Query 009640
Match_columns 530
No_of_seqs 474 out of 3036
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 09:44:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009640.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009640hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 1.9E-43 6.5E-48 369.1 20.8 219 185-441 139-365 (405)
2 4b4t_I 26S protease regulatory 100.0 6.8E-43 2.3E-47 366.0 20.4 219 185-441 173-399 (437)
3 4b4t_M 26S protease regulatory 100.0 4.9E-43 1.7E-47 370.9 19.0 220 185-442 172-399 (434)
4 4b4t_K 26S protease regulatory 100.0 6.9E-42 2.4E-46 361.8 21.5 219 185-441 163-390 (428)
5 4b4t_L 26S protease subunit RP 100.0 7.6E-42 2.6E-46 362.0 21.5 218 186-441 173-398 (437)
6 4b4t_H 26S protease regulatory 100.0 2.2E-41 7.4E-46 357.7 20.7 219 185-441 200-426 (467)
7 3cf2_A TER ATPase, transitiona 100.0 6.1E-39 2.1E-43 361.5 10.5 278 186-506 469-774 (806)
8 3cf2_A TER ATPase, transitiona 100.0 2.9E-37 9.9E-42 347.9 21.8 266 188-497 198-483 (806)
9 2x8a_A Nuclear valosin-contain 100.0 2E-31 6.7E-36 267.6 19.1 214 189-442 5-230 (274)
10 1xwi_A SKD1 protein; VPS4B, AA 100.0 3.6E-31 1.2E-35 271.7 21.4 221 188-453 6-235 (322)
11 3cf0_A Transitional endoplasmi 100.0 9.9E-31 3.4E-35 265.7 23.0 218 187-442 8-233 (301)
12 3hu3_A Transitional endoplasmi 100.0 4.3E-31 1.5E-35 285.2 15.7 265 189-497 199-483 (489)
13 3eie_A Vacuolar protein sortin 100.0 4E-31 1.4E-35 271.1 14.3 225 185-454 9-241 (322)
14 2qp9_X Vacuolar protein sortin 100.0 2.4E-30 8.2E-35 269.0 15.2 221 187-452 44-272 (355)
15 2zan_A Vacuolar protein sortin 100.0 1.8E-29 6.2E-34 269.9 19.2 223 186-453 126-357 (444)
16 2ce7_A Cell division protein F 100.0 4.1E-29 1.4E-33 268.1 21.3 214 188-440 10-231 (476)
17 3h4m_A Proteasome-activating n 100.0 2E-29 6.9E-34 252.7 17.2 220 185-442 8-235 (285)
18 1lv7_A FTSH; alpha/beta domain 100.0 2.5E-28 8.5E-33 241.6 22.1 217 186-441 4-228 (257)
19 2qz4_A Paraplegin; AAA+, SPG7, 100.0 5.3E-28 1.8E-32 238.8 23.8 215 190-441 2-225 (262)
20 3d8b_A Fidgetin-like protein 1 100.0 5.7E-28 1.9E-32 251.2 16.0 263 188-496 78-355 (357)
21 3b9p_A CG5977-PA, isoform A; A 99.9 2.9E-27 1E-31 238.5 17.1 266 185-496 12-293 (297)
22 2dhr_A FTSH; AAA+ protein, hex 99.9 6.8E-27 2.3E-31 252.2 19.6 214 189-441 26-247 (499)
23 3vfd_A Spastin; ATPase, microt 99.9 4.3E-26 1.5E-30 239.6 22.3 217 185-442 106-330 (389)
24 2r62_A Cell division protease 99.9 6.1E-28 2.1E-32 240.0 7.7 217 188-441 5-229 (268)
25 1ixz_A ATP-dependent metallopr 99.9 4.3E-26 1.5E-30 225.2 20.1 218 185-441 7-232 (254)
26 1ypw_A Transitional endoplasmi 99.9 3.7E-29 1.3E-33 285.3 -6.8 218 187-442 470-695 (806)
27 1iy2_A ATP-dependent metallopr 99.9 6.4E-25 2.2E-29 220.0 20.9 217 186-441 32-256 (278)
28 3t15_A Ribulose bisphosphate c 99.9 8.4E-26 2.9E-30 228.7 11.1 173 222-437 30-223 (293)
29 1ypw_A Transitional endoplasmi 99.9 5.1E-24 1.7E-28 243.0 20.9 213 188-441 198-418 (806)
30 3pfi_A Holliday junction ATP-d 99.8 3E-19 1E-23 183.1 20.9 199 180-440 17-229 (338)
31 2c9o_A RUVB-like 1; hexameric 99.8 3.1E-22 1.1E-26 214.6 -2.2 215 188-439 31-261 (456)
32 3syl_A Protein CBBX; photosynt 99.8 3.1E-18 1.1E-22 173.0 19.1 169 195-411 32-221 (309)
33 3u61_B DNA polymerase accessor 99.8 2.1E-18 7E-23 175.9 16.6 198 180-456 14-220 (324)
34 1g41_A Heat shock protein HSLU 99.8 7.7E-20 2.6E-24 193.8 4.5 163 194-403 15-188 (444)
35 1hqc_A RUVB; extended AAA-ATPa 99.8 1E-17 3.4E-22 170.3 19.6 194 187-440 5-213 (324)
36 1ofh_A ATP-dependent HSL prote 99.7 2.8E-17 9.7E-22 165.4 18.4 219 194-456 15-270 (310)
37 2chg_A Replication factor C sm 99.7 1.1E-16 3.9E-21 151.7 18.9 187 185-455 8-207 (226)
38 1d2n_A N-ethylmaleimide-sensit 99.7 5.1E-17 1.7E-21 161.7 17.2 198 194-441 33-245 (272)
39 3uk6_A RUVB-like 2; hexameric 99.7 2E-16 6.9E-21 163.6 20.6 157 189-409 38-274 (368)
40 1njg_A DNA polymerase III subu 99.7 7.1E-16 2.4E-20 147.8 20.9 158 181-408 12-199 (250)
41 1sxj_A Activator 1 95 kDa subu 99.7 1.7E-16 5.9E-21 172.5 17.2 172 179-408 26-223 (516)
42 3m6a_A ATP-dependent protease 99.7 4.5E-16 1.5E-20 170.2 20.5 161 192-407 79-266 (543)
43 2chq_A Replication factor C sm 99.7 2.6E-16 8.9E-21 158.8 15.8 158 181-409 6-176 (319)
44 3pvs_A Replication-associated 99.7 6.5E-16 2.2E-20 165.0 19.0 194 186-459 18-222 (447)
45 1iqp_A RFCS; clamp loader, ext 99.7 1.4E-15 4.8E-20 153.9 17.4 158 181-409 14-184 (327)
46 1jbk_A CLPB protein; beta barr 99.6 2.4E-16 8.3E-21 145.9 9.5 152 189-403 17-194 (195)
47 1sxj_B Activator 1 37 kDa subu 99.6 2.1E-15 7.2E-20 152.4 16.8 188 180-453 9-210 (323)
48 1sxj_D Activator 1 41 kDa subu 99.6 2.3E-15 7.9E-20 154.3 17.3 158 180-408 25-206 (353)
49 2r44_A Uncharacterized protein 99.6 5E-15 1.7E-19 151.3 19.7 151 193-409 26-200 (331)
50 2v1u_A Cell division control p 99.6 9.2E-16 3.1E-20 158.7 14.4 161 191-408 16-215 (387)
51 4fcw_A Chaperone protein CLPB; 99.6 2.6E-15 8.9E-20 151.5 17.3 160 194-408 17-230 (311)
52 3hws_A ATP-dependent CLP prote 99.6 8E-16 2.7E-20 159.6 12.9 176 195-407 16-269 (363)
53 1in4_A RUVB, holliday junction 99.6 1.5E-14 5E-19 148.7 21.2 195 185-439 16-224 (334)
54 3bos_A Putative DNA replicatio 99.6 1.6E-15 5.5E-20 146.3 13.2 160 186-408 20-188 (242)
55 1jr3_A DNA polymerase III subu 99.6 1.3E-14 4.5E-19 149.8 19.7 185 185-438 7-221 (373)
56 2qby_B CDC6 homolog 3, cell di 99.6 1.1E-14 3.7E-19 151.0 18.8 151 194-408 20-211 (384)
57 1l8q_A Chromosomal replication 99.6 5.6E-15 1.9E-19 150.7 15.0 189 187-439 4-209 (324)
58 1sxj_E Activator 1 40 kDa subu 99.6 1.5E-14 5.1E-19 148.7 17.7 190 181-455 3-240 (354)
59 1g8p_A Magnesium-chelatase 38 99.6 2.4E-14 8.1E-19 146.7 18.9 156 187-408 17-233 (350)
60 1fnn_A CDC6P, cell division co 99.6 5.4E-14 1.9E-18 145.7 20.5 159 192-408 15-207 (389)
61 2p65_A Hypothetical protein PF 99.6 3E-15 1E-19 138.3 9.3 146 188-395 16-187 (187)
62 2qby_A CDC6 homolog 1, cell di 99.6 2.3E-14 7.9E-19 147.9 16.5 160 190-408 16-211 (386)
63 1um8_A ATP-dependent CLP prote 99.6 8.2E-14 2.8E-18 145.1 20.3 173 195-405 22-284 (376)
64 1sxj_C Activator 1 40 kDa subu 99.6 4.5E-14 1.5E-18 145.0 17.2 158 179-407 12-182 (340)
65 3te6_A Regulatory protein SIR3 99.5 9E-14 3.1E-18 141.6 17.7 177 228-459 45-286 (318)
66 2z4s_A Chromosomal replication 99.5 3.7E-14 1.3E-18 151.1 15.6 190 186-439 97-307 (440)
67 3pxg_A Negative regulator of g 99.5 1.8E-13 6.1E-18 147.0 18.4 148 187-409 173-340 (468)
68 1r6b_X CLPA protein; AAA+, N-t 99.5 2.8E-13 9.7E-18 153.7 20.1 154 195-408 459-667 (758)
69 1a5t_A Delta prime, HOLB; zinc 99.5 8.6E-13 3E-17 135.4 20.6 124 228-407 24-180 (334)
70 3pxi_A Negative regulator of g 99.5 2.1E-13 7.3E-18 154.8 17.1 148 187-409 173-340 (758)
71 1qvr_A CLPB protein; coiled co 99.5 9.2E-14 3.1E-18 159.7 13.8 189 188-439 164-386 (854)
72 1r6b_X CLPA protein; AAA+, N-t 99.5 4.2E-13 1.4E-17 152.3 18.8 158 188-407 180-362 (758)
73 2bjv_A PSP operon transcriptio 99.5 6.6E-13 2.3E-17 131.2 17.9 154 191-407 3-194 (265)
74 3pxi_A Negative regulator of g 99.5 2.3E-13 7.9E-18 154.5 16.0 158 194-408 491-676 (758)
75 3nbx_X ATPase RAVA; AAA+ ATPas 99.4 2.2E-12 7.4E-17 139.2 16.5 146 195-408 23-197 (500)
76 3n70_A Transport activator; si 99.4 4.8E-13 1.6E-17 120.6 9.4 84 195-291 2-88 (145)
77 1qvr_A CLPB protein; coiled co 99.4 2.2E-12 7.7E-17 148.2 15.8 159 194-408 558-771 (854)
78 2gno_A DNA polymerase III, gam 99.3 3.8E-12 1.3E-16 129.1 12.6 122 229-408 19-153 (305)
79 3co5_A Putative two-component 99.3 5E-13 1.7E-17 120.2 4.8 83 195-291 5-87 (143)
80 1ojl_A Transcriptional regulat 99.3 1.7E-11 5.8E-16 124.2 16.5 151 195-407 3-190 (304)
81 3f9v_A Minichromosome maintena 99.3 2.9E-13 9.8E-18 149.4 2.6 127 230-409 329-492 (595)
82 1w5s_A Origin recognition comp 99.3 3.4E-11 1.2E-15 125.7 17.8 164 192-408 20-229 (412)
83 4akg_A Glutathione S-transfera 99.3 1.3E-11 4.3E-16 154.1 13.9 137 228-408 1267-1432(2695)
84 3ec2_A DNA replication protein 99.3 3.9E-12 1.3E-16 118.3 6.9 96 188-291 4-112 (180)
85 2w58_A DNAI, primosome compone 99.1 9.7E-11 3.3E-15 110.6 7.0 97 189-291 20-127 (202)
86 1svm_A Large T antigen; AAA+ f 99.1 4.9E-11 1.7E-15 124.3 5.4 121 223-393 164-284 (377)
87 1tue_A Replication protein E1; 99.0 4.7E-10 1.6E-14 106.5 7.2 62 224-291 54-115 (212)
88 3cmw_A Protein RECA, recombina 99.0 5.6E-10 1.9E-14 134.2 8.9 149 189-372 1015-1218(1706)
89 2qgz_A Helicase loader, putati 99.0 3.1E-10 1.1E-14 115.2 5.6 97 189-291 119-226 (308)
90 3k1j_A LON protease, ATP-depen 99.0 1.9E-09 6.3E-14 119.3 12.2 56 185-255 32-87 (604)
91 2kjq_A DNAA-related protein; s 98.9 2.6E-09 9E-14 96.7 7.3 57 228-291 36-95 (149)
92 2vhj_A Ntpase P4, P4; non- hyd 98.8 2.8E-09 9.5E-14 108.0 4.0 68 224-292 119-195 (331)
93 2r2a_A Uncharacterized protein 98.7 1.7E-08 5.9E-13 95.9 8.5 120 229-397 6-156 (199)
94 4akg_A Glutathione S-transfera 98.7 5.9E-08 2E-12 121.5 14.8 130 228-409 645-795 (2695)
95 1u0j_A DNA replication protein 98.7 8.2E-08 2.8E-12 94.9 12.5 59 226-291 102-160 (267)
96 3vkg_A Dynein heavy chain, cyt 98.7 1.3E-07 4.5E-12 119.2 16.0 134 228-407 1304-1469(3245)
97 2fna_A Conserved hypothetical 98.7 2.4E-07 8.1E-12 94.0 14.6 55 192-263 11-65 (357)
98 2qen_A Walker-type ATPase; unk 98.6 8.9E-07 3.1E-11 89.5 17.6 54 191-261 9-62 (350)
99 3f8t_A Predicted ATPase involv 98.4 1.4E-06 4.9E-11 92.2 12.6 138 196-398 215-385 (506)
100 1ny5_A Transcriptional regulat 98.4 6.2E-06 2.1E-10 86.0 17.5 87 194-291 137-243 (387)
101 3dzd_A Transcriptional regulat 98.4 6.9E-06 2.4E-10 85.1 17.5 86 195-291 130-234 (368)
102 3vkg_A Dynein heavy chain, cyt 98.3 3.3E-06 1.1E-10 106.8 15.0 130 228-409 604-755 (3245)
103 3cmu_A Protein RECA, recombina 98.3 8E-07 2.7E-11 108.3 7.8 69 225-293 1424-1519(2050)
104 1jr3_D DNA polymerase III, del 98.2 1.3E-05 4.4E-10 81.7 14.0 122 228-408 18-156 (343)
105 1ye8_A Protein THEP1, hypothet 98.1 1.1E-05 3.6E-10 75.0 9.7 27 230-256 2-28 (178)
106 3upu_A ATP-dependent DNA helic 97.8 6.1E-05 2.1E-09 80.2 11.2 70 178-262 10-83 (459)
107 1z6t_A APAF-1, apoptotic prote 97.7 0.00048 1.6E-08 75.1 15.0 47 193-250 123-169 (591)
108 2cvh_A DNA repair and recombin 97.6 0.00023 7.8E-09 67.0 10.1 40 224-263 16-55 (220)
109 2orw_A Thymidine kinase; TMTK, 97.6 5.4E-05 1.8E-09 70.5 4.8 62 230-291 5-88 (184)
110 3trf_A Shikimate kinase, SK; a 97.4 9.9E-05 3.4E-09 67.9 4.8 32 228-259 5-36 (185)
111 3cmu_A Protein RECA, recombina 97.4 0.00022 7.4E-09 87.3 8.9 69 224-292 1077-1172(2050)
112 1qhx_A CPT, protein (chloramph 97.4 0.00012 4.1E-09 66.8 5.1 33 229-261 4-36 (178)
113 2w0m_A SSO2452; RECA, SSPF, un 97.4 0.00051 1.8E-08 64.8 9.5 37 224-260 19-58 (235)
114 3hr8_A Protein RECA; alpha and 97.4 0.00046 1.6E-08 71.0 9.6 69 224-292 57-152 (356)
115 3sfz_A APAF-1, apoptotic pepti 97.4 0.0019 6.5E-08 76.0 16.0 51 190-251 120-170 (1249)
116 2c9o_A RUVB-like 1; hexameric 97.4 0.00073 2.5E-08 71.7 11.3 92 343-457 310-415 (456)
117 2rhm_A Putative kinase; P-loop 97.4 0.00013 4.6E-09 67.2 4.7 33 226-258 3-35 (193)
118 3kb2_A SPBC2 prophage-derived 97.4 0.00013 4.5E-09 65.8 4.5 31 230-260 3-33 (173)
119 3e1s_A Exodeoxyribonuclease V, 97.3 0.0012 4.2E-08 72.2 12.9 33 229-261 205-240 (574)
120 3vaa_A Shikimate kinase, SK; s 97.3 0.00016 5.3E-09 67.7 4.8 32 228-259 25-56 (199)
121 2a5y_B CED-4; apoptosis; HET: 97.3 0.0061 2.1E-07 66.1 17.3 43 198-250 132-174 (549)
122 2krk_A 26S protease regulatory 97.3 9.1E-05 3.1E-09 60.3 2.0 52 390-442 7-58 (86)
123 2ehv_A Hypothetical protein PH 97.2 0.0013 4.4E-08 63.0 10.3 26 224-249 26-51 (251)
124 3kw6_A 26S protease regulatory 97.2 0.00035 1.2E-08 55.5 5.2 50 392-442 1-50 (78)
125 1via_A Shikimate kinase; struc 97.2 0.0002 6.8E-09 65.4 4.2 30 230-259 6-35 (175)
126 2zr9_A Protein RECA, recombina 97.2 0.00067 2.3E-08 69.6 8.4 69 224-292 57-152 (349)
127 3iij_A Coilin-interacting nucl 97.2 0.00024 8.3E-09 65.1 4.5 32 228-259 11-42 (180)
128 1kag_A SKI, shikimate kinase I 97.2 0.00026 8.9E-09 64.1 4.5 30 229-258 5-34 (173)
129 2z43_A DNA repair and recombin 97.2 0.00068 2.3E-08 68.7 8.1 40 224-263 103-151 (324)
130 1zuh_A Shikimate kinase; alpha 97.2 0.00028 9.6E-09 63.8 4.4 31 229-259 8-38 (168)
131 1y63_A LMAJ004144AAA protein; 97.1 0.00021 7.2E-09 66.0 3.5 32 228-259 10-42 (184)
132 2iyv_A Shikimate kinase, SK; t 97.1 0.00029 1E-08 64.6 4.4 31 230-260 4-34 (184)
133 1nlf_A Regulatory protein REPA 97.1 0.00087 3E-08 66.1 8.1 29 224-252 26-54 (279)
134 1u94_A RECA protein, recombina 97.1 0.00096 3.3E-08 68.7 8.5 69 224-292 59-154 (356)
135 2ze6_A Isopentenyl transferase 97.1 0.00029 1E-08 68.8 4.0 32 230-261 3-34 (253)
136 1e6c_A Shikimate kinase; phosp 97.1 0.00035 1.2E-08 63.2 4.2 30 230-259 4-33 (173)
137 1gvn_B Zeta; postsegregational 97.1 0.00083 2.8E-08 66.9 7.1 57 200-261 10-66 (287)
138 1pzn_A RAD51, DNA repair and r 97.0 0.001 3.6E-08 68.1 8.0 29 224-252 127-155 (349)
139 3lw7_A Adenylate kinase relate 97.0 0.00041 1.4E-08 62.2 4.1 29 230-259 3-31 (179)
140 1g5t_A COB(I)alamin adenosyltr 97.0 0.0032 1.1E-07 59.1 10.2 32 230-261 30-64 (196)
141 2cdn_A Adenylate kinase; phosp 97.0 0.00056 1.9E-08 63.8 5.0 31 229-259 21-51 (201)
142 2r8r_A Sensor protein; KDPD, P 97.0 0.0077 2.6E-07 57.8 12.9 33 229-261 7-42 (228)
143 1tev_A UMP-CMP kinase; ploop, 97.0 0.00049 1.7E-08 63.2 4.4 31 229-259 4-34 (196)
144 1qf9_A UMP/CMP kinase, protein 97.0 0.00052 1.8E-08 62.9 4.5 32 228-259 6-37 (194)
145 3cm0_A Adenylate kinase; ATP-b 97.0 0.0004 1.4E-08 63.7 3.6 30 230-259 6-35 (186)
146 1v5w_A DMC1, meiotic recombina 97.0 0.002 7E-08 65.7 9.2 40 224-263 118-166 (343)
147 1kht_A Adenylate kinase; phosp 97.0 0.00039 1.3E-08 63.8 3.5 30 229-258 4-38 (192)
148 2pt5_A Shikimate kinase, SK; a 97.0 0.00055 1.9E-08 61.6 4.4 30 230-259 2-31 (168)
149 3jvv_A Twitching mobility prot 96.9 0.0015 5E-08 67.3 7.9 60 230-289 125-206 (356)
150 3t61_A Gluconokinase; PSI-biol 96.9 0.00057 1.9E-08 63.8 4.4 31 229-259 19-49 (202)
151 3dl0_A Adenylate kinase; phosp 96.9 0.00058 2E-08 64.4 4.5 29 231-259 3-31 (216)
152 1xp8_A RECA protein, recombina 96.9 0.0016 5.5E-08 67.2 8.1 69 224-292 70-165 (366)
153 1ly1_A Polynucleotide kinase; 96.9 0.00037 1.3E-08 63.3 2.9 29 229-257 3-32 (181)
154 3be4_A Adenylate kinase; malar 96.9 0.00055 1.9E-08 64.9 4.2 31 229-259 6-36 (217)
155 2i3b_A HCR-ntpase, human cance 96.9 0.0021 7E-08 60.1 8.0 23 230-252 3-25 (189)
156 2c95_A Adenylate kinase 1; tra 96.9 0.00061 2.1E-08 62.8 4.3 31 229-259 10-40 (196)
157 2b8t_A Thymidine kinase; deoxy 96.9 0.0054 1.9E-07 58.8 11.1 61 231-291 15-101 (223)
158 3fb4_A Adenylate kinase; psych 96.9 0.00066 2.2E-08 64.0 4.4 29 231-259 3-31 (216)
159 1aky_A Adenylate kinase; ATP:A 96.9 0.00063 2.1E-08 64.5 4.2 31 229-259 5-35 (220)
160 2bwj_A Adenylate kinase 5; pho 96.9 0.00067 2.3E-08 62.7 4.3 31 229-259 13-43 (199)
161 1zd8_A GTP:AMP phosphotransfer 96.9 0.00065 2.2E-08 64.8 4.2 32 228-259 7-38 (227)
162 2vli_A Antibiotic resistance p 96.9 0.00059 2E-08 62.3 3.8 29 229-257 6-34 (183)
163 1knq_A Gluconate kinase; ALFA/ 96.8 0.00071 2.4E-08 61.5 4.2 31 229-259 9-39 (175)
164 1ak2_A Adenylate kinase isoenz 96.8 0.0008 2.7E-08 64.5 4.5 31 229-259 17-47 (233)
165 1ukz_A Uridylate kinase; trans 96.8 0.00085 2.9E-08 62.5 4.3 31 229-259 16-46 (203)
166 2p5t_B PEZT; postsegregational 96.8 0.0013 4.5E-08 64.0 5.7 34 228-261 32-65 (253)
167 3vlf_B 26S protease regulatory 96.8 0.00042 1.4E-08 56.6 1.7 47 395-442 2-48 (88)
168 2pbr_A DTMP kinase, thymidylat 96.8 0.0011 3.7E-08 60.9 4.8 30 231-260 3-35 (195)
169 1zak_A Adenylate kinase; ATP:A 96.7 0.00072 2.5E-08 64.2 3.3 32 228-259 5-36 (222)
170 1e4v_A Adenylate kinase; trans 96.7 0.00096 3.3E-08 63.0 4.1 29 231-259 3-31 (214)
171 4eun_A Thermoresistant glucoki 96.7 0.0012 4E-08 61.7 4.6 30 229-258 30-59 (200)
172 1zp6_A Hypothetical protein AT 96.7 0.00086 3E-08 61.7 3.7 32 228-259 9-40 (191)
173 2ga8_A Hypothetical 39.9 kDa p 96.7 0.0006 2E-08 69.9 2.7 50 200-258 5-54 (359)
174 2bbw_A Adenylate kinase 4, AK4 96.7 0.0012 4.2E-08 63.7 4.5 30 229-258 28-57 (246)
175 2pez_A Bifunctional 3'-phospho 96.7 0.0016 5.5E-08 59.5 5.1 32 229-260 6-40 (179)
176 2xb4_A Adenylate kinase; ATP-b 96.6 0.0012 4E-08 63.0 4.2 29 231-259 3-31 (223)
177 3crm_A TRNA delta(2)-isopenten 96.6 0.0012 4.2E-08 66.9 4.3 34 228-261 5-38 (323)
178 4b3f_X DNA-binding protein smu 96.6 0.0031 1E-07 69.9 7.9 57 192-263 184-243 (646)
179 2i1q_A DNA repair and recombin 96.6 0.0026 8.8E-08 64.1 6.7 28 224-251 94-121 (322)
180 3tlx_A Adenylate kinase 2; str 96.6 0.0015 5.3E-08 63.2 4.7 32 228-259 29-60 (243)
181 2z0h_A DTMP kinase, thymidylat 96.6 0.0017 5.8E-08 59.8 4.8 31 231-261 3-36 (197)
182 3umf_A Adenylate kinase; rossm 96.6 0.0014 4.7E-08 62.8 4.2 30 228-257 29-58 (217)
183 3cmw_A Protein RECA, recombina 96.6 0.0031 1.1E-07 76.4 8.2 69 224-292 30-125 (1706)
184 1nks_A Adenylate kinase; therm 96.6 0.00086 2.9E-08 61.4 2.7 24 230-253 3-26 (194)
185 2jaq_A Deoxyguanosine kinase; 96.6 0.0013 4.5E-08 60.8 4.0 28 231-258 3-30 (205)
186 1cke_A CK, MSSA, protein (cyti 96.6 0.0014 4.7E-08 62.0 4.2 31 229-259 6-36 (227)
187 2plr_A DTMP kinase, probable t 96.6 0.0024 8.3E-08 59.4 5.8 31 229-259 5-37 (213)
188 2v3c_C SRP54, signal recogniti 96.5 0.0046 1.6E-07 65.2 8.3 58 202-260 73-134 (432)
189 3sr0_A Adenylate kinase; phosp 96.5 0.0015 5.3E-08 61.8 4.2 28 231-258 3-30 (206)
190 2v54_A DTMP kinase, thymidylat 96.5 0.0014 4.9E-08 60.8 3.9 33 229-261 5-38 (204)
191 2fz4_A DNA repair protein RAD2 96.5 0.0069 2.4E-07 58.3 8.9 33 230-262 110-142 (237)
192 3ake_A Cytidylate kinase; CMP 96.5 0.0017 5.8E-08 60.4 4.4 31 230-260 4-34 (208)
193 2px0_A Flagellar biosynthesis 96.5 0.021 7.2E-07 57.0 12.3 58 201-261 80-142 (296)
194 3r20_A Cytidylate kinase; stru 96.5 0.002 6.7E-08 62.3 4.5 31 229-259 10-40 (233)
195 2if2_A Dephospho-COA kinase; a 96.5 0.0017 5.7E-08 60.5 3.9 30 230-260 3-32 (204)
196 1jjv_A Dephospho-COA kinase; P 96.4 0.0017 5.8E-08 60.6 3.8 29 230-259 4-32 (206)
197 1n0w_A DNA repair protein RAD5 96.4 0.0041 1.4E-07 59.1 6.5 28 224-251 20-47 (243)
198 2iut_A DNA translocase FTSK; n 96.4 0.033 1.1E-06 60.4 14.2 43 360-404 376-420 (574)
199 3nwj_A ATSK2; P loop, shikimat 96.4 0.0022 7.4E-08 62.7 4.4 31 229-259 49-79 (250)
200 3a4m_A L-seryl-tRNA(SEC) kinas 96.3 0.0029 9.9E-08 61.8 4.7 32 229-260 5-39 (260)
201 2gxq_A Heat resistant RNA depe 96.3 0.012 4E-07 54.5 8.7 24 229-252 39-63 (207)
202 2wwf_A Thymidilate kinase, put 96.3 0.00098 3.3E-08 62.3 1.1 30 229-258 11-40 (212)
203 3uie_A Adenylyl-sulfate kinase 96.2 0.0042 1.4E-07 57.9 5.2 24 229-252 26-49 (200)
204 4gp7_A Metallophosphoesterase; 96.2 0.0058 2E-07 55.6 6.1 18 229-246 10-27 (171)
205 2grj_A Dephospho-COA kinase; T 96.2 0.0031 1.1E-07 59.0 4.2 31 230-260 14-44 (192)
206 3io5_A Recombination and repai 96.2 0.011 3.7E-07 59.7 8.4 68 224-292 25-124 (333)
207 1g41_A Heat shock protein HSLU 96.2 0.0045 1.5E-07 65.4 5.6 59 344-404 278-346 (444)
208 1qde_A EIF4A, translation init 96.1 0.021 7.3E-07 53.6 9.6 60 189-251 12-75 (224)
209 4a74_A DNA repair and recombin 96.1 0.0084 2.9E-07 56.4 6.7 29 224-252 21-49 (231)
210 4e22_A Cytidylate kinase; P-lo 96.1 0.0038 1.3E-07 60.7 4.3 31 229-259 28-58 (252)
211 2bdt_A BH3686; alpha-beta prot 96.1 0.0037 1.3E-07 57.5 4.0 25 230-254 4-28 (189)
212 1t6n_A Probable ATP-dependent 96.1 0.034 1.2E-06 52.0 10.9 59 189-250 12-73 (220)
213 1uf9_A TT1252 protein; P-loop, 96.1 0.0039 1.3E-07 57.6 4.2 31 229-260 9-39 (203)
214 2h92_A Cytidylate kinase; ross 96.1 0.0044 1.5E-07 58.3 4.5 31 229-259 4-34 (219)
215 1vht_A Dephospho-COA kinase; s 96.0 0.0042 1.4E-07 58.5 4.1 30 229-259 5-34 (218)
216 1nn5_A Similar to deoxythymidy 96.0 0.0018 6.3E-08 60.5 1.4 25 229-253 10-34 (215)
217 2qor_A Guanylate kinase; phosp 96.0 0.0043 1.5E-07 58.0 4.0 28 226-253 10-37 (204)
218 1q3t_A Cytidylate kinase; nucl 96.0 0.0056 1.9E-07 58.7 4.8 30 230-259 18-47 (236)
219 1w4r_A Thymidine kinase; type 95.9 0.011 3.6E-07 55.5 6.4 32 230-261 22-56 (195)
220 3zvl_A Bifunctional polynucleo 95.9 0.0056 1.9E-07 64.2 5.0 32 228-259 258-289 (416)
221 2dr3_A UPF0273 protein PH0284; 95.8 0.0072 2.4E-07 57.5 4.8 39 224-262 19-60 (247)
222 3fdi_A Uncharacterized protein 95.8 0.005 1.7E-07 57.9 3.6 30 229-258 7-36 (201)
223 1ltq_A Polynucleotide kinase; 95.8 0.0045 1.5E-07 61.3 3.3 29 229-257 3-32 (301)
224 2ius_A DNA translocase FTSK; n 95.8 0.047 1.6E-06 58.6 11.5 42 361-404 331-374 (512)
225 1uj2_A Uridine-cytidine kinase 95.8 0.0045 1.5E-07 60.0 3.2 28 229-256 23-50 (252)
226 1kgd_A CASK, peripheral plasma 95.8 0.0062 2.1E-07 55.8 4.0 25 229-253 6-30 (180)
227 3a8t_A Adenylate isopentenyltr 95.7 0.0037 1.3E-07 63.6 2.6 35 229-263 41-75 (339)
228 2qmh_A HPR kinase/phosphorylas 95.7 0.0054 1.8E-07 57.8 3.4 30 228-258 34-63 (205)
229 1vec_A ATP-dependent RNA helic 95.7 0.032 1.1E-06 51.5 8.6 17 229-245 41-57 (206)
230 2j41_A Guanylate kinase; GMP, 95.7 0.006 2E-07 56.5 3.5 24 229-252 7-30 (207)
231 2yvu_A Probable adenylyl-sulfa 95.6 0.0059 2E-07 56.0 3.3 25 229-253 14-38 (186)
232 2qt1_A Nicotinamide riboside k 95.6 0.0056 1.9E-07 57.1 3.2 29 230-258 23-52 (207)
233 3foz_A TRNA delta(2)-isopenten 95.6 0.0075 2.6E-07 60.6 4.1 33 228-260 10-42 (316)
234 2zts_A Putative uncharacterize 95.5 0.012 4E-07 56.1 5.2 39 224-262 26-68 (251)
235 1rz3_A Hypothetical protein rb 95.5 0.024 8.3E-07 52.8 7.2 34 229-262 23-59 (201)
236 2oap_1 GSPE-2, type II secreti 95.5 0.0099 3.4E-07 64.0 5.1 61 229-289 261-343 (511)
237 3b6e_A Interferon-induced heli 95.5 0.021 7.1E-07 52.9 6.8 24 229-252 49-72 (216)
238 3c8u_A Fructokinase; YP_612366 95.5 0.015 5.1E-07 54.5 5.6 25 229-253 23-47 (208)
239 2f6r_A COA synthase, bifunctio 95.5 0.0077 2.6E-07 59.6 3.7 30 229-259 76-105 (281)
240 3tau_A Guanylate kinase, GMP k 95.5 0.0076 2.6E-07 56.6 3.5 26 229-254 9-34 (208)
241 1m7g_A Adenylylsulfate kinase; 95.5 0.01 3.6E-07 55.6 4.4 32 229-260 26-61 (211)
242 3d3q_A TRNA delta(2)-isopenten 95.5 0.0071 2.4E-07 61.6 3.4 32 229-260 8-39 (340)
243 1ex7_A Guanylate kinase; subst 95.4 0.0098 3.3E-07 55.4 4.1 27 229-255 2-28 (186)
244 3aji_B S6C, proteasome (prosom 95.4 0.011 3.9E-07 47.1 3.9 46 395-441 2-47 (83)
245 3tr0_A Guanylate kinase, GMP k 95.4 0.0077 2.6E-07 55.7 3.4 25 229-253 8-32 (205)
246 1hv8_A Putative ATP-dependent 95.4 0.049 1.7E-06 54.5 9.6 58 191-251 6-67 (367)
247 4eaq_A DTMP kinase, thymidylat 95.4 0.0089 3.1E-07 57.3 3.8 29 230-258 28-58 (229)
248 3b9q_A Chloroplast SRP recepto 95.4 0.016 5.5E-07 58.1 5.6 53 200-252 70-124 (302)
249 1kao_A RAP2A; GTP-binding prot 95.3 0.05 1.7E-06 47.5 8.1 22 230-251 5-26 (167)
250 3kl4_A SRP54, signal recogniti 95.2 0.023 7.9E-07 59.8 6.6 60 200-260 69-132 (433)
251 3fe2_A Probable ATP-dependent 95.2 0.064 2.2E-06 51.2 9.2 54 189-245 27-83 (242)
252 2pt7_A CAG-ALFA; ATPase, prote 95.2 0.011 3.8E-07 59.9 3.9 62 229-290 172-251 (330)
253 3a00_A Guanylate kinase, GMP k 95.2 0.012 3.9E-07 54.2 3.6 25 229-253 2-26 (186)
254 2xau_A PRE-mRNA-splicing facto 95.2 0.035 1.2E-06 62.8 8.2 23 229-251 110-132 (773)
255 3dm5_A SRP54, signal recogniti 95.2 0.025 8.7E-07 59.6 6.6 60 200-260 73-135 (443)
256 1gtv_A TMK, thymidylate kinase 95.1 0.0047 1.6E-07 57.7 0.8 25 231-255 3-27 (214)
257 3gmt_A Adenylate kinase; ssgci 95.1 0.011 3.7E-07 57.0 3.3 30 230-259 10-39 (230)
258 3lda_A DNA repair protein RAD5 95.1 0.029 9.9E-07 58.5 6.8 28 224-251 174-201 (400)
259 1lvg_A Guanylate kinase, GMP k 95.1 0.011 3.9E-07 55.0 3.4 26 228-253 4-29 (198)
260 1vt4_I APAF-1 related killer D 95.1 0.067 2.3E-06 62.0 10.1 55 197-263 131-191 (1221)
261 3asz_A Uridine kinase; cytidin 95.1 0.011 3.7E-07 55.2 3.1 24 230-253 8-31 (211)
262 2v9p_A Replication protein E1; 95.1 0.014 4.9E-07 58.5 4.2 30 224-253 122-151 (305)
263 2og2_A Putative signal recogni 95.0 0.021 7.3E-07 58.6 5.5 53 200-252 127-181 (359)
264 3exa_A TRNA delta(2)-isopenten 95.0 0.012 4E-07 59.3 3.3 32 229-260 4-35 (322)
265 3thx_B DNA mismatch repair pro 95.0 0.045 1.5E-06 62.9 8.6 64 228-291 673-764 (918)
266 3hdt_A Putative kinase; struct 95.0 0.012 4.2E-07 56.3 3.3 30 229-258 15-44 (223)
267 1vma_A Cell division protein F 95.0 0.021 7.3E-07 57.3 5.2 58 202-260 79-139 (306)
268 1q0u_A Bstdead; DEAD protein, 94.9 0.071 2.4E-06 49.9 8.4 52 191-245 4-58 (219)
269 1cr0_A DNA primase/helicase; R 94.9 0.014 4.9E-07 57.6 3.7 38 224-261 31-72 (296)
270 1x6v_B Bifunctional 3'-phospho 94.9 0.017 5.8E-07 63.6 4.5 32 229-260 53-87 (630)
271 2oxc_A Probable ATP-dependent 94.8 0.072 2.5E-06 50.3 8.4 53 189-244 22-77 (230)
272 1wb9_A DNA mismatch repair pro 94.8 0.08 2.7E-06 60.0 9.9 62 229-290 608-697 (800)
273 2pl3_A Probable ATP-dependent 94.8 0.077 2.6E-06 50.2 8.5 54 189-245 23-79 (236)
274 2yhs_A FTSY, cell division pro 94.8 0.024 8.4E-07 60.5 5.3 24 229-252 294-317 (503)
275 1htw_A HI0065; nucleotide-bind 94.8 0.021 7.3E-07 51.5 4.2 23 230-252 35-57 (158)
276 3ney_A 55 kDa erythrocyte memb 94.8 0.02 6.9E-07 53.7 4.1 25 229-253 20-44 (197)
277 1z0j_A RAB-22, RAS-related pro 94.7 0.033 1.1E-06 49.0 5.4 23 230-252 8-30 (170)
278 1xti_A Probable ATP-dependent 94.7 0.18 6.3E-06 50.9 11.6 56 190-248 7-65 (391)
279 1z6g_A Guanylate kinase; struc 94.7 0.019 6.4E-07 54.4 3.8 24 229-252 24-47 (218)
280 3pey_A ATP-dependent RNA helic 94.7 0.24 8.2E-06 49.9 12.3 53 191-246 5-62 (395)
281 1znw_A Guanylate kinase, GMP k 94.6 0.022 7.5E-07 53.2 3.9 25 229-253 21-45 (207)
282 1c9k_A COBU, adenosylcobinamid 94.6 0.034 1.2E-06 51.4 5.0 33 231-264 2-34 (180)
283 2gk6_A Regulator of nonsense t 94.5 0.018 6.1E-07 63.5 3.6 34 229-262 196-233 (624)
284 3tqf_A HPR(Ser) kinase; transf 94.5 0.018 6.2E-07 52.9 2.9 24 228-251 16-39 (181)
285 3thx_A DNA mismatch repair pro 94.5 0.081 2.8E-06 60.9 9.0 63 229-291 663-753 (934)
286 1s2m_A Putative ATP-dependent 94.4 0.17 5.8E-06 51.5 10.6 56 188-246 18-76 (400)
287 3eph_A TRNA isopentenyltransfe 94.4 0.019 6.4E-07 59.8 3.2 31 229-259 3-33 (409)
288 3bh0_A DNAB-like replicative h 94.4 0.065 2.2E-06 53.8 7.1 39 224-262 64-105 (315)
289 4edh_A DTMP kinase, thymidylat 94.4 0.021 7.2E-07 54.2 3.2 30 230-259 8-40 (213)
290 1s96_A Guanylate kinase, GMP k 94.3 0.026 8.9E-07 53.7 3.8 28 226-253 14-41 (219)
291 2eyu_A Twitching motility prot 94.3 0.029 1E-06 54.9 4.2 24 229-252 26-49 (261)
292 1r8s_A ADP-ribosylation factor 94.3 0.096 3.3E-06 45.8 7.3 21 231-251 3-23 (164)
293 1np6_A Molybdopterin-guanine d 94.3 0.027 9.4E-07 51.7 3.7 25 228-252 6-30 (174)
294 3e70_C DPA, signal recognition 94.2 0.058 2E-06 54.6 6.4 53 200-252 97-153 (328)
295 2ewv_A Twitching motility prot 94.2 0.027 9.1E-07 58.1 3.9 26 228-253 136-161 (372)
296 4dsu_A GTPase KRAS, isoform 2B 94.2 0.075 2.6E-06 47.7 6.5 23 230-252 6-28 (189)
297 1zu4_A FTSY; GTPase, signal re 94.2 0.039 1.3E-06 55.6 5.0 59 202-260 74-140 (320)
298 3fmo_B ATP-dependent RNA helic 94.1 0.61 2.1E-05 46.1 13.6 54 188-244 89-147 (300)
299 1p9r_A General secretion pathw 94.1 0.073 2.5E-06 55.7 7.0 31 230-260 169-202 (418)
300 2ce2_X GTPase HRAS; signaling 94.1 0.058 2E-06 47.0 5.3 23 230-252 5-27 (166)
301 1sky_E F1-ATPase, F1-ATP synth 94.1 0.055 1.9E-06 57.4 5.9 23 230-252 153-175 (473)
302 1x3s_A RAS-related protein RAB 94.1 0.12 4.1E-06 46.6 7.6 23 229-251 16-38 (195)
303 2bov_A RAla, RAS-related prote 94.0 0.14 4.8E-06 46.7 8.2 23 229-251 15-37 (206)
304 2efe_B Small GTP-binding prote 94.0 0.069 2.3E-06 47.7 5.9 23 229-251 13-35 (181)
305 3tkl_A RAS-related protein RAB 94.0 0.06 2E-06 48.8 5.5 24 229-252 17-40 (196)
306 2axn_A 6-phosphofructo-2-kinas 94.0 0.037 1.3E-06 59.6 4.7 32 229-260 36-70 (520)
307 1u8z_A RAS-related protein RAL 94.0 0.07 2.4E-06 46.6 5.8 23 229-251 5-27 (168)
308 2j37_W Signal recognition part 94.0 0.07 2.4E-06 57.2 6.7 59 201-261 74-137 (504)
309 2ged_A SR-beta, signal recogni 94.0 0.049 1.7E-06 49.5 4.7 26 227-252 47-72 (193)
310 3iuy_A Probable ATP-dependent 93.9 0.2 7E-06 46.9 9.3 17 229-245 58-74 (228)
311 2jeo_A Uridine-cytidine kinase 93.9 0.035 1.2E-06 53.3 3.9 25 231-255 28-52 (245)
312 1z0f_A RAB14, member RAS oncog 93.9 0.08 2.8E-06 46.9 6.0 24 229-252 16-39 (179)
313 1odf_A YGR205W, hypothetical 3 93.9 0.043 1.5E-06 54.5 4.6 26 229-254 32-57 (290)
314 3kta_A Chromosome segregation 93.9 0.031 1.1E-06 50.7 3.3 24 230-253 28-51 (182)
315 3ber_A Probable ATP-dependent 93.8 0.16 5.4E-06 48.9 8.3 52 191-245 43-97 (249)
316 1xjc_A MOBB protein homolog; s 93.7 0.06 2E-06 49.2 4.8 32 229-260 5-39 (169)
317 2a9k_A RAS-related protein RAL 93.7 0.091 3.1E-06 46.9 6.1 23 229-251 19-41 (187)
318 3lnc_A Guanylate kinase, GMP k 93.7 0.022 7.4E-07 54.1 1.9 25 229-253 28-53 (231)
319 2j0s_A ATP-dependent RNA helic 93.7 0.45 1.5E-05 48.5 12.0 54 190-246 36-92 (410)
320 2erx_A GTP-binding protein DI- 93.7 0.081 2.8E-06 46.5 5.5 21 230-250 5-25 (172)
321 2wjy_A Regulator of nonsense t 93.6 0.034 1.2E-06 63.1 3.6 23 230-252 373-395 (800)
322 3fmp_B ATP-dependent RNA helic 93.6 0.5 1.7E-05 49.6 12.6 53 189-244 90-147 (479)
323 1m8p_A Sulfate adenylyltransfe 93.6 0.041 1.4E-06 60.0 4.1 31 230-260 398-432 (573)
324 2r6a_A DNAB helicase, replicat 93.6 0.065 2.2E-06 56.6 5.5 39 224-262 199-241 (454)
325 1a7j_A Phosphoribulokinase; tr 93.5 0.032 1.1E-06 55.4 2.9 36 230-265 7-45 (290)
326 1w36_D RECD, exodeoxyribonucle 93.5 0.037 1.3E-06 60.8 3.6 24 229-252 165-188 (608)
327 3v9p_A DTMP kinase, thymidylat 93.5 0.054 1.8E-06 51.9 4.3 30 231-260 28-64 (227)
328 1p5z_B DCK, deoxycytidine kina 93.5 0.019 6.5E-07 55.8 1.0 24 230-253 26-49 (263)
329 3tqc_A Pantothenate kinase; bi 93.4 0.089 3E-06 53.1 5.9 24 230-253 94-117 (321)
330 2xxa_A Signal recognition part 93.4 0.13 4.4E-06 54.1 7.4 62 201-262 73-138 (433)
331 2ocp_A DGK, deoxyguanosine kin 93.4 0.05 1.7E-06 52.0 3.9 25 229-253 3-27 (241)
332 3t1o_A Gliding protein MGLA; G 93.3 0.13 4.5E-06 46.3 6.6 24 229-252 15-38 (198)
333 2dyk_A GTP-binding protein; GT 93.3 0.045 1.5E-06 47.8 3.2 22 230-251 3-24 (161)
334 2q6t_A DNAB replication FORK h 93.3 0.074 2.5E-06 56.0 5.3 39 224-262 196-238 (444)
335 1nrj_B SR-beta, signal recogni 93.3 0.044 1.5E-06 51.0 3.2 24 229-252 13-36 (218)
336 2f9l_A RAB11B, member RAS onco 93.3 0.045 1.5E-06 50.3 3.3 23 230-252 7-29 (199)
337 2xzl_A ATP-dependent helicase 93.2 0.04 1.4E-06 62.5 3.3 33 230-262 377-413 (802)
338 1bif_A 6-phosphofructo-2-kinas 93.2 0.026 8.7E-07 60.0 1.6 26 229-254 40-65 (469)
339 1rj9_A FTSY, signal recognitio 93.2 0.059 2E-06 53.9 4.2 25 228-252 102-126 (304)
340 1z2a_A RAS-related protein RAB 93.1 0.05 1.7E-06 47.8 3.2 23 229-251 6-28 (168)
341 3b85_A Phosphate starvation-in 93.1 0.046 1.6E-06 51.6 3.1 22 230-251 24-45 (208)
342 1oix_A RAS-related protein RAB 93.1 0.045 1.5E-06 50.2 2.9 23 230-252 31-53 (191)
343 1j8m_F SRP54, signal recogniti 93.1 0.13 4.5E-06 51.2 6.5 60 201-262 71-135 (297)
344 3lv8_A DTMP kinase, thymidylat 93.0 0.035 1.2E-06 53.5 2.2 23 230-252 29-51 (236)
345 3aez_A Pantothenate kinase; tr 93.0 0.05 1.7E-06 54.7 3.3 24 230-253 92-115 (312)
346 2f7s_A C25KG, RAS-related prot 93.0 0.19 6.7E-06 46.4 7.2 23 229-251 26-48 (217)
347 3tmk_A Thymidylate kinase; pho 93.0 0.078 2.7E-06 50.4 4.5 30 230-259 7-36 (216)
348 4i1u_A Dephospho-COA kinase; s 92.9 0.075 2.6E-06 50.3 4.3 31 230-261 11-41 (210)
349 3eiq_A Eukaryotic initiation f 92.9 1 3.6E-05 45.6 13.3 53 190-245 39-94 (414)
350 1lw7_A Transcriptional regulat 92.9 0.048 1.6E-06 55.8 3.1 28 228-255 170-197 (365)
351 1ek0_A Protein (GTP-binding pr 92.9 0.058 2E-06 47.4 3.2 23 230-252 5-27 (170)
352 3ice_A Transcription terminati 92.7 0.18 6.1E-06 52.2 7.0 23 230-252 176-198 (422)
353 2zj8_A DNA helicase, putative 92.7 0.37 1.3E-05 53.7 10.3 18 228-245 39-56 (720)
354 3vkw_A Replicase large subunit 92.7 0.065 2.2E-06 56.4 3.8 24 228-251 161-184 (446)
355 4a1f_A DNAB helicase, replicat 92.7 0.099 3.4E-06 53.1 5.1 38 224-261 42-82 (338)
356 1wms_A RAB-9, RAB9, RAS-relate 92.7 0.062 2.1E-06 47.7 3.2 23 229-251 8-30 (177)
357 2onk_A Molybdate/tungstate ABC 92.6 0.051 1.8E-06 52.4 2.7 26 229-254 25-50 (240)
358 1g16_A RAS-related protein SEC 92.6 0.06 2E-06 47.3 3.0 23 229-251 4-26 (170)
359 1z08_A RAS-related protein RAB 92.6 0.065 2.2E-06 47.2 3.2 23 229-251 7-29 (170)
360 1sq5_A Pantothenate kinase; P- 92.6 0.058 2E-06 53.9 3.1 24 230-253 82-105 (308)
361 2wji_A Ferrous iron transport 92.6 0.063 2.1E-06 47.7 3.1 22 230-251 5-26 (165)
362 4f4c_A Multidrug resistance pr 92.6 0.25 8.4E-06 59.2 9.0 28 226-253 442-469 (1321)
363 2qe7_A ATP synthase subunit al 92.5 0.18 6.2E-06 53.7 7.0 29 231-259 165-194 (502)
364 1r2q_A RAS-related protein RAB 92.5 0.068 2.3E-06 46.9 3.2 23 229-251 7-29 (170)
365 2hup_A RAS-related protein RAB 92.5 0.18 6E-06 46.4 6.2 23 229-251 30-52 (201)
366 1ky3_A GTP-binding protein YPT 92.5 0.068 2.3E-06 47.5 3.2 24 229-252 9-32 (182)
367 1f2t_A RAD50 ABC-ATPase; DNA d 92.5 0.061 2.1E-06 47.8 2.8 23 230-252 25-47 (149)
368 2pcj_A ABC transporter, lipopr 92.5 0.042 1.4E-06 52.4 1.9 26 230-255 32-57 (224)
369 2nzj_A GTP-binding protein REM 92.5 0.065 2.2E-06 47.4 3.1 23 229-251 5-27 (175)
370 2h57_A ADP-ribosylation factor 92.5 0.06 2E-06 48.9 2.8 24 229-252 22-45 (190)
371 2dpy_A FLII, flagellum-specifi 92.4 0.12 4E-06 54.5 5.4 31 230-260 159-189 (438)
372 3tif_A Uncharacterized ABC tra 92.4 0.044 1.5E-06 52.7 1.9 27 229-255 32-58 (235)
373 3sop_A Neuronal-specific septi 92.4 0.061 2.1E-06 52.8 3.0 25 230-254 4-28 (270)
374 1fzq_A ADP-ribosylation factor 92.4 0.12 4.2E-06 46.6 4.9 23 229-251 17-39 (181)
375 1c1y_A RAS-related protein RAP 92.4 0.074 2.5E-06 46.6 3.2 22 230-251 5-26 (167)
376 1sgw_A Putative ABC transporte 92.3 0.052 1.8E-06 51.5 2.3 26 230-255 37-62 (214)
377 2wsm_A Hydrogenase expression/ 92.3 0.1 3.5E-06 48.6 4.4 25 229-253 31-55 (221)
378 2ffh_A Protein (FFH); SRP54, s 92.3 0.21 7.3E-06 52.3 7.2 59 201-261 73-134 (425)
379 3p32_A Probable GTPase RV1496/ 92.3 0.11 3.7E-06 53.0 4.8 32 229-260 80-114 (355)
380 2cbz_A Multidrug resistance-as 92.3 0.05 1.7E-06 52.4 2.1 24 229-252 32-55 (237)
381 3bc1_A RAS-related protein RAB 92.3 0.075 2.6E-06 47.8 3.2 23 229-251 12-34 (195)
382 1q57_A DNA primase/helicase; d 92.3 0.087 3E-06 56.3 4.2 39 224-262 238-280 (503)
383 4tmk_A Protein (thymidylate ki 92.3 0.052 1.8E-06 51.4 2.2 23 230-252 5-27 (213)
384 2zej_A Dardarin, leucine-rich 92.2 0.061 2.1E-06 48.7 2.6 21 230-250 4-24 (184)
385 3bgw_A DNAB-like replicative h 92.2 0.11 3.8E-06 54.8 4.8 39 224-262 193-234 (444)
386 2y8e_A RAB-protein 6, GH09086P 92.2 0.072 2.5E-06 47.3 3.0 22 230-251 16-37 (179)
387 2obl_A ESCN; ATPase, hydrolase 92.2 0.11 3.7E-06 53.0 4.6 31 230-260 73-103 (347)
388 3q85_A GTP-binding protein REM 92.2 0.076 2.6E-06 46.8 3.1 21 230-250 4-24 (169)
389 1upt_A ARL1, ADP-ribosylation 92.2 0.081 2.8E-06 46.6 3.2 23 229-251 8-30 (171)
390 2hxs_A RAB-26, RAS-related pro 92.1 0.071 2.4E-06 47.4 2.8 23 229-251 7-29 (178)
391 2wjg_A FEOB, ferrous iron tran 92.1 0.069 2.4E-06 48.1 2.7 23 229-251 8-30 (188)
392 1g6h_A High-affinity branched- 92.1 0.058 2E-06 52.5 2.3 26 230-255 35-60 (257)
393 3clv_A RAB5 protein, putative; 92.0 0.082 2.8E-06 47.8 3.2 23 229-251 8-30 (208)
394 1b0u_A Histidine permease; ABC 92.0 0.058 2E-06 52.7 2.3 26 230-255 34-59 (262)
395 2oil_A CATX-8, RAS-related pro 92.0 0.086 2.9E-06 47.8 3.3 23 229-251 26-48 (193)
396 2pze_A Cystic fibrosis transme 92.0 0.06 2.1E-06 51.4 2.3 25 229-253 35-59 (229)
397 2d2e_A SUFC protein; ABC-ATPas 92.0 0.069 2.4E-06 51.7 2.7 22 230-251 31-52 (250)
398 3ly5_A ATP-dependent RNA helic 91.9 0.51 1.7E-05 45.6 8.9 17 229-245 92-108 (262)
399 2il1_A RAB12; G-protein, GDP, 91.9 0.14 4.9E-06 46.6 4.7 22 229-250 27-48 (192)
400 3q72_A GTP-binding protein RAD 91.9 0.073 2.5E-06 46.7 2.6 21 230-250 4-24 (166)
401 1g8f_A Sulfate adenylyltransfe 91.9 0.077 2.6E-06 56.9 3.2 26 229-254 396-421 (511)
402 1mv5_A LMRA, multidrug resista 91.9 0.062 2.1E-06 51.8 2.3 25 229-253 29-53 (243)
403 1tf7_A KAIC; homohexamer, hexa 91.9 0.075 2.6E-06 57.2 3.1 29 224-252 277-305 (525)
404 2qi9_C Vitamin B12 import ATP- 91.8 0.056 1.9E-06 52.5 1.9 26 230-255 28-53 (249)
405 2o8b_B DNA mismatch repair pro 91.8 0.22 7.7E-06 57.8 7.2 21 229-249 790-810 (1022)
406 2atv_A RERG, RAS-like estrogen 91.8 0.1 3.4E-06 47.7 3.5 23 229-251 29-51 (196)
407 2ff7_A Alpha-hemolysin translo 91.8 0.058 2E-06 52.2 1.9 26 230-255 37-62 (247)
408 2zu0_C Probable ATP-dependent 91.8 0.074 2.5E-06 52.1 2.7 23 230-252 48-70 (267)
409 1m7b_A RND3/RHOE small GTP-bin 91.7 0.087 3E-06 47.5 3.0 23 229-251 8-30 (184)
410 2olj_A Amino acid ABC transpor 91.7 0.058 2E-06 52.8 1.9 26 230-255 52-77 (263)
411 2bme_A RAB4A, RAS-related prot 91.7 0.087 3E-06 47.3 3.0 23 229-251 11-33 (186)
412 2fn4_A P23, RAS-related protei 91.7 0.087 3E-06 46.8 2.9 23 229-251 10-32 (181)
413 2db3_A ATP-dependent RNA helic 91.7 0.96 3.3E-05 47.0 11.4 52 190-244 55-109 (434)
414 3con_A GTPase NRAS; structural 91.7 0.096 3.3E-06 47.3 3.2 23 230-252 23-45 (190)
415 2gza_A Type IV secretion syste 91.7 0.07 2.4E-06 54.6 2.6 25 229-253 176-200 (361)
416 1ji0_A ABC transporter; ATP bi 91.7 0.068 2.3E-06 51.5 2.3 26 230-255 34-59 (240)
417 3fvq_A Fe(3+) IONS import ATP- 91.7 0.071 2.4E-06 54.7 2.5 25 230-254 32-56 (359)
418 1tq4_A IIGP1, interferon-induc 91.7 0.13 4.3E-06 53.8 4.5 23 230-252 71-93 (413)
419 2qm8_A GTPase/ATPase; G protei 91.6 0.09 3.1E-06 53.3 3.3 23 230-252 57-79 (337)
420 3gfo_A Cobalt import ATP-bindi 91.6 0.06 2.1E-06 53.1 1.9 26 230-255 36-61 (275)
421 2lkc_A Translation initiation 91.6 0.11 3.7E-06 46.2 3.4 23 228-250 8-30 (178)
422 2www_A Methylmalonic aciduria 91.6 0.22 7.6E-06 50.6 6.1 23 230-252 76-98 (349)
423 3ld9_A DTMP kinase, thymidylat 91.6 0.1 3.4E-06 49.9 3.3 29 230-258 23-55 (223)
424 2r9v_A ATP synthase subunit al 91.6 0.17 5.8E-06 54.0 5.4 29 231-259 178-207 (515)
425 1svi_A GTP-binding protein YSX 91.5 0.11 3.7E-06 47.1 3.4 24 228-251 23-46 (195)
426 2g6b_A RAS-related protein RAB 91.5 0.11 3.6E-06 46.3 3.2 23 229-251 11-33 (180)
427 2gf9_A RAS-related protein RAB 91.5 0.1 3.6E-06 47.2 3.2 24 229-252 23-46 (189)
428 2f1r_A Molybdopterin-guanine d 91.5 0.053 1.8E-06 49.5 1.2 25 229-253 3-27 (171)
429 2it1_A 362AA long hypothetical 91.5 0.083 2.9E-06 54.2 2.8 24 230-253 31-54 (362)
430 2gj8_A MNME, tRNA modification 91.5 0.081 2.8E-06 47.5 2.4 22 230-251 6-27 (172)
431 1mh1_A RAC1; GTP-binding, GTPa 91.5 0.11 3.6E-06 46.5 3.2 22 230-251 7-28 (186)
432 2ihy_A ABC transporter, ATP-bi 91.5 0.073 2.5E-06 52.6 2.3 26 230-255 49-74 (279)
433 2ghi_A Transport protein; mult 91.4 0.071 2.4E-06 52.0 2.2 25 229-253 47-71 (260)
434 3tw8_B RAS-related protein RAB 91.4 0.094 3.2E-06 46.6 2.9 22 229-250 10-31 (181)
435 3kkq_A RAS-related protein M-R 91.4 0.11 3.7E-06 46.6 3.2 23 229-251 19-41 (183)
436 2yyz_A Sugar ABC transporter, 91.4 0.086 2.9E-06 54.1 2.8 25 230-254 31-55 (359)
437 1vpl_A ABC transporter, ATP-bi 91.4 0.075 2.6E-06 51.8 2.3 26 230-255 43-68 (256)
438 1yrb_A ATP(GTP)binding protein 91.4 0.17 5.8E-06 48.5 4.8 32 229-260 15-48 (262)
439 2dzn_B 26S protease regulatory 91.4 0.033 1.1E-06 44.4 -0.3 44 397-441 1-44 (82)
440 1fx0_A ATP synthase alpha chai 91.4 0.18 6.1E-06 53.8 5.3 29 231-259 166-195 (507)
441 1z47_A CYSA, putative ABC-tran 91.4 0.094 3.2E-06 53.7 3.1 25 230-254 43-67 (355)
442 2nq2_C Hypothetical ABC transp 91.3 0.066 2.3E-06 52.0 1.8 24 230-253 33-56 (253)
443 2ixe_A Antigen peptide transpo 91.3 0.074 2.5E-06 52.2 2.2 27 229-255 46-72 (271)
444 1v43_A Sugar-binding transport 91.3 0.087 3E-06 54.3 2.8 25 230-254 39-63 (372)
445 3rlf_A Maltose/maltodextrin im 91.3 0.088 3E-06 54.4 2.8 25 230-254 31-55 (381)
446 1g29_1 MALK, maltose transport 91.3 0.09 3.1E-06 54.2 2.8 24 230-253 31-54 (372)
447 1ewq_A DNA mismatch repair pro 91.3 0.21 7.1E-06 56.3 6.0 24 228-251 576-599 (765)
448 1tf7_A KAIC; homohexamer, hexa 91.2 0.094 3.2E-06 56.4 3.1 28 225-252 36-65 (525)
449 3bwd_D RAC-like GTP-binding pr 91.2 0.12 4E-06 46.1 3.2 23 229-251 9-31 (182)
450 1m2o_B GTP-binding protein SAR 91.2 0.1 3.6E-06 47.5 3.0 23 229-251 24-46 (190)
451 3fho_A ATP-dependent RNA helic 91.1 0.85 2.9E-05 48.5 10.4 24 229-252 159-183 (508)
452 2yz2_A Putative ABC transporte 91.1 0.081 2.8E-06 51.8 2.2 25 230-254 35-59 (266)
453 2cxx_A Probable GTP-binding pr 91.1 0.099 3.4E-06 47.0 2.7 22 230-251 3-24 (190)
454 1z06_A RAS-related protein RAB 91.1 0.12 4.1E-06 46.8 3.2 23 229-251 21-43 (189)
455 1zd9_A ADP-ribosylation factor 91.1 0.12 4.1E-06 46.8 3.2 22 230-251 24-45 (188)
456 3c5c_A RAS-like protein 12; GD 91.1 0.12 4.1E-06 46.9 3.2 22 230-251 23-44 (187)
457 1vg8_A RAS-related protein RAB 91.1 0.12 4.1E-06 47.3 3.2 24 229-252 9-32 (207)
458 2pjz_A Hypothetical protein ST 91.0 0.075 2.6E-06 52.0 1.9 24 229-252 31-54 (263)
459 2a5j_A RAS-related protein RAB 91.0 0.12 4.3E-06 46.8 3.3 22 230-251 23-44 (191)
460 3dz8_A RAS-related protein RAB 91.0 0.11 3.8E-06 47.1 3.0 23 230-252 25-47 (191)
461 3oaa_A ATP synthase subunit al 91.0 0.28 9.4E-06 52.3 6.3 29 231-259 165-194 (513)
462 4dkx_A RAS-related protein RAB 91.0 0.16 5.6E-06 47.9 4.1 21 230-250 15-35 (216)
463 2fg5_A RAB-22B, RAS-related pr 90.9 0.11 3.9E-06 47.2 2.9 23 229-251 24-46 (192)
464 2p5s_A RAS and EF-hand domain 90.9 0.13 4.3E-06 47.1 3.3 23 229-251 29-51 (199)
465 1ls1_A Signal recognition part 90.9 0.25 8.4E-06 49.1 5.6 33 228-260 98-133 (295)
466 2iwr_A Centaurin gamma 1; ANK 90.9 0.094 3.2E-06 46.7 2.3 22 230-251 9-30 (178)
467 3cph_A RAS-related protein SEC 90.9 0.13 4.3E-06 47.3 3.2 23 229-251 21-43 (213)
468 4hlc_A DTMP kinase, thymidylat 90.9 0.21 7.1E-06 46.9 4.7 29 231-259 5-35 (205)
469 3t5g_A GTP-binding protein RHE 90.9 0.12 4.1E-06 46.2 3.0 22 229-250 7-28 (181)
470 3ihw_A Centg3; RAS, centaurin, 90.9 0.13 4.4E-06 46.7 3.2 22 230-251 22-43 (184)
471 3reg_A RHO-like small GTPase; 90.9 0.13 4.5E-06 46.7 3.2 24 229-252 24-47 (194)
472 4g1u_C Hemin import ATP-bindin 90.8 0.098 3.4E-06 51.2 2.5 25 230-254 39-63 (266)
473 2bcg_Y Protein YP2, GTP-bindin 90.8 0.12 4E-06 47.5 3.0 23 229-251 9-31 (206)
474 1zbd_A Rabphilin-3A; G protein 90.8 0.11 3.8E-06 47.5 2.7 23 229-251 9-31 (203)
475 3cr8_A Sulfate adenylyltranfer 90.8 0.078 2.7E-06 57.5 1.9 24 230-253 371-394 (552)
476 3pqc_A Probable GTP-binding pr 90.7 0.12 4.2E-06 46.5 2.9 23 229-251 24-46 (195)
477 1knx_A Probable HPR(Ser) kinas 90.7 0.11 3.8E-06 52.1 2.8 29 228-257 147-175 (312)
478 2orv_A Thymidine kinase; TP4A 90.7 1.3 4.6E-05 42.3 10.2 31 230-260 21-54 (234)
479 1ko7_A HPR kinase/phosphatase; 90.7 0.15 5.1E-06 51.2 3.7 27 228-255 144-170 (314)
480 2hf9_A Probable hydrogenase ni 90.7 0.13 4.3E-06 48.1 3.0 24 229-252 39-62 (226)
481 3d31_A Sulfate/molybdate ABC t 90.7 0.078 2.7E-06 54.1 1.7 25 230-254 28-52 (348)
482 3k53_A Ferrous iron transport 90.6 0.1 3.4E-06 50.9 2.4 23 229-251 4-26 (271)
483 3oes_A GTPase rhebl1; small GT 90.6 0.13 4.3E-06 47.2 3.0 24 229-252 25-48 (201)
484 2zpa_A Uncharacterized protein 90.6 1.1 3.8E-05 49.4 10.8 61 230-291 194-267 (671)
485 1pui_A ENGB, probable GTP-bind 90.6 0.056 1.9E-06 49.8 0.4 22 230-251 28-49 (210)
486 2b6h_A ADP-ribosylation factor 90.5 0.17 5.8E-06 46.2 3.7 22 229-250 30-51 (192)
