291 (530)
Q Consensus 223 ~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~~~~-------~~~~L~~l~~~~~~~sII~IDeID~~ 291 (530)
.+.+++|+||||||||+|+.+|+.++ |+.++......+. ....+.+.+.....+.+|||||++..
T Consensus 97 ----~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~~ 171 (254)
T PRK06526 97 ----GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGYI 171 (254)
T ss_pred ----cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHhccCCEEEEcccccC
Confidence 14689999999999999999999987 5555544443321 11123444555667899999999975
No 145
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.27 E-value=8.9e-11 Score=121.63 Aligned_cols=156 Identities=17% Similarity=0.287 Sum_probs=103.3
Q ss_pred CCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCC-------cEE----
Q 009640 189 HPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCY-------DVY---- 257 (530)
Q Consensus 189 ~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~-------~i~---- 257 (530)
...+|.+|+|++++|..+...+.. |...|+||.||+|||||+++++++..+.. +|.
T Consensus 12 ~~~pf~~ivGq~~~k~al~~~~~~-------------p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~ 78 (350)
T CHL00081 12 PVFPFTAIVGQEEMKLALILNVID-------------PKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPS 78 (350)
T ss_pred CCCCHHHHhChHHHHHHHHHhccC-------------CCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCC
Confidence 455799999999999888765543 22368999999999999999999888731 111
Q ss_pred ------------------------EEecCcc---CChH------HHHHHHHh-----------cCCCeEEEEcCccchhh
Q 009640 258 ------------------------DLELTKV---TDNS------ELRALLLQ-----------TTNRSIIVIEDIDCSVD 293 (530)
Q Consensus 258 ------------------------~l~l~~~---~~~~------~L~~l~~~-----------~~~~sII~IDeID~~~~ 293 (530)
.+.+..+ .+++ ++.+.|.. .....+|+||||+.+-
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~- 157 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD- 157 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCC-
Confidence 0000000 0111 12222221 1235799999999872
Q ss_pred hhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhcc---------CCccCCCCCeE
Q 009640 294 LTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTD---------GLWSCCSEEKI 364 (530)
Q Consensus 294 ~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lD---------gl~s~~~~~~i 364 (530)
..+.+.||+.|+ |.........+
T Consensus 158 ------------------------------------------------~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfi 189 (350)
T CHL00081 158 ------------------------------------------------DHLVDILLDSAASGWNTVEREGISIRHPARFV 189 (350)
T ss_pred ------------------------------------------------HHHHHHHHHHHHhCCeEEeeCCeeeecCCCEE
Confidence 223445666553 33222234566
Q ss_pred EEEEeCCCC-CCChhhhcCCceeEEEEeCCCC-HHHHHHHHHHhhC
Q 009640 365 IVFTTNHRD-SVDPALIRCGRMDVHVSLGTCG-PHAFKVLAKNYLG 408 (530)
Q Consensus 365 vI~TTN~~~-~LDpALlRpGR~d~~I~~~~p~-~~~r~~i~~~~l~ 408 (530)
+|+|.|..+ .|.++|+. ||..+|.+.+|+ .+.+.+|++....
T Consensus 190 viaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~~e~~il~~~~~ 233 (350)
T CHL00081 190 LVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPELRVKIVEQRTS 233 (350)
T ss_pred EEeccCcccCCCCHHHHH--HhCceeecCCCCChHHHHHHHHhhhc
Confidence 777777655 69999999 999999999998 6999999987654
No 146
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.27 E-value=3.3e-10 Score=118.79 Aligned_cols=153 Identities=17% Similarity=0.251 Sum_probs=111.0
Q ss_pred CCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCC-------------
Q 009640 188 RHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCY------------- 254 (530)
Q Consensus 188 ~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~------------- 254 (530)
.+|+++++|+|++++++.+...+.. . ..+.+|||+||+|+||+++|.++|+.+-.
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~----~--------rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~ 80 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRS----G--------RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPP 80 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHc----C--------CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccc
Confidence 5899999999999988887765432 1 12458999999999999999999998721
Q ss_pred ---------------------cEEEEecC--c-------cCChHHHHHHHHhc------CCCeEEEEcCccchhhhhhhh
Q 009640 255 ---------------------DVYDLELT--K-------VTDNSELRALLLQT------TNRSIIVIEDIDCSVDLTADR 298 (530)
Q Consensus 255 ---------------------~i~~l~l~--~-------~~~~~~L~~l~~~~------~~~sII~IDeID~~~~~~~~r 298 (530)
+++.+... + ...-.+++.+.... ..+-||+|||+|.+
T Consensus 81 ~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m------- 153 (365)
T PRK07471 81 TSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM------- 153 (365)
T ss_pred ccccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc-------
Confidence 22333221 1 01224455554332 35679999999976
Q ss_pred hhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChh
Q 009640 299 MLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPA 378 (530)
Q Consensus 299 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpA 378 (530)
+....+.||..++.. ....++|++|+.++.+.|.
T Consensus 154 ------------------------------------------~~~aanaLLK~LEep----p~~~~~IL~t~~~~~llpt 187 (365)
T PRK07471 154 ------------------------------------------NANAANALLKVLEEP----PARSLFLLVSHAPARLLPT 187 (365)
T ss_pred ------------------------------------------CHHHHHHHHHHHhcC----CCCeEEEEEECCchhchHH
Confidence 233567888888753 3467888999999999999
Q ss_pred hhcCCceeEEEEeCCCCHHHHHHHHHHhhC
Q 009640 379 LIRCGRMDVHVSLGTCGPHAFKVLAKNYLG 408 (530)
Q Consensus 379 LlRpGR~d~~I~~~~p~~~~r~~i~~~~l~ 408 (530)
+++ |+ ..|.|+.|+.++...++.....
T Consensus 188 i~S--Rc-~~i~l~~l~~~~i~~~L~~~~~ 214 (365)
T PRK07471 188 IRS--RC-RKLRLRPLAPEDVIDALAAAGP 214 (365)
T ss_pred hhc--cc-eEEECCCCCHHHHHHHHHHhcc
Confidence 887 75 5689999999999988887654
No 147
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.27 E-value=8.2e-11 Score=126.71 Aligned_cols=160 Identities=17% Similarity=0.312 Sum_probs=102.6
Q ss_pred CCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc-----CCcEEEEecCcc
Q 009640 190 PSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL-----CYDVYDLELTKV 264 (530)
Q Consensus 190 ~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l-----~~~i~~l~l~~~ 264 (530)
+.+|++++..+.-. .....+..+...+ |..+ ++++||||+|||||+|++|+++++ +..++.++...+
T Consensus 111 ~~tFdnFv~g~~n~-~A~~aa~~~a~~~------~~~~-npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f 182 (450)
T PRK14087 111 ENTFENFVIGSSNE-QAFIAVQTVSKNP------GISY-NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEF 182 (450)
T ss_pred ccchhcccCCCcHH-HHHHHHHHHHhCc------Cccc-CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHH
Confidence 46888886544322 2334444444333 2222 579999999999999999999976 467777766544
Q ss_pred CCh---------HHHHHHHHhcCCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCC
Q 009640 265 TDN---------SELRALLLQTTNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNN 335 (530)
Q Consensus 265 ~~~---------~~L~~l~~~~~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 335 (530)
... ..+..+........+|+||||+.+.
T Consensus 183 ~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l~------------------------------------------- 219 (450)
T PRK14087 183 ARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFLS------------------------------------------- 219 (450)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhccCCEEEEecccccc-------------------------------------------
Confidence 211 1233333344677899999999762
Q ss_pred CCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCC-CC---CCChhhhcCCce--eEEEEeCCCCHHHHHHHHHHhhCC
Q 009640 336 NGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNH-RD---SVDPALIRCGRM--DVHVSLGTCGPHAFKVLAKNYLGI 409 (530)
Q Consensus 336 ~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~-~~---~LDpALlRpGR~--d~~I~~~~p~~~~r~~i~~~~l~~ 409 (530)
........+-.++|.+. . .+..+|+|+|. |+ .+++.|.+ || ...+.+..|+.++|..|+++.+..
T Consensus 220 -~k~~~~e~lf~l~N~~~---~---~~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~~ 290 (450)
T PRK14087 220 -YKEKTNEIFFTIFNNFI---E---NDKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEIKN 290 (450)
T ss_pred -CCHHHHHHHHHHHHHHH---H---cCCcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHHHh
Confidence 11112334445555543 2 22246666665 43 45789998 77 478889999999999999988754
No 148
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.26 E-value=2.2e-10 Score=120.13 Aligned_cols=69 Identities=19% Similarity=0.252 Sum_probs=50.6
Q ss_pred cccCChhhhHHHHHHHHHHHcChhhHhhhc-CCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCc
Q 009640 195 TLALEPQLKKQITEDLTAFANGKEFYHRVG-RAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTK 263 (530)
Q Consensus 195 ~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g-~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~ 263 (530)
-|+|+++.|+.+...+.....+......++ -..++++||+||||||||++++++|..++.+++.++.+.
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~ 82 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATK 82 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecce
Confidence 378899999988776664322211111111 123589999999999999999999999999999998653
No 149
>PRK07952 DNA replication protein DnaC; Validated
Probab=99.26 E-value=3.9e-11 Score=118.79 Aligned_cols=122 Identities=20% Similarity=0.308 Sum_probs=80.4
Q ss_pred HHHHHHHHhhhhccccCCCCCCCCCccccCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECC
Q 009640 157 AEEFERVSRERRLFTNNGHGSYDSGWVSVPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGP 236 (530)
Q Consensus 157 ~~~~~~~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GP 236 (530)
+.++.+++++.++.+... .|.-.+..+..+|+++....+..+.+...+..|..... . ...+++|+||
T Consensus 41 ~~~i~~~~~q~~~~~~~~------~s~i~~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~~~---~----~~~~~~l~G~ 107 (244)
T PRK07952 41 SAALERENRAMKMQRTFN------RSGIRPLHQNCSFENYRVECEGQMNALSKARQYVEEFD---G----NIASFIFSGK 107 (244)
T ss_pred HHHHHHHHHHHHHHHHHH------HcCCCccccCCccccccCCCchHHHHHHHHHHHHHhhc---c----CCceEEEECC
Confidence 445666666666554421 12223345677999987655545556666666664321 0 1258999999
Q ss_pred CCCChhHHHHHHHHHc---CCcEEEEecCccCC---------hHHHHHHHHhcCCCeEEEEcCccch
Q 009640 237 PGSGKSSLIAAMANYL---CYDVYDLELTKVTD---------NSELRALLLQTTNRSIIVIEDIDCS 291 (530)
Q Consensus 237 PGTGKTsLa~AiA~~l---~~~i~~l~l~~~~~---------~~~L~~l~~~~~~~sII~IDeID~~ 291 (530)
||||||+|+.|||+++ +..++.++..++.. +....+++.......+|+|||+++.
T Consensus 108 ~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~~~dlLvIDDig~~ 174 (244)
T PRK07952 108 PGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLSNVDLLVIDEIGVQ 174 (244)
T ss_pred CCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhccCCEEEEeCCCCC
Confidence 9999999999999998 66777776655421 1223455666678899999999985
No 150
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.25 E-value=2.1e-10 Score=127.94 Aligned_cols=180 Identities=17% Similarity=0.271 Sum_probs=101.0
Q ss_pred CCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc----------CCcEE
Q 009640 188 RHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL----------CYDVY 257 (530)
Q Consensus 188 ~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l----------~~~i~ 257 (530)
.+|.+|++++|++...+.+...+. .+.+..++|+||||||||++|+++++.. +.+++
T Consensus 148 ~rp~~~~~iiGqs~~~~~l~~~ia-------------~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv 214 (615)
T TIGR02903 148 LRPRAFSEIVGQERAIKALLAKVA-------------SPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFV 214 (615)
T ss_pred cCcCcHHhceeCcHHHHHHHHHHh-------------cCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeE
Confidence 468899999999887776654431 1224579999999999999999998776 34577
Q ss_pred EEecCccCC-hHHH----------------HHHHHh------------cCCCeEEEEcCccchhhhhhhhhhcccCCccc
Q 009640 258 DLELTKVTD-NSEL----------------RALLLQ------------TTNRSIIVIEDIDCSVDLTADRMLKSSNTSTT 308 (530)
Q Consensus 258 ~l~l~~~~~-~~~L----------------~~l~~~------------~~~~sII~IDeID~~~~~~~~r~~~~~~~~~~ 308 (530)
.++...+.. ...+ ++.+.. .....+|||||++.+-......-..
T Consensus 215 ~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~------- 287 (615)
T TIGR02903 215 EVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLK------- 287 (615)
T ss_pred EEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHH-------
Confidence 776654321 1111 111111 1235699999999862111100000
Q ss_pred cccccchhhhhhccccccccCCCCCCCCCCcchhhhHHH-HhhhccCCccCCCCCeEEEE-EeCCCCCCChhhhcCCcee
Q 009640 309 AKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSG-LLNFTDGLWSCCSEEKIIVF-TTNHRDSVDPALIRCGRMD 386 (530)
Q Consensus 309 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~-LLn~lDgl~s~~~~~~ivI~-TTN~~~~LDpALlRpGR~d 386 (530)
.+++ + .+.. .++.. +. ....... +-..++... ...+++|+ ||+.++.++++|++ ||.
T Consensus 288 -------~Le~-~-~v~~--~~~~~----~~-~~~~~~~~ik~~~~~~~---~~~~VLI~aTt~~~~~l~~aLrS--R~~ 346 (615)
T TIGR02903 288 -------VLED-K-RVEF--SSSYY----DP-DDPNVPKYIKKLFEEGA---PADFVLIGATTRDPEEINPALRS--RCA 346 (615)
T ss_pred -------HHhh-C-eEEe--eccee----cc-CCcccchhhhhhcccCc---cceEEEEEeccccccccCHHHHh--cee
Confidence 0000 0 0000 00000 00 0000001 111111111 22345554 66778899999998 887
Q ss_pred EEEEeCCCCHHHHHHHHHHhhCC
Q 009640 387 VHVSLGTCGPHAFKVLAKNYLGI 409 (530)
Q Consensus 387 ~~I~~~~p~~~~r~~i~~~~l~~ 409 (530)
.++|++.+.++...|++.++..
T Consensus 347 -~i~~~pls~edi~~Il~~~a~~ 368 (615)
T TIGR02903 347 -EVFFEPLTPEDIALIVLNAAEK 368 (615)
T ss_pred -EEEeCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999987653
No 151
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.25 E-value=7.5e-11 Score=122.34 Aligned_cols=130 Identities=23% Similarity=0.250 Sum_probs=91.9
Q ss_pred CceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccCChHHHH------HHH--Hh----cCC----C--eEEEEcCcc
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVTDNSELR------ALL--LQ----TTN----R--SIIVIEDID 289 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~~~~~L~------~l~--~~----~~~----~--sII~IDeID 289 (530)
.+.+||-||||||||+|++++|..++.+++.+.++.-...+++. ... .. ... . +|+++|||+
T Consensus 43 ~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEIn 122 (329)
T COG0714 43 GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEIN 122 (329)
T ss_pred CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccc
Confidence 46899999999999999999999999999999988654433321 111 00 111 1 499999999
Q ss_pred chhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccC-------Cc-cCCCC
Q 009640 290 CSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDG-------LW-SCCSE 361 (530)
Q Consensus 290 ~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg-------l~-s~~~~ 361 (530)
.. ...+.+.||..|+. .. -.-..
T Consensus 123 ra-------------------------------------------------~p~~q~aLl~~l~e~~vtv~~~~~~~~~~ 153 (329)
T COG0714 123 RA-------------------------------------------------PPEVQNALLEALEERQVTVPGLTTIRLPP 153 (329)
T ss_pred cC-------------------------------------------------CHHHHHHHHHHHhCcEEEECCcCCcCCCC
Confidence 75 12355666666654 11 11134
Q ss_pred CeEEEEEeC-----CCCCCChhhhcCCceeEEEEeCCC-CHHHHHHHHHHhhC
Q 009640 362 EKIIVFTTN-----HRDSVDPALIRCGRMDVHVSLGTC-GPHAFKVLAKNYLG 408 (530)
Q Consensus 362 ~~ivI~TTN-----~~~~LDpALlRpGR~d~~I~~~~p-~~~~r~~i~~~~l~ 408 (530)
..+||+|+| ....|++|+++ ||-..++++|| ...+...+.....+
T Consensus 154 ~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v~yp~~~~e~~~i~~~~~~ 204 (329)
T COG0714 154 PFIVIATQNPGEYEGTYPLPEALLD--RFLLRIYVDYPDSEEEERIILARVGG 204 (329)
T ss_pred CCEEEEccCccccCCCcCCCHHHHh--hEEEEEecCCCCchHHHHHHHHhCcc
Confidence 567888889 45578999999 99999999999 55556666555554
No 152
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.23 E-value=8e-11 Score=123.38 Aligned_cols=70 Identities=17% Similarity=0.220 Sum_probs=50.9
Q ss_pred cccCChhhhHHHHHHHHHHHcChhhHhhhcCC-CCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCcc
Q 009640 195 TLALEPQLKKQITEDLTAFANGKEFYHRVGRA-WKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKV 264 (530)
Q Consensus 195 ~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~-~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~ 264 (530)
.|+|+++.|+.+...+.....+.........+ .+.++||+||||||||++++++|..++.+++.++.+.+
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f 86 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF 86 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhh
Confidence 37899999999988775432211111111111 25789999999999999999999999999999986543
No 153
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.22 E-value=2.1e-10 Score=132.14 Aligned_cols=156 Identities=17% Similarity=0.271 Sum_probs=106.7
Q ss_pred ccccCChhhhHHHHHHHHHHHcChhhHhhhcC-CCCce-EEEECCCCCChhHHHHHHHHHc---CCcEEEEecCccCChH
Q 009640 194 ETLALEPQLKKQITEDLTAFANGKEFYHRVGR-AWKRG-YLLYGPPGSGKSSLIAAMANYL---CYDVYDLELTKVTDNS 268 (530)
Q Consensus 194 ~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~-~~~rG-~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~~~~~~~ 268 (530)
+.|+|+++..+.|.+.+.....+ +.. ..+.| +||+||||||||.||+++|..+ ...++.++++.+....
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~g------l~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~ 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAG------LEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAH 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcC------CCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhh
Confidence 46788999888888888665321 111 12345 8999999999999999999998 4467777776653221
Q ss_pred H-------------------HHHHHHhcCCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccC
Q 009640 269 E-------------------LRALLLQTTNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTC 329 (530)
Q Consensus 269 ~-------------------L~~l~~~~~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 329 (530)
. |...+.+ ...|||+|||||.+-
T Consensus 640 ~~~~l~g~~~gyvg~~~~g~L~~~v~~-~p~svvllDEieka~------------------------------------- 681 (852)
T TIGR03345 640 TVSRLKGSPPGYVGYGEGGVLTEAVRR-KPYSVVLLDEVEKAH------------------------------------- 681 (852)
T ss_pred hhccccCCCCCcccccccchHHHHHHh-CCCcEEEEechhhcC-------------------------------------
Confidence 1 2233332 567999999999751
Q ss_pred CCCCCCCCCcchhhhHHHHhhhccCCccCC-------CCCeEEEEEeCCCC-----------------------------
Q 009640 330 GNNNNNNGEESGRVTLSGLLNFTDGLWSCC-------SEEKIIVFTTNHRD----------------------------- 373 (530)
Q Consensus 330 ~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~-------~~~~ivI~TTN~~~----------------------------- 373 (530)
....+.|+..+|.-.-.. -.+.+||+|||...
T Consensus 682 ------------~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 749 (852)
T TIGR03345 682 ------------PDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLK 749 (852)
T ss_pred ------------HHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHH
Confidence 224556666665321000 13578999999521
Q ss_pred CCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhC
Q 009640 374 SVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLG 408 (530)
Q Consensus 374 ~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~ 408 (530)
.+.|+|+. |++ .|.|.+.+.++...|+...+.
T Consensus 750 ~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~L~ 781 (852)
T TIGR03345 750 VFKPAFLG--RMT-VIPYLPLDDDVLAAIVRLKLD 781 (852)
T ss_pred hccHHHhc--cee-EEEeCCCCHHHHHHHHHHHHH
Confidence 14577777 998 789999999999999988764
No 154
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.20 E-value=4.4e-10 Score=129.81 Aligned_cols=161 Identities=17% Similarity=0.312 Sum_probs=108.1
Q ss_pred cccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecCccCChHH
Q 009640 193 FETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELTKVTDNSE 269 (530)
Q Consensus 193 f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~~~~~~~~ 269 (530)
++.|+|++...+.|...+......-. .-+.| ...+||+||||||||++|++||+.+ +..++.++++.+.....
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~---~~~~p-~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~ 642 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLS---DPNRP-IGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHS 642 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhccc---CCCCC-CceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhh
Confidence 55688988888888887765432100 00001 1258999999999999999999987 45677777766543322
Q ss_pred HHHHH---------------Hh---cCCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCC
Q 009640 270 LRALL---------------LQ---TTNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGN 331 (530)
Q Consensus 270 L~~l~---------------~~---~~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 331 (530)
..+++ .. ....+||+|||||.+-
T Consensus 643 ~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~--------------------------------------- 683 (857)
T PRK10865 643 VSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAH--------------------------------------- 683 (857)
T ss_pred HHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCC---------------------------------------
Confidence 32222 11 1234899999999761
Q ss_pred CCCCCCCcchhhhHHHHhhhccCCc-cC------CCCCeEEEEEeCCC-------------------------CCCChhh
Q 009640 332 NNNNNGEESGRVTLSGLLNFTDGLW-SC------CSEEKIIVFTTNHR-------------------------DSVDPAL 379 (530)
Q Consensus 332 ~~~~~~~~~~~~~ls~LLn~lDgl~-s~------~~~~~ivI~TTN~~-------------------------~~LDpAL 379 (530)
....+.|++.+|.-. .. .-.+.+||+|||.. ..+.|+|
T Consensus 684 ----------~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEL 753 (857)
T PRK10865 684 ----------PDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEF 753 (857)
T ss_pred ----------HHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHH
Confidence 224566777665211 00 01235889999973 1345788
Q ss_pred hcCCceeEEEEeCCCCHHHHHHHHHHhhC
Q 009640 380 IRCGRMDVHVSLGTCGPHAFKVLAKNYLG 408 (530)
Q Consensus 380 lRpGR~d~~I~~~~p~~~~r~~i~~~~l~ 408 (530)
+. |+|..|.|.+++.+....|++.++.
T Consensus 754 ln--Rld~iivF~PL~~edl~~Iv~~~L~ 780 (857)
T PRK10865 754 IN--RIDEVVVFHPLGEQHIASIAQIQLQ 780 (857)
T ss_pred HH--hCCeeEecCCCCHHHHHHHHHHHHH
Confidence 88 9999999999999999999988874
No 155
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.19 E-value=5.1e-10 Score=129.62 Aligned_cols=160 Identities=18% Similarity=0.308 Sum_probs=108.0
Q ss_pred ccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecCccCChHHH
Q 009640 194 ETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELTKVTDNSEL 270 (530)
Q Consensus 194 ~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~~~~~~~~L 270 (530)
..|+|++...+.|.+.+......-. . ...+...+||+||||||||++|++||..+ +.+++.++++.......+
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~---~-~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~ 640 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLS---D-PNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSV 640 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCC---C-CCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchH
Confidence 5688899888888887776432100 0 00112358999999999999999999988 467888887765433222
Q ss_pred HHH---------------HH---hcCCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCC
Q 009640 271 RAL---------------LL---QTTNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNN 332 (530)
Q Consensus 271 ~~l---------------~~---~~~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 332 (530)
.++ |. .....+||+|||||.+
T Consensus 641 ~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka----------------------------------------- 679 (852)
T TIGR03346 641 ARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKA----------------------------------------- 679 (852)
T ss_pred HHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccC-----------------------------------------
Confidence 222 11 1234589999999976
Q ss_pred CCCCCCcchhhhHHHHhhhccCCc--cC-----CCCCeEEEEEeCCCCC-------------------------CChhhh
Q 009640 333 NNNNGEESGRVTLSGLLNFTDGLW--SC-----CSEEKIIVFTTNHRDS-------------------------VDPALI 380 (530)
Q Consensus 333 ~~~~~~~~~~~~ls~LLn~lDgl~--s~-----~~~~~ivI~TTN~~~~-------------------------LDpALl 380 (530)
.....+.||+.+|.-. .. .-.+.|||+|||.... +.|.|+
T Consensus 680 --------~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~ 751 (852)
T TIGR03346 680 --------HPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFL 751 (852)
T ss_pred --------CHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHh
Confidence 1234566777774221 00 0134689999998321 345666
Q ss_pred cCCceeEEEEeCCCCHHHHHHHHHHhhC
Q 009640 381 RCGRMDVHVSLGTCGPHAFKVLAKNYLG 408 (530)
Q Consensus 381 RpGR~d~~I~~~~p~~~~r~~i~~~~l~ 408 (530)
. |+|..|.|.+++.+....|+..++.
T Consensus 752 ~--Rid~IivF~PL~~e~l~~I~~l~L~ 777 (852)
T TIGR03346 752 N--RIDEIVVFHPLGREQIARIVEIQLG 777 (852)
T ss_pred c--CcCeEEecCCcCHHHHHHHHHHHHH
Confidence 6 9999999999999999999987764
No 156
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.19 E-value=4.4e-10 Score=116.40 Aligned_cols=153 Identities=20% Similarity=0.293 Sum_probs=101.0
Q ss_pred CcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcC-------CcE--------
Q 009640 192 TFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLC-------YDV-------- 256 (530)
Q Consensus 192 ~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~-------~~i-------- 256 (530)
.|..|+|++++|..+.-.+..+ ...++||.||||||||++++++++.+. .++
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~-------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP-------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC-------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 5889999999988776544321 135799999999999999999998772 111
Q ss_pred -------------------------EEEecC----ccCChHHHHHHHH-----------hcCCCeEEEEcCccchhhhhh
Q 009640 257 -------------------------YDLELT----KVTDNSELRALLL-----------QTTNRSIIVIEDIDCSVDLTA 296 (530)
Q Consensus 257 -------------------------~~l~l~----~~~~~~~L~~l~~-----------~~~~~sII~IDeID~~~~~~~ 296 (530)
.++.++ .+.+.-++.+.+. ......+||||||+.+-
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~---- 144 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLE---- 144 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCC----
Confidence 111110 1111223333221 11345799999999861
Q ss_pred hhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhcc---------CCccCCCCCeEEEE
Q 009640 297 DRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTD---------GLWSCCSEEKIIVF 367 (530)
Q Consensus 297 ~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lD---------gl~s~~~~~~ivI~ 367 (530)
..+.+.|++.|+ |.........++|+
T Consensus 145 ---------------------------------------------~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~ivia 179 (337)
T TIGR02030 145 ---------------------------------------------DHLVDVLLDVAASGWNVVEREGISIRHPARFVLVG 179 (337)
T ss_pred ---------------------------------------------HHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEe
Confidence 223445555553 33222234567777
Q ss_pred EeCCCC-CCChhhhcCCceeEEEEeCCCCH-HHHHHHHHHhhC
Q 009640 368 TTNHRD-SVDPALIRCGRMDVHVSLGTCGP-HAFKVLAKNYLG 408 (530)
Q Consensus 368 TTN~~~-~LDpALlRpGR~d~~I~~~~p~~-~~r~~i~~~~l~ 408 (530)
|+|..+ .|+++|+. ||..+|.+++|+. +++..|+++...
T Consensus 180 t~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~eIL~~~~~ 220 (337)
T TIGR02030 180 SGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRVEIVERRTE 220 (337)
T ss_pred ccccccCCCCHHHHh--hcceEEECCCCCCHHHHHHHHHhhhh
Confidence 888655 69999999 9999999999976 888999987544
No 157
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.18 E-value=1.2e-10 Score=111.42 Aligned_cols=195 Identities=15% Similarity=0.277 Sum_probs=123.8
Q ss_pred CCCccccCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc-C----
Q 009640 179 DSGWVSVPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL-C---- 253 (530)
Q Consensus 179 ~~~w~~~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l-~---- 253 (530)
+..| +..++|..+.+++|.++..+.+. -+..... -..+++.||||||||+-+.++|++| |
T Consensus 14 ~l~w--VeKYrP~~l~dIVGNe~tv~rl~----via~~gn---------mP~liisGpPG~GKTTsi~~LAr~LLG~~~k 78 (333)
T KOG0991|consen 14 QLPW--VEKYRPSVLQDIVGNEDTVERLS----VIAKEGN---------MPNLIISGPPGTGKTTSILCLARELLGDSYK 78 (333)
T ss_pred cchH--HHhhCchHHHHhhCCHHHHHHHH----HHHHcCC---------CCceEeeCCCCCchhhHHHHHHHHHhChhhh
Confidence 3458 88999999999999998655443 2332221 2479999999999999999999987 3
Q ss_pred CcEEEEecCccCChHHHH---HHHHhc------CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhcccc
Q 009640 254 YDVYDLELTKVTDNSELR---ALLLQT------TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRI 324 (530)
Q Consensus 254 ~~i~~l~l~~~~~~~~L~---~l~~~~------~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~ 324 (530)
--+..++.++-.+-.-+| +.|.+. ...-||++||.|++-. +
T Consensus 79 e~vLELNASdeRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~--g---------------------------- 128 (333)
T KOG0991|consen 79 EAVLELNASDERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTA--G---------------------------- 128 (333)
T ss_pred hHhhhccCccccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhh--H----------------------------
Confidence 234566666655444443 345543 1335999999998721 0
Q ss_pred ccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHH
Q 009640 325 ASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAK 404 (530)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~ 404 (530)
....|-..|+=..+ ..-+.+++|..+++-+.+.+ |+-. -
T Consensus 129 -------------------AQQAlRRtMEiyS~----ttRFalaCN~s~KIiEPIQS--RCAi----------------L 167 (333)
T KOG0991|consen 129 -------------------AQQALRRTMEIYSN----TTRFALACNQSEKIIEPIQS--RCAI----------------L 167 (333)
T ss_pred -------------------HHHHHHHHHHHHcc----cchhhhhhcchhhhhhhHHh--hhHh----------------h
Confidence 11223333332222 23477788988887666655 3311 1
Q ss_pred HhhCCcCccchHHHHHHHHH-hCCCCCHHHHHHHHHHhccCHHHHHHHHHHHHHHhh
Q 009640 405 NYLGIESHHALFDVVESCIR-AGGALTPAQIGEVLLRNRGNVDLAMKEVVSAMQAKI 460 (530)
Q Consensus 405 ~~l~~~~~~~~~~~i~~l~~-~~~~~spadi~~~l~~~~~d~~~al~~l~~~l~~~~ 460 (530)
+|-...+.. ....+.+.++ +...||+.-+..++..+.+|++.|++.+........
T Consensus 168 Rysklsd~q-iL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnLQst~~g~g 223 (333)
T KOG0991|consen 168 RYSKLSDQQ-ILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNLQSTVNGFG 223 (333)
T ss_pred hhcccCHHH-HHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHHHHHHHHhcccc
Confidence 122222222 2222333322 468899999999999999999999999887765443
No 158
>PRK09087 hypothetical protein; Validated
Probab=99.18 E-value=5.2e-10 Score=109.87 Aligned_cols=152 Identities=15% Similarity=0.121 Sum_probs=90.7
Q ss_pred cCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCcc
Q 009640 185 VPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKV 264 (530)
Q Consensus 185 ~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~ 264 (530)
+...+..+|++++..+.-.. +...+..+. . ...+.++||||+|+|||||++++|+..+..+++.. .+
T Consensus 12 ~~~~~~~~~~~Fi~~~~N~~-a~~~l~~~~---~-------~~~~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~--~~ 78 (226)
T PRK09087 12 FSHDPAYGRDDLLVTESNRA-AVSLVDHWP---N-------WPSPVVVLAGPVGSGKTHLASIWREKSDALLIHPN--EI 78 (226)
T ss_pred CCCCCCCChhceeecCchHH-HHHHHHhcc---c-------CCCCeEEEECCCCCCHHHHHHHHHHhcCCEEecHH--Hc
Confidence 34456678999875332221 222222211 1 01234899999999999999999998776655442 21
Q ss_pred CChHHHHHHHHhcCCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhh
Q 009640 265 TDNSELRALLLQTTNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVT 344 (530)
Q Consensus 265 ~~~~~L~~l~~~~~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (530)
. ..-+ .... ..+|+|||+|.+- . .+..
T Consensus 79 ~-~~~~----~~~~-~~~l~iDDi~~~~--------------------------------------------~---~~~~ 105 (226)
T PRK09087 79 G-SDAA----NAAA-EGPVLIEDIDAGG--------------------------------------------F---DETG 105 (226)
T ss_pred c-hHHH----Hhhh-cCeEEEECCCCCC--------------------------------------------C---CHHH
Confidence 1 1111 1111 2588899999751 0 1122
Q ss_pred HHHHhhhccCCccCCCCCeEEEEEeCCCCC---CChhhhcCCcee--EEEEeCCCCHHHHHHHHHHhhCC
Q 009640 345 LSGLLNFTDGLWSCCSEEKIIVFTTNHRDS---VDPALIRCGRMD--VHVSLGTCGPHAFKVLAKNYLGI 409 (530)
Q Consensus 345 ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~---LDpALlRpGR~d--~~I~~~~p~~~~r~~i~~~~l~~ 409 (530)
+-.++|.+ .. .+..+||.++..|.. ..|.|+. |+. ..+++..|+.+.+..+++..+..
T Consensus 106 lf~l~n~~---~~--~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~ 168 (226)
T PRK09087 106 LFHLINSV---RQ--AGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFAD 168 (226)
T ss_pred HHHHHHHH---Hh--CCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHH
Confidence 34444443 32 133444444444442 3688988 775 88999999999999999988754
No 159
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.17 E-value=3.8e-10 Score=125.13 Aligned_cols=206 Identities=20% Similarity=0.267 Sum_probs=127.9
Q ss_pred CCccccCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEE-
Q 009640 180 SGWVSVPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYD- 258 (530)
Q Consensus 180 ~~w~~~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~- 258 (530)
..| +..+.|.++++|+++++..+.+...+..... +....+.++|+||||||||++++++|++++.+++.
T Consensus 72 ~pW--~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~--------~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew 141 (637)
T TIGR00602 72 EPW--VEKYKPETQHELAVHKKKIEEVETWLKAQVL--------ENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEW 141 (637)
T ss_pred Cch--HHHhCCCCHHHhcCcHHHHHHHHHHHHhccc--------ccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHH
Confidence 368 7789999999999999888776665543221 12223459999999999999999999999876533
Q ss_pred EecC--------------------cc-CChHHHHHHHHhc------------CCCeEEEEcCccchhhhhhhhhhcccCC
Q 009640 259 LELT--------------------KV-TDNSELRALLLQT------------TNRSIIVIEDIDCSVDLTADRMLKSSNT 305 (530)
Q Consensus 259 l~l~--------------------~~-~~~~~L~~l~~~~------------~~~sII~IDeID~~~~~~~~r~~~~~~~ 305 (530)
++.. .+ .....+..++..+ ..+.||||||||.++.
T Consensus 142 ~npv~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~------------ 209 (637)
T TIGR00602 142 SNPTLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFY------------ 209 (637)
T ss_pred hhhhhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhch------------
Confidence 1110 00 1223344444432 3567999999998741
Q ss_pred ccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhh--hccCCccCCCCCeEEEEEeC-CCC---------
Q 009640 306 STTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLN--FTDGLWSCCSEEKIIVFTTN-HRD--------- 373 (530)
Q Consensus 306 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn--~lDgl~s~~~~~~ivI~TTN-~~~--------- 373 (530)
. ....+..+|. ..+ .....+|+++| .+.
T Consensus 210 ---------------------------------r-~~~~lq~lLr~~~~e------~~~~pLI~I~TE~~~~~~~~~~~~ 249 (637)
T TIGR00602 210 ---------------------------------R-DTRALHEILRWKYVS------IGRCPLVFIITESLEGDNNQRRLL 249 (637)
T ss_pred ---------------------------------h-hHHHHHHHHHHHhhc------CCCceEEEEecCCccccccccccc
Confidence 0 0113344444 221 12233444333 221
Q ss_pred -----CCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCccchHHHHHHHHHhCCCCCHHHHHHHHHHhccCHHHH
Q 009640 374 -----SVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHHALFDVVESCIRAGGALTPAQIGEVLLRNRGNVDLA 448 (530)
Q Consensus 374 -----~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~i~~l~~~~~~~spadi~~~l~~~~~d~~~a 448 (530)
.|.++++..-|+ .+|.|.+.+....+..++..+..+... .. ....--++..|..++..+.+|.+.|
T Consensus 250 f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~-~~-------~~~~~p~~~~l~~I~~~s~GDiRsA 320 (637)
T TIGR00602 250 FPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKK-NG-------EKIKVPKKTSVELLCQGCSGDIRSA 320 (637)
T ss_pred cchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhc-cc-------cccccCCHHHHHHHHHhCCChHHHH
Confidence 134788843355 379999999999888887776543211 00 0001125677888888888999999
Q ss_pred HHHHHHHH
Q 009640 449 MKEVVSAM 456 (530)
Q Consensus 449 l~~l~~~l 456 (530)
+..|.-+.
T Consensus 321 In~LQf~~ 328 (637)
T TIGR00602 321 INSLQFSS 328 (637)
T ss_pred HHHHHHHH
Confidence 98887553
No 160
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.15 E-value=7e-10 Score=128.06 Aligned_cols=159 Identities=16% Similarity=0.272 Sum_probs=105.4
Q ss_pred ccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecCccCChHH-
Q 009640 194 ETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELTKVTDNSE- 269 (530)
Q Consensus 194 ~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~~~~~~~~- 269 (530)
+.|+|+++..+.|...+......- ..-+.| ...+||+||||||||+||+++|..+ ..+++.++++++.....
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl---~~~~~p-~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~ 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGL---KNPNRP-IASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTV 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcc---cCCCCC-ceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccH
Confidence 557888888888877765432110 000111 1248999999999999999999988 35677777766532222
Q ss_pred ------------------HHHHHHhcCCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCC
Q 009640 270 ------------------LRALLLQTTNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGN 331 (530)
Q Consensus 270 ------------------L~~l~~~~~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 331 (530)
|...+. ....+||+|||||.+-
T Consensus 585 ~~l~g~~~gyvg~~~~~~l~~~~~-~~p~~VvllDeieka~--------------------------------------- 624 (821)
T CHL00095 585 SKLIGSPPGYVGYNEGGQLTEAVR-KKPYTVVLFDEIEKAH--------------------------------------- 624 (821)
T ss_pred HHhcCCCCcccCcCccchHHHHHH-hCCCeEEEECChhhCC---------------------------------------
Confidence 222222 1345999999999861
Q ss_pred CCCCCCCcchhhhHHHHhhhccCCcc--C-----CCCCeEEEEEeCCCCC------------------------------
Q 009640 332 NNNNNGEESGRVTLSGLLNFTDGLWS--C-----CSEEKIIVFTTNHRDS------------------------------ 374 (530)
Q Consensus 332 ~~~~~~~~~~~~~ls~LLn~lDgl~s--~-----~~~~~ivI~TTN~~~~------------------------------ 374 (530)
....+.||..+|.-.- . .-.+.|||+|||....
T Consensus 625 ----------~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~ 694 (821)
T CHL00095 625 ----------PDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLV 694 (821)
T ss_pred ----------HHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHH
Confidence 2345667777763210 0 0145789999995321
Q ss_pred -------CChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhC
Q 009640 375 -------VDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLG 408 (530)
Q Consensus 375 -------LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~ 408 (530)
+.|.|+. |+|..|.|.+.+.++...|+...+.
T Consensus 695 ~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~Iv~~~l~ 733 (821)
T CHL00095 695 NEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEIAEIMLK 733 (821)
T ss_pred HHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 2345666 9999999999999999999988764
No 161
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.14 E-value=1.4e-09 Score=112.55 Aligned_cols=124 Identities=21% Similarity=0.303 Sum_probs=95.1
Q ss_pred CceEEEECCCCCChhHHHHHHHHHcCC------------------------cEEEEecCc---cCChHHHHHHHHhc---
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYLCY------------------------DVYDLELTK---VTDNSELRALLLQT--- 277 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l~~------------------------~i~~l~l~~---~~~~~~L~~l~~~~--- 277 (530)
+.+|||+||+|+||+++|.++|+.+.. |++.+.... ...-+++|.+....
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~~ 101 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQT 101 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhhc
Confidence 458999999999999999999998843 556665432 22445677765543
Q ss_pred ---CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccC
Q 009640 278 ---TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDG 354 (530)
Q Consensus 278 ---~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg 354 (530)
...-|++||++|.+ +....+.||+.|+.
T Consensus 102 ~~~~~~kv~iI~~a~~m-------------------------------------------------~~~aaNaLLK~LEE 132 (328)
T PRK05707 102 AQLGGRKVVLIEPAEAM-------------------------------------------------NRNAANALLKSLEE 132 (328)
T ss_pred cccCCCeEEEECChhhC-------------------------------------------------CHHHHHHHHHHHhC
Confidence 24568899999987 12356789999985
Q ss_pred CccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhh
Q 009640 355 LWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYL 407 (530)
Q Consensus 355 l~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l 407 (530)
- .++.++|++|+.++.|.|.+++ |+.. |.|+.|+.++....+....
T Consensus 133 P----p~~~~fiL~t~~~~~ll~TI~S--Rc~~-~~~~~~~~~~~~~~L~~~~ 178 (328)
T PRK05707 133 P----SGDTVLLLISHQPSRLLPTIKS--RCQQ-QACPLPSNEESLQWLQQAL 178 (328)
T ss_pred C----CCCeEEEEEECChhhCcHHHHh--hcee-eeCCCcCHHHHHHHHHHhc
Confidence 3 3578899999999999999998 8755 8999999998887776554
No 162
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=2.9e-09 Score=111.57 Aligned_cols=154 Identities=18% Similarity=0.277 Sum_probs=109.5
Q ss_pred ccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCc-----EEEEecCccCChH
Q 009640 194 ETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYD-----VYDLELTKVTDNS 268 (530)
Q Consensus 194 ~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~-----i~~l~l~~~~~~~ 268 (530)
+.+..-++..+++...+..++.+.. |..+++|||||||||..++-++.++... ++.+++....+..
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~---------p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~ 87 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGER---------PSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPY 87 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCC---------CccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHH
Confidence 3477788888888888877776543 3469999999999999999999998444 7777766553322
Q ss_pred H-------------------------HHHHHHhcCCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccc
Q 009640 269 E-------------------------LRALLLQTTNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSR 323 (530)
Q Consensus 269 ~-------------------------L~~l~~~~~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~ 323 (530)
. +.+.+.......||++||+|.+++
T Consensus 88 ~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~------------------------------ 137 (366)
T COG1474 88 QVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVD------------------------------ 137 (366)
T ss_pred HHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhcc------------------------------
Confidence 2 122222234568999999999852
Q ss_pred cccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCC---CCCChhhhcCCce-eEEEEeCCCCHHHH
Q 009640 324 IASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHR---DSVDPALIRCGRM-DVHVSLGTCGPHAF 399 (530)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~---~~LDpALlRpGR~-d~~I~~~~p~~~~r 399 (530)
.. ..+|-.|+..-+-. ...+++|+.+|.. +.|||.+.+ ++ ..+|.|++.+.++.
T Consensus 138 --------------~~--~~~LY~L~r~~~~~----~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el 195 (366)
T COG1474 138 --------------KD--GEVLYSLLRAPGEN----KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEEL 195 (366)
T ss_pred --------------cc--chHHHHHHhhcccc----ceeEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHH
Confidence 00 14555666554433 3457888888875 578998887 44 35699999999999
Q ss_pred HHHHHHhhC
Q 009640 400 KVLAKNYLG 408 (530)
Q Consensus 400 ~~i~~~~l~ 408 (530)
..|+..-..
T Consensus 196 ~~Il~~R~~ 204 (366)
T COG1474 196 YDILRERVE 204 (366)
T ss_pred HHHHHHHHH
Confidence 999987654
No 163
>PRK08116 hypothetical protein; Validated
Probab=99.12 E-value=2.5e-10 Score=114.94 Aligned_cols=150 Identities=17% Similarity=0.243 Sum_probs=88.6
Q ss_pred CCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecCccCC
Q 009640 190 PSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELTKVTD 266 (530)
Q Consensus 190 ~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~~~~~ 266 (530)
..+|+++...+... .+......|.++- .... ...+|++||||||||||+|+.|||+++ +..++.++...+..
T Consensus 81 ~~tFdnf~~~~~~~-~a~~~a~~y~~~~---~~~~-~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~ 155 (268)
T PRK08116 81 NSTFENFLFDKGSE-KAYKIARKYVKKF---EEMK-KENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLN 155 (268)
T ss_pred hcchhcccCChHHH-HHHHHHHHHHHHH---Hhhc-cCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHH
Confidence 34677765444432 2333344444321 1111 123689999999999999999999997 67777777554311
Q ss_pred ----------hHHHHHHHHhcCCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCC
Q 009640 267 ----------NSELRALLLQTTNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNN 336 (530)
Q Consensus 267 ----------~~~L~~l~~~~~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 336 (530)
......++....+..+|+|||+...-
T Consensus 156 ~i~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~e~-------------------------------------------- 191 (268)
T PRK08116 156 RIKSTYKSSGKEDENEIIRSLVNADLLILDDLGAER-------------------------------------------- 191 (268)
T ss_pred HHHHHHhccccccHHHHHHHhcCCCEEEEecccCCC--------------------------------------------
Confidence 01122344445667899999996420
Q ss_pred CCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCC-CC----CChhhhcCCce---eEEEEeCCCCH
Q 009640 337 GEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHR-DS----VDPALIRCGRM---DVHVSLGTCGP 396 (530)
Q Consensus 337 ~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~-~~----LDpALlRpGR~---d~~I~~~~p~~ 396 (530)
. .......|.+.||.... .+..+|+|||.+ +. +++++.. |+ ...|.|.-+|.
T Consensus 192 ~---t~~~~~~l~~iin~r~~---~~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 192 D---TEWAREKVYNIIDSRYR---KGLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY 251 (268)
T ss_pred C---CHHHHHHHHHHHHHHHH---CCCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh
Confidence 0 11233455666664432 345688899975 22 5777776 64 45567766665
No 164
>PRK12377 putative replication protein; Provisional
Probab=99.08 E-value=1.2e-09 Score=108.47 Aligned_cols=96 Identities=18% Similarity=0.293 Sum_probs=61.2
Q ss_pred CCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecCccC
Q 009640 189 HPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELTKVT 265 (530)
Q Consensus 189 ~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~~~~ 265 (530)
...+|+++....+-.+.+...+..|...-. . ...+++|+||||||||+|+.|||+++ +..+..+...++.
T Consensus 69 ~~~tFdnf~~~~~~~~~a~~~a~~~a~~~~---~----~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~ 141 (248)
T PRK12377 69 RKCSFANYQVQNDGQRYALSQAKSIADELM---T----GCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVM 141 (248)
T ss_pred ccCCcCCcccCChhHHHHHHHHHHHHHHHH---h----cCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHH
Confidence 444788775433333333333433332211 0 13689999999999999999999998 5666666654432
Q ss_pred C--------hHHHHHHHHhcCCCeEEEEcCccch
Q 009640 266 D--------NSELRALLLQTTNRSIIVIEDIDCS 291 (530)
Q Consensus 266 ~--------~~~L~~l~~~~~~~sII~IDeID~~ 291 (530)
. .....+++.......+|+||||...