487 3qks_A DNA double-strand break 90.5 0.14 4.7E-06 47.8 3.1 25 230-254 25-49 (203)
488 1ksh_A ARF-like protein 2; sma 90.5 0.11 3.6E-06 46.8 2.2 23 229-251 19-41 (186)
489 1xx6_A Thymidine kinase; NESG, 90.3 0.27 9.3E-06 45.6 5.0 31 230-260 10-43 (191)
490 2gf0_A GTP-binding protein DI- 90.3 0.14 4.8E-06 46.4 2.9 23 229-251 9-31 (199)
491 2fu5_C RAS-related protein RAB 90.3 0.091 3.1E-06 47.1 1.6 23 229-251 9-31 (183)
492 2gks_A Bifunctional SAT/APS ki 90.3 0.2 7E-06 54.2 4.6 32 229-260 373-407 (546)
493 2fh5_B SR-beta, signal recogni 90.2 0.16 5.3E-06 47.0 3.2 24 229-252 8-31 (214)
494 1gwn_A RHO-related GTP-binding 90.2 0.14 4.9E-06 47.5 3.0 23 229-251 29-51 (205)
495 1moz_A ARL1, ADP-ribosylation 90.2 0.16 5.3E-06 45.4 3.1 22 228-249 18-39 (183)
496 2rcn_A Probable GTPase ENGC; Y 90.2 0.14 4.8E-06 52.4 3.1 24 230-253 217-240 (358)
497 3lxx_A GTPase IMAP family memb 90.1 0.13 4.5E-06 48.8 2.7 24 229-252 30-53 (239)
498 2npi_A Protein CLP1; CLP1-PCF1 90.1 0.13 4.4E-06 54.6 2.8 24 229-252 139-162 (460)
499 1u0l_A Probable GTPase ENGC; p 90.1 0.11 3.9E-06 51.6 2.3 26 230-255 171-196 (301)
500 1oxx_K GLCV, glucose, ABC tran 90.1 0.077 2.6E-06 54.3 1.0 24 230-253 33-56 (353)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-43 Score=369.12 Aligned_cols=219 Identities=23% Similarity=0.297 Sum_probs=188.0
Q ss_pred cCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCcc
Q 009640 185 VPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKV 264 (530)
Q Consensus 185 ~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~ 264 (530)
+...+..+|++|+|.+++|++|.+.+..++.+|+.|.++|+++++|+|||||||||||+||+|+|++++.+++.++.+.+
T Consensus 139 ~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l 218 (405)
T 4b4t_J 139 VEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAEL 218 (405)
T ss_dssp EECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred ccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHh
Confidence 44567889999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred C------ChHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCC
Q 009640 265 T------DNSELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNN 336 (530)
Q Consensus 265 ~------~~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 336 (530)
. ++..++.+|..+ .+||||||||||+++..+.+ . ..+
T Consensus 219 ~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~------------------~-----------------~~~ 263 (405)
T 4b4t_J 219 VQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVE------------------G-----------------SGG 263 (405)
T ss_dssp SCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSC------------------S-----------------SSG
T ss_pred hccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCC------------------C-----------------CCC
Confidence 4 356689999876 78999999999998521100 0 001
Q ss_pred CCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCccchH
Q 009640 337 GEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHHALF 416 (530)
Q Consensus 337 ~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~ 416 (530)
.+.....++++||+.|||+.+ ..+++||+|||+|+.|||||+||||||++|+|++||.++|..||+.++.........
T Consensus 264 ~~~~~~~~l~~lL~~lDg~~~--~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dv 341 (405)
T 4b4t_J 264 GDSEVQRTMLELLNQLDGFET--SKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGI 341 (405)
T ss_dssp GGGHHHHHHHHHHHHHHTTTC--CCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSC
T ss_pred CcHHHHHHHHHHHHhhhccCC--CCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccC
Confidence 223456789999999999987 478999999999999999999999999999999999999999999999765433122
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHh
Q 009640 417 DVVESCIRAGGALTPAQIGEVLLRN 441 (530)
Q Consensus 417 ~~i~~l~~~~~~~spadi~~~l~~~ 441 (530)
.++.++..+.|||+|||.++|..+
T Consensus 342 -dl~~lA~~t~G~SGADi~~l~~eA 365 (405)
T 4b4t_J 342 -NLRKVAEKMNGCSGADVKGVCTEA 365 (405)
T ss_dssp -CHHHHHHHCCSCCHHHHHHHHHHH
T ss_pred -CHHHHHHHCCCCCHHHHHHHHHHH
Confidence 377888889999999999999754
No 2
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.8e-43 Score=365.95 Aligned_cols=219 Identities=23% Similarity=0.296 Sum_probs=187.9
Q ss_pred cCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCcc
Q 009640 185 VPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKV 264 (530)
Q Consensus 185 ~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~ 264 (530)
+...+..+|++|+|.+++|++|.+.+..|+.+|++|.++|++|++|+|||||||||||+||+|+|++++.+++.++.+++
T Consensus 173 ~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l 252 (437)
T 4b4t_I 173 MDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSEL 252 (437)
T ss_dssp EESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGG
T ss_pred eccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHh
Confidence 44567889999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred C------ChHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCC
Q 009640 265 T------DNSELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNN 336 (530)
Q Consensus 265 ~------~~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 336 (530)
. ++..++.+|..+ .+||||||||||+++. +|... ...
T Consensus 253 ~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~------------------~R~~~-----------------~~~ 297 (437)
T 4b4t_I 253 IQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGT------------------KRYDS-----------------NSG 297 (437)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSC------------------CCSCS-----------------SCS
T ss_pred hhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcc------------------cCCCC-----------------CCC
Confidence 4 345688888866 7899999999999852 11100 002
Q ss_pred CCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCccchH
Q 009640 337 GEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHHALF 416 (530)
Q Consensus 337 ~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~ 416 (530)
.+.....++++||+.|||+.+ .++++||+|||+|+.|||||+||||||++|+|++||.++|..||+.|+.........
T Consensus 298 ~~~~~~~~l~~LL~~lDg~~~--~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dv 375 (437)
T 4b4t_I 298 GEREIQRTMLELLNQLDGFDD--RGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDV 375 (437)
T ss_dssp SCCHHHHHHHHHHHHHHHCCC--SSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCC
T ss_pred ccHHHHHHHHHHHHHhhCcCC--CCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcC
Confidence 233456789999999999976 578999999999999999999999999999999999999999999999865433122
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHh
Q 009640 417 DVVESCIRAGGALTPAQIGEVLLRN 441 (530)
Q Consensus 417 ~~i~~l~~~~~~~spadi~~~l~~~ 441 (530)
.++.++..+.|||+|||+++|..+
T Consensus 376 -dl~~LA~~T~GfSGADI~~l~~eA 399 (437)
T 4b4t_I 376 -NLETLVTTKDDLSGADIQAMCTEA 399 (437)
T ss_dssp -CHHHHHHHCCSCCHHHHHHHHHHH
T ss_pred -CHHHHHHhCCCCCHHHHHHHHHHH
Confidence 367888889999999999999754
No 3
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-43 Score=370.87 Aligned_cols=220 Identities=21% Similarity=0.286 Sum_probs=186.8
Q ss_pred cCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCcc
Q 009640 185 VPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKV 264 (530)
Q Consensus 185 ~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~ 264 (530)
+...++.+|++|+|.+++|++|.+.+..|+.+|+.|.++|+++++|+|||||||||||+||+|+|++++.+++.++.+.+
T Consensus 172 ~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l 251 (434)
T 4b4t_M 172 VDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQL 251 (434)
T ss_dssp EESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred cCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhh
Confidence 44568889999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred C------ChHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCC
Q 009640 265 T------DNSELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNN 336 (530)
Q Consensus 265 ~------~~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 336 (530)
. +...++.+|..+ .+||||||||||+++.. |... ...
T Consensus 252 ~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~------------------R~~~-----------------~~~ 296 (434)
T 4b4t_M 252 VQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTK------------------RFDS-----------------EKS 296 (434)
T ss_dssp CSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCC------------------CSSG-----------------GGG
T ss_pred hhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhc------------------cCCC-----------------CCC
Confidence 4 345688888766 68999999999998531 1100 001
Q ss_pred CCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCccchH
Q 009640 337 GEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHHALF 416 (530)
Q Consensus 337 ~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~ 416 (530)
.......+++.||+.|||+.+ .++++||+|||+|+.|||||+||||||++|+|++|+.++|..||+.|+.........
T Consensus 297 ~~~~~~~~~~~lL~~ldg~~~--~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dv 374 (434)
T 4b4t_M 297 GDREVQRTMLELLNQLDGFSS--DDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDI 374 (434)
T ss_dssp TTHHHHHHHHHHHHHHTTSCS--SCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCC
T ss_pred CchHHHHHHHHHHHHhhccCC--CCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcC
Confidence 223356788999999999987 478999999999999999999999999999999999999999999998654332111
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHhc
Q 009640 417 DVVESCIRAGGALTPAQIGEVLLRNR 442 (530)
Q Consensus 417 ~~i~~l~~~~~~~spadi~~~l~~~~ 442 (530)
.++.++..+.|||+|||.++|..+.
T Consensus 375 -dl~~lA~~t~G~sGADi~~l~~eA~ 399 (434)
T 4b4t_M 375 -NWQELARSTDEFNGAQLKAVTVEAG 399 (434)
T ss_dssp -CHHHHHHHCSSCCHHHHHHHHHHHH
T ss_pred -CHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 2677888899999999999997543
No 4
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.9e-42 Score=361.79 Aligned_cols=219 Identities=23% Similarity=0.312 Sum_probs=187.0
Q ss_pred cCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCcc
Q 009640 185 VPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKV 264 (530)
Q Consensus 185 ~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~ 264 (530)
+...+..+|++|+|.+++|+.|.+.+..|+.+|++|.++|++|++|+|||||||||||+||+|+|++++.+++.++.+.+
T Consensus 163 ~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l 242 (428)
T 4b4t_K 163 ENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEF 242 (428)
T ss_dssp EESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGT
T ss_pred CCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchh
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred C------ChHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCC
Q 009640 265 T------DNSELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNN 336 (530)
Q Consensus 265 ~------~~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 336 (530)
. +...++.+|..+ .+||||||||||+++.. |... ...
T Consensus 243 ~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~------------------R~~~-----------------~~~ 287 (428)
T 4b4t_K 243 VHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATK------------------RFDA-----------------QTG 287 (428)
T ss_dssp CCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCS------------------CSSS-----------------CSC
T ss_pred hccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhcc------------------ccCC-----------------CCC
Confidence 3 345688999876 78999999999998521 1100 002
Q ss_pred CCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeC-CCCHHHHHHHHHHhhCCcCccch
Q 009640 337 GEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLG-TCGPHAFKVLAKNYLGIESHHAL 415 (530)
Q Consensus 337 ~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~-~p~~~~r~~i~~~~l~~~~~~~~ 415 (530)
.+.....++++||+.|||+.+ ..+++||+|||+|+.|||||+||||||++|+|| +|+.++|..||+.++...... .
T Consensus 288 ~~~~~~r~l~~lL~~ldg~~~--~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~-~ 364 (428)
T 4b4t_K 288 SDREVQRILIELLTQMDGFDQ--STNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLA-P 364 (428)
T ss_dssp CCCHHHHHHHHHHHHHHHSCS--SCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBC-T
T ss_pred CChHHHHHHHHHHHHhhCCCC--CCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCC-c
Confidence 234456789999999999987 467999999999999999999999999999996 899999999999998654332 1
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHh
Q 009640 416 FDVVESCIRAGGALTPAQIGEVLLRN 441 (530)
Q Consensus 416 ~~~i~~l~~~~~~~spadi~~~l~~~ 441 (530)
...++.++..+.|||+|||.++|..+
T Consensus 365 ~~dl~~lA~~t~G~sgadi~~l~~eA 390 (428)
T 4b4t_K 365 EADLDSLIIRNDSLSGAVIAAIMQEA 390 (428)
T ss_dssp TCCHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred ccCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 11367888889999999999999754
No 5
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.6e-42 Score=362.02 Aligned_cols=218 Identities=23% Similarity=0.311 Sum_probs=186.5
Q ss_pred CCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccC
Q 009640 186 PFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVT 265 (530)
Q Consensus 186 ~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~ 265 (530)
...+..+|++|+|.+++|++|.+.+..++.+|+.|.++|+++++|+|||||||||||+||+|+|++++.+++.++.+.+.
T Consensus 173 ~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~ 252 (437)
T 4b4t_L 173 FEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIV 252 (437)
T ss_dssp EESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTC
T ss_pred ccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhc
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999988774
Q ss_pred ------ChHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCC
Q 009640 266 ------DNSELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNG 337 (530)
Q Consensus 266 ------~~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 337 (530)
+...++.+|..+ .+||||||||||+++. +|... ....
T Consensus 253 sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~------------------~R~~~-----------------~~~~ 297 (437)
T 4b4t_L 253 DKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGG------------------RRFSE-----------------GTSA 297 (437)
T ss_dssp CSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSC------------------CCSSS-----------------CCSS
T ss_pred cccchHHHHHHHHHHHHHHhcCCceeeeeccccccc------------------ccccC-----------------CCCc
Confidence 245688888766 7899999999999852 11100 0012
Q ss_pred CcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCccchHH
Q 009640 338 EESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHHALFD 417 (530)
Q Consensus 338 ~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~ 417 (530)
+.....+++.||+.|||+.+ .++++||+|||+|+.|||||+||||||++|+|++||.++|..||+.|+.........
T Consensus 298 ~~~~~~~l~~lL~~lDg~~~--~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~- 374 (437)
T 4b4t_L 298 DREIQRTLMELLTQMDGFDN--LGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEF- 374 (437)
T ss_dssp TTHHHHHHHHHHHHHHSSSC--TTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCC-
T ss_pred chHHHHHHHHHHHHhhcccC--CCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCccc-
Confidence 33456789999999999987 478999999999999999999999999999999999999999999998754433122
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHh
Q 009640 418 VVESCIRAGGALTPAQIGEVLLRN 441 (530)
Q Consensus 418 ~i~~l~~~~~~~spadi~~~l~~~ 441 (530)
.++.++..+.|||+|||.++|..+
T Consensus 375 dl~~lA~~t~G~sGADi~~l~~eA 398 (437)
T 4b4t_L 375 DFEAAVKMSDGFNGADIRNCATEA 398 (437)
T ss_dssp CHHHHHHTCCSCCHHHHHHHHHHH
T ss_pred CHHHHHHhCCCCCHHHHHHHHHHH
Confidence 267888889999999999999644
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-41 Score=357.75 Aligned_cols=219 Identities=22% Similarity=0.234 Sum_probs=187.2
Q ss_pred cCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCcc
Q 009640 185 VPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKV 264 (530)
Q Consensus 185 ~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~ 264 (530)
+...+..+|++|+|.+++|++|.+.+..++.+|+.|.++|+++++|+|||||||||||+||+|+|++++.+++.++.+.+
T Consensus 200 v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L 279 (467)
T 4b4t_H 200 VEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSEL 279 (467)
T ss_dssp EESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred ecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHh
Confidence 44567889999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred C------ChHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCC
Q 009640 265 T------DNSELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNN 336 (530)
Q Consensus 265 ~------~~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 336 (530)
. ++..++.+|..+ .+||||||||||+++.. |... ..+
T Consensus 280 ~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~------------------R~~~-----------------~~~ 324 (467)
T 4b4t_H 280 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGA------------------RFDD-----------------GAG 324 (467)
T ss_dssp CCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBC------------------CSSS-----------------SCG
T ss_pred hcccCCHHHHHHHHHHHHHHhcCCceEeeccccccccc------------------ccCc-----------------CCC
Confidence 4 345688888876 79999999999998521 1100 001
Q ss_pred CCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCccchH
Q 009640 337 GEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHHALF 416 (530)
Q Consensus 337 ~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~ 416 (530)
.......+++.||+.|||+.+ .++++||+|||+|+.|||||+||||||++|+|++|+.++|..||+.++.........
T Consensus 325 ~~~~~~~~l~~lL~~lDg~~~--~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dv 402 (467)
T 4b4t_H 325 GDNEVQRTMLELITQLDGFDP--RGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGI 402 (467)
T ss_dssp GGGHHHHHHHHHHHHHHSSCC--TTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSC
T ss_pred ccHHHHHHHHHHHHHhhccCC--CCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCC
Confidence 223456788999999999976 578999999999999999999999999999999999999999999999865443112
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHh
Q 009640 417 DVVESCIRAGGALTPAQIGEVLLRN 441 (530)
Q Consensus 417 ~~i~~l~~~~~~~spadi~~~l~~~ 441 (530)
.++.++..+.|||+|||.++|..+
T Consensus 403 -dl~~LA~~T~GfSGADI~~l~~eA 426 (467)
T 4b4t_H 403 -RWELISRLCPNSTGAELRSVCTEA 426 (467)
T ss_dssp -CHHHHHHHCCSCCHHHHHHHHHHH
T ss_pred -CHHHHHHHCCCCCHHHHHHHHHHH
Confidence 367788889999999999999654
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=6.1e-39 Score=361.52 Aligned_cols=278 Identities=18% Similarity=0.240 Sum_probs=177.7
Q ss_pred CCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCcc-
Q 009640 186 PFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKV- 264 (530)
Q Consensus 186 ~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~- 264 (530)
...+..+|++++|.+++|++|.+.+..++.+++.|.+.|..+++|+|||||||||||++|+|+|++++.+++.++.+++
T Consensus 469 ~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~ 548 (806)
T 3cf2_A 469 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 548 (806)
T ss_dssp CBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHH
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhh
Confidence 3456789999999999999999999999999999999999999999999999999999999999999999999987665
Q ss_pred -----CChHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCC
Q 009640 265 -----TDNSELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNG 337 (530)
Q Consensus 265 -----~~~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 337 (530)
.++..++++|..+ .+||||||||||+++..++... ...
T Consensus 549 s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~-----------------------------------~~~ 593 (806)
T 3cf2_A 549 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNI-----------------------------------GDG 593 (806)
T ss_dssp TTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC---------------------------------------------
T ss_pred ccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCC-----------------------------------CCC
Confidence 3577899999887 6899999999999863221100 012
Q ss_pred CcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCccchHH
Q 009640 338 EESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHHALFD 417 (530)
Q Consensus 338 ~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~ 417 (530)
+.....++++||++|||+.+ ..+++||+|||+|+.|||||+||||||++|+|++|+.++|..||+.++...... ...
T Consensus 594 ~~~~~rv~~~lL~~mdg~~~--~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~-~~~ 670 (806)
T 3cf2_A 594 GGAADRVINQILTEMDGMST--KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDV 670 (806)
T ss_dssp ----CHHHHHHHHHHHSSCS--SSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--C-CC-
T ss_pred chHHHHHHHHHHHHHhCCCC--CCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCC-CCC
Confidence 34456789999999999987 467999999999999999999999999999999999999999999999765443 222
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHhccCHHHHHHHHHHHHHH--------------------hhhccccccccccccccCC
Q 009640 418 VVESCIRAGGALTPAQIGEVLLRNRGNVDLAMKEVVSAMQA--------------------KILSGREVMECDELVITRS 477 (530)
Q Consensus 418 ~i~~l~~~~~~~spadi~~~l~~~~~d~~~al~~l~~~l~~--------------------~~~~~~~~~~~~~~~~~~~ 477 (530)
.++.++..+.|||+|||.++|..+. ..|+++.++.... ..++..++..+...++|+-
T Consensus 671 dl~~la~~t~g~SGadi~~l~~~A~---~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~pSv 747 (806)
T 3cf2_A 671 DLEFLAKMTNGFSGADLTEICQRAC---KLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSV 747 (806)
T ss_dssp ---------------CHHHHHHHHH---HHHHHHHHC-----------------------CCC----CCTTTC-------
T ss_pred CHHHHHHhCCCCCHHHHHHHHHHHH---HHHHHHHHHhhhhhhhhhccCccccccccccccCccCHHHHHHHHHhCCCCC
Confidence 4778888899999999999997655 5555554432110 1245566667766666643
Q ss_pred CCcccccCCCCcccCCCCCCCCCCccccc
Q 009640 478 PESVVVVRSPENWDSSPGGKYGNRSKKRK 506 (530)
Q Consensus 478 ~~~~~~~~~~~~w~~~~g~~~~~~~~~~~ 506 (530)
+......+++|....+...|++..+-.
T Consensus 748 --s~~~l~~y~~~~~~f~~~~~~g~~~~~ 774 (806)
T 3cf2_A 748 --SDNDIRKYEMFAQTLQQSRGFGSFRFP 774 (806)
T ss_dssp ----------CCCC---------------
T ss_pred --CHHHHHHHHHHHHHHhcccCccccccC
Confidence 346677899999887776666554433
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=2.9e-37 Score=347.86 Aligned_cols=266 Identities=21% Similarity=0.239 Sum_probs=220.1
Q ss_pred CCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccC--
Q 009640 188 RHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVT-- 265 (530)
Q Consensus 188 ~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~-- 265 (530)
.+..+|++|+|.++++++|.+.+..++.+|+.|.++|+.+++|+|||||||||||+||+|+|++++.+++.++..++.
T Consensus 198 ~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk 277 (806)
T 3cf2_A 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSS
T ss_pred CCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcc
Confidence 456799999999999999999999999999999999999999999999999999999999999999999999976652
Q ss_pred ----ChHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCc
Q 009640 266 ----DNSELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEE 339 (530)
Q Consensus 266 ----~~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (530)
++..++.+|..+ .+||||||||||+++.. |.. ..+.
T Consensus 278 ~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~------------------r~~--------------------~~~~ 319 (806)
T 3cf2_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPK------------------REK--------------------THGE 319 (806)
T ss_dssp CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCT------------------TTT--------------------CCCT
T ss_pred cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccc------------------cCC--------------------CCCh
Confidence 356689999877 68999999999998521 110 1234
Q ss_pred chhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCccchHHHH
Q 009640 340 SGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHHALFDVV 419 (530)
Q Consensus 340 ~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~i 419 (530)
..+.++++||..|||+.+ ..+++||+|||+++.|||||+||||||++|+++.|+.++|.+|++.++...... ....+
T Consensus 320 ~~~riv~~LL~~mdg~~~--~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~-~dvdl 396 (806)
T 3cf2_A 320 VERRIVSQLLTLMDGLKQ--RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDL 396 (806)
T ss_dssp THHHHHHHHHTHHHHCCG--GGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEEC-TTCCH
T ss_pred HHHHHHHHHHHHHhcccc--cCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCC-cccCH
Confidence 467789999999999987 367999999999999999999999999999999999999999999999765443 22237
Q ss_pred HHHHHhCCCCCHHHHHHHHHHhccCHHHHHHHHHHH------------HHHhhhccccccccccccccCCCCcccccCCC
Q 009640 420 ESCIRAGGALTPAQIGEVLLRNRGNVDLAMKEVVSA------------MQAKILSGREVMECDELVITRSPESVVVVRSP 487 (530)
Q Consensus 420 ~~l~~~~~~~spadi~~~l~~~~~d~~~al~~l~~~------------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (530)
..++..+.+|+++||..+|..+. ..|+++.... +....++..++..+...+.|..........+.
T Consensus 397 ~~lA~~T~GfsgaDL~~Lv~eA~---~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~ 473 (806)
T 3cf2_A 397 EQVANETHGHVGADLAALCSEAA---LQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQ 473 (806)
T ss_dssp HHHHHHCCSCCHHHHHHHHHHHH---HHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCC
T ss_pred HHHHHhcCCCCHHHHHHHHHHHH---HHHHHhccccccccccccchhhhccceeeHHHHHHHHHhCCCcccccccccCCC
Confidence 78888899999999999997654 4444443322 22334556667777777778877777778889
Q ss_pred CcccCCCCCC
Q 009640 488 ENWDSSPGGK 497 (530)
Q Consensus 488 ~~w~~~~g~~ 497 (530)
+.|++++|..
T Consensus 474 v~w~diggl~ 483 (806)
T 3cf2_A 474 VTWEDIGGLE 483 (806)
T ss_dssp CCSTTCCSCH
T ss_pred CCHHHhCCHH
Confidence 9999998874
No 9
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.97 E-value=2e-31 Score=267.63 Aligned_cols=214 Identities=20% Similarity=0.295 Sum_probs=167.6
Q ss_pred CCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccCC--
Q 009640 189 HPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVTD-- 266 (530)
Q Consensus 189 ~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~~-- 266 (530)
+..+|++|+|.+++|+.|.+.+..++.+++.|..+|...++|+||+||||||||+|+++||++++..++.++...+.+
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~ 84 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMY 84 (274)
T ss_dssp -------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSST
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhh
Confidence 567899999999999999999999999999999999999999999999999999999999999999999998776632
Q ss_pred ----hHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcc
Q 009640 267 ----NSELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEES 340 (530)
Q Consensus 267 ----~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (530)
...++.+|..+ ..|+|+|+||||.+...++. .....
T Consensus 85 ~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~--------------------------------------~~~~~ 126 (274)
T 2x8a_A 85 VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSD--------------------------------------RETGA 126 (274)
T ss_dssp THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC-----------------------------------------------
T ss_pred hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCC--------------------------------------CcchH
Confidence 23567778764 68999999999987421100 00011
Q ss_pred hhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCc-c-chHHH
Q 009640 341 GRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESH-H-ALFDV 418 (530)
Q Consensus 341 ~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~-~-~~~~~ 418 (530)
....++.+++.|||... ...++++++||+|+.||||++||||||++|++++|+.++|..|++.++..... . .....
T Consensus 127 ~~~~~~~~l~~Lsgg~~--~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~ 204 (274)
T 2x8a_A 127 SVRVVNQLLTEMDGLEA--RQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVN 204 (274)
T ss_dssp CTTHHHHHHHHHHTCCS--TTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCC
T ss_pred HHHHHHHHHHhhhcccc--cCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccC
Confidence 23467899999999875 46688999999999999999999999999999999999999999999853211 1 01123
Q ss_pred HHHHHHh--CCCCCHHHHHHHHHHhc
Q 009640 419 VESCIRA--GGALTPAQIGEVLLRNR 442 (530)
Q Consensus 419 i~~l~~~--~~~~spadi~~~l~~~~ 442 (530)
++.++.. +.|||+|||..+|..+.
T Consensus 205 ~~~la~~~~~~g~sgadl~~l~~~a~ 230 (274)
T 2x8a_A 205 LEAIAGDLRCDCYTGADLSALVREAS 230 (274)
T ss_dssp HHHHHTCSGGGSCCHHHHHHHHHHHH
T ss_pred HHHHHHhhccCCcCHHHHHHHHHHHH
Confidence 5667764 35999999999997554
No 10
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.97 E-value=3.6e-31 Score=271.69 Aligned_cols=221 Identities=22% Similarity=0.246 Sum_probs=181.9
Q ss_pred CCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc-CCcEEEEecCccC-
Q 009640 188 RHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL-CYDVYDLELTKVT- 265 (530)
Q Consensus 188 ~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l-~~~i~~l~l~~~~- 265 (530)
.++.+|++|+|.+++|+.|.+.+..++..++.|... ..+++|+|||||||||||+||+++|+++ +.+++.++.+.+.
T Consensus 6 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~-~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~ 84 (322)
T 1xwi_A 6 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGK-RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 84 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTT-CCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCC
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCC-CCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHh
Confidence 467789999999999999999999999999998753 4556899999999999999999999999 8999999887653
Q ss_pred -----ChHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCC
Q 009640 266 -----DNSELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGE 338 (530)
Q Consensus 266 -----~~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (530)
....++.+|..+ .+|+||||||||.+...+ . ....
T Consensus 85 ~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~------------------~--------------------~~~~ 126 (322)
T 1xwi_A 85 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR------------------S--------------------ENES 126 (322)
T ss_dssp SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCS------------------S--------------------SCCT
T ss_pred hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhcccc------------------c--------------------cccc
Confidence 345677887765 689999999999984200 0 0122
Q ss_pred cchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCccchHHH
Q 009640 339 ESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHHALFDV 418 (530)
Q Consensus 339 ~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~ 418 (530)
......++.||+.+||+... ..+++||+|||+++.||++|+| ||+..|++++|+.++|..|++.++...........
T Consensus 127 ~~~~~~~~~ll~~ld~~~~~-~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~ 203 (322)
T 1xwi_A 127 EAARRIKTEFLVQMQGVGVD-NDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEAD 203 (322)
T ss_dssp THHHHHHHHHHHHHHCSSSC-CTTEEEEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHH
T ss_pred hHHHHHHHHHHHHHhccccc-CCCEEEEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHH
Confidence 34566789999999998642 4679999999999999999999 99999999999999999999999976554423456
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHhccCHHHHHHHHH
Q 009640 419 VESCIRAGGALTPAQIGEVLLRNRGNVDLAMKEVV 453 (530)
Q Consensus 419 i~~l~~~~~~~spadi~~~l~~~~~d~~~al~~l~ 453 (530)
++.++..+.|||++||..+|..+. ..|++.+.
T Consensus 204 l~~la~~t~G~sgadl~~l~~~A~---~~a~r~~~ 235 (322)
T 1xwi_A 204 FRELGRKTDGYSGADISIIVRDAL---MQPVRKVQ 235 (322)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHH---THHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHH---HHHHHHHH
Confidence 888999999999999999997654 44454443
No 11
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.97 E-value=9.9e-31 Score=265.70 Aligned_cols=218 Identities=19% Similarity=0.292 Sum_probs=179.2
Q ss_pred CCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCcc--
Q 009640 187 FRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKV-- 264 (530)
Q Consensus 187 ~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~-- 264 (530)
..++.+|++|+|.+++++.|.+.+..++..++.|..+|.+.++|+|||||||||||++|+++|++++.+++.++...+
T Consensus 8 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~ 87 (301)
T 3cf0_A 8 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 87 (301)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHH
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHh
Confidence 356778999999999999999999999999999999999999999999999999999999999999999999986654
Q ss_pred ----CChHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCC
Q 009640 265 ----TDNSELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGE 338 (530)
Q Consensus 265 ----~~~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (530)
.....++.+|..+ ..|+||||||||.+...++... ....
T Consensus 88 ~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~-----------------------------------~~~~ 132 (301)
T 3cf0_A 88 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNI-----------------------------------GDGG 132 (301)
T ss_dssp HHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTT-----------------------------------CCSS
T ss_pred hhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCc-----------------------------------CCcc
Confidence 2345577788766 5799999999999853111000 0112
Q ss_pred cchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCccchHHH
Q 009640 339 ESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHHALFDV 418 (530)
Q Consensus 339 ~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~ 418 (530)
......++.||+.|||+.. ..+++||+|||+++.||++++|||||+..|+++.|+.++|..|++.++...... ....
T Consensus 133 ~~~~~~~~~lL~~l~~~~~--~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~-~~~~ 209 (301)
T 3cf0_A 133 GAADRVINQILTEMDGMST--KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVD 209 (301)
T ss_dssp CSCCHHHHHHHHHHHSSCT--TSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-SSCC
T ss_pred hHHHHHHHHHHHHhhcccC--CCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCC-ccch
Confidence 2344578899999999865 467999999999999999999999999999999999999999999999754322 1112
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHhc
Q 009640 419 VESCIRAGGALTPAQIGEVLLRNR 442 (530)
Q Consensus 419 i~~l~~~~~~~spadi~~~l~~~~ 442 (530)
++.++..+.+|+++||.++|.++.
T Consensus 210 ~~~la~~~~g~sg~dl~~l~~~a~ 233 (301)
T 3cf0_A 210 LEFLAKMTNGFSGADLTEICQRAC 233 (301)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHH
Confidence 456667789999999999997654
No 12
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.97 E-value=4.3e-31 Score=285.19 Aligned_cols=265 Identities=21% Similarity=0.248 Sum_probs=200.0
Q ss_pred CCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccC---
Q 009640 189 HPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVT--- 265 (530)
Q Consensus 189 ~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~--- 265 (530)
.+.+|++|+|.+..++.|.+.+..++..++.|..+|.+.++|+|||||||||||++|+++|++++.+++.+++..+.
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999976542
Q ss_pred ---ChHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcc
Q 009640 266 ---DNSELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEES 340 (530)
Q Consensus 266 ---~~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (530)
....++.+|..+ ..|+||||||||.+... +. ......
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~------------------~~--------------------~~~~~~ 320 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPK------------------RE--------------------KTHGEV 320 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBC------------------TT--------------------SCCCHH
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhccc------------------cc--------------------cccchH
Confidence 234577778766 67899999999998420 00 012234
Q ss_pred hhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCccchHHHHH
Q 009640 341 GRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHHALFDVVE 420 (530)
Q Consensus 341 ~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~i~ 420 (530)
...+++.||+.||++.. ...++||+|||+++.||++|+|+|||+..|+++.|+.++|..|++.++...... ....+.
T Consensus 321 ~~~~~~~LL~~ld~~~~--~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~-~~~~l~ 397 (489)
T 3hu3_A 321 ERRIVSQLLTLMDGLKQ--RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLE 397 (489)
T ss_dssp HHHHHHHHHHHHHHSCT--TSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBC-TTCCHH
T ss_pred HHHHHHHHHHHhhcccc--CCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCc-chhhHH
Confidence 56788999999998865 467999999999999999999999999999999999999999999998754333 222367
Q ss_pred HHHHhCCCCCHHHHHHHHHHhccCHHHHHHHHHH------------HHHHhhhccccccccccccccCCCCcccccCCCC
Q 009640 421 SCIRAGGALTPAQIGEVLLRNRGNVDLAMKEVVS------------AMQAKILSGREVMECDELVITRSPESVVVVRSPE 488 (530)
Q Consensus 421 ~l~~~~~~~spadi~~~l~~~~~d~~~al~~l~~------------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (530)
.++..+.+|+++||..+|..+. ..|++.... .+....++..++..+...+.|+..+.+....+.+
T Consensus 398 ~la~~t~g~s~~dL~~L~~~A~---~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~~~ps~~re~~~e~p~v 474 (489)
T 3hu3_A 398 QVANETHGHVGADLAALCSEAA---LQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQV 474 (489)
T ss_dssp HHHHTCTTCCHHHHHHHHHHHH---HHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTSHHHHHHHGGGC-----
T ss_pred HHHHHccCCcHHHHHHHHHHHH---HHHHHhccccccccccccchhhcccCcCCHHHHHHHHHhCCchhhhcccccCCCC
Confidence 7888899999999999987543 333332211 1223345566677777777777777778889999
Q ss_pred cccCCCCCC
Q 009640 489 NWDSSPGGK 497 (530)
Q Consensus 489 ~w~~~~g~~ 497 (530)
.|+|+||-+
T Consensus 475 ~W~dig~~~ 483 (489)
T 3hu3_A 475 TWEDIGGRS 483 (489)
T ss_dssp ---------
T ss_pred CHHHcCCCc
Confidence 999998864
No 13
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.97 E-value=4e-31 Score=271.06 Aligned_cols=225 Identities=18% Similarity=0.200 Sum_probs=183.3
Q ss_pred cCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCcc
Q 009640 185 VPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKV 264 (530)
Q Consensus 185 ~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~ 264 (530)
+...++.+|++|+|.+++++.|.+.+..++..++.|...+ ..++|+|||||||||||++|+++|++++.+++.++.+.+
T Consensus 9 ~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l 87 (322)
T 3eie_A 9 LSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNR-KPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 87 (322)
T ss_dssp EEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTC-CCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHH
T ss_pred eecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCC-CCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHH
Confidence 5567888999999999999999999999999999988744 456899999999999999999999999999999987664
Q ss_pred C------ChHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCC
Q 009640 265 T------DNSELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNN 336 (530)
Q Consensus 265 ~------~~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 336 (530)
. ....++.+|..+ .+|+||||||||.+...++. .
T Consensus 88 ~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~--------------------------------------~ 129 (322)
T 3eie_A 88 VSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGE--------------------------------------G 129 (322)
T ss_dssp HTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------------------------------------------
T ss_pred hhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCC--------------------------------------C
Confidence 2 234567777665 68999999999998421100 1
Q ss_pred CCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCccchH
Q 009640 337 GEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHHALF 416 (530)
Q Consensus 337 ~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~ 416 (530)
.........+.||+.++++... ..+++||+|||+++.||++|+| ||+..|++++|+.++|..|++.++.........
T Consensus 130 ~~~~~~~~~~~ll~~l~~~~~~-~~~v~vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~ 206 (322)
T 3eie_A 130 ESEASRRIKTELLVQMNGVGND-SQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTK 206 (322)
T ss_dssp --CCTHHHHHHHHHHHGGGGTS-CCCEEEEEEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCH
T ss_pred cchHHHHHHHHHHHHhcccccc-CCceEEEEecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCH
Confidence 2234566789999999998643 4679999999999999999999 999999999999999999999999866544344
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHhccCHHHHHHHHHH
Q 009640 417 DVVESCIRAGGALTPAQIGEVLLRNRGNVDLAMKEVVS 454 (530)
Q Consensus 417 ~~i~~l~~~~~~~spadi~~~l~~~~~d~~~al~~l~~ 454 (530)
..++.++..+.+|+++||..+|..+. ..|++....
T Consensus 207 ~~l~~la~~t~g~sg~di~~l~~~a~---~~a~r~~~~ 241 (322)
T 3eie_A 207 EDYRTLGAMTEGYSGSDIAVVVKDAL---MQPIRKIQS 241 (322)
T ss_dssp HHHHHHHHTTTTCCHHHHHHHHHHHT---THHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHH---HHHHHHHhh
Confidence 56888898899999999999997665 445554443
No 14
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.97 E-value=2.4e-30 Score=269.02 Aligned_cols=221 Identities=19% Similarity=0.205 Sum_probs=177.0
Q ss_pred CCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCcc--
Q 009640 187 FRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKV-- 264 (530)
Q Consensus 187 ~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~-- 264 (530)
..++.+|++|+|.+++++.|.+.+..++..++.|.. +...++|+|||||||||||++|+++|++++.+++.++...+
T Consensus 44 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~ 122 (355)
T 2qp9_X 44 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 122 (355)
T ss_dssp ---CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHS
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhh
Confidence 456778999999999999999999999999999987 55667899999999999999999999999999999987654
Q ss_pred ----CChHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCC
Q 009640 265 ----TDNSELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGE 338 (530)
Q Consensus 265 ----~~~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (530)
.....++.+|..+ ..|+||||||||.+...+. . ...
T Consensus 123 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~---~-----------------------------------~~~ 164 (355)
T 2qp9_X 123 KWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRG---E-----------------------------------GES 164 (355)
T ss_dssp CC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC--------------------------------------------C
T ss_pred hhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCC---C-----------------------------------Ccc
Confidence 1345577777665 5899999999999842100 0 122
Q ss_pred cchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCccchHHH
Q 009640 339 ESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHHALFDV 418 (530)
Q Consensus 339 ~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~ 418 (530)
......++.||..|||+... ..+++||+|||+++.||++|+| ||+..|++++|+.++|..|++.++...........
T Consensus 165 ~~~~~~~~~ll~~l~~~~~~-~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~ 241 (355)
T 2qp9_X 165 EASRRIKTELLVQMNGVGND-SQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKED 241 (355)
T ss_dssp THHHHHHHHHHHHHHHCC----CCEEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHH
T ss_pred hHHHHHHHHHHHHhhccccc-CCCeEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHH
Confidence 34566788999999988642 4678999999999999999999 99999999999999999999999986554323456
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHhccCHHHHHHHH
Q 009640 419 VESCIRAGGALTPAQIGEVLLRNRGNVDLAMKEV 452 (530)
Q Consensus 419 i~~l~~~~~~~spadi~~~l~~~~~d~~~al~~l 452 (530)
++.++..+.||+++||..+|..+. ..|++..
T Consensus 242 l~~la~~t~G~sg~dl~~l~~~A~---~~a~~~~ 272 (355)
T 2qp9_X 242 YRTLGAMTEGYSGSDIAVVVKDAL---MQPIRKI 272 (355)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHH---HHHHHHH
Confidence 788888899999999999997654 4444443
No 15
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.96 E-value=1.8e-29 Score=269.94 Aligned_cols=223 Identities=21% Similarity=0.223 Sum_probs=179.2
Q ss_pred CCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc-CCcEEEEecCcc
Q 009640 186 PFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL-CYDVYDLELTKV 264 (530)
Q Consensus 186 ~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l-~~~i~~l~l~~~ 264 (530)
...++.+|++|+|.+++++.|.+.+..++..++.|... ..+++|+|||||||||||+||+++|+++ +.+++.++.+.+
T Consensus 126 ~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~-~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l 204 (444)
T 2zan_A 126 IERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGK-RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDL 204 (444)
T ss_dssp CCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGG-GCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC--
T ss_pred ccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhcc-CCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHH
Confidence 34577899999999999999999999999999988753 4556899999999999999999999999 899999988765
Q ss_pred CC------hHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCC
Q 009640 265 TD------NSELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNN 336 (530)
Q Consensus 265 ~~------~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 336 (530)
.+ ...++.+|..+ ..|+||||||||.+...+ . ..
T Consensus 205 ~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~------------------~--------------------~~ 246 (444)
T 2zan_A 205 VSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR------------------S--------------------EN 246 (444)
T ss_dssp -------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCS------------------S--------------------CC
T ss_pred HhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCC------------------C--------------------Cc
Confidence 32 23467777654 689999999999984200 0 01
Q ss_pred CCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCccchH
Q 009640 337 GEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHHALF 416 (530)
Q Consensus 337 ~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~ 416 (530)
........++.||+.|||+... ..+++||+|||+++.|||+|+| ||+..|++++|+.++|..|++.++.........
T Consensus 247 ~~~~~~~~~~~lL~~l~~~~~~-~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~ 323 (444)
T 2zan_A 247 ESEAARRIKTEFLVQMQGVGVD-NDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTE 323 (444)
T ss_dssp CCGGGHHHHHHHHTTTTCSSCC-CSSCEEEEEESCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCH
T ss_pred cccHHHHHHHHHHHHHhCcccC-CCCEEEEecCCCccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCH
Confidence 2334567889999999998642 4679999999999999999999 999999999999999999999999765543234
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHhccCHHHHHHHHH
Q 009640 417 DVVESCIRAGGALTPAQIGEVLLRNRGNVDLAMKEVV 453 (530)
Q Consensus 417 ~~i~~l~~~~~~~spadi~~~l~~~~~d~~~al~~l~ 453 (530)
..++.++..+.||+++||..+|..+. ..|++.+.
T Consensus 324 ~~l~~la~~t~G~sgadl~~l~~~a~---~~a~r~~~ 357 (444)
T 2zan_A 324 ADFQELGRKTDGYSGADISIIVRDAL---MQPVRKVQ 357 (444)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHH---THHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHH---HHHHHHHH
Confidence 56788888899999999999997654 44555443
No 16
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.96 E-value=4.1e-29 Score=268.05 Aligned_cols=214 Identities=23% Similarity=0.318 Sum_probs=174.4
Q ss_pred CCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccC--
Q 009640 188 RHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVT-- 265 (530)
Q Consensus 188 ~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~-- 265 (530)
.+..+|++|+|.+++++++.+.+ .++..+..|.++|...++|+||+||||||||+|++++|++++.+++.++.+.+.
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v-~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVV-EFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL 88 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHH-HHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHH-HHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH
Confidence 35668999999999999999865 467788899999999999999999999999999999999999999999987763
Q ss_pred ----ChHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCc
Q 009640 266 ----DNSELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEE 339 (530)
Q Consensus 266 ----~~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (530)
+...++.+|..+ .+||||||||||.+...++. . ..+.+.
T Consensus 89 ~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~------------------~-----------------~~g~~~ 133 (476)
T 2ce7_A 89 FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGA------------------G-----------------LGGGHD 133 (476)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC--------------------------------------------C
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhccc------------------c-----------------cCcCcH
Confidence 235577888776 68999999999998421100 0 001234
Q ss_pred chhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCccchHHHH
Q 009640 340 SGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHHALFDVV 419 (530)
Q Consensus 340 ~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~i 419 (530)
....+++.||+.|||+.+ ..+++||+|||+++.|||+++||||||..|.++.|+.++|..|++.++......... .+
T Consensus 134 ~~~~~l~~LL~~ld~~~~--~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v-~l 210 (476)
T 2ce7_A 134 EREQTLNQLLVEMDGFDS--KEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDV-NL 210 (476)
T ss_dssp HHHHHHHHHHHHHHHSCG--GGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC-CH
T ss_pred HHHHHHHHHHHHHhccCC--CCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchh-hH
Confidence 456789999999998865 467999999999999999999999999999999999999999999998754322111 25
Q ss_pred HHHHHhCCCCCHHHHHHHHHH
Q 009640 420 ESCIRAGGALTPAQIGEVLLR 440 (530)
Q Consensus 420 ~~l~~~~~~~spadi~~~l~~ 440 (530)
..++..+.|++++||.++|..
T Consensus 211 ~~la~~t~G~sgadL~~lv~~ 231 (476)
T 2ce7_A 211 EIIAKRTPGFVGADLENLVNE 231 (476)
T ss_dssp HHHHHTCTTCCHHHHHHHHHH
T ss_pred HHHHHhcCCCcHHHHHHHHHH
Confidence 567888999999999998865
No 17
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.96 E-value=2e-29 Score=252.71 Aligned_cols=220 Identities=23% Similarity=0.256 Sum_probs=179.4
Q ss_pred cCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCcc
Q 009640 185 VPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKV 264 (530)
Q Consensus 185 ~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~ 264 (530)
+...++.+|++++|.+++++.|.+.+..++..++.|..+|...++++|||||||||||++++++|+.++.+++.++...+
T Consensus 8 ~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~ 87 (285)
T 3h4m_A 8 VDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSEL 87 (285)
T ss_dssp EESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGG
T ss_pred ccCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHH
Confidence 34456788999999999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred CC------hHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCC
Q 009640 265 TD------NSELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNN 336 (530)
Q Consensus 265 ~~------~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 336 (530)
.. ...+..+|..+ ..|+||||||||.+...+.+ . ...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~------------------~-----------------~~~ 132 (285)
T 3h4m_A 88 VKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTD------------------A-----------------LTG 132 (285)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSS------------------S-----------------CCG
T ss_pred HHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCcc------------------c-----------------cCC
Confidence 32 23466666654 67899999999998521000 0 001
Q ss_pred CCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCccchH
Q 009640 337 GEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHHALF 416 (530)
Q Consensus 337 ~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~ 416 (530)
........+..+++.++++.. ..+++||+|||.++.||++++|+|||+..|+++.|+.++|..|++.++...... ..
T Consensus 133 ~~~~~~~~l~~ll~~~~~~~~--~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~ 209 (285)
T 3h4m_A 133 GDREVQRTLMQLLAEMDGFDA--RGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA-ED 209 (285)
T ss_dssp GGGHHHHHHHHHHHHHHTTCS--SSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBC-TT
T ss_pred ccHHHHHHHHHHHHHhhCCCC--CCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCC-Cc
Confidence 123345678889999988765 467999999999999999999999999999999999999999999998754433 22
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHhc
Q 009640 417 DVVESCIRAGGALTPAQIGEVLLRNR 442 (530)
Q Consensus 417 ~~i~~l~~~~~~~spadi~~~l~~~~ 442 (530)
..++.++..+.+++++||..++..+.
T Consensus 210 ~~~~~l~~~~~g~~~~~i~~l~~~a~ 235 (285)
T 3h4m_A 210 VNLEEIAKMTEGCVGAELKAICTEAG 235 (285)
T ss_dssp CCHHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 23567777789999999999986543
No 18
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.96 E-value=2.5e-28 Score=241.63 Aligned_cols=217 Identities=23% Similarity=0.308 Sum_probs=169.2
Q ss_pred CCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccC
Q 009640 186 PFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVT 265 (530)
Q Consensus 186 ~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~ 265 (530)
+..++.+|++++|.+++++.+.+.+ .++..++.|.++|...++|+|||||||||||++++++|+.++.+++.++...+.
T Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~ 82 (257)
T 1lv7_A 4 EDQIKTTFADVAGCDEAKEEVAELV-EYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFV 82 (257)
T ss_dssp ECSSCCCGGGSCSCHHHHHHTHHHH-HHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSST
T ss_pred ccCCCCCHHHhcCcHHHHHHHHHHH-HHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHH
Confidence 3456789999999999999998865 557888889999999999999999999999999999999999999999877653
Q ss_pred ------ChHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCC
Q 009640 266 ------DNSELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNG 337 (530)
Q Consensus 266 ------~~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 337 (530)
....++.+|..+ ..|+|+||||||.+....+ .. ....
T Consensus 83 ~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~------------------~~-----------------~~~~ 127 (257)
T 1lv7_A 83 EMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRG------------------AG-----------------LGGG 127 (257)
T ss_dssp TSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCS------------------TT-----------------SCCT
T ss_pred HHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCC------------------CC-----------------cCCC
Confidence 345677788765 5689999999999842000 00 0011
Q ss_pred CcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCccchHH
Q 009640 338 EESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHHALFD 417 (530)
Q Consensus 338 ~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~ 417 (530)
.......+..+|+.+|++.. ...++||+|||+++.+|++++|||||+..|+++.|+.++|..|++.++...... ...
T Consensus 128 ~~~~~~~~~~ll~~l~~~~~--~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~-~~~ 204 (257)
T 1lv7_A 128 HDEREQTLNQMLVEMDGFEG--NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-PDI 204 (257)
T ss_dssp TCHHHHHHHHHHHHHHTCCS--SSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-TTC
T ss_pred chHHHHHHHHHHHHhhCccc--CCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCC-ccc
Confidence 22334678899999999865 467999999999999999999999999999999999999999999998654322 111
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHh
Q 009640 418 VVESCIRAGGALTPAQIGEVLLRN 441 (530)
Q Consensus 418 ~i~~l~~~~~~~spadi~~~l~~~ 441 (530)
.+..++..+.||+++||.+++..+
T Consensus 205 ~~~~la~~~~G~~~~dl~~l~~~a 228 (257)
T 1lv7_A 205 DAAIIARGTPGFSGADLANLVNEA 228 (257)
T ss_dssp CHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred cHHHHHHHcCCCCHHHHHHHHHHH
Confidence 244566778999999999998654
No 19
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.96 E-value=5.3e-28 Score=238.76 Aligned_cols=215 Identities=22% Similarity=0.287 Sum_probs=161.0
Q ss_pred CCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccCC---
Q 009640 190 PSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVTD--- 266 (530)
Q Consensus 190 ~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~~--- 266 (530)
+.+|++++|.+++++.|.+.+. ++..++.|...|.+.++++|||||||||||++|+++|++++.+++.++.+.+..
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~-~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 80 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVD-YLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIG 80 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHH-HHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSST
T ss_pred CCCHHHhCCHHHHHHHHHHHHH-HHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhcc
Confidence 5689999999999999988654 578888999999999999999999999999999999999999999999877632
Q ss_pred ---hHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcch
Q 009640 267 ---NSELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESG 341 (530)
Q Consensus 267 ---~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (530)
...++.+|..+ ..|+||||||||.+...+.... ........
T Consensus 81 ~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~----------------------------------~~~~~~~~ 126 (262)
T 2qz4_A 81 GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTM----------------------------------SGFSNTEE 126 (262)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEECC-----------------------------------------------------
T ss_pred ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccc----------------------------------cCccchhH
Confidence 34566777665 5699999999999842110000 00012234
Q ss_pred hhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCccchHH-HHH
Q 009640 342 RVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHHALFD-VVE 420 (530)
Q Consensus 342 ~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~-~i~ 420 (530)
...+..|++.++++.. ...++||+|||.++.||++++|+|||+..|++++|+.++|..|++.++.........+ .+.
T Consensus 127 ~~~l~~ll~~~~~~~~--~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~ 204 (262)
T 2qz4_A 127 EQTLNQLLVEMDGMGT--TDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQ 204 (262)
T ss_dssp CHHHHHHHHHHHTCCT--TCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHH
T ss_pred HHHHHHHHHHhhCcCC--CCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHH
Confidence 5678899999998765 4679999999999999999999999999999999999999999999986443331222 346
Q ss_pred HHHHhCCCCCHHHHHHHHHHh
Q 009640 421 SCIRAGGALTPAQIGEVLLRN 441 (530)
Q Consensus 421 ~l~~~~~~~spadi~~~l~~~ 441 (530)
.++..+.+++++||.+++..+
T Consensus 205 ~l~~~~~g~~~~~l~~l~~~a 225 (262)
T 2qz4_A 205 RLAELTPGFSGADIANICNEA 225 (262)
T ss_dssp HHHHTCTTCCHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHH
Confidence 777788999999999998754
No 20
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.95 E-value=5.7e-28 Score=251.23 Aligned_cols=263 Identities=20% Similarity=0.245 Sum_probs=194.0
Q ss_pred CCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccCC-
Q 009640 188 RHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVTD- 266 (530)
Q Consensus 188 ~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~~- 266 (530)
.++.+|++|+|.+++++.|.+.+..++..++.|...+ ..++++|||||||||||++|+++|++++.+++.++.+.+..
T Consensus 78 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~ 156 (357)
T 3d8b_A 78 GPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSK 156 (357)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhcc
Confidence 3577899999999999999999999999999888776 45689999999999999999999999999999999877632
Q ss_pred -----hHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCc
Q 009640 267 -----NSELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEE 339 (530)
Q Consensus 267 -----~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (530)
...++.+|..+ ..|+||||||||.+...+.. ....
T Consensus 157 ~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~--------------------------------------~~~~ 198 (357)
T 3d8b_A 157 WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGD--------------------------------------GEHE 198 (357)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC--------------------------------------------C
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCC--------------------------------------Ccch
Confidence 23456666654 67999999999998521000 1223
Q ss_pred chhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCccchHHHH
Q 009640 340 SGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHHALFDVV 419 (530)
Q Consensus 340 ~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~i 419 (530)
.....++.||..++|+.......++||+|||.++.||++++| ||+..|+++.|+.++|..+++.++.........+.+
T Consensus 199 ~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l 276 (357)
T 3d8b_A 199 SSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEI 276 (357)
T ss_dssp HHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHH
T ss_pred HHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHH
Confidence 456678899999999875445678999999999999999999 999999999999999999999988654433234567
Q ss_pred HHHHHhCCCCCHHHHHHHHHHhccCHHHHHHHHHHH-------HHHhhhccccccccccccccCCCCcccccCCCCcccC
Q 009640 420 ESCIRAGGALTPAQIGEVLLRNRGNVDLAMKEVVSA-------MQAKILSGREVMECDELVITRSPESVVVVRSPENWDS 492 (530)
Q Consensus 420 ~~l~~~~~~~spadi~~~l~~~~~d~~~al~~l~~~-------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 492 (530)
+.++..+.+|+++||..+|..+. ..+++.+... .+...++..++..+...+.|+... .....+++|..
T Consensus 277 ~~la~~t~G~s~~dl~~l~~~a~---~~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~~~ps~~~--~~~~~~~~~~~ 351 (357)
T 3d8b_A 277 EQIVQQSDAFSGADMTQLCREAS---LGPIRSLQTADIATITPDQVRPIAYIDFENAFRTVRPSVSP--KDLELYENWNK 351 (357)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHH---THHHHHCCC----------CCCBCHHHHHHHHHHHGGGCCC--CCHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHH---HHHHHHhhhhhhccccccccCCcCHHHHHHHHHhcCCCCCH--HHHHHHHHHHH
Confidence 88888899999999999987544 2233322111 112234445555555555443322 34455678887
Q ss_pred CCCC
Q 009640 493 SPGG 496 (530)
Q Consensus 493 ~~g~ 496 (530)
.+|.
T Consensus 352 ~~g~ 355 (357)
T 3d8b_A 352 TFGC 355 (357)
T ss_dssp HHSC
T ss_pred HhCC
Confidence 7664
No 21
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.95 E-value=2.9e-27 Score=238.54 Aligned_cols=266 Identities=17% Similarity=0.230 Sum_probs=187.9
Q ss_pred cCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCcc
Q 009640 185 VPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKV 264 (530)
Q Consensus 185 ~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~ 264 (530)
+...++.+|++++|.+++++.+.+.+..++..++.|..++. .++++|||||||||||++|+++|++++.+++.++.+.+
T Consensus 12 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~-~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l 90 (297)
T 3b9p_A 12 VEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRA-PAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASL 90 (297)
T ss_dssp BCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGC-CCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTT
T ss_pred ccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCC-CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHH
Confidence 34457889999999999999999999999999998887764 45899999999999999999999999999999998765
Q ss_pred CC------hHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCC
Q 009640 265 TD------NSELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNN 336 (530)
Q Consensus 265 ~~------~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 336 (530)
.. ...++.+|..+ ..|+||||||||.+++.... .
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~--------------------------------------~ 132 (297)
T 3b9p_A 91 TSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSS--------------------------------------S 132 (297)
T ss_dssp SSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----------------------------------------
T ss_pred hhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhcccccc--------------------------------------C
Confidence 32 33455666544 68999999999998531100 1
Q ss_pred CCcchhhhHHHHhhhccCCccC-CCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCccch
Q 009640 337 GEESGRVTLSGLLNFTDGLWSC-CSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHHAL 415 (530)
Q Consensus 337 ~~~~~~~~ls~LLn~lDgl~s~-~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~ 415 (530)
.........+.||..+|++... .+..++||+|||.++.||++++| ||+..+++++|+.++|..|++.++........
T Consensus 133 ~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~ 210 (297)
T 3b9p_A 133 EHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLD 210 (297)
T ss_dssp --CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSC
T ss_pred cchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCC
Confidence 1222345677899999987642 13568999999999999999999 99999999999999999999998875443323
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHhccCHHHHHHHHHHHHH-------HhhhccccccccccccccCCCCcccccCCCC
Q 009640 416 FDVVESCIRAGGALTPAQIGEVLLRNRGNVDLAMKEVVSAMQ-------AKILSGREVMECDELVITRSPESVVVVRSPE 488 (530)
Q Consensus 416 ~~~i~~l~~~~~~~spadi~~~l~~~~~d~~~al~~l~~~l~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (530)
...++.++..+.|++++||..++..+. ..|++++..... ...++..++..+...+.|+. .......++
T Consensus 211 ~~~~~~la~~~~g~~~~~l~~l~~~a~---~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~s~--~~~~~~~~~ 285 (297)
T 3b9p_A 211 TEALRRLAKITDGYSGSDLTALAKDAA---LEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSV--APQSLNSYE 285 (297)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHT---THHHHTCC--------CCCCCCCCHHHHHHHTTSCCCSS--CHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHH---HHHHHHHhhhhcccccccccCCcCHHHHHHHHHHcCCCC--CHHHHHHHH
Confidence 456778888899999999999987544 223332211110 11233444444444433322 223445667
Q ss_pred cccCCCCC
Q 009640 489 NWDSSPGG 496 (530)
Q Consensus 489 ~w~~~~g~ 496 (530)
+|....|.
T Consensus 286 ~~~~~~~~ 293 (297)
T 3b9p_A 286 KWSQDYGD 293 (297)
T ss_dssp HHC-----
T ss_pred HHHHHhCC
Confidence 78877654
No 22
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.95 E-value=6.8e-27 Score=252.21 Aligned_cols=214 Identities=21% Similarity=0.292 Sum_probs=172.7
Q ss_pred CCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccCC--
Q 009640 189 HPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVTD-- 266 (530)
Q Consensus 189 ~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~~-- 266 (530)
++.+|++|+|.+++++++.+.+ .++..+..|.++|...++|+||+||||||||+|+++||++++.+++.++.+.+..
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv-~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIV-EFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHH-HHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHH-HHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 6789999999999999998855 5577888899999999999999999999999999999999999999999876632
Q ss_pred ----hHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcc
Q 009640 267 ----NSELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEES 340 (530)
Q Consensus 267 ----~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (530)
...++.+|..+ ..|+|+||||||.+....+. ........
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~-----------------------------------~~~~~~~e 149 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGS-----------------------------------GVGGGNDE 149 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSS-----------------------------------STTTSSHH
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhcc-----------------------------------CcCCCcHH
Confidence 34577788776 36899999999987310000 00011233
Q ss_pred hhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCccchHHHHH
Q 009640 341 GRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHHALFDVVE 420 (530)
Q Consensus 341 ~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~i~ 420 (530)
...+++.||+.|||... ...+++|++||+|+.|||+|+||||||.+|+++.|+.++|..|++.++...... ....+.
T Consensus 150 ~~~~l~~LL~~Ldg~~~--~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~-~dv~l~ 226 (499)
T 2dhr_A 150 REQTLNQLLVEMDGFEK--DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLA-EDVDLA 226 (499)
T ss_dssp HHHHHHHHHHHGGGCCS--SCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCC-CSSTTH
T ss_pred HHHHHHHHHHHhccccc--CccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCC-hHHHHH
Confidence 45678999999998875 466899999999999999999999999999999999999999999987643222 111256
Q ss_pred HHHHhCCCCCHHHHHHHHHHh
Q 009640 421 SCIRAGGALTPAQIGEVLLRN 441 (530)
Q Consensus 421 ~l~~~~~~~spadi~~~l~~~ 441 (530)
.++..+.|++++||.++|..+
T Consensus 227 ~lA~~t~G~~gadL~~lv~~A 247 (499)
T 2dhr_A 227 LLAKRTPGFVGADLENLLNEA 247 (499)
T ss_dssp HHHTTSCSCCHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHH
Confidence 677789999999999998653
No 23
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.94 E-value=4.3e-26 Score=239.57 Aligned_cols=217 Identities=21% Similarity=0.267 Sum_probs=176.5
Q ss_pred cCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCcc
Q 009640 185 VPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKV 264 (530)
Q Consensus 185 ~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~ 264 (530)
+...++.+|++|+|.+.+++.|.+.+..++..++.|..++.+ .+++|||||||||||++|+++|++++.+++.++++.+
T Consensus 106 ~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l 184 (389)
T 3vfd_A 106 VDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAP-ARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASL 184 (389)
T ss_dssp BCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCC-CSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC
T ss_pred hccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCC-CceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHh
Confidence 566788999999999999999999999999999999888754 6899999999999999999999999999999998876
Q ss_pred C------ChHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCC
Q 009640 265 T------DNSELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNN 336 (530)
Q Consensus 265 ~------~~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 336 (530)
. ....++.+|..+ ..|+||||||||.++.-... .
T Consensus 185 ~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~--------------------------------------~ 226 (389)
T 3vfd_A 185 TSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERRE--------------------------------------G 226 (389)
T ss_dssp -------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------------------------------------------
T ss_pred hccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCC--------------------------------------c
Confidence 3 234466666654 67899999999998521100 1
Q ss_pred CCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCccchH
Q 009640 337 GEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHHALF 416 (530)
Q Consensus 337 ~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~ 416 (530)
........+..||..++|+.......++||+|||+++.||++++| ||+..|+++.|+.++|..|++.++.........
T Consensus 227 ~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~ 304 (389)
T 3vfd_A 227 EHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQ 304 (389)
T ss_dssp --CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCH
T ss_pred cchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCH
Confidence 223356678899999998876545678999999999999999999 999999999999999999999998765544345
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHhc
Q 009640 417 DVVESCIRAGGALTPAQIGEVLLRNR 442 (530)
Q Consensus 417 ~~i~~l~~~~~~~spadi~~~l~~~~ 442 (530)
+.++.++..+.++++++|..++..+.
T Consensus 305 ~~~~~la~~~~g~~~~~l~~L~~~a~ 330 (389)
T 3vfd_A 305 KELAQLARMTDGYSGSDLTALAKDAA 330 (389)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 56788888899999999999986544
No 24
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.94 E-value=6.1e-28 Score=239.96 Aligned_cols=217 Identities=24% Similarity=0.303 Sum_probs=165.9
Q ss_pred CCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccCC-
Q 009640 188 RHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVTD- 266 (530)
Q Consensus 188 ~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~~- 266 (530)
.++.+|++++|.+++++.+.+.+. ++..++.|..+|...++|+|||||||||||++|+++|++++.+++.++.+.+..
T Consensus 5 ~~~~~~~~i~G~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~ 83 (268)
T 2r62_A 5 KPNVRFKDMAGNEEAKEEVVEIVD-FLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM 83 (268)
T ss_dssp CCCCCSTTSSSCTTTHHHHHHHHH-HHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTS
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHH-HHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHh
Confidence 456789999999999999988654 588899999999999999999999999999999999999999999888765421
Q ss_pred -----hHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCc
Q 009640 267 -----NSELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEE 339 (530)
Q Consensus 267 -----~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (530)
...++.+|..+ ..|+||||||||.+...+.... ....+.
T Consensus 84 ~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~----------------------------------~~~~~~ 129 (268)
T 2r62_A 84 FVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGG----------------------------------VVSGND 129 (268)
T ss_dssp CSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC--------------------------------------------CC
T ss_pred hcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccc----------------------------------cCCCch
Confidence 22344455544 5789999999999842110000 001122
Q ss_pred chhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCccchHHHH
Q 009640 340 SGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHHALFDVV 419 (530)
Q Consensus 340 ~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~i 419 (530)
.....++.||+.+++..+. ...++||+|||.++.||++++|+|||+..|+++.|+.++|..+++.++...... ....+
T Consensus 130 ~~~~~~~~ll~~l~~~~~~-~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~ 207 (268)
T 2r62_A 130 EREQTLNQLLAEMDGFGSE-NAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLA-NDVNL 207 (268)
T ss_dssp CSCSSTTTTTTTTTCSSCS-CSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCC-SSCCT
T ss_pred hHHHHHHHHHHHhhCcccC-CCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCC-CccCH
Confidence 2344677899999987642 455899999999999999999999999999999999999999999998643221 11113
Q ss_pred HHHHHhCCCCCHHHHHHHHHHh
Q 009640 420 ESCIRAGGALTPAQIGEVLLRN 441 (530)
Q Consensus 420 ~~l~~~~~~~spadi~~~l~~~ 441 (530)
+.++..+.+++++||.+++..+
T Consensus 208 ~~la~~~~g~~g~dl~~l~~~a 229 (268)
T 2r62_A 208 QEVAKLTAGLAGADLANIINEA 229 (268)
T ss_dssp TTTTSSSCSSCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHH
Confidence 4456567899999999988643
No 25
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.94 E-value=4.3e-26 Score=225.17 Aligned_cols=218 Identities=21% Similarity=0.262 Sum_probs=168.7
Q ss_pred cCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCcc
Q 009640 185 VPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKV 264 (530)
Q Consensus 185 ~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~ 264 (530)
+...++.+|++++|.++++.++.+.... +..+..+..++...++|++|+||||||||+|+++||+.++..++.++...+
T Consensus 7 ~~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~ 85 (254)
T 1ixz_A 7 LTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF 85 (254)
T ss_dssp -CCCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred ccCCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHH
Confidence 3445677999999999999999886554 567788999999999999999999999999999999999999988875443
Q ss_pred C------ChHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCC
Q 009640 265 T------DNSELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNN 336 (530)
Q Consensus 265 ~------~~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 336 (530)
. ....+..+|..+ ..|++++|||||.+....... ...
T Consensus 86 ~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~-----------------------------------~~~ 130 (254)
T 1ixz_A 86 VEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG-----------------------------------VGG 130 (254)
T ss_dssp HHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC-------------------------------------------
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCcc-----------------------------------ccc
Confidence 1 123466777765 468999999999874211000 001
Q ss_pred CCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCccchH
Q 009640 337 GEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHHALF 416 (530)
Q Consensus 337 ~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~ 416 (530)
........++.+++.++|... ...++++++||+|+.|||+++|+|||+.+|+++.|+.++|..|++.++...... ..
T Consensus 131 ~~~~~~~~~~~ll~~l~g~~~--~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~ 207 (254)
T 1ixz_A 131 GNDEREQTLNQLLVEMDGFEK--DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLA-ED 207 (254)
T ss_dssp -CHHHHHHHHHHHHHHHTCCT--TCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBC-TT
T ss_pred cchHHHHHHHHHHHHHhCCCC--CCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCC-cc
Confidence 122334567899999998765 355788899999999999999999999999999999999999999887643322 11
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHh
Q 009640 417 DVVESCIRAGGALTPAQIGEVLLRN 441 (530)
Q Consensus 417 ~~i~~l~~~~~~~spadi~~~l~~~ 441 (530)
..+..++..+.|++++||.++|..+
T Consensus 208 ~~~~~la~~~~G~~~~dl~~~~~~a 232 (254)
T 1ixz_A 208 VDLALLAKRTPGFVGADLENLLNEA 232 (254)
T ss_dssp CCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred cCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 1255677889999999999999644
No 26
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.94 E-value=3.7e-29 Score=285.30 Aligned_cols=218 Identities=19% Similarity=0.282 Sum_probs=173.1
Q ss_pred CCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccC-
Q 009640 187 FRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVT- 265 (530)
Q Consensus 187 ~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~- 265 (530)
..+..+|+++++.+++|+.|.+.+..++..++.|..+|...++++|||||||||||+||+++|++++.+++.++.+.+.
T Consensus 470 ~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~ 549 (806)
T 1ypw_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 549 (806)
T ss_dssp CCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTT
T ss_pred cCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhh
Confidence 4466789999999999999999988888899999999999999999999999999999999999999999999877752
Q ss_pred -----ChHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCC
Q 009640 266 -----DNSELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGE 338 (530)
Q Consensus 266 -----~~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (530)
....++.+|..+ ..||||||||||.++..++.. .....
T Consensus 550 ~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~-----------------------------------~~~~~ 594 (806)
T 1ypw_A 550 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGN-----------------------------------IGDGG 594 (806)
T ss_dssp CCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTC-----------------------------------CSHHH
T ss_pred hhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCC-----------------------------------CCCcc
Confidence 346688888776 578999999999985211100 00011
Q ss_pred cchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCccchHHH
Q 009640 339 ESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHHALFDV 418 (530)
Q Consensus 339 ~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~ 418 (530)
.....+++.||+.|||+.. ...++||+|||+++.|||||+|||||+.+|++++|+.++|..|++.++...... ....
T Consensus 595 ~~~~~v~~~LL~~ld~~~~--~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~ 671 (806)
T 1ypw_A 595 GAADRVINQILTEMDGMST--KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVD 671 (806)
T ss_dssp HHHHHHHHHHHTTCC--------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC-----CCC
T ss_pred hhHHHHHHHHHHHHhcccc--cCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCC-cccC
Confidence 2356788999999999976 467999999999999999999999999999999999999999999998653222 1112
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHhc
Q 009640 419 VESCIRAGGALTPAQIGEVLLRNR 442 (530)
Q Consensus 419 i~~l~~~~~~~spadi~~~l~~~~ 442 (530)
++.++..+.+||++||.++|..+.
T Consensus 672 l~~la~~t~g~sgadi~~l~~~a~ 695 (806)
T 1ypw_A 672 LEFLAKMTNGFSGADLTEICQRAC 695 (806)
T ss_dssp CSCSCGGGSSSCCHHHHHHHHHHH
T ss_pred HHHHHHhccccCHHHHHHHHHHHH
Confidence 445666689999999999997544
No 27
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.93 E-value=6.4e-25 Score=220.01 Aligned_cols=217 Identities=21% Similarity=0.275 Sum_probs=168.0
Q ss_pred CCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccC
Q 009640 186 PFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVT 265 (530)
Q Consensus 186 ~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~ 265 (530)
...++.+|++++|.+++++++.+... ++..+..+..++...++|++|+||||||||+|+++||+.++..++.++...+.
T Consensus 32 ~~~~~~~~~~i~g~~~~~~~l~~l~~-~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~ 110 (278)
T 1iy2_A 32 TEAPKVTFKDVAGAEEAKEELKEIVE-FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 110 (278)
T ss_dssp CCCCCCCGGGSSSCHHHHHHHHHHHH-HHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred cCCCCCCHHHhCChHHHHHHHHHHHH-HHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHH
Confidence 34477899999999999999887555 45677888999999999999999999999999999999999999888765431
Q ss_pred ------ChHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCC
Q 009640 266 ------DNSELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNG 337 (530)
Q Consensus 266 ------~~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 337 (530)
....+..+|..+ ..|++++|||||.+....... ....
T Consensus 111 ~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~-----------------------------------~~~~ 155 (278)
T 1iy2_A 111 EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG-----------------------------------VGGG 155 (278)
T ss_dssp HSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC-------------------------------------------
T ss_pred HHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccc-----------------------------------cCCc
Confidence 123466677765 468999999999874211000 0001
Q ss_pred CcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCccchHH
Q 009640 338 EESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHHALFD 417 (530)
Q Consensus 338 ~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~ 417 (530)
.......+..+++.++|... ...++++++||+|+.|||+++|+|||+.+|+++.|+.++|..|++.++...... ...
T Consensus 156 ~~~~~~~~~~ll~~lsgg~~--~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~ 232 (278)
T 1iy2_A 156 NDEREQTLNQLLVEMDGFEK--DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLA-EDV 232 (278)
T ss_dssp CHHHHHHHHHHHHHHTTCCT--TCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBC-TTC
T ss_pred chHHHHHHHHHHHHHhCCCC--CCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCC-ccc
Confidence 12235567889999998764 355788999999999999999999999999999999999999999988643322 111
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHh
Q 009640 418 VVESCIRAGGALTPAQIGEVLLRN 441 (530)
Q Consensus 418 ~i~~l~~~~~~~spadi~~~l~~~ 441 (530)
.+..++..+.+++++||.++|..+
T Consensus 233 ~~~~la~~~~G~~~~dl~~l~~~a 256 (278)
T 1iy2_A 233 DLALLAKRTPGFVGADLENLLNEA 256 (278)
T ss_dssp CHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHH
Confidence 255677789999999999998644
No 28
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.92 E-value=8.4e-26 Score=228.66 Aligned_cols=173 Identities=14% Similarity=0.065 Sum_probs=124.3
Q ss_pred hhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccC------ChHHHHHHHHhc------CCCeEEEEcCcc
Q 009640 222 RVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVT------DNSELRALLLQT------TNRSIIVIEDID 289 (530)
Q Consensus 222 ~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~------~~~~L~~l~~~~------~~~sII~IDeID 289 (530)
..+..+++|+|||||||||||+||+++|++++.+++.++++.+. ....++.+|..+ ..||||||||||
T Consensus 30 ~~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD 109 (293)
T 3t15_A 30 LPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLD 109 (293)
T ss_dssp CTTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechh
Confidence 34677789999999999999999999999999999999977653 234466777655 479999999999
Q ss_pred chhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCcc---------CCC
Q 009640 290 CSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWS---------CCS 360 (530)
Q Consensus 290 ~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s---------~~~ 360 (530)
++.+ ++.. ........+...+.|++.||+... ...
T Consensus 110 ~~~~---~~~~---------------------------------~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~ 153 (293)
T 3t15_A 110 AGAG---RMGG---------------------------------TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQEN 153 (293)
T ss_dssp --------------------------------------------------CHHHHHHHHHHHHHCCC-----------CC
T ss_pred hhcC---CCCC---------------------------------CccccchHHHHHHHHHHHhccccccccccccccccC
Confidence 9852 0000 001122345677899999986541 113
Q ss_pred CCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCccchHHHHHHHHHhCCCCCHHHHHHH
Q 009640 361 EEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHHALFDVVESCIRAGGALTPAQIGEV 437 (530)
Q Consensus 361 ~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~i~~l~~~~~~~spadi~~~ 437 (530)
.+++||+|||+++.||+||+||||||.+|+ .|+.++|..|++.++...... .+.+..+ +.+|++++|.-+
T Consensus 154 ~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~~r~~Il~~~~~~~~~~--~~~l~~~---~~~~~~~~l~~~ 223 (293)
T 3t15_A 154 ARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCTGIFRTDNVP--AEDVVKI---VDNFPGQSIDFF 223 (293)
T ss_dssp CCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHHHHHHHHHHHHGGGCCC--HHHHHHH---HHHSCSCCHHHH
T ss_pred CCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHHHHHHHHHHhccCCCCC--HHHHHHH---hCCCCcccHHHH
Confidence 568999999999999999999999999998 479999999999988754433 3334444 467888888643
No 29
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.91 E-value=5.1e-24 Score=242.97 Aligned_cols=213 Identities=23% Similarity=0.273 Sum_probs=176.5
Q ss_pred CCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccC--
Q 009640 188 RHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVT-- 265 (530)
Q Consensus 188 ~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~-- 265 (530)
.++.+|++|+|.+++++.|.+.+..++.+++.|..+++..++++|||||||||||+|+++||++++.+++.++...+.
T Consensus 198 ~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~ 277 (806)
T 1ypw_A 198 LNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSS
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhh
Confidence 456789999999999999999999999999999999999999999999999999999999999999999999876542
Q ss_pred ----ChHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCc
Q 009640 266 ----DNSELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEE 339 (530)
Q Consensus 266 ----~~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (530)
....++.+|..+ ..|+|+||||||.++...+ .....
T Consensus 278 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~--------------------------------------~~~~~ 319 (806)
T 1ypw_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKRE--------------------------------------KTHGE 319 (806)
T ss_dssp STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTS--------------------------------------CCCSH
T ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccc--------------------------------------cccch
Confidence 234567777765 5799999999999852100 01223
Q ss_pred chhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCccchHHHH
Q 009640 340 SGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHHALFDVV 419 (530)
Q Consensus 340 ~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~i 419 (530)
.....+..|++.++|+.. ...+++|+|||+++.||+++.|+|||+..|.++.|+.++|..|++.++...... ....+
T Consensus 320 ~~~~~~~~Ll~ll~g~~~--~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l 396 (806)
T 1ypw_A 320 VERRIVSQLLTLMDGLKQ--RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDL 396 (806)
T ss_dssp HHHHHHHHHHHHHHSSCT--TSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCC-TTCCT
T ss_pred HHHHHHHHHHHHhhhhcc--cccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCc-ccchh
Confidence 345678899999999876 367899999999999999999999999999999999999999999887643322 11125
Q ss_pred HHHHHhCCCCCHHHHHHHHHHh
Q 009640 420 ESCIRAGGALTPAQIGEVLLRN 441 (530)
Q Consensus 420 ~~l~~~~~~~spadi~~~l~~~ 441 (530)
..++..+.+++++++..++..+
T Consensus 397 ~~la~~t~g~~g~dl~~l~~ea 418 (806)
T 1ypw_A 397 EQVANETHGHVGADLAALCSEA 418 (806)
T ss_dssp HHHHHSCSSCCHHHHHHHHHHH
T ss_pred HHHHHhhcCcchHHHHHHHHHH
Confidence 6677778999999999887643
No 30
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.82 E-value=3e-19 Score=183.05 Aligned_cols=199 Identities=14% Similarity=0.140 Sum_probs=147.3
Q ss_pred CCccccCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 180 SGWVSVPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 180 ~~w~~~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
..| .....|.+|++++|.+..++.+...+....... ....++||+||||||||++|+++|+.++.+++.+
T Consensus 17 ~~~--~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~~--------~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~ 86 (338)
T 3pfi_A 17 ETY--ETSLRPSNFDGYIGQESIKKNLNVFIAAAKKRN--------ECLDHILFSGPAGLGKTTLANIISYEMSANIKTT 86 (338)
T ss_dssp --------CCCCSGGGCCSCHHHHHHHHHHHHHHHHTT--------SCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred hhh--hhccCCCCHHHhCChHHHHHHHHHHHHHHHhcC--------CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence 357 455678899999999999999888877654321 2246899999999999999999999999999999
Q ss_pred ecCccCChHHHHHHHHhcCCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCc
Q 009640 260 ELTKVTDNSELRALLLQTTNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEE 339 (530)
Q Consensus 260 ~l~~~~~~~~L~~l~~~~~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (530)
+...+.....+...+.....+++|||||||.+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~----------------------------------------------- 119 (338)
T 3pfi_A 87 AAPMIEKSGDLAAILTNLSEGDILFIDEIHRLS----------------------------------------------- 119 (338)
T ss_dssp EGGGCCSHHHHHHHHHTCCTTCEEEEETGGGCC-----------------------------------------------
T ss_pred cchhccchhHHHHHHHhccCCCEEEEechhhcC-----------------------------------------------
Confidence 998888888888999888899999999999872
Q ss_pred chhhhHHHHhhhccCCcc--------------CCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHH
Q 009640 340 SGRVTLSGLLNFTDGLWS--------------CCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKN 405 (530)
Q Consensus 340 ~~~~~ls~LLn~lDgl~s--------------~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~ 405 (530)
......|+..++...- .....+++|++||....++++|++ ||+..|+|+.|+.+++..+++.
T Consensus 120 --~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~ 195 (338)
T 3pfi_A 120 --PAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQK 195 (338)
T ss_dssp --HHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHH
Confidence 1123344444442210 001247899999999999999999 9999999999999999999998
Q ss_pred hhCCcCccchHHHHHHHHHhCCCCCHHHHHHHHHH
Q 009640 406 YLGIESHHALFDVVESCIRAGGALTPAQIGEVLLR 440 (530)
Q Consensus 406 ~l~~~~~~~~~~~i~~l~~~~~~~spadi~~~l~~ 440 (530)
++.........+.++.++. ...-.+.++.+++.+
T Consensus 196 ~~~~~~~~~~~~~~~~l~~-~~~G~~r~l~~~l~~ 229 (338)
T 3pfi_A 196 AALKLNKTCEEKAALEIAK-RSRSTPRIALRLLKR 229 (338)
T ss_dssp HHHHTTCEECHHHHHHHHH-TTTTCHHHHHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHH-HHCcCHHHHHHHHHH
Confidence 8764433322344555555 334456666666543
No 31
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.82 E-value=3.1e-22 Score=214.58 Aligned_cols=215 Identities=10% Similarity=0.021 Sum_probs=128.5
Q ss_pred CCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcC--CcEEEEecCccC
Q 009640 188 RHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLC--YDVYDLELTKVT 265 (530)
Q Consensus 188 ~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~--~~i~~l~l~~~~ 265 (530)
.+...|++++|++++++.+...+..+.. |..+++|+|||||||||||++|+++|++++ .+++.++.+.+.
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~~~~~~--------~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~ 102 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIVELIKS--------KKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVY 102 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHHHT--------TCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGC
T ss_pred ChhhchhhccCHHHHHHHHHHHHHHHHh--------CCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHH
Confidence 3455789999999999988876654432 445668999999999999999999999999 899999987763
Q ss_pred C-----hHHHHHHHHhc-----CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCC
Q 009640 266 D-----NSELRALLLQT-----TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNN 335 (530)
Q Consensus 266 ~-----~~~L~~l~~~~-----~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 335 (530)
+ ...++++|..+ ..||||||||||+++..+...... ...+...++..+...
T Consensus 103 ~~~~~~~~~~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~--------------~~~~~~~~~~~~l~~----- 163 (456)
T 2c9o_A 103 STEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMG--------------GYGKTISHVIIGLKT----- 163 (456)
T ss_dssp CSSSCHHHHHHHHHHHTEEEEEEEEEEEEEEEEEEEEEC----------------------------CEEEEEEE-----
T ss_pred HHhhhhhHHHHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCC--------------CcchHHHHHHHHHhc-----
Confidence 2 23478888776 579999999999986322110000 000000000000000
Q ss_pred CCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeE--EEEeCCCC--HHHHHHHHHHhhCCcC
Q 009640 336 NGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDV--HVSLGTCG--PHAFKVLAKNYLGIES 411 (530)
Q Consensus 336 ~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~--~I~~~~p~--~~~r~~i~~~~l~~~~ 411 (530)
.+........+.++..++......++.++|++|||+++.+|+++.||||||. .++++.|+ .++|++|++.+.
T Consensus 164 ~~~~~~~~~~~~ll~~l~~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~---- 239 (456)
T 2c9o_A 164 AKGTKQLKLDPSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVT---- 239 (456)
T ss_dssp TTEEEEEEECHHHHHHHHHTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEE----
T ss_pred cccchhHhhhHHHHHHHhhccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHH----
Confidence 0011112233456666542221224445566899999999999999999999 66677774 466777765432
Q ss_pred ccchHHHHHHHHHhCCCCCHHHHHHHHH
Q 009640 412 HHALFDVVESCIRAGGALTPAQIGEVLL 439 (530)
Q Consensus 412 ~~~~~~~i~~l~~~~~~~spadi~~~l~ 439 (530)
...++.++..+.| ++|+..+|.
T Consensus 240 ----~~dl~~~a~~t~g--gadl~~l~~ 261 (456)
T 2c9o_A 240 ----LHDLDVANARPQG--GQDILSMMG 261 (456)
T ss_dssp ----HHHHHHTC----------------
T ss_pred ----HHHHHHHHHhCCC--hhHHHHHHh
Confidence 1236666666677 889988884
No 32
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.79 E-value=3.1e-18 Score=173.03 Aligned_cols=169 Identities=15% Similarity=0.242 Sum_probs=129.1
Q ss_pred cccCChhhhHHHHHHHHHHHcChhhHhhhcCCCC---ceEEEECCCCCChhHHHHHHHHHcC-------CcEEEEecCcc
Q 009640 195 TLALEPQLKKQITEDLTAFANGKEFYHRVGRAWK---RGYLLYGPPGSGKSSLIAAMANYLC-------YDVYDLELTKV 264 (530)
Q Consensus 195 ~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~---rG~LL~GPPGTGKTsLa~AiA~~l~-------~~i~~l~l~~~ 264 (530)
+++|.+++++.|.+.+..+.. +..+.+.|.... .++|||||||||||++|+++|+.++ .+++.++...+
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLV-ERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHH-HHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HccChHHHHHHHHHHHHHHHh-HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 689999999999998876653 566666675543 4599999999999999999999983 37888887665
Q ss_pred CC------hHHHHHHHHhcCCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCC
Q 009640 265 TD------NSELRALLLQTTNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGE 338 (530)
Q Consensus 265 ~~------~~~L~~l~~~~~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (530)
.. ...+..+|..+ .++||||||||.++... ...
T Consensus 111 ~~~~~g~~~~~~~~~~~~~-~~~vl~iDEid~l~~~~----------------------------------------~~~ 149 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVLKRA-MGGVLFIDEAYYLYRPD----------------------------------------NER 149 (309)
T ss_dssp CCSSTTCHHHHHHHHHHHH-TTSEEEEETGGGSCCCC-------------------------------------------
T ss_pred hhhcccccHHHHHHHHHhc-CCCEEEEEChhhhccCC----------------------------------------Ccc
Confidence 32 34466666665 57899999999984200 011
Q ss_pred cchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCC-----CCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcC
Q 009640 339 ESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRD-----SVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIES 411 (530)
Q Consensus 339 ~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~-----~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~ 411 (530)
......+..|++.++.. ...++||+|||.++ .++|+|++ ||+.+|+|+.|+.+++..|++.++....
T Consensus 150 ~~~~~~~~~Ll~~l~~~----~~~~~~i~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~ 221 (309)
T 3syl_A 150 DYGQEAIEILLQVMENN----RDDLVVILAGYADRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQN 221 (309)
T ss_dssp CCTHHHHHHHHHHHHHC----TTTCEEEEEECHHHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHhcC----CCCEEEEEeCChHHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcC
Confidence 22455778888888843 35678889998654 36899999 9999999999999999999999986543
No 33
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.78 E-value=2.1e-18 Score=175.94 Aligned_cols=198 Identities=17% Similarity=0.146 Sum_probs=146.3
Q ss_pred CCccccCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 180 SGWVSVPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 180 ~~w~~~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
..| +....|.+|++++|++++++.+...+. . ...+..||++||||||||++++++|+.++.+++.+
T Consensus 14 ~~~--~~k~rP~~~~~ivg~~~~~~~l~~~l~----~--------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i 79 (324)
T 3u61_B 14 HIL--EQKYRPSTIDECILPAFDKETFKSITS----K--------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFV 79 (324)
T ss_dssp SSH--HHHSCCCSTTTSCCCHHHHHHHHHHHH----T--------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEE
T ss_pred chH--HHhhCCCCHHHHhCcHHHHHHHHHHHH----c--------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 467 567889999999999998887776554 1 12246789999999999999999999999999999
Q ss_pred ecCccCChHHHHHHHHhc-------CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCC
Q 009640 260 ELTKVTDNSELRALLLQT-------TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNN 332 (530)
Q Consensus 260 ~l~~~~~~~~L~~l~~~~-------~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 332 (530)
+.+... ...++..+... ..+.||||||+|.+.+
T Consensus 80 ~~~~~~-~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~--------------------------------------- 119 (324)
T 3u61_B 80 NGSDCK-IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL--------------------------------------- 119 (324)
T ss_dssp ETTTCC-HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG---------------------------------------
T ss_pred cccccC-HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc---------------------------------------
Confidence 987754 55555544431 2689999999998720
Q ss_pred CCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCc
Q 009640 333 NNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESH 412 (530)
Q Consensus 333 ~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~ 412 (530)
......|+..++... ....+|+|||.+..++++|++ |+. .|.|+.|+.+++..|+..++..
T Consensus 120 ---------~~~~~~L~~~le~~~----~~~~iI~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~--- 180 (324)
T 3u61_B 120 ---------AESQRHLRSFMEAYS----SNCSIIITANNIDGIIKPLQS--RCR-VITFGQPTDEDKIEMMKQMIRR--- 180 (324)
T ss_dssp ---------HHHHHHHHHHHHHHG----GGCEEEEEESSGGGSCTTHHH--HSE-EEECCCCCHHHHHHHHHHHHHH---
T ss_pred ---------HHHHHHHHHHHHhCC----CCcEEEEEeCCccccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHH---
Confidence 112345666665432 456889999999999999999 885 6999999999999888776422
Q ss_pred cchHHHHHHH-HHhCCCCCH-HHHHHHHHHhccCHHHHHHHHHHHH
Q 009640 413 HALFDVVESC-IRAGGALTP-AQIGEVLLRNRGNVDLAMKEVVSAM 456 (530)
Q Consensus 413 ~~~~~~i~~l-~~~~~~~sp-adi~~~l~~~~~d~~~al~~l~~~l 456 (530)
+... ......+++ ..+..++....+|...++..+....
T Consensus 181 ------l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~~~L~~~~ 220 (324)
T 3u61_B 181 ------LTEICKHEGIAIADMKVVAALVKKNFPDFRKTIGELDSYS 220 (324)
T ss_dssp ------HHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHHHHHHHHG
T ss_pred ------HHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 2222 223456666 6677776667778888877776655
No 34
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.77 E-value=7.7e-20 Score=193.80 Aligned_cols=163 Identities=15% Similarity=0.155 Sum_probs=73.2
Q ss_pred ccccCChhhhHHHHHHHHHHHcChhhHhhhcC-CCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccC-------
Q 009640 194 ETLALEPQLKKQITEDLTAFANGKEFYHRVGR-AWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVT------- 265 (530)
Q Consensus 194 ~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~-~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~------- 265 (530)
+.|+|++++|+.|...+..+..++..+..++. .+++++||+||||||||++++++|+.++.+++.++.+.+.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 46899999999999888776665555554443 3568999999999999999999999999999999876542
Q ss_pred -ChHHHHHHHHhcCCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhh
Q 009640 266 -DNSELRALLLQTTNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVT 344 (530)
Q Consensus 266 -~~~~L~~l~~~~~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (530)
....++.+|..+. .++++||+|.+.+. ........+
T Consensus 95 d~e~~lr~lf~~a~--~~~~~De~d~~~~~-----------------------------------------~~~~~e~rv 131 (444)
T 1g41_A 95 EVDSIIRDLTDSAM--KLVRQQEIAKNRAR-----------------------------------------AEDVAEERI 131 (444)
T ss_dssp CTHHHHHHHHHHHH--HHHHHHHHHSCC----------------------------------------------------
T ss_pred cHHHHHHHHHHHHH--hcchhhhhhhhhcc-----------------------------------------chhhHHHHH
Confidence 2455677766542 23447777765210 112334678
Q ss_pred HHHHhhhccCCccCCCCCeEEEEE-eCCCCCCChhhhcCCceeEEEEeCCCCHH-HHHHHH
Q 009640 345 LSGLLNFTDGLWSCCSEEKIIVFT-TNHRDSVDPALIRCGRMDVHVSLGTCGPH-AFKVLA 403 (530)
Q Consensus 345 ls~LLn~lDgl~s~~~~~~ivI~T-TN~~~~LDpALlRpGR~d~~I~~~~p~~~-~r~~i~ 403 (530)
++.||+.|||+.+. .. + +++ ||+++.|||||+||||||++|+++.|+.. .+.+|+
T Consensus 132 l~~LL~~~dg~~~~--~~-v-~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 132 LDALLPPAKNQWGE--VE-N-HDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp -------------------------------------------------------------
T ss_pred HHHHHHHhhccccc--cc-c-ccccccCHHHHHHHHHcCCCcceEEEEcCCCCccchhhhh
Confidence 99999999999763 22 3 444 99999999999999999999999999998 666665
No 35
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.77 E-value=1e-17 Score=170.29 Aligned_cols=194 Identities=17% Similarity=0.158 Sum_probs=143.7
Q ss_pred CCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccCC
Q 009640 187 FRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVTD 266 (530)
Q Consensus 187 ~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~~ 266 (530)
..+|.+|++++|.+..++.+...+....... ....++||+||||||||++|+++|+.++.+++.++...+..