T Consensus 142 ~~l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~~ 175 (248)
T PRK12377 142 SRLHESYDNGQSGEKFLQELCKVDLLVLDEIGIQ 175 (248)
T ss_pred HHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCC
Confidence 1 1123355666788999999999864
No 165
>PRK09183 transposase/IS protein; Provisional
Probab=99.08 E-value=4.2e-10 Score=112.79 Aligned_cols=128 Identities=13% Similarity=0.161 Sum_probs=76.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCCCccccCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhc
Q 009640 145 LLSAYLDHVTSRAEEFERVSRERRLFTNNGHGSYDSGWVSVPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVG 224 (530)
Q Consensus 145 vl~~yl~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g 224 (530)
-..+||..+++.+...++.++..+..+.+.++.. ..-....|+...+. .+..+..+.. -.+
T Consensus 38 ~~~e~l~~ll~~E~~~R~~~~~~~~~k~a~~p~~-------~~l~~fd~~~~~~~---~~~~i~~L~~----~~~----- 98 (259)
T PRK09183 38 SYMDFLEHLLHEEKLARHQRKQAMYTRMAAFPAV-------KTFEEYDFTFATGA---PQKQLQSLRS----LSF----- 98 (259)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC-------CcHhhcccccCCCC---CHHHHHHHhc----CCc-----
Confidence 3568999999998888888888888877655431 00011111211121 1122222221 111
Q ss_pred CCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecCccCC-------hHHHHHHHHh-cCCCeEEEEcCccch
Q 009640 225 RAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELTKVTD-------NSELRALLLQ-TTNRSIIVIEDIDCS 291 (530)
Q Consensus 225 ~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~~~~~-------~~~L~~l~~~-~~~~sII~IDeID~~ 291 (530)
+....+++|+||||||||+|+.|+|+.+ |+.+..++...+.. ...+...+.. ...+.+++|||++..
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYL 176 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHhcCCCEEEEcccccC
Confidence 1113579999999999999999998775 66666665443321 1123344544 467789999999864
No 166
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.07 E-value=2e-09 Score=114.19 Aligned_cols=27 Identities=37% Similarity=0.614 Sum_probs=24.5
Q ss_pred CceEEEECCCCCChhHHHHHHHHHcCC
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYLCY 254 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l~~ 254 (530)
++.++|+||||||||++|+++|+.++.
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~ 220 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTG 220 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcC
Confidence 468999999999999999999998853
No 167
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.06 E-value=1.1e-09 Score=96.51 Aligned_cols=65 Identities=26% Similarity=0.417 Sum_probs=48.0
Q ss_pred CceEEEECCCCCChhHHHHHHHHHcCCc---EEEEecCccC--------------------ChHHHHHHHHhc--CCCeE
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYLCYD---VYDLELTKVT--------------------DNSELRALLLQT--TNRSI 282 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l~~~---i~~l~l~~~~--------------------~~~~L~~l~~~~--~~~sI 282 (530)
...++|+||||||||++++++|..+... ++.++..... ....+..++..+ ..+.|
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 3579999999999999999999999775 7777655432 122344444444 34699
Q ss_pred EEEcCccchh
Q 009640 283 IVIEDIDCSV 292 (530)
Q Consensus 283 I~IDeID~~~ 292 (530)
|+|||++.+.
T Consensus 82 iiiDei~~~~ 91 (148)
T smart00382 82 LILDEITSLL 91 (148)
T ss_pred EEEECCcccC
Confidence 9999999874
No 168
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.05 E-value=6.4e-09 Score=107.02 Aligned_cols=147 Identities=18% Similarity=0.240 Sum_probs=104.6
Q ss_pred CcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCC-----------------
Q 009640 192 TFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCY----------------- 254 (530)
Q Consensus 192 ~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~----------------- 254 (530)
.|++|+|++++++.+...+.. . ..+..||||||+|+||+++|.++|+.+-.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~----~--------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ----N--------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh----C--------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 488999999988877775532 1 11458999999999999999999998722
Q ss_pred -cEEEEecCcc-----------------------CChHHHHHHHHhc------CCCeEEEEcCccchhhhhhhhhhcccC
Q 009640 255 -DVYDLELTKV-----------------------TDNSELRALLLQT------TNRSIIVIEDIDCSVDLTADRMLKSSN 304 (530)
Q Consensus 255 -~i~~l~l~~~-----------------------~~~~~L~~l~~~~------~~~sII~IDeID~~~~~~~~r~~~~~~ 304 (530)
|++.+..... ..-..++.+.... ...-|++||++|.+-
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~------------ 137 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN------------ 137 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC------------
Confidence 2233322110 0112445553322 346799999998861
Q ss_pred CccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCc
Q 009640 305 TSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGR 384 (530)
Q Consensus 305 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR 384 (530)
....+.||..|+.. + ..++|++|+.++.|-|.+++ |
T Consensus 138 -------------------------------------~~aaNaLLK~LEEP----p-~~~fILi~~~~~~Ll~TI~S--R 173 (314)
T PRK07399 138 -------------------------------------EAAANALLKTLEEP----G-NGTLILIAPSPESLLPTIVS--R 173 (314)
T ss_pred -------------------------------------HHHHHHHHHHHhCC----C-CCeEEEEECChHhCcHHHHh--h
Confidence 22456899999854 2 34688889999999999998 7
Q ss_pred eeEEEEeCCCCHHHHHHHHHHhh
Q 009640 385 MDVHVSLGTCGPHAFKVLAKNYL 407 (530)
Q Consensus 385 ~d~~I~~~~p~~~~r~~i~~~~l 407 (530)
. ..|.|+.++.++...++....
T Consensus 174 c-q~i~f~~l~~~~~~~~L~~~~ 195 (314)
T PRK07399 174 C-QIIPFYRLSDEQLEQVLKRLG 195 (314)
T ss_pred c-eEEecCCCCHHHHHHHHHHhh
Confidence 5 669999999999988888764
No 169
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.05 E-value=7.4e-09 Score=107.11 Aligned_cols=65 Identities=23% Similarity=0.283 Sum_probs=52.8
Q ss_pred CCCcc-cccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCC-------cEEEEec
Q 009640 190 PSTFE-TLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCY-------DVYDLEL 261 (530)
Q Consensus 190 ~~~f~-~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~-------~i~~l~l 261 (530)
-.-|+ ++.|+++.++++.+.+.....+. ...++.++|+||||||||||+.++|+.++. .+|.+..
T Consensus 46 y~~F~~~~~G~~~~i~~lv~~l~~~a~g~-------~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 46 YRFFDHDFFGMEEAIERFVNYFKSAAQGL-------EERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred ccccchhccCcHHHHHHHHHHHHHHHhcC-------CCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 33567 89999999999988777665321 123578999999999999999999999976 8999977
No 170
>PRK04132 replication factor C small subunit; Provisional
Probab=99.04 E-value=3.3e-09 Score=120.69 Aligned_cols=154 Identities=14% Similarity=0.150 Sum_probs=115.1
Q ss_pred EEEEC--CCCCChhHHHHHHHHHc-----CCcEEEEecCccCChHHHHHHHHhc----C----CCeEEEEcCccchhhhh
Q 009640 231 YLLYG--PPGSGKSSLIAAMANYL-----CYDVYDLELTKVTDNSELRALLLQT----T----NRSIIVIEDIDCSVDLT 295 (530)
Q Consensus 231 ~LL~G--PPGTGKTsLa~AiA~~l-----~~~i~~l~l~~~~~~~~L~~l~~~~----~----~~sII~IDeID~~~~~~ 295 (530)
.+..| |++.||||+|.|+|+++ +.+++.++.++..+-..+++++... + +.-||+|||+|.+-
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt--- 643 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALT--- 643 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCC---
Confidence 45568 99999999999999998 6689999999877777888776542 1 23699999999971
Q ss_pred hhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCC
Q 009640 296 ADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSV 375 (530)
Q Consensus 296 ~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~L 375 (530)
....+.|+..|+.. .....+|++||.++.+
T Consensus 644 ----------------------------------------------~~AQnALLk~lEep----~~~~~FILi~N~~~kI 673 (846)
T PRK04132 644 ----------------------------------------------QDAQQALRRTMEMF----SSNVRFILSCNYSSKI 673 (846)
T ss_pred ----------------------------------------------HHHHHHHHHHhhCC----CCCeEEEEEeCChhhC
Confidence 12356788888854 3457899999999999
Q ss_pred ChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCccchHHHHHHHHHhCCCCCHHHHHHHHHHhccCHHHHHHHHHHH
Q 009640 376 DPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHHALFDVVESCIRAGGALTPAQIGEVLLRNRGNVDLAMKEVVSA 455 (530)
Q Consensus 376 DpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~i~~l~~~~~~~spadi~~~l~~~~~d~~~al~~l~~~ 455 (530)
.|+|++ |+ ..+.|+.|+.++....++..+..+ ...+++..+..++..+.+|+..|+..+...
T Consensus 674 i~tIrS--RC-~~i~F~~ls~~~i~~~L~~I~~~E---------------gi~i~~e~L~~Ia~~s~GDlR~AIn~Lq~~ 735 (846)
T PRK04132 674 IEPIQS--RC-AIFRFRPLRDEDIAKRLRYIAENE---------------GLELTEEGLQAILYIAEGDMRRAINILQAA 735 (846)
T ss_pred chHHhh--hc-eEEeCCCCCHHHHHHHHHHHHHhc---------------CCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 999998 75 668999999887776665543221 233566666777777777777777766544
No 171
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.04 E-value=2.8e-09 Score=109.53 Aligned_cols=119 Identities=19% Similarity=0.302 Sum_probs=88.3
Q ss_pred eEEEECCCCCChhHHHHHHHHHcC------------------------CcEEEEecCccCC----hHHHHHHHHhc----
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLC------------------------YDVYDLELTKVTD----NSELRALLLQT---- 277 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~------------------------~~i~~l~l~~~~~----~~~L~~l~~~~---- 277 (530)
.+|||||||||||++|.++|+.+. .+++.++.+.... ...++++....
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~~ 105 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFLSESP 105 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCcchHHHHHHHHHHhccCC
Confidence 699999999999999999999986 5888888887755 33455554433
Q ss_pred --CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCC
Q 009640 278 --TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGL 355 (530)
Q Consensus 278 --~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl 355 (530)
...-||+|||+|.+- ....+.|+..+.--
T Consensus 106 ~~~~~kviiidead~mt-------------------------------------------------~~A~nallk~lEep 136 (325)
T COG0470 106 LEGGYKVVIIDEADKLT-------------------------------------------------EDAANALLKTLEEP 136 (325)
T ss_pred CCCCceEEEeCcHHHHh-------------------------------------------------HHHHHHHHHHhccC
Confidence 245799999999872 12345677777633
Q ss_pred ccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHH
Q 009640 356 WSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAK 404 (530)
Q Consensus 356 ~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~ 404 (530)
.....+|++||.++.+-|.+.+ |+ ..|.|..|+...+.....
T Consensus 137 ----~~~~~~il~~n~~~~il~tI~S--Rc-~~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 137 ----PKNTRFILITNDPSKILPTIRS--RC-QRIRFKPPSRLEAIAWLE 178 (325)
T ss_pred ----CCCeEEEEEcCChhhccchhhh--cc-eeeecCCchHHHHHHHhh
Confidence 3567899999999999998887 65 447887766665555444
No 172
>PRK08939 primosomal protein DnaI; Reviewed
Probab=99.04 E-value=8.4e-10 Score=113.10 Aligned_cols=97 Identities=21% Similarity=0.330 Sum_probs=67.1
Q ss_pred CCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecCccC-
Q 009640 190 PSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELTKVT- 265 (530)
Q Consensus 190 ~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~~~~- 265 (530)
..+|+++...+.-+..+......|+..-. . | +..+|++||||||||||+|+.|||+++ |+.+..+....+.
T Consensus 123 ~atf~~~~~~~~~~~~~~~~~~~fi~~~~---~-~-~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~ 197 (306)
T PRK08939 123 QASLADIDLDDRDRLDALMAALDFLEAYP---P-G-EKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIR 197 (306)
T ss_pred cCcHHHhcCCChHHHHHHHHHHHHHHHhh---c-c-CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHH
Confidence 46788887655445555555556664311 1 1 245799999999999999999999998 6777766655431
Q ss_pred ------ChHHHHHHHHhcCCCeEEEEcCccch
Q 009640 266 ------DNSELRALLLQTTNRSIIVIEDIDCS 291 (530)
Q Consensus 266 ------~~~~L~~l~~~~~~~sII~IDeID~~ 291 (530)
.+..+.+.+.......+|+||||.+-
T Consensus 198 ~lk~~~~~~~~~~~l~~l~~~dlLiIDDiG~e 229 (306)
T PRK08939 198 ELKNSISDGSVKEKIDAVKEAPVLMLDDIGAE 229 (306)
T ss_pred HHHHHHhcCcHHHHHHHhcCCCEEEEecCCCc
Confidence 11234556666788899999999863
No 173
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.03 E-value=2.9e-09 Score=110.42 Aligned_cols=146 Identities=21% Similarity=0.319 Sum_probs=103.0
Q ss_pred CcccccC-ChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCC----------------
Q 009640 192 TFETLAL-EPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCY---------------- 254 (530)
Q Consensus 192 ~f~~l~~-~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~---------------- 254 (530)
.|++|.| ++.+.+.+...+. .. ..+..||||||+|+||+++|.++|+.+..
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~----~~--------~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~ 70 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIA----KN--------RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK 70 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHH----cC--------CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHH
Confidence 3677877 7777666655442 21 12468999999999999999999998632
Q ss_pred --------cEEEEecCcc-CChHHHHHHHHhc------CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhh
Q 009640 255 --------DVYDLELTKV-TDNSELRALLLQT------TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKE 319 (530)
Q Consensus 255 --------~i~~l~l~~~-~~~~~L~~l~~~~------~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~ 319 (530)
|++.+....- ..-.+++.+.... ...-|++|||+|.+-
T Consensus 71 ~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~--------------------------- 123 (329)
T PRK08058 71 RIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT--------------------------- 123 (329)
T ss_pred HHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC---------------------------
Confidence 2333332211 1234566665433 245699999999871
Q ss_pred hccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHH
Q 009640 320 MGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAF 399 (530)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r 399 (530)
....+.||..|+.. ++..++|++|+.++.|-|++++ |. ..|+|..|+.++.
T Consensus 124 ----------------------~~a~NaLLK~LEEP----p~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~ 174 (329)
T PRK08058 124 ----------------------ASAANSLLKFLEEP----SGGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESL 174 (329)
T ss_pred ----------------------HHHHHHHHHHhcCC----CCCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHH
Confidence 22457899999854 4567888999999999999998 65 4589999999988
Q ss_pred HHHHHH
Q 009640 400 KVLAKN 405 (530)
Q Consensus 400 ~~i~~~ 405 (530)
...++.
T Consensus 175 ~~~L~~ 180 (329)
T PRK08058 175 IQRLQE 180 (329)
T ss_pred HHHHHH
Confidence 777764
No 174
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=4.6e-09 Score=117.48 Aligned_cols=161 Identities=17% Similarity=0.286 Sum_probs=116.6
Q ss_pred ccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcC---CcEEEEecCccCChHHH
Q 009640 194 ETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLC---YDVYDLELTKVTDNSEL 270 (530)
Q Consensus 194 ~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~---~~i~~l~l~~~~~~~~L 270 (530)
..|+|+++..+.|.+.+..-..+=. .-.. +...+||.||.|+|||-||+++|..|. -.++.++++++.....+
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~---dp~r-PigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsV 566 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLG---DPNR-PIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSV 566 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCC---CCCC-CceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHH
Confidence 4578888888888887765432100 0001 123588899999999999999999996 78899999988766666
Q ss_pred HHHHHhc------------------CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCC
Q 009640 271 RALLLQT------------------TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNN 332 (530)
Q Consensus 271 ~~l~~~~------------------~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 332 (530)
.+|+-.. ...|||+||||+..
T Consensus 567 SrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKA----------------------------------------- 605 (786)
T COG0542 567 SRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKA----------------------------------------- 605 (786)
T ss_pred HHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhc-----------------------------------------
Confidence 6664321 24599999999976
Q ss_pred CCCCCCcchhhhHHHHhhhccCCccCCCC-------CeEEEEEeCCCC----------------------------CCCh
Q 009640 333 NNNNGEESGRVTLSGLLNFTDGLWSCCSE-------EKIIVFTTNHRD----------------------------SVDP 377 (530)
Q Consensus 333 ~~~~~~~~~~~~ls~LLn~lDgl~s~~~~-------~~ivI~TTN~~~----------------------------~LDp 377 (530)
...+++-||+.+|.-.-..+. +.|||||||--. ...|
T Consensus 606 --------HpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~P 677 (786)
T COG0542 606 --------HPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRP 677 (786)
T ss_pred --------CHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCH
Confidence 234778888888743222122 358999999531 1345
Q ss_pred hhhcCCceeEEEEeCCCCHHHHHHHHHHhhCC
Q 009640 378 ALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGI 409 (530)
Q Consensus 378 ALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~ 409 (530)
+|+. |+|..|.|.+.+.+....|+..++..
T Consensus 678 EFLN--Rid~II~F~~L~~~~l~~Iv~~~L~~ 707 (786)
T COG0542 678 EFLN--RIDEIIPFNPLSKEVLERIVDLQLNR 707 (786)
T ss_pred HHHh--hcccEEeccCCCHHHHHHHHHHHHHH
Confidence 6676 99999999999999999999988753
No 175
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.02 E-value=3.2e-10 Score=100.23 Aligned_cols=105 Identities=24% Similarity=0.282 Sum_probs=61.6
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccCChHHHHHH--HHhc-------C---CCeEEEEcCccchhhhhhh
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVTDNSELRAL--LLQT-------T---NRSIIVIEDIDCSVDLTAD 297 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~~~~~L~~l--~~~~-------~---~~sII~IDeID~~~~~~~~ 297 (530)
++||.|+||+|||++++++|..++.++..+..+.-...+++... +... . -..|+++|||...
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNra------ 74 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRA------ 74 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS------
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccC------
Confidence 47999999999999999999999999999987643333333221 1110 1 1369999999876
Q ss_pred hhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhcc-------CCccCCCCCeEEEEEeC
Q 009640 298 RMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTD-------GLWSCCSEEKIIVFTTN 370 (530)
Q Consensus 298 r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lD-------gl~s~~~~~~ivI~TTN 370 (530)
...+.+.||..|. |..-...+..+||+|-|
T Consensus 75 -------------------------------------------ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqN 111 (131)
T PF07726_consen 75 -------------------------------------------PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQN 111 (131)
T ss_dssp --------------------------------------------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-
T ss_pred -------------------------------------------CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecC
Confidence 2346677887763 33333356678899999
Q ss_pred CCC-----CCChhhhcCCce
Q 009640 371 HRD-----SVDPALIRCGRM 385 (530)
Q Consensus 371 ~~~-----~LDpALlRpGR~ 385 (530)
..+ .|++|++. ||
T Consensus 112 p~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 112 PVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp TT--S------HHHHT--TS
T ss_pred ccccCceecCCHHHhc--cc
Confidence 877 68999998 77
No 176
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.02 E-value=1.7e-09 Score=115.60 Aligned_cols=128 Identities=20% Similarity=0.241 Sum_probs=80.4
Q ss_pred CceEEEECCCCCChhHHHHHHHHHcCC--c--EEEEecCc---cCChHHHHHH-----HHh-----cCCCeEEEEcCccc
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYLCY--D--VYDLELTK---VTDNSELRAL-----LLQ-----TTNRSIIVIEDIDC 290 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l~~--~--i~~l~l~~---~~~~~~L~~l-----~~~-----~~~~sII~IDeID~ 290 (530)
...+||+||||||||++|+++|..++. . +..+..+. +.+...+... |.. .....|||+|||..
T Consensus 39 g~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~r 118 (498)
T PRK13531 39 GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWK 118 (498)
T ss_pred CCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCccccccEEeeccccc
Confidence 357999999999999999999998753 2 22332211 1111111111 111 11334999999986
Q ss_pred hhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhcc-CCccC-----CCCCeE
Q 009640 291 SVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTD-GLWSC-----CSEEKI 364 (530)
Q Consensus 291 ~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lD-gl~s~-----~~~~~i 364 (530)
+ +..+.+.||..|. +.... .-..++
T Consensus 119 a-------------------------------------------------sp~~QsaLLeam~Er~~t~g~~~~~lp~rf 149 (498)
T PRK13531 119 A-------------------------------------------------GPAILNTLLTAINERRFRNGAHEEKIPMRL 149 (498)
T ss_pred C-------------------------------------------------CHHHHHHHHHHHHhCeEecCCeEEeCCCcE
Confidence 5 2346778888883 22111 113367
Q ss_pred EEEEeCCCC---CCChhhhcCCceeEEEEeCCCC-HHHHHHHHHHh
Q 009640 365 IVFTTNHRD---SVDPALIRCGRMDVHVSLGTCG-PHAFKVLAKNY 406 (530)
Q Consensus 365 vI~TTN~~~---~LDpALlRpGR~d~~I~~~~p~-~~~r~~i~~~~ 406 (530)
+++|||... ...+|+.. ||-.+|.++||+ .++.+.|+...
T Consensus 150 iv~ATN~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 150 LVTASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred EEEECCCCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcc
Confidence 777888422 23359999 999999999997 57778887653
No 177
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.00 E-value=2.7e-09 Score=119.83 Aligned_cols=153 Identities=19% Similarity=0.278 Sum_probs=101.1
Q ss_pred CcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc-------------------
Q 009640 192 TFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL------------------- 252 (530)
Q Consensus 192 ~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l------------------- 252 (530)
.|..|+|++.++..+.-... .+. ..|+||+||||||||+++++|++.+
T Consensus 2 pf~~ivGq~~~~~al~~~av----~~~---------~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAV----DPR---------IGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred CcchhcChHHHHHHHHHHhh----CCC---------CCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 57899999988876644332 211 2479999999999999999999988
Q ss_pred ----------------CCcEEEEecCcc----CChHHHHHHHHh-----------cCCCeEEEEcCccchhhhhhhhhhc
Q 009640 253 ----------------CYDVYDLELTKV----TDNSELRALLLQ-----------TTNRSIIVIEDIDCSVDLTADRMLK 301 (530)
Q Consensus 253 ----------------~~~i~~l~l~~~----~~~~~L~~l~~~-----------~~~~sII~IDeID~~~~~~~~r~~~ 301 (530)
..+++.+.++.. .+.-++...+.. .....|||||||+.+-
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~--------- 139 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLD--------- 139 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCC---------
Confidence 234555443321 112223333321 1244699999999871
Q ss_pred ccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhcc-C--------CccCCCCCeEEEEEeCCC
Q 009640 302 SSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTD-G--------LWSCCSEEKIIVFTTNHR 372 (530)
Q Consensus 302 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lD-g--------l~s~~~~~~ivI~TTN~~ 372 (530)
..+.+.||+.|+ | .........++|+|+|..
T Consensus 140 ----------------------------------------~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~ 179 (633)
T TIGR02442 140 ----------------------------------------DHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPE 179 (633)
T ss_pred ----------------------------------------HHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCC
Confidence 234556676664 2 111112346788888864
Q ss_pred -CCCChhhhcCCceeEEEEeCCCC-HHHHHHHHHHhhC
Q 009640 373 -DSVDPALIRCGRMDVHVSLGTCG-PHAFKVLAKNYLG 408 (530)
Q Consensus 373 -~~LDpALlRpGR~d~~I~~~~p~-~~~r~~i~~~~l~ 408 (530)
..|.++|+. ||+.+|.++++. .+++.+++...+.
T Consensus 180 eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~~~~ 215 (633)
T TIGR02442 180 EGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRRRLA 215 (633)
T ss_pred CCCCCHHHHh--hcceEEEccCCCchHHHHHHHHHHHh
Confidence 368999999 999999999885 5777888876543
No 178
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.00 E-value=4.4e-10 Score=105.67 Aligned_cols=64 Identities=25% Similarity=0.524 Sum_probs=51.7
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCC----cEEEEecCccCC----hHHHHHHHHhcC------CCeEEEEcCccchh
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCY----DVYDLELTKVTD----NSELRALLLQTT------NRSIIVIEDIDCSV 292 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~----~i~~l~l~~~~~----~~~L~~l~~~~~------~~sII~IDeID~~~ 292 (530)
..+||.||+|||||.|++++|..+.. ++..++++.+.. ...+.+++.... ...||+|||||.+.
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~ 81 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAH 81 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccchhhhhhHHHhhcc
Confidence 56899999999999999999999996 999999999887 444555554432 33599999999973
No 179
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=5.4e-09 Score=110.26 Aligned_cols=134 Identities=20% Similarity=0.310 Sum_probs=95.4
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCCcEEEEe-cCcc------CChHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhh
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCYDVYDLE-LTKV------TDNSELRALLLQT--TNRSIIVIEDIDCSVDLTADRM 299 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~-l~~~------~~~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~ 299 (530)
..+||+||||+|||+||+.||...+++|+.+- ..+. ..-..+++.|..+ +.-|||++|||+.+++-..
T Consensus 539 vSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~vp--- 615 (744)
T KOG0741|consen 539 VSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYVP--- 615 (744)
T ss_pred eEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhcccc---
Confidence 57999999999999999999999999998763 2222 2234588889988 4569999999999974211
Q ss_pred hcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEE-EEeCCCCCCC-h
Q 009640 300 LKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIV-FTTNHRDSVD-P 377 (530)
Q Consensus 300 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI-~TTN~~~~LD-p 377 (530)
-+..-+..++..|+..+..... .+++++| +||...+-|. -
T Consensus 616 ------------------------------------IGPRfSN~vlQaL~VllK~~pp--kg~kLli~~TTS~~~vL~~m 657 (744)
T KOG0741|consen 616 ------------------------------------IGPRFSNLVLQALLVLLKKQPP--KGRKLLIFGTTSRREVLQEM 657 (744)
T ss_pred ------------------------------------cCchhhHHHHHHHHHHhccCCC--CCceEEEEecccHHHHHHHc
Confidence 2234467788999999987765 3445554 5666555443 2
Q ss_pred hhhcCCceeEEEEeCCCCH-HHHHHHHHH
Q 009640 378 ALIRCGRMDVHVSLGTCGP-HAFKVLAKN 405 (530)
Q Consensus 378 ALlRpGR~d~~I~~~~p~~-~~r~~i~~~ 405 (530)
.++. .|+-.|++|..+. ++...++..
T Consensus 658 ~i~~--~F~~~i~Vpnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 658 GILD--CFSSTIHVPNLTTGEQLLEVLEE 684 (744)
T ss_pred CHHH--hhhheeecCccCchHHHHHHHHH
Confidence 4445 7888999987766 555555443
No 180
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.95 E-value=1e-08 Score=106.29 Aligned_cols=57 Identities=12% Similarity=0.202 Sum_probs=48.5
Q ss_pred hhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHh
Q 009640 343 VTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNY 406 (530)
Q Consensus 343 ~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~ 406 (530)
..-+.||+.|+.- ..+.++|++|++++.|.|.+++ |+ ..|.|+.|+.++....+...
T Consensus 147 ~AaNaLLKtLEEP----p~~t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 147 AAANALLKTLEEP----PPGTVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred HHHHHHHHHhcCC----CcCcEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 3568899999853 5678999999999999999998 87 68999999999988887654
No 181
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.93 E-value=1e-08 Score=102.53 Aligned_cols=94 Identities=26% Similarity=0.453 Sum_probs=61.1
Q ss_pred CCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecCccCC
Q 009640 190 PSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELTKVTD 266 (530)
Q Consensus 190 ~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~~~~~ 266 (530)
...+.++-+.+...+.....+..+.. +|. -..+++||||||||||+|+.|||+++ |..++.+...++..
T Consensus 75 ~~~~~d~~~~~~~~~~~l~~~~~~~~---~~~-----~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~ 146 (254)
T COG1484 75 TFEEFDFEFQPGIDKKALEDLASLVE---FFE-----RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLS 146 (254)
T ss_pred CcccccccCCcchhHHHHHHHHHHHH---Hhc-----cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHH
Confidence 33445555666555555555544442 121 25799999999999999999999998 56667766655421
Q ss_pred -------hHHHH-HHHHhcCCCeEEEEcCccch
Q 009640 267 -------NSELR-ALLLQTTNRSIIVIEDIDCS 291 (530)
Q Consensus 267 -------~~~L~-~l~~~~~~~sII~IDeID~~ 291 (530)
+.... ++.....+..+||||||-..
T Consensus 147 ~Lk~~~~~~~~~~~l~~~l~~~dlLIiDDlG~~ 179 (254)
T COG1484 147 KLKAAFDEGRLEEKLLRELKKVDLLIIDDIGYE 179 (254)
T ss_pred HHHHHHhcCchHHHHHHHhhcCCEEEEecccCc
Confidence 11122 23333677889999999864
No 182
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.92 E-value=1.4e-08 Score=106.75 Aligned_cols=168 Identities=16% Similarity=0.214 Sum_probs=100.6
Q ss_pred cCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcC-----CcEEEE
Q 009640 185 VPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLC-----YDVYDL 259 (530)
Q Consensus 185 ~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~-----~~i~~l 259 (530)
....+..+|++++..+.-... ......+...+. . ....++||||.|.|||+|++|++++.. ..++.+
T Consensus 78 ~~l~~~ytFdnFv~g~~N~~A-~aa~~~va~~~g------~-~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~ 149 (408)
T COG0593 78 SGLNPKYTFDNFVVGPSNRLA-YAAAKAVAENPG------G-AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYL 149 (408)
T ss_pred ccCCCCCchhheeeCCchHHH-HHHHHHHHhccC------C-cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEec
Confidence 445677899998766554332 222333333332 1 235789999999999999999999983 234444
Q ss_pred ecCccCCh--HHH----HHHHHhcCCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCC
Q 009640 260 ELTKVTDN--SEL----RALLLQTTNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNN 333 (530)
Q Consensus 260 ~l~~~~~~--~~L----~~l~~~~~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 333 (530)
....+... ..+ ..-|.+..+-.+++||||+.+.
T Consensus 150 ~se~f~~~~v~a~~~~~~~~Fk~~y~~dlllIDDiq~l~----------------------------------------- 188 (408)
T COG0593 150 TSEDFTNDFVKALRDNEMEKFKEKYSLDLLLIDDIQFLA----------------------------------------- 188 (408)
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHhhccCeeeechHhHhc-----------------------------------------
Confidence 33322100 000 0112222355699999999983
Q ss_pred CCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCC---ChhhhcCCcee--EEEEeCCCCHHHHHHHHHHhhC
Q 009640 334 NNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSV---DPALIRCGRMD--VHVSLGTCGPHAFKVLAKNYLG 408 (530)
Q Consensus 334 ~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~L---DpALlRpGR~d--~~I~~~~p~~~~r~~i~~~~l~ 408 (530)
+....+..+-.+.|.+ .. .++.||+.+...|..| +|.|.+ ||. ..+.+..|+.+.|..|++....
T Consensus 189 ---gk~~~qeefFh~FN~l---~~--~~kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~ 258 (408)
T COG0593 189 ---GKERTQEEFFHTFNAL---LE--NGKQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAE 258 (408)
T ss_pred ---CChhHHHHHHHHHHHH---Hh--cCCEEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHH
Confidence 1111233333344433 32 2335555554556654 589998 764 7888999999999999988654
Q ss_pred CcC
Q 009640 409 IES 411 (530)
Q Consensus 409 ~~~ 411 (530)
...
T Consensus 259 ~~~ 261 (408)
T COG0593 259 DRG 261 (408)
T ss_pred hcC
Confidence 433
No 183
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.91 E-value=3e-08 Score=92.44 Aligned_cols=110 Identities=22% Similarity=0.311 Sum_probs=79.9
Q ss_pred CceEEEECCCCCChhHHHHHHHHHcC-----------------------CcEEEEecCcc---CChHHHHHHHHhc----
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYLC-----------------------YDVYDLELTKV---TDNSELRALLLQT---- 277 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l~-----------------------~~i~~l~l~~~---~~~~~L~~l~~~~---- 277 (530)
+..||||||+|+||+++|.++|+.+- .|++.++.... ..-.+++.+....
T Consensus 19 ~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~i~~ir~i~~~~~~~~ 98 (162)
T PF13177_consen 19 PHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIKIDQIREIIEFLSLSP 98 (162)
T ss_dssp -SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSBSHHHHHHHHHHCTSS-
T ss_pred ceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchhhHHHHHHHHHHHHHHH
Confidence 45799999999999999999999771 35566655443 3456777776654
Q ss_pred --CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCC
Q 009640 278 --TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGL 355 (530)
Q Consensus 278 --~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl 355 (530)
...-|++|||+|.+ .....+.||..|+..
T Consensus 99 ~~~~~KviiI~~ad~l-------------------------------------------------~~~a~NaLLK~LEep 129 (162)
T PF13177_consen 99 SEGKYKVIIIDEADKL-------------------------------------------------TEEAQNALLKTLEEP 129 (162)
T ss_dssp TTSSSEEEEEETGGGS--------------------------------------------------HHHHHHHHHHHHST
T ss_pred hcCCceEEEeehHhhh-------------------------------------------------hHHHHHHHHHHhcCC
Confidence 24569999999987 233568899999854
Q ss_pred ccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCC
Q 009640 356 WSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGT 393 (530)
Q Consensus 356 ~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~ 393 (530)
....++|++|+.++.|-|.+++ |. ..|.|+.
T Consensus 130 ----p~~~~fiL~t~~~~~il~TI~S--Rc-~~i~~~~ 160 (162)
T PF13177_consen 130 ----PENTYFILITNNPSKILPTIRS--RC-QVIRFRP 160 (162)
T ss_dssp ----TTTEEEEEEES-GGGS-HHHHT--TS-EEEEE--
T ss_pred ----CCCEEEEEEECChHHChHHHHh--hc-eEEecCC
Confidence 4678999999999999999998 75 3455554
No 184
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.91 E-value=4.1e-08 Score=107.17 Aligned_cols=71 Identities=28% Similarity=0.471 Sum_probs=57.8
Q ss_pred CCCccccCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEE
Q 009640 179 DSGWVSVPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYD 258 (530)
Q Consensus 179 ~~~w~~~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~ 258 (530)
...| +..+.|.+.++|+......++|...+...+.. ....+-+||+||||||||++++++|+++++++..
T Consensus 6 ~~~W--~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~--------~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~E 75 (519)
T PF03215_consen 6 SEPW--VEKYAPKTLDELAVHKKKVEEVRSWLEEMFSG--------SSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQE 75 (519)
T ss_pred cCcc--chhcCCCCHHHhhccHHHHHHHHHHHHHHhcc--------CCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEE
Confidence 3478 88899999999999988888888877764432 2334567889999999999999999999988865
Q ss_pred E
Q 009640 259 L 259 (530)
Q Consensus 259 l 259 (530)
-
T Consensus 76 w 76 (519)
T PF03215_consen 76 W 76 (519)
T ss_pred e
Confidence 3
No 185
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.88 E-value=1.3e-08 Score=102.07 Aligned_cols=194 Identities=16% Similarity=0.215 Sum_probs=119.0
Q ss_pred CCCCccccCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCc--
Q 009640 178 YDSGWVSVPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYD-- 255 (530)
Q Consensus 178 ~~~~w~~~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~-- 255 (530)
+..+| ++.++|..++++++++++...+.+ |...+. -...|+|||||||||+.+.|.|..+-.+
T Consensus 27 ~~~pw--vekyrP~~l~dv~~~~ei~st~~~----~~~~~~---------lPh~L~YgPPGtGktsti~a~a~~ly~~~~ 91 (360)
T KOG0990|consen 27 YPQPW--VEKYRPPFLGIVIKQEPIWSTENR----YSGMPG---------LPHLLFYGPPGTGKTSTILANARDFYSPHP 91 (360)
T ss_pred cCCCC--ccCCCCchhhhHhcCCchhhHHHH----hccCCC---------CCcccccCCCCCCCCCchhhhhhhhcCCCC
Confidence 44568 889999999999998886554444 333221 2389999999999999999999988442
Q ss_pred ----EEEEecCccCCh---HHHHHHHHhcC---------CCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhh
Q 009640 256 ----VYDLELTKVTDN---SELRALLLQTT---------NRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKE 319 (530)
Q Consensus 256 ----i~~l~l~~~~~~---~~L~~l~~~~~---------~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~ 319 (530)
+..++++.-.+- ..-.+.|..+. ..-.|++||.|++-
T Consensus 92 ~~~m~lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT--------------------------- 144 (360)
T KOG0990|consen 92 TTSMLLELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMT--------------------------- 144 (360)
T ss_pred chhHHHHhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhh---------------------------
Confidence 222333332221 12223344433 56789999999872
Q ss_pred hccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHH
Q 009640 320 MGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAF 399 (530)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r 399 (530)
+...++|-..+.-+. .+.-++.-+|++.++.|++.. |+.. ..|..-+...-
T Consensus 145 ----------------------~~AQnALRRviek~t----~n~rF~ii~n~~~ki~pa~qs--Rctr-frf~pl~~~~~ 195 (360)
T KOG0990|consen 145 ----------------------RDAQNALRRVIEKYT----ANTRFATISNPPQKIHPAQQS--RCTR-FRFAPLTMAQQ 195 (360)
T ss_pred ----------------------HHHHHHHHHHHHHhc----cceEEEEeccChhhcCchhhc--cccc-CCCCCCChhhh
Confidence 111233334444332 344455789999999999996 5533 34555555555
Q ss_pred HHHHHHhhCCcCccchHHHHHHHHHhCCCCCHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 009640 400 KVLAKNYLGIESHHALFDVVESCIRAGGALTPAQIGEVLLRNRGNVDLAMKEVVSAMQ 457 (530)
Q Consensus 400 ~~i~~~~l~~~~~~~~~~~i~~l~~~~~~~spadi~~~l~~~~~d~~~al~~l~~~l~ 457 (530)
.....+....+. ..++|.-...+..-..+|..+|++.+...+.
T Consensus 196 ~~r~shi~e~e~---------------~~~~~~~~~a~~r~s~gDmr~a~n~Lqs~~~ 238 (360)
T KOG0990|consen 196 TERQSHIRESEQ---------------KETNPEGYSALGRLSVGDMRVALNYLQSILK 238 (360)
T ss_pred hhHHHHHHhcch---------------hhcCHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 555555544332 2344444444555556677777777665544
No 186
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.87 E-value=8.5e-09 Score=113.05 Aligned_cols=159 Identities=18% Similarity=0.200 Sum_probs=95.1
Q ss_pred cccCChhhhHHHHHHHHHHHcChhhHhhhcCCC--CceEEEECCCCCChhHHHHHHHHHcCCcEEEEe----cCccCChH
Q 009640 195 TLALEPQLKKQITEDLTAFANGKEFYHRVGRAW--KRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLE----LTKVTDNS 268 (530)
Q Consensus 195 ~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~--~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~----l~~~~~~~ 268 (530)
.+.|.+.+|..|.-.+. ..-.....-|... ...+||+|+||||||++++++++.+....|... ...+.. .
T Consensus 204 ~i~G~~~~k~~l~l~l~---gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~-~ 279 (509)
T smart00350 204 SIYGHEDIKKAILLLLF---GGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTA-A 279 (509)
T ss_pred cccCcHHHHHHHHHHHh---CCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccc-c
Confidence 46777777776654332 2111000111111 225999999999999999999998865544321 111100 0
Q ss_pred HHHHH----------HHhcCCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCC
Q 009640 269 ELRAL----------LLQTTNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGE 338 (530)
Q Consensus 269 ~L~~l----------~~~~~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (530)
.++.- ........+++|||+|.+-
T Consensus 280 ~~~~~~~g~~~~~~G~l~~A~~Gil~iDEi~~l~---------------------------------------------- 313 (509)
T smart00350 280 VTRDPETREFTLEGGALVLADNGVCCIDEFDKMD---------------------------------------------- 313 (509)
T ss_pred ceEccCcceEEecCccEEecCCCEEEEechhhCC----------------------------------------------
Confidence 01110 0112356799999999872
Q ss_pred cchhhhHHHHhhhcc---------CCccCCCCCeEEEEEeCCCC-------------CCChhhhcCCceeEEEE-eCCCC
Q 009640 339 ESGRVTLSGLLNFTD---------GLWSCCSEEKIIVFTTNHRD-------------SVDPALIRCGRMDVHVS-LGTCG 395 (530)
Q Consensus 339 ~~~~~~ls~LLn~lD---------gl~s~~~~~~ivI~TTN~~~-------------~LDpALlRpGR~d~~I~-~~~p~ 395 (530)
..+.+.|+..|+ |....-.....||+|+|..+ .|+|+|++ |||..+. +.+|+
T Consensus 314 ---~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~ 388 (509)
T smart00350 314 ---DSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVD 388 (509)
T ss_pred ---HHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCC
Confidence 112334444442 22211124567889999763 59999999 9997654 58999
Q ss_pred HHHHHHHHHHhhC
Q 009640 396 PHAFKVLAKNYLG 408 (530)
Q Consensus 396 ~~~r~~i~~~~l~ 408 (530)
.+....|+++.+.
T Consensus 389 ~~~d~~i~~~i~~ 401 (509)
T smart00350 389 EERDRELAKHVVD 401 (509)
T ss_pred hHHHHHHHHHHHH
Confidence 9999999988654
No 187
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.86 E-value=6.6e-08 Score=100.34 Aligned_cols=123 Identities=16% Similarity=0.170 Sum_probs=92.8
Q ss_pred CceEEEECCCCCChhHHHHHHHHHcC------------------------CcEEEEecCc---cCChHHHHHHHHhc---
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYLC------------------------YDVYDLELTK---VTDNSELRALLLQT--- 277 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l~------------------------~~i~~l~l~~---~~~~~~L~~l~~~~--- 277 (530)
+.+|||+||+|+||+++|.++|..+- -|++.+.... ..+-+.+|.+....
T Consensus 24 ~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~ 103 (334)
T PRK07993 24 HHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLYEH 103 (334)
T ss_pred ceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHhhc
Confidence 45899999999999999999999872 2344453321 13445666665543
Q ss_pred ---CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccC
Q 009640 278 ---TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDG 354 (530)
Q Consensus 278 ---~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg 354 (530)
...-|++||++|.+ ....-+.||+.|+.
T Consensus 104 ~~~g~~kV~iI~~ae~m-------------------------------------------------~~~AaNaLLKtLEE 134 (334)
T PRK07993 104 ARLGGAKVVWLPDAALL-------------------------------------------------TDAAANALLKTLEE 134 (334)
T ss_pred cccCCceEEEEcchHhh-------------------------------------------------CHHHHHHHHHHhcC
Confidence 24569999999987 12346789999985
Q ss_pred CccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHh
Q 009640 355 LWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNY 406 (530)
Q Consensus 355 l~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~ 406 (530)
- +++.++|++|++++.|-|.+++ |.- .+.|+.|+.++....+...
T Consensus 135 P----p~~t~fiL~t~~~~~lLpTIrS--RCq-~~~~~~~~~~~~~~~L~~~ 179 (334)
T PRK07993 135 P----PENTWFFLACREPARLLATLRS--RCR-LHYLAPPPEQYALTWLSRE 179 (334)
T ss_pred C----CCCeEEEEEECChhhChHHHHh--ccc-cccCCCCCHHHHHHHHHHc
Confidence 3 5678999999999999999998 775 5899999998888776543
No 188
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.84 E-value=1.4e-07 Score=97.10 Aligned_cols=122 Identities=15% Similarity=0.218 Sum_probs=86.4
Q ss_pred CceEEEECCCCCChhHHHHHHHHHcCC---------------------cEEEEe--cCcc-------CChHHHHHHHHhc
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYLCY---------------------DVYDLE--LTKV-------TDNSELRALLLQT 277 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l~~---------------------~i~~l~--l~~~-------~~~~~L~~l~~~~ 277 (530)
+.+|||+||+|+||+++|.++|+.+-. |++.+. ...- ..-+.++.+....
T Consensus 26 ~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~~ 105 (319)
T PRK08769 26 GHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQKL 105 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHHH
Confidence 458999999999999999999987622 233332 1110 1233455554432
Q ss_pred ------CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhh
Q 009640 278 ------TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNF 351 (530)
Q Consensus 278 ------~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~ 351 (530)
...-|++||++|.+ +....+.||+.
T Consensus 106 ~~~p~~g~~kV~iI~~ae~m-------------------------------------------------~~~AaNaLLKt 136 (319)
T PRK08769 106 ALTPQYGIAQVVIVDPADAI-------------------------------------------------NRAACNALLKT 136 (319)
T ss_pred hhCcccCCcEEEEeccHhhh-------------------------------------------------CHHHHHHHHHH
Confidence 13358888888876 22356789999
Q ss_pred ccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHH
Q 009640 352 TDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKN 405 (530)
Q Consensus 352 lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~ 405 (530)
|+.- ..+.++|++|+.++.|-|.+++ |+ ..|.|+.|+.++-...+..
T Consensus 137 LEEP----p~~~~fiL~~~~~~~lLpTIrS--RC-q~i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 137 LEEP----SPGRYLWLISAQPARLPATIRS--RC-QRLEFKLPPAHEALAWLLA 183 (319)
T ss_pred hhCC----CCCCeEEEEECChhhCchHHHh--hh-eEeeCCCcCHHHHHHHHHH
Confidence 9854 4567899999999999999998 76 4588999999877776654
No 189
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.82 E-value=2.8e-08 Score=102.72 Aligned_cols=63 Identities=24% Similarity=0.391 Sum_probs=46.3
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecCccCC---------hHHHHHHHHhcCCCeEEEEcCccch
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELTKVTD---------NSELRALLLQTTNRSIIVIEDIDCS 291 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~~~~~---------~~~L~~l~~~~~~~sII~IDeID~~ 291 (530)
.+++||||||||||+|+.|||+++ ++.++.++...+.. ..+....+.......+|+|||+...
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~~DLLIIDDlG~e 258 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLINCDLLIIDDLGTE 258 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhccCCEEEEeccCCC
Confidence 689999999999999999999998 67777776554311 1112222444567789999999864
No 190
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.81 E-value=7.4e-08 Score=107.22 Aligned_cols=128 Identities=18% Similarity=0.225 Sum_probs=88.2
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCC--cEEEEecCcc----CChHHHHHHHH-----------hcCCCeEEEEcCccch
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCY--DVYDLELTKV----TDNSELRALLL-----------QTTNRSIIVIEDIDCS 291 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~--~i~~l~l~~~----~~~~~L~~l~~-----------~~~~~sII~IDeID~~ 291 (530)
.|+||.|+||||||+++++++..+.. +|..+..... .+.-++...+. ......+||||||+.+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl 96 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLL 96 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhC
Confidence 58999999999999999999998865 3666654211 11111221111 0134479999999987
Q ss_pred hhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhcc---------CCccCCCCC
Q 009640 292 VDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTD---------GLWSCCSEE 362 (530)
Q Consensus 292 ~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lD---------gl~s~~~~~ 362 (530)
- ..+.+.|++.|+ |........
T Consensus 97 ~-------------------------------------------------~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~ 127 (589)
T TIGR02031 97 D-------------------------------------------------DGLSNRLLQALDEGVVIVEREGISVVHPAK 127 (589)
T ss_pred C-------------------------------------------------HHHHHHHHHHHHcCCeEEEECCCceeecCc
Confidence 1 234566777664 222212234
Q ss_pred eEEEEEeCCCC---CCChhhhcCCceeEEEEeCCC-CHHHHHHHHHHhh
Q 009640 363 KIIVFTTNHRD---SVDPALIRCGRMDVHVSLGTC-GPHAFKVLAKNYL 407 (530)
Q Consensus 363 ~ivI~TTN~~~---~LDpALlRpGR~d~~I~~~~p-~~~~r~~i~~~~l 407 (530)
..||+|+|..+ .|.++|+. ||+.+|.+.++ +..+|.+|++.++
T Consensus 128 f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~~~~~~er~eil~~~~ 174 (589)
T TIGR02031 128 FALIATYDPAEGGGGLPDHLLD--RLALHVSLEDVASQDLRVEIVRRER 174 (589)
T ss_pred eEEEEecCCccccCCCCHHHHH--hccCeeecCCCCCHHHHHHHHHHHH
Confidence 67888999876 79999999 99999998765 6677899998876
No 191
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.76 E-value=2.9e-07 Score=101.75 Aligned_cols=91 Identities=13% Similarity=0.199 Sum_probs=69.8
Q ss_pred CCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecCccC
Q 009640 189 HPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELTKVT 265 (530)
Q Consensus 189 ~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~~~~ 265 (530)
...+|+.++|....-+.+++.+....... ..+||+|++||||+++|++|.... +.+++.+++..+.
T Consensus 191 ~~~~~~~liG~s~~~~~~~~~~~~~a~~~-----------~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 191 RSGKEDGIIGKSPAMRQVVDQARVVARSN-----------STVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS 259 (534)
T ss_pred ccCccCceEECCHHHHHHHHHHHHHhCcC-----------CCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC
Confidence 34578999999988888888887776543 479999999999999999999885 5689999998874
Q ss_pred ChHHHHHHH-H-----------------hcCCCeEEEEcCccch
Q 009640 266 DNSELRALL-L-----------------QTTNRSIIVIEDIDCS 291 (530)
Q Consensus 266 ~~~~L~~l~-~-----------------~~~~~sII~IDeID~~ 291 (530)
. ..+...+ - .......|||||||.+
T Consensus 260 ~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L 302 (534)
T TIGR01817 260 E-TLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEI 302 (534)
T ss_pred H-HHHHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhC
Confidence 3 3333322 1 1234578999999987
No 192
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=5.2e-08 Score=109.15 Aligned_cols=154 Identities=21% Similarity=0.298 Sum_probs=105.4
Q ss_pred CcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc----------CCcEEEEec
Q 009640 192 TFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL----------CYDVYDLEL 261 (530)
Q Consensus 192 ~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l----------~~~i~~l~l 261 (530)
.++-++|-++..+.+++.|.+.. +..-+|.|+||+|||.++..+|... +..+|.+++
T Consensus 168 klDPvIGRd~EI~r~iqIL~RR~-------------KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~ 234 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSRRT-------------KNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDL 234 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhccC-------------CCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecH
Confidence 46778887776666666554332 3456899999999999999999876 778899988
Q ss_pred CccC--------ChHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCC
Q 009640 262 TKVT--------DNSELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGN 331 (530)
Q Consensus 262 ~~~~--------~~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 331 (530)
..+. -+..|+.++... ..+.|||||||+.+.+..+.
T Consensus 235 g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~---------------------------------- 280 (786)
T COG0542 235 GSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGAT---------------------------------- 280 (786)
T ss_pred HHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcc----------------------------------
Confidence 7763 245677887765 34899999999998641110
Q ss_pred CCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCC-----CCChhhhcCCceeEEEEeCCCCHHHHHHHHHHh
Q 009640 332 NNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRD-----SVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNY 406 (530)
Q Consensus 332 ~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~-----~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~ 406 (530)
.+ . ..-.+.+|.-. + ..++.-+|++|+..+ .=|+||-| ||.. |.+..|+.++-..|++-.
T Consensus 281 ----~G--~-a~DAaNiLKPa--L---ARGeL~~IGATT~~EYRk~iEKD~AL~R--RFQ~-V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 281 ----EG--G-AMDAANLLKPA--L---ARGELRCIGATTLDEYRKYIEKDAALER--RFQK-VLVDEPSVEDTIAILRGL 345 (786)
T ss_pred ----cc--c-ccchhhhhHHH--H---hcCCeEEEEeccHHHHHHHhhhchHHHh--cCce-eeCCCCCHHHHHHHHHHH
Confidence 00 0 11122233221 1 135566777665433 24999999 9955 899999999999998754
Q ss_pred h
Q 009640 407 L 407 (530)
Q Consensus 407 l 407 (530)
-
T Consensus 346 k 346 (786)
T COG0542 346 K 346 (786)
T ss_pred H
Confidence 3
No 193
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.76 E-value=1.1e-07 Score=98.01 Aligned_cols=123 Identities=15% Similarity=0.167 Sum_probs=91.3
Q ss_pred CceEEEECCCCCChhHHHHHHHHHcCC------------------------cEEEEecC--ccCChHHHHHHHHhc----
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYLCY------------------------DVYDLELT--KVTDNSELRALLLQT---- 277 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l~~------------------------~i~~l~l~--~~~~~~~L~~l~~~~---- 277 (530)
+.+|||+||+|+||+++|.++|..+-. |++.+... ...+-+++|.+....
T Consensus 24 ~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~~ 103 (325)
T PRK06871 24 HHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQHA 103 (325)
T ss_pred ceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhhcc
Confidence 458999999999999999999998732 23444321 112345666664443
Q ss_pred --CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCC
Q 009640 278 --TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGL 355 (530)
Q Consensus 278 --~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl 355 (530)
...-|++||++|.+ +....+.||..|+.-
T Consensus 104 ~~g~~KV~iI~~a~~m-------------------------------------------------~~~AaNaLLKtLEEP 134 (325)
T PRK06871 104 QQGGNKVVYIQGAERL-------------------------------------------------TEAAANALLKTLEEP 134 (325)
T ss_pred ccCCceEEEEechhhh-------------------------------------------------CHHHHHHHHHHhcCC
Confidence 23458889999987 233567899999853
Q ss_pred ccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHh
Q 009640 356 WSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNY 406 (530)
Q Consensus 356 ~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~ 406 (530)
.+..++|++|++++.|.|.+++ |. ..+.|+.|+.++....+...
T Consensus 135 ----p~~~~fiL~t~~~~~llpTI~S--RC-~~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 135 ----RPNTYFLLQADLSAALLPTIYS--RC-QTWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred ----CCCeEEEEEECChHhCchHHHh--hc-eEEeCCCCCHHHHHHHHHHH
Confidence 5678999999999999999998 76 55899999998888777654
No 194
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.75 E-value=1.7e-08 Score=96.78 Aligned_cols=46 Identities=28% Similarity=0.537 Sum_probs=35.9
Q ss_pred CcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc
Q 009640 192 TFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 192 ~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l 252 (530)
.|++|.|++.+|+.+.-... | ..++||+||||||||++|++++..|
T Consensus 1 Df~dI~GQe~aKrAL~iAAa------------G---~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA------------G---GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH------------C---C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred ChhhhcCcHHHHHHHHHHHc------------C---CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 37899999999988765442 1 3589999999999999999999877
No 195
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.74 E-value=3.4e-07 Score=94.98 Aligned_cols=83 Identities=16% Similarity=0.269 Sum_probs=58.1
Q ss_pred cCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecCccCChHHHHH-
Q 009640 197 ALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELTKVTDNSELRA- 272 (530)
Q Consensus 197 ~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~~~~~~~~L~~- 272 (530)
+|....-+.+.+.+...... ...+||+|+|||||+++|++|-... +.+++.+++..+.. ..+..
T Consensus 2 iG~S~~m~~~~~~~~~~a~~-----------~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~-~~l~~~ 69 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRLAPL-----------DRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSE-NLLDSE 69 (329)
T ss_pred CcCCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCCh-HHHHHH
Confidence 34444555566666655543 3579999999999999999998766 46899999987643 23332
Q ss_pred HH-----------------HhcCCCeEEEEcCccch
Q 009640 273 LL-----------------LQTTNRSIIVIEDIDCS 291 (530)
Q Consensus 273 l~-----------------~~~~~~sII~IDeID~~ 291 (530)
+| ........|||||||.+
T Consensus 70 lfG~~~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L 105 (329)
T TIGR02974 70 LFGHEAGAFTGAQKRHQGRFERADGGTLFLDELATA 105 (329)
T ss_pred HhccccccccCcccccCCchhhCCCCEEEeCChHhC
Confidence 22 11235689999999987
No 196
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.73 E-value=5.8e-09 Score=98.73 Aligned_cols=63 Identities=27% Similarity=0.556 Sum_probs=45.5
Q ss_pred CceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecCccC-------ChHHHHHHHHhcCCCeEEEEcCccc
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELTKVT-------DNSELRALLLQTTNRSIIVIEDIDC 290 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~~~~-------~~~~L~~l~~~~~~~sII~IDeID~ 290 (530)
..|++|+||||||||+||.|||+++ |+.++.++..++. .+....+++.......+|||||+..
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~~dlLilDDlG~ 119 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKRVDLLILDDLGY 119 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHTSSCEEEETCTS
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccccccEecccccce
Confidence 4699999999999999999999987 7777777765541 1223444555666778999999975
No 197
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.72 E-value=1.2e-06 Score=87.71 Aligned_cols=24 Identities=33% Similarity=0.449 Sum_probs=22.3
Q ss_pred eEEEECCCCCChhHHHHHHHHHcC
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLC 253 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~ 253 (530)
-++|+||||+|||++++.+++.+.
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcC
Confidence 478999999999999999999986
No 198
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.72 E-value=8.9e-08 Score=99.03 Aligned_cols=122 Identities=16% Similarity=0.220 Sum_probs=88.3
Q ss_pred CceEEEECCCCCChhHHHHHHHHHcC-------------------------CcEEEEecCc----------cCChHHHHH
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYLC-------------------------YDVYDLELTK----------VTDNSELRA 272 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l~-------------------------~~i~~l~l~~----------~~~~~~L~~ 272 (530)
+.+|||+||+|+|||++|.++|..+. -|++.++... ..+-+.+|.
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR~ 100 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVRE 100 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHHHH
Confidence 45899999999999999999999863 3456665422 123456676
Q ss_pred HHHhc------CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHH
Q 009640 273 LLLQT------TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLS 346 (530)
Q Consensus 273 l~~~~------~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 346 (530)
+...+ ...-|++||++|.+ +....+
T Consensus 101 l~~~~~~~p~~~~~kV~iiEp~~~L-------------------------------------------------d~~a~n 131 (325)
T PRK08699 101 IIDNVYLTSVRGGLRVILIHPAESM-------------------------------------------------NLQAAN 131 (325)
T ss_pred HHHHHhhCcccCCceEEEEechhhC-------------------------------------------------CHHHHH
Confidence 65543 24568899999987 122345
Q ss_pred HHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHH
Q 009640 347 GLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKN 405 (530)
Q Consensus 347 ~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~ 405 (530)
.||..|+... .+..+|++|++++.+.|.+.+ |+ ..+.|+.|+.++....+..
T Consensus 132 aLLk~LEep~----~~~~~Ilvth~~~~ll~ti~S--Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 132 SLLKVLEEPP----PQVVFLLVSHAADKVLPTIKS--RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred HHHHHHHhCc----CCCEEEEEeCChHhChHHHHH--Hh-hhhcCCCCCHHHHHHHHHh
Confidence 6777777542 346788899999999999887 65 5688999999887766653
No 199
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.71 E-value=2e-07 Score=95.84 Aligned_cols=122 Identities=16% Similarity=0.180 Sum_probs=92.0
Q ss_pred CceEEEECCCCCChhHHHHHHHHHcC-----------------------CcEEEEecCc---cCChHHHHHHHHhc----
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYLC-----------------------YDVYDLELTK---VTDNSELRALLLQT---- 277 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l~-----------------------~~i~~l~l~~---~~~~~~L~~l~~~~---- 277 (530)
+.+|||+||.|+||+++|.++|..+- -|++.+.... ..+-+.++.+....
T Consensus 25 ~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~~~ 104 (319)
T PRK06090 25 PGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQESS 104 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHhhCc
Confidence 45899999999999999999999772 2455554431 22345566654332
Q ss_pred --CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCC
Q 009640 278 --TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGL 355 (530)
Q Consensus 278 --~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl 355 (530)
...-|++||++|.+ ....-+.||+.++.-
T Consensus 105 ~~~~~kV~iI~~ae~m-------------------------------------------------~~~AaNaLLKtLEEP 135 (319)
T PRK06090 105 QLNGYRLFVIEPADAM-------------------------------------------------NESASNALLKTLEEP 135 (319)
T ss_pred ccCCceEEEecchhhh-------------------------------------------------CHHHHHHHHHHhcCC
Confidence 23469999999987 123567899999853
Q ss_pred ccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHH
Q 009640 356 WSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKN 405 (530)
Q Consensus 356 ~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~ 405 (530)
..+.++|++|+.++.|-|.+++ |. ..|.|+.|+.++....+..
T Consensus 136 ----p~~t~fiL~t~~~~~lLpTI~S--RC-q~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 136 ----APNCLFLLVTHNQKRLLPTIVS--RC-QQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred ----CCCeEEEEEECChhhChHHHHh--cc-eeEeCCCCCHHHHHHHHHH
Confidence 4678999999999999999998 76 4689999999988877754
No 200
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.70 E-value=2.6e-07 Score=95.82 Aligned_cols=88 Identities=14% Similarity=0.193 Sum_probs=66.1
Q ss_pred CcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecCccCChH
Q 009640 192 TFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELTKVTDNS 268 (530)
Q Consensus 192 ~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~~~~~~~ 268 (530)
.|++++|....-+.+.+.+....... ..+||+|+|||||+++|++|-... +.+++.+++..+.. .
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~~~-----------~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~-~ 71 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAPLD-----------KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE-N 71 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhCCC-----------CCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCH-H
Confidence 46778888888888888887776543 489999999999999999998765 46899999988643 3
Q ss_pred HHHHHH-H-----------------hcCCCeEEEEcCccch
Q 009640 269 ELRALL-L-----------------QTTNRSIIVIEDIDCS 291 (530)
Q Consensus 269 ~L~~l~-~-----------------~~~~~sII~IDeID~~ 291 (530)
.+...+ . .......|||||||.+
T Consensus 72 ~~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L 112 (326)
T PRK11608 72 LLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATA 112 (326)
T ss_pred HHHHHHccccccccCCcccccCCchhccCCCeEEeCChhhC
Confidence 333322 1 1234578999999987
No 201
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.69 E-value=1.2e-07 Score=88.93 Aligned_cols=84 Identities=18% Similarity=0.192 Sum_probs=58.3
Q ss_pred cCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecCccCChHHHHHH
Q 009640 197 ALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELTKVTDNSELRAL 273 (530)
Q Consensus 197 ~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~~~~~~~~L~~l 273 (530)
+|....-+.+++.+......+ ..+||+|++||||+.+|++|-+.. +.+|+.++++.+..+.--..+
T Consensus 2 iG~s~~m~~~~~~~~~~a~~~-----------~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~L 70 (168)
T PF00158_consen 2 IGESPAMKRLREQAKRAASSD-----------LPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESEL 70 (168)
T ss_dssp S--SHHHHHHHHHHHHHTTST-----------S-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHhCCC-----------CCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhh
Confidence 455555556666666655543 589999999999999999999876 468999999988544333445
Q ss_pred HHhc-----------------CCCeEEEEcCccch
Q 009640 274 LLQT-----------------TNRSIIVIEDIDCS 291 (530)
Q Consensus 274 ~~~~-----------------~~~sII~IDeID~~ 291 (530)
|-.. ....+|||||||.+
T Consensus 71 FG~~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L 105 (168)
T PF00158_consen 71 FGHEKGAFTGARSDKKGLLEQANGGTLFLDEIEDL 105 (168)
T ss_dssp HEBCSSSSTTTSSEBEHHHHHTTTSEEEEETGGGS
T ss_pred hccccccccccccccCCceeeccceEEeecchhhh
Confidence 5321 24579999999998
No 202
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=8.2e-08 Score=96.17 Aligned_cols=65 Identities=37% Similarity=0.473 Sum_probs=53.9
Q ss_pred CceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccC-------C-hHHHHHHHHhc------CCCeEEEEcCccchh
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVT-------D-NSELRALLLQT------TNRSIIVIEDIDCSV 292 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~-------~-~~~L~~l~~~~------~~~sII~IDeID~~~ 292 (530)
+.++||.||.|+|||.||..+|..|+.+|..-+.+.+. + +.-|.+|+..+ ..+.||+|||||.+.
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIa 175 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIA 175 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhh
Confidence 56799999999999999999999999999988887763 1 23366666655 468999999999983
No 203
>PRK06921 hypothetical protein; Provisional
Probab=98.68 E-value=6.9e-08 Score=97.18 Aligned_cols=63 Identities=30% Similarity=0.377 Sum_probs=44.9
Q ss_pred CceEEEECCCCCChhHHHHHHHHHc----CCcEEEEecCccCCh-----HHHHHHHHhcCCCeEEEEcCccc
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYL----CYDVYDLELTKVTDN-----SELRALLLQTTNRSIIVIEDIDC 290 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l----~~~i~~l~l~~~~~~-----~~L~~l~~~~~~~sII~IDeID~ 290 (530)
..+++|+||||||||+|+.|||+++ +..++.+....+... ..+...+.......+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~~~~~~~~~~~~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDFDLLEAKLNRMKKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 4689999999999999999999987 456666665433110 11223344456789999999964
No 204
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.62 E-value=3.9e-07 Score=102.89 Aligned_cols=90 Identities=17% Similarity=0.182 Sum_probs=67.4
Q ss_pred CCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecCccCCh
Q 009640 191 STFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELTKVTDN 267 (530)
Q Consensus 191 ~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~~~~~~ 267 (530)
.+|++++|....-+.+.+.+....... ..+||+|+|||||+++|++|.+.. +.+++.+++..+..+
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a~~~-----------~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~ 390 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAAKSS-----------FPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE 390 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHhCcC-----------CCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH
Confidence 357888888777777777777666543 479999999999999999999876 468999999887543
Q ss_pred HHHHHHHHh--------------cCCCeEEEEcCccch
Q 009640 268 SELRALLLQ--------------TTNRSIIVIEDIDCS 291 (530)
Q Consensus 268 ~~L~~l~~~--------------~~~~sII~IDeID~~ 291 (530)
.-...+|-. ......|||||||.+
T Consensus 391 ~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l 428 (638)
T PRK11388 391 ALAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYL 428 (638)
T ss_pred HHHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhC
Confidence 222334431 134678999999987
No 205
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.62 E-value=1.4e-07 Score=95.33 Aligned_cols=134 Identities=20% Similarity=0.359 Sum_probs=78.7
Q ss_pred CceEEEECCCCCChhHHHHHHHHHcCCcE---EEEecCccCChHHHHHHHHhc-------------CCCeEEEEcCccch
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYLCYDV---YDLELTKVTDNSELRALLLQT-------------TNRSIIVIEDIDCS 291 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l~~~i---~~l~l~~~~~~~~L~~l~~~~-------------~~~sII~IDeID~~ 291 (530)
.+.+||.||+|||||++++..-..+.-+- ..+..+...+...+.+++... .++.|+||||+..-
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiDDlN~p 112 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFIDDLNMP 112 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCTTECECTTEEEEEESSSEEEEEEETTT-S
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEecccCCC
Confidence 36899999999999999988776664333 344555544445555554332 24579999999864
Q ss_pred hhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhh-cc--CCccCC------CCC
Q 009640 292 VDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNF-TD--GLWSCC------SEE 362 (530)
Q Consensus 292 ~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~-lD--gl~s~~------~~~ 362 (530)
- .+....+..+ +||.+ || |.+... =..
T Consensus 113 ~-------------------------------------------~d~ygtq~~i-ElLRQ~i~~~g~yd~~~~~~~~i~~ 148 (272)
T PF12775_consen 113 Q-------------------------------------------PDKYGTQPPI-ELLRQLIDYGGFYDRKKLEWKSIED 148 (272)
T ss_dssp ----------------------------------------------TTS--HHH-HHHHHHHHCSEEECTTTTEEEEECS
T ss_pred C-------------------------------------------CCCCCCcCHH-HHHHHHHHhcCcccCCCcEEEEEee
Confidence 1 0111112222 34433 22 322211 134
Q ss_pred eEEEEEeCCCC---CCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhC
Q 009640 363 KIIVFTTNHRD---SVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLG 408 (530)
Q Consensus 363 ~ivI~TTN~~~---~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~ 408 (530)
+.+|+|+|... .+++.|+| .|- .+.+++|+.++...|+..++.
T Consensus 149 i~~vaa~~p~~Gr~~is~R~~r--~f~-i~~~~~p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 149 IQFVAAMNPTGGRNPISPRFLR--HFN-ILNIPYPSDESLNTIFSSILQ 194 (272)
T ss_dssp EEEEEEESSTTT--SHHHHHHT--TEE-EEE----TCCHHHHHHHHHHH
T ss_pred eEEEEecCCCCCCCCCChHHhh--heE-EEEecCCChHHHHHHHHHHHh
Confidence 66788887532 48889998 774 589999999999888877664
No 206
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.57 E-value=2.3e-06 Score=87.12 Aligned_cols=62 Identities=23% Similarity=0.365 Sum_probs=42.7
Q ss_pred cccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcC--CcEEEEecC
Q 009640 193 FETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLC--YDVYDLELT 262 (530)
Q Consensus 193 f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~--~~i~~l~l~ 262 (530)
=+-++|+.+.++..-- +...++. |+-..+|+|+.||||||||.||-+||.+|| .+|..++.+
T Consensus 38 ~dG~VGQ~~AReAaGv-Iv~mik~-------gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgs 101 (450)
T COG1224 38 GDGLVGQEEAREAAGV-IVKMIKQ-------GKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGS 101 (450)
T ss_pred CCcccchHHHHHhhhH-HHHHHHh-------CcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccc
Confidence 3667888887765332 2233322 233468999999999999999999999996 344444433
No 207
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=3.2e-07 Score=95.17 Aligned_cols=64 Identities=30% Similarity=0.453 Sum_probs=56.1
Q ss_pred CceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccCC--------hHHHHHHHHhc------CCCeEEEEcCccch
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVTD--------NSELRALLLQT------TNRSIIVIEDIDCS 291 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~~--------~~~L~~l~~~~------~~~sII~IDeID~~ 291 (530)
+..+||.||.|+|||.|+..+|..++.+|...+++.+.. ++-|.+|+..+ .+..||||||+|.+
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi 303 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKI 303 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhh
Confidence 568999999999999999999999999999999888732 45578888776 46899999999998
No 208
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.56 E-value=2.6e-06 Score=96.95 Aligned_cols=90 Identities=14% Similarity=0.252 Sum_probs=67.6
Q ss_pred CCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecCccCC
Q 009640 190 PSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELTKVTD 266 (530)
Q Consensus 190 ~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~~~~~ 266 (530)
...|++++|.....+.+.+.+..+.... ..+||+|+||||||++|++|.... +.+++.+++..+..
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~a~~~-----------~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~ 440 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMVAQSD-----------STVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA 440 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHHhCCC-----------CCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCCh
Confidence 3578899999988888888888766543 489999999999999999998865 56889988877632
Q ss_pred hHHHHH-HHH-----------------hcCCCeEEEEcCccch
Q 009640 267 NSELRA-LLL-----------------QTTNRSIIVIEDIDCS 291 (530)
Q Consensus 267 ~~~L~~-l~~-----------------~~~~~sII~IDeID~~ 291 (530)
. .+.. +|. ......+|||||||.+
T Consensus 441 ~-~~~~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L 482 (686)
T PRK15429 441 G-LLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDM 482 (686)
T ss_pred h-HhhhhhcCcccccccccccchhhHHHhcCCCeEEEechhhC
Confidence 1 1111 111 2234689999999987
No 209
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.54 E-value=1.8e-07 Score=84.61 Aligned_cols=77 Identities=22% Similarity=0.333 Sum_probs=52.5
Q ss_pred CChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCC---cEEEEecCccCChHHHHHHH
Q 009640 198 LEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCY---DVYDLELTKVTDNSELRALL 274 (530)
Q Consensus 198 ~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~---~i~~l~l~~~~~~~~L~~l~ 274 (530)
|....-+.+.+.+....... ..+||+|+|||||+++|++|....+. .++.+++.... .+++
T Consensus 2 G~S~~~~~l~~~l~~~a~~~-----------~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----~~~l 65 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERLAKSS-----------SPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----AELL 65 (138)
T ss_dssp -SCHHHHHHHHHHHHHHCSS-----------S-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----HHHH
T ss_pred CCCHHHHHHHHHHHHHhCCC-----------CcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----HHHH
Confidence 33445566777776666543 58999999999999999999998764 33333333322 3455
Q ss_pred HhcCCCeEEEEcCccch
Q 009640 275 LQTTNRSIIVIEDIDCS 291 (530)
Q Consensus 275 ~~~~~~sII~IDeID~~ 291 (530)
..+ ....|+|+|||.+
T Consensus 66 ~~a-~~gtL~l~~i~~L 81 (138)
T PF14532_consen 66 EQA-KGGTLYLKNIDRL 81 (138)
T ss_dssp HHC-TTSEEEEECGCCS
T ss_pred HHc-CCCEEEECChHHC
Confidence 554 7788999999998
No 210
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.54 E-value=5.5e-07 Score=98.13 Aligned_cols=48 Identities=25% Similarity=0.441 Sum_probs=36.1
Q ss_pred CCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc
Q 009640 190 PSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 190 ~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l 252 (530)
...|+++.|+..+++.+.-.+ . ....++|.||||||||+++++|+..+
T Consensus 188 ~~d~~dv~Gq~~~~~al~~aa----~-----------~g~~vlliG~pGsGKTtlar~l~~ll 235 (499)
T TIGR00368 188 DLDLKDIKGQQHAKRALEIAA----A-----------GGHNLLLFGPPGSGKTMLASRLQGIL 235 (499)
T ss_pred CCCHHHhcCcHHHHhhhhhhc----c-----------CCCEEEEEecCCCCHHHHHHHHhccc
Confidence 347899999888765443322 1 12469999999999999999999865
No 211
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.51 E-value=9e-07 Score=92.37 Aligned_cols=157 Identities=19% Similarity=0.248 Sum_probs=103.8
Q ss_pred CCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCc--------------
Q 009640 190 PSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYD-------------- 255 (530)
Q Consensus 190 ~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~-------------- 255 (530)
...|.-++|++.+|..+.-.-. .|.-.|+|+-|+.|||||++++|||..|.--
T Consensus 13 ~~pf~aivGqd~lk~aL~l~av-------------~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~ 79 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLNAV-------------DPQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDD 79 (423)
T ss_pred ccchhhhcCchHHHHHHhhhhc-------------ccccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCC
Confidence 4467788999998887655322 1234699999999999999999999988211
Q ss_pred --------------------------EEEEecCcc----CChHHHHHHHHh-----------cCCCeEEEEcCccchhhh
Q 009640 256 --------------------------VYDLELTKV----TDNSELRALLLQ-----------TTNRSIIVIEDIDCSVDL 294 (530)
Q Consensus 256 --------------------------i~~l~l~~~----~~~~~L~~l~~~-----------~~~~sII~IDeID~~~~~ 294 (530)
+..+.++.. .+.-++.+.+.. ..++.|++|||+..+-
T Consensus 80 P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~-- 157 (423)
T COG1239 80 PEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLD-- 157 (423)
T ss_pred hhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEecccccc--
Confidence 111111111 111123333331 1356899999998762
Q ss_pred hhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhh---------ccCCccCCCCCeEE
Q 009640 295 TADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNF---------TDGLWSCCSEEKII 365 (530)
Q Consensus 295 ~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~---------lDgl~s~~~~~~iv 365 (530)
......||+. .+|+.-...-..++
T Consensus 158 -----------------------------------------------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvl 190 (423)
T COG1239 158 -----------------------------------------------DHLVDALLDVAAEGVNDVEREGISIRHPARFLL 190 (423)
T ss_pred -----------------------------------------------HHHHHHHHHHHHhCCceeeeCceeeccCccEEE
Confidence 1233344444 35555444566889
Q ss_pred EEEeCCC-CCCChhhhcCCceeEEEEeCCC-CHHHHHHHHHHhhCCc
Q 009640 366 VFTTNHR-DSVDPALIRCGRMDVHVSLGTC-GPHAFKVLAKNYLGIE 410 (530)
Q Consensus 366 I~TTN~~-~~LDpALlRpGR~d~~I~~~~p-~~~~r~~i~~~~l~~~ 410 (530)
|+|+|.- ..|-|-|+. ||..+|.+.+| +.+.|.+|.++-+...
T Consensus 191 igTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~rv~Ii~r~~~f~ 235 (423)
T COG1239 191 IGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEERVEIIRRRLAFE 235 (423)
T ss_pred EeecCccccccchhhHh--hhcceeeccCCCCHHHHHHHHHHHHHhh
Confidence 9999975 478899999 99999999887 5678888887766543
No 212
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.50 E-value=7e-06 Score=90.45 Aligned_cols=91 Identities=19% Similarity=0.224 Sum_probs=65.7
Q ss_pred CCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecCccC
Q 009640 189 HPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELTKVT 265 (530)
Q Consensus 189 ~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~~~~ 265 (530)
...+|++++|....-+.+++.+...... ...+||+|++||||+++|+++-... +.+++.+++..+.
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~~-----------~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLAML-----------DAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 4457899999887777777777665543 2469999999999999999986654 4578999988875
Q ss_pred ChHHHH-HHHH-----------------hcCCCeEEEEcCccch
Q 009640 266 DNSELR-ALLL-----------------QTTNRSIIVIEDIDCS 291 (530)
Q Consensus 266 ~~~~L~-~l~~-----------------~~~~~sII~IDeID~~ 291 (530)
. ..+. .+|- +......|||||||.+
T Consensus 268 ~-~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L 310 (520)
T PRK10820 268 D-DVVESELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEM 310 (520)
T ss_pred H-HHHHHHhcCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhC
Confidence 3 2232 2331 1133578999999987
No 213
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.47 E-value=1.6e-06 Score=95.13 Aligned_cols=91 Identities=16% Similarity=0.267 Sum_probs=69.5
Q ss_pred CCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecCccC
Q 009640 189 HPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELTKVT 265 (530)
Q Consensus 189 ~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~~~~ 265 (530)
...+|++++|....-+.+.+.+..+.... ..+||+|++||||+++|++|-+.. +.+++.+++..+.
T Consensus 207 ~~~~f~~iiG~S~~m~~~~~~i~~~A~~~-----------~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~ 275 (526)
T TIGR02329 207 TRYRLDDLLGASAPMEQVRALVRLYARSD-----------ATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIA 275 (526)
T ss_pred cccchhheeeCCHHHHHHHHHHHHHhCCC-----------CcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCC
Confidence 34678999999888888888887776654 489999999999999999998765 5689999988874
Q ss_pred ChHHHHH-HHH------------------hcCCCeEEEEcCccch
Q 009640 266 DNSELRA-LLL------------------QTTNRSIIVIEDIDCS 291 (530)
Q Consensus 266 ~~~~L~~-l~~------------------~~~~~sII~IDeID~~ 291 (530)
. ..+.. +|- +......|||||||.+
T Consensus 276 e-~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~L 319 (526)
T TIGR02329 276 E-SLLEAELFGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEM 319 (526)
T ss_pred h-hHHHHHhcCCcccccccccccccccchhhcCCceEEecChHhC
Confidence 3 22332 222 1124568999999987
No 214
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.47 E-value=4.3e-07 Score=98.71 Aligned_cols=47 Identities=28% Similarity=0.377 Sum_probs=33.0
Q ss_pred CcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcC
Q 009640 192 TFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLC 253 (530)
Q Consensus 192 ~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~ 253 (530)
.|.++.|+..+++.+.- - ......++|+||||||||+|++.|+..+.
T Consensus 189 d~~~v~Gq~~~~~al~l----a-----------a~~G~~llliG~~GsGKTtLak~L~gllp 235 (506)
T PRK09862 189 DLSDVIGQEQGKRGLEI----T-----------AAGGHNLLLIGPPGTGKTMLASRINGLLP 235 (506)
T ss_pred CeEEEECcHHHHhhhhe----e-----------ccCCcEEEEECCCCCcHHHHHHHHhccCC
Confidence 67777776655443221 1 11235699999999999999999998763
No 215
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.46 E-value=7.9e-06 Score=89.85 Aligned_cols=88 Identities=14% Similarity=0.172 Sum_probs=66.9
Q ss_pred CcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecCccCChH
Q 009640 192 TFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELTKVTDNS 268 (530)
Q Consensus 192 ~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~~~~~~~ 268 (530)
.+.+++|.....+.+.+.+......+ ..+||+|++||||+++|++|.... +.+++.+++..+.. .
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~-----------~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~-~ 252 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASD-----------LNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPE-S 252 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCC-----------CcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCCh-H
Confidence 46788998888888888887765543 589999999999999999999875 46899999888753 2
Q ss_pred HHH-HHHH-----------------hcCCCeEEEEcCccch
Q 009640 269 ELR-ALLL-----------------QTTNRSIIVIEDIDCS 291 (530)
Q Consensus 269 ~L~-~l~~-----------------~~~~~sII~IDeID~~ 291 (530)
.+. .+|- .......|||||||.+
T Consensus 253 ~~e~~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L 293 (509)
T PRK05022 253 LAESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGEL 293 (509)
T ss_pred HHHHHhcCccccccCCCcccCCcchhhcCCCEEEecChhhC
Confidence 222 2222 1234567999999987
No 216
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.46 E-value=1.8e-07 Score=81.01 Aligned_cols=61 Identities=23% Similarity=0.369 Sum_probs=38.7
Q ss_pred EEEECCCCCChhHHHHHHHHHcCCcEEEEecCccCChHHHHHHHHhcCCCeEEEEcCccch
Q 009640 231 YLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVTDNSELRALLLQTTNRSIIVIEDIDCS 291 (530)
Q Consensus 231 ~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~~~~~L~~l~~~~~~~sII~IDeID~~ 291 (530)
+.||||||+|||+++..+|..+...+-.-....+-....-.+.+.......++++||+...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~~~w~gY~~q~vvi~DD~~~~ 61 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGDKFWDGYQGQPVVIIDDFGQD 61 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCccchhhccCCCcEEEEeecCcc
Confidence 4799999999999999999887533211111111111112234455567789999999875
No 217
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.45 E-value=2e-06 Score=84.90 Aligned_cols=160 Identities=17% Similarity=0.250 Sum_probs=106.6
Q ss_pred cCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc-CCcEE------
Q 009640 185 VPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL-CYDVY------ 257 (530)
Q Consensus 185 ~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l-~~~i~------ 257 (530)
+..+.|.+++.+....+....+.... ...+ -..+|+|||+|+||-|.+-++-+++ |.-+.
T Consensus 4 vdkyrpksl~~l~~~~e~~~~Lksl~----~~~d---------~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~ 70 (351)
T KOG2035|consen 4 VDKYRPKSLDELIYHEELANLLKSLS----STGD---------FPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIET 70 (351)
T ss_pred hhhcCcchhhhcccHHHHHHHHHHhc----ccCC---------CCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeee
Confidence 66778999999888777666554422 2122 1479999999999999999999987 21111
Q ss_pred ----------------------EEecCccCCh--HHHHHHHHhc---C------C--CeEEEEcCccchhhhhhhhhhcc
Q 009640 258 ----------------------DLELTKVTDN--SELRALLLQT---T------N--RSIIVIEDIDCSVDLTADRMLKS 302 (530)
Q Consensus 258 ----------------------~l~l~~~~~~--~~L~~l~~~~---~------~--~sII~IDeID~~~~~~~~r~~~~ 302 (530)
.++.++.+.. .-+.+++.+. . + =-+|+|-|.|.+-
T Consensus 71 ~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT---------- 140 (351)
T KOG2035|consen 71 RTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELT---------- 140 (351)
T ss_pred EEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhh----------
Confidence 1112222211 1144444432 1 1 1488999999871
Q ss_pred cCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcC
Q 009640 303 SNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRC 382 (530)
Q Consensus 303 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRp 382 (530)
+....+|-..|+-+.+.| -+|+.+|...++-+++.+
T Consensus 141 ---------------------------------------~dAQ~aLRRTMEkYs~~~----RlIl~cns~SriIepIrS- 176 (351)
T KOG2035|consen 141 ---------------------------------------RDAQHALRRTMEKYSSNC----RLILVCNSTSRIIEPIRS- 176 (351)
T ss_pred ---------------------------------------HHHHHHHHHHHHHHhcCc----eEEEEecCcccchhHHhh-
Confidence 112345666677665544 488899999999999997
Q ss_pred CceeEEEEeCCCCHHHHHHHHHHhhCCcCcc
Q 009640 383 GRMDVHVSLGTCGPHAFKVLAKNYLGIESHH 413 (530)
Q Consensus 383 GR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~ 413 (530)
|. ..|.++.|+.++.-.++...+..+...
T Consensus 177 -RC-l~iRvpaps~eeI~~vl~~v~~kE~l~ 205 (351)
T KOG2035|consen 177 -RC-LFIRVPAPSDEEITSVLSKVLKKEGLQ 205 (351)
T ss_pred -he-eEEeCCCCCHHHHHHHHHHHHHHhccc
Confidence 65 558999999999999988887665544
No 218
>PHA02624 large T antigen; Provisional
Probab=98.44 E-value=1.1e-06 Score=96.02 Aligned_cols=123 Identities=20% Similarity=0.237 Sum_probs=80.7
Q ss_pred cCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccCChHHHHHHHHhcCCCeEEEEcCccchhhhhhhhhhccc
Q 009640 224 GRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVTDNSELRALLLQTTNRSIIVIEDIDCSVDLTADRMLKSS 303 (530)
Q Consensus 224 g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~~~~~L~~l~~~~~~~sII~IDeID~~~~~~~~r~~~~~ 303 (530)
|+|.++.+|||||||||||+++.+|++.++-.+..++... +.+.-.|.-+...-+++|||+-.-.-
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt----~ks~FwL~pl~D~~~~l~dD~t~~~~---------- 492 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPP----DKLNFELGCAIDQFMVVFEDVKGQPA---------- 492 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCc----chhHHHhhhhhhceEEEeeecccccc----------
Confidence 6788899999999999999999999999966666665332 23334455556667999999864210
Q ss_pred CCccccccccchhhhhhccccccccCCCCCCCCCC-cchhhhHHHHhhhccCCccCCC-----CC-----eEEEEEeCCC
Q 009640 304 NTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGE-ESGRVTLSGLLNFTDGLWSCCS-----EE-----KIIVFTTNHR 372 (530)
Q Consensus 304 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ls~LLn~lDgl~s~~~-----~~-----~ivI~TTN~~ 372 (530)
.+. .-. +..-..+..|-|.|||--.-+- .. --.|.|||.
T Consensus 493 ---------------------------~~~--~Lp~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne- 542 (647)
T PHA02624 493 ---------------------------DNK--DLPSGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE- 542 (647)
T ss_pred ---------------------------ccc--cCCcccccchhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-
Confidence 000 000 0011235678899998721110 00 135678886
Q ss_pred CCCChhhhcCCceeEEEEeC
Q 009640 373 DSVDPALIRCGRMDVHVSLG 392 (530)
Q Consensus 373 ~~LDpALlRpGR~d~~I~~~ 392 (530)
..||..|.- ||-+.|.|.
T Consensus 543 y~iP~T~~~--Rf~~~~~F~ 560 (647)
T PHA02624 543 YLIPQTVKA--RFAKVLDFK 560 (647)
T ss_pred cccchhHHH--HHHHhcccc
Confidence 577888887 998888886
No 219
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.43 E-value=2.6e-06 Score=93.53 Aligned_cols=89 Identities=16% Similarity=0.225 Sum_probs=68.3
Q ss_pred CCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHH-----------cCCcEEEE
Q 009640 191 STFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANY-----------LCYDVYDL 259 (530)
Q Consensus 191 ~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~-----------l~~~i~~l 259 (530)
.+|++++|....-+.+.+.+..+.... ..+||+|+|||||+++|++|-+. .+.+|+.+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~s~-----------~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARSS-----------AAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCC-----------CcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 568999999888888888887766543 48999999999999999999887 46789999
Q ss_pred ecCccCChHHHHH-HHH------------------hcCCCeEEEEcCccch
Q 009640 260 ELTKVTDNSELRA-LLL------------------QTTNRSIIVIEDIDCS 291 (530)
Q Consensus 260 ~l~~~~~~~~L~~-l~~------------------~~~~~sII~IDeID~~ 291 (530)
++..+.. ..+.. +|- +......|||||||.+
T Consensus 285 nCaal~e-~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~L 334 (538)
T PRK15424 285 NCGAIAE-SLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEM 334 (538)
T ss_pred ecccCCh-hhHHHHhcCCccccccCccccccCCchhccCCCEEEEcChHhC
Confidence 9988753 22322 222 1223568999999987
No 220
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.42 E-value=4e-06 Score=82.57 Aligned_cols=64 Identities=22% Similarity=0.289 Sum_probs=55.2
Q ss_pred CceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccCChHHHHHHHHhc-CCCeEEEEcCccch
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVTDNSELRALLLQT-TNRSIIVIEDIDCS 291 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~~~~~L~~l~~~~-~~~sII~IDeID~~ 291 (530)
..|-.++||+|||||.+++++|..+|..++..+.++-.+-..+.++|..+ ...+.+++||++.+
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G~~~~GaW~cfdefnrl 96 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKGLAQSGAWLCFDEFNRL 96 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHHHHHHT-EEEEETCCCS
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHHHhhcCchhhhhhhhhh
Confidence 35778999999999999999999999999999999998999999999876 67899999999987
No 221
>PF13173 AAA_14: AAA domain
Probab=98.41 E-value=7.3e-07 Score=79.57 Aligned_cols=63 Identities=24% Similarity=0.446 Sum_probs=47.4
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcC--CcEEEEecCccCChH----HHHHHHHhc--CCCeEEEEcCccch
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLC--YDVYDLELTKVTDNS----ELRALLLQT--TNRSIIVIEDIDCS 291 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~--~~i~~l~l~~~~~~~----~L~~l~~~~--~~~sII~IDeID~~ 291 (530)
+-++|+||.|+|||++++.++..+. .++..+++....... ++.+.+.+. ..+.+||||||..+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPDLLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhhhHHHHHHhhccCCcEEEEehhhhh
Confidence 4689999999999999999999886 777788776653221 133444443 36799999999976
No 222
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.39 E-value=1.1e-05 Score=88.57 Aligned_cols=130 Identities=15% Similarity=0.234 Sum_probs=84.3
Q ss_pred eEEEECCCCCChhHHHHHHHHHc----------CCcEEEEecCccCChHH----------------------HHHHHH--
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYL----------CYDVYDLELTKVTDNSE----------------------LRALLL-- 275 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l----------~~~i~~l~l~~~~~~~~----------------------L~~l~~-- 275 (530)
.+.+.|-||||||.++..+-++| .++++.++...+....+ |..-|.
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 57788999999999999999877 46677777655533222 222233
Q ss_pred -hcCCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccC
Q 009640 276 -QTTNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDG 354 (530)
Q Consensus 276 -~~~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg 354 (530)
.-..++||+|||+|.++. .++. -|-|++|=
T Consensus 504 k~~~~~~VvLiDElD~Lvt----------------------------------------------r~Qd---VlYn~fdW 534 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVT----------------------------------------------RSQD---VLYNIFDW 534 (767)
T ss_pred CCCCCCEEEEeccHHHHhc----------------------------------------------ccHH---HHHHHhcC
Confidence 114679999999999851 0122 35555552
Q ss_pred CccCCCCCeEEEEEeCCCCCCChhhhc---CCcee-EEEEeCCCCHHHHHHHHHHhhCCc
Q 009640 355 LWSCCSEEKIIVFTTNHRDSVDPALIR---CGRMD-VHVSLGTCGPHAFKVLAKNYLGIE 410 (530)
Q Consensus 355 l~s~~~~~~ivI~TTN~~~~LDpALlR---pGR~d-~~I~~~~p~~~~r~~i~~~~l~~~ 410 (530)
... .+...+||+..|.. +|++.++- .-|++ ..|.|.+.+.++..+|+..-|...
T Consensus 535 pt~-~~sKLvvi~IaNTm-dlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~ 592 (767)
T KOG1514|consen 535 PTL-KNSKLVVIAIANTM-DLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL 592 (767)
T ss_pred CcC-CCCceEEEEecccc-cCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcch
Confidence 222 13445666666654 34444442 13665 568899999999999998877655
No 223
>PHA00729 NTP-binding motif containing protein
Probab=98.36 E-value=3.8e-06 Score=81.96 Aligned_cols=135 Identities=15% Similarity=0.176 Sum_probs=73.6
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCcEEEEecCc----------cCChHHHHHHHH----hcCCCeEEEEcCccchhhhh
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTK----------VTDNSELRALLL----QTTNRSIIVIEDIDCSVDLT 295 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~----------~~~~~~L~~l~~----~~~~~sII~IDeID~~~~~~ 295 (530)
.++|+|+||||||+||.+||+.++.++..+.... +.+..++...+. ......+|+|||+-.-+..
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid~~~Ll~~L~~a~~~~~~~dlLIIDd~G~~~~~- 97 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFELPDALEKIQDAIDNDYRIPLIIFDDAGIWLSK- 97 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEEHHHHHHHHHHHHhcCCCCCEEEEeCCchhhcc-
Confidence 7999999999999999999999875444432111 112233333332 2233468999997543200
Q ss_pred hhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCC
Q 009640 296 ADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSV 375 (530)
Q Consensus 296 ~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~L 375 (530)
. .. +.........+-+.+. + .-.++++++..++.|
T Consensus 98 ~-----------------------------------~w----h~~~~~~yf~L~~aLr---S---R~~l~il~~ls~edL 132 (226)
T PHA00729 98 Y-----------------------------------VW----YEDYMKTFYKIYALIR---T---RVSAVIFTTPSPEDL 132 (226)
T ss_pred c-----------------------------------ch----hhhccchHHHHHHHHH---h---hCcEEEEecCCHHHH
Confidence 0 00 0000011122333332 1 224688888888888
Q ss_pred ChhhhcCCceeEEEEeC-CCCHHHHHHHHHHhhCCc
Q 009640 376 DPALIRCGRMDVHVSLG-TCGPHAFKVLAKNYLGIE 410 (530)
Q Consensus 376 DpALlRpGR~d~~I~~~-~p~~~~r~~i~~~~l~~~ 410 (530)
-..|...|-....|.=. --...++..|.+.+....
T Consensus 133 ~~~Lr~Rg~~~~kI~en~~~~~~~~~~~~~~~~~~~ 168 (226)
T PHA00729 133 AFYLREKGWYQIRVTMVNRKTMTARATLYSKDFGRN 168 (226)
T ss_pred HHHHHhCCCcHHHhhhcccCcccchhhHHHHHHhhc
Confidence 88887756555444432 222345566776666544
No 224
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.34 E-value=5.2e-06 Score=80.41 Aligned_cols=133 Identities=28% Similarity=0.350 Sum_probs=70.9
Q ss_pred CceEEEECCCCCChhHHHHHHHHHcCCcEE----EEecCccC--------------------------------------
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYLCYDVY----DLELTKVT-------------------------------------- 265 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~----~l~l~~~~-------------------------------------- 265 (530)
...++||||.|+|||+|++.+.+.+.-.-+ ........