T Consensus 5 ~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~--------~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~ 76 (324)
T 1hqc_A 5 ALRPKTLDEYIGQERLKQKLRVYLEAAKARK--------EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK 76 (324)
T ss_dssp CCCCCSTTTCCSCHHHHHHHHHHHHHHHHHC--------SCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS
T ss_pred ccCcccHHHhhCHHHHHHHHHHHHHHHHccC--------CCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC
Confidence 3467799999999999888888776554211 12468999999999999999999999999999999888888
Q ss_pred hHHHHHHHHh-cCCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhH
Q 009640 267 NSELRALLLQ-TTNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTL 345 (530)
Q Consensus 267 ~~~L~~l~~~-~~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 345 (530)
..++...|.. ...+++|||||||.+.. ...
T Consensus 77 ~~~l~~~l~~~~~~~~~l~lDEi~~l~~-------------------------------------------------~~~ 107 (324)
T 1hqc_A 77 PGDLAAILANSLEEGDILFIDEIHRLSR-------------------------------------------------QAE 107 (324)
T ss_dssp HHHHHHHHTTTCCTTCEEEETTTTSCCH-------------------------------------------------HHH
T ss_pred hHHHHHHHHHhccCCCEEEEECCccccc-------------------------------------------------chH
Confidence 8888888887 67889999999998721 112
Q ss_pred HHHhhhccCCc--------c------CCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcC
Q 009640 346 SGLLNFTDGLW--------S------CCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIES 411 (530)
Q Consensus 346 s~LLn~lDgl~--------s------~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~ 411 (530)
..|++.++... . .....+++|+|||.+..++++|.+ ||+..+.++.|+.+++..++..++....
T Consensus 108 ~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~ 185 (324)
T 1hqc_A 108 EHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLG 185 (324)
T ss_dssp HHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcC
Confidence 23333333211 0 001347899999999999999998 9999999999999999999998875433
Q ss_pred ccchHHHHHHHHHhCCCCCHHHHHHHHHH
Q 009640 412 HHALFDVVESCIRAGGALTPAQIGEVLLR 440 (530)
Q Consensus 412 ~~~~~~~i~~l~~~~~~~spadi~~~l~~ 440 (530)
.....+.++.++..+ .-.|.++.+++..
T Consensus 186 ~~~~~~~~~~l~~~~-~G~~r~l~~~l~~ 213 (324)
T 1hqc_A 186 VRITEEAALEIGRRS-RGTMRVAKRLFRR 213 (324)
T ss_dssp CCCCHHHHHHHHHHS-CSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHc-cCCHHHHHHHHHH
Confidence 332234455555543 3456677666654
No 36
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.75 E-value=2.8e-17 Score=165.39 Aligned_cols=219 Identities=16% Similarity=0.192 Sum_probs=142.4
Q ss_pred ccccCChhhhHHHHHHHHHHHcChhhHhhh-cCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccCC------
Q 009640 194 ETLALEPQLKKQITEDLTAFANGKEFYHRV-GRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVTD------ 266 (530)
Q Consensus 194 ~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~-g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~~------ 266 (530)
+.++|++++++.|...+............. +...+.++|||||||||||++++++|+.++.+++.++.+.+..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 357899999999988887654333222111 1123578999999999999999999999999999998876532
Q ss_pred --hHHHHHHHHhc-------CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCC
Q 009640 267 --NSELRALLLQT-------TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNG 337 (530)
Q Consensus 267 --~~~L~~l~~~~-------~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 337 (530)
...+..++... ..++||||||||.+.... .....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~-------------------------------------~~~~~ 137 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKG-------------------------------------EYSGA 137 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCS-------------------------------------SCCSS
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccc-------------------------------------ccccc
Confidence 23466666543 247999999999973100 00001
Q ss_pred CcchhhhHHHHhhhccCCccC------CCCCeEEEEE----eCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhh
Q 009640 338 EESGRVTLSGLLNFTDGLWSC------CSEEKIIVFT----TNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYL 407 (530)
Q Consensus 338 ~~~~~~~ls~LLn~lDgl~s~------~~~~~ivI~T----TN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l 407 (530)
+.......+.|+..+++.... ....++||+| ++.+..++|+|++ ||+.+|+|++|+.+++..|++..+
T Consensus 138 ~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~ 215 (310)
T 1ofh_A 138 DVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPH 215 (310)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSST
T ss_pred chhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhH
Confidence 111223467788888864210 1245778887 5678899999999 999999999999999999998543
Q ss_pred CCcCccchHHHHHHHHHhC---CCCCHHHHHHHHHHh--------ccCHHHHHHHHHHHH
Q 009640 408 GIESHHALFDVVESCIRAG---GALTPAQIGEVLLRN--------RGNVDLAMKEVVSAM 456 (530)
Q Consensus 408 ~~~~~~~~~~~i~~l~~~~---~~~spadi~~~l~~~--------~~d~~~al~~l~~~l 456 (530)
.. ........+... ..++++.+..+.... .+++..+.+.+...+
T Consensus 216 ~~-----~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~ 270 (310)
T 1ofh_A 216 AS-----LTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLM 270 (310)
T ss_dssp TC-----HHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHS
T ss_pred HH-----HHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHH
Confidence 21 222222222211 247777766666544 345555444443333
No 37
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.73 E-value=1.1e-16 Score=151.69 Aligned_cols=187 Identities=16% Similarity=0.195 Sum_probs=131.7
Q ss_pred cCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc-----CCcEEEE
Q 009640 185 VPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL-----CYDVYDL 259 (530)
Q Consensus 185 ~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l-----~~~i~~l 259 (530)
....+|.+|++++|.++.++.+.+.+.. . ...++||+||||||||++++++++.+ ...++.+
T Consensus 8 ~~~~~p~~~~~~~g~~~~~~~l~~~l~~----~---------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~ 74 (226)
T 2chg_A 8 VEKYRPRTLDEVVGQDEVIQRLKGYVER----K---------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEM 74 (226)
T ss_dssp HHHTSCSSGGGCCSCHHHHHHHHHHHHT----T---------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEE
T ss_pred HHhcCCCCHHHHcCcHHHHHHHHHHHhC----C---------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEe
Confidence 4456788999999998887777665532 1 12359999999999999999999986 4567888
Q ss_pred ecCccCChHHHHHHHHh--------cCCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCC
Q 009640 260 ELTKVTDNSELRALLLQ--------TTNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGN 331 (530)
Q Consensus 260 ~l~~~~~~~~L~~l~~~--------~~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 331 (530)
+.....+...+...+.. ...+.||||||+|.+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-------------------------------------- 116 (226)
T 2chg_A 75 NASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA-------------------------------------- 116 (226)
T ss_dssp ETTCTTCHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH--------------------------------------
T ss_pred ccccccChHHHHHHHHHHhcccCCCccCceEEEEeChhhcCH--------------------------------------
Confidence 87766555555444332 15689999999998721
Q ss_pred CCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcC
Q 009640 332 NNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIES 411 (530)
Q Consensus 332 ~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~ 411 (530)
.....|+..++.. ....++|+|||.++.+++++.+ |+. .|+++.|+.++...++..++...
T Consensus 117 -----------~~~~~l~~~l~~~----~~~~~~i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~- 177 (226)
T 2chg_A 117 -----------DAQAALRRTMEMY----SKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKE- 177 (226)
T ss_dssp -----------HHHHHHHHHHHHT----TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHH-
T ss_pred -----------HHHHHHHHHHHhc----CCCCeEEEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHc-
Confidence 1234455555532 3467889999999999999999 887 89999999999999888765321
Q ss_pred ccchHHHHHHHHHhCCCCCHHHHHHHHHHhccCHHHHHHHHHHH
Q 009640 412 HHALFDVVESCIRAGGALTPAQIGEVLLRNRGNVDLAMKEVVSA 455 (530)
Q Consensus 412 ~~~~~~~i~~l~~~~~~~spadi~~~l~~~~~d~~~al~~l~~~ 455 (530)
...+++..+..+.....+++..+++.+...
T Consensus 178 --------------~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~ 207 (226)
T 2chg_A 178 --------------GVKITEDGLEALIYISGGDFRKAINALQGA 207 (226)
T ss_dssp --------------TCCBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --------------CCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 223555555555555556666555544433
No 38
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.73 E-value=5.1e-17 Score=161.71 Aligned_cols=198 Identities=13% Similarity=0.129 Sum_probs=125.1
Q ss_pred ccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCcc-C--C----
Q 009640 194 ETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKV-T--D---- 266 (530)
Q Consensus 194 ~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~-~--~---- 266 (530)
..+.+.....+.+......+. ......+...++++|||||||||||++|+++|+.++.+++.++.... . .
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~---~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~ 109 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLV---QQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAK 109 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHH---HHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHH---HHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHH
Confidence 345666555555555322221 11222234556899999999999999999999999999999876542 1 1
Q ss_pred hHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhh
Q 009640 267 NSELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVT 344 (530)
Q Consensus 267 ~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (530)
...++.+|..+ ..++||||||||.+++... .........
T Consensus 110 ~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~---------------------------------------~~~~~~~~~ 150 (272)
T 1d2n_A 110 CQAMKKIFDDAYKSQLSCVVVDDIERLLDYVP---------------------------------------IGPRFSNLV 150 (272)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECCHHHHTTCBT---------------------------------------TTTBCCHHH
T ss_pred HHHHHHHHHHHHhcCCcEEEEEChhhhhccCC---------------------------------------CChhHHHHH
Confidence 13466677664 5689999999999852100 011223456
Q ss_pred HHHHhhhccCCccCCCCCeEEEEEeCCCCCCCh-hhhcCCceeEEEEeCCCCH-HHHHHHHHHhhCCcCccchHHHHHHH
Q 009640 345 LSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDP-ALIRCGRMDVHVSLGTCGP-HAFKVLAKNYLGIESHHALFDVVESC 422 (530)
Q Consensus 345 ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDp-ALlRpGR~d~~I~~~~p~~-~~r~~i~~~~l~~~~~~~~~~~i~~l 422 (530)
+..|+..+++.... +..++||+|||.++.||+ .+.+ ||+..|++|.++. ++...++...... ..+.+..+
T Consensus 151 l~~L~~~~~~~~~~-~~~~~ii~ttn~~~~l~~~~l~~--rf~~~i~~p~l~~r~~i~~i~~~~~~~-----~~~~~~~l 222 (272)
T 1d2n_A 151 LQALLVLLKKAPPQ-GRKLLIIGTTSRKDVLQEMEMLN--AFSTTIHVPNIATGEQLLEALELLGNF-----KDKERTTI 222 (272)
T ss_dssp HHHHHHHTTCCCST-TCEEEEEEEESCHHHHHHTTCTT--TSSEEEECCCEEEHHHHHHHHHHHTCS-----CHHHHHHH
T ss_pred HHHHHHHhcCccCC-CCCEEEEEecCChhhcchhhhhc--ccceEEcCCCccHHHHHHHHHHhcCCC-----CHHHHHHH
Confidence 67777777776432 456789999999999988 4555 9999999987665 5555555442211 12234444
Q ss_pred HHhCCCC----CHHHHHHHHHHh
Q 009640 423 IRAGGAL----TPAQIGEVLLRN 441 (530)
Q Consensus 423 ~~~~~~~----spadi~~~l~~~ 441 (530)
+....++ ...++.+++..+
T Consensus 223 ~~~~~g~~~~g~ir~l~~~l~~a 245 (272)
T 1d2n_A 223 AQQVKGKKVWIGIKKLLMLIEMS 245 (272)
T ss_dssp HHHHTTSEEEECHHHHHHHHHHH
T ss_pred HHHhcCCCccccHHHHHHHHHHH
Confidence 4444444 445555555543
No 39
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.72 E-value=2e-16 Score=163.64 Aligned_cols=157 Identities=17% Similarity=0.187 Sum_probs=109.0
Q ss_pred CCC-CcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCC--cEEEEecCccC
Q 009640 189 HPS-TFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCY--DVYDLELTKVT 265 (530)
Q Consensus 189 ~~~-~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~--~i~~l~l~~~~ 265 (530)
.|. +|++++|.+..++.+...+..... |...++++|||||||||||++|+++|+.++. +++.++...+.
T Consensus 38 ~p~~~~~~ivG~~~~~~~l~~l~~~~~~--------~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 109 (368)
T 3uk6_A 38 EPRQASQGMVGQLAARRAAGVVLEMIRE--------GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIF 109 (368)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHHHT--------TCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGS
T ss_pred CcCcchhhccChHHHHHHHHHHHHHHHc--------CCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhh
Confidence 444 499999999998876654443332 2333579999999999999999999999975 56666543210
Q ss_pred --------------------------------------------------C-----hHHHHHHHHhc-----------CC
Q 009640 266 --------------------------------------------------D-----NSELRALLLQT-----------TN 279 (530)
Q Consensus 266 --------------------------------------------------~-----~~~L~~l~~~~-----------~~ 279 (530)
. ...++..+... ..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~ 189 (368)
T 3uk6_A 110 SLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEII 189 (368)
T ss_dssp CSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---C
T ss_pred hcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhcccccc
Confidence 1 22344444322 12
Q ss_pred CeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCC
Q 009640 280 RSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCC 359 (530)
Q Consensus 280 ~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~ 359 (530)
|+||||||||.+- ....+.|+..++...
T Consensus 190 ~~vl~IDEi~~l~-------------------------------------------------~~~~~~L~~~le~~~--- 217 (368)
T 3uk6_A 190 PGVLFIDEVHMLD-------------------------------------------------IESFSFLNRALESDM--- 217 (368)
T ss_dssp BCEEEEESGGGSB-------------------------------------------------HHHHHHHHHHTTCTT---
T ss_pred CceEEEhhccccC-------------------------------------------------hHHHHHHHHHhhCcC---
Confidence 6899999999872 124556777665432
Q ss_pred CCCeEEEEEe-----------CCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCC
Q 009640 360 SEEKIIVFTT-----------NHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGI 409 (530)
Q Consensus 360 ~~~~ivI~TT-----------N~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~ 409 (530)
..+++++|. |.+..++++|++ ||.. |+|++|+.+++..+++.++..
T Consensus 218 -~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~~-i~~~~~~~~e~~~il~~~~~~ 274 (368)
T 3uk6_A 218 -APVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLLI-VSTTPYSEKDTKQILRIRCEE 274 (368)
T ss_dssp -CCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEEE-EEECCCCHHHHHHHHHHHHHH
T ss_pred -CCeeeeecccceeeeeccCCCCcccCCHHHHh--hccE-EEecCCCHHHHHHHHHHHHHH
Confidence 234433333 358899999999 9977 899999999999999987654
No 40
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.71 E-value=7.1e-16 Score=147.75 Aligned_cols=158 Identities=18% Similarity=0.286 Sum_probs=117.7
Q ss_pred CccccCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCC------
Q 009640 181 GWVSVPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCY------ 254 (530)
Q Consensus 181 ~w~~~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~------ 254 (530)
.| .....|..|++++|.+...+.+...+.. + ..+..+||+||||||||++++++++.+..
T Consensus 12 ~~--~~~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~ 77 (250)
T 1njg_A 12 VL--ARKWRPQTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA 77 (250)
T ss_dssp CH--HHHTCCCSGGGCCSCHHHHHHHHHHHHH-----------T-CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS
T ss_pred HH--hhccCCccHHHHhCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC
Confidence 45 3456788899999999888877776542 1 11357999999999999999999998743
Q ss_pred ------------------cEEEEecCccCChHHHHHHHHhc------CCCeEEEEcCccchhhhhhhhhhcccCCccccc
Q 009640 255 ------------------DVYDLELTKVTDNSELRALLLQT------TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAK 310 (530)
Q Consensus 255 ------------------~i~~l~l~~~~~~~~L~~l~~~~------~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~ 310 (530)
+++.++.........++.++... ..+.||||||+|.+-
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~------------------ 139 (250)
T 1njg_A 78 TPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS------------------ 139 (250)
T ss_dssp SCCSCSHHHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC------------------
T ss_pred CCCcccHHHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECccccc------------------
Confidence 34555444333445567777654 257899999999861
Q ss_pred cccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEE
Q 009640 311 TKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVS 390 (530)
Q Consensus 311 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~ 390 (530)
...+..|+..++.. ....++|+|||.++.+++++.+ |+ ..|+
T Consensus 140 -------------------------------~~~~~~l~~~l~~~----~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~ 181 (250)
T 1njg_A 140 -------------------------------RHSFNALLKTLEEP----PEHVKFLLATTDPQKLPVTILS--RC-LQFH 181 (250)
T ss_dssp -------------------------------HHHHHHHHHHHHSC----CTTEEEEEEESCGGGSCHHHHT--TS-EEEE
T ss_pred -------------------------------HHHHHHHHHHHhcC----CCceEEEEEeCChHhCCHHHHH--Hh-hhcc
Confidence 12345667776643 3568899999999999999998 64 6899
Q ss_pred eCCCCHHHHHHHHHHhhC
Q 009640 391 LGTCGPHAFKVLAKNYLG 408 (530)
Q Consensus 391 ~~~p~~~~r~~i~~~~l~ 408 (530)
++.++.++...++..++.
T Consensus 182 l~~l~~~e~~~~l~~~~~ 199 (250)
T 1njg_A 182 LKALDVEQIRHQLEHILN 199 (250)
T ss_dssp CCCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999988764
No 41
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.70 E-value=1.7e-16 Score=172.50 Aligned_cols=172 Identities=19% Similarity=0.312 Sum_probs=120.1
Q ss_pred CCCccccCCCCCCCcccccCChhhhHHHHHHHHHHHcC-hhhHhhhcC---CCCceEEEECCCCCChhHHHHHHHHHcCC
Q 009640 179 DSGWVSVPFRHPSTFETLALEPQLKKQITEDLTAFANG-KEFYHRVGR---AWKRGYLLYGPPGSGKSSLIAAMANYLCY 254 (530)
Q Consensus 179 ~~~w~~~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~-~~~y~~~g~---~~~rG~LL~GPPGTGKTsLa~AiA~~l~~ 254 (530)
...| +..+.|.+|++++|.++.++.|...+..+... +..|...|. +..+++||+||||||||++|+++|+++++
T Consensus 26 ~~lW--~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~ 103 (516)
T 1sxj_A 26 DKLW--TVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGY 103 (516)
T ss_dssp CCCH--HHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCCc--ccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3468 56688999999999999999988888765432 233333333 35689999999999999999999999999
Q ss_pred cEEEEecCccCChHHHHHHHH-------------h-------cCCCeEEEEcCccchhhhhhhhhhcccCCccccccccc
Q 009640 255 DVYDLELTKVTDNSELRALLL-------------Q-------TTNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRS 314 (530)
Q Consensus 255 ~i~~l~l~~~~~~~~L~~l~~-------------~-------~~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~ 314 (530)
+++.++.+.......+...+. . ...++||||||+|.+..
T Consensus 104 ~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~--------------------- 162 (516)
T 1sxj_A 104 DILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSG--------------------- 162 (516)
T ss_dssp EEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCT---------------------
T ss_pred CEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccch---------------------
Confidence 999999888766544433322 1 14689999999998731
Q ss_pred hhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCC--CCCCChhhhcCCceeEEEEeC
Q 009640 315 SSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNH--RDSVDPALIRCGRMDVHVSLG 392 (530)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~--~~~LDpALlRpGR~d~~I~~~ 392 (530)
. .+..+..|++.++.. +..||++||. ...++ ++. |+...|.|+
T Consensus 163 ----------------------~---~~~~l~~L~~~l~~~------~~~iIli~~~~~~~~l~-~l~---~r~~~i~f~ 207 (516)
T 1sxj_A 163 ----------------------G---DRGGVGQLAQFCRKT------STPLILICNERNLPKMR-PFD---RVCLDIQFR 207 (516)
T ss_dssp ----------------------T---STTHHHHHHHHHHHC------SSCEEEEESCTTSSTTG-GGT---TTSEEEECC
T ss_pred ----------------------h---hHHHHHHHHHHHHhc------CCCEEEEEcCCCCccch-hhH---hceEEEEeC
Confidence 0 112345566666521 1224444443 33443 343 445689999
Q ss_pred CCCHHHHHHHHHHhhC
Q 009640 393 TCGPHAFKVLAKNYLG 408 (530)
Q Consensus 393 ~p~~~~r~~i~~~~l~ 408 (530)
.|+.+++..++...+.
T Consensus 208 ~~~~~~~~~~L~~i~~ 223 (516)
T 1sxj_A 208 RPDANSIKSRLMTIAI 223 (516)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999998877653
No 42
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.70 E-value=4.5e-16 Score=170.18 Aligned_cols=161 Identities=20% Similarity=0.186 Sum_probs=113.5
Q ss_pred CcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccCChH---
Q 009640 192 TFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVTDNS--- 268 (530)
Q Consensus 192 ~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~~~~--- 268 (530)
..+++.|.+++++.+.+.+.....+... ....+||+||||||||+|+++||+.++.++..+++..+....
T Consensus 79 l~~di~G~~~vk~~i~~~~~l~~~~~~~-------~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~ 151 (543)
T 3m6a_A 79 LDEEHHGLEKVKERILEYLAVQKLTKSL-------KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIR 151 (543)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHHHHSSSC-------CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhcccC-------CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhh
Confidence 3466899999998887655433222211 245799999999999999999999999999999877653322
Q ss_pred ------------HHHHHHHhc-CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCC
Q 009640 269 ------------ELRALLLQT-TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNN 335 (530)
Q Consensus 269 ------------~L~~l~~~~-~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 335 (530)
.+...|..+ ....||||||||.+...
T Consensus 152 g~~~~~ig~~~~~~~~~~~~a~~~~~vl~lDEid~l~~~----------------------------------------- 190 (543)
T 3m6a_A 152 GHRRTYVGAMPGRIIQGMKKAGKLNPVFLLDEIDKMSSD----------------------------------------- 190 (543)
T ss_dssp ------------CHHHHHHTTCSSSEEEEEEESSSCC-------------------------------------------
T ss_pred hHHHHHhccCchHHHHHHHHhhccCCEEEEhhhhhhhhh-----------------------------------------
Confidence 233445555 24459999999997310
Q ss_pred CCCcchhhhHHHHhhhccCCccC-----------CCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHH
Q 009640 336 NGEESGRVTLSGLLNFTDGLWSC-----------CSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAK 404 (530)
Q Consensus 336 ~~~~~~~~~ls~LLn~lDgl~s~-----------~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~ 404 (530)
......+.||..||..... .-..++||+|||.++.|||+|++ ||+ .|+|+.|+.+++..|++
T Consensus 191 ----~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~ 263 (543)
T 3m6a_A 191 ----FRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVK 263 (543)
T ss_dssp -----------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHH
T ss_pred ----hccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHH
Confidence 0011345577777643311 01457899999999999999999 996 69999999999999999
Q ss_pred Hhh
Q 009640 405 NYL 407 (530)
Q Consensus 405 ~~l 407 (530)
.++
T Consensus 264 ~~l 266 (543)
T 3m6a_A 264 DHL 266 (543)
T ss_dssp HTH
T ss_pred HHH
Confidence 987
No 43
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.69 E-value=2.6e-16 Score=158.81 Aligned_cols=158 Identities=15% Similarity=0.187 Sum_probs=116.4
Q ss_pred CccccCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc-----CCc
Q 009640 181 GWVSVPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL-----CYD 255 (530)
Q Consensus 181 ~w~~~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l-----~~~ 255 (530)
.| +..+.|.+|++++|.++.++.+...+. . |. ..+||||||||||||++++++|+.+ +.+
T Consensus 6 ~~--~~k~~p~~~~~~~g~~~~~~~l~~~l~----~-------~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~ 70 (319)
T 2chq_A 6 IW--VEKYRPRTLDEVVGQDEVIQRLKGYVE----R-------KN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDN 70 (319)
T ss_dssp CT--TTTTSCSSGGGSCSCHHHHHHHHTTTT----T-------TC--CCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHH
T ss_pred cH--HHhcCCCCHHHHhCCHHHHHHHHHHHh----C-------CC--CCeEEEECcCCcCHHHHHHHHHHHhcCCcccCC
Confidence 56 667889999999999988776665442 2 11 2349999999999999999999987 445
Q ss_pred EEEEecCccCChHHHHHH---HH-hc----CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccc
Q 009640 256 VYDLELTKVTDNSELRAL---LL-QT----TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASS 327 (530)
Q Consensus 256 i~~l~l~~~~~~~~L~~l---~~-~~----~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 327 (530)
++.++.+...+...++.. +. .. ..+.||+|||+|.+.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~----------------------------------- 115 (319)
T 2chq_A 71 FIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALT----------------------------------- 115 (319)
T ss_dssp CEEEETTSTTCTTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSC-----------------------------------
T ss_pred eEEEeCccccChHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCC-----------------------------------
Confidence 778877655332222222 22 11 358999999999872
Q ss_pred cCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhh
Q 009640 328 TCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYL 407 (530)
Q Consensus 328 ~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l 407 (530)
......|+..++.. ....++|++||.+..+++++.+ |+. .|.|+.|+.+++..++..++
T Consensus 116 --------------~~~~~~L~~~le~~----~~~~~~i~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~ 174 (319)
T 2chq_A 116 --------------ADAQAALRRTMEMY----SKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEIC 174 (319)
T ss_dssp --------------HHHHHTTGGGTSSS----SSSEEEEEEESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHhc----CCCCeEEEEeCChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHH
Confidence 11234567777643 3567899999999999999999 775 79999999999999988776
Q ss_pred CC
Q 009640 408 GI 409 (530)
Q Consensus 408 ~~ 409 (530)
..
T Consensus 175 ~~ 176 (319)
T 2chq_A 175 EK 176 (319)
T ss_dssp HT
T ss_pred HH
Confidence 43
No 44
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.68 E-value=6.5e-16 Score=164.95 Aligned_cols=194 Identities=15% Similarity=0.217 Sum_probs=136.2
Q ss_pred CCCCCCCcccccCChhhh---HHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecC
Q 009640 186 PFRHPSTFETLALEPQLK---KQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELT 262 (530)
Q Consensus 186 ~~~~~~~f~~l~~~~~~k---~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~ 262 (530)
....|.+|++++|++++. ..+...+.. . . ..++|||||||||||+++++||+.++.+++.++..
T Consensus 18 ~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~----~-------~--~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~ 84 (447)
T 3pvs_A 18 ARMRPENLAQYIGQQHLLAAGKPLPRAIEA----G-------H--LHSMILWGPPGTGKTTLAEVIARYANADVERISAV 84 (447)
T ss_dssp HHTCCCSTTTCCSCHHHHSTTSHHHHHHHH----T-------C--CCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETT
T ss_pred HHhCCCCHHHhCCcHHHHhchHHHHHHHHc----C-------C--CcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEec
Confidence 346788999999999877 444444432 1 1 25899999999999999999999999999999876
Q ss_pred ccCChHHHHHHHHhc------CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCC
Q 009640 263 KVTDNSELRALLLQT------TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNN 336 (530)
Q Consensus 263 ~~~~~~~L~~l~~~~------~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 336 (530)
.. +..+++.++..+ ..++||||||||.+..
T Consensus 85 ~~-~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~------------------------------------------- 120 (447)
T 3pvs_A 85 TS-GVKEIREAIERARQNRNAGRRTILFVDEVHRFNK------------------------------------------- 120 (447)
T ss_dssp TC-CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC---------------------------------------------
T ss_pred cC-CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCH-------------------------------------------
Confidence 53 445666666543 4689999999998720
Q ss_pred CCcchhhhHHHHhhhccCCccCCCCCeEEEEEe--CCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCccc
Q 009640 337 GEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTT--NHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHHA 414 (530)
Q Consensus 337 ~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TT--N~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~ 414 (530)
.....||..++. ..+++|++| |....++++|++ |+. .+.|+.|+.+++..++..++......
T Consensus 121 ------~~q~~LL~~le~------~~v~lI~att~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~- 184 (447)
T 3pvs_A 121 ------SQQDAFLPHIED------GTITFIGATTENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRG- 184 (447)
T ss_dssp ----------CCHHHHHT------TSCEEEEEESSCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTS-
T ss_pred ------HHHHHHHHHHhc------CceEEEecCCCCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhh-
Confidence 012346666653 345666655 455689999999 876 57899999999999999887642211
Q ss_pred hHHHHHHHHHhCCCCCHHHHHHHHHHhccCHHHHHHHHHHHHHHh
Q 009640 415 LFDVVESCIRAGGALTPAQIGEVLLRNRGNVDLAMKEVVSAMQAK 459 (530)
Q Consensus 415 ~~~~i~~l~~~~~~~spadi~~~l~~~~~d~~~al~~l~~~l~~~ 459 (530)
. -.....+++..+..++....+|+..++..+..+....
T Consensus 185 ~-------~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~a~~~a 222 (447)
T 3pvs_A 185 Y-------GGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMA 222 (447)
T ss_dssp S-------TTSSEECCHHHHHHHHHHHCSCHHHHHHHHHHHHHHS
T ss_pred h-------ccccCcCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhc
Confidence 0 0012346777777676667778877777666655443
No 45
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.66 E-value=1.4e-15 Score=153.94 Aligned_cols=158 Identities=15% Similarity=0.231 Sum_probs=115.6
Q ss_pred CccccCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcC-----Cc
Q 009640 181 GWVSVPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLC-----YD 255 (530)
Q Consensus 181 ~w~~~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~-----~~ 255 (530)
+| +..+.|.+|++++|.++.++.+...+.. |. ..++|||||||||||++++++|+.+. ..
T Consensus 14 ~~--~~k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~--~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~ 78 (327)
T 1iqp_A 14 PW--VEKYRPQRLDDIVGQEHIVKRLKHYVKT-----------GS--MPHLLFAGPPGVGKTTAALALARELFGENWRHN 78 (327)
T ss_dssp CH--HHHTCCCSTTTCCSCHHHHHHHHHHHHH-----------TC--CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHH
T ss_pred ch--hhccCCCCHHHhhCCHHHHHHHHHHHHc-----------CC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCc
Confidence 67 5567899999999999988877765542 11 23599999999999999999999863 34
Q ss_pred EEEEecCccCChHHHHHHHH---h-c----CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccc
Q 009640 256 VYDLELTKVTDNSELRALLL---Q-T----TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASS 327 (530)
Q Consensus 256 i~~l~l~~~~~~~~L~~l~~---~-~----~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 327 (530)
++.++.+...+...++..+. . . ..+.||+|||+|.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~----------------------------------- 123 (327)
T 1iqp_A 79 FLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALT----------------------------------- 123 (327)
T ss_dssp EEEEETTCHHHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSC-----------------------------------
T ss_pred eEEeeccccCchHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCC-----------------------------------
Confidence 67777655322222222221 1 1 458899999999872
Q ss_pred cCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhh
Q 009640 328 TCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYL 407 (530)
Q Consensus 328 ~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l 407 (530)
....+.|+..++.. ....++|+|||.++.+++++.+ |+. .+.|++++.++...++..++
T Consensus 124 --------------~~~~~~L~~~le~~----~~~~~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~ 182 (327)
T 1iqp_A 124 --------------QDAQQALRRTMEMF----SSNVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIA 182 (327)
T ss_dssp --------------HHHHHHHHHHHHHT----TTTEEEEEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHhc----CCCCeEEEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHH
Confidence 11345566666532 3457888999999999999998 876 79999999999999888776
Q ss_pred CC
Q 009640 408 GI 409 (530)
Q Consensus 408 ~~ 409 (530)
..
T Consensus 183 ~~ 184 (327)
T 1iqp_A 183 EN 184 (327)
T ss_dssp HT
T ss_pred Hh
Confidence 43
No 46
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.65 E-value=2.4e-16 Score=145.92 Aligned_cols=152 Identities=17% Similarity=0.204 Sum_probs=105.1
Q ss_pred CCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc----------CCcEEE
Q 009640 189 HPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL----------CYDVYD 258 (530)
Q Consensus 189 ~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l----------~~~i~~ 258 (530)
.+..|++++|.++..+.+.+.+.. ..++++||+||||||||++++++|+.+ +.+++.
T Consensus 17 ~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~ 83 (195)
T 1jbk_A 17 EQGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 83 (195)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEE
T ss_pred hhccccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEE
Confidence 456789999988877666654321 224689999999999999999999997 678888
Q ss_pred EecCccC----C----hHHHHHHHH---hcCCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccc
Q 009640 259 LELTKVT----D----NSELRALLL---QTTNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASS 327 (530)
Q Consensus 259 l~l~~~~----~----~~~L~~l~~---~~~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 327 (530)
+++.... . ...+..++. ....++||+|||+|.+.+...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~------------------------------- 132 (195)
T 1jbk_A 84 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGK------------------------------- 132 (195)
T ss_dssp ECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT----------------------------------
T ss_pred eeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCc-------------------------------
Confidence 8765432 1 123444544 346789999999999842100
Q ss_pred cCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCC-----CCChhhhcCCceeEEEEeCCCCHHHHHHH
Q 009640 328 TCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRD-----SVDPALIRCGRMDVHVSLGTCGPHAFKVL 402 (530)
Q Consensus 328 ~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~-----~LDpALlRpGR~d~~I~~~~p~~~~r~~i 402 (530)
..........|...++ ..++.+|+|||.++ .+|++|++ ||+ .|+++.|+.+++.+|
T Consensus 133 ----------~~~~~~~~~~l~~~~~------~~~~~~i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~i 193 (195)
T 1jbk_A 133 ----------ADGAMDAGNMLKPALA------RGELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAI 193 (195)
T ss_dssp -------------CCCCHHHHHHHHH------TTSCCEEEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTT
T ss_pred ----------ccchHHHHHHHHHhhc------cCCeEEEEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHH
Confidence 0001112223333332 24567888888876 78999999 998 699999999999877
Q ss_pred H
Q 009640 403 A 403 (530)
Q Consensus 403 ~ 403 (530)
+
T Consensus 194 l 194 (195)
T 1jbk_A 194 L 194 (195)
T ss_dssp C
T ss_pred h
Confidence 5
No 47
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.65 E-value=2.1e-15 Score=152.40 Aligned_cols=188 Identities=13% Similarity=0.218 Sum_probs=130.0
Q ss_pred CCccccCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc-----CC
Q 009640 180 SGWVSVPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL-----CY 254 (530)
Q Consensus 180 ~~w~~~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l-----~~ 254 (530)
..| .....|.+|++++|.++.++.+...+. . |. ...+|||||||||||++++++|+.+ +.
T Consensus 9 ~~~--~~~~~p~~~~~~~g~~~~~~~l~~~l~----~-------~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~ 73 (323)
T 1sxj_B 9 LPW--VEKYRPQVLSDIVGNKETIDRLQQIAK----D-------GN--MPHMIISGMPGIGKTTSVHCLAHELLGRSYAD 73 (323)
T ss_dssp CCH--HHHTCCSSGGGCCSCTHHHHHHHHHHH----S-------CC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHH
T ss_pred CcH--HHhcCCCCHHHHHCCHHHHHHHHHHHH----c-------CC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccC
Confidence 356 455788999999999998887766543 1 11 1239999999999999999999986 45
Q ss_pred cEEEEecCccCChHHHHHHHHhc--------C-CCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccc
Q 009640 255 DVYDLELTKVTDNSELRALLLQT--------T-NRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIA 325 (530)
Q Consensus 255 ~i~~l~l~~~~~~~~L~~l~~~~--------~-~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~ 325 (530)
+++.++.+...+...++.++... . .+.||||||+|.+..
T Consensus 74 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~-------------------------------- 121 (323)
T 1sxj_B 74 GVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA-------------------------------- 121 (323)
T ss_dssp HEEEECTTSCCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH--------------------------------
T ss_pred CEEEecCccccChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH--------------------------------
Confidence 57777776654555565554421 2 378999999998721
Q ss_pred cccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHH
Q 009640 326 SSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKN 405 (530)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~ 405 (530)
.....|+..++.. ....++|++||.++.+++++.+ |+. .|.|+.|+.++...++..
T Consensus 122 -----------------~~~~~L~~~le~~----~~~~~~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~ 177 (323)
T 1sxj_B 122 -----------------GAQQALRRTMELY----SNSTRFAFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQ 177 (323)
T ss_dssp -----------------HHHHTTHHHHHHT----TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHhcc----CCCceEEEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHH
Confidence 1233455555432 3557888899999999999998 665 799999999999999887
Q ss_pred hhCCcCccchHHHHHHHHHhCCCCCHHHHHHHHHHhccCHHHHHHHHH
Q 009640 406 YLGIESHHALFDVVESCIRAGGALTPAQIGEVLLRNRGNVDLAMKEVV 453 (530)
Q Consensus 406 ~l~~~~~~~~~~~i~~l~~~~~~~spadi~~~l~~~~~d~~~al~~l~ 453 (530)
++... ...+++..+..++..+.+++..++..+.
T Consensus 178 ~~~~~---------------~~~~~~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 178 IIKLE---------------DVKYTNDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp HHHHH---------------TCCBCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHc---------------CCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 65321 1234454444444444555555555443
No 48
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.65 E-value=2.3e-15 Score=154.34 Aligned_cols=158 Identities=16% Similarity=0.222 Sum_probs=115.2
Q ss_pred CCccccCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcC------
Q 009640 180 SGWVSVPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLC------ 253 (530)
Q Consensus 180 ~~w~~~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~------ 253 (530)
..| +..++|.+|++++|.+++++.+...+ .... ..++|||||||||||++++++|+.++
T Consensus 25 ~~~--~~k~~p~~~~~i~g~~~~~~~l~~~l----~~~~---------~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~ 89 (353)
T 1sxj_D 25 QPW--VEKYRPKNLDEVTAQDHAVTVLKKTL----KSAN---------LPHMLFYGPPGTGKTSTILALTKELYGPDLMK 89 (353)
T ss_dssp -CH--HHHTCCSSTTTCCSCCTTHHHHHHHT----TCTT---------CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHT
T ss_pred ccH--HHhcCCCCHHHhhCCHHHHHHHHHHH----hcCC---------CCEEEEECCCCCCHHHHHHHHHHHhCCCcccc
Confidence 367 55678999999999999887666543 2211 23599999999999999999999864
Q ss_pred CcEEEEecCccCChHHHHHHH---Hh---------------cCCCeEEEEcCccchhhhhhhhhhcccCCccccccccch
Q 009640 254 YDVYDLELTKVTDNSELRALL---LQ---------------TTNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSS 315 (530)
Q Consensus 254 ~~i~~l~l~~~~~~~~L~~l~---~~---------------~~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~ 315 (530)
..+..++.+.......++..+ .. ...+.||+|||+|.+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~----------------------- 146 (353)
T 1sxj_D 90 SRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMT----------------------- 146 (353)
T ss_dssp TSEEEECSSSCCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSC-----------------------
T ss_pred cceEEEccccccchHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccC-----------------------
Confidence 467888877654444443332 11 1345799999999872
Q ss_pred hhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCC
Q 009640 316 SIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCG 395 (530)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~ 395 (530)
....+.|+..++... ....+|++||+++.++|++.+ |+. .|.|+.|+
T Consensus 147 --------------------------~~~~~~Ll~~le~~~----~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~ 193 (353)
T 1sxj_D 147 --------------------------ADAQSALRRTMETYS----GVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALD 193 (353)
T ss_dssp --------------------------HHHHHHHHHHHHHTT----TTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCC
T ss_pred --------------------------HHHHHHHHHHHHhcC----CCceEEEEeCchhhCcchhhc--cCc-eEEeCCCC
Confidence 112355666666432 346677899999999999999 886 79999999
Q ss_pred HHHHHHHHHHhhC
Q 009640 396 PHAFKVLAKNYLG 408 (530)
Q Consensus 396 ~~~r~~i~~~~l~ 408 (530)
.++...++...+.
T Consensus 194 ~~~~~~~l~~~~~ 206 (353)
T 1sxj_D 194 ASNAIDRLRFISE 206 (353)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999998887664
No 49
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.65 E-value=5e-15 Score=151.33 Aligned_cols=151 Identities=14% Similarity=0.134 Sum_probs=107.1
Q ss_pred cccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccCChHHHHH
Q 009640 193 FETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVTDNSELRA 272 (530)
Q Consensus 193 f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~~~~~L~~ 272 (530)
++++.|++++++.+...+.. ..++|||||||||||++++++|+.++.+++.++.+......++..
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g 90 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIG 90 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHE
T ss_pred ccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCC
Confidence 46788888888777665532 258999999999999999999999999999988754333333221
Q ss_pred HH--H-------hcCC---CeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcc
Q 009640 273 LL--L-------QTTN---RSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEES 340 (530)
Q Consensus 273 l~--~-------~~~~---~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (530)
.. . .... .+||||||||.+-
T Consensus 91 ~~~~~~~~~~~~~~~g~l~~~vl~iDEi~~~~------------------------------------------------ 122 (331)
T 2r44_A 91 TMIYNQHKGNFEVKKGPVFSNFILADEVNRSP------------------------------------------------ 122 (331)
T ss_dssp EEEEETTTTEEEEEECTTCSSEEEEETGGGSC------------------------------------------------
T ss_pred ceeecCCCCceEeccCcccccEEEEEccccCC------------------------------------------------
Confidence 10 0 0012 3799999999862
Q ss_pred hhhhHHHHhhhcc-------CCccCCCCCeEEEEEeCCCC-----CCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhC
Q 009640 341 GRVTLSGLLNFTD-------GLWSCCSEEKIIVFTTNHRD-----SVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLG 408 (530)
Q Consensus 341 ~~~~ls~LLn~lD-------gl~s~~~~~~ivI~TTN~~~-----~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~ 408 (530)
..+.+.|+..|+ |.........+||+|+|..+ .|+++|++ ||+.++++++|+.+++..|++..+.
T Consensus 123 -~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 123 -AKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSN 199 (331)
T ss_dssp -HHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccc
Confidence 112344444443 22211234567788888554 38999999 9999999999999999999999876
Q ss_pred C
Q 009640 409 I 409 (530)
Q Consensus 409 ~ 409 (530)
.
T Consensus 200 ~ 200 (331)
T 2r44_A 200 M 200 (331)
T ss_dssp T
T ss_pred c
Confidence 4
No 50
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.64 E-value=9.2e-16 Score=158.66 Aligned_cols=161 Identities=16% Similarity=0.175 Sum_probs=113.4
Q ss_pred CCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc---------CCcEEEEec
Q 009640 191 STFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL---------CYDVYDLEL 261 (530)
Q Consensus 191 ~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---------~~~i~~l~l 261 (530)
..+++++|.++..+.+...+...+.. ..+++++|+||||||||++++++++.+ +..++.++.
T Consensus 16 ~~p~~~~gr~~~~~~l~~~l~~~~~~---------~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (387)
T 2v1u_A 16 YVPDVLPHREAELRRLAEVLAPALRG---------EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA 86 (387)
T ss_dssp CCCSCCTTCHHHHHHHHHTTGGGTSS---------CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 34478899888877777755443322 224689999999999999999999998 788888886
Q ss_pred CccCCh----------------------HH-HHHHHH---hcCCCeEEEEcCccchhhhhhhhhhcccCCccccccccch
Q 009640 262 TKVTDN----------------------SE-LRALLL---QTTNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSS 315 (530)
Q Consensus 262 ~~~~~~----------------------~~-L~~l~~---~~~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~ 315 (530)
....+. .. +..++. ....++||||||+|.+...
T Consensus 87 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~--------------------- 145 (387)
T 2v1u_A 87 RHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKR--------------------- 145 (387)
T ss_dssp TTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHS---------------------
T ss_pred CcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhccc---------------------
Confidence 654321 22 222222 2245889999999998310
Q ss_pred hhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCC---CCCChhhhcCCceeE-EEEe
Q 009640 316 SIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHR---DSVDPALIRCGRMDV-HVSL 391 (530)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~---~~LDpALlRpGR~d~-~I~~ 391 (530)
......+..|++.++.... ...+++|+|||.+ +.+++++.+ |+.. .|+|
T Consensus 146 -----------------------~~~~~~l~~l~~~~~~~~~--~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l 198 (387)
T 2v1u_A 146 -----------------------PGGQDLLYRITRINQELGD--RVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVF 198 (387)
T ss_dssp -----------------------TTHHHHHHHHHHGGGCC-------CEEEEECSCSTTSSSSCHHHHT--TTTSEECCB
T ss_pred -----------------------CCCChHHHhHhhchhhcCC--CceEEEEEEECCCchHhhhCHHHHh--cCCCeEEee
Confidence 0123456667766654321 2467899999988 789999998 8874 8999
Q ss_pred CCCCHHHHHHHHHHhhC
Q 009640 392 GTCGPHAFKVLAKNYLG 408 (530)
Q Consensus 392 ~~p~~~~r~~i~~~~l~ 408 (530)
++++.++...+++..+.
T Consensus 199 ~~l~~~~~~~il~~~~~ 215 (387)
T 2v1u_A 199 PPYTAPQLRDILETRAE 215 (387)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999988764
No 51
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.64 E-value=2.6e-15 Score=151.49 Aligned_cols=160 Identities=16% Similarity=0.255 Sum_probs=113.7
Q ss_pred ccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecCccCChHHH
Q 009640 194 ETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELTKVTDNSEL 270 (530)
Q Consensus 194 ~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~~~~~~~~L 270 (530)
+.++|++.+++.|...+......-.. ...+...+||+||||||||++|+++|+.+ +.+++.++++.+......
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~----~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 92 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKD----PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 92 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSC----TTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCC----CCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccH
Confidence 35678888888888887765421100 00112469999999999999999999998 556888888776543333
Q ss_pred HHHH---------------Hh---cCCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCC
Q 009640 271 RALL---------------LQ---TTNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNN 332 (530)
Q Consensus 271 ~~l~---------------~~---~~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 332 (530)
..++ .. ....+||||||||.+-
T Consensus 93 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~---------------------------------------- 132 (311)
T 4fcw_A 93 SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAH---------------------------------------- 132 (311)
T ss_dssp HHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSC----------------------------------------
T ss_pred HHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcC----------------------------------------
Confidence 3332 11 1345899999999871
Q ss_pred CCCCCCcchhhhHHHHhhhccCCccCC-------CCCeEEEEEeCC--------------------------CCCCChhh
Q 009640 333 NNNNGEESGRVTLSGLLNFTDGLWSCC-------SEEKIIVFTTNH--------------------------RDSVDPAL 379 (530)
Q Consensus 333 ~~~~~~~~~~~~ls~LLn~lDgl~s~~-------~~~~ivI~TTN~--------------------------~~~LDpAL 379 (530)
....+.|+..|+.-.... -.+.+||+|||. ...++|+|
T Consensus 133 ---------~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 203 (311)
T 4fcw_A 133 ---------PDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEF 203 (311)
T ss_dssp ---------HHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHH
T ss_pred ---------HHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHH
Confidence 124456666665322100 136789999998 55789999
Q ss_pred hcCCceeEEEEeCCCCHHHHHHHHHHhhC
Q 009640 380 IRCGRMDVHVSLGTCGPHAFKVLAKNYLG 408 (530)
Q Consensus 380 lRpGR~d~~I~~~~p~~~~r~~i~~~~l~ 408 (530)
++ ||+..+.+.+|+.+++..|++.++.
T Consensus 204 ~~--R~~~~~~~~p~~~~~~~~i~~~~l~ 230 (311)
T 4fcw_A 204 LN--RLDEIVVFRPLTKEQIRQIVEIQMS 230 (311)
T ss_dssp HT--TCSEEEECCCCCHHHHHHHHHHHTH
T ss_pred Hh--cCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 98 9999999999999999999998875
No 52
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.64 E-value=8e-16 Score=159.64 Aligned_cols=176 Identities=21% Similarity=0.239 Sum_probs=119.3
Q ss_pred cccCChhhhHHHHHHHHHHHcChhhH-hhhcC-CCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccCC------
Q 009640 195 TLALEPQLKKQITEDLTAFANGKEFY-HRVGR-AWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVTD------ 266 (530)
Q Consensus 195 ~l~~~~~~k~~i~~~l~~~l~~~~~y-~~~g~-~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~~------ 266 (530)
.|+|++.+++.|...+.......... ...+. ..+.++||+||||||||++|++||+.++.+++.++++.+..
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 36899999999988886544322111 00111 24578999999999999999999999999999999876642
Q ss_pred --hHHHHHHHHhc------CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCC
Q 009640 267 --NSELRALLLQT------TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGE 338 (530)
Q Consensus 267 --~~~L~~l~~~~------~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (530)
...+..++... ..++||||||||.+... +.. .....+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~------------------~~~-----------------~~~~~~ 140 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRK------------------SDN-----------------PSITRD 140 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCC------------------SSC-----------------C---CH
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhccc------------------ccc-----------------cccccc
Confidence 23355555544 35789999999987310 000 000111
Q ss_pred cchhhhHHHHhhhccCCcc-----------------CCCCCeEEEEEeCCC----------CC-----------------
Q 009640 339 ESGRVTLSGLLNFTDGLWS-----------------CCSEEKIIVFTTNHR----------DS----------------- 374 (530)
Q Consensus 339 ~~~~~~ls~LLn~lDgl~s-----------------~~~~~~ivI~TTN~~----------~~----------------- 374 (530)
.....+.+.||..|||... -+..++++|+|+|.. ..
T Consensus 141 ~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~ 220 (363)
T 3hws_A 141 VSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKA 220 (363)
T ss_dssp HHHHHHHHHHHHHHHCC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCS
T ss_pred cchHHHHHHHHHHhcCceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccch
Confidence 1223478899999996421 012445666666642 11
Q ss_pred ------------------CChhhhcCCceeEEEEeCCCCHHHHHHHHHHhh
Q 009640 375 ------------------VDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYL 407 (530)
Q Consensus 375 ------------------LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l 407 (530)
++|+|+. |||..+.|.+|+.+.+..|+...+
T Consensus 221 ~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~~pl~~~~~~~I~~~~~ 269 (363)
T 3hws_A 221 SEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATLNELSEEALIQILKEPK 269 (363)
T ss_dssp CHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEECCCCCHHHHHHHHHSST
T ss_pred hhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeecCCCCHHHHHHHHHHHH
Confidence 7888888 999999999999999999988643
No 53
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.63 E-value=1.5e-14 Score=148.69 Aligned_cols=195 Identities=17% Similarity=0.180 Sum_probs=128.3
Q ss_pred cCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCcc
Q 009640 185 VPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKV 264 (530)
Q Consensus 185 ~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~ 264 (530)
+....+.+|+++.+++.+++.+...+..-.. .|. ....++|+||||||||||+++||+.++.++...+....
T Consensus 16 ~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~-------~~~-~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~ 87 (334)
T 1in4_A 16 VQFLRPKSLDEFIGQENVKKKLSLALEAAKM-------RGE-VLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVL 87 (334)
T ss_dssp -CTTSCSSGGGCCSCHHHHHHHHHHHHHHHH-------HTC-CCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTC
T ss_pred HHHcCCccHHHccCcHHHHHHHHHHHHHHHh-------cCC-CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHh
Confidence 4556788999999988777666554433211 111 23579999999999999999999999998887776665
Q ss_pred CChHHHHHHHHhcCCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhh
Q 009640 265 TDNSELRALLLQTTNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVT 344 (530)
Q Consensus 265 ~~~~~L~~l~~~~~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (530)
....++..++.....+.|++|||+|.+.....
T Consensus 88 ~~~~~l~~~~~~~~~~~v~~iDE~~~l~~~~~------------------------------------------------ 119 (334)
T 1in4_A 88 VKQGDMAAILTSLERGDVLFIDEIHRLNKAVE------------------------------------------------ 119 (334)
T ss_dssp CSHHHHHHHHHHCCTTCEEEEETGGGCCHHHH------------------------------------------------
T ss_pred cCHHHHHHHHHHccCCCEEEEcchhhcCHHHH------------------------------------------------
Confidence 56667777776666789999999998742000
Q ss_pred HHHHhhhccCCc------c--------CCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCc
Q 009640 345 LSGLLNFTDGLW------S--------CCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIE 410 (530)
Q Consensus 345 ls~LLn~lDgl~------s--------~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~ 410 (530)
..|+..+.... . ..-....++.+||++..|++++++ ||...+.|++++.+++..+++......
T Consensus 120 -e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~ 196 (334)
T 1in4_A 120 -ELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLM 196 (334)
T ss_dssp -HHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHc
Confidence 00111110000 0 001235677899999999999999 999999999999999999998765322
Q ss_pred CccchHHHHHHHHHhCCCCCHHHHHHHHH
Q 009640 411 SHHALFDVVESCIRAGGALTPAQIGEVLL 439 (530)
Q Consensus 411 ~~~~~~~~i~~l~~~~~~~spadi~~~l~ 439 (530)
......+.+..++... .=+|..+..+|.
T Consensus 197 ~~~~~~~~~~~ia~~~-~G~~R~a~~ll~ 224 (334)
T 1in4_A 197 DVEIEDAAAEMIAKRS-RGTPRIAIRLTK 224 (334)
T ss_dssp TCCBCHHHHHHHHHTS-TTCHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHhc-CCChHHHHHHHH
Confidence 1111223344444432 234455444443
No 54
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.63 E-value=1.6e-15 Score=146.30 Aligned_cols=160 Identities=17% Similarity=0.198 Sum_probs=104.8
Q ss_pred CCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcC---CcEEEEecC
Q 009640 186 PFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLC---YDVYDLELT 262 (530)
Q Consensus 186 ~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~---~~i~~l~l~ 262 (530)
...++.+|+++++.+ ..+.+.+.+..+...+ ..+++||+||||||||++++++|+.+. ..++.++..
T Consensus 20 ~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~---------~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 20 HLPDDETFTSYYPAA-GNDELIGALKSAASGD---------GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLG 89 (242)
T ss_dssp CCCTTCSTTTSCC---CCHHHHHHHHHHHHTC---------SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCCCCCChhhccCCC-CCHHHHHHHHHHHhCC---------CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 344557899998732 2234445555555432 247899999999999999999999884 778888776
Q ss_pred ccCChHHHHHHHHhcCCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchh
Q 009640 263 KVTDNSELRALLLQTTNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGR 342 (530)
Q Consensus 263 ~~~~~~~L~~l~~~~~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (530)
.+.. .+...+.....+.||||||+|.+.. . .
T Consensus 90 ~~~~--~~~~~~~~~~~~~vliiDe~~~~~~--------------------------------------------~---~ 120 (242)
T 3bos_A 90 IHAS--ISTALLEGLEQFDLICIDDVDAVAG--------------------------------------------H---P 120 (242)
T ss_dssp GGGG--SCGGGGTTGGGSSEEEEETGGGGTT--------------------------------------------C---H
T ss_pred HHHH--HHHHHHHhccCCCEEEEeccccccC--------------------------------------------C---H
Confidence 6532 1222333446789999999998721 0 0
Q ss_pred hhHHHHhhhccCCccCCCCCeEEEEEeC-CCC---CCChhhhcCCcee--EEEEeCCCCHHHHHHHHHHhhC
Q 009640 343 VTLSGLLNFTDGLWSCCSEEKIIVFTTN-HRD---SVDPALIRCGRMD--VHVSLGTCGPHAFKVLAKNYLG 408 (530)
Q Consensus 343 ~~ls~LLn~lDgl~s~~~~~~ivI~TTN-~~~---~LDpALlRpGR~d--~~I~~~~p~~~~r~~i~~~~l~ 408 (530)
.....|+..++.... .....+|+||| .+. .+++++.+ |+. ..|+++.|+.+++..++..++.
T Consensus 121 ~~~~~l~~~l~~~~~--~~~~~ii~~~~~~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~ 188 (242)
T 3bos_A 121 LWEEAIFDLYNRVAE--QKRGSLIVSASASPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAA 188 (242)
T ss_dssp HHHHHHHHHHHHHHH--HCSCEEEEEESSCTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--cCCCeEEEEcCCCHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHH
Confidence 012334444443322 12232555555 443 46789998 776 8999999999999999988764
No 55
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.62 E-value=1.3e-14 Score=149.84 Aligned_cols=185 Identities=17% Similarity=0.228 Sum_probs=127.1
Q ss_pred cCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCC----------
Q 009640 185 VPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCY---------- 254 (530)
Q Consensus 185 ~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~---------- 254 (530)
...+.|.+|++++|.++..+.+...+.. | ..+..|||+||||||||++++++|+.++.
T Consensus 7 ~~k~rp~~~~~~vg~~~~~~~L~~~l~~-----------~-~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~ 74 (373)
T 1jr3_A 7 ARKWRPQTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 74 (373)
T ss_dssp HHHTCCCSTTTSCSCHHHHHHHHHHHHH-----------T-CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCS
T ss_pred HHhhCCCchhhccCcHHHHHHHHHHHHh-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCc
Confidence 3456888999999999988877776532 1 12357999999999999999999998854
Q ss_pred --------------cEEEEecCccCChHHHHHHHHhc------CCCeEEEEcCccchhhhhhhhhhcccCCccccccccc
Q 009640 255 --------------DVYDLELTKVTDNSELRALLLQT------TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRS 314 (530)
Q Consensus 255 --------------~i~~l~l~~~~~~~~L~~l~~~~------~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~ 314 (530)
+++.++.........++.++... ..+.||+|||+|.+-
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~---------------------- 132 (373)
T 1jr3_A 75 VCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS---------------------- 132 (373)
T ss_dssp SSHHHHHHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSC----------------------
T ss_pred ccHHHHHHhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhc----------------------
Confidence 34555544322233456665543 247899999999871
Q ss_pred hhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCC
Q 009640 315 SSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTC 394 (530)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p 394 (530)
....+.|+..++.. ...+++|++||.+..+++++.+ |+ ..+.|+.|
T Consensus 133 ---------------------------~~~~~~Ll~~le~~----~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l 178 (373)
T 1jr3_A 133 ---------------------------RHSFNALLKTLEEP----PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKAL 178 (373)
T ss_dssp ---------------------------HHHHHHHHHHHHSC----CSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCC
T ss_pred ---------------------------HHHHHHHHHHHhcC----CCceEEEEEeCChHhCcHHHHh--he-eEeeCCCC
Confidence 12345677777643 3568899999999999999998 66 67999999
Q ss_pred CHHHHHHHHHHhhCCcCccchHHHHHHHHHhCCCCCHHHHHHHH
Q 009640 395 GPHAFKVLAKNYLGIESHHALFDVVESCIRAGGALTPAQIGEVL 438 (530)
Q Consensus 395 ~~~~r~~i~~~~l~~~~~~~~~~~i~~l~~~~~~~spadi~~~l 438 (530)
+.++...++..++.........+.++.++..+. -.+.++.+++
T Consensus 179 ~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~-G~~r~~~~~l 221 (373)
T 1jr3_A 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAE-GSLRDALSLT 221 (373)
T ss_dssp CHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSS-SCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCC-CCHHHHHHHH
Confidence 999999999887743222212223444444332 2454544444
No 56
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.62 E-value=1.1e-14 Score=151.04 Aligned_cols=151 Identities=17% Similarity=0.272 Sum_probs=112.2
Q ss_pred ccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc-----------CCcEEEEecC
Q 009640 194 ETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL-----------CYDVYDLELT 262 (530)
Q Consensus 194 ~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l-----------~~~i~~l~l~ 262 (530)
++++|.++..+.+...+..++.... +++++|+||||||||++++++++.+ +..++.+++.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~---------~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEV---------KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCC---------CCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCC---------CCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 7899999999999888877665422 4689999999999999999999998 8889988865
Q ss_pred ccC-Ch-----------------------HH-HHHHHHhc-CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchh
Q 009640 263 KVT-DN-----------------------SE-LRALLLQT-TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSS 316 (530)
Q Consensus 263 ~~~-~~-----------------------~~-L~~l~~~~-~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~ 316 (530)
... +. .. +..++... ..+.||||||+|.+..
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~----------------------- 147 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVK----------------------- 147 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHH-----------------------
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhcc-----------------------
Confidence 433 21 12 22222222 2334999999999731
Q ss_pred hhhhccccccccCCCCCCCCCCcchhhh-HHHHhhhccCCccCCCCCeEEEEEeCCC---CCCChhhhcCCceeEEEEeC
Q 009640 317 IKEMGSRIASSTCGNNNNNNGEESGRVT-LSGLLNFTDGLWSCCSEEKIIVFTTNHR---DSVDPALIRCGRMDVHVSLG 392 (530)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-ls~LLn~lDgl~s~~~~~~ivI~TTN~~---~~LDpALlRpGR~d~~I~~~ 392 (530)
.. .... +..|++.. .++.||+|||.+ +.+++++.+ ||+..|+|+
T Consensus 148 ---------------------~~-~~~~~l~~l~~~~--------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~ 195 (384)
T 2qby_B 148 ---------------------RR-GGDIVLYQLLRSD--------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFK 195 (384)
T ss_dssp ---------------------ST-TSHHHHHHHHTSS--------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEEC
T ss_pred ---------------------CC-CCceeHHHHhcCC--------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEEC
Confidence 00 0123 45555543 457899999987 789999999 887799999
Q ss_pred CCCHHHHHHHHHHhhC
Q 009640 393 TCGPHAFKVLAKNYLG 408 (530)
Q Consensus 393 ~p~~~~r~~i~~~~l~ 408 (530)
+++.++...++..++.
T Consensus 196 ~l~~~~~~~il~~~~~ 211 (384)
T 2qby_B 196 PYDAEQLKFILSKYAE 211 (384)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999998764
No 57
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.61 E-value=5.6e-15 Score=150.65 Aligned_cols=189 Identities=15% Similarity=0.196 Sum_probs=118.5
Q ss_pred CCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecCc
Q 009640 187 FRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELTK 263 (530)
Q Consensus 187 ~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~~ 263 (530)
+.+..+|++++..+..... ...+..+...+. ....++|||||||||||+|++++|+++ +.+++.++...
T Consensus 4 l~~~~~f~~fv~g~~~~~a-~~~~~~~~~~~~-------~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~ 75 (324)
T 1l8q_A 4 LNPKYTLENFIVGEGNRLA-YEVVKEALENLG-------SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADD 75 (324)
T ss_dssp CCTTCCSSSCCCCTTTHHH-HHHHHHHHHTTT-------TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCCCCcccCCCCCcHHHH-HHHHHHHHhCcC-------CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHH
Confidence 3456789999732222222 233444444331 124689999999999999999999999 89999998765
Q ss_pred cCChHHHH---------HHHHhcCCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCC
Q 009640 264 VTDNSELR---------ALLLQTTNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNN 334 (530)
Q Consensus 264 ~~~~~~L~---------~l~~~~~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 334 (530)
+.. .+. .+......+.||||||||.+.+
T Consensus 76 ~~~--~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~~----------------------------------------- 112 (324)
T 1l8q_A 76 FAQ--AMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSG----------------------------------------- 112 (324)
T ss_dssp HHH--HHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTT-----------------------------------------
T ss_pred HHH--HHHHHHHcCcHHHHHHHhcCCCEEEEcCcccccC-----------------------------------------
Confidence 421 111 1112224589999999998721
Q ss_pred CCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCC---CCChhhhcCCcee--EEEEeCCCCHHHHHHHHHHhhCC
Q 009640 335 NNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRD---SVDPALIRCGRMD--VHVSLGTCGPHAFKVLAKNYLGI 409 (530)
Q Consensus 335 ~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~---~LDpALlRpGR~d--~~I~~~~p~~~~r~~i~~~~l~~ 409 (530)
.. .+...|+..++.+.. .+.++|+.++|.+. .++++|++ ||+ ..+++++ +.+++..|++.++..
T Consensus 113 ---~~---~~~~~l~~~l~~~~~--~~~~iii~~~~~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~ 181 (324)
T 1l8q_A 113 ---KE---RTQIEFFHIFNTLYL--LEKQIILASDRHPQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKE 181 (324)
T ss_dssp ---CH---HHHHHHHHHHHHHHH--TTCEEEEEESSCGGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHH
T ss_pred ---Ch---HHHHHHHHHHHHHHH--CCCeEEEEecCChHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHh
Confidence 00 112234444333222 23456666666665 68999999 886 7899999 999999999988753
Q ss_pred cCccchHHHHHHHHHhCCCCCHHHHHHHHH
Q 009640 410 ESHHALFDVVESCIRAGGALTPAQIGEVLL 439 (530)
Q Consensus 410 ~~~~~~~~~i~~l~~~~~~~spadi~~~l~ 439 (530)
.......+.++.++... -...++.+.+.
T Consensus 182 ~~~~l~~~~l~~l~~~~--g~~r~l~~~l~ 209 (324)
T 1l8q_A 182 FNLELRKEVIDYLLENT--KNVREIEGKIK 209 (324)
T ss_dssp TTCCCCHHHHHHHHHHC--SSHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHhC--CCHHHHHHHHH
Confidence 33332234455555543 45555555543
No 58
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.60 E-value=1.5e-14 Score=148.74 Aligned_cols=190 Identities=13% Similarity=0.210 Sum_probs=123.0
Q ss_pred CccccCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc-CC-----
Q 009640 181 GWVSVPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL-CY----- 254 (530)
Q Consensus 181 ~w~~~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l-~~----- 254 (530)
.| +..++|.+|++++|++++.+.+...+. .. |. .+. +||+|||||||||+++++|+.+ +.
T Consensus 3 ~w--~~kyrP~~~~~~vg~~~~~~~l~~~~~---~~-------~~-~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i 68 (354)
T 1sxj_E 3 LW--VDKYRPKSLNALSHNEELTNFLKSLSD---QP-------RD-LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRL 68 (354)
T ss_dssp -C--TTTTCCCSGGGCCSCHHHHHHHHTTTT---CT-------TC-CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC-
T ss_pred cc--hhccCCCCHHHhcCCHHHHHHHHHHHh---hC-------CC-CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeE
Confidence 47 677899999999999887665544320 21 11 123 9999999999999999999964 21
Q ss_pred -----------------------cEEEEecCccC--ChHHHHHHHHh----------------cCCCeEEEEcCccchhh
Q 009640 255 -----------------------DVYDLELTKVT--DNSELRALLLQ----------------TTNRSIIVIEDIDCSVD 293 (530)
Q Consensus 255 -----------------------~i~~l~l~~~~--~~~~L~~l~~~----------------~~~~sII~IDeID~~~~ 293 (530)
+++.++.+... ....++.++.. ...|.||+|||+|.+ +
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L-~ 147 (354)
T 1sxj_E 69 KIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSL-T 147 (354)
T ss_dssp -----------------CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSS-C
T ss_pred EecceeecccccccceeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCcccc-C
Confidence 12333332221 11134444432 225779999999985 1
Q ss_pred hhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCC
Q 009640 294 LTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRD 373 (530)
Q Consensus 294 ~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~ 373 (530)
....+.|++.|+.. ..+..+|++||.++
T Consensus 148 ------------------------------------------------~~~~~~L~~~le~~----~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 148 ------------------------------------------------KDAQAALRRTMEKY----SKNIRLIMVCDSMS 175 (354)
T ss_dssp ------------------------------------------------HHHHHHHHHHHHHS----TTTEEEEEEESCSC
T ss_pred ------------------------------------------------HHHHHHHHHHHHhh----cCCCEEEEEeCCHH
Confidence 11234566666543 24578999999999
Q ss_pred CCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCCcCccchHHHHHHHHHhCCCCC-HHHHHHHHHHhccCHHHHHHHH
Q 009640 374 SVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGIESHHALFDVVESCIRAGGALT-PAQIGEVLLRNRGNVDLAMKEV 452 (530)
Q Consensus 374 ~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~i~~l~~~~~~~s-padi~~~l~~~~~d~~~al~~l 452 (530)
.+.|++.+ |+ ..+.|+.|+.++...+++..+... +..++ +..+..++..+.+++..|+..+
T Consensus 176 ~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~---------------~~~~~~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 176 PIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNE---------------RIQLETKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp SSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHH---------------TCEECCSHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHc---------------CCCCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999998 77 779999999999999888765322 12344 4455555555556666666555
Q ss_pred HHH
Q 009640 453 VSA 455 (530)
Q Consensus 453 ~~~ 455 (530)
...
T Consensus 238 ~~~ 240 (354)
T 1sxj_E 238 ESM 240 (354)
T ss_dssp THH
T ss_pred HHH
Confidence 443
No 59
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.60 E-value=2.4e-14 Score=146.74 Aligned_cols=156 Identities=18% Similarity=0.221 Sum_probs=101.1
Q ss_pred CCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCC------------
Q 009640 187 FRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCY------------ 254 (530)
Q Consensus 187 ~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~------------ 254 (530)
..++.+|++++|.+.+++.+...+ + .+ ...++|||||||||||++|+++|+.++.
T Consensus 17 ~~~~~~f~~i~G~~~~~~~l~~~~---~-~~---------~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~ 83 (350)
T 1g8p_A 17 TRPVFPFSAIVGQEDMKLALLLTA---V-DP---------GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSP 83 (350)
T ss_dssp -CCCCCGGGSCSCHHHHHHHHHHH---H-CG---------GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCS
T ss_pred CCCCCCchhccChHHHHHHHHHHh---h-CC---------CCceEEEECCCCccHHHHHHHHHHhCcccccccccccccc
Confidence 346778999999988766533221 1 11 1357999999999999999999999863
Q ss_pred ---------------------cEEEEecCccCChHHH------HHHHHhc-----------CCCeEEEEcCccchhhhhh
Q 009640 255 ---------------------DVYDLELTKVTDNSEL------RALLLQT-----------TNRSIIVIEDIDCSVDLTA 296 (530)
Q Consensus 255 ---------------------~i~~l~l~~~~~~~~L------~~l~~~~-----------~~~sII~IDeID~~~~~~~ 296 (530)
+++.+... .+...+ .+.+... ..++||||||||.+-
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~---- 157 (350)
T 1g8p_A 84 NVEMIPDWATVLSTNVIRKPTPVVDLPLG--VSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLE---- 157 (350)
T ss_dssp SGGGSCTTCCCSCCCEEEECCCEEEECTT--CCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSC----
T ss_pred ccccccchhhhhccccccCCCcccccCCC--cchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCC----
Confidence 12222111 112221 2222211 137899999999872
Q ss_pred hhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccC----Ccc-----CCCCCeEEEE
Q 009640 297 DRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDG----LWS-----CCSEEKIIVF 367 (530)
Q Consensus 297 ~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg----l~s-----~~~~~~ivI~ 367 (530)
......|+..++. +.. .....++||+
T Consensus 158 ---------------------------------------------~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~ 192 (350)
T 1g8p_A 158 ---------------------------------------------DHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVG 192 (350)
T ss_dssp ---------------------------------------------HHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEE
T ss_pred ---------------------------------------------HHHHHHHHHHHhcCceEEEecceEEeeCCceEEEE
Confidence 1123344544432 110 0013578899
Q ss_pred EeCCCC-CCChhhhcCCceeEEEEeCCC-CHHHHHHHHHHhhC
Q 009640 368 TTNHRD-SVDPALIRCGRMDVHVSLGTC-GPHAFKVLAKNYLG 408 (530)
Q Consensus 368 TTN~~~-~LDpALlRpGR~d~~I~~~~p-~~~~r~~i~~~~l~ 408 (530)
|||..+ .++++|++ ||+.++++++| +.+.+..|++..+.
T Consensus 193 ~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~~~~~ 233 (350)
T 1g8p_A 193 SGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIRRRDT 233 (350)
T ss_dssp EECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHHHHHH
T ss_pred EeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHHHh
Confidence 999755 89999999 99999999999 67888888877543
No 60
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.59 E-value=5.4e-14 Score=145.72 Aligned_cols=159 Identities=13% Similarity=0.075 Sum_probs=115.0
Q ss_pred CcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc----CCcEEEEecCccCCh
Q 009640 192 TFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL----CYDVYDLELTKVTDN 267 (530)
Q Consensus 192 ~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l----~~~i~~l~l~~~~~~ 267 (530)
.++++++.++..+.+...+...+.... +..+.++|+||||||||++++++++.+ +..++.+++....+.
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~~~-------~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~ 87 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRNPG-------HHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNF 87 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHSTT-------SSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCC-------CCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCH
Confidence 447899999998888888877655422 112379999999999999999999998 567888876554321
Q ss_pred H----------------------H----HHHHHHhcCCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhc
Q 009640 268 S----------------------E----LRALLLQTTNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMG 321 (530)
Q Consensus 268 ~----------------------~----L~~l~~~~~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~ 321 (530)
. . +...+.....|.||+|||+|.+
T Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l------------------------------ 137 (389)
T 1fnn_A 88 TAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL------------------------------ 137 (389)
T ss_dssp HHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS------------------------------
T ss_pred HHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc------------------------------
Confidence 1 1 1122223356899999999986
Q ss_pred cccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCC---CCCChhhhcCCceeE-EEEeCCCCHH
Q 009640 322 SRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHR---DSVDPALIRCGRMDV-HVSLGTCGPH 397 (530)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~---~~LDpALlRpGR~d~-~I~~~~p~~~ 397 (530)
....+..|+..++.+......++.||++||.+ +.+++.+.+ |+.. .|+|++++.+
T Consensus 138 -------------------~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~ 196 (389)
T 1fnn_A 138 -------------------APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKD 196 (389)
T ss_dssp -------------------CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHH
T ss_pred -------------------chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHH
Confidence 12245666676654421001467889999988 789999988 8875 8999999999
Q ss_pred HHHHHHHHhhC
Q 009640 398 AFKVLAKNYLG 408 (530)
Q Consensus 398 ~r~~i~~~~l~ 408 (530)
+...++...+.
T Consensus 197 ~~~~~l~~~~~ 207 (389)
T 1fnn_A 197 QIFDILLDRAK 207 (389)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 61
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.58 E-value=3e-15 Score=138.34 Aligned_cols=146 Identities=18% Similarity=0.226 Sum_probs=99.4
Q ss_pred CCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc----------CCcEE
Q 009640 188 RHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL----------CYDVY 257 (530)
Q Consensus 188 ~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l----------~~~i~ 257 (530)
..+.+|++++|.++..+.+.+.+ .. ...+++||+||||||||++++++|+.+ +.+++
T Consensus 16 ~~~~~~~~~~g~~~~~~~l~~~l----~~---------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~ 82 (187)
T 2p65_A 16 ARAGKLDPVIGRDTEIRRAIQIL----SR---------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLV 82 (187)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHH----TS---------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEE
T ss_pred HhccccchhhcchHHHHHHHHHH----hC---------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEE
Confidence 34668899999888666665544 21 224689999999999999999999997 77788
Q ss_pred EEecCccC----C----hHHHHHHHHh---cCCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhcccccc
Q 009640 258 DLELTKVT----D----NSELRALLLQ---TTNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIAS 326 (530)
Q Consensus 258 ~l~l~~~~----~----~~~L~~l~~~---~~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 326 (530)
.+++..+. . ...+..++.. ...+.||||||+|.+.+...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~------------------------------ 132 (187)
T 2p65_A 83 SLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGA------------------------------ 132 (187)
T ss_dssp EECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSS------------------------------
T ss_pred EEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhccccc------------------------------
Confidence 87765431 1 1224444433 35789999999999731000
Q ss_pred ccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCC-----CCChhhhcCCceeEEEEeCCCC
Q 009640 327 STCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRD-----SVDPALIRCGRMDVHVSLGTCG 395 (530)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~-----~LDpALlRpGR~d~~I~~~~p~ 395 (530)
...........|+..++ ...+++|+|||.++ .+|++|++ ||+. |+++.|+
T Consensus 133 ----------~~~~~~~~~~~l~~~~~------~~~~~ii~~~~~~~~~~~~~~~~~l~~--R~~~-i~i~~p~ 187 (187)
T 2p65_A 133 ----------VAEGALDAGNILKPMLA------RGELRCIGATTVSEYRQFIEKDKALER--RFQQ-ILVEQPS 187 (187)
T ss_dssp ----------SCTTSCCTHHHHHHHHH------TTCSCEEEEECHHHHHHHTTTCHHHHH--HEEE-EECCSCC
T ss_pred ----------ccccchHHHHHHHHHHh------cCCeeEEEecCHHHHHHHHhccHHHHH--hcCc-ccCCCCC
Confidence 00011223344444443 24577899999875 68999999 9995 9999886
No 62
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.58 E-value=2.3e-14 Score=147.86 Aligned_cols=160 Identities=15% Similarity=0.206 Sum_probs=112.3
Q ss_pred CCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc------CCcEEEEecCc
Q 009640 190 PSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL------CYDVYDLELTK 263 (530)
Q Consensus 190 ~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l------~~~i~~l~l~~ 263 (530)
...+++++|.++..+.+.+.+...+.. ..++.++|+||||||||+|++++++.+ +..++.+++..
T Consensus 16 ~~~p~~~~gr~~e~~~l~~~l~~~~~~---------~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~ 86 (386)
T 2qby_A 16 DYIPDELPHREDQIRKIASILAPLYRE---------EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ 86 (386)
T ss_dssp SCCCSCCTTCHHHHHHHHHSSGGGGGT---------CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHHcC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence 344578899888777776655433322 224689999999999999999999998 88888887542
Q ss_pred cCC----------------------hHHH-H---HHHHhcCCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhh
Q 009640 264 VTD----------------------NSEL-R---ALLLQTTNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSI 317 (530)
Q Consensus 264 ~~~----------------------~~~L-~---~l~~~~~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~ 317 (530)
..+ ...+ . ..+.....|.||+|||+|.+.+.
T Consensus 87 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~----------------------- 143 (386)
T 2qby_A 87 IDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKK----------------------- 143 (386)
T ss_dssp HCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHS-----------------------
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhcc-----------------------
Confidence 211 2222 2 22333345899999999998420
Q ss_pred hhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCC---CCCChhhhcCCcee-EEEEeCC
Q 009640 318 KEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHR---DSVDPALIRCGRMD-VHVSLGT 393 (530)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~---~~LDpALlRpGR~d-~~I~~~~ 393 (530)
.....+..|+..++.+. ..++.+|+|||.+ +.+++++.+ |+. ..|+|++
T Consensus 144 ----------------------~~~~~l~~l~~~~~~~~---~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~ 196 (386)
T 2qby_A 144 ----------------------YNDDILYKLSRINSEVN---KSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPP 196 (386)
T ss_dssp ----------------------SCSTHHHHHHHHHHSCC---C--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECC
T ss_pred ----------------------CcCHHHHHHhhchhhcC---CCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCC
Confidence 01235667777776542 3568889999987 578889988 665 5899999
Q ss_pred CCHHHHHHHHHHhhC
Q 009640 394 CGPHAFKVLAKNYLG 408 (530)
Q Consensus 394 p~~~~r~~i~~~~l~ 408 (530)
++.++...++...+.
T Consensus 197 l~~~~~~~il~~~~~ 211 (386)
T 2qby_A 197 YNAEELEDILTKRAQ 211 (386)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988764
No 63
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.57 E-value=8.2e-14 Score=145.07 Aligned_cols=173 Identities=21% Similarity=0.255 Sum_probs=113.3
Q ss_pred cccCChhhhHHHHHHHHHHHcChhh------------------HhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcE
Q 009640 195 TLALEPQLKKQITEDLTAFANGKEF------------------YHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDV 256 (530)
Q Consensus 195 ~l~~~~~~k~~i~~~l~~~l~~~~~------------------y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i 256 (530)
.|+|++++|+.|...+.....+... +.. ....+.++||+||||||||++|+++|+.++.++
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~-~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~ 100 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEE-VELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI 100 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHH-TTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccc-cccCCCCEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 4789999999998877543332211 001 122356899999999999999999999999999
Q ss_pred EEEecCccCC--------hHHHHHHHHhc------CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhcc
Q 009640 257 YDLELTKVTD--------NSELRALLLQT------TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGS 322 (530)
Q Consensus 257 ~~l~l~~~~~--------~~~L~~l~~~~------~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~ 322 (530)
+.++...+.. ...+..++... ..++||||||||.+... +.. .
T Consensus 101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~---~~~---------------~------ 156 (376)
T 1um8_A 101 AISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRL---SEN---------------R------ 156 (376)
T ss_dssp EEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC-------------------------------
T ss_pred EEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhh---cCC---------------C------
Confidence 9998876531 22345555433 26899999999997321 000 0
Q ss_pred ccccccCCCCCCCCCCcchhhhHHHHhhhccCCcc-----------------CCCCCeEEEEEeCCC-------------
Q 009640 323 RIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWS-----------------CCSEEKIIVFTTNHR------------- 372 (530)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s-----------------~~~~~~ivI~TTN~~------------- 372 (530)
....+.......+.||..|++..- ....++++|+|||..
T Consensus 157 -----------~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~ 225 (376)
T 1um8_A 157 -----------SITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQN 225 (376)
T ss_dssp ------------------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSC
T ss_pred -----------ceecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhccc
Confidence 000111123367788888886420 012446788888721
Q ss_pred ----------------------------CCCChhhhcCCceeEEEEeCCCCHHHHHHHHHH
Q 009640 373 ----------------------------DSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKN 405 (530)
Q Consensus 373 ----------------------------~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~ 405 (530)
..+.|+|+. |++..|.|+.++.++...|+..
T Consensus 226 ~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~~--R~~~~i~~~~l~~~~l~~i~~~ 284 (376)
T 1um8_A 226 VLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELIG--RLPVLSTLDSISLEAMVDILQK 284 (376)
T ss_dssp CCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHHT--TCCEEEECCCCCHHHHHHHHHS
T ss_pred ccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHhc--CCCceeeccCCCHHHHHHHHhh
Confidence 135677777 9999999999999999988874
No 64
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.56 E-value=4.5e-14 Score=145.03 Aligned_cols=158 Identities=19% Similarity=0.309 Sum_probs=113.8
Q ss_pred CCCccccCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcC-----
Q 009640 179 DSGWVSVPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLC----- 253 (530)
Q Consensus 179 ~~~w~~~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~----- 253 (530)
+.+| +..+.|.+|+++.|++++.+.|...+. ..+ . .+||||||||||||++++++|+.+.
T Consensus 12 ~~~~--~~k~rp~~~~~~~g~~~~~~~L~~~i~----~g~-------~--~~~ll~Gp~G~GKTtla~~la~~l~~~~~~ 76 (340)
T 1sxj_C 12 NLPW--VEKYRPETLDEVYGQNEVITTVRKFVD----EGK-------L--PHLLFYGPPGTGKTSTIVALAREIYGKNYS 76 (340)
T ss_dssp CCCH--HHHTCCSSGGGCCSCHHHHHHHHHHHH----TTC-------C--CCEEEECSSSSSHHHHHHHHHHHHHTTSHH
T ss_pred CCch--HHHhCCCcHHHhcCcHHHHHHHHHHHh----cCC-------C--ceEEEECCCCCCHHHHHHHHHHHHcCCCcc
Confidence 3468 556899999999999887766655443 211 1 2399999999999999999999873
Q ss_pred CcEEEEecCccCChHHHHHHHH---hc-----CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccc
Q 009640 254 YDVYDLELTKVTDNSELRALLL---QT-----TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIA 325 (530)
Q Consensus 254 ~~i~~l~l~~~~~~~~L~~l~~---~~-----~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~ 325 (530)
..+..++.+...+...++..+. +. ..+.|++|||+|.+-
T Consensus 77 ~~~~~~~~~~~~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~--------------------------------- 123 (340)
T 1sxj_C 77 NMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMT--------------------------------- 123 (340)
T ss_dssp HHEEEECTTSCCSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSC---------------------------------
T ss_pred ceEEEEcCcccccHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCC---------------------------------
Confidence 2466777665444455554432 21 247899999999872
Q ss_pred cccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHH
Q 009640 326 SSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKN 405 (530)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~ 405 (530)
....+.|+..++.. .....+|++||.+..+.|++++ |+. .+.|..++.++....+..
T Consensus 124 ----------------~~~~~~L~~~le~~----~~~~~~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~ 180 (340)
T 1sxj_C 124 ----------------NAAQNALRRVIERY----TKNTRFCVLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIAN 180 (340)
T ss_dssp ----------------HHHHHHHHHHHHHT----TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHhcC----CCCeEEEEEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHH
Confidence 11234566666643 2456788899999999999999 775 689999999888888877
Q ss_pred hh
Q 009640 406 YL 407 (530)
Q Consensus 406 ~l 407 (530)
.+
T Consensus 181 ~~ 182 (340)
T 1sxj_C 181 VL 182 (340)
T ss_dssp HH
T ss_pred HH
Confidence 66
No 65
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.55 E-value=9e-14 Score=141.58 Aligned_cols=177 Identities=10% Similarity=0.131 Sum_probs=117.4
Q ss_pred CceEEEECCCCCChhHHHHHHHHHc----------CCcEEEEecCccCC----------------------hHHHHHHHH
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYL----------CYDVYDLELTKVTD----------------------NSELRALLL 275 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l----------~~~i~~l~l~~~~~----------------------~~~L~~l~~ 275 (530)
+.++|||||||||||++++++++++ .+.++.++...+.+ ...|.++|.
T Consensus 45 ~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~ 124 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYIT 124 (318)
T ss_dssp CCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHH
Confidence 5789999999999999999999999 35677777655322 234566666
Q ss_pred hc----CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhh
Q 009640 276 QT----TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNF 351 (530)
Q Consensus 276 ~~----~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~ 351 (530)
.. ..++||+|||||.+. .+..+..|++.
T Consensus 125 ~~~~~~~~~~ii~lDE~d~l~------------------------------------------------~q~~L~~l~~~ 156 (318)
T 3te6_A 125 NVPKAKKRKTLILIQNPENLL------------------------------------------------SEKILQYFEKW 156 (318)
T ss_dssp HSCGGGSCEEEEEEECCSSSC------------------------------------------------CTHHHHHHHHH
T ss_pred HhhhccCCceEEEEecHHHhh------------------------------------------------cchHHHHHHhc
Confidence 53 467899999999972 12345556554
Q ss_pred ccCCccCCCCCeEEEEEeCCCCC----CChhhhcCCcee-EEEEeCCCCHHHHHHHHHHhhCCcCccchH--------H-
Q 009640 352 TDGLWSCCSEEKIIVFTTNHRDS----VDPALIRCGRMD-VHVSLGTCGPHAFKVLAKNYLGIESHHALF--------D- 417 (530)
Q Consensus 352 lDgl~s~~~~~~ivI~TTN~~~~----LDpALlRpGR~d-~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~--------~- 417 (530)
.. .....++||+++|..+. |++++.+ ||+ ..|.|++++.++...|+++-+...... .+ .
T Consensus 157 ~~----~~~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~-~f~~~~~~~~~~ 229 (318)
T 3te6_A 157 IS----SKNSKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKSLLKP-FHVKVNDKKEMT 229 (318)
T ss_dssp HH----CSSCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHHHCCC-EEEEECTTCCEE
T ss_pred cc----ccCCcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHhhhcc-cccccccccccc
Confidence 32 12356889999998865 4555666 886 689999999999999998877532110 00 0
Q ss_pred ---HHHHHHH--hCC-------CCCHHHHHHHHH---HhccCHHHHHHHHHHHHHHh
Q 009640 418 ---VVESCIR--AGG-------ALTPAQIGEVLL---RNRGNVDLAMKEVVSAMQAK 459 (530)
Q Consensus 418 ---~i~~l~~--~~~-------~~spadi~~~l~---~~~~d~~~al~~l~~~l~~~ 459 (530)
.+..... ... .++++.|.-+.. ...+|++.||+-+..+.+..
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~GD~R~Al~ilr~A~~~a 286 (318)
T 3te6_A 230 IYNNIREGQNQKIPDNVIVINHKINNKITQLIAKNVANVSGSTEKAFKICEAAVEIS 286 (318)
T ss_dssp ECCCC--------CTTEEEECEECCHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccCHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHH
Confidence 0000000 001 357766655544 35689999999888777644
No 66
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.55 E-value=3.7e-14 Score=151.12 Aligned_cols=190 Identities=17% Similarity=0.240 Sum_probs=116.5
Q ss_pred CCCCCCCccccc-CChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc-----CCcEEEE
Q 009640 186 PFRHPSTFETLA-LEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL-----CYDVYDL 259 (530)
Q Consensus 186 ~~~~~~~f~~l~-~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l-----~~~i~~l 259 (530)
++.+..+|++++ |.... . ....+..+...+. . ..+++||||||||||+|+++||+++ +..++.+
T Consensus 97 ~l~~~~tfd~fv~g~~n~-~-a~~~~~~~a~~~~------~--~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v 166 (440)
T 2z4s_A 97 PLNPDYTFENFVVGPGNS-F-AYHAALEVAKHPG------R--YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYI 166 (440)
T ss_dssp CCCTTCSGGGCCCCTTTH-H-HHHHHHHHHHSTT------S--SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEE
T ss_pred CCCCCCChhhcCCCCchH-H-HHHHHHHHHhCCC------C--CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEe
Confidence 345566899987 43332 2 2333444444332 1 4689999999999999999999998 8888888
Q ss_pred ecCccCChHHHHH---------HHHhcC-CCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccC
Q 009640 260 ELTKVTDNSELRA---------LLLQTT-NRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTC 329 (530)
Q Consensus 260 ~l~~~~~~~~L~~---------l~~~~~-~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 329 (530)
+...+. .++.. +..... .+.||||||||.+.+
T Consensus 167 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~------------------------------------ 208 (440)
T 2z4s_A 167 TSEKFL--NDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIG------------------------------------ 208 (440)
T ss_dssp EHHHHH--HHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSS------------------------------------
T ss_pred eHHHHH--HHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccC------------------------------------
Confidence 876542 12221 122224 789999999998731
Q ss_pred CCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCC---CChhhhcCCcee--EEEEeCCCCHHHHHHHHH
Q 009640 330 GNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDS---VDPALIRCGRMD--VHVSLGTCGPHAFKVLAK 404 (530)
Q Consensus 330 ~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~---LDpALlRpGR~d--~~I~~~~p~~~~r~~i~~ 404 (530)
.. .+...|+..++.+.. .+..|||.|.+.+.. ++++|++ ||+ ..+.++.|+.+++..+++
T Consensus 209 --------~~---~~q~~l~~~l~~l~~--~~~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~ 273 (440)
T 2z4s_A 209 --------KT---GVQTELFHTFNELHD--SGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIAR 273 (440)
T ss_dssp --------CH---HHHHHHHHHHHHHHT--TTCEEEEEESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHH
T ss_pred --------Ch---HHHHHHHHHHHHHHH--CCCeEEEEECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHH
Confidence 00 112234444433322 233445444444554 8999999 886 789999999999999998
Q ss_pred HhhCCcCccchHHHHHHHHHhCCCCCHHHHHHHHH
Q 009640 405 NYLGIESHHALFDVVESCIRAGGALTPAQIGEVLL 439 (530)
Q Consensus 405 ~~l~~~~~~~~~~~i~~l~~~~~~~spadi~~~l~ 439 (530)
..+.........+.++.++.. ..-++.++.++|.
T Consensus 274 ~~~~~~~~~i~~e~l~~la~~-~~gn~R~l~~~L~ 307 (440)
T 2z4s_A 274 KMLEIEHGELPEEVLNFVAEN-VDDNLRRLRGAII 307 (440)
T ss_dssp HHHHHHTCCCCTTHHHHHHHH-CCSCHHHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHHHHHh-cCCCHHHHHHHHH
Confidence 877422211111224444443 2345666655554
No 67
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.52 E-value=1.8e-13 Score=146.97 Aligned_cols=148 Identities=16% Similarity=0.187 Sum_probs=106.6
Q ss_pred CCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc----------CCcE
Q 009640 187 FRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL----------CYDV 256 (530)
Q Consensus 187 ~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l----------~~~i 256 (530)
...+..|+.++|.++..+.+...+.. ..+.++||+||||||||++++++|+.+ +..+
T Consensus 173 ~~r~~~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~ 239 (468)
T 3pxg_A 173 IAKEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRV 239 (468)
T ss_dssp HTTSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCE
T ss_pred HHhcCCCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeE
Confidence 35677899999999887776665432 124689999999999999999999997 7788
Q ss_pred EEEecCc-cC--ChHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCC
Q 009640 257 YDLELTK-VT--DNSELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGN 331 (530)
Q Consensus 257 ~~l~l~~-~~--~~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 331 (530)
+.++++. .. ....++.+|..+ ..++||||| ...
T Consensus 240 ~~l~~~~~~~g~~e~~~~~~~~~~~~~~~~iLfiD---~~~--------------------------------------- 277 (468)
T 3pxg_A 240 MTLDMGTKYRGEFEDRLKKVMDEIRQAGNIILFID---AAI--------------------------------------- 277 (468)
T ss_dssp ECC----------CTTHHHHHHHHHTCCCCEEEEC---C-----------------------------------------
T ss_pred EEeeCCccccchHHHHHHHHHHHHHhcCCeEEEEe---Cch---------------------------------------
Confidence 8887752 11 123466666654 468999999 100
Q ss_pred CCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCC-----CCChhhhcCCceeEEEEeCCCCHHHHHHHHHHh
Q 009640 332 NNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRD-----SVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNY 406 (530)
Q Consensus 332 ~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~-----~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~ 406 (530)
...+.|+..|+ .+.+.+|++||.++ .+|++|.| ||.. |.|++|+.+++..|++.+
T Consensus 278 -----------~a~~~L~~~L~------~g~v~vI~at~~~e~~~~~~~~~al~~--Rf~~-i~v~~p~~e~~~~iL~~~ 337 (468)
T 3pxg_A 278 -----------DASNILKPSLA------RGELQCIGATTLDEYRKYIEKDAALER--RFQP-IQVDQPSVDESIQILQGL 337 (468)
T ss_dssp -----------------CCCTT------SSSCEEEEECCTTTTHHHHTTCSHHHH--SEEE-EECCCCCHHHHHHHHHHT
T ss_pred -----------hHHHHHHHhhc------CCCEEEEecCCHHHHHHHhhcCHHHHH--hCcc-ceeCCCCHHHHHHHHHHH
Confidence 01233455554 35688999999988 69999999 9985 999999999999999988
Q ss_pred hCC
Q 009640 407 LGI 409 (530)
Q Consensus 407 l~~ 409 (530)
+..
T Consensus 338 ~~~ 340 (468)
T 3pxg_A 338 RDR 340 (468)
T ss_dssp TTT
T ss_pred HHH
Confidence 764
No 68
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.52 E-value=2.8e-13 Score=153.66 Aligned_cols=154 Identities=14% Similarity=0.249 Sum_probs=112.6
Q ss_pred cccCChhhhHHHHHHHHHHHcChhhHhhhcCC----CCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccCCh---
Q 009640 195 TLALEPQLKKQITEDLTAFANGKEFYHRVGRA----WKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVTDN--- 267 (530)
Q Consensus 195 ~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~----~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~~~--- 267 (530)
.++|+++.++.|...+..... |.. +..++||+||||||||++|+++|+.++.+++.++++.+...
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~~--------g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~ 530 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMARA--------GLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV 530 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHHT--------TCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCC
T ss_pred hccCHHHHHHHHHHHHHHHhc--------ccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhH
Confidence 467788877777776654321 221 12369999999999999999999999999999998776321
Q ss_pred ----------------HHHHHHHHhcCCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCC
Q 009640 268 ----------------SELRALLLQTTNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGN 331 (530)
Q Consensus 268 ----------------~~L~~l~~~~~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 331 (530)
..+...+.. ..++||||||||.+-
T Consensus 531 ~~l~g~~~g~~g~~~~~~l~~~~~~-~~~~vl~lDEi~~~~--------------------------------------- 570 (758)
T 1r6b_X 531 SRLIGAPPGYVGFDQGGLLTDAVIK-HPHAVLLLDEIEKAH--------------------------------------- 570 (758)
T ss_dssp SSSCCCCSCSHHHHHTTHHHHHHHH-CSSEEEEEETGGGSC---------------------------------------
T ss_pred hhhcCCCCCCcCccccchHHHHHHh-CCCcEEEEeCccccC---------------------------------------
Confidence 123333333 457999999999861
Q ss_pred CCCCCCCcchhhhHHHHhhhccCCccCC-------CCCeEEEEEeCCCC-------------------------CCChhh
Q 009640 332 NNNNNGEESGRVTLSGLLNFTDGLWSCC-------SEEKIIVFTTNHRD-------------------------SVDPAL 379 (530)
Q Consensus 332 ~~~~~~~~~~~~~ls~LLn~lDgl~s~~-------~~~~ivI~TTN~~~-------------------------~LDpAL 379 (530)
...++.|+..||.-.-.. -.+.+||+|||... .++|+|
T Consensus 571 ----------~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l 640 (758)
T 1r6b_X 571 ----------PDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEF 640 (758)
T ss_dssp ----------HHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHH
T ss_pred ----------HHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHH
Confidence 225667777776321000 13578999999854 678999
Q ss_pred hcCCceeEEEEeCCCCHHHHHHHHHHhhC
Q 009640 380 IRCGRMDVHVSLGTCGPHAFKVLAKNYLG 408 (530)
Q Consensus 380 lRpGR~d~~I~~~~p~~~~r~~i~~~~l~ 408 (530)
+. |||..|.|++++.+++..|+..++.
T Consensus 641 ~~--R~~~~i~~~~l~~~~~~~i~~~~l~ 667 (758)
T 1r6b_X 641 RN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_dssp HT--TCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred Hh--hCCcceeeCCCCHHHHHHHHHHHHH
Confidence 98 9999999999999999999998864
No 69
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.50 E-value=8.6e-13 Score=135.41 Aligned_cols=124 Identities=17% Similarity=0.198 Sum_probs=96.7
Q ss_pred CceEEEECCCCCChhHHHHHHHHHcC------------------------CcEEEEecC---ccCChHHHHHHHHhc---
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYLC------------------------YDVYDLELT---KVTDNSELRALLLQT--- 277 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l~------------------------~~i~~l~l~---~~~~~~~L~~l~~~~--- 277 (530)
+.+||||||||||||++|+++|+.+. .+++.++.. .-.+-..++.++...
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~~i~~ir~l~~~~~~~ 103 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEH 103 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHHHHHHHHHTTSC
T ss_pred ceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCCCCHHHHHHHHHHHhhc
Confidence 45799999999999999999999874 346666653 223445677776654
Q ss_pred ---CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccC
Q 009640 278 ---TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDG 354 (530)
Q Consensus 278 ---~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg 354 (530)
..+.|++|||+|.+- ....+.||+.++.
T Consensus 104 ~~~~~~kvviIdead~l~-------------------------------------------------~~a~naLLk~lEe 134 (334)
T 1a5t_A 104 ARLGGAKVVWVTDAALLT-------------------------------------------------DAAANALLKTLEE 134 (334)
T ss_dssp CTTSSCEEEEESCGGGBC-------------------------------------------------HHHHHHHHHHHTS
T ss_pred cccCCcEEEEECchhhcC-------------------------------------------------HHHHHHHHHHhcC
Confidence 246899999999871 1235678888874
Q ss_pred CccCCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhh
Q 009640 355 LWSCCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYL 407 (530)
Q Consensus 355 l~s~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l 407 (530)
- ....++|++||.+++|.|++++ |+. .+.|+.|+.++...++....
T Consensus 135 p----~~~~~~Il~t~~~~~l~~ti~S--Rc~-~~~~~~~~~~~~~~~L~~~~ 180 (334)
T 1a5t_A 135 P----PAETWFFLATREPERLLATLRS--RCR-LHYLAPPPEQYAVTWLSREV 180 (334)
T ss_dssp C----CTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHC
T ss_pred C----CCCeEEEEEeCChHhCcHHHhh--cce-eeeCCCCCHHHHHHHHHHhc
Confidence 3 3568899999999999999998 764 69999999999999888776
No 70
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.50 E-value=2.1e-13 Score=154.75 Aligned_cols=148 Identities=16% Similarity=0.188 Sum_probs=107.3
Q ss_pred CCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc----------CCcE
Q 009640 187 FRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL----------CYDV 256 (530)
Q Consensus 187 ~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l----------~~~i 256 (530)
...+..|+.++|.++..+.+...+.. ..+.++|||||||||||++|+++|+.+ +..+
T Consensus 173 ~~~~~~ld~iiG~~~~i~~l~~~l~~-------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~ 239 (758)
T 3pxi_A 173 IAKEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRV 239 (758)
T ss_dssp HTTSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCE
T ss_pred HHhhCCCCCccCchHHHHHHHHHHhC-------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeE
Confidence 34667899999999888877665431 225689999999999999999999997 8888
Q ss_pred EEEecCcc-C--ChHHHHHHHHhc--CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCC
Q 009640 257 YDLELTKV-T--DNSELRALLLQT--TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGN 331 (530)
Q Consensus 257 ~~l~l~~~-~--~~~~L~~l~~~~--~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 331 (530)
+.+++..- . ....++.+|..+ ..++||||| ...
T Consensus 240 ~~~~~g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD---~~~--------------------------------------- 277 (758)
T 3pxi_A 240 MTLDMGTKYRGEFEDRLKKVMDEIRQAGNIILFID---AAI--------------------------------------- 277 (758)
T ss_dssp ECC----------CTTHHHHHHHHHTCCCCEEEEC---C-----------------------------------------
T ss_pred EEecccccccchHHHHHHHHHHHHHhcCCEEEEEc---Cch---------------------------------------
Confidence 88776111 1 123567777654 578999999 100
Q ss_pred CCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCC-----CCChhhhcCCceeEEEEeCCCCHHHHHHHHHHh
Q 009640 332 NNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRD-----SVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNY 406 (530)
Q Consensus 332 ~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~-----~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~ 406 (530)
...+.|+..++ .+.+.+|+|||..+ .+||+|.| ||. .|.|+.|+.+++..|++.+
T Consensus 278 -----------~~~~~L~~~l~------~~~v~~I~at~~~~~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~ 337 (758)
T 3pxi_A 278 -----------DASNILKPSLA------RGELQCIGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGL 337 (758)
T ss_dssp -----------------CCCTT------SSSCEEEEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHT
T ss_pred -----------hHHHHHHHHHh------cCCEEEEeCCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHH
Confidence 01233444444 35688999999988 79999999 995 5999999999999999987
Q ss_pred hCC
Q 009640 407 LGI 409 (530)
Q Consensus 407 l~~ 409 (530)
+..
T Consensus 338 ~~~ 340 (758)
T 3pxi_A 338 RDR 340 (758)
T ss_dssp TTT
T ss_pred HHH
Confidence 764
No 71
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.49 E-value=9.2e-14 Score=159.73 Aligned_cols=189 Identities=14% Similarity=0.157 Sum_probs=118.3
Q ss_pred CCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc----------CCcEE
Q 009640 188 RHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL----------CYDVY 257 (530)
Q Consensus 188 ~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l----------~~~i~ 257 (530)
..+.+|+.++|.++..+.+.+.+ .. ..++++||+||||||||++++++|+.+ +..++
T Consensus 164 ~r~~~ld~viGr~~~i~~l~~~l----~~---------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~ 230 (854)
T 1qvr_A 164 AAEGKLDPVIGRDEEIRRVIQIL----LR---------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIV 230 (854)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHH----HC---------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEE
T ss_pred HhcCCCcccCCcHHHHHHHHHHH----hc---------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEE
Confidence 35678999999987766666544 21 124689999999999999999999998 88999
Q ss_pred EEecCccCC--------hHHHHHHHHhc---CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhcccccc
Q 009640 258 DLELTKVTD--------NSELRALLLQT---TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIAS 326 (530)
Q Consensus 258 ~l~l~~~~~--------~~~L~~l~~~~---~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 326 (530)
.++++.+.. ...+..++..+ ..|+||||||||.+.+....
T Consensus 231 ~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~----------------------------- 281 (854)
T 1qvr_A 231 SLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKA----------------------------- 281 (854)
T ss_dssp EECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC--------------------------------------
T ss_pred EeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCc-----------------------------
Confidence 998776632 23466666654 46899999999998421100
Q ss_pred ccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCC----CCChhhhcCCceeEEEEeCCCCHHHHHHH
Q 009640 327 STCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRD----SVDPALIRCGRMDVHVSLGTCGPHAFKVL 402 (530)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~----~LDpALlRpGR~d~~I~~~~p~~~~r~~i 402 (530)
.......+.|...++ ..++.+|++||.++ .+|++|.| ||+. |.|+.|+.+++..|
T Consensus 282 ------------~g~~~~~~~L~~~l~------~~~i~~I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~i 340 (854)
T 1qvr_A 282 ------------EGAVDAGNMLKPALA------RGELRLIGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISI 340 (854)
T ss_dssp ----------------------HHHHH------TTCCCEEEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHH
T ss_pred ------------cchHHHHHHHHHHHh------CCCeEEEEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHH
Confidence 001111222333332 24567888888775 48999999 9996 99999999999999
Q ss_pred HHHhhCCc----CccchHHHHHHHHH-----hCCCCCHHHHHHHHH
Q 009640 403 AKNYLGIE----SHHALFDVVESCIR-----AGGALTPAQIGEVLL 439 (530)
Q Consensus 403 ~~~~l~~~----~~~~~~~~i~~l~~-----~~~~~spadi~~~l~ 439 (530)
++.++... ......+.+..++. .+..+.|.....++.