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLS 99 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcch
Confidence 368999999999999999999999843221 11111000
Q ss_pred --ChHHHHHHHHh---cCCCeEEEEcCccchh-hhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCc
Q 009640 266 --DNSELRALLLQ---TTNRSIIVIEDIDCSV-DLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEE 339 (530)
Q Consensus 266 --~~~~L~~l~~~---~~~~sII~IDeID~~~-~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (530)
....+..++.. ...+.||+|||+|.+. . ..
T Consensus 100 ~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~--------------------------------------------~~ 135 (234)
T PF01637_consen 100 EDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIA--------------------------------------------SE 135 (234)
T ss_dssp GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBC--------------------------------------------TT
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhc--------------------------------------------cc
Confidence 01112222222 2345999999999883 1 01
Q ss_pred chhhhHHHHhhhccCCccCCCCCeEEEEEeCCCC------CCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCC
Q 009640 340 SGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRD------SVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGI 409 (530)
Q Consensus 340 ~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~------~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~ 409 (530)
.....+..|.+.++.... ...+.+|+++.... .-.+.+. +|+.. +.+++.+.++...++...+..
T Consensus 136 ~~~~~~~~l~~~~~~~~~--~~~~~~v~~~S~~~~~~~~~~~~~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~~~ 206 (234)
T PF01637_consen 136 EDKDFLKSLRSLLDSLLS--QQNVSIVITGSSDSLMEEFLDDKSPLF--GRFSH-IELKPLSKEEAREFLKELFKE 206 (234)
T ss_dssp TTHHHHHHHHHHHHH------TTEEEEEEESSHHHHHHTT-TTSTTT--T---E-EEE----HHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHhhccc--cCCceEEEECCchHHHHHhhcccCccc--cccce-EEEeeCCHHHHHHHHHHHHHH
Confidence 123455667777776443 24454555444321 1122233 48877 999999999999999886543
No 225
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.34 E-value=1.2e-06 Score=77.56 Aligned_cols=64 Identities=34% Similarity=0.544 Sum_probs=42.6
Q ss_pred CceEEEECCCCCChhHHHHHHHHHc--------CCcEEEEecCccCCh---------------------HHHHHHHHhc-
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYL--------CYDVYDLELTKVTDN---------------------SELRALLLQT- 277 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l--------~~~i~~l~l~~~~~~---------------------~~L~~l~~~~- 277 (530)
.+.++++||||+|||+++..++..+ ..+++.+++....+. .++.+.+.+.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 3568999999999999999999988 677777765544322 2222222222
Q ss_pred --CCCeEEEEcCccch
Q 009640 278 --TNRSIIVIEDIDCS 291 (530)
Q Consensus 278 --~~~sII~IDeID~~ 291 (530)
....+|+|||+|.+
T Consensus 84 ~~~~~~~lviDe~~~l 99 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHL 99 (131)
T ss_dssp HHCTEEEEEEETTHHH
T ss_pred HhcCCeEEEEeChHhc
Confidence 22359999999986
No 226
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.33 E-value=9.2e-06 Score=82.16 Aligned_cols=89 Identities=15% Similarity=0.216 Sum_probs=56.0
Q ss_pred cCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc---------CCcEEEEecCccCCh
Q 009640 197 ALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL---------CYDVYDLELTKVTDN 267 (530)
Q Consensus 197 ~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---------~~~i~~l~l~~~~~~ 267 (530)
++.+..++ +.+.++..+..|.. .-..++||+|++|.|||++++..+... ..+++.+.....-+.
T Consensus 37 IgY~~A~~-~L~~L~~Ll~~P~~------~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~ 109 (302)
T PF05621_consen 37 IGYPRAKE-ALDRLEELLEYPKR------HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDE 109 (302)
T ss_pred ecCHHHHH-HHHHHHHHHhCCcc------cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCCh
Confidence 34444444 55557777766642 224689999999999999999998754 235556654333222
Q ss_pred HHHHHH------------------------HHhcCCCeEEEEcCccchh
Q 009640 268 SELRAL------------------------LLQTTNRSIIVIEDIDCSV 292 (530)
Q Consensus 268 ~~L~~l------------------------~~~~~~~sII~IDeID~~~ 292 (530)
..+-.. +.+..+.-+|+|||++.++
T Consensus 110 ~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lL 158 (302)
T PF05621_consen 110 RRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLL 158 (302)
T ss_pred HHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHh
Confidence 221111 2223466799999999985
No 227
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.32 E-value=1.2e-05 Score=80.03 Aligned_cols=52 Identities=25% Similarity=0.399 Sum_probs=37.4
Q ss_pred ccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcC
Q 009640 194 ETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLC 253 (530)
Q Consensus 194 ~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~ 253 (530)
.-++|+...++.- -.+...++.+.. ..|++||.||||||||.||-||+.+||
T Consensus 38 ~g~vGQ~~AReAa-giivdlik~Kkm-------aGravLlaGppgtGKTAlAlaisqELG 89 (456)
T KOG1942|consen 38 AGFVGQENAREAA-GIIVDLIKSKKM-------AGRAVLLAGPPGTGKTALALAISQELG 89 (456)
T ss_pred cccccchhhhhhh-hHHHHHHHhhhc-------cCcEEEEecCCCCchhHHHHHHHHHhC
Confidence 4567877776542 223344444432 247999999999999999999999995
No 228
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.32 E-value=3.1e-06 Score=96.56 Aligned_cols=128 Identities=19% Similarity=0.266 Sum_probs=77.6
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCCcE-------EEEecCccCC-hHHH-HHHH-----HhcCCCeEEEEcCccchhhh
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCYDV-------YDLELTKVTD-NSEL-RALL-----LQTTNRSIIVIEDIDCSVDL 294 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~~i-------~~l~l~~~~~-~~~L-~~l~-----~~~~~~sII~IDeID~~~~~ 294 (530)
-.+||.|+||||||.+++++++...... ..+.++.... .... .... .......+++|||+|.+-
T Consensus 493 ihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~~~le~GaLvlAdgGtL~IDEidkms-- 570 (915)
T PTZ00111 493 INVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRAMIQPGAVVLANGGVCCIDELDKCH-- 570 (915)
T ss_pred ceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCcccccCCcEEEcCCCeEEecchhhCC--
Confidence 3699999999999999999998654332 2333322110 0000 0000 111346799999999871
Q ss_pred hhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhcc---------CCccCCCCCeEE
Q 009640 295 TADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTD---------GLWSCCSEEKII 365 (530)
Q Consensus 295 ~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lD---------gl~s~~~~~~iv 365 (530)
....+.|+..|+ |+...-..+..|
T Consensus 571 -----------------------------------------------~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rV 603 (915)
T PTZ00111 571 -----------------------------------------------NESRLSLYEVMEQQTVTIAKAGIVATLKAETAI 603 (915)
T ss_pred -----------------------------------------------HHHHHHHHHHHhCCEEEEecCCcceecCCCeEE
Confidence 112234444442 222111345678
Q ss_pred EEEeCCCC-------------CCChhhhcCCceeEE-EEeCCCCHHHHHHHHHHhh
Q 009640 366 VFTTNHRD-------------SVDPALIRCGRMDVH-VSLGTCGPHAFKVLAKNYL 407 (530)
Q Consensus 366 I~TTN~~~-------------~LDpALlRpGR~d~~-I~~~~p~~~~r~~i~~~~l 407 (530)
|+|+|..+ .|+|+|+. |||.. +.++.|+.+.=+.|..+.+
T Consensus 604 IAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDLIf~l~D~~d~~~D~~lA~hI~ 657 (915)
T PTZ00111 604 LASCNPINSRYNKNKAVIENINISPSLFT--RFDLIYLVLDHIDQDTDQLISLSIA 657 (915)
T ss_pred EEEcCCcccccCcccCcccccCCChHHhh--hhcEEEEecCCCChHHHHHHHHHHH
Confidence 99999852 47899999 99965 5568888877666655544
No 229
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.32 E-value=5.9e-05 Score=77.13 Aligned_cols=122 Identities=15% Similarity=0.219 Sum_probs=88.4
Q ss_pred CceEEEECCCCCChhHHHHHHHHHcCC-------------cEEEEec-CccCChHHHHHHHHhc-------CCCeEEEEc
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYLCY-------------DVYDLEL-TKVTDNSELRALLLQT-------TNRSIIVIE 286 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l~~-------------~i~~l~l-~~~~~~~~L~~l~~~~-------~~~sII~ID 286 (530)
...|||||++|+||+.++.++|+.+-. ++..++. ....+-.+++.+.... ..+-|++||
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir~l~~~~~~~~~~~~~~KvvII~ 97 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFLSAINKLYFSSFVQSQKKILIIK 97 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHHHHHHHhccCCcccCCceEEEEe
Confidence 468999999999999999999988711 2233331 1112335676665544 256799999
Q ss_pred CccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEE
Q 009640 287 DIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIV 366 (530)
Q Consensus 287 eID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI 366 (530)
++|.+- ....+.||..|+.. ++..++|
T Consensus 98 ~~e~m~-------------------------------------------------~~a~NaLLK~LEEP----p~~t~~i 124 (299)
T PRK07132 98 NIEKTS-------------------------------------------------NSLLNALLKTIEEP----PKDTYFL 124 (299)
T ss_pred cccccC-------------------------------------------------HHHHHHHHHHhhCC----CCCeEEE
Confidence 998861 22456899999864 4668888
Q ss_pred EEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHH
Q 009640 367 FTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKN 405 (530)
Q Consensus 367 ~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~ 405 (530)
++|+.+++|-|.+.+ |. ..++|.+++.++....+..
T Consensus 125 l~~~~~~kll~TI~S--Rc-~~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 125 LTTKNINKVLPTIVS--RC-QVFNVKEPDQQKILAKLLS 160 (299)
T ss_pred EEeCChHhChHHHHh--Ce-EEEECCCCCHHHHHHHHHH
Confidence 888899999999987 54 4489999998888766654
No 230
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.27 E-value=1.5e-05 Score=80.72 Aligned_cols=111 Identities=16% Similarity=0.218 Sum_probs=78.1
Q ss_pred CceEEEECCCCCChhHHHHHHHHHcCC----------------cEEEEecCc---cCChHHHHHHHHhc------CCCeE
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYLCY----------------DVYDLELTK---VTDNSELRALLLQT------TNRSI 282 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l~~----------------~i~~l~l~~---~~~~~~L~~l~~~~------~~~sI 282 (530)
+..|||+||+|+||+.+|.++|..+-. |++.+.... ..+-..++.+.... ...-|
T Consensus 19 ~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~kv 98 (290)
T PRK05917 19 PSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPYKI 98 (290)
T ss_pred CeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCceE
Confidence 458999999999999999999988732 344443221 12344555554443 23458
Q ss_pred EEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCC
Q 009640 283 IVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEE 362 (530)
Q Consensus 283 I~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~ 362 (530)
++||++|.+ +...-+.||+.|+.- .++
T Consensus 99 ~ii~~ad~m-------------------------------------------------t~~AaNaLLK~LEEP----p~~ 125 (290)
T PRK05917 99 YIIHEADRM-------------------------------------------------TLDAISAFLKVLEDP----PQH 125 (290)
T ss_pred EEEechhhc-------------------------------------------------CHHHHHHHHHHhhcC----CCC
Confidence 889999987 123457899999863 467
Q ss_pred eEEEEEeCCCCCCChhhhcCCceeEEEEeCCC
Q 009640 363 KIIVFTTNHRDSVDPALIRCGRMDVHVSLGTC 394 (530)
Q Consensus 363 ~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p 394 (530)
.++|++|+.++.|.|.+++ |+ ..+.|+.+
T Consensus 126 ~~fiL~~~~~~~ll~TI~S--Rc-q~~~~~~~ 154 (290)
T PRK05917 126 GVIILTSAKPQRLPPTIRS--RS-LSIHIPME 154 (290)
T ss_pred eEEEEEeCChhhCcHHHHh--cc-eEEEccch
Confidence 8999999999999999997 66 33566643
No 231
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.26 E-value=2.2e-05 Score=84.04 Aligned_cols=73 Identities=27% Similarity=0.405 Sum_probs=56.0
Q ss_pred CCccccCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 180 SGWVSVPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 180 ~~w~~~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
..| +....|.+.++|+.......+|..++..+..... ....+-+||.||+||||||.++-||.++|+.+..=
T Consensus 70 elW--~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~------~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew 141 (634)
T KOG1970|consen 70 ELW--VEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTP------KLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEW 141 (634)
T ss_pred chh--HHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhcc------CCCceEEEEeCCCCCCchhHHHHHHHhhCceeeee
Confidence 468 8889999999999988877777777763322111 11235688999999999999999999999988754
Q ss_pred e
Q 009640 260 E 260 (530)
Q Consensus 260 ~ 260 (530)
.
T Consensus 142 ~ 142 (634)
T KOG1970|consen 142 S 142 (634)
T ss_pred c
Confidence 3
No 232
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=98.24 E-value=7.8e-06 Score=93.71 Aligned_cols=175 Identities=22% Similarity=0.292 Sum_probs=112.1
Q ss_pred CccccCCCCCCCcccccCChhhhHHHHHHHHHHHc-ChhhHhhhcCCC-Cc-eEEEECCCCCChhHHHHHHHHHcCCcEE
Q 009640 181 GWVSVPFRHPSTFETLALEPQLKKQITEDLTAFAN-GKEFYHRVGRAW-KR-GYLLYGPPGSGKSSLIAAMANYLCYDVY 257 (530)
Q Consensus 181 ~w~~~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~-~~~~y~~~g~~~-~r-G~LL~GPPGTGKTsLa~AiA~~l~~~i~ 257 (530)
.| ...+.|.....+.+....-..+.+.+..+-+ .+--|...+-.. .. .+|++||||.|||+.+.++|..++++++
T Consensus 309 ~~--~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~ 386 (871)
T KOG1968|consen 309 GW--TEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVV 386 (871)
T ss_pred cc--ccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhccccee
Confidence 46 4456666667787777766677777766622 122222221111 12 3699999999999999999999999999
Q ss_pred EEecCccCChHHHHHHHHhc-------------------CC-CeEEEEcCccchhhhhhhhhhcccCCccccccccchhh
Q 009640 258 DLELTKVTDNSELRALLLQT-------------------TN-RSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSI 317 (530)
Q Consensus 258 ~l~l~~~~~~~~L~~l~~~~-------------------~~-~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~ 317 (530)
..+.+...+...+...+..+ .. --||++||+|-+++ .+|+
T Consensus 387 E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~--~dRg------------------ 446 (871)
T KOG1968|consen 387 EKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFG--EDRG------------------ 446 (871)
T ss_pred ecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccc--hhhh------------------
Confidence 99999887766665544332 11 23999999998752 1211
Q ss_pred hhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHH
Q 009640 318 KEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPH 397 (530)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~ 397 (530)
.-.-++.|.+. ..+=||+|+|...-.....+. |-+.-|+|+.|+.+
T Consensus 447 -----------------------~v~~l~~l~~k---------s~~Piv~~cndr~~p~sr~~~--~~~~~l~f~kP~~~ 492 (871)
T KOG1968|consen 447 -----------------------GVSKLSSLCKK---------SSRPLVCTCNDRNLPKSRALS--RACSDLRFSKPSSE 492 (871)
T ss_pred -----------------------hHHHHHHHHHh---------ccCCeEEEecCCCCccccchh--hhcceeeecCCcHH
Confidence 11123344441 234578888876655543333 44477899999999
Q ss_pred HHHHHHHHhhCCcC
Q 009640 398 AFKVLAKNYLGIES 411 (530)
Q Consensus 398 ~r~~i~~~~l~~~~ 411 (530)
+...-+..++..+.
T Consensus 493 ~i~~ri~si~~se~ 506 (871)
T KOG1968|consen 493 LIRSRIMSICKSEG 506 (871)
T ss_pred HHHhhhhhhhcccc
Confidence 88777766665443
No 233
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.24 E-value=1.7e-05 Score=78.95 Aligned_cols=112 Identities=14% Similarity=0.166 Sum_probs=77.4
Q ss_pred CCceEEEECCCCCChhHHHHHHHHHcC----------------------CcEEEEecCc-cCChHHHHHHHHhc---C--
Q 009640 227 WKRGYLLYGPPGSGKSSLIAAMANYLC----------------------YDVYDLELTK-VTDNSELRALLLQT---T-- 278 (530)
Q Consensus 227 ~~rG~LL~GPPGTGKTsLa~AiA~~l~----------------------~~i~~l~l~~-~~~~~~L~~l~~~~---~-- 278 (530)
.+..|||+||+|+||..+|.++|..+- -|++.+.... ...-.+++++.... +
T Consensus 6 ~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~e 85 (261)
T PRK05818 6 KTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSVE 85 (261)
T ss_pred CCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCchh
Confidence 356899999999999999999998772 1223221111 12234455444322 1
Q ss_pred --CCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCc
Q 009640 279 --NRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLW 356 (530)
Q Consensus 279 --~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~ 356 (530)
..-|++|+++|.+ .....+.||..++.-
T Consensus 86 ~~~~KV~II~~ae~m-------------------------------------------------~~~AaNaLLK~LEEP- 115 (261)
T PRK05818 86 SNGKKIYIIYGIEKL-------------------------------------------------NKQSANSLLKLIEEP- 115 (261)
T ss_pred cCCCEEEEeccHhhh-------------------------------------------------CHHHHHHHHHhhcCC-
Confidence 2468888888876 233568899999853
Q ss_pred cCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCC
Q 009640 357 SCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTC 394 (530)
Q Consensus 357 s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p 394 (530)
..+.++|++|+.++.|-|.+++ |.-. +.|+.+
T Consensus 116 ---p~~t~fiLit~~~~~lLpTI~S--RCq~-~~~~~~ 147 (261)
T PRK05818 116 ---PKNTYGIFTTRNENNILNTILS--RCVQ-YVVLSK 147 (261)
T ss_pred ---CCCeEEEEEECChHhCchHhhh--heee-eecCCh
Confidence 5678999999999999999998 7643 556555
No 234
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=5.3e-06 Score=94.49 Aligned_cols=92 Identities=21% Similarity=0.321 Sum_probs=62.3
Q ss_pred ccccCChhhhHHHHHHHHHHHcChhhHhhhcC-CCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecCccC----
Q 009640 194 ETLALEPQLKKQITEDLTAFANGKEFYHRVGR-AWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELTKVT---- 265 (530)
Q Consensus 194 ~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~-~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~~~~---- 265 (530)
+.|+|+++....|-+.+.....+ ++. .+.--+||.||.|+|||-||+|+|.++ .-.++.++++++.
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~g------l~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evsk 635 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAG------LKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSK 635 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcc------cCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhh
Confidence 34677888777777777665532 111 133458999999999999999999998 4457778877632
Q ss_pred ---------ChHHHHHHHHhc--CCCeEEEEcCccch
Q 009640 266 ---------DNSELRALLLQT--TNRSIIVIEDIDCS 291 (530)
Q Consensus 266 ---------~~~~L~~l~~~~--~~~sII~IDeID~~ 291 (530)
+....-.+.... ..-|||+|||||..
T Consensus 636 ligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkA 672 (898)
T KOG1051|consen 636 LIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKA 672 (898)
T ss_pred ccCCCcccccchhHHHHHHHHhcCCceEEEEechhhc
Confidence 122222333332 34599999999975
No 235
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.21 E-value=4.7e-05 Score=82.53 Aligned_cols=86 Identities=13% Similarity=0.198 Sum_probs=59.4
Q ss_pred ccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecCccCChHHH
Q 009640 194 ETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELTKVTDNSEL 270 (530)
Q Consensus 194 ~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~~~~~~~~L 270 (530)
..+++....-.++...+...... ...+++.|.+||||+++++++.... +.+++.+++..+. ...+
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~~-----------~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~-~~~~ 201 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSRS-----------DITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIP-KDLI 201 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhCc-----------CCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCC-HHHH
Confidence 34666666666666666553322 2478999999999999999998875 4688999988763 2333
Q ss_pred HHHH-H-----------------hcCCCeEEEEcCccch
Q 009640 271 RALL-L-----------------QTTNRSIIVIEDIDCS 291 (530)
Q Consensus 271 ~~l~-~-----------------~~~~~sII~IDeID~~ 291 (530)
...+ - .......|||||||.+
T Consensus 202 ~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l 240 (463)
T TIGR01818 202 ESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDM 240 (463)
T ss_pred HHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhC
Confidence 3333 1 1134678999999987
No 236
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=3.6e-06 Score=89.17 Aligned_cols=48 Identities=29% Similarity=0.480 Sum_probs=39.6
Q ss_pred CCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc
Q 009640 190 PSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 190 ~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l 252 (530)
...|.||.|++..|+.+.-.. +-..++||+||||||||++|.-|..-|
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAA---------------AGgHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAA---------------AGGHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHH---------------hcCCcEEEecCCCCchHHhhhhhcccC
Confidence 457999999999999776533 224689999999999999999887766
No 237
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=1.9e-05 Score=80.03 Aligned_cols=68 Identities=19% Similarity=0.252 Sum_probs=48.0
Q ss_pred ccCChhhhHHHHHHHHHHHcChhhHhhh-cCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCc
Q 009640 196 LALEPQLKKQITEDLTAFANGKEFYHRV-GRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTK 263 (530)
Q Consensus 196 l~~~~~~k~~i~~~l~~~l~~~~~y~~~-g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~ 263 (530)
++|+.+.|+.+--.+..-..+...-..+ .--.|+++|+.||.|+|||-+|+.+|+..+.+|+.++.+.
T Consensus 17 IIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATK 85 (444)
T COG1220 17 IIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATK 85 (444)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeee
Confidence 6888888887765554322111111111 1123679999999999999999999999999999887553
No 238
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.20 E-value=5.9e-05 Score=81.97 Aligned_cols=87 Identities=11% Similarity=0.170 Sum_probs=60.1
Q ss_pred cccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecCccCChHH
Q 009640 193 FETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELTKVTDNSE 269 (530)
Q Consensus 193 f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~~~~~~~~ 269 (530)
+.++.+.....+.+.+.+...... ...+|+.|++||||+++|+++.... +.+++.+++..+.. ..
T Consensus 137 ~~~lig~s~~~~~l~~~~~~~~~~-----------~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~-~~ 204 (469)
T PRK10923 137 TTDIIGEAPAMQDVFRIIGRLSRS-----------SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPK-DL 204 (469)
T ss_pred cccceecCHHHHHHHHHHHHHhcc-----------CCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCH-HH
Confidence 456677665555565555443322 3579999999999999999999886 46899999988733 33
Q ss_pred HHHHH-Hh-----------------cCCCeEEEEcCccch
Q 009640 270 LRALL-LQ-----------------TTNRSIIVIEDIDCS 291 (530)
Q Consensus 270 L~~l~-~~-----------------~~~~sII~IDeID~~ 291 (530)
+...+ .. ......|||||||.+
T Consensus 205 ~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l 244 (469)
T PRK10923 205 IESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDM 244 (469)
T ss_pred HHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccC
Confidence 33332 21 124568999999987
No 239
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.20 E-value=8.6e-06 Score=85.68 Aligned_cols=92 Identities=15% Similarity=0.218 Sum_probs=68.9
Q ss_pred CCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc----CCcEEEEecCcc
Q 009640 189 HPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL----CYDVYDLELTKV 264 (530)
Q Consensus 189 ~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l----~~~i~~l~l~~~ 264 (530)
....+++++|....-+++++.+..+-. -...+|++|++||||+.+|++|.... ..+++.+++..+
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~~ap-----------~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~ 141 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKAYAP-----------SGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAY 141 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHhhCC-----------CCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHh
Confidence 445678888887777777777766322 23579999999999999999997443 568999999998
Q ss_pred CChHHHHHHHHhc-----------------CCCeEEEEcCccch
Q 009640 265 TDNSELRALLLQT-----------------TNRSIIVIEDIDCS 291 (530)
Q Consensus 265 ~~~~~L~~l~~~~-----------------~~~sII~IDeID~~ 291 (530)
..+-....+|--. ....+||+|||..+
T Consensus 142 ~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~L 185 (403)
T COG1221 142 SENLQEAELFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRL 185 (403)
T ss_pred CcCHHHHHHhccccceeecccCCcCchheecCCCEEehhhhhhC
Confidence 7776666665411 23579999999987
No 240
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.20 E-value=2.3e-06 Score=89.71 Aligned_cols=99 Identities=16% Similarity=0.344 Sum_probs=62.5
Q ss_pred CCCCceEEEECCCCCChhHHHHHHHHHcCCc------EEEEe------cCccC-ChHHHHHHHHhcCCC-eEEEEcCccc
Q 009640 225 RAWKRGYLLYGPPGSGKSSLIAAMANYLCYD------VYDLE------LTKVT-DNSELRALLLQTTNR-SIIVIEDIDC 290 (530)
Q Consensus 225 ~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~------i~~l~------l~~~~-~~~~L~~l~~~~~~~-sII~IDeID~ 290 (530)
.+.++|++||||+|+|||+|.-...+.+... +...- +..+. ....+..+.....+. .||+|||+..
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~~~~lLcfDEF~V 138 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAKESRLLCFDEFQV 138 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHhcCCEEEEeeeec
Confidence 4568999999999999999999998887441 11110 00011 112233333343333 4999999985
Q ss_pred hhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeC
Q 009640 291 SVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTN 370 (530)
Q Consensus 291 ~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN 370 (530)
- +-.....+..|++.+ + ..++++|+|+|
T Consensus 139 ~----------------------------------------------DiaDAmil~rLf~~l---~---~~gvvlVaTSN 166 (362)
T PF03969_consen 139 T----------------------------------------------DIADAMILKRLFEAL---F---KRGVVLVATSN 166 (362)
T ss_pred c----------------------------------------------chhHHHHHHHHHHHH---H---HCCCEEEecCC
Confidence 3 222456777777765 2 36789999999
Q ss_pred C-CCCC
Q 009640 371 H-RDSV 375 (530)
Q Consensus 371 ~-~~~L 375 (530)
+ |+.|
T Consensus 167 ~~P~~L 172 (362)
T PF03969_consen 167 RPPEDL 172 (362)
T ss_pred CChHHH
Confidence 7 4444
No 241
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.19 E-value=4.7e-05 Score=82.33 Aligned_cols=86 Identities=15% Similarity=0.198 Sum_probs=57.9
Q ss_pred ccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecCccCChHHH
Q 009640 194 ETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELTKVTDNSEL 270 (530)
Q Consensus 194 ~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~~~~~~~~L 270 (530)
..+.+....-..+.+.+...... ...+|++|++||||+++++++.... +.+++.+++..+.. ..+
T Consensus 143 ~~ii~~S~~~~~~~~~~~~~a~~-----------~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~-~~~ 210 (457)
T PRK11361 143 GHILTNSPAMMDICKDTAKIALS-----------QASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPE-SLL 210 (457)
T ss_pred cceecccHHHhHHHHHHHHHcCC-----------CcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCH-HHH
Confidence 34555544444555555444433 2479999999999999999998765 57899999887743 333
Q ss_pred HHH-HHh-----------------cCCCeEEEEcCccch
Q 009640 271 RAL-LLQ-----------------TTNRSIIVIEDIDCS 291 (530)
Q Consensus 271 ~~l-~~~-----------------~~~~sII~IDeID~~ 291 (530)
... |-. .....+|||||||.+
T Consensus 211 ~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l 249 (457)
T PRK11361 211 ESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEM 249 (457)
T ss_pred HHHhcCCCCCCCCCCCCCCCCceEECCCCEEEEechhhC
Confidence 332 221 123578999999997
No 242
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.17 E-value=6.5e-05 Score=81.04 Aligned_cols=87 Identities=16% Similarity=0.227 Sum_probs=58.5
Q ss_pred cccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecCccCChHH
Q 009640 193 FETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELTKVTDNSE 269 (530)
Q Consensus 193 f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~~~~~~~~ 269 (530)
+..+.+.....+.+...+...... ...++++|++||||+++|+++.... +.+++.+++..+.. ..
T Consensus 138 ~~~lig~s~~~~~l~~~i~~~a~~-----------~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~-~~ 205 (445)
T TIGR02915 138 LRGLITSSPGMQKICRTIEKIAPS-----------DITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPE-NL 205 (445)
T ss_pred ccceeecCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCCh-HH
Confidence 344555555555555555443322 3578999999999999999998776 46789999888743 33
Q ss_pred HHHHHHh------------------cCCCeEEEEcCccch
Q 009640 270 LRALLLQ------------------TTNRSIIVIEDIDCS 291 (530)
Q Consensus 270 L~~l~~~------------------~~~~sII~IDeID~~ 291 (530)
+...+.. ......|||||||.+
T Consensus 206 ~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l 245 (445)
T TIGR02915 206 LESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDL 245 (445)
T ss_pred HHHHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhC
Confidence 3333211 134578999999987
No 243
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.17 E-value=4.4e-05 Score=77.58 Aligned_cols=118 Identities=20% Similarity=0.236 Sum_probs=81.7
Q ss_pred CceEEEECCCCCChhHHHHHHHHHcC------------------------CcEEEEecCc-cCChHHHHHHHHhc-----
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYLC------------------------YDVYDLELTK-VTDNSELRALLLQT----- 277 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l~------------------------~~i~~l~l~~-~~~~~~L~~l~~~~----- 277 (530)
+.+|||+|| +||+++|.++|..+- -|++.+.... ...-..+|.+....
T Consensus 24 ~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~p~ 101 (290)
T PRK07276 24 NHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQSGY 101 (290)
T ss_pred ceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhCcc
Confidence 458999996 689999999998662 2333333221 12345666665443
Q ss_pred -CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCc
Q 009640 278 -TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLW 356 (530)
Q Consensus 278 -~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~ 356 (530)
...-|++||++|.+- ...-+.||+.|+.-
T Consensus 102 ~~~~kV~II~~ad~m~-------------------------------------------------~~AaNaLLKtLEEP- 131 (290)
T PRK07276 102 EGKQQVFIIKDADKMH-------------------------------------------------VNAANSLLKVIEEP- 131 (290)
T ss_pred cCCcEEEEeehhhhcC-------------------------------------------------HHHHHHHHHHhcCC-
Confidence 245699999999871 23467899999853
Q ss_pred cCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHH
Q 009640 357 SCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAK 404 (530)
Q Consensus 357 s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~ 404 (530)
+.+.++|++|+.++.|-|.+++ |. .+|.|+. +.+....++.
T Consensus 132 ---p~~t~~iL~t~~~~~lLpTI~S--Rc-q~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 132 ---QSEIYIFLLTNDENKVLPTIKS--RT-QIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred ---CCCeEEEEEECChhhCchHHHH--cc-eeeeCCC-cHHHHHHHHH
Confidence 4568999999999999999998 76 5578865 5555555554
No 244
>PF05729 NACHT: NACHT domain
Probab=98.16 E-value=1.7e-05 Score=72.75 Aligned_cols=24 Identities=46% Similarity=0.717 Sum_probs=21.7
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l 252 (530)
|-++++|+||+|||++++.++..+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHH
Confidence 357899999999999999999877
No 245
>PHA02774 E1; Provisional
Probab=98.16 E-value=2.1e-05 Score=85.83 Aligned_cols=58 Identities=24% Similarity=0.436 Sum_probs=43.0
Q ss_pred cCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEE-EecCccCChHHHHHHHHhcCCCeEEEEcCc
Q 009640 224 GRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYD-LELTKVTDNSELRALLLQTTNRSIIVIEDI 288 (530)
Q Consensus 224 g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~-l~l~~~~~~~~L~~l~~~~~~~sII~IDeI 288 (530)
|.|.++.++||||||||||+++.+|++.++..++. ++..+ . -.|..+....|++|||+
T Consensus 430 ~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s---~----FwLqpl~d~ki~vlDD~ 488 (613)
T PHA02774 430 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKS---H----FWLQPLADAKIALLDDA 488 (613)
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECcc---c----cccchhccCCEEEEecC
Confidence 45667899999999999999999999999765544 44321 1 11344455679999999
No 246
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.15 E-value=4.7e-05 Score=91.65 Aligned_cols=60 Identities=17% Similarity=0.197 Sum_probs=42.2
Q ss_pred ccCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCC
Q 009640 184 SVPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCY 254 (530)
Q Consensus 184 ~~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~ 254 (530)
.+...++..+++++|.+...+++...+.. +....+-+-++||+|.||||||+++++.+..
T Consensus 174 ~l~~~~~~~~~~~vG~~~~l~~l~~lL~l-----------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~ 233 (1153)
T PLN03210 174 KLNLTPSNDFEDFVGIEDHIAKMSSLLHL-----------ESEEVRMVGIWGSSGIGKTTIARALFSRLSR 233 (1153)
T ss_pred hhccccCcccccccchHHHHHHHHHHHcc-----------ccCceEEEEEEcCCCCchHHHHHHHHHHHhh
Confidence 34444566788888887776666654421 1122456889999999999999999988743
No 247
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.14 E-value=6.8e-05 Score=79.10 Aligned_cols=185 Identities=17% Similarity=0.172 Sum_probs=113.2
Q ss_pred ccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc-----CCcEEEEecCccCCh-
Q 009640 194 ETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL-----CYDVYDLELTKVTDN- 267 (530)
Q Consensus 194 ~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l-----~~~i~~l~l~~~~~~- 267 (530)
.++.|-+.....+.+.+...+.... ...+.+.|-||||||.+..-+-..+ ....+.++.+++...
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle~~t---------~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLELNT---------SGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhhccc---------CcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 4566666666666665555554332 4678899999999999887665444 234466776654221
Q ss_pred --------------------HHHHHHHHhc----CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccc
Q 009640 268 --------------------SELRALLLQT----TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSR 323 (530)
Q Consensus 268 --------------------~~L~~l~~~~----~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~ 323 (530)
.++...|.+. ..+-|||+||+|.++. .
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~t--r--------------------------- 271 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLIT--R--------------------------- 271 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhh--c---------------------------
Confidence 1122233322 3467999999999841 0
Q ss_pred cccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhc----CCceeEEEEeCCCCHHHH
Q 009640 324 IASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIR----CGRMDVHVSLGTCGPHAF 399 (530)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlR----pGR~d~~I~~~~p~~~~r 399 (530)
++.++-.|. +++.+ .+..+|+|+..|..+.-|..|.| .+.-...+.|++.+.++.
T Consensus 272 -----------------~~~vLy~lF-ewp~l---p~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI 330 (529)
T KOG2227|consen 272 -----------------SQTVLYTLF-EWPKL---PNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQI 330 (529)
T ss_pred -----------------ccceeeeeh-hcccC---CcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHH
Confidence 111221221 22322 24678889999998887766653 355567899999999999
Q ss_pred HHHHHHhhCCcCccchHH-HHHHHHHhCCCCCHHHHHHHH
Q 009640 400 KVLAKNYLGIESHHALFD-VVESCIRAGGALTPAQIGEVL 438 (530)
Q Consensus 400 ~~i~~~~l~~~~~~~~~~-~i~~l~~~~~~~spadi~~~l 438 (530)
..|++.-+.........+ .++-+|..-.+.|+ |+..+|
T Consensus 331 ~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlRkaL 369 (529)
T KOG2227|consen 331 VEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLRKAL 369 (529)
T ss_pred HHHHHHHHhcccccccchHHHHHHHHHhccCch-hHHHHH
Confidence 999998887654432333 45555554444554 444443
No 248
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.08 E-value=3.6e-05 Score=77.72 Aligned_cols=147 Identities=22% Similarity=0.235 Sum_probs=77.0
Q ss_pred CceEEEECCCCCChhHHHHHHHHH--c--CCcE-EEEecCccCC------------------------hHHHHHHHHhc-
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANY--L--CYDV-YDLELTKVTD------------------------NSELRALLLQT- 277 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~--l--~~~i-~~l~l~~~~~------------------------~~~L~~l~~~~- 277 (530)
.+-+.|+|++|+|||+||..+++. . .++. +-+++....+ ...+...+.+.
T Consensus 19 ~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L 98 (287)
T PF00931_consen 19 VRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRELL 98 (287)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHHH
T ss_pred eEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhh
Confidence 456889999999999999999977 3 2332 2333332211 11222222222
Q ss_pred -CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCc
Q 009640 278 -TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLW 356 (530)
Q Consensus 278 -~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~ 356 (530)
..+++|||||++... .+..+...+-
T Consensus 99 ~~~~~LlVlDdv~~~~---------------------------------------------------~~~~l~~~~~--- 124 (287)
T PF00931_consen 99 KDKRCLLVLDDVWDEE---------------------------------------------------DLEELREPLP--- 124 (287)
T ss_dssp CCTSEEEEEEEE-SHH---------------------------------------------------HH-------H---
T ss_pred ccccceeeeeeecccc---------------------------------------------------cccccccccc---
Confidence 458999999998641 1111222111
Q ss_pred cCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcC---ccchHHHHHHHHHhCCCCCHHH
Q 009640 357 SCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIES---HHALFDVVESCIRAGGALTPAQ 433 (530)
Q Consensus 357 s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~---~~~~~~~i~~l~~~~~~~spad 433 (530)
.+..+.-||.||....-.. .+ +.-+..|+++..+.++-..++..+.+... .....+...+++.. -+-.|-.
T Consensus 125 -~~~~~~kilvTTR~~~v~~-~~---~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~-c~glPLa 198 (287)
T PF00931_consen 125 -SFSSGSKILVTTRDRSVAG-SL---GGTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEK-CGGLPLA 198 (287)
T ss_dssp -CHHSS-EEEEEESCGGGGT-TH---HSCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHH-TTT-HHH
T ss_pred -ccccccccccccccccccc-cc---cccccccccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence 1112334666776532211 11 11267899999999999999999987544 12123344555553 3445544
Q ss_pred H
Q 009640 434 I 434 (530)
Q Consensus 434 i 434 (530)
|
T Consensus 199 l 199 (287)
T PF00931_consen 199 L 199 (287)
T ss_dssp H
T ss_pred c
Confidence 4
No 249
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.06 E-value=3.9e-05 Score=69.81 Aligned_cols=30 Identities=33% Similarity=0.556 Sum_probs=24.1
Q ss_pred EEEECCCCCChhHHHHHHHHHc---CCcEEEEe
Q 009640 231 YLLYGPPGSGKSSLIAAMANYL---CYDVYDLE 260 (530)
Q Consensus 231 ~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~ 260 (530)
++++||||+|||+++.+++..+ +..+..++
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 6899999999999999999887 34444443
No 250
>PRK15115 response regulator GlrR; Provisional
Probab=97.99 E-value=0.00019 Score=77.34 Aligned_cols=62 Identities=19% Similarity=0.285 Sum_probs=46.5
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecCccCChHHHHH-HHH-----------------hcCCCeEEEEcC
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELTKVTDNSELRA-LLL-----------------QTTNRSIIVIED 287 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~~~~~~~~L~~-l~~-----------------~~~~~sII~IDe 287 (530)
..++++|++||||+++|+++.... +.+++.+++..+.. ..+.. +|. .......|||||
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~ 236 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPE-QLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCH-HHHHHHhcCCCcCCCCCCccCCCCcEEECCCCEEEEEc
Confidence 478999999999999999998875 47899999887633 23332 221 123457899999
Q ss_pred ccch
Q 009640 288 IDCS 291 (530)
Q Consensus 288 ID~~ 291 (530)
||.+
T Consensus 237 i~~l 240 (444)
T PRK15115 237 IGDM 240 (444)
T ss_pred cccC
Confidence 9987
No 251
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.97 E-value=3.5e-05 Score=85.58 Aligned_cols=120 Identities=18% Similarity=0.148 Sum_probs=83.6
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCC--cEEEEecCc----cCChHHHHHHHHh-----------cCCCeEEEEcCccch
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCY--DVYDLELTK----VTDNSELRALLLQ-----------TTNRSIIVIEDIDCS 291 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~--~i~~l~l~~----~~~~~~L~~l~~~-----------~~~~sII~IDeID~~ 291 (530)
.|+||-|++|||||+++++++..+.. ++..+.++. +.+.-+|...+.. .....||||||+..+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n~~ 105 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVLAMAERL 105 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccCCEEEecCcccC
Confidence 69999999999999999999999854 666654432 1223334444332 123579999999876
Q ss_pred hhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhcc---------CCccCCCCC
Q 009640 292 VDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTD---------GLWSCCSEE 362 (530)
Q Consensus 292 ~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lD---------gl~s~~~~~ 362 (530)
...+++.|+..|+ |........
T Consensus 106 -------------------------------------------------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~ 136 (584)
T PRK13406 106 -------------------------------------------------EPGTAARLAAALDTGEVRLERDGLALRLPAR 136 (584)
T ss_pred -------------------------------------------------CHHHHHHHHHHHhCCcEEEEECCcEEecCCC
Confidence 2346777887774 333322344
Q ss_pred eEEEEEeCCC---CCCChhhhcCCceeEEEEeCCCCHHHH
Q 009640 363 KIIVFTTNHR---DSVDPALIRCGRMDVHVSLGTCGPHAF 399 (530)
Q Consensus 363 ~ivI~TTN~~---~~LDpALlRpGR~d~~I~~~~p~~~~r 399 (530)
.++|+|-|.. +.|.++|+. ||+.+|.+++|+..+.
T Consensus 137 F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v~~~~~~~~ 174 (584)
T PRK13406 137 FGLVALDEGAEEDERAPAALAD--RLAFHLDLDGLALRDA 174 (584)
T ss_pred cEEEecCCChhcccCCCHHhHh--heEEEEEcCCCChHHh
Confidence 5677764433 469999999 9999999999987643
No 252
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=97.96 E-value=2.1e-05 Score=85.85 Aligned_cols=96 Identities=26% Similarity=0.350 Sum_probs=57.6
Q ss_pred cccCChhhhHHHHHHHHHHHcChhhHhhhc-CCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEec-------Cc-cC
Q 009640 195 TLALEPQLKKQITEDLTAFANGKEFYHRVG-RAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLEL-------TK-VT 265 (530)
Q Consensus 195 ~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g-~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l-------~~-~~ 265 (530)
+|.+.+++|+.+.-.| |-....-+..-| ..---++||+|-||||||.|.+.+++.+-.-+|.--- +. +.
T Consensus 430 sIye~edvKkglLLqL--fGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVt 507 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQL--FGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVT 507 (804)
T ss_pred hhhcccchhhhHHHHH--hcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEE
Confidence 4556677777664322 333333233322 1112359999999999999999999988666664321 11 11
Q ss_pred ChHHHHHHHHhc-----CCCeEEEEcCccchh
Q 009640 266 DNSELRALLLQT-----TNRSIIVIEDIDCSV 292 (530)
Q Consensus 266 ~~~~L~~l~~~~-----~~~sII~IDeID~~~ 292 (530)
.+.+-++++.+. ....|..|||+|.+-
T Consensus 508 rd~dtkqlVLesGALVLSD~GiCCIDEFDKM~ 539 (804)
T KOG0478|consen 508 KDPDTRQLVLESGALVLSDNGICCIDEFDKMS 539 (804)
T ss_pred ecCccceeeeecCcEEEcCCceEEchhhhhhh
Confidence 122333444433 567899999999983
No 253
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=97.95 E-value=2.3e-05 Score=81.01 Aligned_cols=77 Identities=18% Similarity=0.260 Sum_probs=51.9
Q ss_pred cccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcC--CcEEEEecCccCC----
Q 009640 193 FETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLC--YDVYDLELTKVTD---- 266 (530)
Q Consensus 193 f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~--~~i~~l~l~~~~~---- 266 (530)
.+-++|+.+.++..--.+ ..++... -..|++||.||||||||.||-|||.+|| .+|..++.+++.+
T Consensus 23 ~~GlVGQ~~AReAagiiv-~mIk~~K-------~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~k 94 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIV-DMIKEGK-------IAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEVK 94 (398)
T ss_dssp ETTEES-HHHHHHHHHHH-HHHHTT---------TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC-
T ss_pred cccccChHHHHHHHHHHH-HHHhccc-------ccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecccC
Confidence 467899999888765433 3333222 2358999999999999999999999997 7888888887743
Q ss_pred -hHHHHHHHHhc
Q 009640 267 -NSELRALLLQT 277 (530)
Q Consensus 267 -~~~L~~l~~~~ 277 (530)
...|.+.|.++
T Consensus 95 KTE~L~qa~Rra 106 (398)
T PF06068_consen 95 KTEALTQAFRRA 106 (398)
T ss_dssp HHHHHHHHHHCS
T ss_pred chHHHHHHHHHh
Confidence 23366666653
No 254
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.85 E-value=4.6e-05 Score=73.02 Aligned_cols=33 Identities=12% Similarity=0.074 Sum_probs=24.6
Q ss_pred CCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCC
Q 009640 360 SEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTC 394 (530)
Q Consensus 360 ~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p 394 (530)
..+.-||++|-++..||+.+++ .++.++++..+
T Consensus 114 h~g~diiliTQ~~~~id~~ir~--lve~~~~~~k~ 146 (193)
T PF05707_consen 114 HYGWDIILITQSPSQIDKFIRD--LVEYHYHCRKL 146 (193)
T ss_dssp CTT-EEEEEES-GGGB-HHHHC--CEEEEEEEEE-
T ss_pred cCCcEEEEEeCCHHHHhHHHHH--HHheEEEEEee
Confidence 3557799999999999998887 99999988644
No 255
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.83 E-value=0.00013 Score=85.86 Aligned_cols=125 Identities=21% Similarity=0.343 Sum_probs=85.7
Q ss_pred CceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccCChHHHHHHHH--------------------hcCCCeEEEEcC
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVTDNSELRALLL--------------------QTTNRSIIVIED 287 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~~~~~L~~l~~--------------------~~~~~sII~IDe 287 (530)
.+++||-|.||.|||+|+.|+|+..|-.++.+++++- ++|..+|- .+....-|++||
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQ---TdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVlLDE 1619 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQ---TDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVLLDE 1619 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeecccc---chHHHHhCCCCCcccCceeEecccHHHHHhhcCCEEEeeh
Confidence 4689999999999999999999999999999999874 33444432 234567888999
Q ss_pred ccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccC-----------Cc
Q 009640 288 IDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDG-----------LW 356 (530)
Q Consensus 288 ID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg-----------l~ 356 (530)
+.-. ++.++.||-.++|. ..
T Consensus 1620 iNLa-------------------------------------------------SQSVlEGLNacLDhR~eayIPEld~~f 1650 (4600)
T COG5271 1620 INLA-------------------------------------------------SQSVLEGLNACLDHRREAYIPELDKTF 1650 (4600)
T ss_pred hhhh-------------------------------------------------HHHHHHHHHHHHhhcccccccccccee
Confidence 8754 23355555555552 22
Q ss_pred cCCCCCeEEEEEeCCCC------CCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhC
Q 009640 357 SCCSEEKIIVFTTNHRD------SVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLG 408 (530)
Q Consensus 357 s~~~~~~ivI~TTN~~~------~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~ 408 (530)
+ |..+..|.+|-|.-+ -||..++. ||.+ |.|...+......|+..++.
T Consensus 1651 ~-~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RFsv-V~~d~lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1651 D-VHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RFSV-VKMDGLTTDDITHIANKMYP 1704 (4600)
T ss_pred e-ccCCeeeeeecCchhcCCCcccCCHHHhh--hhhe-EEecccccchHHHHHHhhCC
Confidence 2 334444555555433 58999998 8865 67776666666666655544
No 256
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.82 E-value=5.7e-05 Score=75.70 Aligned_cols=92 Identities=15% Similarity=0.144 Sum_probs=62.2
Q ss_pred ccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEec-------CccCC
Q 009640 194 ETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLEL-------TKVTD 266 (530)
Q Consensus 194 ~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l-------~~~~~ 266 (530)
..|.|+.-+++.|...+..|+.++..- .|--+-|||+|||||+..++-||+.+-.....-+. ...-.