T Consensus 341 L~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~lld 386 (854)
T 1qvr_A 341 LRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLID 386 (854)
T ss_dssp HHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHH
T ss_pred HHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHHHHHH
Confidence 98765421 11111222332222 245677777666654
No 72
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.49 E-value=4.2e-13 Score=152.27 Aligned_cols=158 Identities=17% Similarity=0.205 Sum_probs=111.2
Q ss_pred CCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc----------CCcEE
Q 009640 188 RHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL----------CYDVY 257 (530)
Q Consensus 188 ~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l----------~~~i~ 257 (530)
..+..|+.++|.++..+.+++.+ .. ..+.++||+||||||||++++++|+.+ +..++
T Consensus 180 ~~~~~~d~~iGr~~~i~~l~~~l----~~---------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~ 246 (758)
T 1r6b_X 180 ARVGGIDPLIGREKELERAIQVL----CR---------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIY 246 (758)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHH----TS---------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEE
T ss_pred HhcCCCCCccCCHHHHHHHHHHH----hc---------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEE
Confidence 45678999999988777666543 22 235789999999999999999999987 66777
Q ss_pred EEecCccC--------ChHHHHHHHHhcC--CCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccc
Q 009640 258 DLELTKVT--------DNSELRALLLQTT--NRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASS 327 (530)
Q Consensus 258 ~l~l~~~~--------~~~~L~~l~~~~~--~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 327 (530)
.+++..+. ....++.++.... .++||||||||.+++..
T Consensus 247 ~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~-------------------------------- 294 (758)
T 1r6b_X 247 SLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAG-------------------------------- 294 (758)
T ss_dssp ECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSC--------------------------------
T ss_pred EEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcC--------------------------------
Confidence 77665442 1345777777653 48999999999985200
Q ss_pred cCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCC-----CCChhhhcCCceeEEEEeCCCCHHHHHHH
Q 009640 328 TCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRD-----SVDPALIRCGRMDVHVSLGTCGPHAFKVL 402 (530)
Q Consensus 328 ~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~-----~LDpALlRpGR~d~~I~~~~p~~~~r~~i 402 (530)
..........+.|...++ ..++.+|++||.++ .+||+|.| ||+ .|.|+.|+.+++..|
T Consensus 295 --------~~~~~~~~~~~~L~~~l~------~~~~~~I~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~i 357 (758)
T 1r6b_X 295 --------AASGGQVDAANLIKPLLS------SGKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQI 357 (758)
T ss_dssp --------CSSSCHHHHHHHHSSCSS------SCCCEEEEEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHH
T ss_pred --------CCCcchHHHHHHHHHHHh------CCCeEEEEEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHH
Confidence 000111222233333333 35678888888653 57999999 998 699999999999999
Q ss_pred HHHhh
Q 009640 403 AKNYL 407 (530)
Q Consensus 403 ~~~~l 407 (530)
++.++
T Consensus 358 l~~l~ 362 (758)
T 1r6b_X 358 INGLK 362 (758)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98665
No 73
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.49 E-value=6.6e-13 Score=131.24 Aligned_cols=154 Identities=14% Similarity=0.157 Sum_probs=97.0
Q ss_pred CCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcC---CcEEEEecCccCCh
Q 009640 191 STFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLC---YDVYDLELTKVTDN 267 (530)
Q Consensus 191 ~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~---~~i~~l~l~~~~~~ 267 (530)
.+|++++|.....+.+.+.+...... ..++||+||||||||++|+++++.+. .+++.++++.+...
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~~-----------~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~ 71 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAPL-----------DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN 71 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTTS-----------CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHH
T ss_pred cccccceeCCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChh
Confidence 47899999988888888877665432 36899999999999999999999985 67999998876422
Q ss_pred HHHH-HHHH-----------------hcCCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccC
Q 009640 268 SELR-ALLL-----------------QTTNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTC 329 (530)
Q Consensus 268 ~~L~-~l~~-----------------~~~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 329 (530)
.+. .+|. ....+++|||||||.+-.
T Consensus 72 -~~~~~l~g~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~------------------------------------ 114 (265)
T 2bjv_A 72 -LLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPM------------------------------------ 114 (265)
T ss_dssp -HHHHHHHCCC---------CCCCHHHHTTTSEEEEESGGGSCH------------------------------------
T ss_pred -HHHHHhcCCcccccccccccccchhhhcCCcEEEEechHhcCH------------------------------------
Confidence 222 2221 112468999999998721
Q ss_pred CCCCCCCCCcchhhhHHHHhhhccCCc-------cCCCCCeEEEEEeCCC-------CCCChhhhcCCcee-EEEEeCCC
Q 009640 330 GNNNNNNGEESGRVTLSGLLNFTDGLW-------SCCSEEKIIVFTTNHR-------DSVDPALIRCGRMD-VHVSLGTC 394 (530)
Q Consensus 330 ~~~~~~~~~~~~~~~ls~LLn~lDgl~-------s~~~~~~ivI~TTN~~-------~~LDpALlRpGR~d-~~I~~~~p 394 (530)
.....|+..++.-. ......+.||+|||.+ ..++++|.+ ||+ ..|.+|..
T Consensus 115 -------------~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~~~i~lp~L 179 (265)
T 2bjv_A 115 -------------MVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAFDVVQLPPL 179 (265)
T ss_dssp -------------HHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCSEEEECCCG
T ss_pred -------------HHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcCcEEeCCCh
Confidence 12334444444210 0001346788999984 357899998 886 45666655
Q ss_pred CH--HHHHHHHHHhh
Q 009640 395 GP--HAFKVLAKNYL 407 (530)
Q Consensus 395 ~~--~~r~~i~~~~l 407 (530)
+. +....+++.++
T Consensus 180 ~~R~~di~~l~~~~l 194 (265)
T 2bjv_A 180 RERESDIMLMAEYFA 194 (265)
T ss_dssp GGCHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHH
Confidence 43 45555655554
No 74
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.48 E-value=2.3e-13 Score=154.45 Aligned_cols=158 Identities=14% Similarity=0.227 Sum_probs=112.7
Q ss_pred ccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCC-ceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecCccCCh--
Q 009640 194 ETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWK-RGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELTKVTDN-- 267 (530)
Q Consensus 194 ~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~-rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~~~~~~-- 267 (530)
+.++|+++.++.|...+......-.. ...+ .++||+||||||||++|+++|+.+ +.+++.++++.+...
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~-----~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~ 565 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKD-----PKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHS 565 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSC-----TTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCC
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCC-----CCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccc
Confidence 45788898888888877665421100 0112 269999999999999999999998 788999998877532
Q ss_pred ---HHHHHHHHhcCCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhh
Q 009640 268 ---SELRALLLQTTNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVT 344 (530)
Q Consensus 268 ---~~L~~l~~~~~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (530)
..+...+.. ..++||||||||.+- ...
T Consensus 566 ~~~~~l~~~~~~-~~~~vl~lDEi~~~~-------------------------------------------------~~~ 595 (758)
T 3pxi_A 566 TSGGQLTEKVRR-KPYSVVLLDAIEKAH-------------------------------------------------PDV 595 (758)
T ss_dssp CC---CHHHHHH-CSSSEEEEECGGGSC-------------------------------------------------HHH
T ss_pred cccchhhHHHHh-CCCeEEEEeCccccC-------------------------------------------------HHH
Confidence 233333332 467899999999861 235
Q ss_pred HHHHhhhccCCccC-------CCCCeEEEEEeCCCCC------------CChhhhcCCceeEEEEeCCCCHHHHHHHHHH
Q 009640 345 LSGLLNFTDGLWSC-------CSEEKIIVFTTNHRDS------------VDPALIRCGRMDVHVSLGTCGPHAFKVLAKN 405 (530)
Q Consensus 345 ls~LLn~lDgl~s~-------~~~~~ivI~TTN~~~~------------LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~ 405 (530)
.+.||+.||.-.-. ...+.+||+|||.+.. ++|+|+. |||..|.|++|+.+++..|++.
T Consensus 596 ~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~ 673 (758)
T 3pxi_A 596 FNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSL 673 (758)
T ss_dssp HHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHH
T ss_pred HHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHH
Confidence 56677777642110 1235689999997654 7889988 9999999999999999999998
Q ss_pred hhC
Q 009640 406 YLG 408 (530)
Q Consensus 406 ~l~ 408 (530)
++.
T Consensus 674 ~l~ 676 (758)
T 3pxi_A 674 MSD 676 (758)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 75
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.41 E-value=2.2e-12 Score=139.21 Aligned_cols=146 Identities=16% Similarity=0.126 Sum_probs=93.8
Q ss_pred cccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCC--cEEEEecCccCChHHH--
Q 009640 195 TLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCY--DVYDLELTKVTDNSEL-- 270 (530)
Q Consensus 195 ~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~--~i~~l~l~~~~~~~~L-- 270 (530)
.++|.+++++.+...+.. ..++||+||||||||+||+++|+.++. .+..+.... .+.+++
T Consensus 23 ~ivGq~~~i~~l~~al~~---------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~-~t~~dL~G 86 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALS---------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRF-STPEEVFG 86 (500)
T ss_dssp TCSSCHHHHHHHHHHHHH---------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTT-CCHHHHHC
T ss_pred hhHHHHHHHHHHHHHHhc---------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhc-CCHHHhcC
Confidence 367777777665544321 358999999999999999999999854 333333321 111211
Q ss_pred ---------HHHHHhc-----CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCC
Q 009640 271 ---------RALLLQT-----TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNN 336 (530)
Q Consensus 271 ---------~~l~~~~-----~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 336 (530)
...+... ..++|||||||+.+-
T Consensus 87 ~~~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~~-------------------------------------------- 122 (500)
T 3nbx_X 87 PLSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKAG-------------------------------------------- 122 (500)
T ss_dssp CBC----------CBCCTTSGGGCSEEEEESGGGCC--------------------------------------------
T ss_pred cccHHHHhhchhHHhhhccCCCcceeeeHHhHhhhc--------------------------------------------
Confidence 1122222 146799999998751
Q ss_pred CCcchhhhHHHHhhhcc-------CCccCCCCCeEEEEEeCCCCC---CChhhhcCCceeEEEEeCCCCH-HHHHHHHHH
Q 009640 337 GEESGRVTLSGLLNFTD-------GLWSCCSEEKIIVFTTNHRDS---VDPALIRCGRMDVHVSLGTCGP-HAFKVLAKN 405 (530)
Q Consensus 337 ~~~~~~~~ls~LLn~lD-------gl~s~~~~~~ivI~TTN~~~~---LDpALlRpGR~d~~I~~~~p~~-~~r~~i~~~ 405 (530)
..+.+.|+..|+ |.... ...+++|+|||.... +.+|+++ ||..+|++++|+. +++..|++.
T Consensus 123 -----~~~q~~LL~~lee~~v~i~G~~~~-~~~~~iI~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~ 194 (500)
T 3nbx_X 123 -----PAILNTLLTAINERQFRNGAHVEK-IPMRLLVAASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTS 194 (500)
T ss_dssp -----HHHHHHHHHHHHSSEEECSSSEEE-CCCCEEEEEESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTC
T ss_pred -----HHHHHHHHHHHHHHhccCCCCcCC-cchhhhhhccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhc
Confidence 224556666664 22211 233467888886322 4469999 9999999999987 778888877
Q ss_pred hhC
Q 009640 406 YLG 408 (530)
Q Consensus 406 ~l~ 408 (530)
...
T Consensus 195 ~~~ 197 (500)
T 3nbx_X 195 QQD 197 (500)
T ss_dssp CCC
T ss_pred ccc
Confidence 653
No 76
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.41 E-value=4.8e-13 Score=120.57 Aligned_cols=84 Identities=13% Similarity=0.201 Sum_probs=64.7
Q ss_pred cccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecCccCChHHHH
Q 009640 195 TLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELTKVTDNSELR 271 (530)
Q Consensus 195 ~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~~~~~~~~L~ 271 (530)
+++|.....+.+.+.+...... ...+||+||||||||++|+++++.. +.+++ +++..+.....+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~-----------~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~~~~~ 69 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSET-----------DIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNAPQLN 69 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTC-----------CSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTSSCHH
T ss_pred CceeCCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcchhhh
Confidence 4667777777777777665432 3579999999999999999999987 77888 9888876655566
Q ss_pred HHHHhcCCCeEEEEcCccch
Q 009640 272 ALLLQTTNRSIIVIEDIDCS 291 (530)
Q Consensus 272 ~l~~~~~~~sII~IDeID~~ 291 (530)
.++..+ ..++|||||||.+
T Consensus 70 ~~~~~a-~~g~l~ldei~~l 88 (145)
T 3n70_A 70 DFIALA-QGGTLVLSHPEHL 88 (145)
T ss_dssp HHHHHH-TTSCEEEECGGGS
T ss_pred cHHHHc-CCcEEEEcChHHC
Confidence 666655 4578999999987
No 77
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.39 E-value=2.2e-12 Score=148.20 Aligned_cols=159 Identities=16% Similarity=0.270 Sum_probs=112.1
Q ss_pred ccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecCccCChH--
Q 009640 194 ETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELTKVTDNS-- 268 (530)
Q Consensus 194 ~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~~~~~~~-- 268 (530)
+.|+|++...+.+...+......-. .-+ .+...+||+||||||||++|++||+.+ +.+++.++++.+....
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~---~~~-~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~ 633 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLK---DPN-RPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 633 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCS---CSS-SCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGG
T ss_pred cccCCcHHHHHHHHHHHHHHhcccC---CCC-CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHH
Confidence 5678888888877777755432100 000 112479999999999999999999999 7889999887664321
Q ss_pred -----------------HHHHHHHhcCCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCC
Q 009640 269 -----------------ELRALLLQTTNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGN 331 (530)
Q Consensus 269 -----------------~L~~l~~~~~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 331 (530)
.+...+.. ...+||||||||.+
T Consensus 634 s~l~g~~~~~~G~~~~g~l~~~~~~-~~~~vl~lDEi~~l---------------------------------------- 672 (854)
T 1qvr_A 634 SRLIGAPPGYVGYEEGGQLTEAVRR-RPYSVILFDEIEKA---------------------------------------- 672 (854)
T ss_dssp GGC--------------CHHHHHHH-CSSEEEEESSGGGS----------------------------------------
T ss_pred HHHcCCCCCCcCccccchHHHHHHh-CCCeEEEEeccccc----------------------------------------
Confidence 12222222 45689999999986
Q ss_pred CCCCCCCcchhhhHHHHhhhccCCccCC-------CCCeEEEEEeCC--------------------------CCCCChh
Q 009640 332 NNNNNGEESGRVTLSGLLNFTDGLWSCC-------SEEKIIVFTTNH--------------------------RDSVDPA 378 (530)
Q Consensus 332 ~~~~~~~~~~~~~ls~LLn~lDgl~s~~-------~~~~ivI~TTN~--------------------------~~~LDpA 378 (530)
...+++.||..||.-.-.. -.+.+||+|||. ...+.|+
T Consensus 673 ---------~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~ 743 (854)
T 1qvr_A 673 ---------HPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPE 743 (854)
T ss_dssp ---------CHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHH
T ss_pred ---------CHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHH
Confidence 1235667788777432100 135789999997 2356788
Q ss_pred hhcCCceeEEEEeCCCCHHHHHHHHHHhhC
Q 009640 379 LIRCGRMDVHVSLGTCGPHAFKVLAKNYLG 408 (530)
Q Consensus 379 LlRpGR~d~~I~~~~p~~~~r~~i~~~~l~ 408 (530)
|+. |||..|.|.+|+.+....|+..++.
T Consensus 744 l~~--Rl~~~i~~~pl~~edi~~i~~~~l~ 771 (854)
T 1qvr_A 744 FLN--RLDEIVVFRPLTKEQIRQIVEIQLS 771 (854)
T ss_dssp HHH--TCSBCCBCCCCCHHHHHHHHHHHHH
T ss_pred HHH--hcCeEEeCCCCCHHHHHHHHHHHHH
Confidence 888 9999999999999999999998864
No 78
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.35 E-value=3.8e-12 Score=129.14 Aligned_cols=122 Identities=17% Similarity=0.247 Sum_probs=96.6
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc------CCcEEEEecCc-cCChHHHHHHHHhc------CCCeEEEEcCccchhhhh
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYL------CYDVYDLELTK-VTDNSELRALLLQT------TNRSIIVIEDIDCSVDLT 295 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l------~~~i~~l~l~~-~~~~~~L~~l~~~~------~~~sII~IDeID~~~~~~ 295 (530)
..||||||||||||+++.++|+.+ ..+++.++... -.+-..++.++..+ ....|+||||+|.+-
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~~~~kvviIdead~lt--- 95 (305)
T 2gno_A 19 ISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMT--- 95 (305)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBC---
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhccccCCceEEEeccHHHhC---
Confidence 589999999999999999999874 45888888753 34455677776654 235799999999871
Q ss_pred hhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCC
Q 009640 296 ADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSV 375 (530)
Q Consensus 296 ~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~L 375 (530)
....+.||..|+.. .+..++|++||.+++|
T Consensus 96 ----------------------------------------------~~a~naLLk~LEep----~~~t~fIl~t~~~~kl 125 (305)
T 2gno_A 96 ----------------------------------------------QQAANAFLKALEEP----PEYAVIVLNTRRWHYL 125 (305)
T ss_dssp ----------------------------------------------HHHHHHTHHHHHSC----CTTEEEEEEESCGGGS
T ss_pred ----------------------------------------------HHHHHHHHHHHhCC----CCCeEEEEEECChHhC
Confidence 12356788888743 3568889999999999
Q ss_pred ChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhC
Q 009640 376 DPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLG 408 (530)
Q Consensus 376 DpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~ 408 (530)
.|++++ | .+.|+.|+.++...++...++
T Consensus 126 ~~tI~S--R---~~~f~~l~~~~i~~~L~~~~~ 153 (305)
T 2gno_A 126 LPTIKS--R---VFRVVVNVPKEFRDLVKEKIG 153 (305)
T ss_dssp CHHHHT--T---SEEEECCCCHHHHHHHHHHHT
T ss_pred hHHHHc--e---eEeCCCCCHHHHHHHHHHHhC
Confidence 999999 7 789999999999998887764
No 79
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.34 E-value=5e-13 Score=120.20 Aligned_cols=83 Identities=12% Similarity=0.055 Sum_probs=61.4
Q ss_pred cccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccCChHHHHHHH
Q 009640 195 TLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVTDNSELRALL 274 (530)
Q Consensus 195 ~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~~~~~L~~l~ 274 (530)
+++|.+...+.+.+.+..+... ..++||+||||||||++|+++++..+ +++.++++.+... .+..++
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~-----------~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~-~~~~~~ 71 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKR-----------TSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLID-MPMELL 71 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTC-----------SSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHH-CHHHHH
T ss_pred CceeCCHHHHHHHHHHHHHhCC-----------CCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChH-hhhhHH
Confidence 3567777778888888766543 35899999999999999999999988 8888877654321 134455
Q ss_pred HhcCCCeEEEEcCccch
Q 009640 275 LQTTNRSIIVIEDIDCS 291 (530)
Q Consensus 275 ~~~~~~sII~IDeID~~ 291 (530)
..+ .+++|||||||.+
T Consensus 72 ~~a-~~~~l~lDei~~l 87 (143)
T 3co5_A 72 QKA-EGGVLYVGDIAQY 87 (143)
T ss_dssp HHT-TTSEEEEEECTTC
T ss_pred HhC-CCCeEEEeChHHC
Confidence 544 4689999999987
No 80
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.33 E-value=1.7e-11 Score=124.24 Aligned_cols=151 Identities=13% Similarity=0.180 Sum_probs=96.5
Q ss_pred cccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecCccCChHHHH
Q 009640 195 TLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELTKVTDNSELR 271 (530)
Q Consensus 195 ~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~~~~~~~~L~ 271 (530)
+++|.....+.+.+.+...... ..++||+||||||||++|++|++.. +.+++.++++.+..+.--.
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~-----------~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPS-----------DATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCST-----------TSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CcEECCHHHHHHHHHHHHHhCC-----------CCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 4677777777777777665432 3689999999999999999999976 5788899888764321111
Q ss_pred HHHHh-----------------cCCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCC
Q 009640 272 ALLLQ-----------------TTNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNN 334 (530)
Q Consensus 272 ~l~~~-----------------~~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 334 (530)
.+|.. ...+++|||||||.+-
T Consensus 72 ~lfg~~~g~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~------------------------------------------ 109 (304)
T 1ojl_A 72 ELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDIS------------------------------------------ 109 (304)
T ss_dssp HHTCCCSSCCC---CCCCCHHHHHTTSEEEEESCTTCC------------------------------------------
T ss_pred HhcCccccccCchhhhhcCHHHhcCCCEEEEeccccCC------------------------------------------
Confidence 22211 1235799999999872
Q ss_pred CCCCcchhhhHHHHhhhccCCc-------cCCCCCeEEEEEeCCC-------CCCChhhhcCCcee-EEEEeCCCC--HH
Q 009640 335 NNGEESGRVTLSGLLNFTDGLW-------SCCSEEKIIVFTTNHR-------DSVDPALIRCGRMD-VHVSLGTCG--PH 397 (530)
Q Consensus 335 ~~~~~~~~~~ls~LLn~lDgl~-------s~~~~~~ivI~TTN~~-------~~LDpALlRpGR~d-~~I~~~~p~--~~ 397 (530)
......|+..++... ......+.||+|||.+ ..+++.|.. ||. ..|++|+.. .+
T Consensus 110 -------~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~~~~i~lPpL~eR~e 180 (304)
T 1ojl_A 110 -------PLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYY--RLNVVAIEMPSLRQRRE 180 (304)
T ss_dssp -------HHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHH--HHSSEEEECCCSGGGGG
T ss_pred -------HHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHHh--hcCeeEEeccCHHHhHh
Confidence 112334555554321 0012346788999975 246777777 774 446666554 34
Q ss_pred HHHHHHHHhh
Q 009640 398 AFKVLAKNYL 407 (530)
Q Consensus 398 ~r~~i~~~~l 407 (530)
....|+..++
T Consensus 181 di~~l~~~~l 190 (304)
T 1ojl_A 181 DIPLLADHFL 190 (304)
T ss_dssp GHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 5555666654
No 81
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.32 E-value=2.9e-13 Score=149.41 Aligned_cols=127 Identities=18% Similarity=0.268 Sum_probs=86.4
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCcEEEEec----CccCC---hHHHH-------HHHHhcCCCeEEEEcCccchhhhh
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCYDVYDLEL----TKVTD---NSELR-------ALLLQTTNRSIIVIEDIDCSVDLT 295 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l----~~~~~---~~~L~-------~l~~~~~~~sII~IDeID~~~~~~ 295 (530)
++||+||||||||+||+++|+.++..++.... ..+.. ..... ..+.. ...+|+||||||.+-
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~-A~~gil~IDEid~l~--- 404 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALVL-ADGGIAVIDEIDKMR--- 404 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSEEECHHHH-HSSSEECCTTTTCCC---
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeeccccccccccCCeeEe-cCCCcEEeehhhhCC---
Confidence 79999999999999999999999877665321 11100 00000 01111 246899999999871
Q ss_pred hhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccC---------CccCCCCCeEEE
Q 009640 296 ADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDG---------LWSCCSEEKIIV 366 (530)
Q Consensus 296 ~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDg---------l~s~~~~~~ivI 366 (530)
....+.|+..|+. ..........||
T Consensus 405 ----------------------------------------------~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vI 438 (595)
T 3f9v_A 405 ----------------------------------------------DEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVI 438 (595)
T ss_dssp ----------------------------------------------SHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEE
T ss_pred ----------------------------------------------HhHhhhhHHHHhCCEEEEecCCcEEEecCceEEE
Confidence 1133456665542 221123457899
Q ss_pred EEeCCCC-------------CCChhhhcCCcee-EEEEeCCCCHHHHHHHHHHhhCC
Q 009640 367 FTTNHRD-------------SVDPALIRCGRMD-VHVSLGTCGPHAFKVLAKNYLGI 409 (530)
Q Consensus 367 ~TTN~~~-------------~LDpALlRpGR~d-~~I~~~~p~~~~r~~i~~~~l~~ 409 (530)
+|||.++ .|++||++ ||| ..+..++|+.+ ...|+++.+..
T Consensus 439 aatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~ 492 (595)
T 3f9v_A 439 AAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDV 492 (595)
T ss_dssp EEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTT
T ss_pred EEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHH
Confidence 9999987 89999999 998 56667888888 88888888764
No 82
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.31 E-value=3.4e-11 Score=125.65 Aligned_cols=164 Identities=9% Similarity=0.104 Sum_probs=105.8
Q ss_pred CcccccCChhhhHHHHHHH-HHHHcChhhHhhhcCCCCceEEE--ECCCCCChhHHHHHHHHHc---------CCcEEEE
Q 009640 192 TFETLALEPQLKKQITEDL-TAFANGKEFYHRVGRAWKRGYLL--YGPPGSGKSSLIAAMANYL---------CYDVYDL 259 (530)
Q Consensus 192 ~f~~l~~~~~~k~~i~~~l-~~~l~~~~~y~~~g~~~~rG~LL--~GPPGTGKTsLa~AiA~~l---------~~~i~~l 259 (530)
..+.++|.++..+.|.+.+ ........ ..++.++| +||||||||+|++++++.+ +..++.+
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~-------~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 92 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGAG-------LSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYV 92 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSC-------BCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCCC-------CCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEE
Confidence 3477888888888887777 55544300 11457899 9999999999999999887 4566677
Q ss_pred ecCccCCh----------------------HH----HHHHHHhcCCCeEEEEcCccchhhhhhhhhhcccCCcccccccc
Q 009640 260 ELTKVTDN----------------------SE----LRALLLQTTNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKR 313 (530)
Q Consensus 260 ~l~~~~~~----------------------~~----L~~l~~~~~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r 313 (530)
++....+. .. +...+.....|.||||||+|.+...
T Consensus 93 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~------------------- 153 (412)
T 1w5s_A 93 NAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSS------------------- 153 (412)
T ss_dssp EGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSC-------------------
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhc-------------------
Confidence 65332111 11 2222232356899999999987310
Q ss_pred chhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCC--CCeEEEEEeCCCC---CCC---hhhhcCCce
Q 009640 314 SSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCS--EEKIIVFTTNHRD---SVD---PALIRCGRM 385 (530)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~--~~~ivI~TTN~~~---~LD---pALlRpGR~ 385 (530)
.......+..|+..++.+.. .+ ..+.||+|||.++ .++ +.+.+ |+
T Consensus 154 ------------------------~~~~~~~l~~l~~~~~~~~~-~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~ 206 (412)
T 1w5s_A 154 ------------------------PRIAAEDLYTLLRVHEEIPS-RDGVNRIGFLLVASDVRALSYMREKIPQVES--QI 206 (412)
T ss_dssp ------------------------TTSCHHHHHHHHTHHHHSCC-TTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TC
T ss_pred ------------------------cCcchHHHHHHHHHHHhccc-CCCCceEEEEEEeccccHHHHHhhhcchhhh--hc
Confidence 00112345555555543321 02 4677888888765 344 66666 56
Q ss_pred eEEEEeCCCCHHHHHHHHHHhhC
Q 009640 386 DVHVSLGTCGPHAFKVLAKNYLG 408 (530)
Q Consensus 386 d~~I~~~~p~~~~r~~i~~~~l~ 408 (530)
...|.+++++.++...++...+.
T Consensus 207 ~~~i~l~~l~~~e~~~ll~~~~~ 229 (412)
T 1w5s_A 207 GFKLHLPAYKSRELYTILEQRAE 229 (412)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHH
T ss_pred CCeeeeCCCCHHHHHHHHHHHHH
Confidence 55699999999999999987654
No 83
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.28 E-value=1.3e-11 Score=154.08 Aligned_cols=137 Identities=25% Similarity=0.407 Sum_probs=97.3
Q ss_pred CceEEEECCCCCChhHHH-HHHHHHcCCcEEEEecCccCChHHHHHHHHhc-----------------CCCeEEEEcCcc
Q 009640 228 KRGYLLYGPPGSGKSSLI-AAMANYLCYDVYDLELTKVTDNSELRALLLQT-----------------TNRSIIVIEDID 289 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa-~AiA~~l~~~i~~l~l~~~~~~~~L~~l~~~~-----------------~~~sII~IDeID 289 (530)
.+++||+||||||||++| +++++..++.++.++.+...+...+.+.+... ..++||||||||
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiDEin 1346 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEIN 1346 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEETTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCCCceEEEEecccc
Confidence 479999999999999999 55666668899999998888777777776531 135799999999
Q ss_pred chhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCC------CCe
Q 009640 290 CSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCS------EEK 363 (530)
Q Consensus 290 ~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~------~~~ 363 (530)
..-. + . -+.......+.+++. ..|++.... .++
T Consensus 1347 mp~~---d----------------------------------~---yg~q~~lelLRq~le-~gg~yd~~~~~~~~~~~i 1385 (2695)
T 4akg_A 1347 LPKL---D----------------------------------K---YGSQNVVLFLRQLME-KQGFWKTPENKWVTIERI 1385 (2695)
T ss_dssp CSCC---C----------------------------------S---SSCCHHHHHHHHHHH-TSSEECTTTCCEEEEESE
T ss_pred cccc---c----------------------------------c---cCchhHHHHHHHHHh-cCCEEEcCCCcEEEecCE
Confidence 6310 0 0 001111223333332 224433111 247
Q ss_pred EEEEEeCCCC-----CCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhC
Q 009640 364 IIVFTTNHRD-----SVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLG 408 (530)
Q Consensus 364 ivI~TTN~~~-----~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~ 408 (530)
.+|+|||+|. .|||+|+| || ..|++++|+.+++..|+..++.
T Consensus 1386 ~lIaA~Npp~~gGR~~l~~rllR--rf-~vi~i~~P~~~~l~~I~~~il~ 1432 (2695)
T 4akg_A 1386 HIVGACNPPTDPGRIPMSERFTR--HA-AILYLGYPSGKSLSQIYEIYYK 1432 (2695)
T ss_dssp EEEEEECCTTSTTCCCCCHHHHT--TE-EEEECCCCTTTHHHHHHHHHHH
T ss_pred EEEEecCCCccCCCccCChhhhh--ee-eEEEeCCCCHHHHHHHHHHHHH
Confidence 8999999995 89999999 99 7799999999999999988774
No 84
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.27 E-value=3.9e-12 Score=118.31 Aligned_cols=96 Identities=17% Similarity=0.283 Sum_probs=65.9
Q ss_pred CCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc----CCcEEEEecCc
Q 009640 188 RHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL----CYDVYDLELTK 263 (530)
Q Consensus 188 ~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l----~~~i~~l~l~~ 263 (530)
..+.+|+++.......+.+.+.+..+..+- ..+...+++|+||||||||+|++++|+.+ |..++.++..+
T Consensus 4 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~------~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~ 77 (180)
T 3ec2_A 4 YWNANLDTYHPKNVSQNRALLTIRVFVHNF------NPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKD 77 (180)
T ss_dssp CTTCCSSSCCCCSHHHHHHHHHHHHHHHSC------CGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHH
T ss_pred hhhCccccccCCCHHHHHHHHHHHHHHHhc------cccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 356789999875555555666666666432 22335789999999999999999999987 66666665544
Q ss_pred cCChHHHH---------HHHHhcCCCeEEEEcCccch
Q 009640 264 VTDNSELR---------ALLLQTTNRSIIVIEDIDCS 291 (530)
Q Consensus 264 ~~~~~~L~---------~l~~~~~~~sII~IDeID~~ 291 (530)
+. ..+. .++.....+.+|+|||++..
T Consensus 78 ~~--~~~~~~~~~~~~~~~~~~~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 78 LI--FRLKHLMDEGKDTKFLKTVLNSPVLVLDDLGSE 112 (180)
T ss_dssp HH--HHHHHHHHHTCCSHHHHHHHTCSEEEEETCSSS
T ss_pred HH--HHHHHHhcCchHHHHHHHhcCCCEEEEeCCCCC
Confidence 31 1111 23333457899999999864
No 85
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.09 E-value=9.7e-11 Score=110.63 Aligned_cols=97 Identities=18% Similarity=0.235 Sum_probs=62.8
Q ss_pred CCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCC-CCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecCcc
Q 009640 189 HPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRA-WKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELTKV 264 (530)
Q Consensus 189 ~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~-~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~~~ 264 (530)
.+.+|+++.+.....+.+.+.+..++.... .. .+++++|+||||||||+|++++|+++ +..++.++...+
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~ 93 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAEYE------PGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPEL 93 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHHCC------SSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHHhh------hccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHH
Confidence 456899998766444555555666654221 11 12799999999999999999999988 567776665432
Q ss_pred CC-------hHHHHHHHHhcCCCeEEEEcCccch
Q 009640 265 TD-------NSELRALLLQTTNRSIIVIEDIDCS 291 (530)
Q Consensus 265 ~~-------~~~L~~l~~~~~~~sII~IDeID~~ 291 (530)
.. ...+..++.....+.+|+|||++..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~lilDei~~~ 127 (202)
T 2w58_A 94 FRELKHSLQDQTMNEKLDYIKKVPVLMLDDLGAE 127 (202)
T ss_dssp HHHHHHC---CCCHHHHHHHHHSSEEEEEEECCC
T ss_pred HHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCC
Confidence 10 0011222333334579999999864
No 86
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=99.09 E-value=4.9e-11 Score=124.27 Aligned_cols=121 Identities=20% Similarity=0.222 Sum_probs=86.7
Q ss_pred hcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccCChHHHHHHHHhcCCCeEEEEcCccchhhhhhhhhhcc
Q 009640 223 VGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVTDNSELRALLLQTTNRSIIVIEDIDCSVDLTADRMLKS 302 (530)
Q Consensus 223 ~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~~~~~L~~l~~~~~~~sII~IDeID~~~~~~~~r~~~~ 302 (530)
++++.++.++|+||||+|||||++++|+.++..++.++... ......+....+..++++||++....+.. +
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~----~~~~~~lg~~~q~~~~l~dd~~~~~~~~r-~---- 234 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPL----DRLNFELGVAIDQFLVVFEDVKGTGGESR-D---- 234 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCT----TTHHHHHGGGTTCSCEEETTCCCSTTTTT-T----
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccc----hhHHHHHHHhcchhHHHHHHHHHHHHHHh-h----
Confidence 47788889999999999999999999999987766533221 12222344556778899999998742100 0
Q ss_pred cCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCCCCChhhhcC
Q 009640 303 SNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRDSVDPALIRC 382 (530)
Q Consensus 303 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~~LDpALlRp 382 (530)
-.......+.+.+.+.+||.. .|+++|||++.+ ++++||
T Consensus 235 ---------------------------------l~~~~~~~~~~~l~~~ldG~v-------~v~~~tn~~~~l-~alf~p 273 (377)
T 1svm_A 235 ---------------------------------LPSGQGINNLDNLRDYLDGSV-------KVNLEKKHLNKR-TQIFPP 273 (377)
T ss_dssp ---------------------------------CCCCSHHHHHHTTHHHHHCSS-------CEEECCSSSCCE-EECCCC
T ss_pred ---------------------------------ccccCcchHHHHHHHHhcCCC-------eEeeccCchhhH-HHhhcC
Confidence 000011124567888888743 478899999999 799999
Q ss_pred CceeEEEEeCC
Q 009640 383 GRMDVHVSLGT 393 (530)
Q Consensus 383 GR~d~~I~~~~ 393 (530)
||++..+++.+
T Consensus 274 g~ld~~~~~l~ 284 (377)
T 1svm_A 274 GIVTMNEYSVP 284 (377)
T ss_dssp EEEEECSCCCC
T ss_pred cccChhHHhhc
Confidence 99999988866
No 87
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.99 E-value=4.7e-10 Score=106.53 Aligned_cols=62 Identities=19% Similarity=0.328 Sum_probs=42.8
Q ss_pred cCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccCChHHHHHHHHhcCCCeEEEEcCccch
Q 009640 224 GRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVTDNSELRALLLQTTNRSIIVIEDIDCS 291 (530)
Q Consensus 224 g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~~~~~L~~l~~~~~~~sII~IDeID~~ 291 (530)
++|.++++|||||||||||++|.|+|+++.-.++.. .. +... -.+.......||+|||+|..
T Consensus 54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~f--an--s~s~--f~l~~l~~~kIiiLDEad~~ 115 (212)
T 1tue_A 54 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISF--VN--STSH--FWLEPLTDTKVAMLDDATTT 115 (212)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCC--CC--SSSC--GGGGGGTTCSSEEEEEECHH
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeE--Ee--ccch--hhhcccCCCCEEEEECCCch
Confidence 467778999999999999999999999997654332 11 1110 01223344569999999953
No 88
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.98 E-value=5.6e-10 Score=134.19 Aligned_cols=149 Identities=13% Similarity=0.098 Sum_probs=91.7
Q ss_pred CCCCcccccCChhhhHHHHHHHHHHHcC----------hhhHhh------hcCC----------CCce--EEEECCCCCC
Q 009640 189 HPSTFETLALEPQLKKQITEDLTAFANG----------KEFYHR------VGRA----------WKRG--YLLYGPPGSG 240 (530)
Q Consensus 189 ~~~~f~~l~~~~~~k~~i~~~l~~~l~~----------~~~y~~------~g~~----------~~rG--~LL~GPPGTG 240 (530)
...+|+++.+.++.|+.+++.+..++.. ++.|+. .|+. .|+| +|+|||||||
T Consensus 1015 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~G 1094 (1706)
T 3cmw_A 1015 SGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG 1094 (1706)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSS
T ss_pred CCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCC
Confidence 3478999999999999999999988843 455655 2322 3345 9999999999
Q ss_pred hhHHHHHHHHHcCCc---EEEEecCc----------------cC------ChHHHHHHHHh--cCCCeEEEEcCccchhh
Q 009640 241 KSSLIAAMANYLCYD---VYDLELTK----------------VT------DNSELRALLLQ--TTNRSIIVIEDIDCSVD 293 (530)
Q Consensus 241 KTsLa~AiA~~l~~~---i~~l~l~~----------------~~------~~~~L~~l~~~--~~~~sII~IDeID~~~~ 293 (530)
||+||.++|++...+ ...++... +. ++..|+.++.. ...||+|++|+||++.+
T Consensus 1095 KT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~ 1174 (1706)
T 3cmw_A 1095 KTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 1174 (1706)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCC
T ss_pred hHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCc
Confidence 999999999977433 33343322 11 23446555543 46899999999999864
Q ss_pred hhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCC
Q 009640 294 LTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHR 372 (530)
Q Consensus 294 ~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~ 372 (530)
....+... ++ .+.....+.++++|..|||+... .+++|| +||+.
T Consensus 1175 ~~~~~g~~----------------------------~~----~~~~~~~r~~~q~l~~~~~~~~~--~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1175 KAEIEGEI----------------------------GD----SHMGLAARMMSQAMRKLAGNLKQ--SNTLLI-FINQI 1218 (1706)
T ss_dssp HHHHHSCT----------------------------TC----CCTTHHHHHHHHHHHHHHHHHHH--TTCEEE-EEECE
T ss_pred cccccccc----------------------------cc----ccccHHHHHHHHHHHHHHhhhcc--CCeEEE-Eeccc
Confidence 32211000 00 01133445789999999987652 445555 77774
No 89
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.98 E-value=3.1e-10 Score=115.21 Aligned_cols=97 Identities=22% Similarity=0.339 Sum_probs=60.8
Q ss_pred CCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcC----CcEEEEecCcc
Q 009640 189 HPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLC----YDVYDLELTKV 264 (530)
Q Consensus 189 ~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~----~~i~~l~l~~~ 264 (530)
.+.+|+++.........+...+..|+... +.....+++||||||||||+|+.|+|+++. ..+..+....+
T Consensus 119 ~~~tfd~f~~~~~~~~~~~~~~~~~i~~~------~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l 192 (308)
T 2qgz_A 119 RHIHLSDIDVNNASRMEAFSAILDFVEQY------PSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSF 192 (308)
T ss_dssp GSCCGGGSCCCSHHHHHHHHHHHHHHHHC------SCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHH
T ss_pred HhCCHhhCcCCChHHHHHHHHHHHHHHhc------cccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHH
Confidence 35689999876544445555565665421 111257999999999999999999999775 67766665432
Q ss_pred C-------ChHHHHHHHHhcCCCeEEEEcCccch
Q 009640 265 T-------DNSELRALLLQTTNRSIIVIEDIDCS 291 (530)
Q Consensus 265 ~-------~~~~L~~l~~~~~~~sII~IDeID~~ 291 (530)
. ....+..++.......|||||||+..
T Consensus 193 ~~~l~~~~~~~~~~~~~~~~~~~~lLiiDdig~~ 226 (308)
T 2qgz_A 193 AIDVKNAISNGSVKEEIDAVKNVPVLILDDIGAE 226 (308)
T ss_dssp HHHHHCCCC----CCTTHHHHTSSEEEEETCCC-
T ss_pred HHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCC
Confidence 1 11111112222335679999999764
No 90
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.97 E-value=1.9e-09 Score=119.30 Aligned_cols=56 Identities=29% Similarity=0.266 Sum_probs=44.0
Q ss_pred cCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCc
Q 009640 185 VPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYD 255 (530)
Q Consensus 185 ~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~ 255 (530)
....+|..|++++|++.+++.+...+. . ...+||+||||||||+|+++||+.+...
T Consensus 32 ~~~~rp~~l~~i~G~~~~l~~l~~~i~----~-----------g~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 32 EIEVPEKLIDQVIGQEHAVEVIKTAAN----Q-----------KRHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp GSCCCSSHHHHCCSCHHHHHHHHHHHH----T-----------TCCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred cccccccccceEECchhhHhhcccccc----C-----------CCEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 345678899999999887765555432 1 2589999999999999999999998543
No 91
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.87 E-value=2.6e-09 Score=96.70 Aligned_cols=57 Identities=12% Similarity=0.185 Sum_probs=46.1
Q ss_pred CceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecCccCChHHHHHHHHhcCCCeEEEEcCccch
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELTKVTDNSELRALLLQTTNRSIIVIEDIDCS 291 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~~~~~~~~L~~l~~~~~~~sII~IDeID~~ 291 (530)
...++|+||+|+|||+|++++++.+ |..++.++...+... .-..++.||+|||++.+
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~-------~~~~~~~lLilDE~~~~ 95 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT-------DAAFEAEYLAVDQVEKL 95 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC-------GGGGGCSEEEEESTTCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH-------HHHhCCCEEEEeCcccc
Confidence 4679999999999999999999988 777888877666443 11346899999999975
No 92
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.77 E-value=2.8e-09 Score=108.03 Aligned_cols=68 Identities=19% Similarity=0.246 Sum_probs=43.3
Q ss_pred cCCCCceEEEECCCCCChhHHHHHHHHHcCCc--EEEEecCcc----C-ChHH-HHHHHHhc-CCCeEEEEcCccchh
Q 009640 224 GRAWKRGYLLYGPPGSGKSSLIAAMANYLCYD--VYDLELTKV----T-DNSE-LRALLLQT-TNRSIIVIEDIDCSV 292 (530)
Q Consensus 224 g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~--i~~l~l~~~----~-~~~~-L~~l~~~~-~~~sII~IDeID~~~ 292 (530)
|++..+.+||+||||||||+|+.++|...+.. +++++..+. . +... +..++... ..+ +||||+|+.+.
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~-LLVIDsI~aL~ 195 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR-VIVIDSLKNVI 195 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS-EEEEECCTTTC
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC-EEEEecccccc
Confidence 44555678999999999999999999876555 455521211 1 1122 22233222 223 99999999873
No 93
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.75 E-value=1.7e-08 Score=95.87 Aligned_cols=120 Identities=13% Similarity=0.123 Sum_probs=75.5
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc--------C-CcEEEEecCccC---------------------ChHHHHHHHH-hc
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYL--------C-YDVYDLELTKVT---------------------DNSELRALLL-QT 277 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l--------~-~~i~~l~l~~~~---------------------~~~~L~~l~~-~~ 277 (530)
--+|++|+||||||+++.+++... | ..+|..++..+. ....+..++. ..
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 85 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPE 85 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGG
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhccc
Confidence 367999999999999998875443 3 666655543221 1122333321 12
Q ss_pred CCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCcc
Q 009640 278 TNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWS 357 (530)
Q Consensus 278 ~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s 357 (530)
..++||||||++.+++.... ..+ . ..+|..+.--
T Consensus 86 ~~~~vliIDEAq~l~~~~~~---------------------------------------~~e-~----~rll~~l~~~-- 119 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSA---------------------------------------GSK-I----PENVQWLNTH-- 119 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCT---------------------------------------TCC-C----CHHHHGGGGT--
T ss_pred cCceEEEEEChhhhccCccc---------------------------------------cch-h----HHHHHHHHhc--
Confidence 34899999999998521000 000 0 1233333311
Q ss_pred CCCCCeEEEEEeCCCCCCChhhhcCCceeEEEEeCCCCHH
Q 009640 358 CCSEEKIIVFTTNHRDSVDPALIRCGRMDVHVSLGTCGPH 397 (530)
Q Consensus 358 ~~~~~~ivI~TTN~~~~LDpALlRpGR~d~~I~~~~p~~~ 397 (530)
...+.-||++|+.++.||.+|.. |++.++++..|...
T Consensus 120 -r~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~~~~~ 156 (199)
T 2r2a_A 120 -RHQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIASNKMG 156 (199)
T ss_dssp -TTTTCEEEEEESCGGGBCHHHHT--TEEEEEEEEECSSC
T ss_pred -CcCCeEEEEECCCHHHHhHHHHH--HhheEEEEcCcccC
Confidence 13456788899999999999888 99999999876543
No 94
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.73 E-value=5.9e-08 Score=121.51 Aligned_cols=130 Identities=18% Similarity=0.182 Sum_probs=97.2
Q ss_pred CceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccCChHHHHHHHHhc-CCCeEEEEcCccchhhhhhhhhhcccCCc
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVTDNSELRALLLQT-TNRSIIVIEDIDCSVDLTADRMLKSSNTS 306 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~~~~~L~~l~~~~-~~~sII~IDeID~~~~~~~~r~~~~~~~~ 306 (530)
..|.+++||||||||++++++|+.+|.+++.++++.-.+...+.++|..+ ...++++||||+.+-.
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~~~lg~~~~g~~~~Gaw~~~DE~nr~~~------------- 711 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVLSRLLVGITQIGAWGCFDEFNRLDE------------- 711 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCHHHHHHHHHHHHHHTCEEEEETTTSSCH-------------
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCChhHhhHHHHHHHhcCCEeeehhhhhcCh-------------
Confidence 36899999999999999999999999999999999988889999998876 4579999999998611
Q ss_pred cccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHH-------hhhc---------cCCccCCCCCeEEEEEeC
Q 009640 307 TTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGL-------LNFT---------DGLWSCCSEEKIIVFTTN 370 (530)
Q Consensus 307 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~L-------Ln~l---------Dgl~s~~~~~~ivI~TTN 370 (530)
.+++.+ ++.+ +|-.-.......|++|.|
T Consensus 712 ------------------------------------evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~N 755 (2695)
T 4akg_A 712 ------------------------------------KVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLN 755 (2695)
T ss_dssp ------------------------------------HHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEEC
T ss_pred ------------------------------------HHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeC
Confidence 112211 1111 121111123445777888
Q ss_pred ----CCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCC
Q 009640 371 ----HRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGI 409 (530)
Q Consensus 371 ----~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~ 409 (530)
....|+++|.+ || +.|.|.+||.+...+|+-.-.|.
T Consensus 756 Pgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~~i~ei~l~s~Gf 795 (2695)
T 4akg_A 756 PGYNGRSELPENLKK--SF-REFSMKSPQSGTIAEMILQIMGF 795 (2695)
T ss_dssp CCSSSSCCCCHHHHT--TE-EEEECCCCCHHHHHHHHHHHHHC
T ss_pred CCccCcccccHHHHh--he-EEEEeeCCCHHHHHHHHHHhcCC
Confidence 45679999998 88 67999999999988876444444
No 95
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.71 E-value=8.2e-08 Score=94.90 Aligned_cols=59 Identities=17% Similarity=0.268 Sum_probs=41.6
Q ss_pred CCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccCChHHHHHHHHhcCCCeEEEEcCccch
Q 009640 226 AWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVTDNSELRALLLQTTNRSIIVIEDIDCS 291 (530)
Q Consensus 226 ~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~~~~~L~~l~~~~~~~sII~IDeID~~ 291 (530)
++++++|||||||||||+++.|||+.+..-. .++.+. . ...|.....+.|++.||....
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l~G-~vn~~~---~---~f~l~~~~~k~i~l~Ee~~~~ 160 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPFYG-CVNWTN---E---NFPFNDCVDKMVIWWEEGKMT 160 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSCEE-ECCTTC---S---SCTTGGGSSCSEEEECSCCEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhcccc-eeeccc---c---ccccccccccEEEEeccccch
Confidence 5567999999999999999999999876522 222221 1 113455567788888888764
No 96
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.68 E-value=1.3e-07 Score=119.21 Aligned_cols=134 Identities=15% Similarity=0.282 Sum_probs=93.4
Q ss_pred CceEEEECCCCCChhHHHHHH-HHHcCCcEEEEecCccCChHHHHHHHHh------c------------CCCeEEEEcCc
Q 009640 228 KRGYLLYGPPGSGKSSLIAAM-ANYLCYDVYDLELTKVTDNSELRALLLQ------T------------TNRSIIVIEDI 288 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~Ai-A~~l~~~i~~l~l~~~~~~~~L~~l~~~------~------------~~~sII~IDeI 288 (530)
.+++||+||||||||+++... ++..++.++.++++.-.+...+...+.. . .++.|+|||||
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~VlFiDDi 1383 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFCDEI 1383 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEEEETTT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCcccCCCcCCceEEEEeccc
Confidence 368999999999999887654 4444777888999888887777777652 0 12369999999
Q ss_pred cchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhcc--CCccC------CC
Q 009640 289 DCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTD--GLWSC------CS 360 (530)
Q Consensus 289 D~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lD--gl~s~------~~ 360 (530)
+.-- .+..+.+..+.-|...|| |.+.. .-
T Consensus 1384 Nmp~-------------------------------------------~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i 1420 (3245)
T 3vkg_A 1384 NLPS-------------------------------------------TDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKL 1420 (3245)
T ss_dssp TCCC-------------------------------------------CCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEE
T ss_pred CCCC-------------------------------------------ccccccccHHHHHHHHHHcCCeEECCCCeEEEe
Confidence 9530 011112334444444444 22211 01
Q ss_pred CCeEEEEEeCCC-----CCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhh
Q 009640 361 EEKIIVFTTNHR-----DSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYL 407 (530)
Q Consensus 361 ~~~ivI~TTN~~-----~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l 407 (530)
.++.+|+|.|.| ..|+|+|+| ||-. |++++|+.++...|+..++
T Consensus 1421 ~d~~~vaamnPp~~gGr~~l~~Rf~r--~F~v-i~i~~ps~esL~~If~til 1469 (3245)
T 3vkg_A 1421 DKIQFVGACNPPTDAGRVQLTHRFLR--HAPI-LLVDFPSTSSLTQIYGTFN 1469 (3245)
T ss_dssp SSEEEEEEECCTTSTTCCCCCHHHHT--TCCE-EECCCCCHHHHHHHHHHHH
T ss_pred cCeEEEEEcCCCCCCCCccCCHHHHh--hceE-EEeCCCCHHHHHHHHHHHH
Confidence 346788999988 469999999 9976 9999999999999987665
No 97
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.66 E-value=2.4e-07 Score=94.01 Aligned_cols=55 Identities=24% Similarity=0.183 Sum_probs=40.6
Q ss_pred CcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCc
Q 009640 192 TFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTK 263 (530)
Q Consensus 192 ~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~ 263 (530)
..+.++|-++..+.|.+ + .. +.++++||+|+|||+|++.+++.++..++.+++..
T Consensus 11 ~~~~~~gR~~el~~L~~-l----~~------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~ 65 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-L----RA------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRK 65 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-T----CS------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred CHHHhcChHHHHHHHHH-h----cC------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchh
Confidence 44667776665444443 3 21 47899999999999999999999887777777653
No 98
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.62 E-value=8.9e-07 Score=89.54 Aligned_cols=54 Identities=24% Similarity=0.154 Sum_probs=39.8
Q ss_pred CCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEec
Q 009640 191 STFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLEL 261 (530)
Q Consensus 191 ~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l 261 (530)
..-+.++|-++..+.|.+.+.. | +.++++||+|+|||+|++.+++.++ ++.+++
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~-----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~ 62 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLEN-----------Y----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDC 62 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHH-----------C----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEH
T ss_pred CChHhcCChHHHHHHHHHHHhc-----------C----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEe
Confidence 3446678877766666665432 1 5899999999999999999999886 444543
No 99
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.41 E-value=1.4e-06 Score=92.21 Aligned_cols=138 Identities=15% Similarity=0.159 Sum_probs=80.8
Q ss_pred ccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHH-HHHcCCcEEEEecCccCChHHHHH--
Q 009640 196 LALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAM-ANYLCYDVYDLELTKVTDNSELRA-- 272 (530)
Q Consensus 196 l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~Ai-A~~l~~~i~~l~l~~~~~~~~L~~-- 272 (530)
|.|++.+|+.|.-.+.. ..+. ....-++||.|+||| ||+|++++ ++.+....|..... .+...|..