T Consensus 82 ~~lfGQHla~~~Vv~alk~~~~n~~p~------KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~ 155 (344)
T KOG2170|consen 82 RALFGQHLAKQLVVNALKSHWANPNPR------KPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPH 155 (344)
T ss_pred HHhhchHHHHHHHHHHHHHHhcCCCCC------CCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCC
Confidence 346889999999999999999876410 12234579999999999999999987322221110 00111
Q ss_pred -------hHHHHHHHHh---cCCCeEEEEcCccch
Q 009640 267 -------NSELRALLLQ---TTNRSIIVIEDIDCS 291 (530)
Q Consensus 267 -------~~~L~~l~~~---~~~~sII~IDeID~~ 291 (530)
..+|+..+.. ..++||.++||+|.+
T Consensus 156 ~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 156 ASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhc
Confidence 1234444443 368899999999987
No 257
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.80 E-value=0.00062 Score=73.22 Aligned_cols=62 Identities=18% Similarity=0.252 Sum_probs=47.3
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecCccCChHHHHHHHHh------------------cCCCeEEEEcC
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELTKVTDNSELRALLLQ------------------TTNRSIIVIED 287 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~~~~~~~~L~~l~~~------------------~~~~sII~IDe 287 (530)
..++++|.+||||+++++++.... +.+++.+++..... ..+...+.. ...+.+|||||
T Consensus 163 ~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~lde 241 (441)
T PRK10365 163 ATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNE-SLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 (441)
T ss_pred CeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCH-HHHHHHhcCCCCCCcCCCCcCCCCceeECCCCEEEEec
Confidence 579999999999999999998765 46899999887643 344443321 12467899999
Q ss_pred ccch
Q 009640 288 IDCS 291 (530)
Q Consensus 288 ID~~ 291 (530)
||.+
T Consensus 242 i~~l 245 (441)
T PRK10365 242 IGDI 245 (441)
T ss_pred cccC
Confidence 9997
No 258
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.80 E-value=1.8e-05 Score=69.29 Aligned_cols=30 Identities=40% Similarity=0.770 Sum_probs=27.2
Q ss_pred EEEECCCCCChhHHHHHHHHHcCCcEEEEe
Q 009640 231 YLLYGPPGSGKSSLIAAMANYLCYDVYDLE 260 (530)
Q Consensus 231 ~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~ 260 (530)
|++.||||+||||+++.+|..+++.+++++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d 31 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMD 31 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEec
Confidence 689999999999999999999998877664
No 259
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=97.80 E-value=0.00011 Score=79.01 Aligned_cols=93 Identities=17% Similarity=0.255 Sum_probs=67.9
Q ss_pred CCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecCc
Q 009640 187 FRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELTK 263 (530)
Q Consensus 187 ~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~~ 263 (530)
...+.+|++|++....-.++++....+... ...+|+.|.+||||..+|++|-+.. +-+|+.+++..
T Consensus 238 ~~a~y~f~~Iig~S~~m~~~~~~akr~A~t-----------dstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaA 306 (560)
T COG3829 238 LKAKYTFDDIIGESPAMLRVLELAKRIAKT-----------DSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAA 306 (560)
T ss_pred cccccchhhhccCCHHHHHHHHHHHhhcCC-----------CCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEeccc
Confidence 346678999999888777777766655544 3589999999999999999998876 67999999987
Q ss_pred cCChHHHH-HHH-------Hhc-----------CCCeEEEEcCccch
Q 009640 264 VTDNSELR-ALL-------LQT-----------TNRSIIVIEDIDCS 291 (530)
Q Consensus 264 ~~~~~~L~-~l~-------~~~-----------~~~sII~IDeID~~ 291 (530)
+-. .-|. .|| ..+ ....-||+|||-.+
T Consensus 307 iPe-~LlESELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgem 352 (560)
T COG3829 307 IPE-TLLESELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEM 352 (560)
T ss_pred CCH-HHHHHHHhCcCCccccccccCCCCcceeeccCCeEEehhhccC
Confidence 732 1222 222 111 23357999999876
No 260
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.74 E-value=1.4e-05 Score=83.12 Aligned_cols=129 Identities=22% Similarity=0.275 Sum_probs=71.5
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCc----c-----CCh--H--HHHH-HHHhcCCCeEEEEcCccchhhh
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTK----V-----TDN--S--ELRA-LLLQTTNRSIIVIEDIDCSVDL 294 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~----~-----~~~--~--~L~~-l~~~~~~~sII~IDeID~~~~~ 294 (530)
-.+||.|.||||||.|.+.+++.....+|..--+. + .+. . -+.. .+. .....|++|||+|.+-+
T Consensus 58 ihiLlvGdpg~gKS~ll~~~~~~~pr~v~~~g~~~s~~gLta~~~~d~~~~~~~leaGalv-lad~GiccIDe~dk~~~- 135 (331)
T PF00493_consen 58 IHILLVGDPGTGKSQLLKYVAKLAPRSVYTSGKGSSAAGLTASVSRDPVTGEWVLEAGALV-LADGGICCIDEFDKMKE- 135 (331)
T ss_dssp --EEEECSCHHCHHHHHHCCCCT-SSEEEEECCGSTCCCCCEEECCCGGTSSECEEE-HHH-HCTTSEEEECTTTT--C-
T ss_pred cceeeccchhhhHHHHHHHHHhhCCceEEECCCCcccCCccceeccccccceeEEeCCchh-cccCceeeecccccccc-
Confidence 36999999999999999999887766666542111 0 110 0 0110 111 24679999999998711
Q ss_pred hhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccC---------CccCCCCCeEE
Q 009640 295 TADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDG---------LWSCCSEEKII 365 (530)
Q Consensus 295 ~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg---------l~s~~~~~~iv 365 (530)
.....|+..|+. +...-.-+.-|
T Consensus 136 ------------------------------------------------~~~~~l~eaMEqq~isi~kagi~~~l~ar~sv 167 (331)
T PF00493_consen 136 ------------------------------------------------DDRDALHEAMEQQTISIAKAGIVTTLNARCSV 167 (331)
T ss_dssp ------------------------------------------------HHHHHHHHHHHCSCEEECTSSSEEEEE---EE
T ss_pred ------------------------------------------------hHHHHHHHHHHcCeeccchhhhcccccchhhh
Confidence 012233333321 11111233468
Q ss_pred EEEeCCCC-------------CCChhhhcCCceeEEEEe-CCCCHHHHHHHHHHhhCC
Q 009640 366 VFTTNHRD-------------SVDPALIRCGRMDVHVSL-GTCGPHAFKVLAKNYLGI 409 (530)
Q Consensus 366 I~TTN~~~-------------~LDpALlRpGR~d~~I~~-~~p~~~~r~~i~~~~l~~ 409 (530)
++++|... .++++|+. |||..+.+ ..|+.+.=..|.++.+..
T Consensus 168 laa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~ 223 (331)
T PF00493_consen 168 LAAANPKFGRYDPNKSLSENINLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDS 223 (331)
T ss_dssp EEEE--TT--S-TTS-CGCCT-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTT
T ss_pred HHHHhhhhhhcchhhhhHHhcccchhhHh--hcCEEEEeccccccccccccceEEEec
Confidence 88999876 48889999 99988765 677877777777777654
No 261
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.73 E-value=4.5e-05 Score=83.20 Aligned_cols=66 Identities=29% Similarity=0.337 Sum_probs=50.4
Q ss_pred CCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc-CCcEEEEec
Q 009640 189 HPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL-CYDVYDLEL 261 (530)
Q Consensus 189 ~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l-~~~i~~l~l 261 (530)
+-.-|+++.|.+++++.|++.+..-...-. ..++-++|.||||+|||+|+++||+.+ .+++|.+..
T Consensus 71 ry~fF~d~yGlee~ieriv~~l~~Aa~gl~-------~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 71 RYPAFEEFYGMEEAIEQIVSYFRHAAQGLE-------EKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred cccchhcccCcHHHHHHHHHHHHHHHHhcC-------CCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 344589999999999999987754433211 124578899999999999999999988 567887754
No 262
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=97.72 E-value=8.4e-05 Score=80.77 Aligned_cols=163 Identities=17% Similarity=0.290 Sum_probs=98.5
Q ss_pred cccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCC--ceEEEECCCCCChhHHHHHHHHHcCCcEEEEec-Ccc-----
Q 009640 193 FETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWK--RGYLLYGPPGSGKSSLIAAMANYLCYDVYDLEL-TKV----- 264 (530)
Q Consensus 193 f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~--rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l-~~~----- 264 (530)
|-.|.|.+.+|..|.-.+ +.+-..+..-|.+.+ -.+++.|.||||||-+.++.++.+-..+|..-- ++-
T Consensus 344 ~PsIyGhe~VK~GilL~L---fGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTa 420 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILLSL---FGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTA 420 (764)
T ss_pred CccccchHHHHhhHHHHH---hCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccceE
Confidence 566788888888775432 222222222233332 249999999999999999999999888886521 111
Q ss_pred --CChHHHHHHHHhc-----CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCC
Q 009640 265 --TDNSELRALLLQT-----TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNG 337 (530)
Q Consensus 265 --~~~~~L~~l~~~~-----~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 337 (530)
..+++--....++ ....|..|||+|.+= ...
T Consensus 421 aVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd-~~d----------------------------------------- 458 (764)
T KOG0480|consen 421 AVVKDEESGDFTIEAGALMLADNGICCIDEFDKMD-VKD----------------------------------------- 458 (764)
T ss_pred EEEecCCCCceeeecCcEEEccCceEEechhcccC-hHh-----------------------------------------
Confidence 0111111111122 467899999999871 100
Q ss_pred CcchhhhHHHHhhhcc---------CCccCCCCCeEEEEEeCCCC-------------CCChhhhcCCcee-EEEEeCCC
Q 009640 338 EESGRVTLSGLLNFTD---------GLWSCCSEEKIIVFTTNHRD-------------SVDPALIRCGRMD-VHVSLGTC 394 (530)
Q Consensus 338 ~~~~~~~ls~LLn~lD---------gl~s~~~~~~ivI~TTN~~~-------------~LDpALlRpGR~d-~~I~~~~p 394 (530)
+ ..++..|+ |+...-+.+--||+++|... .+++++++ ||| ..|.+..|
T Consensus 459 ----q---vAihEAMEQQtISIaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~ 529 (764)
T KOG0480|consen 459 ----Q---VAIHEAMEQQTISIAKAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDC 529 (764)
T ss_pred ----H---HHHHHHHHhheehheecceEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCC
Confidence 0 01111111 11111122334777887653 47899999 999 56778999
Q ss_pred CHHHHHHHHHHhhCC
Q 009640 395 GPHAFKVLAKNYLGI 409 (530)
Q Consensus 395 ~~~~r~~i~~~~l~~ 409 (530)
++..=..|.++.+..
T Consensus 530 nE~~D~~ia~hIld~ 544 (764)
T KOG0480|consen 530 NEVVDYAIARHILDL 544 (764)
T ss_pred chHHHHHHHHHHHHH
Confidence 998888888877754
No 263
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=97.71 E-value=0.0011 Score=71.26 Aligned_cols=89 Identities=16% Similarity=0.155 Sum_probs=66.1
Q ss_pred CcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecCccCChH
Q 009640 192 TFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELTKVTDNS 268 (530)
Q Consensus 192 ~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~~~~~~~ 268 (530)
.+..++|....-+++.+.+.....+. ..+|++|.+||||-.+|++|-... +-+|+.+++..+..+-
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA~s~-----------a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVAPSD-----------ASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHHhCCC-----------CCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence 35677888887788888777665543 589999999999999999998877 4599999998874332
Q ss_pred HHHHHHHh-----------------cCCCeEEEEcCccch
Q 009640 269 ELRALLLQ-----------------TTNRSIIVIEDIDCS 291 (530)
Q Consensus 269 ~L~~l~~~-----------------~~~~sII~IDeID~~ 291 (530)
-=..+|-. ......||||||..+
T Consensus 208 ~ESELFGhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~m 247 (464)
T COG2204 208 LESELFGHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEM 247 (464)
T ss_pred HHHHhhcccccCcCCcccccCcceeEcCCceEEeeccccC
Confidence 22234431 124578999999876
No 264
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.70 E-value=0.00026 Score=66.71 Aligned_cols=30 Identities=23% Similarity=0.225 Sum_probs=23.3
Q ss_pred EEEECCCCCChhHHHHHHHHHc---CCcEEEEe
Q 009640 231 YLLYGPPGSGKSSLIAAMANYL---CYDVYDLE 260 (530)
Q Consensus 231 ~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~ 260 (530)
+|++||||||||+|+..++... |..+..++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 6899999999999998887654 45555444
No 265
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.70 E-value=0.00015 Score=70.03 Aligned_cols=40 Identities=28% Similarity=0.390 Sum_probs=31.9
Q ss_pred cCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecCc
Q 009640 224 GRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELTK 263 (530)
Q Consensus 224 g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~~ 263 (530)
|+|...-++++||||||||+++..+|... +..+..++...
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 67777789999999999999999888654 55677776654
No 266
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.68 E-value=4.1e-05 Score=71.12 Aligned_cols=35 Identities=31% Similarity=0.386 Sum_probs=31.1
Q ss_pred CCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEe
Q 009640 226 AWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLE 260 (530)
Q Consensus 226 ~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~ 260 (530)
+.+..++|+||||||||++++++|..+++.+++.+
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 34568999999999999999999999999998753
No 267
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.68 E-value=0.00012 Score=76.93 Aligned_cols=63 Identities=25% Similarity=0.372 Sum_probs=42.3
Q ss_pred CceEEEECCCCCChhHHHHHHHHHc----C-CcEEEEecCcc----------------------CChHHHHHHHHhcCCC
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYL----C-YDVYDLELTKV----------------------TDNSELRALLLQTTNR 280 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l----~-~~i~~l~l~~~----------------------~~~~~L~~l~~~~~~~ 280 (530)
..-++|.||+|+||||++..||..+ + ..+..+..... .+..++...+.+....
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 3568999999999999999999864 2 23433332221 2233455566666777
Q ss_pred eEEEEcCccc
Q 009640 281 SIIVIEDIDC 290 (530)
Q Consensus 281 sII~IDeID~ 290 (530)
.+|+||....
T Consensus 217 DlVLIDTaG~ 226 (374)
T PRK14722 217 HMVLIDTIGM 226 (374)
T ss_pred CEEEEcCCCC
Confidence 8888888764
No 268
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.67 E-value=7.5e-05 Score=66.16 Aligned_cols=53 Identities=13% Similarity=0.049 Sum_probs=42.7
Q ss_pred ccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc
Q 009640 194 ETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 194 ~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l 252 (530)
..|.|++-+++.|.+.+..++.++.. ..|--+.||||||||||.+++-||+.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p------~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNP------RKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCC------CCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 45789999999999999999977531 112245589999999999999999986
No 269
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.63 E-value=0.00051 Score=66.02 Aligned_cols=63 Identities=24% Similarity=0.470 Sum_probs=39.4
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecCccCCh----------HHHHHHHHh-----------cCCCeEEE
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELTKVTDN----------SELRALLLQ-----------TTNRSIIV 284 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~~~~~~----------~~L~~l~~~-----------~~~~sII~ 284 (530)
+-.++.||||||||+++++++..+ +..++-+..+.-... ..+..++.. ..+..+||
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vli 98 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLI 98 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEE
Confidence 567889999999999999988766 667777765542111 112222221 12347999
Q ss_pred EcCccch
Q 009640 285 IEDIDCS 291 (530)
Q Consensus 285 IDeID~~ 291 (530)
|||+-.+
T Consensus 99 VDEasmv 105 (196)
T PF13604_consen 99 VDEASMV 105 (196)
T ss_dssp ESSGGG-
T ss_pred Eeccccc
Confidence 9999876
No 270
>PF08740 BCS1_N: BCS1 N terminal; InterPro: IPR014851 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. This domain is found at the N terminus of the mitochondrial BSC1 subfamily, belonging to the AAA ATPase family. At2g21640 and BCS1 are both highly stress responsive genes which encode mitochondrial proteins. The promoter of BCS1 was not responsive to H2O2 or rotenone, but highly responsive to salicylic acid (SA). The SA dependent pathway represented by BCS1 is one of at least three distinctive pathways to regulate mitochondrial stress response at a transcriptional level []. The BCS1 product is a mitochondrial protein required for the assembly of respiratory complex III []. BCS1, a component of the inner membrane of mitochondria, belongs to the group of proteins with internal, noncleavable import signals. It has a transmembrane domain (amino acid residues 51 to 68), a presequence type helix (residues 69 to 83), and an import auxiliary region (residues 84 to 126) [].
Probab=97.62 E-value=0.002 Score=61.28 Aligned_cols=129 Identities=16% Similarity=0.253 Sum_probs=89.1
Q ss_pred cChHHHHHHHHhhccCCCCCccccceeecccC----------------------CCCceEEEeCCCCeEeecccCeEEEE
Q 009640 59 VNDLYRHVNLYLNSVNPAGSSTCRRLTLSRSR----------------------SSNRISFTVAPNHTVHDSFSGHSLSW 116 (530)
Q Consensus 59 ~n~~~~a~~~yl~~~~~~~~~~~~~l~~~~~~----------------------~~~~~~~~~~~~~~~~d~f~g~~~~w 116 (530)
..++|+.+-.||+....... .+++.+.... +...+.+.+.+| ...+.|+|..++.
T Consensus 34 ~D~~Y~~lm~Wls~q~~~~~--~r~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~G-~h~F~y~G~~~~~ 110 (187)
T PF08740_consen 34 DDEAYDWLMRWLSSQPFSKR--SRHLSATTRSNSSWDDDESDDEDSWDTNTSDDKKKPIRFTPSPG-THWFWYKGRWFWF 110 (187)
T ss_pred CCHHHHHHHHHHhhCCcccc--cceeEEEeecccccccccccccchhccccccCCcCCeEEEeCCC-CEEEEECCEEEEE
Confidence 47899999999998743331 1555554311 355677888888 8899999999999
Q ss_pred EEEeecccccc---cccceEEEecccchhhhhHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCCCccccCCCCCCCc
Q 009640 117 THHVDTVQDSV---EEKRSFTLKLPKRHRQTLLSAYLDHVTSRAEEFERVSRERRLFTNNGHGSYDSGWVSVPFRHPSTF 193 (530)
Q Consensus 117 ~~~~~~~~~~~---~~~~~~~l~~~~~~~~~vl~~yl~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~f 193 (530)
.+......... .....++|++-.+++ .+|+.+|.++.+. ..+.......+|...+.+ ..|..+...+++++
T Consensus 111 ~R~~~~~~~~~~~~~~~e~l~l~~lg~s~-~~l~~ll~ear~~--~~~~~~~~t~Iy~~~~~~---~~W~~~~~r~~Rpl 184 (187)
T PF08740_consen 111 SRQRESNSYNSWTGAPDETLTLSCLGRSP-KPLKDLLEEAREY--YLKKQKGKTTIYRADGSE---YRWRRVASRPKRPL 184 (187)
T ss_pred EEEeccccccccCCCCceEEEEEEecCCH-HHHHHHHHHHHHH--HHHhcCCcEEEEeCCCCC---CCCcCCCCcCCCCC
Confidence 88773322111 125678888888776 5788888876664 334445556677774332 26999988999998
Q ss_pred ccc
Q 009640 194 ETL 196 (530)
Q Consensus 194 ~~l 196 (530)
++|
T Consensus 185 sTV 187 (187)
T PF08740_consen 185 STV 187 (187)
T ss_pred CCC
Confidence 875
No 271
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.60 E-value=0.00053 Score=63.03 Aligned_cols=24 Identities=33% Similarity=0.616 Sum_probs=22.1
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l 252 (530)
--+.+.||||+|||+++.-+|+.|
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 468899999999999999999888
No 272
>PRK07261 topology modulation protein; Provisional
Probab=97.60 E-value=0.00025 Score=66.61 Aligned_cols=30 Identities=30% Similarity=0.429 Sum_probs=26.9
Q ss_pred EEEECCCCCChhHHHHHHHHHcCCcEEEEe
Q 009640 231 YLLYGPPGSGKSSLIAAMANYLCYDVYDLE 260 (530)
Q Consensus 231 ~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~ 260 (530)
+++.|+||+|||||++.|+..++.+++.++
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D 32 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLD 32 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEecC
Confidence 789999999999999999999988877654
No 273
>PRK08118 topology modulation protein; Reviewed
Probab=97.57 E-value=0.00013 Score=68.42 Aligned_cols=57 Identities=23% Similarity=0.257 Sum_probs=39.9
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCcEEEEecCc------cCChHHHHHHHHhc-CCCeEEEEcC
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTK------VTDNSELRALLLQT-TNRSIIVIED 287 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~------~~~~~~L~~l~~~~-~~~sII~IDe 287 (530)
-+++.||||+|||||++.|++.++.++++++.-- ..+..+...++... ..++. |||-
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~w~~~~~~~~~~~~~~~~~~~~w-VidG 66 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPNWEGVPKEEQITVQNELVKEDEW-IIDG 66 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcCCCHHHHHHHHHHHhcCCCE-EEeC
Confidence 5899999999999999999999999998887321 12333455554443 34554 4443
No 274
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.50 E-value=8.8e-05 Score=72.46 Aligned_cols=22 Identities=45% Similarity=0.878 Sum_probs=20.0
Q ss_pred ceEEEECCCCCChhHHHHHHHH
Q 009640 229 RGYLLYGPPGSGKSSLIAAMAN 250 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~ 250 (530)
.-+|+||+|||||||+|+.+++
T Consensus 13 ~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 13 NMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred cEEEEECCCCCCHHHHHHhcCC
Confidence 4599999999999999999984
No 275
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.49 E-value=0.00069 Score=71.78 Aligned_cols=62 Identities=15% Similarity=0.266 Sum_probs=39.9
Q ss_pred ceEEEECCCCCChhHHHHHHHHH-cCCcEEEEecCccCChHHHHHHHHhcCCCeEEEEcCccch
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANY-LCYDVYDLELTKVTDNSELRALLLQTTNRSIIVIEDIDCS 291 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~-l~~~i~~l~l~~~~~~~~L~~l~~~~~~~sII~IDeID~~ 291 (530)
.++++.||||||||+++.+++.+ ............+..+-. .+.+.......+|+|||+--+
T Consensus 210 ~Nli~lGp~GTGKThla~~l~~~~a~~sG~f~T~a~Lf~~L~-~~~lg~v~~~DlLI~DEvgyl 272 (449)
T TIGR02688 210 YNLIELGPKGTGKSYIYNNLSPYVILISGGTITVAKLFYNIS-TRQIGLVGRWDVVAFDEVATL 272 (449)
T ss_pred CcEEEECCCCCCHHHHHHHHhHHHHHHcCCcCcHHHHHHHHH-HHHHhhhccCCEEEEEcCCCC
Confidence 48999999999999999999888 322221111111111111 133444567899999999875
No 276
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.44 E-value=0.00017 Score=80.70 Aligned_cols=94 Identities=23% Similarity=0.302 Sum_probs=56.6
Q ss_pred ccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCc---eEEEECCCCCChhHHHHHHHHHcCCcEEEEecC-cc-----
Q 009640 194 ETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKR---GYLLYGPPGSGKSSLIAAMANYLCYDVYDLELT-KV----- 264 (530)
Q Consensus 194 ~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~r---G~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~-~~----- 264 (530)
-.|.|.+.+|+.|.-.+ |-..+....+ | .|-| ++||.|-||||||.|.+.+++.+-..+|.---+ +.
T Consensus 286 PsIyG~e~VKkAilLqL--fgGv~k~~~~-g-~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTA 361 (682)
T COG1241 286 PSIYGHEDVKKAILLQL--FGGVKKNLPD-G-TRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTA 361 (682)
T ss_pred ccccCcHHHHHHHHHHh--cCCCcccCCC-C-cccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCcee
Confidence 45778888888775433 2221111110 1 1223 489999999999999999999998777754211 11
Q ss_pred -C-ChHHHHHHHHhc-----CCCeEEEEcCccch
Q 009640 265 -T-DNSELRALLLQT-----TNRSIIVIEDIDCS 291 (530)
Q Consensus 265 -~-~~~~L~~l~~~~-----~~~sII~IDeID~~ 291 (530)
. .+...-++..++ ..+.|++|||+|.+
T Consensus 362 av~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm 395 (682)
T COG1241 362 AVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKM 395 (682)
T ss_pred EEEEccCCCeEEEeCCEEEEecCCEEEEEeccCC
Confidence 0 011011122222 57899999999986
No 277
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.43 E-value=0.0017 Score=68.80 Aligned_cols=26 Identities=42% Similarity=0.686 Sum_probs=23.0
Q ss_pred CCceEEEECCCCCChhHHHHHHHHHc
Q 009640 227 WKRGYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 227 ~~rG~LL~GPPGTGKTsLa~AiA~~l 252 (530)
+++-++|+||+|+||||+++-+|..+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999999876
No 278
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.42 E-value=0.00077 Score=66.37 Aligned_cols=38 Identities=26% Similarity=0.293 Sum_probs=30.1
Q ss_pred cCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEec
Q 009640 224 GRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLEL 261 (530)
Q Consensus 224 g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l 261 (530)
|+|...-++++||||||||+|+.+++... +..++.++.
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~ 61 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITT 61 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEc
Confidence 67778889999999999999999997653 556655543
No 279
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=97.42 E-value=0.0064 Score=59.86 Aligned_cols=125 Identities=12% Similarity=0.094 Sum_probs=92.2
Q ss_pred ceEEEECCCC-CChhHHHHHHHHHcC---------CcEEEEecCc-------cCChHHHHHHHHhc------CCCeEEEE
Q 009640 229 RGYLLYGPPG-SGKSSLIAAMANYLC---------YDVYDLELTK-------VTDNSELRALLLQT------TNRSIIVI 285 (530)
Q Consensus 229 rG~LL~GPPG-TGKTsLa~AiA~~l~---------~~i~~l~l~~-------~~~~~~L~~l~~~~------~~~sII~I 285 (530)
..|||.|..+ +||.-++.-++..+. -|++.+.... ..+-..+|++.... ...-|++|
T Consensus 16 hAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KViII 95 (263)
T PRK06581 16 NSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVAII 95 (263)
T ss_pred heeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEEEE
Confidence 5899999998 999999888777662 3566664331 23445666665433 24569999
Q ss_pred cCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEE
Q 009640 286 EDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKII 365 (530)
Q Consensus 286 DeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~iv 365 (530)
+++|.+- ....+.||..++.- ....++
T Consensus 96 ~~ae~mt-------------------------------------------------~~AANALLKtLEEP----P~~t~f 122 (263)
T PRK06581 96 YSAELMN-------------------------------------------------LNAANSCLKILEDA----PKNSYI 122 (263)
T ss_pred echHHhC-------------------------------------------------HHHHHHHHHhhcCC----CCCeEE
Confidence 9999872 23467899999853 467888
Q ss_pred EEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCC
Q 009640 366 VFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGI 409 (530)
Q Consensus 366 I~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~ 409 (530)
|++|..++.|.|.+++ |+ .++.|..|....-.+++..++..
T Consensus 123 ILit~~~~~LLpTIrS--RC-q~i~~~~p~~~~~~e~~~~~~~p 163 (263)
T PRK06581 123 FLITSRAASIISTIRS--RC-FKINVRSSILHAYNELYSQFIQP 163 (263)
T ss_pred EEEeCChhhCchhHhh--ce-EEEeCCCCCHHHHHHHHHHhccc
Confidence 9999999999999998 76 56889999988877777666654
No 280
>PRK13947 shikimate kinase; Provisional
Probab=97.41 E-value=0.00014 Score=67.67 Aligned_cols=31 Identities=26% Similarity=0.429 Sum_probs=29.2
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCcEEEEe
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCYDVYDLE 260 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~ 260 (530)
.++|.|+||||||++++.+|+.+++++++.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 5899999999999999999999999999875
No 281
>PRK03839 putative kinase; Provisional
Probab=97.40 E-value=0.00013 Score=68.78 Aligned_cols=30 Identities=33% Similarity=0.589 Sum_probs=27.8
Q ss_pred EEEECCCCCChhHHHHHHHHHcCCcEEEEe
Q 009640 231 YLLYGPPGSGKSSLIAAMANYLCYDVYDLE 260 (530)
Q Consensus 231 ~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~ 260 (530)
++|.|+||+||||+++.+|+.+++++++++
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 789999999999999999999999988763
No 282
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.40 E-value=0.00033 Score=70.54 Aligned_cols=92 Identities=25% Similarity=0.417 Sum_probs=58.7
Q ss_pred CCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCC---cEEEEec-Cc
Q 009640 188 RHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCY---DVYDLEL-TK 263 (530)
Q Consensus 188 ~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~---~i~~l~l-~~ 263 (530)
..+.+++++...+...+.+.+.+...+.. ...+|+.||+|+||||++.++..++.. .++.++- .+
T Consensus 98 ~~~~sle~l~~~~~~~~~~~~~l~~~v~~-----------~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E 166 (270)
T PF00437_consen 98 SKPFSLEDLGESGSIPEEIAEFLRSAVRG-----------RGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPE 166 (270)
T ss_dssp SS--CHCCCCHTHHCHHHHHHHHHHCHHT-----------TEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-
T ss_pred cccccHhhccCchhhHHHHHHHHhhcccc-----------ceEEEEECCCccccchHHHHHhhhccccccceEEeccccc
Confidence 35557888877776666666555443322 357999999999999999999998843 4444431 11
Q ss_pred c-------------CChHHHHHHHHhc--CCCeEEEEcCccc
Q 009640 264 V-------------TDNSELRALLLQT--TNRSIIVIEDIDC 290 (530)
Q Consensus 264 ~-------------~~~~~L~~l~~~~--~~~sII~IDeID~ 290 (530)
+ .....+.+++..+ ..|.+|+|.||-.
T Consensus 167 ~~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~ 208 (270)
T PF00437_consen 167 LRLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRD 208 (270)
T ss_dssp S--SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-S
T ss_pred eeecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccCC
Confidence 1 1233466666655 6899999999974
No 283
>PF14516 AAA_35: AAA-like domain
Probab=97.40 E-value=0.0089 Score=62.21 Aligned_cols=36 Identities=22% Similarity=0.335 Sum_probs=29.0
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecCcc
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELTKV 264 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~~~ 264 (530)
.-+.++||..+|||||..++.+.+ ++..+.+++..+
T Consensus 32 ~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~ 70 (331)
T PF14516_consen 32 SYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQL 70 (331)
T ss_pred CEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecC
Confidence 457889999999999999988766 777777776554
No 284
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.40 E-value=0.00015 Score=66.09 Aligned_cols=31 Identities=29% Similarity=0.411 Sum_probs=28.5
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCcEEEEe
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCYDVYDLE 260 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~ 260 (530)
.++|+||||+|||++++++|..+++.+++.+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 3789999999999999999999999998765
No 285
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.37 E-value=0.00096 Score=67.18 Aligned_cols=85 Identities=22% Similarity=0.361 Sum_probs=52.3
Q ss_pred CCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCce-EEEECCCCCChhHHHHHHHHHcC---CcEEEEe------
Q 009640 191 STFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRG-YLLYGPPGSGKSSLIAAMANYLC---YDVYDLE------ 260 (530)
Q Consensus 191 ~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG-~LL~GPPGTGKTsLa~AiA~~l~---~~i~~l~------ 260 (530)
.++++++..++..+.+.+.+ .. ++| +++.||+|+||||+++++..++. ..++.++
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~----~~-----------~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~ 121 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLL----EK-----------PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQ 121 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHH----hc-----------CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceec
Confidence 45788887777655543322 21 234 78999999999999999988774 3344442
Q ss_pred cCcc-----CC--hHHHHHHHHhc--CCCeEEEEcCccc
Q 009640 261 LTKV-----TD--NSELRALLLQT--TNRSIIVIEDIDC 290 (530)
Q Consensus 261 l~~~-----~~--~~~L~~l~~~~--~~~sII~IDeID~ 290 (530)
+..+ .. ...+..++..+ ..|.+|+|.||-.
T Consensus 122 ~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~ 160 (264)
T cd01129 122 IPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIRD 160 (264)
T ss_pred CCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCCC
Confidence 1111 00 11233444433 5799999999953
No 286
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.36 E-value=0.00093 Score=65.90 Aligned_cols=37 Identities=27% Similarity=0.239 Sum_probs=26.6
Q ss_pred cCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEe
Q 009640 224 GRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLE 260 (530)
Q Consensus 224 g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~ 260 (530)
|++...-+++.||||||||+++..++..+ +..+..+.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 46666779999999999999976555433 44555444
No 287
>PRK00625 shikimate kinase; Provisional
Probab=97.34 E-value=0.00018 Score=67.86 Aligned_cols=31 Identities=32% Similarity=0.564 Sum_probs=29.1
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCcEEEEe
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCYDVYDLE 260 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~ 260 (530)
.++|.|+||+|||++++.+|+.+++++++++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 4789999999999999999999999999975
No 288
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.33 E-value=0.00094 Score=64.88 Aligned_cols=38 Identities=26% Similarity=0.401 Sum_probs=29.8
Q ss_pred cCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEec
Q 009640 224 GRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLEL 261 (530)
Q Consensus 224 g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l 261 (530)
|++..+-++++||||||||+++..+|.++ +..+..++.
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~ 55 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDT 55 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 56666669999999999999999998765 456655643
No 289
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.33 E-value=0.00017 Score=64.87 Aligned_cols=26 Identities=50% Similarity=0.723 Sum_probs=23.1
Q ss_pred EEEECCCCCChhHHHHHHHHHcCCcE
Q 009640 231 YLLYGPPGSGKSSLIAAMANYLCYDV 256 (530)
Q Consensus 231 ~LL~GPPGTGKTsLa~AiA~~l~~~i 256 (530)
+++.||||+||||+++.++..++..+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~ 27 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVV 27 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEE
Confidence 68999999999999999999998333
No 290
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.32 E-value=0.00019 Score=64.97 Aligned_cols=33 Identities=27% Similarity=0.518 Sum_probs=29.8
Q ss_pred CceEEEECCCCCChhHHHHHHHHHcCCcEEEEe
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLE 260 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~ 260 (530)
...+|+.|-||||||+++.++|..+++..+.++
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 457999999999999999999999999988763
No 291
>PRK13949 shikimate kinase; Provisional
Probab=97.31 E-value=0.0002 Score=67.15 Aligned_cols=32 Identities=34% Similarity=0.436 Sum_probs=29.5
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCCcEEEEe
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCYDVYDLE 260 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~ 260 (530)
+.++|.||||+|||++++.+|+.+++++++++
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 36899999999999999999999999999875
No 292
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.31 E-value=0.00076 Score=65.72 Aligned_cols=63 Identities=24% Similarity=0.309 Sum_probs=39.9
Q ss_pred ceEEEECCCCCChhHHHHHHHH-----HcCCcE---------EEEecCccCC-----------hHH---HHHHHHhcCCC
Q 009640 229 RGYLLYGPPGSGKSSLIAAMAN-----YLCYDV---------YDLELTKVTD-----------NSE---LRALLLQTTNR 280 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~-----~l~~~i---------~~l~l~~~~~-----------~~~---L~~l~~~~~~~ 280 (530)
+.++|.||.|+|||++.+.++. ..|..+ ++-..+.+.. ..+ +..++..+..+
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~~~~~~ 109 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALRLATRR 109 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHHHHHHHHHHHHhCCCC
Confidence 6799999999999999999983 233222 1111111111 122 33334456889
Q ss_pred eEEEEcCccch
Q 009640 281 SIIVIEDIDCS 291 (530)
Q Consensus 281 sII~IDeID~~ 291 (530)
++++|||+..-
T Consensus 110 slvllDE~~~g 120 (213)
T cd03281 110 SLVLIDEFGKG 120 (213)
T ss_pred cEEEeccccCC
Confidence 99999999864
No 293
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=97.30 E-value=0.00079 Score=79.02 Aligned_cols=139 Identities=20% Similarity=0.214 Sum_probs=89.1
Q ss_pred CCCceEEEECCCCCChhH-HHHHHHHHcCCcEEEEecCccCChHHHHHHHHh-c------------CCC----eEEEEcC
Q 009640 226 AWKRGYLLYGPPGSGKSS-LIAAMANYLCYDVYDLELTKVTDNSELRALLLQ-T------------TNR----SIIVIED 287 (530)
Q Consensus 226 ~~~rG~LL~GPPGTGKTs-La~AiA~~l~~~i~~l~l~~~~~~~~L~~l~~~-~------------~~~----sII~IDe 287 (530)
.-.|+|+++||||+|||+ |.-++-+++-+++..++.+.-.........+.+ + ++| -|+|.||
T Consensus 1492 nt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lVLFcDe 1571 (3164)
T COG5245 1492 NTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTMTPSKLSVLERETEYYPNTGVVRLYPKPVVKDLVLFCDE 1571 (3164)
T ss_pred hccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccCCHHHHHHHHhhceeeccCCeEEEccCcchhheEEEeec
Confidence 346899999999999999 567899999999999998776544434444443 2 122 4899999
Q ss_pred ccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCC------CC
Q 009640 288 IDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCC------SE 361 (530)
Q Consensus 288 ID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~------~~ 361 (530)
|. + + .++. ...+..-.-+..|+ +=.|+|+.. -.
T Consensus 1572 In-L-p-~~~~-------------------------------------y~~~~vI~FlR~l~-e~QGfw~s~~~~wvTI~ 1610 (3164)
T COG5245 1572 IN-L-P-YGFE-------------------------------------YYPPTVIVFLRPLV-ERQGFWSSIAVSWVTIC 1610 (3164)
T ss_pred cC-C-c-cccc-------------------------------------cCCCceEEeeHHHH-HhcccccchhhhHhhhc
Confidence 98 2 1 0000 00011111111222 224566532 24
Q ss_pred CeEEEEEeCCCCCC-----ChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhC
Q 009640 362 EKIIVFTTNHRDSV-----DPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLG 408 (530)
Q Consensus 362 ~~ivI~TTN~~~~L-----DpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~ 408 (530)
++++.+++|.+.+. ...++| | ...|++.||.-.....|...++.
T Consensus 1611 ~i~l~Gacnp~td~gRv~~~eRf~r--~-~v~vf~~ype~~SL~~Iyea~l~ 1659 (3164)
T COG5245 1611 GIILYGACNPGTDEGRVKYYERFIR--K-PVFVFCCYPELASLRNIYEAVLM 1659 (3164)
T ss_pred ceEEEccCCCCCCcccCccHHHHhc--C-ceEEEecCcchhhHHHHHHHHHH
Confidence 57888999987643 355665 2 46688999999999999887774
No 294
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.30 E-value=0.0058 Score=62.49 Aligned_cols=153 Identities=20% Similarity=0.190 Sum_probs=95.2
Q ss_pred ccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHH---HHHcCCcEEEEecCccC-C-----
Q 009640 196 LALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAM---ANYLCYDVYDLELTKVT-D----- 266 (530)
Q Consensus 196 l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~Ai---A~~l~~~i~~l~l~~~~-~----- 266 (530)
+.|..+..+.+.+.+..-.-..+ ...+++.||.|+|||.++... +.+.|-+++.+.+.... +
T Consensus 26 l~g~~~~~~~l~~~lkqt~~~gE---------snsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al 96 (408)
T KOG2228|consen 26 LFGVQDEQKHLSELLKQTILHGE---------SNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIAL 96 (408)
T ss_pred eeehHHHHHHHHHHHHHHHHhcC---------CCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHH
Confidence 45555556666666665554433 468999999999999987633 34778888888765431 1
Q ss_pred ---------------------hHHHHHHHHhc-------CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhh
Q 009640 267 ---------------------NSELRALLLQT-------TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIK 318 (530)
Q Consensus 267 ---------------------~~~L~~l~~~~-------~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~ 318 (530)
...+.+++... ..+-|.++||||-..+
T Consensus 97 ~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~------------------------- 151 (408)
T KOG2228|consen 97 KGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAP------------------------- 151 (408)
T ss_pred HHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhcccc-------------------------
Confidence 11233333221 2345667789998631
Q ss_pred hhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCC---CChhhhcCCceeEE-EEeCCC
Q 009640 319 EMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDS---VDPALIRCGRMDVH-VSLGTC 394 (530)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~---LDpALlRpGR~d~~-I~~~~p 394 (530)
. ++.+ -|-|.+|-..++ ...+.||+.|.+-+. |...+.+ ||... |+|..+
T Consensus 152 --------------------h-~rQt--llYnlfDisqs~-r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~ 205 (408)
T KOG2228|consen 152 --------------------H-SRQT--LLYNLFDISQSA-RAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPS 205 (408)
T ss_pred --------------------c-hhhH--HHHHHHHHHhhc-CCCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCC
Confidence 1 1222 245555544432 456778887776654 4456666 99765 777543
Q ss_pred -CHHHHHHHHHHhhC
Q 009640 395 -GPHAFKVLAKNYLG 408 (530)
Q Consensus 395 -~~~~r~~i~~~~l~ 408 (530)
...+...+++..+.
T Consensus 206 ~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 206 LPLGDYVDLYRKLLS 220 (408)
T ss_pred CChHHHHHHHHHHhc
Confidence 67889999999884
No 295
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.29 E-value=0.0011 Score=63.82 Aligned_cols=63 Identities=16% Similarity=0.317 Sum_probs=41.6
Q ss_pred ceEEEECCCCCChhHHHHHHHHH-----cCCcEE-------------EEecC-cc---C-----ChHHHHHHHHhcC--C
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANY-----LCYDVY-------------DLELT-KV---T-----DNSELRALLLQTT--N 279 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~-----l~~~i~-------------~l~l~-~~---~-----~~~~L~~l~~~~~--~ 279 (530)
+-++|.||+|+||||+++.|+.. .|.++- .+... ++ . ....+..++.... .
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~~~ 105 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKKGE 105 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhccCCC
Confidence 57899999999999999999853 344321 11000 00 0 1134566677777 8
Q ss_pred CeEEEEcCccch
Q 009640 280 RSIIVIEDIDCS 291 (530)
Q Consensus 280 ~sII~IDeID~~ 291 (530)
|++|++||.-.-
T Consensus 106 p~llllDEp~~g 117 (199)
T cd03283 106 PVLFLLDEIFKG 117 (199)
T ss_pred CeEEEEecccCC
Confidence 999999997653
No 296
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=97.28 E-value=0.0013 Score=69.42 Aligned_cols=24 Identities=38% Similarity=0.409 Sum_probs=21.6
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l 252 (530)
..+|+.||+|+||||+++|++.++
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i 173 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHC 173 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999887
No 297
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.28 E-value=0.0016 Score=66.23 Aligned_cols=61 Identities=26% Similarity=0.358 Sum_probs=41.8
Q ss_pred CceEEEECCCCCChhHHHHHHHHHc----C-CcEEEEecCcc----------------------CChHHHHHHHHhcCCC
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYL----C-YDVYDLELTKV----------------------TDNSELRALLLQTTNR 280 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l----~-~~i~~l~l~~~----------------------~~~~~L~~l~~~~~~~ 280 (530)
++-++|.||+|+||||++..+|.++ + ..+..+..... .+..++.+.+......
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~~~~ 273 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRLRDK 273 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHccCC
Confidence 3468899999999999999999876 3 55555544331 2334556666666667
Q ss_pred eEEEEcCc
Q 009640 281 SIIVIEDI 288 (530)
Q Consensus 281 sII~IDeI 288 (530)
.+||||..
T Consensus 274 d~vliDt~ 281 (282)
T TIGR03499 274 DLILIDTA 281 (282)
T ss_pred CEEEEeCC
Confidence 78888753
No 298
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=97.27 E-value=0.00054 Score=76.87 Aligned_cols=54 Identities=24% Similarity=0.287 Sum_probs=43.4
Q ss_pred CCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCC
Q 009640 186 PFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCY 254 (530)
Q Consensus 186 ~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~ 254 (530)
...+|..|+++.++++.++.|...+.. ++.+||+||||||||++++++|..+..
T Consensus 23 ~~~~~~~~~~vigq~~a~~~L~~~~~~---------------~~~~l~~G~~G~GKttla~~l~~~l~~ 76 (637)
T PRK13765 23 IEVPERLIDQVIGQEHAVEVIKKAAKQ---------------RRHVMMIGSPGTGKSMLAKAMAELLPK 76 (637)
T ss_pred cccCcccHHHcCChHHHHHHHHHHHHh---------------CCeEEEECCCCCcHHHHHHHHHHHcCh
Confidence 345678999999999988766554431 247999999999999999999998863
No 299
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.27 E-value=0.0022 Score=68.42 Aligned_cols=62 Identities=23% Similarity=0.397 Sum_probs=41.5
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCcEEEEecCcc-CChHHHHHH---HHhcC--CCeEEEEcCccch
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKV-TDNSELRAL---LLQTT--NRSIIVIEDIDCS 291 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~-~~~~~L~~l---~~~~~--~~sII~IDeID~~ 291 (530)
-++++||-+||||++++-+...+.-.++.++..+. .+..++.+. +.... .++.||||||.++
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l~d~~~~~~~~~~~~~~yifLDEIq~v 106 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIELLDLLRAYIELKEREKSYIFLDEIQNV 106 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhHHHHHHHHHHhhccCCceEEEecccCc
Confidence 78999999999999998888877554333333332 233333322 22332 5589999999986
No 300
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=97.26 E-value=0.00055 Score=76.75 Aligned_cols=52 Identities=31% Similarity=0.374 Sum_probs=41.7
Q ss_pred CCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCc
Q 009640 189 HPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYD 255 (530)
Q Consensus 189 ~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~ 255 (530)
+...+++++|+++.++.+...+.. +++++|+||||||||++++++|+.++.+
T Consensus 13 ~~~~~~~viG~~~a~~~l~~a~~~---------------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 13 PERLIDQVIGQEEAVEIIKKAAKQ---------------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred chhhHhhccCHHHHHHHHHHHHHc---------------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 446789999999887766554431 2489999999999999999999999755
No 301
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.25 E-value=0.00097 Score=65.18 Aligned_cols=39 Identities=28% Similarity=0.392 Sum_probs=31.0
Q ss_pred cCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecC
Q 009640 224 GRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELT 262 (530)
Q Consensus 224 g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~ 262 (530)
|++...-++++||||||||+++..+|... +..++.++..
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 56666678999999999999999998755 6666666655
No 302
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.25 E-value=0.00097 Score=67.31 Aligned_cols=26 Identities=31% Similarity=0.549 Sum_probs=23.6
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCC
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCY 254 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~ 254 (530)
.++++.||||+|||||.++++..+..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~ 137 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILST 137 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCC
Confidence 58899999999999999999998843
No 303
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.23 E-value=0.0012 Score=64.32 Aligned_cols=29 Identities=31% Similarity=0.306 Sum_probs=24.6
Q ss_pred cCCCCceEEEECCCCCChhHHHHHHHHHc
Q 009640 224 GRAWKRGYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 224 g~~~~rG~LL~GPPGTGKTsLa~AiA~~l 252 (530)
|++...-+.|+||||+|||+|+..+|...