T Consensus 215 I~G~e~vK~aLll~L~G--G~~k------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~--ss~~gLt~s~ 283 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFS--CVGK------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRR--TELTDLTAVL 283 (506)
T ss_dssp STTCHHHHHHHHHHHTT--CCSS------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGG--CCHHHHSEEE
T ss_pred cCCCHHHHHHHHHHHcC--Cccc------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCC--CCccCceEEE
Confidence 77888887766554321 1111 011226999999999 99999999 77766655542211 11111110
Q ss_pred -----------HHHhcCCCeEEEEcCccchhhhhhhhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcch
Q 009640 273 -----------LLLQTTNRSIIVIEDIDCSVDLTADRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESG 341 (530)
Q Consensus 273 -----------l~~~~~~~sII~IDeID~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (530)
.+. .....|+|||||+.+-
T Consensus 284 r~~tG~~~~~G~l~-LAdgGvl~lDEIn~~~------------------------------------------------- 313 (506)
T 3f8t_A 284 KEDRGWALRAGAAV-LADGGILAVDHLEGAP------------------------------------------------- 313 (506)
T ss_dssp EESSSEEEEECHHH-HTTTSEEEEECCTTCC-------------------------------------------------
T ss_pred EcCCCcccCCCeeE-EcCCCeeehHhhhhCC-------------------------------------------------
Confidence 011 1346899999999861
Q ss_pred hhhHHHHhhhcc-------CCccCCCCCeEEEEEeCCCC-----------CCChhhhcCCceeEEEE-eCCCCHHH
Q 009640 342 RVTLSGLLNFTD-------GLWSCCSEEKIIVFTTNHRD-----------SVDPALIRCGRMDVHVS-LGTCGPHA 398 (530)
Q Consensus 342 ~~~ls~LLn~lD-------gl~s~~~~~~ivI~TTN~~~-----------~LDpALlRpGR~d~~I~-~~~p~~~~ 398 (530)
..+.+.|+..|+ |. . -.....||+|+|..+ .|+++++. |||..+. +++|+.+.
T Consensus 314 ~~~qsaLlEaMEe~~VtI~G~-~-lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~ 385 (506)
T 3f8t_A 314 EPHRWALMEAMDKGTVTVDGI-A-LNARCAVLAAINPGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGE 385 (506)
T ss_dssp HHHHHHHHHHHHHSEEEETTE-E-EECCCEEEEEECCCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC------
T ss_pred HHHHHHHHHHHhCCcEEECCE-E-cCCCeEEEEEeCcccccCCCCCccccCCChHHhh--heeeEEEecCCCChhH
Confidence 223444555443 33 1 134568999999876 88999999 9997554 57777654
No 100
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.41 E-value=6.2e-06 Score=86.02 Aligned_cols=87 Identities=15% Similarity=0.188 Sum_probs=59.3
Q ss_pred ccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcC---CcEEEEecCccCChHHH
Q 009640 194 ETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLC---YDVYDLELTKVTDNSEL 270 (530)
Q Consensus 194 ~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~---~~i~~l~l~~~~~~~~L 270 (530)
+.+.+....-+.+.+.+...... ...+|++|++||||+++++++..... .+++.+++..+..+.--
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~a~~-----------~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~ 205 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKISCA-----------ECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFE 205 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHHTTC-----------CSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHH
T ss_pred hhhhhccHHhhHHHHHHHHhcCC-----------CCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHH
Confidence 34555555555566655553322 35789999999999999999998874 68999998876433222
Q ss_pred HHHHHh-----------------cCCCeEEEEcCccch
Q 009640 271 RALLLQ-----------------TTNRSIIVIEDIDCS 291 (530)
Q Consensus 271 ~~l~~~-----------------~~~~sII~IDeID~~ 291 (530)
..+|-. .....+||||||+.+
T Consensus 206 ~elfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l 243 (387)
T 1ny5_A 206 AELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGEL 243 (387)
T ss_dssp HHHHCBCTTSSTTCCSCBCCHHHHTTTSEEEEESGGGC
T ss_pred HHhcCCCCCCCCCcccccCCceeeCCCcEEEEcChhhC
Confidence 333321 123579999999987
No 101
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.40 E-value=6.9e-06 Score=85.10 Aligned_cols=86 Identities=15% Similarity=0.221 Sum_probs=60.2
Q ss_pred cccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCc--EEEEecCccCChHHHHH
Q 009640 195 TLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYD--VYDLELTKVTDNSELRA 272 (530)
Q Consensus 195 ~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~--i~~l~l~~~~~~~~L~~ 272 (530)
.+.+.......+.+.+...... ...+|++|++||||+.+++++....+.. ++.+++..+..+.--..
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a~~-----------~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIAKS-----------KAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHHTS-----------CSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred cccccchHHHHHHhhhhhhhcc-----------chhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 4566666656666655444332 2469999999999999999999887554 99999988754433334
Q ss_pred HHHh-----------------cCCCeEEEEcCccch
Q 009640 273 LLLQ-----------------TTNRSIIVIEDIDCS 291 (530)
Q Consensus 273 l~~~-----------------~~~~sII~IDeID~~ 291 (530)
+|-. ......||||||+.+
T Consensus 199 lfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l 234 (368)
T 3dzd_A 199 LFGHEKGAFTGALTRKKGKLELADQGTLFLDEVGEL 234 (368)
T ss_dssp HHEECSCSSSSCCCCEECHHHHTTTSEEEEETGGGS
T ss_pred hcCccccccCCcccccCChHhhcCCCeEEecChhhC
Confidence 4321 124568999999987
No 102
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.32 E-value=3.3e-06 Score=106.77 Aligned_cols=130 Identities=15% Similarity=0.116 Sum_probs=95.1
Q ss_pred CceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccCChHHHHHHHHhc-CCCeEEEEcCccchhhhhhhhhhcccCCc
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVTDNSELRALLLQT-TNRSIIVIEDIDCSVDLTADRMLKSSNTS 306 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~~~~~L~~l~~~~-~~~sII~IDeID~~~~~~~~r~~~~~~~~ 306 (530)
..|..++||+|||||.+++++|+.+|..++.++++.-.+...+.++|..+ ...+..++|||+.+-
T Consensus 604 ~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~~~~g~i~~G~~~~GaW~cfDEfNrl~-------------- 669 (3245)
T 3vkg_A 604 RMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAMSRIFVGLCQCGAWGCFDEFNRLE-------------- 669 (3245)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHHHTCEEEEETTTSSC--------------
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHhhHhhcCcEEEehhhhcCC--------------
Confidence 35778999999999999999999999999999999988888888888876 568899999999861
Q ss_pred cccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhh----------------cc-CCccCCCCCeEEEEEe
Q 009640 307 TTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNF----------------TD-GLWSCCSEEKIIVFTT 369 (530)
Q Consensus 307 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~----------------lD-gl~s~~~~~~ivI~TT 369 (530)
..++|.+... ++ |-.-.-.....|++|.
T Consensus 670 -----------------------------------~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTm 714 (3245)
T 3vkg_A 670 -----------------------------------ERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTM 714 (3245)
T ss_dssp -----------------------------------HHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECB
T ss_pred -----------------------------------HHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEe
Confidence 0111111111 11 3110112345577788
Q ss_pred CC----CCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCC
Q 009640 370 NH----RDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGI 409 (530)
Q Consensus 370 N~----~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~ 409 (530)
|. ...|+++|.. || +.|.|.+||.+...+|+-.-.|.
T Consensus 715 NpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~~~i~ei~L~s~Gf 755 (3245)
T 3vkg_A 715 NPGYAGRSNLPDNLKK--LF-RSMAMIKPDREMIAQVMLYSQGF 755 (3245)
T ss_dssp CCCGGGCCCSCHHHHT--TE-EEEECCSCCHHHHHHHHHHTTTC
T ss_pred CCCccCcccChHHHHh--hc-EEEEEeCCCHHHHHHHHHHHccc
Confidence 83 4689999998 87 55999999999888876554444
No 103
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.27 E-value=8e-07 Score=108.31 Aligned_cols=69 Identities=14% Similarity=0.189 Sum_probs=48.8
Q ss_pred CCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecCcc---------------------CChHHHHHHHH---hc
Q 009640 225 RAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELTKV---------------------TDNSELRALLL---QT 277 (530)
Q Consensus 225 ~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~~~---------------------~~~~~L~~l~~---~~ 277 (530)
++..++++||||||||||+||.++|.+. |..+..++.... .....+.+.+. +.
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~ 1503 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 1503 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhc
Confidence 7778899999999999999999998876 444555544322 11122223333 23
Q ss_pred CCCeEEEEcCccchhh
Q 009640 278 TNRSIIVIEDIDCSVD 293 (530)
Q Consensus 278 ~~~sII~IDeID~~~~ 293 (530)
.+|++||||+|+.+++
T Consensus 1504 ~~~~lVVIDsi~al~p 1519 (2050)
T 3cmu_A 1504 GAVDVIVVDSVAALTP 1519 (2050)
T ss_dssp TCCSEEEESCGGGCCC
T ss_pred CCCCEEEEcChhHhcc
Confidence 7899999999998864
No 104
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.20 E-value=1.3e-05 Score=81.74 Aligned_cols=122 Identities=16% Similarity=0.148 Sum_probs=82.0
Q ss_pred CceEEEECCCCCChhHHHHHHHHHc---CC-cEEEEecCccCChHHHHHHHHhc------CCCeEEEEcCccc-hhhhhh
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYL---CY-DVYDLELTKVTDNSELRALLLQT------TNRSIIVIEDIDC-SVDLTA 296 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l---~~-~i~~l~l~~~~~~~~L~~l~~~~------~~~sII~IDeID~-~~~~~~ 296 (530)
...||||||+|+||++.+.++++.+ +. +...+.... +.++++++..+ ..+-||+|||+|. +-
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~---- 90 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP---NTDWNAIFSLCQAMSLFASRQTLLLLLPENGPN---- 90 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT---TCCHHHHHHHHHHHHHCCSCEEEEEECCSSCCC----
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC---CCCHHHHHHHhcCcCCccCCeEEEEECCCCCCC----
Confidence 4689999999999999999998865 33 222333322 23455554432 4678999999987 41
Q ss_pred hhhhcccCCccccccccchhhhhhccccccccCCCCCCCCCCcchhhhHHHHhhhccCCccCCCCCeEEEEEeCCCC---
Q 009640 297 DRMLKSSNTSTTAKTKRSSSIKEMGSRIASSTCGNNNNNNGEESGRVTLSGLLNFTDGLWSCCSEEKIIVFTTNHRD--- 373 (530)
Q Consensus 297 ~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LLn~lDgl~s~~~~~~ivI~TTN~~~--- 373 (530)
....+.|+..++.. .+..++|++|+.++
T Consensus 91 ---------------------------------------------~~~~~aLl~~le~p----~~~~~~il~~~~~~~~~ 121 (343)
T 1jr3_D 91 ---------------------------------------------AAINEQLLTLTGLL----HDDLLLIVRGNKLSKAQ 121 (343)
T ss_dssp ---------------------------------------------TTHHHHHHHHHTTC----BTTEEEEEEESCCCTTT
T ss_pred ---------------------------------------------hHHHHHHHHHHhcC----CCCeEEEEEcCCCChhh
Confidence 11345677777643 24566676666543
Q ss_pred ---CCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhC
Q 009640 374 ---SVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLG 408 (530)
Q Consensus 374 ---~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~ 408 (530)
++-+++.. |. ..+.+..++..+....++..+.
T Consensus 122 ~~~k~~~~i~s--r~-~~~~~~~l~~~~l~~~l~~~~~ 156 (343)
T 1jr3_D 122 ENAAWFTALAN--RS-VQVTCQTPEQAQLPRWVAARAK 156 (343)
T ss_dssp TTSHHHHHHTT--TC-EEEEECCCCTTHHHHHHHHHHH
T ss_pred HhhHHHHHHHh--Cc-eEEEeeCCCHHHHHHHHHHHHH
Confidence 45667776 44 4689999999888887777663
No 105
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.10 E-value=1.1e-05 Score=75.04 Aligned_cols=27 Identities=26% Similarity=0.516 Sum_probs=23.4
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCcE
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCYDV 256 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~~i 256 (530)
-+.|.||+|+|||||++.|++.++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 368899999999999999999986544
No 106
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.84 E-value=6.1e-05 Score=80.19 Aligned_cols=70 Identities=24% Similarity=0.278 Sum_probs=40.0
Q ss_pred CCCCccccCCCCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc---CC
Q 009640 178 YDSGWVSVPFRHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL---CY 254 (530)
Q Consensus 178 ~~~~w~~~~~~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~ 254 (530)
.+.+| ++.+.|.+|+++ .+++++.+.. +..++... ...+|+.||||||||+++.+++..+ +.
T Consensus 10 ~~~~~--~~~~~p~~~~~L--n~~Q~~av~~-~~~~i~~~----------~~~~li~G~aGTGKT~ll~~~~~~l~~~~~ 74 (459)
T 3upu_A 10 HSSGL--VPRGSHMTFDDL--TEGQKNAFNI-VMKAIKEK----------KHHVTINGPAGTGATTLTKFIIEALISTGE 74 (459)
T ss_dssp -------------CCSSCC--CHHHHHHHHH-HHHHHHSS----------SCEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred ccCCC--ccccCCCccccC--CHHHHHHHHH-HHHHHhcC----------CCEEEEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence 34578 778889999886 4555554444 33444332 1378999999999999999999887 33
Q ss_pred -cEEEEecC
Q 009640 255 -DVYDLELT 262 (530)
Q Consensus 255 -~i~~l~l~ 262 (530)
.++.+..+
T Consensus 75 ~~il~~a~T 83 (459)
T 3upu_A 75 TGIILAAPT 83 (459)
T ss_dssp CCEEEEESS
T ss_pred ceEEEecCc
Confidence 45555433
No 107
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.66 E-value=0.00048 Score=75.14 Aligned_cols=47 Identities=21% Similarity=0.197 Sum_probs=32.7
Q ss_pred cccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHH
Q 009640 193 FETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMAN 250 (530)
Q Consensus 193 f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~ 250 (530)
...++|-+...+.|.+.+.. . ....+-++++||+|.|||+||..+++
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~----~-------~~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSK----L-------KGEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTT----S-------TTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCeecccHHHHHHHHHHHhc----c-------cCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 35578877766666554421 1 01135689999999999999999864
No 108
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.61 E-value=0.00023 Score=66.95 Aligned_cols=40 Identities=25% Similarity=0.164 Sum_probs=31.2
Q ss_pred cCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCc
Q 009640 224 GRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTK 263 (530)
Q Consensus 224 g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~ 263 (530)
|++...-++|+||||+|||+|+..+|...+..++.++...
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 4555566899999999999999999985566666666543
No 109
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.56 E-value=5.4e-05 Score=70.54 Aligned_cols=62 Identities=11% Similarity=0.108 Sum_probs=37.1
Q ss_pred eEEEECCCCCChhHHHHHHHHHc---CCcEEEEecCc--------cCC----------hHHHHHHHHhcC-CCeEEEEcC
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELTK--------VTD----------NSELRALLLQTT-NRSIIVIED 287 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~~--------~~~----------~~~L~~l~~~~~-~~sII~IDe 287 (530)
-++++||||+|||+++..++..+ +..++.+.... +.+ ...+..++.... ...+|+|||
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~~~~dvviIDE 84 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIEEDTRGVFIDE 84 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC----CEECEEESSGGGGGGGCCTTEEEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHHhcCCCCEEEEEC
Confidence 47899999999999997776553 55554432110 000 011222333333 467999999
Q ss_pred ccch
Q 009640 288 IDCS 291 (530)
Q Consensus 288 ID~~ 291 (530)
+..+
T Consensus 85 ~Q~~ 88 (184)
T 2orw_A 85 VQFF 88 (184)
T ss_dssp GGGS
T ss_pred cccC
Confidence 9865
No 110
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.43 E-value=9.9e-05 Score=67.85 Aligned_cols=32 Identities=28% Similarity=0.319 Sum_probs=29.3
Q ss_pred CceEEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
++.++|.||||+||||+++++|..+++.+++.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 35789999999999999999999999998875
No 111
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.43 E-value=0.00022 Score=87.32 Aligned_cols=69 Identities=20% Similarity=0.271 Sum_probs=52.1
Q ss_pred cCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecCccCCh------------------------HHHHHHHHh
Q 009640 224 GRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELTKVTDN------------------------SELRALLLQ 276 (530)
Q Consensus 224 g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~~~~~~------------------------~~L~~l~~~ 276 (530)
|++..+.+||+||||||||+|+.+++.+. |...+.+++...... ..+...+.+
T Consensus 1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~ 1156 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1156 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHH
Confidence 57778889999999999999999998765 677777776653211 123334555
Q ss_pred cCCCeEEEEcCccchh
Q 009640 277 TTNRSIIVIEDIDCSV 292 (530)
Q Consensus 277 ~~~~sII~IDeID~~~ 292 (530)
..+|.+||||++..+.
T Consensus 1157 ~~~~dlvVIDsl~~L~ 1172 (2050)
T 3cmu_A 1157 SGAVDVIVVDSVAALT 1172 (2050)
T ss_dssp HTCCSEEEESCGGGCC
T ss_pred hCCCCEEEECCccccc
Confidence 6789999999999984
No 112
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.42 E-value=0.00012 Score=66.78 Aligned_cols=33 Identities=21% Similarity=0.315 Sum_probs=29.6
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCCcEEEEec
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCYDVYDLEL 261 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l 261 (530)
.-++|.||||+||||+++++|..++..+++++.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~ 36 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGV 36 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEecc
Confidence 468999999999999999999999988887754
No 113
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.40 E-value=0.00051 Score=64.82 Aligned_cols=37 Identities=19% Similarity=0.081 Sum_probs=27.5
Q ss_pred cCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEe
Q 009640 224 GRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLE 260 (530)
Q Consensus 224 g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~ 260 (530)
|++...-++|+||||+|||+|+..+|..+ +..++.++
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 34445568999999999999999999654 44554443
No 114
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.39 E-value=0.00046 Score=71.03 Aligned_cols=69 Identities=14% Similarity=0.150 Sum_probs=45.9
Q ss_pred cCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecCccC---------------------ChHHHHHHHH---h
Q 009640 224 GRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELTKVT---------------------DNSELRALLL---Q 276 (530)
Q Consensus 224 g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~~~~---------------------~~~~L~~l~~---~ 276 (530)
|++..+-++|+||||+|||+|+..+|..+ +..+..++..... +..++..++. .
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 45555668999999999999999999875 5566556543311 1122222222 2
Q ss_pred cCCCeEEEEcCccchh
Q 009640 277 TTNRSIIVIEDIDCSV 292 (530)
Q Consensus 277 ~~~~sII~IDeID~~~ 292 (530)
...+.+|+||.+-.+.
T Consensus 137 ~~~~dlvVIDSi~~l~ 152 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALV 152 (356)
T ss_dssp TSCCSEEEEECTTTCC
T ss_pred hcCCCeEEehHhhhhc
Confidence 3578899999998774
No 115
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.38 E-value=0.0019 Score=76.02 Aligned_cols=51 Identities=24% Similarity=0.252 Sum_probs=35.7
Q ss_pred CCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHH
Q 009640 190 PSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 190 ~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~ 251 (530)
|.....++|-++..++|.+.+... . ...+-+.|+|++|.|||+||+.+++.
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~--~---------~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKL--N---------GEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTT--T---------TSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred CCCCceeccHHHHHHHHHHHHhhc--c---------CCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 344456788887777766655311 1 11356889999999999999998875
No 116
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.37 E-value=0.00073 Score=71.74 Aligned_cols=92 Identities=13% Similarity=0.172 Sum_probs=62.6
Q ss_pred hhHHHHhhhccCCccCCCCCeEEEEEeCC-------------CCCCChhhhcCCceeEEEEeCCCCHHHHHHHHHHhhCC
Q 009640 343 VTLSGLLNFTDGLWSCCSEEKIIVFTTNH-------------RDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAKNYLGI 409 (530)
Q Consensus 343 ~~ls~LLn~lDgl~s~~~~~~ivI~TTN~-------------~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~~~l~~ 409 (530)
...+.||..|+.-. .. ++|++||. ++.|+|.+++ ||.. +.|++++.++...+++..+..
T Consensus 310 ~a~~aLlk~lEe~~----~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~s--R~~~-~~~~~~~~~e~~~iL~~~~~~ 381 (456)
T 2c9o_A 310 ECFTYLHRALESSI----AP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLD--RVMI-IRTMLYTPQEMKQIIKIRAQT 381 (456)
T ss_dssp HHHHHHHHHTTSTT----CC-EEEEEECCSEEECBTTSSCEEETTCCHHHHT--TEEE-EECCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccC----CC-EEEEecCCccccccccccccccccCChhHHh--hcce-eeCCCCCHHHHHHHHHHHHHH
Confidence 35678888887432 33 56655543 7889999999 9977 699999999999998876421
Q ss_pred cCccchHHHHHHHHHhCCCCCHHHHHHHHHHh-ccCHHHHHHHHHHHHH
Q 009640 410 ESHHALFDVVESCIRAGGALTPAQIGEVLLRN-RGNVDLAMKEVVSAMQ 457 (530)
Q Consensus 410 ~~~~~~~~~i~~l~~~~~~~spadi~~~l~~~-~~d~~~al~~l~~~l~ 457 (530)
. ...+++..+..+...+ .+++..|+.-+..+..
T Consensus 382 ~---------------~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~ 415 (456)
T 2c9o_A 382 E---------------GINISEEALNHLGEIGTKTTLRYSVQLLTPANL 415 (456)
T ss_dssp H---------------TCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHH
T ss_pred h---------------CCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 1 2345665555555544 5677777776655533
No 117
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.36 E-value=0.00013 Score=67.17 Aligned_cols=33 Identities=24% Similarity=0.306 Sum_probs=28.8
Q ss_pred CCCceEEEECCCCCChhHHHHHHHHHcCCcEEE
Q 009640 226 AWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYD 258 (530)
Q Consensus 226 ~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~ 258 (530)
+.+.-++|.||||+||||+++.+|..+++.+++
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 334568899999999999999999999988776
No 118
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.35 E-value=0.00013 Score=65.78 Aligned_cols=31 Identities=26% Similarity=0.263 Sum_probs=28.2
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCcEEEEe
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCYDVYDLE 260 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~ 260 (530)
-++|.||||+||||+++.+|..+++.+++.+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 4789999999999999999999999988765
No 119
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.34 E-value=0.0012 Score=72.16 Aligned_cols=33 Identities=33% Similarity=0.352 Sum_probs=26.7
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc---CCcEEEEec
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLEL 261 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l 261 (530)
+-+++.||||||||+++.+++..+ +..+.-+..
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~Ap 240 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAP 240 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecC
Confidence 568899999999999999998865 566665543
No 120
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.32 E-value=0.00016 Score=67.75 Aligned_cols=32 Identities=34% Similarity=0.343 Sum_probs=28.9
Q ss_pred CceEEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
...++|.||||+||||+++++|..+++.+++.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 35689999999999999999999999988765
No 121
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.26 E-value=0.0061 Score=66.10 Aligned_cols=43 Identities=19% Similarity=0.205 Sum_probs=32.2
Q ss_pred CChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHH
Q 009640 198 LEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMAN 250 (530)
Q Consensus 198 ~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~ 250 (530)
|-++.+++|.+.+..-- ....+-+.++|++|.|||+||..+++
T Consensus 132 GR~~~~~~l~~~L~~~~----------~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 132 IREYHVDRVIKKLDEMC----------DLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCHHHHHHHHHHHHHHT----------TSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CchHHHHHHHHHHhccc----------CCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 77777777777663210 11236788999999999999999997
No 122
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=97.26 E-value=9.1e-05 Score=60.33 Aligned_cols=52 Identities=8% Similarity=-0.215 Sum_probs=40.9
Q ss_pred EeCCCCHHHHHHHHHHhhCCcCccchHHHHHHHHHhCCCCCHHHHHHHHHHhc
Q 009640 390 SLGTCGPHAFKVLAKNYLGIESHHALFDVVESCIRAGGALTPAQIGEVLLRNR 442 (530)
Q Consensus 390 ~~~~p~~~~r~~i~~~~l~~~~~~~~~~~i~~l~~~~~~~spadi~~~l~~~~ 442 (530)
+-++||.++|.+||+.++...... ....++.++..+.|||+|||.++|..+.
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~-~dvdl~~LA~~T~G~SGADL~~l~~eAa 58 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAG 58 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEEC-TTCCCHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 357899999999999999865433 1123678888899999999999997443
No 123
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.23 E-value=0.0013 Score=62.98 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=21.9
Q ss_pred cCCCCceEEEECCCCCChhHHHHHHH
Q 009640 224 GRAWKRGYLLYGPPGSGKSSLIAAMA 249 (530)
Q Consensus 224 g~~~~rG~LL~GPPGTGKTsLa~AiA 249 (530)
|++...-+.|.||+|+|||||++.++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 34445568999999999999999998
No 124
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=97.23 E-value=0.00035 Score=55.53 Aligned_cols=50 Identities=8% Similarity=-0.220 Sum_probs=40.4
Q ss_pred CCCCHHHHHHHHHHhhCCcCccchHHHHHHHHHhCCCCCHHHHHHHHHHhc
Q 009640 392 GTCGPHAFKVLAKNYLGIESHHALFDVVESCIRAGGALTPAQIGEVLLRNR 442 (530)
Q Consensus 392 ~~p~~~~r~~i~~~~l~~~~~~~~~~~i~~l~~~~~~~spadi~~~l~~~~ 442 (530)
|+|+.++|..||+.++...... ....++.++..+.|||+|||.++|..+.
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~-~~~dl~~la~~t~G~SGADi~~l~~eA~ 50 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAG 50 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEEC-TTCCHHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 6899999999999999865443 1223788888899999999999997543
No 125
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.22 E-value=0.0002 Score=65.38 Aligned_cols=30 Identities=37% Similarity=0.382 Sum_probs=27.5
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
.++|.||||+||||+++++|..+++.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~ 35 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDS 35 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 588999999999999999999999888764
No 126
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.21 E-value=0.00067 Score=69.62 Aligned_cols=69 Identities=19% Similarity=0.204 Sum_probs=46.3
Q ss_pred cCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecCccC---------------------ChHHHHHHHH---h
Q 009640 224 GRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELTKVT---------------------DNSELRALLL---Q 276 (530)
Q Consensus 224 g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~~~~---------------------~~~~L~~l~~---~ 276 (530)
|++..+-++|+||||+|||+|+..+|..+ +..+..++..... +..++..++. .
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 45555669999999999999999988654 4555555543211 1122222222 2
Q ss_pred cCCCeEEEEcCccchh
Q 009640 277 TTNRSIIVIEDIDCSV 292 (530)
Q Consensus 277 ~~~~sII~IDeID~~~ 292 (530)
...+.+||||++..++
T Consensus 137 ~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 137 SGALDIIVIDSVAALV 152 (349)
T ss_dssp TTCCSEEEEECGGGCC
T ss_pred cCCCCEEEEcChHhhc
Confidence 3568999999999885
No 127
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.20 E-value=0.00024 Score=65.05 Aligned_cols=32 Identities=28% Similarity=0.389 Sum_probs=28.6
Q ss_pred CceEEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
++.++|.||||+||||+++++|..+++.++++
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 35699999999999999999999999888764
No 128
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.18 E-value=0.00026 Score=64.15 Aligned_cols=30 Identities=40% Similarity=0.681 Sum_probs=26.9
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCCcEEE
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCYDVYD 258 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~ 258 (530)
.-+.|.||||+||||+++.+|..++..+++
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 458999999999999999999999987665
No 129
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.18 E-value=0.00068 Score=68.67 Aligned_cols=40 Identities=18% Similarity=0.206 Sum_probs=30.9
Q ss_pred cCCCCceEEEECCCCCChhHHHHHHHHHc---------CCcEEEEecCc
Q 009640 224 GRAWKRGYLLYGPPGSGKSSLIAAMANYL---------CYDVYDLELTK 263 (530)
Q Consensus 224 g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---------~~~i~~l~l~~ 263 (530)
|++...-++|+||||+|||+|+..+|... +..++.++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 45666679999999999999999999875 44566665543
No 130
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.15 E-value=0.00028 Score=63.84 Aligned_cols=31 Identities=39% Similarity=0.435 Sum_probs=28.8
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
..++|.|+||+||||+++.+|..+++++++.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 4789999999999999999999999999875
No 131
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.14 E-value=0.00021 Score=66.03 Aligned_cols=32 Identities=25% Similarity=0.446 Sum_probs=28.0
Q ss_pred CceEEEECCCCCChhHHHHHHHHH-cCCcEEEE
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANY-LCYDVYDL 259 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~-l~~~i~~l 259 (530)
...++|.|+|||||||+++.+|.. +++.++++
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~ 42 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEV 42 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence 345899999999999999999999 78887765
No 132
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.13 E-value=0.00029 Score=64.63 Aligned_cols=31 Identities=35% Similarity=0.489 Sum_probs=28.1
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCcEEEEe
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCYDVYDLE 260 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~ 260 (530)
-++|.|+||+||||+++.+|..+++.+++.+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 4899999999999999999999999988753
No 133
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.13 E-value=0.00087 Score=66.09 Aligned_cols=29 Identities=28% Similarity=0.241 Sum_probs=23.7
Q ss_pred cCCCCceEEEECCCCCChhHHHHHHHHHc
Q 009640 224 GRAWKRGYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 224 g~~~~rG~LL~GPPGTGKTsLa~AiA~~l 252 (530)
|++...-++|+||||+|||+|+..+|..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 44445568999999999999999998754
No 134
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.12 E-value=0.00096 Score=68.66 Aligned_cols=69 Identities=16% Similarity=0.218 Sum_probs=48.3
Q ss_pred cCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecCccC---------------------ChHHHHHHHH---h
Q 009640 224 GRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELTKVT---------------------DNSELRALLL---Q 276 (530)
Q Consensus 224 g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~~~~---------------------~~~~L~~l~~---~ 276 (530)
|++..+-++|+||||+|||+|+..+|..+ +..+..++..... +...+..++. .
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 46666779999999999999999988765 5566666653211 1223333333 2
Q ss_pred cCCCeEEEEcCccchh
Q 009640 277 TTNRSIIVIEDIDCSV 292 (530)
Q Consensus 277 ~~~~sII~IDeID~~~ 292 (530)
...+.+||||.+..+.
T Consensus 139 ~~~~~lVVIDsl~~l~ 154 (356)
T 1u94_A 139 SGAVDVIVVDSVAALT 154 (356)
T ss_dssp HTCCSEEEEECGGGCC
T ss_pred ccCCCEEEEcCHHHhc
Confidence 3678999999999874
No 135
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.08 E-value=0.00029 Score=68.82 Aligned_cols=32 Identities=31% Similarity=0.468 Sum_probs=28.4
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCcEEEEec
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCYDVYDLEL 261 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l 261 (530)
-++|.||||+||||+++++|..+++.+++.+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 47899999999999999999999988877653
No 136
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.07 E-value=0.00035 Score=63.19 Aligned_cols=30 Identities=23% Similarity=0.414 Sum_probs=27.5
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
-++|.|+||+||||+++.+|..+++.+++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVDT 33 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcc
Confidence 589999999999999999999999988764
No 137
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.06 E-value=0.00083 Score=66.94 Aligned_cols=57 Identities=28% Similarity=0.412 Sum_probs=37.1
Q ss_pred hhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEEEec
Q 009640 200 PQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLEL 261 (530)
Q Consensus 200 ~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l 261 (530)
+++.+.+.+.+..++... .....+.-++|.||||+||||++++++..++..++.++.
T Consensus 10 ~~~~~~~~~~~~~~l~~~-----~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~ 66 (287)
T 1gvn_B 10 KQFENRLNDNLEELIQGK-----KAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66 (287)
T ss_dssp HHHHHHHHHHHHHHHTTC-----CCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECT
T ss_pred HHHHHHHHHHHHHHhccc-----cCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 344444555555555431 112234568899999999999999999998544555543
No 138
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.05 E-value=0.001 Score=68.14 Aligned_cols=29 Identities=28% Similarity=0.340 Sum_probs=25.4
Q ss_pred cCCCCceEEEECCCCCChhHHHHHHHHHc
Q 009640 224 GRAWKRGYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 224 g~~~~rG~LL~GPPGTGKTsLa~AiA~~l 252 (530)
|++...-++|+||||+|||+|+..+|..+
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 55666668999999999999999999887
No 139
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.01 E-value=0.00041 Score=62.24 Aligned_cols=29 Identities=31% Similarity=0.356 Sum_probs=26.1
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
-++|.||||+||||+++.+ ..+|+.++++
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 4789999999999999999 8999887764
No 140
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.01 E-value=0.0032 Score=59.08 Aligned_cols=32 Identities=16% Similarity=0.160 Sum_probs=27.2
Q ss_pred eEEEECCCCCChhHHHHHHHHHc---CCcEEEEec
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYL---CYDVYDLEL 261 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l 261 (530)
-+++|+++|+||||.|-++|-.. |+.++.+..
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF 64 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQF 64 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEe
Confidence 47889999999999999998765 788887754
No 141
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.99 E-value=0.00056 Score=63.81 Aligned_cols=31 Identities=32% Similarity=0.477 Sum_probs=27.9
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
.-++|.||||+||||+++.+|..+++.++++
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 3588999999999999999999999887765
No 142
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.99 E-value=0.0077 Score=57.81 Aligned_cols=33 Identities=21% Similarity=0.153 Sum_probs=27.0
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc---CCcEEEEec
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLEL 261 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l 261 (530)
-.+++.|+||+|||+++.++|..+ |+++..+.+
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 358899999999999999999876 777665544
No 143
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.98 E-value=0.00049 Score=63.25 Aligned_cols=31 Identities=23% Similarity=0.354 Sum_probs=27.3
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
.-++|.|+||+||||+++.+|..+++.+++.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 34 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLSA 34 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 4588999999999999999999999877653
No 144
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.98 E-value=0.00052 Score=62.92 Aligned_cols=32 Identities=22% Similarity=0.316 Sum_probs=28.3
Q ss_pred CceEEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
+.-++|.|+||+||||+++.+|..+++.+++.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 35689999999999999999999999877765
No 145
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.96 E-value=0.0004 Score=63.66 Aligned_cols=30 Identities=27% Similarity=0.576 Sum_probs=26.5
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
-++|.||||+||||+++.+|..+++.+++.
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l~~~~i~~ 35 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQELGFKKLST 35 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEECH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 478999999999999999999999776654
No 146
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.96 E-value=0.002 Score=65.73 Aligned_cols=40 Identities=13% Similarity=0.046 Sum_probs=30.1
Q ss_pred cCCCCceEEEECCCCCChhHHHHHHHHHc---------CCcEEEEecCc
Q 009640 224 GRAWKRGYLLYGPPGSGKSSLIAAMANYL---------CYDVYDLELTK 263 (530)
Q Consensus 224 g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---------~~~i~~l~l~~ 263 (530)
|++...-++|+||||+|||+|+..+|... +..++.++...
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 45555668999999999999999999873 44566665443
No 147
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.96 E-value=0.00039 Score=63.76 Aligned_cols=30 Identities=20% Similarity=0.367 Sum_probs=25.8
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcC-----CcEEE
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLC-----YDVYD 258 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~-----~~i~~ 258 (530)
.-++|.||||+||||+++.+|..++ +.+++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~ 38 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVS 38 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEe
Confidence 3588999999999999999999987 65554
No 148
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.95 E-value=0.00055 Score=61.64 Aligned_cols=30 Identities=30% Similarity=0.339 Sum_probs=27.2
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
-++|.|+||+||||+++.+|..+++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 378999999999999999999999888764
No 149
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.94 E-value=0.0015 Score=67.26 Aligned_cols=60 Identities=30% Similarity=0.477 Sum_probs=39.7
Q ss_pred eEEEECCCCCChhHHHHHHHHHcC----CcEEEEecC-cc---------------CChHHHHHHHHhc--CCCeEEEEcC
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLC----YDVYDLELT-KV---------------TDNSELRALLLQT--TNRSIIVIED 287 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~----~~i~~l~l~-~~---------------~~~~~L~~l~~~~--~~~sII~IDe 287 (530)
-+++.||+|+||||++++|++.+. ..++.++-. +. .....+...+..+ ..|.||++||
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillDE 204 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVGE 204 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEESC
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecCC
Confidence 478899999999999999998873 344443210 00 0111233444444 7899999999
Q ss_pred cc
Q 009640 288 ID 289 (530)
Q Consensus 288 ID 289 (530)
+-
T Consensus 205 p~ 206 (356)
T 3jvv_A 205 MR 206 (356)
T ss_dssp CC
T ss_pred CC
Confidence 84
No 150
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.93 E-value=0.00057 Score=63.82 Aligned_cols=31 Identities=32% Similarity=0.377 Sum_probs=27.5
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
.-++|.||||+||||+++.++..+++.+++.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~ 49 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACGYPFIEG 49 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHTCCEEEG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCEEEeC
Confidence 4689999999999999999999998777663
No 151
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.93 E-value=0.00058 Score=64.42 Aligned_cols=29 Identities=21% Similarity=0.285 Sum_probs=26.7
Q ss_pred EEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 231 YLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 231 ~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
++|.||||+||||+++.+|..+++.+++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 78999999999999999999999887765
No 152
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.93 E-value=0.0016 Score=67.23 Aligned_cols=69 Identities=14% Similarity=0.231 Sum_probs=47.3
Q ss_pred cCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecCccC---------------------ChHHHHHHHHh---
Q 009640 224 GRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELTKVT---------------------DNSELRALLLQ--- 276 (530)
Q Consensus 224 g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~~~~---------------------~~~~L~~l~~~--- 276 (530)
|++..+-++|+||||+|||+|+..+|..+ +..+..+++.... +..++...+..
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 45566679999999999999999888765 5566666543211 11233333332
Q ss_pred cCCCeEEEEcCccchh
Q 009640 277 TTNRSIIVIEDIDCSV 292 (530)
Q Consensus 277 ~~~~sII~IDeID~~~ 292 (530)
...+.+||||.+..+.
T Consensus 150 ~~~~~lVVIDsl~~l~ 165 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALT 165 (366)
T ss_dssp TTCCSEEEEECTTTCC
T ss_pred cCCCCEEEEeChHHhc
Confidence 3568999999999874
No 153
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.92 E-value=0.00037 Score=63.28 Aligned_cols=29 Identities=28% Similarity=0.289 Sum_probs=23.7
Q ss_pred ceEEEECCCCCChhHHHHHHHH-HcCCcEE
Q 009640 229 RGYLLYGPPGSGKSSLIAAMAN-YLCYDVY 257 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~-~l~~~i~ 257 (530)
.-++|.||||+||||+++.++. .+++.++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i 32 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEEe
Confidence 4588999999999999999998 4554433
No 154
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.92 E-value=0.00055 Score=64.91 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=27.7
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
.-++|.||||+||||+++.+|..+++.+++.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 3588999999999999999999999887765
No 155
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.91 E-value=0.0021 Score=60.07 Aligned_cols=23 Identities=43% Similarity=0.765 Sum_probs=21.1
Q ss_pred eEEEECCCCCChhHHHHHHHHHc
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l 252 (530)
-+.|.||+|+|||||++.||..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 36789999999999999999987
No 156
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.90 E-value=0.00061 Score=62.85 Aligned_cols=31 Identities=23% Similarity=0.345 Sum_probs=28.0
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
.-++|.||||+||||+++.+|..+++.+++.
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 4688999999999999999999999887765
No 157
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.90 E-value=0.0054 Score=58.80 Aligned_cols=61 Identities=13% Similarity=0.213 Sum_probs=40.3
Q ss_pred EEEECCCCCChhHHHHHHHHHc---CCcEEEEecCc-------c-------------CChHHHHHHHHhc---CCCeEEE
Q 009640 231 YLLYGPPGSGKSSLIAAMANYL---CYDVYDLELTK-------V-------------TDNSELRALLLQT---TNRSIIV 284 (530)
Q Consensus 231 ~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~~-------~-------------~~~~~L~~l~~~~---~~~sII~ 284 (530)
++++||||+||||++..++..+ +..++.+.... + ....++...+.+. ..+.+|+
T Consensus 15 ~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~dvVi 94 (223)
T 2b8t_A 15 EFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETKVIG 94 (223)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCCEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCCCEEE
Confidence 6778999999999998888766 56666663211 1 0122444444432 3578999
Q ss_pred EcCccch
Q 009640 285 IEDIDCS 291 (530)
Q Consensus 285 IDeID~~ 291 (530)
|||+..+
T Consensus 95 IDEaQ~l 101 (223)
T 2b8t_A 95 IDEVQFF 101 (223)
T ss_dssp ECSGGGS
T ss_pred EecCccC
Confidence 9999864
No 158
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.88 E-value=0.00066 Score=63.96 Aligned_cols=29 Identities=21% Similarity=0.303 Sum_probs=26.6
Q ss_pred EEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 231 YLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 231 ~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
++|.||||+||||+++.+|..++..+++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 68899999999999999999999887765
No 159
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.87 E-value=0.00063 Score=64.50 Aligned_cols=31 Identities=23% Similarity=0.395 Sum_probs=27.5
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
.-++|.||||+||||+++.+|..+++.+++.
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 4588999999999999999999999877664
No 160
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.87 E-value=0.00067 Score=62.73 Aligned_cols=31 Identities=19% Similarity=0.363 Sum_probs=27.8
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
.-++|.||||+||||+++.+|..+++.+++.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 4688999999999999999999999877765
No 161
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.86 E-value=0.00065 Score=64.78 Aligned_cols=32 Identities=19% Similarity=0.311 Sum_probs=28.2
Q ss_pred CceEEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
+.-++|.||||+||||+++.+|..+++.++++
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 35689999999999999999999999877764
No 162
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.86 E-value=0.00059 Score=62.30 Aligned_cols=29 Identities=21% Similarity=0.196 Sum_probs=22.6
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCCcEE
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCYDVY 257 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~~i~ 257 (530)
.-++|.|+||+||||+++.+|..++..++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 45889999999999999999999999877
No 163
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.84 E-value=0.00071 Score=61.47 Aligned_cols=31 Identities=35% Similarity=0.461 Sum_probs=26.5
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
.-++|.||||+||||+++.++..+|..+++.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~ 39 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLHAAFLDG 39 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHTCEEEEG
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhCcEEEeC
Confidence 3578999999999999999999988766553
No 164
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.82 E-value=0.0008 Score=64.51 Aligned_cols=31 Identities=29% Similarity=0.533 Sum_probs=27.7
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
.-++|.|+||+||||+++.||..+++.+++.
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 4589999999999999999999999877664
No 165
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.78 E-value=0.00085 Score=62.53 Aligned_cols=31 Identities=16% Similarity=0.313 Sum_probs=27.4
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
.-++|.||||+||||+++.+|..+++.+++.
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 4588999999999999999999999877764
No 166
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.77 E-value=0.0013 Score=63.99 Aligned_cols=34 Identities=18% Similarity=0.207 Sum_probs=27.9
Q ss_pred CceEEEECCCCCChhHHHHHHHHHcCCcEEEEec
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLEL 261 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l 261 (530)
+.-++|.||||+||||+++.++..++..++.++.
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~ 65 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDG 65 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEec
Confidence 4568899999999999999999999765555543
No 167
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=96.76 E-value=0.00042 Score=56.57 Aligned_cols=47 Identities=13% Similarity=-0.197 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHhhCCcCccchHHHHHHHHHhCCCCCHHHHHHHHHHhc
Q 009640 395 GPHAFKVLAKNYLGIESHHALFDVVESCIRAGGALTPAQIGEVLLRNR 442 (530)
Q Consensus 395 ~~~~r~~i~~~~l~~~~~~~~~~~i~~l~~~~~~~spadi~~~l~~~~ 442 (530)
|.++|.+||+.++...... ....++.++..|.|||+|||.++|..+.
T Consensus 2 d~~~R~~Il~~~~~~~~~~-~dvdl~~lA~~t~G~SGADl~~l~~eAa 48 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVE-RGIRWELISRLCPNSTGAELRSVCTEAG 48 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBC-SCCCHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCC-CccCHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 5678999999999865543 2224788888999999999999997543
No 168
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.76 E-value=0.0011 Score=60.87 Aligned_cols=30 Identities=30% Similarity=0.352 Sum_probs=27.6
Q ss_pred EEEECCCCCChhHHHHHHHHHc---CCcEEEEe
Q 009640 231 YLLYGPPGSGKSSLIAAMANYL---CYDVYDLE 260 (530)
Q Consensus 231 ~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~ 260 (530)
+.|.|+||+||||+++.++..+ |+.+++.+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 6899999999999999999998 89988875
No 169
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.72 E-value=0.00072 Score=64.17 Aligned_cols=32 Identities=16% Similarity=0.190 Sum_probs=27.6
Q ss_pred CceEEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
+.-++|.||||+||||+++.+|..++..++++
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 36 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAHISA 36 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEECCH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 34689999999999999999999999766553
No 170
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.71 E-value=0.00096 Score=62.95 Aligned_cols=29 Identities=17% Similarity=0.225 Sum_probs=26.6
Q ss_pred EEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 231 YLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 231 ~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
++|.||||+||||+++.+|..+++.+++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 78999999999999999999999887765
No 171
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.71 E-value=0.0012 Score=61.73 Aligned_cols=30 Identities=23% Similarity=0.419 Sum_probs=25.8
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCCcEEE
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCYDVYD 258 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~ 258 (530)
.-+.|.||||+||||++++||..+|..+++
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~ 59 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADETGLEFAE 59 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEEc
Confidence 458899999999999999999999765554
No 172
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.71 E-value=0.00086 Score=61.68 Aligned_cols=32 Identities=38% Similarity=0.450 Sum_probs=25.6
Q ss_pred CceEEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
..-+.|.||||+||||++++||..++...+.+
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i 40 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANLPGVPKVHF 40 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTCSSSCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHhccCCCeEEE
Confidence 34588999999999999999998765554443
No 173
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.70 E-value=0.0006 Score=69.93 Aligned_cols=50 Identities=20% Similarity=0.300 Sum_probs=37.4
Q ss_pred hhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHcCCcEEE
Q 009640 200 PQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYLCYDVYD 258 (530)
Q Consensus 200 ~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~ 258 (530)
+.+.+.+.+.+...+...+ ...++|.||||+||||++++||+.++++++.
T Consensus 5 ~~L~~~il~~l~~~i~~g~---------~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 5 HKLADDVLQLLDNRIEDNY---------RVCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp HHHHHHHHHHHHHTTTTCS---------CEEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCC---------eeEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 4556666666665554322 2468999999999999999999999888744
No 174
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.66 E-value=0.0012 Score=63.72 Aligned_cols=30 Identities=27% Similarity=0.501 Sum_probs=26.4
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCCcEEE
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCYDVYD 258 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~ 258 (530)
.-+.|.||||+||||+++.||..+|...++
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 568899999999999999999999876554
No 175
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.65 E-value=0.0016 Score=59.45 Aligned_cols=32 Identities=31% Similarity=0.527 Sum_probs=28.3
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc---CCcEEEEe
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLE 260 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~ 260 (530)
.-+.|.|++|+||||+++.++..+ |++++.++
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d 40 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 40 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEEC
Confidence 347789999999999999999998 88888775
No 176
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.64 E-value=0.0012 Score=63.02 Aligned_cols=29 Identities=24% Similarity=0.419 Sum_probs=25.9
Q ss_pred EEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 231 YLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 231 ~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
++|.||||+||||+++.+|..+++.+++.
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 68999999999999999999998766554
No 177
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.62 E-value=0.0012 Score=66.86 Aligned_cols=34 Identities=26% Similarity=0.481 Sum_probs=30.3
Q ss_pred CceEEEECCCCCChhHHHHHHHHHcCCcEEEEec
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLEL 261 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l 261 (530)
++.++|.||+|+|||+++.++|..++..+++++.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds 38 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDS 38 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccc
Confidence 3578999999999999999999999988888853
No 178
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.62 E-value=0.0031 Score=69.95 Aligned_cols=57 Identities=23% Similarity=0.323 Sum_probs=37.6
Q ss_pred CcccccCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecCc
Q 009640 192 TFETLALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELTK 263 (530)
Q Consensus 192 ~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~~ 263 (530)
.|-+-..++.++++|...+. .+ .-.|++||||||||+++..+..++ +..+.-+..+.
T Consensus 184 ~~~~~~LN~~Q~~AV~~al~----~~-----------~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN 243 (646)
T 4b3f_X 184 TFFNTCLDTSQKEAVLFALS----QK-----------ELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSN 243 (646)
T ss_dssp CCSSTTCCHHHHHHHHHHHH----CS-----------SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred cccCCCCCHHHHHHHHHHhc----CC-----------CceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCch
Confidence 33333567888887766542 11 246899999999999777666554 66666665543
No 179
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.60 E-value=0.0026 Score=64.08 Aligned_cols=28 Identities=21% Similarity=0.184 Sum_probs=23.9
Q ss_pred cCCCCceEEEECCCCCChhHHHHHHHHH
Q 009640 224 GRAWKRGYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 224 g~~~~rG~LL~GPPGTGKTsLa~AiA~~ 251 (530)
|++...-++|+||||+|||+|+..+|..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4555566899999999999999999875
No 180
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.60 E-value=0.0015 Score=63.16 Aligned_cols=32 Identities=28% Similarity=0.562 Sum_probs=28.2
Q ss_pred CceEEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
+.-++|.||||+||||+++.++..++..+++.
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 34689999999999999999999998877765
No 181
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.59 E-value=0.0017 Score=59.84 Aligned_cols=31 Identities=35% Similarity=0.348 Sum_probs=26.6
Q ss_pred EEEECCCCCChhHHHHHHHHHc---CCcEEEEec
Q 009640 231 YLLYGPPGSGKSSLIAAMANYL---CYDVYDLEL 261 (530)
Q Consensus 231 ~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l 261 (530)
+.|.||||+||||+++.++..+ |++++...-
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 6789999999999999999999 998876643
No 182
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.58 E-value=0.0014 Score=62.76 Aligned_cols=30 Identities=20% Similarity=0.441 Sum_probs=26.3
Q ss_pred CceEEEECCCCCChhHHHHHHHHHcCCcEE
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYLCYDVY 257 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~ 257 (530)
++-++|.||||+||+|.++.||..+++..+
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~g~~hI 58 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKFHFNHL 58 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHHCCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHCCceE
Confidence 467889999999999999999999987654
No 183
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.58 E-value=0.0031 Score=76.37 Aligned_cols=69 Identities=16% Similarity=0.210 Sum_probs=51.0
Q ss_pred cCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecCccC---------------------ChHHHHHHHHh---
Q 009640 224 GRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELTKVT---------------------DNSELRALLLQ--- 276 (530)
Q Consensus 224 g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~~~~---------------------~~~~L~~l~~~--- 276 (530)
|++..+.++|+||||||||+|+.++|... +..++.++..... ....+.+++..
T Consensus 30 Gi~~G~i~lI~G~pGsGKT~LAlqla~~~~~~G~~vlYI~te~~~~~l~~~~lg~dl~~i~i~~p~t~e~l~~ll~~L~~ 109 (1706)
T 3cmw_A 30 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 109 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCeEEEEECCCCCCHHHHHHHHHHHHhhCCCceEEEEecCccHHHHHHhhccCccceeeeccCcHHHHHHHHHHHHh
Confidence 67778889999999999999999988753 6677777655431 12334444433
Q ss_pred cCCCeEEEEcCccchh
Q 009640 277 TTNRSIIVIEDIDCSV 292 (530)
Q Consensus 277 ~~~~sII~IDeID~~~ 292 (530)
...+.+||||+|..++
T Consensus 110 ~~~~~LVVIDSLt~L~ 125 (1706)
T 3cmw_A 110 SGAVDVIVVDSVAALT 125 (1706)
T ss_dssp HTCCSEEEESCSTTCC
T ss_pred ccCCCEEEEcchhhhc
Confidence 3678999999999985
No 184
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.58 E-value=0.00086 Score=61.45 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=22.1
Q ss_pred eEEEECCCCCChhHHHHHHHHHcC
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLC 253 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~ 253 (530)
-++|.||||+||||+++.++..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999886
No 185
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.58 E-value=0.0013 Score=60.84 Aligned_cols=28 Identities=29% Similarity=0.703 Sum_probs=25.2
Q ss_pred EEEECCCCCChhHHHHHHHHHcCCcEEE
Q 009640 231 YLLYGPPGSGKSSLIAAMANYLCYDVYD 258 (530)
Q Consensus 231 ~LL~GPPGTGKTsLa~AiA~~l~~~i~~ 258 (530)
+.|.|+||+||||+++.+|..++..++.