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~ 43 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEA 43 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHh
Confidence 56666779999999999999999988654
No 304
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.23 E-value=0.00065 Score=63.85 Aligned_cols=63 Identities=21% Similarity=0.238 Sum_probs=45.1
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccCChH-----------------------HHHHHHHh-cCCCeEEEE
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVTDNS-----------------------ELRALLLQ-TTNRSIIVI 285 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~~~~-----------------------~L~~l~~~-~~~~sII~I 285 (530)
-+|+.||||+|||++|..+|..++.+++.+......+.+ +|..++.. ..++.+|+|
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~~~~VlI 82 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAPGRCVLV 82 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCCCCEEEe
Confidence 379999999999999999999988777777655443332 24444444 345668888
Q ss_pred cCccchh
Q 009640 286 EDIDCSV 292 (530)
Q Consensus 286 DeID~~~ 292 (530)
|-+-.++
T Consensus 83 D~Lt~~~ 89 (170)
T PRK05800 83 DCLTTWV 89 (170)
T ss_pred hhHHHHH
Confidence 8777663
No 305
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.22 E-value=0.001 Score=61.14 Aligned_cols=65 Identities=23% Similarity=0.388 Sum_probs=41.0
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCCcEEEEecC--cc-----------------CChHHHHHH-HHh--cCCCeEEEEc
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELT--KV-----------------TDNSELRAL-LLQ--TTNRSIIVIE 286 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~--~~-----------------~~~~~L~~l-~~~--~~~~sII~ID 286 (530)
.-+.|.||+|+|||+|+++|+..+..+--.+.+. .+ -+..+.+++ +.. +..|.++++|
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i~ilD 105 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDLLLLD 105 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 4588999999999999999999874321111111 00 112233333 222 2689999999
Q ss_pred Cccchhh
Q 009640 287 DIDCSVD 293 (530)
Q Consensus 287 eID~~~~ 293 (530)
|...-+|
T Consensus 106 Ep~~~lD 112 (157)
T cd00267 106 EPTSGLD 112 (157)
T ss_pred CCCcCCC
Confidence 9987653
No 306
>PRK04296 thymidine kinase; Provisional
Probab=97.22 E-value=0.0023 Score=61.18 Aligned_cols=30 Identities=27% Similarity=0.262 Sum_probs=23.7
Q ss_pred eEEEECCCCCChhHHHHHHHHHc---CCcEEEE
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYL---CYDVYDL 259 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l 259 (530)
-.|++||||+|||+++..++..+ +..++.+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 36889999999999998888766 5555555
No 307
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.21 E-value=0.00029 Score=66.34 Aligned_cols=29 Identities=24% Similarity=0.456 Sum_probs=25.4
Q ss_pred EEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 231 YLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 231 ~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
+++.||||+||||+++.+|..+++..+++
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~is~ 30 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHLSA 30 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 68999999999999999999998765553
No 308
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.18 E-value=0.00029 Score=65.84 Aligned_cols=32 Identities=31% Similarity=0.372 Sum_probs=30.2
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCCcEEEEe
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCYDVYDLE 260 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~ 260 (530)
+.+.|.|++|+||||+.+++|+.|+++|+|.+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 46899999999999999999999999999985
No 309
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.18 E-value=0.00024 Score=66.51 Aligned_cols=37 Identities=35% Similarity=0.509 Sum_probs=25.8
Q ss_pred CceEEEECCCCCChhHHHHHHHHHcCCc---EEEEecCcc
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYLCYD---VYDLELTKV 264 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l~~~---i~~l~l~~~ 264 (530)
++.++|+||||+|||++++++...+... ++.+++...
T Consensus 24 ~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 24 PRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp ---EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 4789999999999999999998877444 666666554
No 310
>PRK14532 adenylate kinase; Provisional
Probab=97.17 E-value=0.00034 Score=66.41 Aligned_cols=30 Identities=20% Similarity=0.396 Sum_probs=26.8
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
.++|.||||+||||+++.+|..+++..++.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~ 31 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLST 31 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeC
Confidence 378999999999999999999999877654
No 311
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.17 E-value=0.00035 Score=63.68 Aligned_cols=28 Identities=36% Similarity=0.441 Sum_probs=24.8
Q ss_pred EEEECCCCCChhHHHHHHHHHcCCcEEE
Q 009640 231 YLLYGPPGSGKSSLIAAMANYLCYDVYD 258 (530)
Q Consensus 231 ~LL~GPPGTGKTsLa~AiA~~l~~~i~~ 258 (530)
++|.||||+||||+++.++..++..+++
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 6899999999999999999998776654
No 312
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.17 E-value=0.0099 Score=58.83 Aligned_cols=46 Identities=11% Similarity=0.131 Sum_probs=35.8
Q ss_pred CCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCC
Q 009640 361 EEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGI 409 (530)
Q Consensus 361 ~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~ 409 (530)
-++-+|+++...-.|||.++. -++..+-+. -+......|++++...
T Consensus 127 ~~is~i~l~Q~~~~lp~~iR~--n~~y~i~~~-~s~~dl~~i~~~~~~~ 172 (241)
T PF04665_consen 127 YNISIIFLSQSYFHLPPNIRS--NIDYFIIFN-NSKRDLENIYRNMNIK 172 (241)
T ss_pred cceEEEEEeeecccCCHHHhh--cceEEEEec-CcHHHHHHHHHhcccc
Confidence 346788889888999999866 888888776 4677777888877654
No 313
>PRK14531 adenylate kinase; Provisional
Probab=97.16 E-value=0.0004 Score=65.83 Aligned_cols=31 Identities=26% Similarity=0.441 Sum_probs=27.6
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
+-+++.||||+||||+++.+|..+|+..+++
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~ 33 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLST 33 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence 4589999999999999999999999887654
No 314
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.16 E-value=0.0014 Score=67.12 Aligned_cols=62 Identities=26% Similarity=0.384 Sum_probs=41.5
Q ss_pred CceEEEECCCCCChhHHHHHHHHHcC-----CcEEEEecC-c----------c---CChHHHHHHHHhc--CCCeEEEEc
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYLC-----YDVYDLELT-K----------V---TDNSELRALLLQT--TNRSIIVIE 286 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l~-----~~i~~l~l~-~----------~---~~~~~L~~l~~~~--~~~sII~ID 286 (530)
++++|+.||+|+||||+++|+++++. ..++.++-. + + .....+.+++..+ ..|.+|++.
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivG 211 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVG 211 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 46899999999999999999999872 334333210 0 0 0111455555544 679999999
Q ss_pred Ccc
Q 009640 287 DID 289 (530)
Q Consensus 287 eID 289 (530)
||=
T Consensus 212 EiR 214 (299)
T TIGR02782 212 EVR 214 (299)
T ss_pred ccC
Confidence 985
No 315
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.16 E-value=0.00067 Score=69.70 Aligned_cols=29 Identities=31% Similarity=0.380 Sum_probs=24.8
Q ss_pred CCCceEEEECCCCCChhHHHHHHHHHcCC
Q 009640 226 AWKRGYLLYGPPGSGKSSLIAAMANYLCY 254 (530)
Q Consensus 226 ~~~rG~LL~GPPGTGKTsLa~AiA~~l~~ 254 (530)
..++|+.||||-|.|||+|....-..+..
T Consensus 63 ~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~ 91 (367)
T COG1485 63 GPVRGLYLWGGVGRGKTMLMDLFYESLPG 91 (367)
T ss_pred CCCceEEEECCCCccHHHHHHHHHhhCCc
Confidence 45789999999999999999888777643
No 316
>PRK13948 shikimate kinase; Provisional
Probab=97.16 E-value=0.00046 Score=65.59 Aligned_cols=34 Identities=24% Similarity=0.145 Sum_probs=31.6
Q ss_pred CCceEEEECCCCCChhHHHHHHHHHcCCcEEEEe
Q 009640 227 WKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLE 260 (530)
Q Consensus 227 ~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~ 260 (530)
.++.++|.|+||+||||+++.+|..+++++++.+
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 3578999999999999999999999999999886
No 317
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.15 E-value=0.00084 Score=69.25 Aligned_cols=69 Identities=20% Similarity=0.264 Sum_probs=43.0
Q ss_pred cCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecCc---------------------cCChHHHHHH---HHh
Q 009640 224 GRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELTK---------------------VTDNSELRAL---LLQ 276 (530)
Q Consensus 224 g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~~---------------------~~~~~~L~~l---~~~ 276 (530)
|+|..+-+++|||||||||+|+..++... +..+..++... ..+..+...+ +.+
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 56666779999999999999987665544 44444443211 1111112222 223
Q ss_pred cCCCeEEEEcCccchh
Q 009640 277 TTNRSIIVIEDIDCSV 292 (530)
Q Consensus 277 ~~~~sII~IDeID~~~ 292 (530)
...+.+||||-+-++.
T Consensus 131 ~~~~~lIVIDSv~al~ 146 (321)
T TIGR02012 131 SGAVDIIVVDSVAALV 146 (321)
T ss_pred ccCCcEEEEcchhhhc
Confidence 3578899999998874
No 318
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.15 E-value=0.00038 Score=62.70 Aligned_cols=30 Identities=33% Similarity=0.457 Sum_probs=28.2
Q ss_pred EEEECCCCCChhHHHHHHHHHcCCcEEEEe
Q 009640 231 YLLYGPPGSGKSSLIAAMANYLCYDVYDLE 260 (530)
Q Consensus 231 ~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~ 260 (530)
+.+.|+||||||++++.+|..+++++++.+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 578999999999999999999999999886
No 319
>PRK06217 hypothetical protein; Validated
Probab=97.13 E-value=0.00041 Score=65.70 Aligned_cols=31 Identities=32% Similarity=0.380 Sum_probs=28.2
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCcEEEEe
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCYDVYDLE 260 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~ 260 (530)
-++|.|+||+||||+++++|..+++++++++
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999999887764
No 320
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.12 E-value=0.017 Score=67.81 Aligned_cols=32 Identities=31% Similarity=0.314 Sum_probs=26.0
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCCcEEEEec
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCYDVYDLEL 261 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l 261 (530)
+-++++||+|.|||+++...+...+ ++.-+++
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l 64 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSL 64 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC-CeEEEec
Confidence 5689999999999999999887776 6555544
No 321
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.11 E-value=0.0016 Score=63.92 Aligned_cols=28 Identities=29% Similarity=0.284 Sum_probs=23.6
Q ss_pred cCCCCceEEEECCCCCChhHHHHHHHHH
Q 009640 224 GRAWKRGYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 224 g~~~~rG~LL~GPPGTGKTsLa~AiA~~ 251 (530)
|++...-+.|+||||||||+|+..+|..
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~ 42 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVT 42 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4566667899999999999999998754
No 322
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.09 E-value=0.00041 Score=64.15 Aligned_cols=28 Identities=36% Similarity=0.603 Sum_probs=24.4
Q ss_pred EEEECCCCCChhHHHHHHHHHcCCcEEE
Q 009640 231 YLLYGPPGSGKSSLIAAMANYLCYDVYD 258 (530)
Q Consensus 231 ~LL~GPPGTGKTsLa~AiA~~l~~~i~~ 258 (530)
++|.||||+||||+++++++.++..+++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~ 28 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIE 28 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence 4789999999999999999999866544
No 323
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.08 E-value=0.00046 Score=65.47 Aligned_cols=29 Identities=34% Similarity=0.510 Sum_probs=26.1
Q ss_pred EEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 231 YLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 231 ~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
++|.||||+|||++++.||..+++.++++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 68999999999999999999998776664
No 324
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.08 E-value=0.011 Score=62.08 Aligned_cols=24 Identities=29% Similarity=0.510 Sum_probs=21.5
Q ss_pred EEEECCCCCChhHHHHHHHHHcCC
Q 009640 231 YLLYGPPGSGKSSLIAAMANYLCY 254 (530)
Q Consensus 231 ~LL~GPPGTGKTsLa~AiA~~l~~ 254 (530)
.|+.||||||||+|++.+|+.+..
T Consensus 136 ~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 136 GLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 599999999999999999998743
No 325
>PRK13946 shikimate kinase; Provisional
Probab=97.07 E-value=0.00048 Score=65.41 Aligned_cols=33 Identities=33% Similarity=0.432 Sum_probs=30.8
Q ss_pred CceEEEECCCCCChhHHHHHHHHHcCCcEEEEe
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLE 260 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~ 260 (530)
++.++|.|+||+|||++++.+|..+|+++++.+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 467999999999999999999999999999876
No 326
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.07 E-value=0.0083 Score=63.45 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=21.8
Q ss_pred eEEEECCCCCChhHHHHHHHHHcC
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLC 253 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~ 253 (530)
-+++.||||||||+|+.+|++...
T Consensus 170 ~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 170 RGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred EEEEECCCCCChhHHHHHHHHhhc
Confidence 389999999999999999999864
No 327
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.07 E-value=0.0015 Score=58.82 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=24.1
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCCc
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCYD 255 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~~ 255 (530)
.-++|.|+.|+|||++++++++.++..
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 458899999999999999999999753
No 328
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.07 E-value=0.00073 Score=73.11 Aligned_cols=69 Identities=26% Similarity=0.323 Sum_probs=45.7
Q ss_pred cCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecCccC--------------------ChHHHHHHHHhc--C
Q 009640 224 GRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELTKVT--------------------DNSELRALLLQT--T 278 (530)
Q Consensus 224 g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~~~~--------------------~~~~L~~l~~~~--~ 278 (530)
|++...-+||+||||+|||+|+..+|... +..++.++..+-. ...++..++... .
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 56666778999999999999999998765 5666666543210 011122222222 4
Q ss_pred CCeEEEEcCccchh
Q 009640 279 NRSIIVIEDIDCSV 292 (530)
Q Consensus 279 ~~sII~IDeID~~~ 292 (530)
.|.+||||.|..+.
T Consensus 156 ~~~lVVIDSIq~l~ 169 (446)
T PRK11823 156 KPDLVVIDSIQTMY 169 (446)
T ss_pred CCCEEEEechhhhc
Confidence 67889999988763
No 329
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.06 E-value=0.0011 Score=68.48 Aligned_cols=69 Identities=19% Similarity=0.241 Sum_probs=44.0
Q ss_pred cCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecCc---------------------cCChHHHHHHH---Hh
Q 009640 224 GRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELTK---------------------VTDNSELRALL---LQ 276 (530)
Q Consensus 224 g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~~---------------------~~~~~~L~~l~---~~ 276 (530)
|+|..+-+++|||||||||+|+-.+|... +..+..++... ..+..++..++ .+
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 46666678999999999999998776543 44555443321 11122222222 23
Q ss_pred cCCCeEEEEcCccchh
Q 009640 277 TTNRSIIVIEDIDCSV 292 (530)
Q Consensus 277 ~~~~sII~IDeID~~~ 292 (530)
...+.+||||-+-++.
T Consensus 131 s~~~~lIVIDSvaal~ 146 (325)
T cd00983 131 SGAVDLIVVDSVAALV 146 (325)
T ss_pred ccCCCEEEEcchHhhc
Confidence 3578899999998874
No 330
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.06 E-value=0.00058 Score=64.19 Aligned_cols=34 Identities=38% Similarity=0.623 Sum_probs=30.5
Q ss_pred CceEEEECCCCCChhHHHHHHHHHcCCcEEEEec
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLEL 261 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l 261 (530)
++.++|.||||+|||++++.+|+.+++++++.+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 3579999999999999999999999999988753
No 331
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.03 E-value=0.00048 Score=66.57 Aligned_cols=22 Identities=41% Similarity=0.827 Sum_probs=18.4
Q ss_pred EEEECCCCCChhHHHHHHHHHc
Q 009640 231 YLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 231 ~LL~GPPGTGKTsLa~AiA~~l 252 (530)
.++.||||||||+++.+++..+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 7899999999999888877776
No 332
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.03 E-value=0.0052 Score=64.74 Aligned_cols=24 Identities=33% Similarity=0.573 Sum_probs=21.5
Q ss_pred EEEECCCCCChhHHHHHHHHHcCC
Q 009640 231 YLLYGPPGSGKSSLIAAMANYLCY 254 (530)
Q Consensus 231 ~LL~GPPGTGKTsLa~AiA~~l~~ 254 (530)
.|++||||||||+|+++|++....
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~~ 195 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSITT 195 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHHh
Confidence 688899999999999999997744
No 333
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.03 E-value=0.0014 Score=51.86 Aligned_cols=29 Identities=34% Similarity=0.408 Sum_probs=23.3
Q ss_pred EEEECCCCCChhHHHHHHHHHc-CCcEEEE
Q 009640 231 YLLYGPPGSGKSSLIAAMANYL-CYDVYDL 259 (530)
Q Consensus 231 ~LL~GPPGTGKTsLa~AiA~~l-~~~i~~l 259 (530)
+.+.|+||+|||+++++++..+ +.++..+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i 31 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVL 31 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEE
Confidence 5688999999999999999997 3444444
No 334
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.01 E-value=0.0013 Score=63.44 Aligned_cols=60 Identities=20% Similarity=0.307 Sum_probs=38.4
Q ss_pred cCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccCChHHHHHHHHhcCCCeEEEEcCccch
Q 009640 224 GRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVTDNSELRALLLQTTNRSIIVIEDIDCS 291 (530)
Q Consensus 224 g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~~~~~L~~l~~~~~~~sII~IDeID~~ 291 (530)
|....--++|.|+.|+|||++++.|+.+. |.-.+....+... ...+...-||.|||++.+
T Consensus 48 g~k~d~~lvl~G~QG~GKStf~~~L~~~~----~~d~~~~~~~kd~----~~~l~~~~iveldEl~~~ 107 (198)
T PF05272_consen 48 GCKNDTVLVLVGKQGIGKSTFFRKLGPEY----FSDSINDFDDKDF----LEQLQGKWIVELDELDGL 107 (198)
T ss_pred CCcCceeeeEecCCcccHHHHHHHHhHHh----ccCccccCCCcHH----HHHHHHhHheeHHHHhhc
Confidence 33344567899999999999999997762 2212222222222 223344578999999986
No 335
>PF13245 AAA_19: Part of AAA domain
Probab=97.00 E-value=0.0011 Score=53.76 Aligned_cols=33 Identities=39% Similarity=0.610 Sum_probs=20.9
Q ss_pred eEEEECCCCCChhH-HHHHHHHHc------CCcEEEEecC
Q 009640 230 GYLLYGPPGSGKSS-LIAAMANYL------CYDVYDLELT 262 (530)
Q Consensus 230 G~LL~GPPGTGKTs-La~AiA~~l------~~~i~~l~l~ 262 (530)
-+++.||||||||+ ++..++..+ +..+..+..+
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t 51 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPT 51 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCC
Confidence 35569999999995 455555555 3445555443
No 336
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.98 E-value=0.00079 Score=62.78 Aligned_cols=31 Identities=32% Similarity=0.497 Sum_probs=28.9
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCcEEEEe
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCYDVYDLE 260 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~ 260 (530)
.++|.|+||+|||++++.+|..+++++++.+
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 5789999999999999999999999999875
No 337
>PRK08233 hypothetical protein; Provisional
Probab=96.97 E-value=0.0052 Score=57.50 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=21.4
Q ss_pred eEEEECCCCCChhHHHHHHHHHcC
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLC 253 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~ 253 (530)
-+.+.|+||+||||++.++|..++
T Consensus 5 iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 5 IITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 356789999999999999999885
No 338
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.96 E-value=0.00051 Score=63.89 Aligned_cols=29 Identities=31% Similarity=0.586 Sum_probs=26.5
Q ss_pred EEEECCCCCChhHHHHHHHHHcCCcEEEEe
Q 009640 231 YLLYGPPGSGKSSLIAAMANYLCYDVYDLE 260 (530)
Q Consensus 231 ~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~ 260 (530)
+++.|.|||||||++..++ .+|++++.++
T Consensus 3 I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 3 IAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred EEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 6899999999999999999 9999988764
No 339
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.96 E-value=0.0012 Score=69.68 Aligned_cols=69 Identities=23% Similarity=0.308 Sum_probs=44.9
Q ss_pred cCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecCccC--------------------ChHHHHHHHHh--cC
Q 009640 224 GRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELTKVT--------------------DNSELRALLLQ--TT 278 (530)
Q Consensus 224 g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~~~~--------------------~~~~L~~l~~~--~~ 278 (530)
|++...-+||+||||+|||+|+..+|..+ +..++.++..+-. ....+..++.. ..
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 45666678999999999999999998765 3456555432210 11122223222 25
Q ss_pred CCeEEEEcCccchh
Q 009640 279 NRSIIVIEDIDCSV 292 (530)
Q Consensus 279 ~~sII~IDeID~~~ 292 (530)
+|.+|+||.|..+.
T Consensus 158 ~~~lVVIDSIq~l~ 171 (372)
T cd01121 158 KPDLVIIDSIQTVY 171 (372)
T ss_pred CCcEEEEcchHHhh
Confidence 78999999998763
No 340
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.94 E-value=0.013 Score=63.06 Aligned_cols=35 Identities=29% Similarity=0.325 Sum_probs=26.1
Q ss_pred CceEEEECCCCCChhHHHHHHHHHc-----CCcEEEEecC
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYL-----CYDVYDLELT 262 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l-----~~~i~~l~l~ 262 (530)
.+-++|.||+|+||||++..||..+ +..+.-++..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D 260 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLD 260 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 3468899999999999999998765 2455555443
No 341
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.94 E-value=0.00076 Score=62.03 Aligned_cols=29 Identities=28% Similarity=0.452 Sum_probs=26.4
Q ss_pred EEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 231 YLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 231 ~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
+-+.|||||||||+++-+|.++|+++++-
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vsa 31 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVSA 31 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceeec
Confidence 45789999999999999999999998873
No 342
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.94 E-value=0.00082 Score=63.31 Aligned_cols=31 Identities=19% Similarity=0.355 Sum_probs=26.4
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
.-+++.||||+||||+++.+|..+|+..++.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~ 34 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTHLST 34 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 3578899999999999999999998765543
No 343
>PRK13764 ATPase; Provisional
Probab=96.93 E-value=0.0025 Score=70.86 Aligned_cols=62 Identities=26% Similarity=0.455 Sum_probs=40.1
Q ss_pred CceEEEECCCCCChhHHHHHHHHHcCC---cEEEEe------cCc-cC-------ChHHHHHHHHhcCCCeEEEEcCccc
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYLCY---DVYDLE------LTK-VT-------DNSELRALLLQTTNRSIIVIEDIDC 290 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l~~---~i~~l~------l~~-~~-------~~~~L~~l~~~~~~~sII~IDeID~ 290 (530)
+.++|+.||||+||||+++|++.++.. .+..++ +.. +. +...+.+.+. ...|.+|++||+=.
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~~~~~~~~~~~~lL-R~rPD~IivGEiRd 335 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSKLEGSMEETADILL-LVRPDYTIYDEMRK 335 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEeeccccHHHHHHHHH-hhCCCEEEECCCCC
Confidence 468999999999999999999998853 332332 111 10 1111222221 36799999999864
No 344
>PRK14530 adenylate kinase; Provisional
Probab=96.92 E-value=0.00089 Score=65.13 Aligned_cols=30 Identities=27% Similarity=0.426 Sum_probs=27.3
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
.++|.||||+||||+++.||..+++++++.
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 589999999999999999999999887755
No 345
>PRK05973 replicative DNA helicase; Provisional
Probab=96.92 E-value=0.0037 Score=61.80 Aligned_cols=39 Identities=23% Similarity=0.018 Sum_probs=28.9
Q ss_pred cCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecC
Q 009640 224 GRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELT 262 (530)
Q Consensus 224 g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~ 262 (530)
|++...-+|+.|+||+|||+|+-.+|... |.+++.+++.
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 45556679999999999999988776654 6666555443
No 346
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.92 E-value=0.0018 Score=66.95 Aligned_cols=64 Identities=33% Similarity=0.419 Sum_probs=48.6
Q ss_pred cc-cccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc-CCcEEEEecCc
Q 009640 193 FE-TLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL-CYDVYDLELTK 263 (530)
Q Consensus 193 f~-~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l-~~~i~~l~l~~ 263 (530)
|+ ++.|.++..++|++++..-..+-+ .-++-+||.||+|+|||||+..+.+.+ .+.+|.+..+-
T Consensus 59 f~~~~~G~~~~i~~lV~~fk~AA~g~~-------~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~P 124 (358)
T PF08298_consen 59 FEDEFYGMEETIERLVNYFKSAAQGLE-------ERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCP 124 (358)
T ss_pred ccccccCcHHHHHHHHHHHHHHHhccC-------ccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCc
Confidence 55 789999988888887665443222 335778999999999999999999888 56777775443
No 347
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.90 E-value=0.0017 Score=66.93 Aligned_cols=57 Identities=25% Similarity=0.332 Sum_probs=41.7
Q ss_pred ChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEe
Q 009640 199 EPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLE 260 (530)
Q Consensus 199 ~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~ 260 (530)
.++.++.+.+.+...+.... -......+.|.|+||+|||++++.+|..+|+++++++
T Consensus 109 ~~~~~~~~~~~l~~~~~~~~-----~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 109 SPAQLARVRDALSGMLGAGR-----RAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred CHHHHHHHHHHHHHHHhhhh-----hccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 45555556665555443222 1344567999999999999999999999999999754
No 348
>PRK13695 putative NTPase; Provisional
Probab=96.89 E-value=0.0078 Score=56.38 Aligned_cols=22 Identities=41% Similarity=0.777 Sum_probs=20.1
Q ss_pred EEEECCCCCChhHHHHHHHHHc
Q 009640 231 YLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 231 ~LL~GPPGTGKTsLa~AiA~~l 252 (530)
++|.|+||+|||||+..+++.+
T Consensus 3 i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999988775
No 349
>PRK02496 adk adenylate kinase; Provisional
Probab=96.89 E-value=0.00092 Score=63.22 Aligned_cols=29 Identities=28% Similarity=0.524 Sum_probs=26.4
Q ss_pred EEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 231 YLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 231 ~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
+++.||||+|||++++.+|..+++..+++
T Consensus 4 i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 78999999999999999999999877664
No 350
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.88 E-value=0.0017 Score=56.60 Aligned_cols=24 Identities=38% Similarity=0.368 Sum_probs=20.5
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l 252 (530)
++++++||||+|||+++.+.+..+
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHH
Confidence 368999999999999888777666
No 351
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.88 E-value=0.004 Score=61.33 Aligned_cols=22 Identities=36% Similarity=0.649 Sum_probs=20.6
Q ss_pred EEEECCCCCChhHHHHHHHHHc
Q 009640 231 YLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 231 ~LL~GPPGTGKTsLa~AiA~~l 252 (530)
+-+.||+|||||||.+.||...
T Consensus 32 vsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7789999999999999999977
No 352
>PRK06547 hypothetical protein; Provisional
Probab=96.88 E-value=0.0015 Score=61.49 Aligned_cols=33 Identities=30% Similarity=0.460 Sum_probs=28.6
Q ss_pred CceEEEECCCCCChhHHHHHHHHHcCCcEEEEe
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLE 260 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~ 260 (530)
+.-+++.||||+|||++++.+|..++..+++++
T Consensus 15 ~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 15 MITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 457889999999999999999999988777654
No 353
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=96.87 E-value=0.0011 Score=69.88 Aligned_cols=52 Identities=29% Similarity=0.505 Sum_probs=41.1
Q ss_pred CCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 190 PSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 190 ~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
..++++....+.+++.+.+. .+|+|+.||||.||||+|+|+|.++......+
T Consensus 243 k~~ledY~L~dkl~eRL~er------------------aeGILIAG~PGaGKsTFaqAlAefy~~~GkiV 294 (604)
T COG1855 243 KLSLEDYGLSDKLKERLEER------------------AEGILIAGAPGAGKSTFAQALAEFYASQGKIV 294 (604)
T ss_pred EechhhcCCCHHHHHHHHhh------------------hcceEEecCCCCChhHHHHHHHHHHHhcCcEE
Confidence 34678888888887776652 37999999999999999999999985544433
No 354
>PRK06762 hypothetical protein; Provisional
Probab=96.87 E-value=0.0012 Score=61.22 Aligned_cols=32 Identities=19% Similarity=0.289 Sum_probs=26.8
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCCcEEEEe
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCYDVYDLE 260 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~ 260 (530)
.-++|.|+||+||||+++.++..++..++.++
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~ 34 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVS 34 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEec
Confidence 45789999999999999999999965555553
No 355
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.87 E-value=0.0051 Score=57.84 Aligned_cols=24 Identities=38% Similarity=0.559 Sum_probs=21.9
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l 252 (530)
.-+.|.||+|+|||||+++||...
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 458899999999999999999976
No 356
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.87 E-value=0.003 Score=65.34 Aligned_cols=62 Identities=23% Similarity=0.348 Sum_probs=41.5
Q ss_pred CceEEEECCCCCChhHHHHHHHHHc-----CCcEEEEec-Ccc------------CChHHHHHHHHhc--CCCeEEEEcC
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYL-----CYDVYDLEL-TKV------------TDNSELRALLLQT--TNRSIIVIED 287 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l-----~~~i~~l~l-~~~------------~~~~~L~~l~~~~--~~~sII~IDe 287 (530)
+.++|+.||+|+||||+++|++.+. +..++.++- .++ .+.-.+.+++..+ ..|.+|++-|
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGE 223 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGE 223 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEee
Confidence 4689999999999999999999886 233444431 110 1112344555444 6899999999
Q ss_pred cc
Q 009640 288 ID 289 (530)
Q Consensus 288 ID 289 (530)
|=
T Consensus 224 iR 225 (323)
T PRK13833 224 VR 225 (323)
T ss_pred cC
Confidence 84
No 357
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.87 E-value=0.0027 Score=58.98 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=21.7
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l 252 (530)
.-+.|.||+|+|||||++.|+...
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 458899999999999999999876
No 358
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.86 E-value=0.0022 Score=61.71 Aligned_cols=24 Identities=50% Similarity=0.775 Sum_probs=21.5
Q ss_pred eEEEECCCCCChhHHHHHHHHHcC
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLC 253 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~ 253 (530)
-+++.||+|+||||++.+++.++.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 368899999999999999998884
No 359
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.86 E-value=0.0041 Score=56.59 Aligned_cols=64 Identities=23% Similarity=0.299 Sum_probs=41.0
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCCc---EE-----EEecCccCChHHHHHH-HHh--cCCCeEEEEcCccchh
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCYD---VY-----DLELTKVTDNSELRAL-LLQ--TTNRSIIVIEDIDCSV 292 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~~---i~-----~l~l~~~~~~~~L~~l-~~~--~~~~sII~IDeID~~~ 292 (530)
.-+.|.||+|+|||||+++|+..+... ++ .+....--+..+.+++ +.. +.+|.|+++||-..-+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~G~~~rv~laral~~~p~illlDEP~~~L 101 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHL 101 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCC
Confidence 458899999999999999999987321 10 1111000223344443 222 3789999999988754
No 360
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=96.85 E-value=0.0057 Score=65.53 Aligned_cols=91 Identities=12% Similarity=0.171 Sum_probs=67.2
Q ss_pred CCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecCccCC
Q 009640 190 PSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELTKVTD 266 (530)
Q Consensus 190 ~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~~~~~ 266 (530)
...+..++|....-.++.+.++....+. ..+||.|..||||..+|+||-... ..+++.+++..+-.
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~VA~Sd-----------~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe 287 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVVAKSD-----------STVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE 287 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHHhcCC-----------CeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch
Confidence 4467788998888888888777665543 589999999999999999998876 67899999887732
Q ss_pred hHHHHHHH-------Hhc----------CCCeEEEEcCccch
Q 009640 267 NSELRALL-------LQT----------TNRSIIVIEDIDCS 291 (530)
Q Consensus 267 ~~~L~~l~-------~~~----------~~~sII~IDeID~~ 291 (530)
+--=..+| ..+ ....-||+|||--+
T Consensus 288 sLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGel 329 (550)
T COG3604 288 SLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGEL 329 (550)
T ss_pred HHHHHHHhcccccccccchhccCcceeecCCCeEechhhccC
Confidence 21112222 222 34578999999876
No 361
>PRK14528 adenylate kinase; Provisional
Probab=96.85 E-value=0.001 Score=63.26 Aligned_cols=30 Identities=23% Similarity=0.490 Sum_probs=26.9
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
-+++.||||+||||+++.+|..+++..+++
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 489999999999999999999999887664
No 362
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.84 E-value=0.0011 Score=65.44 Aligned_cols=30 Identities=20% Similarity=0.469 Sum_probs=27.3
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
-++|.||||+||||+++.+|..+++..+++
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g~~~is~ 37 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKENLKHINM 37 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 389999999999999999999999887765
No 363
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.82 E-value=0.0029 Score=60.11 Aligned_cols=26 Identities=31% Similarity=0.663 Sum_probs=23.2
Q ss_pred CceEEEECCCCCChhHHHHHHHHHcC
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYLC 253 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l~ 253 (530)
...+++.||+|+||||++++++..+.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 35789999999999999999999874
No 364
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.81 E-value=0.0059 Score=57.07 Aligned_cols=24 Identities=33% Similarity=0.594 Sum_probs=21.9
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l 252 (530)
.-+.|.||+|+|||||+++||..+
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 458899999999999999999986
No 365
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.81 E-value=0.014 Score=61.75 Aligned_cols=49 Identities=27% Similarity=0.396 Sum_probs=35.3
Q ss_pred hhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc
Q 009640 200 PQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 200 ~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l 252 (530)
.++++.+.+.+..++..+..+. ..++-++|.||+|+||||++..||..+
T Consensus 217 ~~~~~~l~~~l~~~l~~~~~~~----~~~~vI~LVGptGvGKTTTiaKLA~~L 265 (436)
T PRK11889 217 EEVIEYILEDMRSHFNTENVFE----KEVQTIALIGPTGVGKTTTLAKMAWQF 265 (436)
T ss_pred HHHHHHHHHHHHHHhccccccc----cCCcEEEEECCCCCcHHHHHHHHHHHH
Confidence 4566667777766665442221 124678999999999999999999877
No 366
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.79 E-value=0.005 Score=62.11 Aligned_cols=89 Identities=26% Similarity=0.462 Sum_probs=55.1
Q ss_pred ccccCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCce-EEEECCCCCChhHHHHHHHHHcCC----cE
Q 009640 182 WVSVPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRG-YLLYGPPGSGKSSLIAAMANYLCY----DV 256 (530)
Q Consensus 182 w~~~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG-~LL~GPPGTGKTsLa~AiA~~l~~----~i 256 (530)
+..+| ....+|+.+..++-+.+ +. . .++| +|+.||.|+||||..+||-++.+. ++
T Consensus 98 lR~Ip-~~i~~~e~LglP~i~~~-~~-------~-----------~~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HI 157 (353)
T COG2805 98 LRLIP-SKIPTLEELGLPPIVRE-LA-------E-----------SPRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHI 157 (353)
T ss_pred EeccC-ccCCCHHHcCCCHHHHH-HH-------h-----------CCCceEEEeCCCCCcHHHHHHHHHHHHhccCCcce
Confidence 44444 45668999988775444 21 1 1467 566899999999999999999854 45
Q ss_pred EEEec-Ccc--CCh-------------HHHHHHHHhc--CCCeEEEEcCccc
Q 009640 257 YDLEL-TKV--TDN-------------SELRALLLQT--TNRSIIVIEDIDC 290 (530)
Q Consensus 257 ~~l~l-~~~--~~~-------------~~L~~l~~~~--~~~sII~IDeID~ 290 (530)
+.++- -++ .+. ......|..+ ..|.||++-|+=.
T Consensus 158 lTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVIlvGEmRD 209 (353)
T COG2805 158 LTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVILVGEMRD 209 (353)
T ss_pred EEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEEEEecccc
Confidence 54431 111 111 1122223333 5799999998853
No 367
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.79 E-value=0.0046 Score=59.43 Aligned_cols=21 Identities=24% Similarity=0.534 Sum_probs=19.6
Q ss_pred ceEEEECCCCCChhHHHHHHH
Q 009640 229 RGYLLYGPPGSGKSSLIAAMA 249 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA 249 (530)
+-++|.||.|+|||+|.+.|+
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 469999999999999999998
No 368
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.78 E-value=0.0043 Score=58.24 Aligned_cols=62 Identities=23% Similarity=0.236 Sum_probs=44.0
Q ss_pred EEEECCCCCChhHHHHHHHHHcCCcEEEEecCccCC-----------------------hHHHHHHHHhcCCCeEEEEcC
Q 009640 231 YLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVTD-----------------------NSELRALLLQTTNRSIIVIED 287 (530)
Q Consensus 231 ~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~~-----------------------~~~L~~l~~~~~~~sII~IDe 287 (530)
+|+.||||+|||++|..+|...+.+++.+......+ ..+|.+.+...+.+.+|+||-
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~~VLIDc 81 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELDPGDVVLIDC 81 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCCEEEEEc
Confidence 589999999999999999988777777775544322 123444454444567888888
Q ss_pred ccchh
Q 009640 288 IDCSV 292 (530)
Q Consensus 288 ID~~~ 292 (530)
+...+
T Consensus 82 lt~~~ 86 (169)
T cd00544 82 LTLWV 86 (169)
T ss_pred HhHHH
Confidence 77663
No 369
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.77 E-value=0.0055 Score=58.95 Aligned_cols=64 Identities=23% Similarity=0.356 Sum_probs=40.1
Q ss_pred ceEEEECCCCCChhHHHHHHHH-H----cCCcE--------------EEEecCcc-C--------ChHHHHHHHHhcCCC
Q 009640 229 RGYLLYGPPGSGKSSLIAAMAN-Y----LCYDV--------------YDLELTKV-T--------DNSELRALLLQTTNR 280 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~-~----l~~~i--------------~~l~l~~~-~--------~~~~L~~l~~~~~~~ 280 (530)
.-++|.||.|+|||++.+.|+. . .|..+ +.+..... . ....+..++.....|
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi~~~~~~~d~i~~~~s~~~~e~~~l~~i~~~~~~~ 109 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIFTRIGAEDSISDGRSTFMAELLELKEILSLATPR 109 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEEEEEecCcccccCCceeHHHHHHHHHHHHHhccCC
Confidence 4589999999999999999993 2 22211 11111100 0 112344445556899
Q ss_pred eEEEEcCccchh
Q 009640 281 SIIVIEDIDCSV 292 (530)
Q Consensus 281 sII~IDeID~~~ 292 (530)
.++++||.-.-+
T Consensus 110 ~llllDEp~~gl 121 (202)
T cd03243 110 SLVLIDELGRGT 121 (202)
T ss_pred eEEEEecCCCCC
Confidence 999999997643
No 370
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.76 E-value=0.0013 Score=64.03 Aligned_cols=29 Identities=28% Similarity=0.457 Sum_probs=26.4
Q ss_pred EEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 231 YLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 231 ~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
++++||||+|||++++.||..+++..+++
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 79999999999999999999999777664
No 371
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.76 E-value=0.0013 Score=63.78 Aligned_cols=29 Identities=31% Similarity=0.486 Sum_probs=26.1
Q ss_pred EEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 231 YLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 231 ~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
+++.||||+||||+++.+|..+++..+++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 68999999999999999999998877663
No 372
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.74 E-value=0.0039 Score=59.99 Aligned_cols=37 Identities=30% Similarity=0.330 Sum_probs=28.5
Q ss_pred ChhhHhhhc--CCCCceEEEECCCCCChhHHHHHHHHHc
Q 009640 216 GKEFYHRVG--RAWKRGYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 216 ~~~~y~~~g--~~~~rG~LL~GPPGTGKTsLa~AiA~~l 252 (530)
+.+.-+++| +|.+.=+|+.|+.|||||-|...+|--+
T Consensus 14 ndelDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~ 52 (235)
T COG2874 14 NDELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGF 52 (235)
T ss_pred cHHHHhhccCCCccCeEEEEECCCCccHHHHHHHHHHHH
Confidence 445555554 6776668899999999999999998644
No 373
>PLN02200 adenylate kinase family protein
Probab=96.74 E-value=0.0017 Score=64.31 Aligned_cols=31 Identities=19% Similarity=0.316 Sum_probs=26.2
Q ss_pred CceEEEECCCCCChhHHHHHHHHHcCCcEEE
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYLCYDVYD 258 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~ 258 (530)
+.-+++.||||+||||+++.+|..+|+..+.
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g~~his 73 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFGFKHLS 73 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCeEEE
Confidence 3457889999999999999999999876443
No 374
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=96.73 E-value=0.0038 Score=66.63 Aligned_cols=200 Identities=17% Similarity=0.192 Sum_probs=108.8
Q ss_pred cccCChhhhHHHHHHHHHHHcChhhHhhhcCCC--CceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCc--cC-ChHH
Q 009640 195 TLALEPQLKKQITEDLTAFANGKEFYHRVGRAW--KRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTK--VT-DNSE 269 (530)
Q Consensus 195 ~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~--~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~--~~-~~~~ 269 (530)
+|.|.+++|+.+.-.+. ..++.--.-|... .-+++|.|.||.-||-|.+.|.+-.-..+|.---.+ +. +..-
T Consensus 343 EIyGheDVKKaLLLlLV---Ggvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSSGVGLTAAV 419 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLV---GGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSSGVGLTAAV 419 (721)
T ss_pred hhccchHHHHHHHHHhh---CCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCCccccchhh
Confidence 46788888887655443 2222111122222 124899999999999999999998877777653211 11 1111
Q ss_pred HHHHHH----------hcCCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCc
Q 009640 270 LRALLL----------QTTNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEE 339 (530)
Q Consensus 270 L~~l~~----------~~~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (530)
++.-.. -.....|..|||+|.+-+ .+|..- -| +. +..
T Consensus 420 mkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e--~DRtAI----------------HE----VM-----------EQQ 466 (721)
T KOG0482|consen 420 MKDPVTGEMVLEGGALVLADGGICCIDEFDKMDE--SDRTAI----------------HE----VM-----------EQQ 466 (721)
T ss_pred hcCCCCCeeEeccceEEEccCceEeehhhhhhhh--hhhHHH----------------HH----HH-----------Hhh
Confidence 111110 014567999999999832 122110 00 00 000
Q ss_pred chhhhHHHHhhhccCCccCCCCCeEEEEEeCCCC-------------CCChhhhcCCceeEEEEe-CCCCHHHHHHHHHH
Q 009640 340 SGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRD-------------SVDPALIRCGRMDVHVSL-GTCGPHAFKVLAKN 405 (530)
Q Consensus 340 ~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~-------------~LDpALlRpGR~d~~I~~-~~p~~~~r~~i~~~ 405 (530)
.-.....+++..+. .+.-|+++.|... .|++||++ |||....+ ..||.+.=..|+++
T Consensus 467 TISIaKAGI~TtLN-------AR~sILaAANPayGRYnprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~H 537 (721)
T KOG0482|consen 467 TISIAKAGINTTLN-------ARTSILAAANPAYGRYNPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQH 537 (721)
T ss_pred hhhhhhhccccchh-------hhHHhhhhcCccccccCcccChhHhcCCcHHHHH--hhhhhhhhccCCcccchHHHHHH
Confidence 01111122222221 2233666776532 58999999 99975554 78999888888887
Q ss_pred hhCCcCcc---------chHHHHH---HHHHhCCCCCHHHHHHHHH
Q 009640 406 YLGIESHH---------ALFDVVE---SCIRAGGALTPAQIGEVLL 439 (530)
Q Consensus 406 ~l~~~~~~---------~~~~~i~---~l~~~~~~~spadi~~~l~ 439 (530)
..-...|. ...+.+. .+++.-.-+.|.++.+.+.
T Consensus 538 iTyVH~H~~qp~~~fepl~~~~mR~yI~~ak~~~P~vp~~l~dyi~ 583 (721)
T KOG0482|consen 538 ITYVHQHEEQPPLDFEPLDPNLMRRYISLAKRKNPVVPEALADYIT 583 (721)
T ss_pred hHhhhccCCCCCccCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHH
Confidence 76543222 0122233 3344456677778777664
No 375
>PRK04182 cytidylate kinase; Provisional
Probab=96.73 E-value=0.0014 Score=61.17 Aligned_cols=29 Identities=31% Similarity=0.509 Sum_probs=26.8
Q ss_pred EEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 231 YLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 231 ~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
++|.|+||+|||++++++|..+++++++.
T Consensus 3 I~i~G~~GsGKstia~~la~~lg~~~id~ 31 (180)
T PRK04182 3 ITISGPPGSGKTTVARLLAEKLGLKHVSA 31 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEecH
Confidence 68999999999999999999999988873
No 376
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.72 E-value=0.0071 Score=62.56 Aligned_cols=62 Identities=27% Similarity=0.442 Sum_probs=40.8
Q ss_pred CceEEEECCCCCChhHHHHHHHHHc-----CCcEEEEec-Ccc------------CChHHHHHHHHhc--CCCeEEEEcC
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYL-----CYDVYDLEL-TKV------------TDNSELRALLLQT--TNRSIIVIED 287 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l-----~~~i~~l~l-~~~------------~~~~~L~~l~~~~--~~~sII~IDe 287 (530)
+..+++.||+|+||||+++|++.+. ...++.++- .++ ...-.+.+++..+ ..|..|++.|
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivGE 227 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVGE 227 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 4689999999999999999999874 122332210 000 1112345555544 6899999999
Q ss_pred cc
Q 009640 288 ID 289 (530)
Q Consensus 288 ID 289 (530)
|-
T Consensus 228 iR 229 (319)
T PRK13894 228 VR 229 (319)
T ss_pred cC
Confidence 86
No 377
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.72 E-value=0.0012 Score=57.88 Aligned_cols=22 Identities=36% Similarity=0.590 Sum_probs=20.9
Q ss_pred EEEECCCCCChhHHHHHHHHHc
Q 009640 231 YLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 231 ~LL~GPPGTGKTsLa~AiA~~l 252 (530)
++|.|+|||||||+++.++..+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5899999999999999999998
No 378
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.71 E-value=0.0025 Score=59.20 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=21.2
Q ss_pred eEEEECCCCCChhHHHHHHHHHc
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l 252 (530)
-+++.||+|||||+|.+++|+..
T Consensus 31 ~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHhcc
Confidence 48999999999999999999965
No 379
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.71 E-value=0.0042 Score=60.13 Aligned_cols=62 Identities=23% Similarity=0.253 Sum_probs=38.8
Q ss_pred ceEEEECCCCCChhHHHHHHHHH-----cCCcEEEE--------------ecCc-cC--------ChHHHHHHHHhcCCC
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANY-----LCYDVYDL--------------ELTK-VT--------DNSELRALLLQTTNR 280 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~-----l~~~i~~l--------------~l~~-~~--------~~~~L~~l~~~~~~~ 280 (530)
+-++|.||.|+|||++++.++.. +|..+-.. ...+ +. ...++..++..+..|
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il~~~~~~ 109 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYILDYADGD 109 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhhcCccChhheeEecCCccccchhhhHHHHHHHHHHHHHHhcCCC
Confidence 56899999999999999998732 23322100 0000 00 011344445556789
Q ss_pred eEEEEcCccc
Q 009640 281 SIIVIEDIDC 290 (530)
Q Consensus 281 sII~IDeID~ 290 (530)
+++++||+..
T Consensus 110 ~lvllDE~~~ 119 (204)
T cd03282 110 SLVLIDELGR 119 (204)
T ss_pred cEEEeccccC
Confidence 9999999865
No 380
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.68 E-value=0.021 Score=60.59 Aligned_cols=87 Identities=23% Similarity=0.382 Sum_probs=56.0
Q ss_pred EEEEeCCCC---CCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCc--------------------cchHHHHHH
Q 009640 365 IVFTTNHRD---SVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESH--------------------HALFDVVES 421 (530)
Q Consensus 365 vI~TTN~~~---~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~--------------------~~~~~~i~~ 421 (530)
|||.|+.+. .|..|| |.|.-+.|.++.++.+.-+..+...|..... ......++.
T Consensus 186 VIFlT~dv~~~k~LskaL--Pn~vf~tI~L~Das~~~Ak~yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~ 263 (431)
T PF10443_consen 186 VIFLTDDVSYSKPLSKAL--PNRVFKTISLSDASPESAKQYVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDE 263 (431)
T ss_pred EEEECCCCchhhhHHHhC--CCCceeEEeecCCCHHHHHHHHHHHhcccccccccccccccccccccccccccchHHHHH
Confidence 555554443 455565 4488899999999999999999888865311 013344555
Q ss_pred HHHh-CCCCCHHHHHHHHHH--hccCHHHHHHHHHHH
Q 009640 422 CIRA-GGALTPAQIGEVLLR--NRGNVDLAMKEVVSA 455 (530)
Q Consensus 422 l~~~-~~~~spadi~~~l~~--~~~d~~~al~~l~~~ 455 (530)
++.. +..+| ||+.++.+ ....|..|++++++.
T Consensus 264 ~i~~LGGRlt--DLe~lvrRiksGe~p~~Av~~iI~q 298 (431)
T PF10443_consen 264 CIEPLGGRLT--DLEFLVRRIKSGESPEEAVEEIISQ 298 (431)
T ss_pred HHHHcCCcHH--HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 5542 33344 56666654 446899999988854
No 381
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.67 E-value=0.0015 Score=61.30 Aligned_cols=31 Identities=29% Similarity=0.357 Sum_probs=26.6
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
+-++|.||||+||||++++++..++..++.+
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~ 33 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHF 33 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCcccc
Confidence 4589999999999999999999987766544
No 382
>PRK14527 adenylate kinase; Provisional
Probab=96.67 E-value=0.0012 Score=62.83 Aligned_cols=31 Identities=26% Similarity=0.479 Sum_probs=26.6
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
.-++++||||+||||+++.+|..++...++.
T Consensus 7 ~~i~i~G~pGsGKsT~a~~La~~~~~~~is~ 37 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQAERLAQELGLKKLST 37 (191)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCCCCc
Confidence 4589999999999999999999998765543
No 383
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.66 E-value=0.0013 Score=60.82 Aligned_cols=26 Identities=38% Similarity=0.644 Sum_probs=20.7
Q ss_pred EEEECCCCCChhHHHHHHHHHcCCcEE
Q 009640 231 YLLYGPPGSGKSSLIAAMANYLCYDVY 257 (530)
Q Consensus 231 ~LL~GPPGTGKTsLa~AiA~~l~~~i~ 257 (530)
+.|.|+||||||||++++|.. |+.++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 689999999999999999999 77755
No 384
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.65 E-value=0.0029 Score=63.87 Aligned_cols=61 Identities=23% Similarity=0.389 Sum_probs=34.6
Q ss_pred EEEECCCCCChhHHHHHHHHHc---CCcEEEEecCcc----------CChHHHHHHHHh----c-CCCeEEEEcCccch
Q 009640 231 YLLYGPPGSGKSSLIAAMANYL---CYDVYDLELTKV----------TDNSELRALLLQ----T-TNRSIIVIEDIDCS 291 (530)
Q Consensus 231 ~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~~~----------~~~~~L~~l~~~----~-~~~sII~IDeID~~ 291 (530)
++|+|.||+|||++++.|+.++ +..+..++...+ ..+..++..+.. . ....||++|+.--+
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~Dd~nYi 82 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSKDTIVILDDNNYI 82 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT-SEEEE-S---S
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhccCeEEEEeCCchH
Confidence 6899999999999999999986 566666652221 123334444332 2 56789999998865
No 385
>PRK09354 recA recombinase A; Provisional
Probab=96.64 E-value=0.0039 Score=65.01 Aligned_cols=69 Identities=19% Similarity=0.256 Sum_probs=42.4
Q ss_pred cCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecCc---------------------cCChHHHHHH---HHh
Q 009640 224 GRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELTK---------------------VTDNSELRAL---LLQ 276 (530)
Q Consensus 224 g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~~---------------------~~~~~~L~~l---~~~ 276 (530)
|+|..+-+++|||||||||+|+..++... +.....++... ..+..+...+ +.+
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~ 135 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVR 135 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 46666778999999999999998765433 44444333221 1111122122 223
Q ss_pred cCCCeEEEEcCccchh
Q 009640 277 TTNRSIIVIEDIDCSV 292 (530)
Q Consensus 277 ~~~~sII~IDeID~~~ 292 (530)
...+.+||||=|-++.
T Consensus 136 s~~~~lIVIDSvaaL~ 151 (349)
T PRK09354 136 SGAVDLIVVDSVAALV 151 (349)
T ss_pred cCCCCEEEEeChhhhc
Confidence 3578899999988874
No 386
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.63 E-value=0.0085 Score=56.11 Aligned_cols=23 Identities=39% Similarity=0.657 Sum_probs=21.3
Q ss_pred eEEEECCCCCChhHHHHHHHHHc
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l 252 (530)
-+.|.||+|+|||+|+++||..+
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 48899999999999999999976
No 387
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.61 E-value=0.0019 Score=59.76 Aligned_cols=29 Identities=31% Similarity=0.588 Sum_probs=26.6
Q ss_pred EEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 231 YLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 231 ~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
+.++|+||+|||++++.+|+.+++++++.
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 67999999999999999999999998764
No 388
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.60 E-value=0.0086 Score=55.54 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=19.5
Q ss_pred ceEEEECCCCCChhH-HHHHHHHHcC
Q 009640 229 RGYLLYGPPGSGKSS-LIAAMANYLC 253 (530)
Q Consensus 229 rG~LL~GPPGTGKTs-La~AiA~~l~ 253 (530)
+.+++.||+|||||. ++..+...+.
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~~ 50 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALK 50 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHhc
Confidence 578999999999999 5555555543
No 389
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.60 E-value=0.0017 Score=59.35 Aligned_cols=27 Identities=30% Similarity=0.502 Sum_probs=23.4
Q ss_pred EECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 233 LYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 233 L~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
|.||||+|||++++.||..+++..+++
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~ 27 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISV 27 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEH
T ss_pred CcCCCCCChHHHHHHHHHhcCcceech
Confidence 579999999999999999998765553
No 390
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.60 E-value=0.0021 Score=61.94 Aligned_cols=32 Identities=38% Similarity=0.575 Sum_probs=25.8
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCcEEEEec
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCYDVYDLEL 261 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l 261 (530)
-|+++||+|||||.++-++|+.+|.+++.++-
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Dr 34 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDR 34 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-S
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecc
Confidence 47999999999999999999999999988863
No 391
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=96.59 E-value=0.023 Score=65.61 Aligned_cols=63 Identities=17% Similarity=0.365 Sum_probs=40.2
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc-----CCc----------EEEEecCccCC--------------hHHHHHHHHhcCC
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYL-----CYD----------VYDLELTKVTD--------------NSELRALLLQTTN 279 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l-----~~~----------i~~l~l~~~~~--------------~~~L~~l~~~~~~ 279 (530)
+.++|.||.|+|||++.+.++... |.. +++--.+.+.+ ...+..++..+..
T Consensus 323 ~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~~~~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~il~~~~~ 402 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHSEIPYFEEIFADIGDEQSIEQNLSTFSGHMKNISAILSKTTE 402 (771)
T ss_pred eEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCccccccchhheeeecChHhHHhhhhhHHHHHHHHHHHHHHhcCC
Confidence 578999999999999999998762 211 11111111111 1123444555678
Q ss_pred CeEEEEcCccch
Q 009640 280 RSIIVIEDIDCS 291 (530)
Q Consensus 280 ~sII~IDeID~~ 291 (530)
|++|+|||+-.-
T Consensus 403 ~sLvLlDE~g~G 414 (771)
T TIGR01069 403 NSLVLFDELGAG 414 (771)
T ss_pred CcEEEecCCCCC
Confidence 999999999753
No 392
>PRK04040 adenylate kinase; Provisional
Probab=96.58 E-value=0.0022 Score=61.24 Aligned_cols=29 Identities=24% Similarity=0.492 Sum_probs=25.2
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc--CCcEE
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYL--CYDVY 257 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l--~~~i~ 257 (530)
.-++++|+|||||||+++.++..+ ++.++
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 457899999999999999999999 56554
No 393
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.57 E-value=0.0062 Score=61.43 Aligned_cols=84 Identities=24% Similarity=0.353 Sum_probs=56.3
Q ss_pred cccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccCCh----HHH
Q 009640 195 TLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVTDN----SEL 270 (530)
Q Consensus 195 ~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~~~----~~L 270 (530)
+++.-+++.+.|.. +.+-+..| ....||.|.+||||.|+++-.|.-.+++++.+..+.-.+. .+|
T Consensus 9 ~lVlf~~ai~hi~r-i~RvL~~~----------~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~~~~f~~dL 77 (268)
T PF12780_consen 9 NLVLFDEAIEHIAR-ISRVLSQP----------RGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYSIKDFKEDL 77 (268)
T ss_dssp -----HHHHHHHHH-HHHHHCST----------TEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTHHHHHHHHH
T ss_pred ceeeHHHHHHHHHH-HHHHHcCC----------CCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcCHHHHHHHH
Confidence 45556666666555 44444443 2468999999999999999999999999999987764332 457
Q ss_pred HHHHHhc---CCCeEEEEcCcc
Q 009640 271 RALLLQT---TNRSIIVIEDID 289 (530)
Q Consensus 271 ~~l~~~~---~~~sII~IDeID 289 (530)
+.++.++ ..|.+++|+|-+
T Consensus 78 k~~~~~ag~~~~~~vfll~d~q 99 (268)
T PF12780_consen 78 KKALQKAGIKGKPTVFLLTDSQ 99 (268)
T ss_dssp HHHHHHHHCS-S-EEEEEECCC
T ss_pred HHHHHHHhccCCCeEEEecCcc
Confidence 7777665 578999998854
No 394
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.57 E-value=0.0065 Score=57.69 Aligned_cols=62 Identities=16% Similarity=0.322 Sum_probs=39.2
Q ss_pred EEEECCCCCChhHHHHHHHH-----HcCCcE---------E-----EEecCccC---------ChHHHHHHHHhcCCCeE
Q 009640 231 YLLYGPPGSGKSSLIAAMAN-----YLCYDV---------Y-----DLELTKVT---------DNSELRALLLQTTNRSI 282 (530)
Q Consensus 231 ~LL~GPPGTGKTsLa~AiA~-----~l~~~i---------~-----~l~l~~~~---------~~~~L~~l~~~~~~~sI 282 (530)
++|+||.|.|||++++.++- ..|..+ + .+...+.. .-..+..++..+..|++
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~l 81 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENSL 81 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCeE
Confidence 68999999999999999983 223222 1 11111100 11234455666679999
Q ss_pred EEEcCccchh
Q 009640 283 IVIEDIDCSV 292 (530)
Q Consensus 283 I~IDeID~~~ 292 (530)
+++||+-.-+
T Consensus 82 lllDEp~~g~ 91 (185)
T smart00534 82 VLLDELGRGT 91 (185)
T ss_pred EEEecCCCCC
Confidence 9999998643
No 395
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=96.57 E-value=0.0098 Score=61.07 Aligned_cols=82 Identities=17% Similarity=0.297 Sum_probs=50.5
Q ss_pred ChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEE----EecCccCChHHHHHHH
Q 009640 199 EPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYD----LELTKVTDNSELRALL 274 (530)
Q Consensus 199 ~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~----l~l~~~~~~~~L~~l~ 274 (530)
++++++-+.+.+-.-+... .+...-++|+|+.|+|||+++..|...+|-.... +.+....++ +--+
T Consensus 54 d~~~~~~l~~~lg~~L~~~-------~~~~~~~~l~G~g~nGKStl~~~l~~l~G~~~~~~~~~~~~~~~~~~---~f~~ 123 (304)
T TIGR01613 54 DNELIEYLQRVIGYSLTGN-------YTEQKLFFLYGNGGNGKSTFQNLLSNLLGDYATTAVASLKMNEFQEH---RFGL 123 (304)
T ss_pred CHHHHHHHHHHHhHHhcCC-------CCceEEEEEECCCCCcHHHHHHHHHHHhChhhccCCcchhhhhccCC---Cchh
Confidence 4445555555554444332 2446789999999999999999999888754321 112221110 1112
Q ss_pred HhcCCCeEEEEcCccc
Q 009640 275 LQTTNRSIIVIEDIDC 290 (530)
Q Consensus 275 ~~~~~~sII~IDeID~ 290 (530)
.....+.+++++|++.
T Consensus 124 a~l~gk~l~~~~E~~~ 139 (304)
T TIGR01613 124 ARLEGKRAVIGDEVQK 139 (304)
T ss_pred hhhcCCEEEEecCCCC
Confidence 3345678999999874
No 396
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.56 E-value=0.052 Score=55.94 Aligned_cols=22 Identities=9% Similarity=0.120 Sum_probs=18.0
Q ss_pred EEEeCCCCHHHHHHHHHHhhCC
Q 009640 388 HVSLGTCGPHAFKVLAKNYLGI 409 (530)
Q Consensus 388 ~I~~~~p~~~~r~~i~~~~l~~ 409 (530)
.|+++..+.++.+.++..|...
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~ 279 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADS 279 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHC
Confidence 5788888999999998888753
No 397
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.56 E-value=0.0043 Score=58.63 Aligned_cols=22 Identities=32% Similarity=0.341 Sum_probs=19.3
Q ss_pred ceEEEECCCCCChhHHHHHHHH
Q 009640 229 RGYLLYGPPGSGKSSLIAAMAN 250 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~ 250 (530)
.-+.|.||.|+|||||.+++..
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 3478999999999999999964
No 398
>PRK01184 hypothetical protein; Provisional
Probab=96.55 E-value=0.0021 Score=60.65 Aligned_cols=29 Identities=28% Similarity=0.300 Sum_probs=24.9
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
-++|.||||+||||+++ ++.++++.+++.
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 46889999999999876 889999887665
No 399
>PF13479 AAA_24: AAA domain
Probab=96.53 E-value=0.0018 Score=63.09 Aligned_cols=62 Identities=34% Similarity=0.518 Sum_probs=39.9
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCcEEEEecC-------------ccCChHHHHHHHHhc----CCCeEEEEcCccchh
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCYDVYDLELT-------------KVTDNSELRALLLQT----TNRSIIVIEDIDCSV 292 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~-------------~~~~~~~L~~l~~~~----~~~sII~IDeID~~~ 292 (530)
-+|||||||+|||+++..+-+-+ +++++-. .+.+-.++.+.+... ..=..||||-|+.+.
T Consensus 5 ~~lIyG~~G~GKTt~a~~~~k~l---~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis~~~ 81 (213)
T PF13479_consen 5 KILIYGPPGSGKTTLAASLPKPL---FIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSISWLE 81 (213)
T ss_pred EEEEECCCCCCHHHHHHhCCCeE---EEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHHHHH
Confidence 58999999999999999883322 2233222 112344566655332 345699999999875
Q ss_pred hh
Q 009640 293 DL 294 (530)
Q Consensus 293 ~~ 294 (530)
.+
T Consensus 82 ~~ 83 (213)
T PF13479_consen 82 DM 83 (213)
T ss_pred HH
Confidence 43
No 400
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.53 E-value=0.005 Score=57.14 Aligned_cols=64 Identities=25% Similarity=0.444 Sum_probs=40.0
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcC---------------CcEEEEe----cCc--cC-ChH---HHHHHHHhcC--CCe
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLC---------------YDVYDLE----LTK--VT-DNS---ELRALLLQTT--NRS 281 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~---------------~~i~~l~----l~~--~~-~~~---~L~~l~~~~~--~~s 281 (530)
+-.++.||.|+|||+++++++-.+. ..+-..+ ... +. ... .+...+...+ .|+
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~lS~G~~~~~~la~~L~~~~~~~~~ 101 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAELIFTRLQLSGGEKELSALALILALASLKPRP 101 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEEehheeeccccHHHHHHHHHHHHhcCCCCCC
Confidence 4788999999999999999865442 2222222 111 11 122 2344454443 899
Q ss_pred EEEEcCccchh
Q 009640 282 IIVIEDIDCSV 292 (530)
Q Consensus 282 II~IDeID~~~ 292 (530)
+++|||+..-+
T Consensus 102 llllDEp~~gl 112 (162)
T cd03227 102 LYILDEIDRGL 112 (162)
T ss_pred EEEEeCCCCCC
Confidence 99999998754
No 401
>PRK10436 hypothetical protein; Provisional
Probab=96.52 E-value=0.0091 Score=64.79 Aligned_cols=85 Identities=24% Similarity=0.409 Sum_probs=53.9
Q ss_pred CCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCce-EEEECCCCCChhHHHHHHHHHcC---CcEEEEe------
Q 009640 191 STFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRG-YLLYGPPGSGKSSLIAAMANYLC---YDVYDLE------ 260 (530)
Q Consensus 191 ~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG-~LL~GPPGTGKTsLa~AiA~~l~---~~i~~l~------ 260 (530)
.+++++++.+...+.+.+.+ .. +.| +|+.||+|+||||++.|+-++++ .+++.++
T Consensus 195 ~~L~~LG~~~~~~~~l~~~~----~~-----------~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~~ 259 (462)
T PRK10436 195 LDLETLGMTPAQLAQFRQAL----QQ-----------PQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIP 259 (462)
T ss_pred CCHHHcCcCHHHHHHHHHHH----Hh-----------cCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCcccc
Confidence 47888888777655554433 11 345 67889999999999988877774 3455443
Q ss_pred cCcc-----C--ChHHHHHHHHhc--CCCeEEEEcCccc
Q 009640 261 LTKV-----T--DNSELRALLLQT--TNRSIIVIEDIDC 290 (530)
Q Consensus 261 l~~~-----~--~~~~L~~l~~~~--~~~sII~IDeID~ 290 (530)
+..+ . ........+..+ ..|.||+|.||--
T Consensus 260 l~gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIRD 298 (462)
T PRK10436 260 LAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIRD 298 (462)
T ss_pred CCCcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCCCC
Confidence 1111 1 111244444443 6899999999863
No 402
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.52 E-value=0.005 Score=59.89 Aligned_cols=27 Identities=33% Similarity=0.587 Sum_probs=23.1
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCCc
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCYD 255 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~~ 255 (530)
-..|+.|||||||||+.+-||.-+...
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g 164 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDG 164 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhcc
Confidence 467899999999999999999987443
No 403
>PRK14526 adenylate kinase; Provisional
Probab=96.51 E-value=0.0025 Score=62.04 Aligned_cols=28 Identities=36% Similarity=0.678 Sum_probs=25.2
Q ss_pred EEEECCCCCChhHHHHHHHHHcCCcEEE
Q 009640 231 YLLYGPPGSGKSSLIAAMANYLCYDVYD 258 (530)
Q Consensus 231 ~LL~GPPGTGKTsLa~AiA~~l~~~i~~ 258 (530)
++|.||||+||||+++.+|..+++..++
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~~is 30 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYYHIS 30 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceee
Confidence 7899999999999999999999876654
No 404
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.51 E-value=0.0097 Score=58.39 Aligned_cols=62 Identities=27% Similarity=0.400 Sum_probs=41.2
Q ss_pred ceEEEECCCCCChhHHHHHHHH-Hc----CCc---------EEEEecCccC--------------ChHHHHHHHHhcCCC
Q 009640 229 RGYLLYGPPGSGKSSLIAAMAN-YL----CYD---------VYDLELTKVT--------------DNSELRALLLQTTNR 280 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~-~l----~~~---------i~~l~l~~~~--------------~~~~L~~l~~~~~~~ 280 (530)
+-++|.||.|+|||++.+.++. .+ |.. +++-=.+.+. .-.++..++..+..+
T Consensus 32 ~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~~~ 111 (222)
T cd03287 32 YCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFMVELSETSHILSNCTSR 111 (222)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccccchHHHHHHHHHHHHHhCCCC
Confidence 4689999999999999999987 22 211 1100011110 123466667788899
Q ss_pred eEEEEcCccc
Q 009640 281 SIIVIEDIDC 290 (530)
Q Consensus 281 sII~IDeID~ 290 (530)
++++|||+..
T Consensus 112 sLvllDE~~~ 121 (222)
T cd03287 112 SLVILDELGR 121 (222)
T ss_pred eEEEEccCCC
Confidence 9999999975
No 405
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.50 E-value=0.0026 Score=60.28 Aligned_cols=29 Identities=41% Similarity=0.715 Sum_probs=24.1
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCcEEEEe
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCYDVYDLE 260 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~ 260 (530)
-+++.||||+||||+|+.||+.++ +..++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~--i~hls 30 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG--LPHLD 30 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC--CcEEc
Confidence 478999999999999999999954 44444
No 406
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=96.50 E-value=0.013 Score=65.32 Aligned_cols=85 Identities=26% Similarity=0.376 Sum_probs=53.1
Q ss_pred CCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCce-EEEECCCCCChhHHHHHHHHHcC---CcEEEEe------
Q 009640 191 STFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRG-YLLYGPPGSGKSSLIAAMANYLC---YDVYDLE------ 260 (530)
Q Consensus 191 ~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG-~LL~GPPGTGKTsLa~AiA~~l~---~~i~~l~------ 260 (530)
.+++++++.++..+.+.+.+. . +.| +|+.||+|+||||+..++.++++ .+++.++
T Consensus 293 ~~l~~lg~~~~~~~~l~~~~~----~-----------~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~~ 357 (564)
T TIGR02538 293 LDIDKLGFEPDQKALFLEAIH----K-----------PQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEIN 357 (564)
T ss_pred CCHHHcCCCHHHHHHHHHHHH----h-----------cCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCceec
Confidence 467888887776555544332 1 345 67899999999999999888874 3344432
Q ss_pred cCcc-----C--ChHHHHHHHHhc--CCCeEEEEcCccc
Q 009640 261 LTKV-----T--DNSELRALLLQT--TNRSIIVIEDIDC 290 (530)
Q Consensus 261 l~~~-----~--~~~~L~~l~~~~--~~~sII~IDeID~ 290 (530)
+..+ . ........+..+ ..|.||+|.||-.
T Consensus 358 ~~~~~q~~v~~~~g~~~~~~l~~~LR~dPDvI~vGEiRd 396 (564)
T TIGR02538 358 LPGINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIRD 396 (564)
T ss_pred CCCceEEEeccccCCCHHHHHHHHhccCCCEEEeCCCCC
Confidence 1111 0 011233444433 6899999999863
No 407
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=96.49 E-value=0.025 Score=58.41 Aligned_cols=96 Identities=19% Similarity=0.228 Sum_probs=65.5
Q ss_pred cCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEec
Q 009640 185 VPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLEL 261 (530)
Q Consensus 185 ~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l 261 (530)
+...+...|+.+++....-+.+++.-..+.-- --.+|+.|..||||-.+|+|.-... ..+|.-+++
T Consensus 195 ~~~~~~~~F~~~v~~S~~mk~~v~qA~k~Aml-----------DAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNC 263 (511)
T COG3283 195 VAAQDVSGFEQIVAVSPKMKHVVEQAQKLAML-----------DAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNC 263 (511)
T ss_pred cccccccchHHHhhccHHHHHHHHHHHHhhcc-----------CCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeec
Confidence 45556778999988776655555544333221 2468999999999999999865544 678999999
Q ss_pred CccCChHHHHHHHHhc------------CCCeEEEEcCccch
Q 009640 262 TKVTDNSELRALLLQT------------TNRSIIVIEDIDCS 291 (530)
Q Consensus 262 ~~~~~~~~L~~l~~~~------------~~~sII~IDeID~~ 291 (530)
..+-.+..-..+|-.+ .+..-+|+|||-.+
T Consensus 264 A~lPe~~aEsElFG~apg~~gk~GffE~AngGTVlLDeIgEm 305 (511)
T COG3283 264 ASLPEDAAESELFGHAPGDEGKKGFFEQANGGTVLLDEIGEM 305 (511)
T ss_pred CCCchhHhHHHHhcCCCCCCCccchhhhccCCeEEeehhhhc
Confidence 8875544444454433 23456788988765
No 408
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.48 E-value=0.012 Score=52.26 Aligned_cols=63 Identities=29% Similarity=0.353 Sum_probs=44.0
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCC--------------------cEEEEecCccCChHHHHHH--HHhcCCCeEEEEc
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCY--------------------DVYDLELTKVTDNSELRAL--LLQTTNRSIIVIE 286 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~--------------------~i~~l~l~~~~~~~~L~~l--~~~~~~~sII~ID 286 (530)
.-++|+|+=|+|||++++++|..+|. ++|.+++-.+.+..++-.+ +......+|++||
T Consensus 16 ~vi~L~GdLGaGKTtf~r~l~~~lg~~~~V~SPTF~l~~~Y~~~~~~l~H~DLYRl~~~~e~~~~g~~e~~~~~~i~~IE 95 (123)
T PF02367_consen 16 DVILLSGDLGAGKTTFVRGLARALGIDEEVTSPTFSLVNEYEGGNIPLYHFDLYRLEDPEELEDLGLEEYLFEDGICVIE 95 (123)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTT--S----TTTTSEEEEEETTEEEEEEE-TT-SSTHHHHHCTTTTCSSSSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCCCCcCCCCeEEEEEecCCCceEEEeeccccCCHHHHHHCCchhhhCCCCEEEEE
Confidence 45899999999999999999999964 3344455555555554443 2334678999998
Q ss_pred Cccch
Q 009640 287 DIDCS 291 (530)
Q Consensus 287 eID~~ 291 (530)
=-+.+
T Consensus 96 W~e~~ 100 (123)
T PF02367_consen 96 WPERL 100 (123)
T ss_dssp SGGGG
T ss_pred Ccccc
Confidence 66665
No 409
>PRK10646 ADP-binding protein; Provisional
Probab=96.48 E-value=0.019 Score=52.89 Aligned_cols=62 Identities=26% Similarity=0.383 Sum_probs=43.1
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCC--------------------cEEEEecCccCChHHHHHH-HHhc-CCCeEEEEcC
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCY--------------------DVYDLELTKVTDNSELRAL-LLQT-TNRSIIVIED 287 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~--------------------~i~~l~l~~~~~~~~L~~l-~~~~-~~~sII~IDe 287 (530)
-++|.|+=|+|||++++++|+.+|. ++|.+++-.+.+..++..+ |.+. ....|++||=
T Consensus 30 vi~L~GdLGaGKTtf~rgl~~~Lg~~~~V~SPTFtlv~~Y~~~~~~l~H~DlYRL~~~~el~~lG~~e~~~~~~i~~IEW 109 (153)
T PRK10646 30 VIYLYGDLGAGKTTFSRGFLQALGHQGNVKSPTYTLVEPYTLDNLMVYHFDLYRLADPEELEFMGIRDYFANDAICLVEW 109 (153)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCCCCCCCCEeeEEEeeCCCCCEEEEeeccCCCHHHHHHcchHHhhcCCCEEEEEC
Confidence 4899999999999999999999974 2344455455555555444 3333 4568888886
Q ss_pred ccch
Q 009640 288 IDCS 291 (530)
Q Consensus 288 ID~~ 291 (530)
.|.+
T Consensus 110 ~e~~ 113 (153)
T PRK10646 110 PQQG 113 (153)
T ss_pred Ccch
Confidence 5543
No 410
>PLN02199 shikimate kinase
Probab=96.47 E-value=0.0053 Score=62.35 Aligned_cols=33 Identities=33% Similarity=0.524 Sum_probs=30.7
Q ss_pred CceEEEECCCCCChhHHHHHHHHHcCCcEEEEe
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLE 260 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~ 260 (530)
.+.++|.|++|+|||++++.+|+.+++++++.+
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 358999999999999999999999999999975
No 411
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.017 Score=66.53 Aligned_cols=127 Identities=20% Similarity=0.278 Sum_probs=80.8
Q ss_pred CceEEEECCCCCChhHHHHHHHHHc----------CCcEEEEecCccC--------ChHHHHHHHHh---cCCCeEEEEc
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYL----------CYDVYDLELTKVT--------DNSELRALLLQ---TTNRSIIVIE 286 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l----------~~~i~~l~l~~~~--------~~~~L~~l~~~---~~~~sII~ID 286 (530)
+++-+|.|.||.|||.++.-+|+.. +..++.+++..+. -+..+..++.. .....||+||
T Consensus 208 k~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfig 287 (898)
T KOG1051|consen 208 KNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLG 287 (898)
T ss_pred CCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEec
Confidence 3677999999999999999999866 3455666655432 13456666664 3577899999
Q ss_pred CccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEE
Q 009640 287 DIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIV 366 (530)
Q Consensus 287 eID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI 366 (530)
|++.+.+... .....-...+|..+-+ .++.-+|
T Consensus 288 elh~lvg~g~------------------------------------------~~~~~d~~nlLkp~L~-----rg~l~~I 320 (898)
T KOG1051|consen 288 ELHWLVGSGS------------------------------------------NYGAIDAANLLKPLLA-----RGGLWCI 320 (898)
T ss_pred ceeeeecCCC------------------------------------------cchHHHHHHhhHHHHh-----cCCeEEE
Confidence 9999853110 0112223334433211 2336688
Q ss_pred EEeCCCC-----CCChhhhcCCceeEEEEeCCCCHHHHHHHHH
Q 009640 367 FTTNHRD-----SVDPALIRCGRMDVHVSLGTCGPHAFKVLAK 404 (530)
Q Consensus 367 ~TTN~~~-----~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~ 404 (530)
+||..-+ .=||||-| ||+. +.++.|+.+.-..|+.
T Consensus 321 GatT~e~Y~k~iekdPalEr--rw~l-~~v~~pS~~~~~~iL~ 360 (898)
T KOG1051|consen 321 GATTLETYRKCIEKDPALER--RWQL-VLVPIPSVENLSLILP 360 (898)
T ss_pred ecccHHHHHHHHhhCcchhh--Ccce-eEeccCcccchhhhhh
Confidence 8665433 34999999 9987 5688888765444443
No 412
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.45 E-value=0.0069 Score=60.68 Aligned_cols=51 Identities=22% Similarity=0.194 Sum_probs=38.7
Q ss_pred cCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecCccCChHHHHHHHHh
Q 009640 224 GRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELTKVTDNSELRALLLQ 276 (530)
Q Consensus 224 g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~~~~~~~~L~~l~~~ 276 (530)
|+|..+-+|++|+||||||+++...+... |.+++.++... +..++.+.+.+
T Consensus 19 G~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e--~~~~l~~~~~~ 72 (260)
T COG0467 19 GLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEE--SPEELLENARS 72 (260)
T ss_pred CCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecC--CHHHHHHHHHH
Confidence 57777889999999999999998887655 66788877665 35556555543
No 413
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.45 E-value=0.0064 Score=57.52 Aligned_cols=64 Identities=16% Similarity=0.237 Sum_probs=39.6
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCCc---EE----EEe--cCcc-CChHHHHHH-HHh--cCCCeEEEEcCccchh
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCYD---VY----DLE--LTKV-TDNSELRAL-LLQ--TTNRSIIVIEDIDCSV 292 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~~---i~----~l~--l~~~-~~~~~L~~l-~~~--~~~~sII~IDeID~~~ 292 (530)
.-+.|.||.|+|||||++.|+..+..+ +. .+. .... .+..+-+++ +.. +..|.++++||--.-+
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts~L 102 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYL 102 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccC
Confidence 357899999999999999999976321 11 111 0110 122222332 222 2689999999988755
No 414
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.44 E-value=0.0036 Score=67.41 Aligned_cols=86 Identities=23% Similarity=0.325 Sum_probs=54.3
Q ss_pred CCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCce-EEEECCCCCChhHHHHHHHHHcCCcEE---EEe-----
Q 009640 190 PSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRG-YLLYGPPGSGKSSLIAAMANYLCYDVY---DLE----- 260 (530)
Q Consensus 190 ~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG-~LL~GPPGTGKTsLa~AiA~~l~~~i~---~l~----- 260 (530)
.-+|+++++.+...+.+...+.. +.| +|+.||.|+||||...++-++++.+.. .++
T Consensus 234 ~l~l~~Lg~~~~~~~~~~~~~~~---------------p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~ 298 (500)
T COG2804 234 ILDLEKLGMSPFQLARLLRLLNR---------------PQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEY 298 (500)
T ss_pred cCCHHHhCCCHHHHHHHHHHHhC---------------CCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeee
Confidence 34678888888777666554421 457 556799999999999999999865443 332
Q ss_pred -cCcc---CChH----HHHHHHHhc--CCCeEEEEcCccc
Q 009640 261 -LTKV---TDNS----ELRALLLQT--TNRSIIVIEDIDC 290 (530)
Q Consensus 261 -l~~~---~~~~----~L~~l~~~~--~~~sII~IDeID~ 290 (530)
+..+ .-|. ...+.+... ..|.||.+.||--
T Consensus 299 ~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIRD 338 (500)
T COG2804 299 QLPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIRD 338 (500)
T ss_pred ecCCcceeecccccCCCHHHHHHHHhccCCCeEEEeccCC
Confidence 1111 1111 122222222 6799999999963
No 415
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.43 E-value=0.0028 Score=64.70 Aligned_cols=30 Identities=30% Similarity=0.238 Sum_probs=25.2
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc-CCcEEE
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYL-CYDVYD 258 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l-~~~i~~ 258 (530)
.-++|.|||||||||+++.++..+ +..+++
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~~~l~ 33 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKAVNVN 33 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCEEEe
Confidence 357899999999999999999998 555444
No 416
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.42 E-value=0.013 Score=64.25 Aligned_cols=86 Identities=24% Similarity=0.364 Sum_probs=53.8
Q ss_pred CCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCce-EEEECCCCCChhHHHHHHHHHcC---CcEEEEec----
Q 009640 190 PSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRG-YLLYGPPGSGKSSLIAAMANYLC---YDVYDLEL---- 261 (530)
Q Consensus 190 ~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG-~LL~GPPGTGKTsLa~AiA~~l~---~~i~~l~l---- 261 (530)
+.++++++..++..+.+...+ .. +.| +|+.||+|+||||++.++.+++. .+++.++-
T Consensus 218 ~~~l~~Lg~~~~~~~~l~~~~----~~-----------~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~ 282 (486)
T TIGR02533 218 RLDLETLGMSPELLSRFERLI----RR-----------PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEY 282 (486)
T ss_pred CCCHHHcCCCHHHHHHHHHHH----hc-----------CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeee
Confidence 457788887777655544432 22 356 68899999999999999888774 34554431
Q ss_pred --Ccc-----CC--hHHHHHHHHhc--CCCeEEEEcCccc
Q 009640 262 --TKV-----TD--NSELRALLLQT--TNRSIIVIEDIDC 290 (530)
Q Consensus 262 --~~~-----~~--~~~L~~l~~~~--~~~sII~IDeID~ 290 (530)
..+ .. .......+..+ ..|.||+|.||-.
T Consensus 283 ~~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiRd 322 (486)
T TIGR02533 283 QIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIRD 322 (486)
T ss_pred ecCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCCC
Confidence 111 00 01223333333 6899999999864
No 417
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.41 E-value=0.0038 Score=57.20 Aligned_cols=29 Identities=41% Similarity=0.517 Sum_probs=24.7
Q ss_pred EEEECCCCCChhHHHHHHHHHc---CCcEEEE
Q 009640 231 YLLYGPPGSGKSSLIAAMANYL---CYDVYDL 259 (530)
Q Consensus 231 ~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l 259 (530)
+++.|+||+|||++++.++..+ +.+.+.+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i 33 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVL 33 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 5789999999999999999998 5555554
No 418
>PRK06696 uridine kinase; Validated
Probab=96.37 E-value=0.01 Score=58.10 Aligned_cols=38 Identities=16% Similarity=0.207 Sum_probs=31.0
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecCccCC
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELTKVTD 266 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~~~~~ 266 (530)
.-+.+.|+||+||||+++.||..+ +..++.+++.++..
T Consensus 23 ~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~ 63 (223)
T PRK06696 23 LRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHN 63 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccC
Confidence 457789999999999999999999 66777776666543
No 419
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=96.37 E-value=0.0065 Score=63.46 Aligned_cols=61 Identities=25% Similarity=0.438 Sum_probs=41.8
Q ss_pred cCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccCChHHHHHHHHhcCCCeEEEEcCccc
Q 009640 224 GRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVTDNSELRALLLQTTNRSIIVIEDIDC 290 (530)
Q Consensus 224 g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~~~~~L~~l~~~~~~~sII~IDeID~ 290 (530)
|+|.+..+++||||.||||+++-.+-+.++-.++.. .+ +.+ .=.|.....--|-+|||+-.
T Consensus 258 g~PKKnClvi~GPPdTGKS~F~~SLi~Fl~GkViSf--~N--s~S--hFWLqPL~d~Ki~llDDAT~ 318 (432)
T PF00519_consen 258 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISF--VN--SKS--HFWLQPLADAKIALLDDATY 318 (432)
T ss_dssp TBTTSSEEEEESSCCCSHHHHHHHHHHHHTSEEE-G--GG--TTS--CGGGGGGCT-SSEEEEEE-H
T ss_pred CCCcccEEEEECCCCCchhHHHHHHHHHhCCEEEEe--cC--CCC--cccccchhcCcEEEEcCCcc
Confidence 678899999999999999999999999998876653 11 111 11233334446778888753
No 420
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.36 E-value=0.0092 Score=61.47 Aligned_cols=26 Identities=19% Similarity=0.553 Sum_probs=23.6
Q ss_pred CceEEEECCCCCChhHHHHHHHHHcC
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYLC 253 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l~ 253 (530)
...+++.||+|+||||++++++.++.
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~ 169 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIP 169 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCC
Confidence 46899999999999999999998873
No 421
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.34 E-value=0.017 Score=63.66 Aligned_cols=39 Identities=18% Similarity=0.086 Sum_probs=29.2
Q ss_pred cCCCCceEEEECCCCCChhHHHHHHHHHc----CCcEEEEecC
Q 009640 224 GRAWKRGYLLYGPPGSGKSSLIAAMANYL----CYDVYDLELT 262 (530)
Q Consensus 224 g~~~~rG~LL~GPPGTGKTsLa~AiA~~l----~~~i~~l~l~ 262 (530)
|+|..+-+|++|+||||||+|+..++... |..++.+++.
T Consensus 27 G~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~e 69 (509)
T PRK09302 27 GLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFE 69 (509)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEcc
Confidence 56777789999999999999998776432 4556555443
No 422
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.31 E-value=0.0096 Score=62.28 Aligned_cols=61 Identities=28% Similarity=0.453 Sum_probs=39.8
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcC----CcEEEEecC---------------ccC-ChHHHHHHHHhc--CCCeEEEEc
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLC----YDVYDLELT---------------KVT-DNSELRALLLQT--TNRSIIVIE 286 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~----~~i~~l~l~---------------~~~-~~~~L~~l~~~~--~~~sII~ID 286 (530)
.-+|+.||+|+||||+++++.+++. ..++.++-. ++. ....+.+.+..+ ..|.+|+++
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~vg 202 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILIG 202 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEEe
Confidence 3578999999999999999998774 234433210 000 111244444443 689999999
Q ss_pred Ccc
Q 009640 287 DID 289 (530)
Q Consensus 287 eID 289 (530)
|+-
T Consensus 203 Eir 205 (343)
T TIGR01420 203 EMR 205 (343)
T ss_pred CCC
Confidence 995
No 423
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.31 E-value=0.0045 Score=60.51 Aligned_cols=39 Identities=28% Similarity=0.334 Sum_probs=29.4
Q ss_pred cCCCCceEEEECCCCCChhHHHHHHHHHc----CCcEEEEecC
Q 009640 224 GRAWKRGYLLYGPPGSGKSSLIAAMANYL----CYDVYDLELT 262 (530)
Q Consensus 224 g~~~~rG~LL~GPPGTGKTsLa~AiA~~l----~~~i~~l~l~ 262 (530)
|+|...-+|+.||||||||+|+..++... |..++.++..
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~e 57 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFE 57 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESS
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEec
Confidence 67777889999999999999998766433 7777777654
No 424
>PF06431 Polyoma_lg_T_C: Polyomavirus large T antigen C-terminus; InterPro: IPR010932 The group of polyomaviruses is formed by the homonymous murine virus (Py) as well as other representative members such as the simian virus 40 (SV40) and the human BK and JC viruses []. Their large T antigen (T-ag) protein binds to and activates DNA replication from the origin of DNA replication (ori). Insofar as is known, the T-ag binds to the origin first as a monomer to its pentanucleotide recognition element. The monomers are then thought to assemble into hexamers and double hexamers, which constitute the form that is active in initiation of DNA replication. When bound to the ori, T-ag double hexamers encircle DNA []. T-ag is a multidomain protein that contains an N-terminal J domain, which mediates protein interactions (see PDOC00553 from PROSITEDOC, IPR001623 from INTERPRO), a central origin-binding domain (OBD), and a C-terminal superfamily 3 helicase domain (see PDOC51206 from PROSITEDOC, IPR010932 from INTERPRO) []. This entry represents the helicase domain of LTag, which assembles into a hexameric structure containing a positively charged central channel that can bind both single- and double-stranded DNA []. ATP binding and hydrolysis trigger large conformational changes which are thought to be coupled to the melting of origin DNA and the unwinding of duplex DNA []. These conformational changes cause the angles and orientations between regions of a monomer to alter, creating what was described as an "iris"-like motion in the hexamer. In addition to this, six beta hairpins on the channel surface move longitudinally along the central channel, possibly serving as a motor for pulling DNA into the LTag double hexamer for unwinding.; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 2H1L_H 1SVO_A 1SVM_E 1SVL_B 1N25_A 4E2I_K.
Probab=96.30 E-value=0.0067 Score=62.75 Aligned_cols=148 Identities=21% Similarity=0.227 Sum_probs=77.3
Q ss_pred hhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccCChHHHHHHHHhcCCC
Q 009640 201 QLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVTDNSELRALLLQTTNR 280 (530)
Q Consensus 201 ~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~~~~~L~~l~~~~~~~ 280 (530)
...+.|.+.|.....+ +|.+|.+||-||-.|||||||+|+-+.++-....++... +.|.--|--+-..
T Consensus 136 ~~~~~i~~iL~~lv~N--------~PKkRy~lFkGPvNsGKTTlAAAlLdL~gG~~LNvN~p~----dkl~FELG~AiDQ 203 (417)
T PF06431_consen 136 NFDDVILEILKCLVEN--------IPKKRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPP----DKLNFELGCAIDQ 203 (417)
T ss_dssp THHHHHHHHHHHHHHT--------BTTB-EEEEE-STTSSHHHHHHHHHHHH-EEEE-TSS-T----TTHHHHHCCCTT-
T ss_pred chHHHHHHHHHHHhcC--------CCcceeEEEecCcCCchHHHHHHHHHhcCCceeecCCCh----hhcchhhheeece
Confidence 3344555555555543 466899999999999999999999999987766665543 2333334445566
Q ss_pred eEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccC--
Q 009640 281 SIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSC-- 358 (530)
Q Consensus 281 sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~-- 358 (530)
-.++|||+---. .. .+ . =..+..-..|..|-.-|||--.-
T Consensus 204 fmVvFEDVKGq~------~~----------~~-~---------------------Lp~G~G~~NLDNLRD~LDG~V~VNL 245 (417)
T PF06431_consen 204 FMVVFEDVKGQP------SD----------NK-D---------------------LPPGQGMNNLDNLRDYLDGAVKVNL 245 (417)
T ss_dssp SEEEEEEE--SS------TT----------TT-T-------------------------SHHHHHHTTHHHHH-SS-EEE
T ss_pred EEEEEEecCCCc------CC----------CC-C---------------------CCCCCCcccchhhhhhccCceeech
Confidence 788888875210 00 00 0 00111223455566667765321
Q ss_pred ---CCCCe-----EEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHH
Q 009640 359 ---CSEEK-----IIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVL 402 (530)
Q Consensus 359 ---~~~~~-----ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i 402 (530)
....+ --|.|.|. ..||..+.- ||-+.+.|. |...-++.|
T Consensus 246 ErKH~NK~sQiFPPgIvTmNe-Y~iP~Tv~v--Rf~~~~~F~-~k~~l~~~L 293 (417)
T PF06431_consen 246 ERKHQNKRSQIFPPGIVTMNE-YKIPQTVKV--RFCKVLDFR-PKPNLRKSL 293 (417)
T ss_dssp ECSSSEEEEE----EEEEESS--B--HHHHT--TEEEEEE-----HHHHHHH
T ss_pred hhhhcccccccCCCceEeecc-ccCCcceee--eeEeeEecc-ccHHHHHHH
Confidence 01111 24678886 578888888 999999886 344444443
No 425
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.29 E-value=0.0042 Score=61.80 Aligned_cols=30 Identities=40% Similarity=0.525 Sum_probs=25.3
Q ss_pred EEEECCCCCChhHHHHHHHHHc---CCcEEEEe
Q 009640 231 YLLYGPPGSGKSSLIAAMANYL---CYDVYDLE 260 (530)
Q Consensus 231 ~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~ 260 (530)
++|.|+||+||||+++++|..+ +.+++.++
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~ 34 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILG 34 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEc
Confidence 6899999999999999999988 45665554
No 426
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=96.29 E-value=0.0037 Score=57.13 Aligned_cols=34 Identities=29% Similarity=0.362 Sum_probs=30.0
Q ss_pred CCCceEEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 226 AWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 226 ~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
|.+-.+++.|+.||||||++++++.+|+.+|++-
T Consensus 10 ~~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dg 43 (191)
T KOG3354|consen 10 PFKYVIVVMGVSGSGKSTIGKALSEELGLKFIDG 43 (191)
T ss_pred CCceeEEEEecCCCChhhHHHHHHHHhCCccccc
Confidence 4455788899999999999999999999998875
No 427
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.29 E-value=0.18 Score=50.09 Aligned_cols=56 Identities=16% Similarity=0.128 Sum_probs=36.1
Q ss_pred ceeEEEEeCCCCHHHHHHHHHHhhCCcCcc-ch--HHHHHHHHHhCCCCCHHHHHHHHHH
Q 009640 384 RMDVHVSLGTCGPHAFKVLAKNYLGIESHH-AL--FDVVESCIRAGGALTPAQIGEVLLR 440 (530)
Q Consensus 384 R~d~~I~~~~p~~~~r~~i~~~~l~~~~~~-~~--~~~i~~l~~~~~~~spadi~~~l~~ 440 (530)
|++..|++++.+.++-...++..|+....+ .+ .+.+..+...+.+ .|.-|.+++..
T Consensus 190 R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~ 248 (269)
T COG3267 190 RIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATL 248 (269)
T ss_pred eEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHH
Confidence 899999999999998888888777643211 12 2233333333344 78788877754
No 428
>PHA00350 putative assembly protein
Probab=96.28 E-value=0.016 Score=61.43 Aligned_cols=62 Identities=18% Similarity=0.188 Sum_probs=37.4
Q ss_pred EEEECCCCCChhHHHHH--H--HHHcCCcEEEEecCccCCh--------------------------HHHHHHHHhcCCC
Q 009640 231 YLLYGPPGSGKSSLIAA--M--ANYLCYDVYDLELTKVTDN--------------------------SELRALLLQTTNR 280 (530)
Q Consensus 231 ~LL~GPPGTGKTsLa~A--i--A~~l~~~i~~l~l~~~~~~--------------------------~~L~~l~~~~~~~ 280 (530)
+|++|+||+|||..+-. | |-..|..++. ++..+.-+ ..+...+.-.+..
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~GR~V~T-NI~Gl~le~i~~~~~~~p~~~~li~i~~~~~~~~~~~~~~~~w~p~g 82 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKDGRKVIT-NIPGLNLDVFEKVFGEFPSTARLIRIVDRNLEGFESMNRPFSWRPRG 82 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHCCCEEEE-CCCCCCHHHHHhhcccCcccceeEEeccccccchhhhccccccCCCC
Confidence 68999999999998775 3 2233655542 33221100 0111122224577
Q ss_pred eEEEEcCccchhh
Q 009640 281 SIIVIEDIDCSVD 293 (530)
Q Consensus 281 sII~IDeID~~~~ 293 (530)
++|||||+..+++
T Consensus 83 aLIViDEaq~~~p 95 (399)
T PHA00350 83 ALYVIDEAQMIFP 95 (399)
T ss_pred CEEEEECchhhcC
Confidence 9999999999975
No 429
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.28 E-value=0.014 Score=57.04 Aligned_cols=62 Identities=24% Similarity=0.390 Sum_probs=41.2
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc-----CC---------cEEEEecCccC--------------ChHHHHHHHHhcCCC
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYL-----CY---------DVYDLELTKVT--------------DNSELRALLLQTTNR 280 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l-----~~---------~i~~l~l~~~~--------------~~~~L~~l~~~~~~~ 280 (530)
+-++|.||.|.|||++.+.++... |. .+++--.+.+. .-.++..++..+..|
T Consensus 31 ~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa~~~~i~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~~~ 110 (218)
T cd03286 31 RILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKSMRLSLVDRIFTRIGARDDIMKGESTFMVELSETANILRHATPD 110 (218)
T ss_pred cEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCccccEeccccEEEEecCcccccccCcchHHHHHHHHHHHHHhCCCC
Confidence 568999999999999998887642 21 11111111110 123456678888999
Q ss_pred eEEEEcCccc
Q 009640 281 SIIVIEDIDC 290 (530)
Q Consensus 281 sII~IDeID~ 290 (530)
++|+|||+-.
T Consensus 111 sLvLlDE~~~ 120 (218)
T cd03286 111 SLVILDELGR 120 (218)
T ss_pred eEEEEecccC
Confidence 9999999865
No 430
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.28 E-value=0.0036 Score=59.40 Aligned_cols=29 Identities=38% Similarity=0.453 Sum_probs=25.2
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCcEEE
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCYDVYD 258 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~~i~~ 258 (530)
-+.|.||+|+||||+++.||..++.+++.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~~~~~~~ 32 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQREQTQLLV 32 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCeEEE
Confidence 57899999999999999999988766544
No 431
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.28 E-value=0.028 Score=52.36 Aligned_cols=24 Identities=46% Similarity=0.725 Sum_probs=21.9
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l 252 (530)
.-+.|.||.|+|||||++.|+..+
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 458899999999999999999986
No 432
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.27 E-value=0.0099 Score=61.88 Aligned_cols=63 Identities=14% Similarity=0.253 Sum_probs=41.8
Q ss_pred CceEEEECCCCCChhHHHHHHHHHcCC--cEEEEe------cCcc--------------CChHHHHHHHHhc--CCCeEE
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYLCY--DVYDLE------LTKV--------------TDNSELRALLLQT--TNRSII 283 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l~~--~i~~l~------l~~~--------------~~~~~L~~l~~~~--~~~sII 283 (530)
+.++|+.||+|+||||+++|++.+... .++.++ +... ...-.+.+++..+ .+|.+|
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~I 239 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDRI 239 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCeE
Confidence 468999999999999999999998842 333331 1000 0011244555544 579999
Q ss_pred EEcCccc
Q 009640 284 VIEDIDC 290 (530)
Q Consensus 284 ~IDeID~ 290 (530)
++.|+-.
T Consensus 240 ivGEiR~ 246 (332)
T PRK13900 240 IVGELRG 246 (332)
T ss_pred EEEecCC
Confidence 9999863
No 433
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=96.27 E-value=0.017 Score=66.70 Aligned_cols=63 Identities=13% Similarity=0.309 Sum_probs=39.9
Q ss_pred ceEEEECCCCCChhHHHHHHHHH-----cCCc----------EEEEecCccCC--------------hHHHHHHHHhcCC
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANY-----LCYD----------VYDLELTKVTD--------------NSELRALLLQTTN 279 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~-----l~~~----------i~~l~l~~~~~--------------~~~L~~l~~~~~~ 279 (530)
+.++|.||.+.|||++.+.++-. +|.. +++--++.+.+ ...+..++..+..
T Consensus 328 ~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lStfS~~m~~~~~Il~~~~~ 407 (782)
T PRK00409 328 TVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKEIFADIGDEQSIEQSLSTFSGHMTNIVRILEKADK 407 (782)
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccceEEEecCCccchhhchhHHHHHHHHHHHHHHhCCc
Confidence 57899999999999999988643 2322 22111111111 1223444555678
Q ss_pred CeEEEEcCccch
Q 009640 280 RSIIVIEDIDCS 291 (530)
Q Consensus 280 ~sII~IDeID~~ 291 (530)
|++|+|||+-.-
T Consensus 408 ~sLvLlDE~~~G 419 (782)
T PRK00409 408 NSLVLFDELGAG 419 (782)
T ss_pred CcEEEecCCCCC
Confidence 999999999763
No 434
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.015 Score=55.06 Aligned_cols=33 Identities=27% Similarity=0.590 Sum_probs=25.0
Q ss_pred HhhhcCCCCce--EEEECCCCCChhHHHHHHHHHc
Q 009640 220 YHRVGRAWKRG--YLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 220 y~~~g~~~~rG--~LL~GPPGTGKTsLa~AiA~~l 252 (530)
|..+.+.+..| +.+.||.|+|||||.+.+|.-+
T Consensus 18 f~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl 52 (209)
T COG4133 18 FSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLL 52 (209)
T ss_pred ecceeEEEcCCCEEEEECCCCCcHHHHHHHHHccc
Confidence 33444444334 6788999999999999999987
No 435
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.25 E-value=0.0045 Score=59.56 Aligned_cols=28 Identities=29% Similarity=0.386 Sum_probs=24.9
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCCcE
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCYDV 256 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~~i 256 (530)
.-+++.|+||+||||+++.+|..++...
T Consensus 4 ~~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 4 TIHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 4688999999999999999999988654
No 436
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.24 E-value=0.0054 Score=61.56 Aligned_cols=39 Identities=18% Similarity=0.100 Sum_probs=30.8
Q ss_pred cCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecC
Q 009640 224 GRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELT 262 (530)
Q Consensus 224 g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~ 262 (530)
|+|...-+|++||||||||+|+..+|... +..+..+++.
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 67777789999999999999999876643 5666666654
No 437
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.19 E-value=0.027 Score=64.68 Aligned_cols=63 Identities=19% Similarity=0.257 Sum_probs=39.7
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc---C--CcEEEEecCcc----------CChHHHHHHHHhc------------CCCe
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYL---C--YDVYDLELTKV----------TDNSELRALLLQT------------TNRS 281 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l---~--~~i~~l~l~~~----------~~~~~L~~l~~~~------------~~~s 281 (530)
+-.+|.|+||||||++++++...+ + ..++-+-.+.- .....+.++|... ....
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~ 418 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCD 418 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCC
Confidence 467899999999999999987765 3 44554433321 0112244444321 2357
Q ss_pred EEEEcCccch
Q 009640 282 IIVIEDIDCS 291 (530)
Q Consensus 282 II~IDeID~~ 291 (530)
+|+|||+-.+
T Consensus 419 llIvDEaSMv 428 (720)
T TIGR01448 419 LLIVDESSMM 428 (720)
T ss_pred EEEEeccccC
Confidence 9999998765
No 438
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=96.18 E-value=0.015 Score=54.97 Aligned_cols=24 Identities=38% Similarity=0.524 Sum_probs=20.4
Q ss_pred eEEEECCCCCChhHHHHHHHHHcC
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLC 253 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~ 253 (530)
--.++||.|+|||++..||+--++
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~~ 47 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVLG 47 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 356899999999999999977663
No 439
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.18 E-value=0.021 Score=61.50 Aligned_cols=60 Identities=22% Similarity=0.222 Sum_probs=38.6
Q ss_pred hhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEec
Q 009640 201 QLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLEL 261 (530)
Q Consensus 201 ~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l 261 (530)
.+.+.+.+.+...+.......... ..+.-++|+||||+||||++..+|..+ +..+.-+..
T Consensus 69 ~~~~~v~~~L~~~l~~~~~~~~~~-~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~ 131 (437)
T PRK00771 69 HVIKIVYEELVKLLGEETEPLVLP-LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAA 131 (437)
T ss_pred HHHHHHHHHHHHHhCCCccccccC-CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecC
Confidence 445566666666654322111111 235678999999999999999999887 444544443
No 440
>PRK14529 adenylate kinase; Provisional
Probab=96.17 E-value=0.0035 Score=61.51 Aligned_cols=29 Identities=28% Similarity=0.397 Sum_probs=26.2
Q ss_pred EEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 231 YLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 231 ~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
++|.||||+||||+++.||..+++..++.
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~is~ 31 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHIES 31 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCccc
Confidence 78999999999999999999999887643
No 441
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=96.17 E-value=0.015 Score=60.74 Aligned_cols=24 Identities=33% Similarity=0.610 Sum_probs=20.4
Q ss_pred CCceEEEECCCCCChhHHHHHHHH
Q 009640 227 WKRGYLLYGPPGSGKSSLIAAMAN 250 (530)
Q Consensus 227 ~~rG~LL~GPPGTGKTsLa~AiA~ 250 (530)
.|+|++|||.-|||||+|.--.-.
T Consensus 113 ~PkGlYlYG~VGcGKTmLMDlFy~ 136 (467)
T KOG2383|consen 113 PPKGLYLYGSVGCGKTMLMDLFYD 136 (467)
T ss_pred CCceEEEecccCcchhHHHHHHhh
Confidence 379999999999999999866543
No 442
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=96.15 E-value=0.012 Score=57.47 Aligned_cols=62 Identities=26% Similarity=0.363 Sum_probs=39.4
Q ss_pred ceEEEECCCCCChhHHHHHHHH-----HcCCcE---------EEEecCccC-------Ch-------HHHHHHHHhcCCC
Q 009640 229 RGYLLYGPPGSGKSSLIAAMAN-----YLCYDV---------YDLELTKVT-------DN-------SELRALLLQTTNR 280 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~-----~l~~~i---------~~l~l~~~~-------~~-------~~L~~l~~~~~~~ 280 (530)
+-++|.||.|+|||++.+.+|. ..+..+ ++--.+.+. .. ..+..++..+..|
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~~~~~i~~~~~i~~~~~~~~~ls~g~s~f~~e~~~l~~~l~~~~~~ 110 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASKAEIGVVDRIFTRIGASDDLAGGRSTFMVEMVETANILNNATER 110 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHhccCCeeccccceecceeeEeccCCchhhhccCcchHHHHHHHHHHHHHhCCCC
Confidence 4678999999999999999874 222221 110011111 00 1355566677899
Q ss_pred eEEEEcCccc
Q 009640 281 SIIVIEDIDC 290 (530)
Q Consensus 281 sII~IDeID~ 290 (530)
++|+|||.-.
T Consensus 111 ~llllDEp~~ 120 (216)
T cd03284 111 SLVLLDEIGR 120 (216)
T ss_pred eEEEEecCCC
Confidence 9999999853
No 443
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.15 E-value=0.01 Score=67.07 Aligned_cols=35 Identities=26% Similarity=0.468 Sum_probs=27.1
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecCc
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELTK 263 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~~ 263 (530)
..+|++||||||||+++.++...+ +..+..+..+.
T Consensus 174 ~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a~sn 211 (637)
T TIGR00376 174 DLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTAPSN 211 (637)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCcH
Confidence 357899999999999999888765 66666665443
No 444
>PLN02674 adenylate kinase
Probab=96.15 E-value=0.0056 Score=60.83 Aligned_cols=31 Identities=29% Similarity=0.565 Sum_probs=26.9
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
..++|.||||+||||+++.||..+++..++.
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~~~~his~ 62 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEYCLCHLAT 62 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCcEEch
Confidence 4689999999999999999999998765543
No 445
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.14 E-value=0.012 Score=63.89 Aligned_cols=69 Identities=23% Similarity=0.239 Sum_probs=44.5
Q ss_pred cCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecCccC--------------------ChHHHHHHHHh--cC
Q 009640 224 GRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELTKVT--------------------DNSELRALLLQ--TT 278 (530)
Q Consensus 224 g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~~~~--------------------~~~~L~~l~~~--~~ 278 (530)
|++...-+||+|+||+|||+|+..+|..+ +.+++.++..+-. ...++..+... ..
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 56666679999999999999999987765 3455555432210 01112222222 25
Q ss_pred CCeEEEEcCccchh
Q 009640 279 NRSIIVIEDIDCSV 292 (530)
Q Consensus 279 ~~sII~IDeID~~~ 292 (530)
++.+||||.|-.+.
T Consensus 170 ~~~~vVIDSIq~l~ 183 (454)
T TIGR00416 170 NPQACVIDSIQTLY 183 (454)
T ss_pred CCcEEEEecchhhc
Confidence 78999999988763
No 446
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.12 E-value=0.008 Score=59.42 Aligned_cols=48 Identities=23% Similarity=0.221 Sum_probs=34.5
Q ss_pred cCCCCceEEEECCCCCChhHHHHHHHHH---cCCcEEEEecCccCChHHHHHH
Q 009640 224 GRAWKRGYLLYGPPGSGKSSLIAAMANY---LCYDVYDLELTKVTDNSELRAL 273 (530)
Q Consensus 224 g~~~~rG~LL~GPPGTGKTsLa~AiA~~---l~~~i~~l~l~~~~~~~~L~~l 273 (530)
|+|....+|++||||||||+|+..++.+ -|..++.+++.. +..++.+-
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC--CHHHHHHH
Confidence 6777788999999999999999876544 266777776543 33444443
No 447
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.09 E-value=0.01 Score=62.20 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=22.1
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l 252 (530)
.-+++.|.||||||.|+-.+|..+
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHh
Confidence 457899999999999999999998
No 448
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.08 E-value=0.005 Score=57.76 Aligned_cols=22 Identities=36% Similarity=0.779 Sum_probs=20.0
Q ss_pred EEEECCCCCChhHHHHHHHHHc
Q 009640 231 YLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 231 ~LL~GPPGTGKTsLa~AiA~~l 252 (530)
++|.|+||+||||+++.++.++
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 7899999999999999999988
No 449
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.07 E-value=0.024 Score=62.07 Aligned_cols=26 Identities=35% Similarity=0.509 Sum_probs=22.1
Q ss_pred CCceEEEECCCCCChhHHHHHHHHHc
Q 009640 227 WKRGYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 227 ~~rG~LL~GPPGTGKTsLa~AiA~~l 252 (530)
+..-+.|.||+|+||||++..||..+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 34568899999999999999998765
No 450
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=96.04 E-value=0.0063 Score=57.44 Aligned_cols=29 Identities=34% Similarity=0.391 Sum_probs=26.2
Q ss_pred EEEECCCCCChhHHHHHHHHHcCCcEEEEe
Q 009640 231 YLLYGPPGSGKSSLIAAMANYLCYDVYDLE 260 (530)
Q Consensus 231 ~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~ 260 (530)
+.|+|+||+||||+++.+++ +|+.+++.+
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~~D 30 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVIDAD 30 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEEecC
Confidence 57899999999999999999 898888765
No 451
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.04 E-value=0.068 Score=49.63 Aligned_cols=28 Identities=25% Similarity=0.260 Sum_probs=22.5
Q ss_pred EEEECCCCCChhHHHHHHHHHc---CCcEEE
Q 009640 231 YLLYGPPGSGKSSLIAAMANYL---CYDVYD 258 (530)
Q Consensus 231 ~LL~GPPGTGKTsLa~AiA~~l---~~~i~~ 258 (530)
+.+|+++|+||||+|.++|-.. |..+..
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~ 35 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRALGHGYRVGV 35 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 5689999999999999998765 555555
No 452
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.04 E-value=0.0099 Score=62.49 Aligned_cols=24 Identities=42% Similarity=0.563 Sum_probs=21.8
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l 252 (530)
.-+++.||+|+||||++++|++++
T Consensus 135 glilI~GpTGSGKTTtL~aLl~~i 158 (358)
T TIGR02524 135 GIVFITGATGSGKSTLLAAIIREL 158 (358)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 458889999999999999999887
No 453
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=96.02 E-value=0.0046 Score=60.36 Aligned_cols=22 Identities=41% Similarity=0.606 Sum_probs=20.0
Q ss_pred EEEECCCCCChhHHHHHHHHHc
Q 009640 231 YLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 231 ~LL~GPPGTGKTsLa~AiA~~l 252 (530)
++++|+||+|||++++.++...
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 4789999999999999999984
No 454
>PLN02459 probable adenylate kinase
Probab=96.00 E-value=0.008 Score=60.20 Aligned_cols=30 Identities=20% Similarity=0.412 Sum_probs=26.3
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
.++|.||||+||||+++.+|..+++..+..
T Consensus 31 ~ii~~G~PGsGK~T~a~~la~~~~~~~is~ 60 (261)
T PLN02459 31 NWVFLGCPGVGKGTYASRLSKLLGVPHIAT 60 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeC
Confidence 478899999999999999999998776654
No 455
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=95.99 E-value=0.014 Score=58.31 Aligned_cols=26 Identities=31% Similarity=0.579 Sum_probs=23.2
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCC
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCY 254 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~ 254 (530)
.-+++.||||+|||+|++.|++.+..
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccc
Confidence 35899999999999999999998865
No 456
>PRK12338 hypothetical protein; Provisional
Probab=95.99 E-value=0.0067 Score=62.46 Aligned_cols=29 Identities=24% Similarity=0.260 Sum_probs=25.7
Q ss_pred CceEEEECCCCCChhHHHHHHHHHcCCcE
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYLCYDV 256 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l~~~i 256 (530)
+.-+++.|+|||||||+++++|..++...
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l~~~~ 32 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTLNIKH 32 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHCCCeE
Confidence 35688999999999999999999998754
No 457
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=95.99 E-value=0.0068 Score=67.31 Aligned_cols=31 Identities=19% Similarity=0.289 Sum_probs=29.3
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCcEEEEe
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCYDVYDLE 260 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~ 260 (530)
-+.|.|+||+||||+.+.+|+.|+++++|++
T Consensus 8 ~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D 38 (542)
T PRK14021 8 QAVIIGMMGAGKTRVGKEVAQMMRLPFADAD 38 (542)
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4788999999999999999999999999996
No 458
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.99 E-value=0.0057 Score=57.43 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=22.4
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCC
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCY 254 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~ 254 (530)
-+++.||||+||||++++||..++.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCc
Confidence 4689999999999999999998764
No 459
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.98 E-value=0.015 Score=61.45 Aligned_cols=28 Identities=39% Similarity=0.681 Sum_probs=24.1
Q ss_pred CceEEEECCCCCChhHHHHHHHHHcCCc
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYLCYD 255 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l~~~ 255 (530)
+..+.+.||.|||||+++++|...+...
T Consensus 22 ~~~~fv~G~~GtGKs~l~~~i~~~~~~~ 49 (364)
T PF05970_consen 22 GLNFFVTGPAGTGKSFLIKAIIDYLRSR 49 (364)
T ss_pred CcEEEEEcCCCCChhHHHHHHHHHhccc
Confidence 4577899999999999999999988543
No 460
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.97 E-value=0.014 Score=55.05 Aligned_cols=24 Identities=38% Similarity=0.616 Sum_probs=21.7
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l 252 (530)
.-+.|.||+|+|||||++.|+..+
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358899999999999999999976
No 461
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.96 E-value=0.0078 Score=46.70 Aligned_cols=23 Identities=48% Similarity=0.723 Sum_probs=20.6
Q ss_pred eEEEECCCCCChhHHHHHHHHHc
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l 252 (530)
-.+|+||.|+||||+..||.--+
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999997665
No 462
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=95.93 E-value=0.0068 Score=57.23 Aligned_cols=26 Identities=35% Similarity=0.548 Sum_probs=23.6
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCc
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCYD 255 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~~ 255 (530)
-+.+.||+|+||||++++++..++..
T Consensus 5 ~i~l~G~sGsGKSTl~~~la~~l~~~ 30 (176)
T PRK09825 5 SYILMGVSGSGKSLIGSKIAALFSAK 30 (176)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCE
Confidence 47899999999999999999998764
No 463
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.93 E-value=0.019 Score=59.08 Aligned_cols=52 Identities=13% Similarity=0.118 Sum_probs=35.3
Q ss_pred cCCCCceEEEECCCCCChhHHHHHHHHHcC---------CcEEEEecCccCChHHHHHHHH
Q 009640 224 GRAWKRGYLLYGPPGSGKSSLIAAMANYLC---------YDVYDLELTKVTDNSELRALLL 275 (530)
Q Consensus 224 g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~---------~~i~~l~l~~~~~~~~L~~l~~ 275 (530)
|++...-++++||||||||+|+..+|.... -.++.++...--....+.+++.
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~ 151 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAE 151 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHH
Confidence 566666789999999999999998886642 2556665544323445555543
No 464
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.91 E-value=0.0074 Score=56.56 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=22.7
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcC
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLC 253 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~ 253 (530)
.-++|.|+||+||||+++++++.+.
T Consensus 8 ~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 8 YVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4678899999999999999999885
No 465
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=95.91 E-value=0.04 Score=54.52 Aligned_cols=62 Identities=23% Similarity=0.442 Sum_probs=40.0
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc-----CCcE----EEEec-----Cc------cC--------ChHHHHHHHHhcCCC
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYL-----CYDV----YDLEL-----TK------VT--------DNSELRALLLQTTNR 280 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l-----~~~i----~~l~l-----~~------~~--------~~~~L~~l~~~~~~~ 280 (530)
+.++|.||...|||++++++|--. |..+ ..+.+ +. +. .-.++..++..++.+
T Consensus 44 ~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G~~VPA~~~~i~~~d~I~t~~~~~d~~~~~~S~F~~E~~~~~~il~~~~~~ 123 (235)
T PF00488_consen 44 RIIIITGPNMSGKSTFLKQIGLIVILAQIGCFVPAESAEIPIFDRIFTRIGDDDSIESGLSTFMAEMKRLSSILRNATEK 123 (235)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHHHHHTTT--BSSSEEEEE--SEEEEEES---SSTTSSSHHHHHHHHHHHHHHH--TT
T ss_pred eEEEEeCCCccchhhHHHHHHHHhhhhhcCceeeecccccccccEEEeecccccccccccccHHHhHHHHHhhhhhcccc
Confidence 678999999999999999887643 3211 11111 11 10 113466778888899
Q ss_pred eEEEEcCccc
Q 009640 281 SIIVIEDIDC 290 (530)
Q Consensus 281 sII~IDeID~ 290 (530)
++|+|||+-.
T Consensus 124 sLvliDE~g~ 133 (235)
T PF00488_consen 124 SLVLIDELGR 133 (235)
T ss_dssp EEEEEESTTT
T ss_pred eeeecccccC
Confidence 9999999975
No 466
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=95.90 E-value=0.034 Score=65.48 Aligned_cols=62 Identities=21% Similarity=0.345 Sum_probs=40.8
Q ss_pred eEEEECCCCCChhHHHHHHHHH---cCCcEEEEecCccC----------ChHHHHHHHHh-------cCCCeEEEEcCcc
Q 009640 230 GYLLYGPPGSGKSSLIAAMANY---LCYDVYDLELTKVT----------DNSELRALLLQ-------TTNRSIIVIEDID 289 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~---l~~~i~~l~l~~~~----------~~~~L~~l~~~-------~~~~sII~IDeID 289 (530)
-++|.|+||||||++++++... .|+.++-+-++... ....+..++.. .....||||||+-
T Consensus 364 v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L~e~tGi~a~TI~sll~~~~~~~~~l~~~~vlIVDEAS 443 (988)
T PRK13889 364 LGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLEGGSGIASRTIASLEHGWGQGRDLLTSRDVLVIDEAG 443 (988)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHHhhccCcchhhHHHHHhhhcccccccccCcEEEEECcc
Confidence 3679999999999998877654 37777766544320 11234444432 2355799999997
Q ss_pred ch
Q 009640 290 CS 291 (530)
Q Consensus 290 ~~ 291 (530)
.+
T Consensus 444 Mv 445 (988)
T PRK13889 444 MV 445 (988)
T ss_pred cC
Confidence 65
No 467
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.88 E-value=0.017 Score=63.28 Aligned_cols=49 Identities=14% Similarity=0.127 Sum_probs=36.1
Q ss_pred cCCCCceEEEECCCCCChhHHHHHHHHH----cCCcEEEEecCccCChHHHHHHH
Q 009640 224 GRAWKRGYLLYGPPGSGKSSLIAAMANY----LCYDVYDLELTKVTDNSELRALL 274 (530)
Q Consensus 224 g~~~~rG~LL~GPPGTGKTsLa~AiA~~----l~~~i~~l~l~~~~~~~~L~~l~ 274 (530)
|+|..+.+|+.||||||||+|+..++.. .+.+.+.+.+. .+..++.+..
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e--E~~~~l~~~~ 69 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE--ESPQDIIKNA 69 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe--cCHHHHHHHH
Confidence 6788889999999999999999987543 26788777764 3444444443
No 468
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.87 E-value=0.018 Score=63.08 Aligned_cols=37 Identities=19% Similarity=0.146 Sum_probs=28.5
Q ss_pred cCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEe
Q 009640 224 GRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLE 260 (530)
Q Consensus 224 g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~ 260 (530)
|++...-+|+.||||||||+|+..++... |..+..++
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s 298 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFA 298 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 56777779999999999999998887755 44444443
No 469
>PRK13808 adenylate kinase; Provisional
Probab=95.85 E-value=0.0075 Score=62.47 Aligned_cols=29 Identities=24% Similarity=0.447 Sum_probs=26.0
Q ss_pred EEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 231 YLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 231 ~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
++|+||||+|||+++..||..+++..+++
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~~is~ 31 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQLST 31 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceecc
Confidence 79999999999999999999998866554
No 470
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=95.84 E-value=0.022 Score=59.49 Aligned_cols=62 Identities=23% Similarity=0.393 Sum_probs=40.6
Q ss_pred CceEEEECCCCCChhHHHHHHHHHcCC--cEEEEe------cC--c---c-------C--ChHHHHHHHHhc--CCCeEE
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYLCY--DVYDLE------LT--K---V-------T--DNSELRALLLQT--TNRSII 283 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l~~--~i~~l~------l~--~---~-------~--~~~~L~~l~~~~--~~~sII 283 (530)
+..+++.|++|+|||+++++++.++.- .++.++ +. . + . ..-.+.+++..+ ..|.+|
T Consensus 178 ~~~ili~G~tGsGKTTll~al~~~i~~~~riv~iEd~~El~~~~~~~~~l~~r~~~~~g~~~~t~~~ll~~aLR~~PD~I 257 (340)
T TIGR03819 178 RLAFLISGGTGSGKTTLLSALLALVAPDERIVLVEDAAELRPDHPHVVRLEARPANVEGAGAVTLTDLVRQALRMRPDRI 257 (340)
T ss_pred CCeEEEECCCCCCHHHHHHHHHccCCCCCcEEEECCcceecCCCCCeeeEEeccccccCcCccCHHHHHHHHhccCCCeE
Confidence 468999999999999999999988742 122111 10 0 0 0 112345555544 579999
Q ss_pred EEcCcc
Q 009640 284 VIEDID 289 (530)
Q Consensus 284 ~IDeID 289 (530)
++-||=
T Consensus 258 ivGEiR 263 (340)
T TIGR03819 258 VVGEVR 263 (340)
T ss_pred EEeCcC
Confidence 999985
No 471
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=95.84 E-value=0.0084 Score=65.53 Aligned_cols=63 Identities=21% Similarity=0.329 Sum_probs=42.8
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCcEEEEecC--cc------CChHHHHHHHHhc-----CCCeEEEEcCccchh
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCYDVYDLELT--KV------TDNSELRALLLQT-----TNRSIIVIEDIDCSV 292 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~--~~------~~~~~L~~l~~~~-----~~~sII~IDeID~~~ 292 (530)
.+||.|-||||||-+.+.+++....-++.--.. .+ ..+.--+.+-.++ ..+.|.+|||+|.+-
T Consensus 484 nvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~KdPvtrEWTLEaGALVLADkGvClIDEFDKMn 559 (854)
T KOG0477|consen 484 NVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVRKDPVTREWTLEAGALVLADKGVCLIDEFDKMN 559 (854)
T ss_pred eEEEecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEEEeeCCccceeeeccCeEEEccCceEEeehhhhhc
Confidence 399999999999999999999887777654321 11 1111112222222 568899999999983
No 472
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.84 E-value=0.012 Score=54.45 Aligned_cols=33 Identities=36% Similarity=0.418 Sum_probs=27.0
Q ss_pred eEEEECCCCCChhHHHHHHHHHc---CCcEEEEecC
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELT 262 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~ 262 (530)
-+.|.|.||+|||++|+++...| +.++|.++..
T Consensus 4 vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD 39 (156)
T PF01583_consen 4 VIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGD 39 (156)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCc
Confidence 47889999999999999999887 6777777643
No 473
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=95.82 E-value=0.0069 Score=56.36 Aligned_cols=26 Identities=35% Similarity=0.425 Sum_probs=22.4
Q ss_pred ECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 234 YGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 234 ~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
.||||+||||+++++|..++..+++-
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~ 26 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDG 26 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeC
Confidence 39999999999999999998765554
No 474
>PRK04328 hypothetical protein; Provisional
Probab=95.80 E-value=0.013 Score=58.34 Aligned_cols=49 Identities=22% Similarity=0.233 Sum_probs=34.7
Q ss_pred cCCCCceEEEECCCCCChhHHHHHHHHH---cCCcEEEEecCccCChHHHHHHH
Q 009640 224 GRAWKRGYLLYGPPGSGKSSLIAAMANY---LCYDVYDLELTKVTDNSELRALL 274 (530)
Q Consensus 224 g~~~~rG~LL~GPPGTGKTsLa~AiA~~---l~~~i~~l~l~~~~~~~~L~~l~ 274 (530)
|+|...-+|++||||||||+|+..++.+ -|...+.++..+ +...+.+.+
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee--~~~~i~~~~ 70 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEE--HPVQVRRNM 70 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeC--CHHHHHHHH
Confidence 5777778999999999999999876644 266777776544 334444443
No 475
>PRK06761 hypothetical protein; Provisional
Probab=95.80 E-value=0.0097 Score=60.37 Aligned_cols=33 Identities=27% Similarity=0.437 Sum_probs=28.0
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCCcEEEEec
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCYDVYDLEL 261 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l 261 (530)
+-+++.||||+||||+++.++..+....+++..
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~ 36 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEVEL 36 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcCceEEEE
Confidence 358899999999999999999999876666654
No 476
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.80 E-value=0.0062 Score=57.09 Aligned_cols=26 Identities=31% Similarity=0.356 Sum_probs=22.7
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCc
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCYD 255 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~~ 255 (530)
-++|.||+|+|||++++.|++.+...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~~~ 28 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDPNL 28 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCccc
Confidence 47899999999999999999977543
No 477
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.78 E-value=0.025 Score=64.66 Aligned_cols=69 Identities=17% Similarity=0.201 Sum_probs=42.0
Q ss_pred cCCCCceEEEECCCCCChhHHHHHHHHH---cCCcEEEEecCc---------------------cCChHHHHHHHH---h
Q 009640 224 GRAWKRGYLLYGPPGSGKSSLIAAMANY---LCYDVYDLELTK---------------------VTDNSELRALLL---Q 276 (530)
Q Consensus 224 g~~~~rG~LL~GPPGTGKTsLa~AiA~~---l~~~i~~l~l~~---------------------~~~~~~L~~l~~---~ 276 (530)
|++..+-++++||||||||+|+..++.. .+..+..++... ..+...+..++. +
T Consensus 56 Gip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~ 135 (790)
T PRK09519 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIR 135 (790)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhh
Confidence 4666677999999999999999654332 244444333221 112222222222 2
Q ss_pred cCCCeEEEEcCccchh
Q 009640 277 TTNRSIIVIEDIDCSV 292 (530)
Q Consensus 277 ~~~~sII~IDeID~~~ 292 (530)
...+.+||||-|..++
T Consensus 136 ~~~~~LVVIDSI~aL~ 151 (790)
T PRK09519 136 SGALDIVVIDSVAALV 151 (790)
T ss_pred cCCCeEEEEcchhhhc
Confidence 3578999999999875
No 478
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.77 E-value=0.013 Score=54.81 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=21.8
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l 252 (530)
.-+.|.|+||+|||++++++|..+
T Consensus 5 ~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 5 VTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 357889999999999999999987
No 479
>COG3378 Phage associated DNA primase [General function prediction only]
Probab=95.76 E-value=0.057 Score=59.14 Aligned_cols=65 Identities=22% Similarity=0.373 Sum_probs=43.3
Q ss_pred CCCceEEEECCCCCChhHHHHHHHHHcCCc-EEEEecCccCChHHHHHHHHhcCCCeEEEEcCccc
Q 009640 226 AWKRGYLLYGPPGSGKSSLIAAMANYLCYD-VYDLELTKVTDNSELRALLLQTTNRSIIVIEDIDC 290 (530)
Q Consensus 226 ~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~-i~~l~l~~~~~~~~L~~l~~~~~~~sII~IDeID~ 290 (530)
.|...+.||||-|+|||+++..|.+-+|.. +..+.++.+.....=+.-+......++|..+|.+.
T Consensus 228 ~~~k~~~l~G~G~nGKstf~~li~~llG~~n~~s~~~~~~~~~~~~~~~~A~Lvg~~~v~~~E~~k 293 (517)
T COG3378 228 SEQKLFWLYGPGGNGKSTFVDLISNLLGRYNVTSAPLTDLEADDRHPFGLAALVGKRLVTVSETEK 293 (517)
T ss_pred cceeEEEEEcCCCCChHHHHHHHHHHhccchhccccHHHhhhhccCcchHHHhhCceEEEecCccc
Confidence 467889999999999999999999999753 44444444432111112233345667777777765
No 480
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.75 E-value=0.023 Score=59.41 Aligned_cols=26 Identities=31% Similarity=0.567 Sum_probs=23.7
Q ss_pred CceEEEECCCCCChhHHHHHHHHHcC
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYLC 253 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l~ 253 (530)
+..+|+.||+|+||||+++|++.++.
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHcccC
Confidence 46899999999999999999999874
No 481
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.74 E-value=0.0085 Score=59.43 Aligned_cols=30 Identities=37% Similarity=0.734 Sum_probs=22.2
Q ss_pred EECCCCCChhHHHHHHHHHc---CCcEEEEecC
Q 009640 233 LYGPPGSGKSSLIAAMANYL---CYDVYDLELT 262 (530)
Q Consensus 233 L~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~ 262 (530)
+.||||+||||+++++...+ +.+++.+++-
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLD 33 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLD 33 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcc
Confidence 36999999999999999988 5666666653
No 482
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.71 E-value=0.0055 Score=58.66 Aligned_cols=66 Identities=24% Similarity=0.371 Sum_probs=42.2
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCcEE---EEec---------Ccc----------CChHHHHHHHHhcCCCeEEEEcC
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCYDVY---DLEL---------TKV----------TDNSELRALLLQTTNRSIIVIED 287 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~~i~---~l~l---------~~~----------~~~~~L~~l~~~~~~~sII~IDe 287 (530)
=++|.|+||+|||++++-+|..|.-.+. .+.. .++ ...+..+ ++..+-+.-+++.|+
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslpi~ke~yres~~ks~~r-lldSalkn~~VIvDd 81 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLPILKEVYRESFLKSVER-LLDSALKNYLVIVDD 81 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheecccccchHHHHHHHHHHHHHHH-HHHHHhcceEEEEec
Confidence 3689999999999999999999944333 2221 000 0111222 555555677899999
Q ss_pred ccchhhhhh
Q 009640 288 IDCSVDLTA 296 (530)
Q Consensus 288 ID~~~~~~~ 296 (530)
..-.-+.+.
T Consensus 82 tNYyksmRr 90 (261)
T COG4088 82 TNYYKSMRR 90 (261)
T ss_pred ccHHHHHHH
Confidence 887644433
No 483
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=95.71 E-value=0.023 Score=57.13 Aligned_cols=64 Identities=19% Similarity=0.360 Sum_probs=52.4
Q ss_pred CceEEEECCCCCChhHHHHHHH------HHcCCcEEEEecCccCChHHHHHHHHhc-----------------CCCeEEE
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMA------NYLCYDVYDLELTKVTDNSELRALLLQT-----------------TNRSIIV 284 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA------~~l~~~i~~l~l~~~~~~~~L~~l~~~~-----------------~~~sII~ 284 (530)
+..+||.||.|.|||.|++.|- +.+.-.++.+++..+.++..+..+|-.. ....++|
T Consensus 208 r~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggmlf 287 (531)
T COG4650 208 RAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGMLF 287 (531)
T ss_pred cCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCceEe
Confidence 4579999999999999999874 3467789999999998888888877532 2457999
Q ss_pred EcCccch
Q 009640 285 IEDIDCS 291 (530)
Q Consensus 285 IDeID~~ 291 (530)
+|||..+
T Consensus 288 ldeigel 294 (531)
T COG4650 288 LDEIGEL 294 (531)
T ss_pred hHhhhhc
Confidence 9999876
No 484
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=95.70 E-value=0.011 Score=56.78 Aligned_cols=37 Identities=22% Similarity=0.333 Sum_probs=27.7
Q ss_pred CceEEEECCCCCChhHHHHHHHHHc-CCcEEEEecCcc
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYL-CYDVYDLELTKV 264 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l-~~~i~~l~l~~~ 264 (530)
|.-+++.|+||+|||+++..+...+ +-+++.++...+
T Consensus 15 P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~ 52 (199)
T PF06414_consen 15 PTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEF 52 (199)
T ss_dssp -EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGG
T ss_pred CEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHH
Confidence 5678999999999999999999888 667777765544
No 485
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.70 E-value=0.015 Score=57.31 Aligned_cols=40 Identities=18% Similarity=0.172 Sum_probs=32.0
Q ss_pred cCCCCceEEEECCCCCChhHHHHHHHHHc----CCcEEEEecCc
Q 009640 224 GRAWKRGYLLYGPPGSGKSSLIAAMANYL----CYDVYDLELTK 263 (530)
Q Consensus 224 g~~~~rG~LL~GPPGTGKTsLa~AiA~~l----~~~i~~l~l~~ 263 (530)
|+++..-++|.||||+|||+++..+|..+ +.+++.+++..
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~ 52 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEM 52 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCC
Confidence 66666679999999999999998887654 77777776654
No 486
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.69 E-value=0.012 Score=56.53 Aligned_cols=26 Identities=35% Similarity=0.437 Sum_probs=23.4
Q ss_pred CceEEEECCCCCChhHHHHHHHHHcC
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYLC 253 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l~ 253 (530)
..-+.|.||+|+|||+|++.|+..+.
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 35688999999999999999999876
No 487
>PLN02165 adenylate isopentenyltransferase
Probab=95.69 E-value=0.01 Score=61.41 Aligned_cols=32 Identities=25% Similarity=0.429 Sum_probs=28.2
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCCcEEEEe
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCYDVYDLE 260 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~ 260 (530)
.-+.|.||+|+|||+|+.+||..++..+++.+
T Consensus 44 ~iivIiGPTGSGKStLA~~LA~~l~~eIIsaD 75 (334)
T PLN02165 44 KVVVIMGATGSGKSRLSVDLATRFPSEIINSD 75 (334)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHcCCceecCC
Confidence 35889999999999999999999998777654
No 488
>PRK06851 hypothetical protein; Provisional
Probab=95.69 E-value=0.009 Score=62.74 Aligned_cols=27 Identities=33% Similarity=0.603 Sum_probs=24.0
Q ss_pred CCceEEEECCCCCChhHHHHHHHHHcC
Q 009640 227 WKRGYLLYGPPGSGKSSLIAAMANYLC 253 (530)
Q Consensus 227 ~~rG~LL~GPPGTGKTsLa~AiA~~l~ 253 (530)
..+-++|.||||||||+|++.++..+.
T Consensus 29 ~~~~~il~G~pGtGKStl~~~i~~~~~ 55 (367)
T PRK06851 29 ANRIFILKGGPGTGKSTLMKKIGEEFL 55 (367)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356799999999999999999998883
No 489
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.68 E-value=0.017 Score=59.78 Aligned_cols=51 Identities=22% Similarity=0.304 Sum_probs=33.1
Q ss_pred hhhHHHHHHHHHHHcC-hhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc
Q 009640 201 QLKKQITEDLTAFANG-KEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 201 ~~k~~i~~~l~~~l~~-~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l 252 (530)
.+++.+.+.+...+.. ...+. .....+.-++|.||||+||||+++.+|..+
T Consensus 87 ~~~~~l~~~l~~~l~~~~~~~~-~~~~~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 87 ELKELLKEELAEILEPVEKPLN-IEEKKPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred HHHHHHHHHHHHHhCcCCcccc-ccCCCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 3555566666666542 11111 111224568889999999999999999987
No 490
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.66 E-value=0.026 Score=58.28 Aligned_cols=52 Identities=15% Similarity=0.137 Sum_probs=35.4
Q ss_pred cCCCCceEEEECCCCCChhHHHHHHHHHc---------CCcEEEEecCccCChHHHHHHHH
Q 009640 224 GRAWKRGYLLYGPPGSGKSSLIAAMANYL---------CYDVYDLELTKVTDNSELRALLL 275 (530)
Q Consensus 224 g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---------~~~i~~l~l~~~~~~~~L~~l~~ 275 (530)
|++...-++++||||||||+++..+|-.. +..++.++...--....+.+...
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~ 158 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAE 158 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHH
Confidence 56766778999999999999999888653 23556665544323444554443
No 491
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.66 E-value=0.01 Score=58.04 Aligned_cols=38 Identities=21% Similarity=0.108 Sum_probs=28.1
Q ss_pred cCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEec
Q 009640 224 GRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLEL 261 (530)
Q Consensus 224 g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l 261 (530)
|++...-++++||||||||+|+..++... +..+..++.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 56666779999999999999999877543 444444443
No 492
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.65 E-value=0.015 Score=56.04 Aligned_cols=33 Identities=18% Similarity=0.157 Sum_probs=25.5
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcC-CcEEEEec
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLC-YDVYDLEL 261 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~-~~i~~l~l 261 (530)
.-+.+.||||+|||||+++|+..++ ..+..++.
T Consensus 7 ~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~ 40 (209)
T PRK05480 7 IIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQ 40 (209)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeC
Confidence 4578899999999999999999983 33444443
No 493
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=95.64 E-value=0.011 Score=56.79 Aligned_cols=31 Identities=26% Similarity=0.189 Sum_probs=27.8
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCcEEEEe
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCYDVYDLE 260 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~ 260 (530)
-+.++||||+|||++++.++..+|+.+++.+
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i~~D 33 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPILDAD 33 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEeeCc
Confidence 3789999999999999999998899988764
No 494
>PTZ00202 tuzin; Provisional
Probab=95.64 E-value=0.036 Score=59.25 Aligned_cols=77 Identities=17% Similarity=0.184 Sum_probs=52.0
Q ss_pred CCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccCChH
Q 009640 189 HPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVTDNS 268 (530)
Q Consensus 189 ~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~~~~ 268 (530)
-|....+++|-+....++...+.. .....++-..|.||+|||||+|++.++..++...|.+++.. ...
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~----------~d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNprg--~eE 324 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRR----------LDTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVRG--TED 324 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhc----------cCCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCCC--HHH
Confidence 344456777777766666554432 11122356789999999999999999999998888888772 234
Q ss_pred HHHHHHHhc
Q 009640 269 ELRALLLQT 277 (530)
Q Consensus 269 ~L~~l~~~~ 277 (530)
-|+.++...
T Consensus 325 lLr~LL~AL 333 (550)
T PTZ00202 325 TLRSVVKAL 333 (550)
T ss_pred HHHHHHHHc
Confidence 455555544
No 495
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=95.63 E-value=0.012 Score=57.57 Aligned_cols=30 Identities=37% Similarity=0.514 Sum_probs=26.8
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
-+.+.||+|+||||+++.+|..+++.+++-
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~~~~~~~~~ 33 (217)
T TIGR00017 4 IIAIDGPSGAGKSTVAKAVAEKLGYAYLDS 33 (217)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceeeC
Confidence 467899999999999999999999887764
No 496
>PRK13975 thymidylate kinase; Provisional
Probab=95.61 E-value=0.017 Score=54.89 Aligned_cols=26 Identities=27% Similarity=0.202 Sum_probs=23.6
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCc
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCYD 255 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~~ 255 (530)
-+.|.||+|+||||+++.+|..++..
T Consensus 4 ~I~ieG~~GsGKtT~~~~L~~~l~~~ 29 (196)
T PRK13975 4 FIVFEGIDGSGKTTQAKLLAEKLNAF 29 (196)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 47889999999999999999999864
No 497
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=95.61 E-value=0.019 Score=61.51 Aligned_cols=62 Identities=24% Similarity=0.398 Sum_probs=39.7
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCcEEEEecCc--------cCChHHHHHHHHh-----cCCCeEEEEcCccch
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTK--------VTDNSELRALLLQ-----TTNRSIIVIEDIDCS 291 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~--------~~~~~~L~~l~~~-----~~~~sII~IDeID~~ 291 (530)
++||-|.|||-||-|.+-+-.-.-.-+|.---.+ +..+..-+....+ .....|+.|||+|.+
T Consensus 366 NVLLLGDPgtAKSQlLKFvEkvsPIaVYTSGKGSSAAGLTASV~RD~~tReFylEGGAMVLADgGVvCIDEFDKM 440 (729)
T KOG0481|consen 366 NVLLLGDPGTAKSQLLKFVEKVSPIAVYTSGKGSSAAGLTASVIRDPSTREFYLEGGAMVLADGGVVCIDEFDKM 440 (729)
T ss_pred eEEEecCCchhHHHHHHHHHhcCceEEEecCCCcccccceeeEEecCCcceEEEecceEEEecCCEEEeehhhcc
Confidence 4899999999999999998877766666542111 0011111111111 145689999999987
No 498
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.60 E-value=0.014 Score=55.17 Aligned_cols=34 Identities=26% Similarity=0.388 Sum_probs=26.4
Q ss_pred EEEECCCCCChhHHHHHHHHHcC---CcEEEEecCcc
Q 009640 231 YLLYGPPGSGKSSLIAAMANYLC---YDVYDLELTKV 264 (530)
Q Consensus 231 ~LL~GPPGTGKTsLa~AiA~~l~---~~i~~l~l~~~ 264 (530)
+.+.|+||+|||++++.|+..++ .++..+++.++
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf 38 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDY 38 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhc
Confidence 57899999999999999999984 45555554443
No 499
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.57 E-value=0.092 Score=51.84 Aligned_cols=21 Identities=43% Similarity=0.545 Sum_probs=18.4
Q ss_pred EEEECCCCCChhHHHHHHHHH
Q 009640 231 YLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 231 ~LL~GPPGTGKTsLa~AiA~~ 251 (530)
-+|+||||+|||+|+..+|-.
T Consensus 4 ~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHH
Confidence 379999999999999988764
No 500
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.55 E-value=0.012 Score=56.10 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=22.4
Q ss_pred CceEEEECCCCCChhHHHHHHHHHc
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l 252 (530)
++-++|.||||+|||+|++++....
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 4568899999999999999998876
Done!