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 6899999999999999999999986653
No 186
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.57 E-value=0.0014 Score=62.03 Aligned_cols=31 Identities=35% Similarity=0.523 Sum_probs=27.2
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
.-+.|.||||+||||+++.+|..+++++++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~ 36 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLDS 36 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccC
Confidence 3578999999999999999999999877653
No 187
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.57 E-value=0.0024 Score=59.38 Aligned_cols=31 Identities=29% Similarity=0.315 Sum_probs=25.8
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCCc--EEEE
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCYD--VYDL 259 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~~--i~~l 259 (530)
.-++|.||||+||||+++.+|..++.. ++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~ 37 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKRDVYLT 37 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEe
Confidence 357899999999999999999998773 5443
No 188
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.54 E-value=0.0046 Score=65.20 Aligned_cols=58 Identities=22% Similarity=0.281 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHHHcChh-hHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEe
Q 009640 202 LKKQITEDLTAFANGKE-FYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLE 260 (530)
Q Consensus 202 ~k~~i~~~l~~~l~~~~-~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~ 260 (530)
+.+.+.+.+...+.... .+. +....++-+++.||||+||||++.++|..+ |..+.-++
T Consensus 73 ~~~~~~~~l~~ll~~~~~~~~-~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~ 134 (432)
T 2v3c_C 73 IIKIVYEELVKLLGEEAKKLE-LNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIA 134 (432)
T ss_dssp HHHHHHHHHHHHHCCSCCCCC-CCSSSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEEC
T ss_pred HHHHHHHHHHHHhCCCCcCcc-ccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 45555555666554321 010 001123568999999999999999999987 35555444
No 189
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.54 E-value=0.0015 Score=61.81 Aligned_cols=28 Identities=25% Similarity=0.487 Sum_probs=24.9
Q ss_pred EEEECCCCCChhHHHHHHHHHcCCcEEE
Q 009640 231 YLLYGPPGSGKSSLIAAMANYLCYDVYD 258 (530)
Q Consensus 231 ~LL~GPPGTGKTsLa~AiA~~l~~~i~~ 258 (530)
++|.||||+||+|.++.||..+++..++
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~is 30 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVHIS 30 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEc
Confidence 6789999999999999999999876544
No 190
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.53 E-value=0.0014 Score=60.78 Aligned_cols=33 Identities=15% Similarity=0.174 Sum_probs=28.6
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc-CCcEEEEec
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYL-CYDVYDLEL 261 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l-~~~i~~l~l 261 (530)
.-+.|.||||+||||+++.+|..+ +++++++..
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~ 38 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF 38 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec
Confidence 357899999999999999999999 588887754
No 191
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.53 E-value=0.0069 Score=58.31 Aligned_cols=33 Identities=27% Similarity=0.189 Sum_probs=27.6
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCcEEEEecC
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCYDVYDLELT 262 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~ 262 (530)
.+++.||+|+|||.++.+++..++..++.+..+
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 489999999999999999999887777666543
No 192
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.53 E-value=0.0017 Score=60.37 Aligned_cols=31 Identities=29% Similarity=0.245 Sum_probs=28.2
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCcEEEEe
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCYDVYDLE 260 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~ 260 (530)
-+.|.||||+||||+++.+|..+++++++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 5789999999999999999999999988854
No 193
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.48 E-value=0.021 Score=56.97 Aligned_cols=58 Identities=16% Similarity=0.214 Sum_probs=36.2
Q ss_pred hhhHHHHHHHHHHHcChhhHhhhc-CCCCceEEEECCCCCChhHHHHHHHHHc----CCcEEEEec
Q 009640 201 QLKKQITEDLTAFANGKEFYHRVG-RAWKRGYLLYGPPGSGKSSLIAAMANYL----CYDVYDLEL 261 (530)
Q Consensus 201 ~~k~~i~~~l~~~l~~~~~y~~~g-~~~~rG~LL~GPPGTGKTsLa~AiA~~l----~~~i~~l~l 261 (530)
.+++.+.+.+...+..... .. ...+.-++|.||+|+||||++..+|..+ |..+.-+..
T Consensus 80 ~~~~~~~~~l~~~l~~~~~---~~~~~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~ 142 (296)
T 2px0_A 80 NVVGKLQEILCDMLPSADK---WQEPIHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT 142 (296)
T ss_dssp THHHHHHHHHHTTSCCGGG---SCCCCCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred HHHHHHHHHHHHHhCCccc---ccccCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 3555555555555533221 11 1124568899999999999999999876 445555443
No 194
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.47 E-value=0.002 Score=62.34 Aligned_cols=31 Identities=32% Similarity=0.356 Sum_probs=27.9
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
.-+.|.||||+||||+++.||..+++.+++.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~d~ 40 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYLDT 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccC
Confidence 4688999999999999999999999887765
No 195
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.45 E-value=0.0017 Score=60.51 Aligned_cols=30 Identities=30% Similarity=0.312 Sum_probs=26.4
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCcEEEEe
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCYDVYDLE 260 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~ 260 (530)
-+.|.||||+||||+++.+|. +|+.+++.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 378999999999999999999 888877754
No 196
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.44 E-value=0.0017 Score=60.65 Aligned_cols=29 Identities=28% Similarity=0.294 Sum_probs=25.7
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
-+.|.||||+||||+++.+|. +|+.+++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id~ 32 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVDA 32 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccch
Confidence 467899999999999999998 88888765
No 197
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.42 E-value=0.0041 Score=59.13 Aligned_cols=28 Identities=18% Similarity=0.181 Sum_probs=23.9
Q ss_pred cCCCCceEEEECCCCCChhHHHHHHHHH
Q 009640 224 GRAWKRGYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 224 g~~~~rG~LL~GPPGTGKTsLa~AiA~~ 251 (530)
|++...-++|+||||+|||+|+..+|..
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4555566899999999999999999985
No 198
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.41 E-value=0.033 Score=60.41 Aligned_cols=43 Identities=2% Similarity=0.115 Sum_probs=36.2
Q ss_pred CCCeEEEEEeCCCC--CCChhhhcCCceeEEEEeCCCCHHHHHHHHH
Q 009640 360 SEEKIIVFTTNHRD--SVDPALIRCGRMDVHVSLGTCGPHAFKVLAK 404 (530)
Q Consensus 360 ~~~~ivI~TTN~~~--~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~ 404 (530)
.-++-+|++|.+|. .|+..+.. -|...|.|...+...-+.++.
T Consensus 376 a~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 376 AAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSSKIDSRTILD 420 (574)
T ss_dssp TTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSCHHHHHHHHS
T ss_pred hCCeEEEEEecCcccccccHHHHh--hhccEEEEEcCCHHHHHHhcC
Confidence 45788999999987 78888877 788899999999988887763
No 199
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.40 E-value=0.0022 Score=62.69 Aligned_cols=31 Identities=39% Similarity=0.545 Sum_probs=28.8
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
..+.|.||||+||||+++.+|..+++.+++.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 4689999999999999999999999998885
No 200
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.29 E-value=0.0029 Score=61.82 Aligned_cols=32 Identities=34% Similarity=0.377 Sum_probs=27.1
Q ss_pred ceEEEECCCCCChhHHHHHHHHH---cCCcEEEEe
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANY---LCYDVYDLE 260 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~---l~~~i~~l~ 260 (530)
.-++|.|+||+||||+++.++.. +|+.++.++
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~ 39 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLG 39 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEEC
Confidence 35889999999999999999998 688877443
No 201
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.28 E-value=0.012 Score=54.50 Aligned_cols=24 Identities=21% Similarity=0.301 Sum_probs=17.9
Q ss_pred ceEEEECCCCCChhHH-HHHHHHHc
Q 009640 229 RGYLLYGPPGSGKSSL-IAAMANYL 252 (530)
Q Consensus 229 rG~LL~GPPGTGKTsL-a~AiA~~l 252 (530)
+.+++.+|+|+|||.. +.++...+
T Consensus 39 ~~~li~~~TGsGKT~~~~~~~~~~l 63 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFALPIAERL 63 (207)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CCEEEECCCCChHHHHHHHHHHHHH
Confidence 5799999999999986 33444443
No 202
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.28 E-value=0.00098 Score=62.32 Aligned_cols=30 Identities=23% Similarity=0.270 Sum_probs=24.7
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCCcEEE
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCYDVYD 258 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~ 258 (530)
.-+.|.|+||+||||+++.+|..++...++
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~~~~~~ 40 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLKNNNVE 40 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHcCCc
Confidence 457899999999999999999987554333
No 203
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.23 E-value=0.0042 Score=57.88 Aligned_cols=24 Identities=38% Similarity=0.461 Sum_probs=22.0
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l 252 (530)
.-+.|.||+|+||||+++++|..+
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 457789999999999999999998
No 204
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.23 E-value=0.0058 Score=55.59 Aligned_cols=18 Identities=39% Similarity=0.554 Sum_probs=16.3
Q ss_pred ceEEEECCCCCChhHHHH
Q 009640 229 RGYLLYGPPGSGKSSLIA 246 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~ 246 (530)
.-+.|.||+|+|||||++
T Consensus 10 ei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 347899999999999999
No 205
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.22 E-value=0.0031 Score=58.98 Aligned_cols=31 Identities=23% Similarity=0.278 Sum_probs=27.7
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCcEEEEe
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCYDVYDLE 260 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~ 260 (530)
-+.|.|++|+||||+++.+|..+|+++++.+
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid~D 44 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVNVD 44 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEECc
Confidence 4678999999999999999999999888853
No 206
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.22 E-value=0.011 Score=59.72 Aligned_cols=68 Identities=16% Similarity=0.123 Sum_probs=42.3
Q ss_pred cCCCCceEEEECCCCCChhHHHHHHHHHc-----CCcEEEEecCcc---------------------CChHHH-HHH---
Q 009640 224 GRAWKRGYLLYGPPGSGKSSLIAAMANYL-----CYDVYDLELTKV---------------------TDNSEL-RAL--- 273 (530)
Q Consensus 224 g~~~~rG~LL~GPPGTGKTsLa~AiA~~l-----~~~i~~l~l~~~---------------------~~~~~L-~~l--- 273 (530)
|++.. -++++||||+|||+|+..++..+ +..+..++...- .+..++ ..+
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 35544 47899999999999977665543 445555553221 112222 222
Q ss_pred H--HhcCCCeEEEEcCccchh
Q 009640 274 L--LQTTNRSIIVIEDIDCSV 292 (530)
Q Consensus 274 ~--~~~~~~sII~IDeID~~~ 292 (530)
+ .+..+|.+||||=|-.+.
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCB
T ss_pred HHHhhccCceEEEEecccccc
Confidence 2 123579999999999874
No 207
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.17 E-value=0.0045 Score=65.41 Aligned_cols=59 Identities=15% Similarity=0.259 Sum_probs=45.8
Q ss_pred hHHHHhhhccCCccC------CCCCeEEEEEe----CCCCCCChhhhcCCceeEEEEeCCCCHHHHHHHHH
Q 009640 344 TLSGLLNFTDGLWSC------CSEEKIIVFTT----NHRDSVDPALIRCGRMDVHVSLGTCGPHAFKVLAK 404 (530)
Q Consensus 344 ~ls~LLn~lDgl~s~------~~~~~ivI~TT----N~~~~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~ 404 (530)
+...||..|||-... ..+++++|+|. +.+.++-|.|+. ||+.+|.|+..+.+++..|+.
T Consensus 278 vq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~--R~~i~i~l~~lt~~e~~~Il~ 346 (444)
T 1g41_A 278 VQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILT 346 (444)
T ss_dssp HHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHH
T ss_pred HHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhc--ccceeeeCCCCCHHHHHHHHH
Confidence 557899999984321 24668888887 244556688888 999999999999999999984
No 208
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=96.12 E-value=0.021 Score=53.56 Aligned_cols=60 Identities=13% Similarity=0.076 Sum_probs=34.3
Q ss_pred CCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcC---CCCceEEEECCCCCChhHH-HHHHHHH
Q 009640 189 HPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGR---AWKRGYLLYGPPGSGKSSL-IAAMANY 251 (530)
Q Consensus 189 ~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~---~~~rG~LL~GPPGTGKTsL-a~AiA~~ 251 (530)
...+|+++...+.+.+.+.+. -...+..|+...+ .-.+.+++.+|+|+|||.. +.++...
T Consensus 12 ~~~~f~~l~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~ 75 (224)
T 1qde_A 12 VVYKFDDMELDENLLRGVFGY---GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQR 75 (224)
T ss_dssp CCCCGGGGTCCHHHHHHHHHH---TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHH
Confidence 345789988777766655431 1122222322111 1135799999999999976 3344443
No 209
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.09 E-value=0.0084 Score=56.37 Aligned_cols=29 Identities=28% Similarity=0.340 Sum_probs=24.1
Q ss_pred cCCCCceEEEECCCCCChhHHHHHHHHHc
Q 009640 224 GRAWKRGYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 224 g~~~~rG~LL~GPPGTGKTsLa~AiA~~l 252 (530)
|++...-+.|.||+|+|||||++.||..+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 44444568999999999999999999855
No 210
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.09 E-value=0.0038 Score=60.68 Aligned_cols=31 Identities=32% Similarity=0.499 Sum_probs=27.4
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
.-+.|.||+|+||||+++.+|..+|+.+++-
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~ 58 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLLDS 58 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcCCC
Confidence 3578999999999999999999999887763
No 211
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.08 E-value=0.0037 Score=57.47 Aligned_cols=25 Identities=36% Similarity=0.533 Sum_probs=21.9
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCC
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCY 254 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~ 254 (530)
-+.|.||||+||||+++.|+..++.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g 28 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN 28 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC
Confidence 4788999999999999999986654
No 212
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=96.08 E-value=0.034 Score=52.01 Aligned_cols=59 Identities=19% Similarity=0.190 Sum_probs=33.6
Q ss_pred CCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCC---CCceEEEECCCCCChhHHHHHHHH
Q 009640 189 HPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRA---WKRGYLLYGPPGSGKSSLIAAMAN 250 (530)
Q Consensus 189 ~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~---~~rG~LL~GPPGTGKTsLa~AiA~ 250 (530)
+..+|+++...+.+.+.+.+. -...+..|+...++ -.+.+++.+|+|+|||..+...+-
T Consensus 12 ~~~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~ 73 (220)
T 1t6n_A 12 HSSGFRDFLLKPELLRAIVDC---GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL 73 (220)
T ss_dssp --CCSTTSCCCHHHHHHHHHT---TCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCCHhhcCCCHHHHHHHHHC---CCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHH
Confidence 445788888777766655431 11223333322111 125699999999999986554443
No 213
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.08 E-value=0.0039 Score=57.61 Aligned_cols=31 Identities=35% Similarity=0.470 Sum_probs=27.4
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCCcEEEEe
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCYDVYDLE 260 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~ 260 (530)
.-+.|.|+||+||||+++.+|.. |+.+++.+
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-g~~~id~d 39 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-GYPVLDLD 39 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-TCCEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-CCEEEccc
Confidence 45889999999999999999998 88888754
No 214
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.06 E-value=0.0044 Score=58.27 Aligned_cols=31 Identities=29% Similarity=0.339 Sum_probs=28.1
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
.-+.|.|+||+|||++++.+|..+|+.+++.
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 3588999999999999999999999988875
No 215
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.01 E-value=0.0042 Score=58.51 Aligned_cols=30 Identities=40% Similarity=0.414 Sum_probs=26.4
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
.-+.|.|++|+||||+++.+|. +|+.+++.
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 3578999999999999999998 88887775
No 216
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.98 E-value=0.0018 Score=60.46 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=22.3
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcC
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLC 253 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~ 253 (530)
.-+.|.|+||+||||+++.+|..++
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4588999999999999999999874
No 217
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.98 E-value=0.0043 Score=58.01 Aligned_cols=28 Identities=29% Similarity=0.428 Sum_probs=24.4
Q ss_pred CCCceEEEECCCCCChhHHHHHHHHHcC
Q 009640 226 AWKRGYLLYGPPGSGKSSLIAAMANYLC 253 (530)
Q Consensus 226 ~~~rG~LL~GPPGTGKTsLa~AiA~~l~ 253 (530)
+..+-++|.||||+||||++++++..+.
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 3445688999999999999999999885
No 218
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.97 E-value=0.0056 Score=58.66 Aligned_cols=30 Identities=27% Similarity=0.421 Sum_probs=27.1
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
-+.|.|+||+||||+++.+|..+|+.+++.
T Consensus 18 ~i~i~G~~gsGKst~~~~l~~~lg~~~~d~ 47 (236)
T 1q3t_A 18 QIAIDGPASSGKSTVAKIIAKDFGFTYLDT 47 (236)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceecC
Confidence 477899999999999999999999888774
No 219
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.95 E-value=0.011 Score=55.52 Aligned_cols=32 Identities=25% Similarity=0.381 Sum_probs=26.1
Q ss_pred eEEEECCCCCChh-HHHHHHHHHc--CCcEEEEec
Q 009640 230 GYLLYGPPGSGKS-SLIAAMANYL--CYDVYDLEL 261 (530)
Q Consensus 230 G~LL~GPPGTGKT-sLa~AiA~~l--~~~i~~l~l 261 (530)
=+++|||.|+||| .|++++.++. +..++.+..
T Consensus 22 l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp 56 (195)
T 1w4r_A 22 IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKY 56 (195)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEcc
Confidence 4778999999999 8999998865 667777653
No 220
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.93 E-value=0.0056 Score=64.16 Aligned_cols=32 Identities=25% Similarity=0.255 Sum_probs=26.8
Q ss_pred CceEEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
+.-++|.||||+||||++++++..+++.+++.
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~ 289 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNR 289 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTCEECCG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCcEEEcc
Confidence 35588999999999999999999998765543
No 221
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.82 E-value=0.0072 Score=57.50 Aligned_cols=39 Identities=23% Similarity=0.168 Sum_probs=29.1
Q ss_pred cCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecC
Q 009640 224 GRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELT 262 (530)
Q Consensus 224 g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~ 262 (530)
|++...-++|+||||+|||+|+..+|..+ +..++.++..
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 45555668999999999999988887653 5566666544
No 222
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.81 E-value=0.005 Score=57.88 Aligned_cols=30 Identities=17% Similarity=0.088 Sum_probs=27.9
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCCcEEE
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCYDVYD 258 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~ 258 (530)
.-+.|.||+|||||++++.+|..||+++|+
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 357899999999999999999999999987
No 223
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.78 E-value=0.0045 Score=61.35 Aligned_cols=29 Identities=28% Similarity=0.273 Sum_probs=24.1
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc-CCcEE
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYL-CYDVY 257 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l-~~~i~ 257 (530)
.-++|.||||+||||+++.++..+ ++.++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 458899999999999999999974 55444
No 224
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=95.78 E-value=0.047 Score=58.61 Aligned_cols=42 Identities=5% Similarity=0.111 Sum_probs=34.9
Q ss_pred CCeEEEEEeCCCC--CCChhhhcCCceeEEEEeCCCCHHHHHHHHH
Q 009640 361 EEKIIVFTTNHRD--SVDPALIRCGRMDVHVSLGTCGPHAFKVLAK 404 (530)
Q Consensus 361 ~~~ivI~TTN~~~--~LDpALlRpGR~d~~I~~~~p~~~~r~~i~~ 404 (530)
-++-+|++|.+|. .++..+.. -+...|.|...+..+.+.++.
T Consensus 331 ~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv~s~~dsr~ilg 374 (512)
T 2ius_A 331 AGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSSKIDSRTILD 374 (512)
T ss_dssp GTEEEEEEESCCCTTTSCHHHHH--HCCEEEEECCSSHHHHHHHHS
T ss_pred CCcEEEEEecCCccccccHHHHh--hcCCeEEEEcCCHHHHHHhcC
Confidence 3677889999987 58887777 888899999999999888864
No 225
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.78 E-value=0.0045 Score=60.01 Aligned_cols=28 Identities=29% Similarity=0.190 Sum_probs=25.1
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCCcE
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCYDV 256 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~~i 256 (530)
.-+.|.||||+||||+++.+|..+++.+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~~ 50 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQNE 50 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhhc
Confidence 3578999999999999999999999764
No 226
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.76 E-value=0.0062 Score=55.82 Aligned_cols=25 Identities=16% Similarity=0.323 Sum_probs=22.3
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcC
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLC 253 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~ 253 (530)
+-+.|.||+|+|||||+++|+..+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4578999999999999999999864
No 227
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.75 E-value=0.0037 Score=63.61 Aligned_cols=35 Identities=26% Similarity=0.387 Sum_probs=30.3
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCCcEEEEecCc
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTK 263 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~ 263 (530)
+-++|.||+|+|||+|+..||..++..+++.+.-.
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~q 75 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQ 75 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSST
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccc
Confidence 35889999999999999999999998888876543
No 228
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.73 E-value=0.0054 Score=57.75 Aligned_cols=30 Identities=23% Similarity=0.274 Sum_probs=25.6
Q ss_pred CceEEEECCCCCChhHHHHHHHHHcCCcEEE
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYLCYDVYD 258 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~ 258 (530)
.++++|.||||+|||+|+.++|...+ .++.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIs 63 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIA 63 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEe
Confidence 46899999999999999999998876 4443
No 229
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=95.67 E-value=0.032 Score=51.51 Aligned_cols=17 Identities=35% Similarity=0.446 Sum_probs=14.7
Q ss_pred ceEEEECCCCCChhHHH
Q 009640 229 RGYLLYGPPGSGKSSLI 245 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa 245 (530)
+.+++.+|+|+|||..+
T Consensus 41 ~~~lv~apTGsGKT~~~ 57 (206)
T 1vec_A 41 RDILARAKNGTGKSGAY 57 (206)
T ss_dssp CCEEEECCSSSTTHHHH
T ss_pred CCEEEECCCCCchHHHH
Confidence 57999999999999643
No 230
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.65 E-value=0.006 Score=56.54 Aligned_cols=24 Identities=25% Similarity=0.319 Sum_probs=21.9
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l 252 (530)
.-+.|.||||+||||+++.|+..+
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 457899999999999999999987
No 231
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.63 E-value=0.0059 Score=55.97 Aligned_cols=25 Identities=36% Similarity=0.522 Sum_probs=22.3
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcC
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLC 253 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~ 253 (530)
.-++|.|+||+||||+++.+|..++
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999874
No 232
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.63 E-value=0.0056 Score=57.15 Aligned_cols=29 Identities=24% Similarity=0.240 Sum_probs=24.0
Q ss_pred eEEEECCCCCChhHHHHHHHHHc-CCcEEE
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYL-CYDVYD 258 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l-~~~i~~ 258 (530)
-+.|.||||+||||+++.++..+ ++.+++
T Consensus 23 ~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~ 52 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLAKNLQKHLPNCSVIS 52 (207)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSTTEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcEEEe
Confidence 46789999999999999999987 544444
No 233
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.58 E-value=0.0075 Score=60.62 Aligned_cols=33 Identities=24% Similarity=0.510 Sum_probs=28.6
Q ss_pred CceEEEECCCCCChhHHHHHHHHHcCCcEEEEe
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYLCYDVYDLE 260 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~ 260 (530)
++-+++.||+|+|||+|+..+|..++..+++.+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~D 42 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVD 42 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEecc
Confidence 456889999999999999999999987776654
No 234
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.54 E-value=0.012 Score=56.07 Aligned_cols=39 Identities=23% Similarity=0.173 Sum_probs=28.7
Q ss_pred cCCCCceEEEECCCCCChhHHHHHHHHH----cCCcEEEEecC
Q 009640 224 GRAWKRGYLLYGPPGSGKSSLIAAMANY----LCYDVYDLELT 262 (530)
Q Consensus 224 g~~~~rG~LL~GPPGTGKTsLa~AiA~~----l~~~i~~l~l~ 262 (530)
|++...-++++|+||+|||+|+..+|.. .+..++.+++.
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 4555566999999999999999877643 25666666554
No 235
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.54 E-value=0.024 Score=52.75 Aligned_cols=34 Identities=21% Similarity=0.210 Sum_probs=27.0
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecC
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELT 262 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~ 262 (530)
.-+.|.||+|+||||+++.++..+ +.+++.++..
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 347789999999999999999876 6666665433
No 236
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.54 E-value=0.0099 Score=64.03 Aligned_cols=61 Identities=18% Similarity=0.341 Sum_probs=40.6
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCC--cEEEEecCc-cC-----------------ChHHHHHHHHhc--CCCeEEEEc
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCY--DVYDLELTK-VT-----------------DNSELRALLLQT--TNRSIIVIE 286 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~--~i~~l~l~~-~~-----------------~~~~L~~l~~~~--~~~sII~ID 286 (530)
.++++.||+|+||||++++|++.+.- .++.++-.. +. ..-.+..++..+ ..|.+|++.
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iivg 340 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIVG 340 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEeC
Confidence 46999999999999999999998843 344443211 10 011244444433 579999999
Q ss_pred Ccc
Q 009640 287 DID 289 (530)
Q Consensus 287 eID 289 (530)
|+-
T Consensus 341 Eir 343 (511)
T 2oap_1 341 EVR 343 (511)
T ss_dssp CCC
T ss_pred CcC
Confidence 984
No 237
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=95.53 E-value=0.021 Score=52.92 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=20.2
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l 252 (530)
+.+++.+|+|+|||.++...+..+
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 578999999999999888777653
No 238
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.48 E-value=0.015 Score=54.47 Aligned_cols=25 Identities=44% Similarity=0.570 Sum_probs=22.0
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcC
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLC 253 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~ 253 (530)
.-+.|.||+|+|||||++.|+..+.
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3467899999999999999999885
No 239
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.48 E-value=0.0077 Score=59.60 Aligned_cols=30 Identities=33% Similarity=0.259 Sum_probs=25.8
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
.-+.|.|+||+||||+++.++ .+|+.+++.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La-~lg~~~id~ 105 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK-NLGAYIIDS 105 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence 357899999999999999999 688877665
No 240
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.47 E-value=0.0076 Score=56.63 Aligned_cols=26 Identities=27% Similarity=0.263 Sum_probs=22.9
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCC
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCY 254 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~ 254 (530)
+-+.|.||+|+||||+++.++..+..
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 45788999999999999999998753
No 241
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.46 E-value=0.01 Score=55.61 Aligned_cols=32 Identities=31% Similarity=0.433 Sum_probs=25.8
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcC----CcEEEEe
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLC----YDVYDLE 260 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~----~~i~~l~ 260 (530)
.-++|.|+||+||||+++.++..++ .+++.++
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 4578899999999999999999875 4455554
No 242
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.45 E-value=0.0071 Score=61.61 Aligned_cols=32 Identities=22% Similarity=0.292 Sum_probs=27.5
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCCcEEEEe
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCYDVYDLE 260 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~ 260 (530)
.-+++.||+|+|||+++..+|..++..+++.+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~D 39 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGD 39 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECC
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccc
Confidence 46789999999999999999999987666554
No 243
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.45 E-value=0.0098 Score=55.35 Aligned_cols=27 Identities=30% Similarity=0.487 Sum_probs=23.3
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCCc
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCYD 255 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~~ 255 (530)
|.++|.||+|+|||||++++.....-.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~ 28 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDS 28 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCC
Confidence 568999999999999999998876443
No 244
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=95.44 E-value=0.011 Score=47.13 Aligned_cols=46 Identities=7% Similarity=0.001 Sum_probs=36.8
Q ss_pred CHHHHHHHHHHhhCCcCccchHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 009640 395 GPHAFKVLAKNYLGIESHHALFDVVESCIRAGGALTPAQIGEVLLRN 441 (530)
Q Consensus 395 ~~~~r~~i~~~~l~~~~~~~~~~~i~~l~~~~~~~spadi~~~l~~~ 441 (530)
|.++|..||+.++...... ....++.++..+.|||+|||.++|..+
T Consensus 2 d~~~R~~Il~~~l~~~~~~-~~vdl~~la~~t~G~SGADi~~l~~eA 47 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLS-EEVDLEDYVARPDKISGADINSICQES 47 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBC-TTCCTHHHHTSSCCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 6789999999999865543 222377888889999999999999754
No 245
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.43 E-value=0.0077 Score=55.74 Aligned_cols=25 Identities=32% Similarity=0.658 Sum_probs=21.9
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcC
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLC 253 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~ 253 (530)
.-+.|.||+|+|||||++.|+..+.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3477899999999999999999864
No 246
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=95.43 E-value=0.049 Score=54.51 Aligned_cols=58 Identities=16% Similarity=0.032 Sum_probs=33.2
Q ss_pred CCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCC----CCceEEEECCCCCChhHHHHHHHHH
Q 009640 191 STFETLALEPQLKKQITEDLTAFANGKEFYHRVGRA----WKRGYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 191 ~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~----~~rG~LL~GPPGTGKTsLa~AiA~~ 251 (530)
.+|+++...+.+.+.+.+. -...+..++...++ ..+.+++.+|+|+|||..+...+-.
T Consensus 6 ~~f~~~~l~~~~~~~l~~~---g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~ 67 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNK---GFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIE 67 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHH---TCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHH
T ss_pred CchhhcCCCHHHHHHHHHc---CCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHH
Confidence 4577777777665554431 11222222222211 1257999999999999876554443
No 247
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.41 E-value=0.0089 Score=57.30 Aligned_cols=29 Identities=38% Similarity=0.551 Sum_probs=24.3
Q ss_pred eEEEECCCCCChhHHHHHHHHHcC--CcEEE
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLC--YDVYD 258 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~--~~i~~ 258 (530)
-+.|.||||+||||+++.++..++ .+++.
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~ 58 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYHRLVKDYDVIM 58 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTTTSCEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhcCCCcee
Confidence 367889999999999999999996 45543
No 248
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.36 E-value=0.016 Score=58.06 Aligned_cols=53 Identities=17% Similarity=0.254 Sum_probs=35.4
Q ss_pred hhhhHHHHHHHHHHHcChhhHhhhc--CCCCceEEEECCCCCChhHHHHHHHHHc
Q 009640 200 PQLKKQITEDLTAFANGKEFYHRVG--RAWKRGYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 200 ~~~k~~i~~~l~~~l~~~~~y~~~g--~~~~rG~LL~GPPGTGKTsLa~AiA~~l 252 (530)
+.+++.+.+.+...+........+. ...+.-+.|.||+|+||||+++.||..+
T Consensus 70 ~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 70 SEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp HHHHHHHHHHHHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4566777777777775432101122 2233457899999999999999999987
No 249
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.28 E-value=0.05 Score=47.50 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=20.0
Q ss_pred eEEEECCCCCChhHHHHHHHHH
Q 009640 230 GYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~ 251 (530)
-+++.|+||+|||||+.++.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 250
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.22 E-value=0.023 Score=59.77 Aligned_cols=60 Identities=18% Similarity=0.215 Sum_probs=38.8
Q ss_pred hhhhHHHHHHHHHHHcChh-hHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEe
Q 009640 200 PQLKKQITEDLTAFANGKE-FYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLE 260 (530)
Q Consensus 200 ~~~k~~i~~~l~~~l~~~~-~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~ 260 (530)
+.+.+.+.+.+...+.... .+... ...++-+++.||||+||||++..+|..+ +..+.-+.
T Consensus 69 ~~v~~~v~~eL~~~L~~~~~~~~~~-~~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~ 132 (433)
T 3kl4_A 69 EWFISIVYDELSKLFGGDKEPNVNP-TKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVA 132 (433)
T ss_dssp HHHHHHHHHHHHHHHCSSSCCCCSC-CSSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHHHhcCccccccccc-cCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3456666677777665421 11111 1124568889999999999999999877 55555444
No 251
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=95.21 E-value=0.064 Score=51.16 Aligned_cols=54 Identities=13% Similarity=0.031 Sum_probs=29.5
Q ss_pred CCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcC---CCCceEEEECCCCCChhHHH
Q 009640 189 HPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGR---AWKRGYLLYGPPGSGKSSLI 245 (530)
Q Consensus 189 ~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~---~~~rG~LL~GPPGTGKTsLa 245 (530)
+..+|+++...+.+.+.+.+. -...+..++..-+ ...+.+++.+|+|+|||...
T Consensus 27 ~~~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 27 PVLNFYEANFPANVMDVIARQ---NFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSY 83 (242)
T ss_dssp CCSSTTTTTCCHHHHHHHHTT---TCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHH
T ss_pred ccCCHhhcCCCHHHHHHHHHC---CCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHH
Confidence 345677777666655444320 1111222222111 01357999999999999763
No 252
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.20 E-value=0.011 Score=59.94 Aligned_cols=62 Identities=18% Similarity=0.341 Sum_probs=40.6
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCCc--EEEEecCc------cC--------ChHHHHHHHHhc--CCCeEEEEcCccc
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCYD--VYDLELTK------VT--------DNSELRALLLQT--TNRSIIVIEDIDC 290 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~~--i~~l~l~~------~~--------~~~~L~~l~~~~--~~~sII~IDeID~ 290 (530)
..+++.||+|+|||||+++|+..+..+ .+.++-.. .. .....+..+..+ ..|.+|++||.-.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~~ 251 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELRS 251 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCCh
Confidence 468999999999999999999987432 33332110 00 112233344443 6899999999864
No 253
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.17 E-value=0.012 Score=54.21 Aligned_cols=25 Identities=32% Similarity=0.557 Sum_probs=22.0
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcC
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLC 253 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~ 253 (530)
+-+.|.||+|+|||||++.|+..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3478899999999999999998874
No 254
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.16 E-value=0.035 Score=62.83 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=18.9
Q ss_pred ceEEEECCCCCChhHHHHHHHHH
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~ 251 (530)
..+++.||+|+|||+++..++..
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999987777544
No 255
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.15 E-value=0.025 Score=59.58 Aligned_cols=60 Identities=27% Similarity=0.331 Sum_probs=39.8
Q ss_pred hhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEe
Q 009640 200 PQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLE 260 (530)
Q Consensus 200 ~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~ 260 (530)
+.+++.+.+.+...+..+....... ..+.-+++.||||+||||++..+|..+ |..+.-+.
T Consensus 73 ~~v~~~l~~eL~~~L~~~~~~~~~~-~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~ 135 (443)
T 3dm5_A 73 EHIIKIVYEELTKFLGTEAKPIEIK-EKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVC 135 (443)
T ss_dssp HHHHHHHHHHHHHHTTSSCCCCCCC-SSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred HHHHHHHHHHHHHHhcCcccccccC-CCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4566677777777765422111111 124568899999999999999999877 55555444
No 256
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.13 E-value=0.0047 Score=57.66 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=22.3
Q ss_pred EEEECCCCCChhHHHHHHHHHcCCc
Q 009640 231 YLLYGPPGSGKSSLIAAMANYLCYD 255 (530)
Q Consensus 231 ~LL~GPPGTGKTsLa~AiA~~l~~~ 255 (530)
+.|.||||+||||+++.++..++..
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 6789999999999999999998643
No 257
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.12 E-value=0.011 Score=56.97 Aligned_cols=30 Identities=20% Similarity=0.348 Sum_probs=25.9
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
-+=|.||||+||||+++.||..+++..++.
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 355789999999999999999999887654
No 258
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.11 E-value=0.029 Score=58.46 Aligned_cols=28 Identities=29% Similarity=0.222 Sum_probs=23.0
Q ss_pred cCCCCceEEEECCCCCChhHHHHHHHHH
Q 009640 224 GRAWKRGYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 224 g~~~~rG~LL~GPPGTGKTsLa~AiA~~ 251 (530)
|++...-++|+||||+|||+|+..+|..
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 5555666899999999999999977643
No 259
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.11 E-value=0.011 Score=55.01 Aligned_cols=26 Identities=35% Similarity=0.562 Sum_probs=22.4
Q ss_pred CceEEEECCCCCChhHHHHHHHHHcC
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYLC 253 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l~ 253 (530)
.+-+.|.||+|+|||||++.|+..+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 35688999999999999999998764
No 260
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=95.06 E-value=0.067 Score=61.99 Aligned_cols=55 Identities=18% Similarity=0.204 Sum_probs=36.1
Q ss_pred cCChhhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHH------cCCcEEEEecCc
Q 009640 197 ALEPQLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANY------LCYDVYDLELTK 263 (530)
Q Consensus 197 ~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~------l~~~i~~l~l~~ 263 (530)
+|-+...+.|.+.+.. .. ..+-+.++||+|.|||+||+++++. +...++-++++.
T Consensus 131 VGRe~eLeeL~elL~~---~d---------~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~ 191 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLE---LR---------PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191 (1221)
T ss_dssp CCCHHHHHHHHHHHHH---CC---------SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCC
T ss_pred CCcHHHHHHHHHHHhc---cC---------CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCC
Confidence 5666666666665532 01 1356889999999999999999863 233345555443
No 261
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.06 E-value=0.011 Score=55.22 Aligned_cols=24 Identities=33% Similarity=0.332 Sum_probs=22.1
Q ss_pred eEEEECCCCCChhHHHHHHHHHcC
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLC 253 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~ 253 (530)
-+.|.||+|+|||||++.|+..++
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999987
No 262
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.06 E-value=0.014 Score=58.52 Aligned_cols=30 Identities=33% Similarity=0.566 Sum_probs=25.6
Q ss_pred cCCCCceEEEECCCCCChhHHHHHHHHHcC
Q 009640 224 GRAWKRGYLLYGPPGSGKSSLIAAMANYLC 253 (530)
Q Consensus 224 g~~~~rG~LL~GPPGTGKTsLa~AiA~~l~ 253 (530)
.++...-+.|.||+|+|||||++.|+..+.
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~ 151 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFLG 151 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHHT
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhcC
Confidence 345556689999999999999999999983
No 263
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.05 E-value=0.021 Score=58.58 Aligned_cols=53 Identities=17% Similarity=0.254 Sum_probs=35.7
Q ss_pred hhhhHHHHHHHHHHHcChhhHhhhc--CCCCceEEEECCCCCChhHHHHHHHHHc
Q 009640 200 PQLKKQITEDLTAFANGKEFYHRVG--RAWKRGYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 200 ~~~k~~i~~~l~~~l~~~~~y~~~g--~~~~rG~LL~GPPGTGKTsLa~AiA~~l 252 (530)
+.+++.+.+.+...+........+. ...+.-+.|.||.|+||||+++.||..+
T Consensus 127 ~~~~~~l~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 127 SEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp HHHHHHHHHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4566677777777775432111222 2333458899999999999999999987
No 264
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.01 E-value=0.012 Score=59.35 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=27.0
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCCcEEEEe
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCYDVYDLE 260 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~ 260 (530)
+-+++.||+|+|||+|+.++|..++..+++.+
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~D 35 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGD 35 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECC
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecC
Confidence 35788999999999999999999987665554
No 265
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.01 E-value=0.045 Score=62.85 Aligned_cols=64 Identities=19% Similarity=0.371 Sum_probs=39.6
Q ss_pred CceEEEECCCCCChhHHHHHHHHHc-----CC----cEEEEec-----CccC--------------ChHHHHHHHHhcCC
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYL-----CY----DVYDLEL-----TKVT--------------DNSELRALLLQTTN 279 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l-----~~----~i~~l~l-----~~~~--------------~~~~L~~l~~~~~~ 279 (530)
..-++|.||.|+||||+++.+|... +. .-..+.. ..+. ...++..++..+..
T Consensus 673 g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~a~~ 752 (918)
T 3thx_B 673 ERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKATS 752 (918)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHHHHHHCCT
T ss_pred CeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHhccC
Confidence 3558999999999999999987432 21 1111110 0010 01223444555789
Q ss_pred CeEEEEcCccch
Q 009640 280 RSIIVIEDIDCS 291 (530)
Q Consensus 280 ~sII~IDeID~~ 291 (530)
|++|++||.-.-
T Consensus 753 p~LlLLDEP~~G 764 (918)
T 3thx_B 753 QSLVILDELGRG 764 (918)
T ss_dssp TCEEEEESTTTT
T ss_pred CCEEEEeCCCCC
Confidence 999999999764
No 266
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=94.99 E-value=0.012 Score=56.27 Aligned_cols=30 Identities=23% Similarity=0.150 Sum_probs=27.6
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCCcEEE
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCYDVYD 258 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~ 258 (530)
.-+.+.|++|||||++++.+|..+|+++|+
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 357889999999999999999999999887
No 267
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.97 E-value=0.021 Score=57.29 Aligned_cols=58 Identities=16% Similarity=0.075 Sum_probs=37.6
Q ss_pred hhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEe
Q 009640 202 LKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLE 260 (530)
Q Consensus 202 ~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~ 260 (530)
+++.+.+.+...+.....+ .+....+.-+++.||+|+||||++..+|..+ +..+.-+.
T Consensus 79 ~~~~~~~~l~~~l~~~~~~-~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~ 139 (306)
T 1vma_A 79 ALESLKEIILEILNFDTKL-NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA 139 (306)
T ss_dssp HHHHHHHHHHHHTCSCCCC-CCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHHhCCCCCC-cccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc
Confidence 5666777777766543211 1112234458899999999999999999876 44444443
No 268
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=94.91 E-value=0.071 Score=49.90 Aligned_cols=52 Identities=12% Similarity=0.078 Sum_probs=28.3
Q ss_pred CCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCC---CCceEEEECCCCCChhHHH
Q 009640 191 STFETLALEPQLKKQITEDLTAFANGKEFYHRVGRA---WKRGYLLYGPPGSGKSSLI 245 (530)
Q Consensus 191 ~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~---~~rG~LL~GPPGTGKTsLa 245 (530)
.+|+++...+.+.+.+.+. -...+..++...++ -.+.+++.+|+|+|||...
T Consensus 4 ~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~ 58 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKTL---RFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAY 58 (219)
T ss_dssp CCGGGSCCCHHHHHHHHHT---TCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHH
T ss_pred CCHhhCCCCHHHHHHHHHC---CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHH
Confidence 3577777666655544320 01112222221111 1257899999999999853
No 269
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.91 E-value=0.014 Score=57.64 Aligned_cols=38 Identities=21% Similarity=0.092 Sum_probs=28.5
Q ss_pred cCCCCceEEEECCCCCChhHHHHHHHHHc----CCcEEEEec
Q 009640 224 GRAWKRGYLLYGPPGSGKSSLIAAMANYL----CYDVYDLEL 261 (530)
Q Consensus 224 g~~~~rG~LL~GPPGTGKTsLa~AiA~~l----~~~i~~l~l 261 (530)
|++...-++|.||||+|||+|+..||..+ |..+..++.
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 34444568899999999999999999876 445555544
No 270
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.90 E-value=0.017 Score=63.56 Aligned_cols=32 Identities=31% Similarity=0.527 Sum_probs=29.2
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc---CCcEEEEe
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLE 260 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~ 260 (530)
.-++|.|+||+||||+++++|..+ |++++.++
T Consensus 53 ~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lD 87 (630)
T 1x6v_B 53 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 87 (630)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEES
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 347899999999999999999999 99999885
No 271
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=94.85 E-value=0.072 Score=50.35 Aligned_cols=53 Identities=15% Similarity=0.206 Sum_probs=30.2
Q ss_pred CCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCC---CCceEEEECCCCCChhHH
Q 009640 189 HPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRA---WKRGYLLYGPPGSGKSSL 244 (530)
Q Consensus 189 ~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~---~~rG~LL~GPPGTGKTsL 244 (530)
+..+|+++...+.+.+.+.+. -...+..|+...++ ..+.+++.+|+|+|||..
T Consensus 22 ~~~~f~~l~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~ 77 (230)
T 2oxc_A 22 EPADFESLLLSRPVLEGLRAA---GFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCV 77 (230)
T ss_dssp --CCGGGGTCCHHHHHHHHHT---TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHH
T ss_pred CCCCHhhcCCCHHHHHHHHHC---CCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHH
Confidence 445788887777766555431 11122223221111 135799999999999976
No 272
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=94.82 E-value=0.08 Score=60.00 Aligned_cols=62 Identities=21% Similarity=0.333 Sum_probs=38.9
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc-----CCcE----EEE----------ecCc-c----C----ChHHHHHHHHhcCCC
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYL-----CYDV----YDL----------ELTK-V----T----DNSELRALLLQTTNR 280 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l-----~~~i----~~l----------~l~~-~----~----~~~~L~~l~~~~~~~ 280 (530)
+-++|.||.|+||||+++.||... |..+ ..+ ...+ + . ....+..++..+..|
T Consensus 608 ~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~vpa~~~~i~~~~~i~~~~~~~d~l~~~~stf~~e~~~~~~il~~a~~p 687 (800)
T 1wb9_A 608 RMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEY 687 (800)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCEEEEEEC-----------CHHHHHHHHHHHHHCCTT
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHhcCcccchhcccceeHHHHHhhCCHHHHHHhhhhhhhHHHHHHHHHHHhccCC
Confidence 458899999999999999998752 2111 111 1000 0 0 011234455667899
Q ss_pred eEEEEcCccc
Q 009640 281 SIIVIEDIDC 290 (530)
Q Consensus 281 sII~IDeID~ 290 (530)
++|++||.-.
T Consensus 688 sLlLLDEp~~ 697 (800)
T 1wb9_A 688 SLVLMDEIGR 697 (800)
T ss_dssp EEEEEESCCC
T ss_pred CEEEEECCCC
Confidence 9999999954
No 273
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=94.81 E-value=0.077 Score=50.19 Aligned_cols=54 Identities=17% Similarity=0.100 Sum_probs=31.0
Q ss_pred CCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCC---CCceEEEECCCCCChhHHH
Q 009640 189 HPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRA---WKRGYLLYGPPGSGKSSLI 245 (530)
Q Consensus 189 ~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~---~~rG~LL~GPPGTGKTsLa 245 (530)
...+|+++...+.+.+.+.+. -...+..++...++ ..+.+++.+|+|+|||...
T Consensus 23 ~~~~f~~~~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 23 EITRFSDFPLSKKTLKGLQEA---QYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAF 79 (236)
T ss_dssp GCSBGGGSCCCHHHHHHHHHT---TCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHH
T ss_pred ccCCHhhcCCCHHHHHHHHHC---CCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHH
Confidence 445688887777766555431 11122222221111 1357999999999999853
No 274
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.81 E-value=0.024 Score=60.47 Aligned_cols=24 Identities=29% Similarity=0.409 Sum_probs=21.6
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l 252 (530)
.-++|.||+|+|||||++.||..+
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHHHHh
Confidence 347899999999999999999877
No 275
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.80 E-value=0.021 Score=51.50 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=21.6
Q ss_pred eEEEECCCCCChhHHHHHHHHHc
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l 252 (530)
-+.|.||.|+|||||+++|+..+
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 47899999999999999999988
No 276
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.76 E-value=0.02 Score=53.70 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=22.3
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcC
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLC 253 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~ 253 (530)
+-+.|.||+|+|||||+++|+....
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4578899999999999999998865
No 277
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.75 E-value=0.033 Score=49.03 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=20.7
Q ss_pred eEEEECCCCCChhHHHHHHHHHc
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l 252 (530)
-+++.|+||+|||||+.++.+.-
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 278
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=94.73 E-value=0.18 Score=50.93 Aligned_cols=56 Identities=18% Similarity=0.179 Sum_probs=32.1
Q ss_pred CCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCC---CCceEEEECCCCCChhHHHHHH
Q 009640 190 PSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRA---WKRGYLLYGPPGSGKSSLIAAM 248 (530)
Q Consensus 190 ~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~---~~rG~LL~GPPGTGKTsLa~Ai 248 (530)
..+|+++...+.+.+.+.+. -...+..|+...++ ..+.+++.+|+|+|||..+...
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~ 65 (391)
T 1xti_A 7 SSGFRDFLLKPELLRAIVDC---GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLA 65 (391)
T ss_dssp --CGGGGCCCHHHHHHHHHH---SCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHH
T ss_pred CCChhhcCCCHHHHHHHHHC---CCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHH
Confidence 34688887777766555431 11223333332211 1367999999999999865433
No 279
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.69 E-value=0.019 Score=54.41 Aligned_cols=24 Identities=33% Similarity=0.618 Sum_probs=21.8
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l 252 (530)
.-+.|.||+|+|||||++.|+..+
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 447899999999999999999977
No 280
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=94.67 E-value=0.24 Score=49.89 Aligned_cols=53 Identities=21% Similarity=0.257 Sum_probs=30.2
Q ss_pred CCcccccCChhhhHHHHHHHHHHHcChhhHhhhcC-----CCCceEEEECCCCCChhHHHH
Q 009640 191 STFETLALEPQLKKQITEDLTAFANGKEFYHRVGR-----AWKRGYLLYGPPGSGKSSLIA 246 (530)
Q Consensus 191 ~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~-----~~~rG~LL~GPPGTGKTsLa~ 246 (530)
.+|+++...+.+.+.+.+. -...+..++...+ ..++.+++.+|+|+|||..+.
T Consensus 5 ~~f~~~~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~ 62 (395)
T 3pey_A 5 KSFDELGLAPELLKGIYAM---KFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFS 62 (395)
T ss_dssp CSSTTSCCCHHHHHHHHHT---TCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHH
T ss_pred cCHhhCCCCHHHHHHHHHC---CCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHH
Confidence 4677777777665555431 1112222222111 123689999999999998654
No 281
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.56 E-value=0.022 Score=53.24 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=22.2
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcC
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLC 253 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~ 253 (530)
.-+.|.||+|+|||||+++|+..+.
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3477999999999999999999884
No 282
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.56 E-value=0.034 Score=51.39 Aligned_cols=33 Identities=24% Similarity=0.277 Sum_probs=28.1
Q ss_pred EEEECCCCCChhHHHHHHHHHcCCcEEEEecCcc
Q 009640 231 YLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKV 264 (530)
Q Consensus 231 ~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~ 264 (530)
+|++|++|+|||++|..+|.. +.+++.+.....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~~ 34 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQI 34 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCCC
Confidence 689999999999999999988 878877766543
No 283
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=94.53 E-value=0.018 Score=63.50 Aligned_cols=34 Identities=29% Similarity=0.322 Sum_probs=24.7
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc----CCcEEEEecC
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYL----CYDVYDLELT 262 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l----~~~i~~l~l~ 262 (530)
.-+|+.||||||||+++..++..+ +..+..+..+
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~t 233 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPS 233 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESS
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence 357899999999999988887765 3345444433
No 284
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.49 E-value=0.018 Score=52.92 Aligned_cols=24 Identities=38% Similarity=0.486 Sum_probs=21.8
Q ss_pred CceEEEECCCCCChhHHHHHHHHH
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~ 251 (530)
.+|+||.||+|+|||+++.++...
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 479999999999999999999874
No 285
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=94.48 E-value=0.081 Score=60.87 Aligned_cols=63 Identities=22% Similarity=0.323 Sum_probs=39.1
Q ss_pred ceEEEECCCCCChhHHHHHHHHH-----cCCcE----EEEec-----CccC--------------ChHHHHHHHHhcCCC
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANY-----LCYDV----YDLEL-----TKVT--------------DNSELRALLLQTTNR 280 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~-----l~~~i----~~l~l-----~~~~--------------~~~~L~~l~~~~~~~ 280 (530)
+-++|.||.|+||||+++.+|.- .|..+ ..+.. +.+. ....+..++..+..|
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~d~i~~~ig~~d~l~~~lStf~~e~~~~a~il~~a~~~ 742 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKD 742 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECCSEEEEECC---------CHHHHHHHHHHHHHHHCCTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHhcCchhhHHHhHhhhHHHHHHHHHHHHhccCC
Confidence 45889999999999999998532 23211 11110 1111 012244455567899
Q ss_pred eEEEEcCccch
Q 009640 281 SIIVIEDIDCS 291 (530)
Q Consensus 281 sII~IDeID~~ 291 (530)
++|++||+-.-
T Consensus 743 sLlLLDEp~~G 753 (934)
T 3thx_A 743 SLIIIDELGRG 753 (934)
T ss_dssp CEEEEESCSCS
T ss_pred cEEEEeCCCCC
Confidence 99999999753
No 286
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=94.44 E-value=0.17 Score=51.51 Aligned_cols=56 Identities=21% Similarity=0.172 Sum_probs=31.1
Q ss_pred CCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCC---CCceEEEECCCCCChhHHHH
Q 009640 188 RHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRA---WKRGYLLYGPPGSGKSSLIA 246 (530)
Q Consensus 188 ~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~---~~rG~LL~GPPGTGKTsLa~ 246 (530)
.+..+|+++...+.+.+.+.+. -...+..|+...++ -.+.+++.+|+|+|||..+.
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~ 76 (400)
T 1s2m_A 18 TKGNTFEDFYLKRELLMGIFEA---GFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFV 76 (400)
T ss_dssp ---CCGGGGCCCHHHHHHHHHT---TCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHH
T ss_pred cccCChhhcCCCHHHHHHHHHC---CCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHH
Confidence 3456788888777766655431 11112222221111 13569999999999997543
No 287
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.41 E-value=0.019 Score=59.79 Aligned_cols=31 Identities=26% Similarity=0.350 Sum_probs=26.9
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
.-+++.||+|+|||+|+..+|..++..+++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~ 33 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINS 33 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEEC
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeec
Confidence 4578899999999999999999998776654
No 288
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.40 E-value=0.065 Score=53.76 Aligned_cols=39 Identities=21% Similarity=0.149 Sum_probs=29.3
Q ss_pred cCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecC
Q 009640 224 GRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELT 262 (530)
Q Consensus 224 g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~ 262 (530)
|++...-++|.|+||+|||+|+..+|... +.++..+++.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 45555669999999999999999998664 3455555544
No 289
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.36 E-value=0.021 Score=54.16 Aligned_cols=30 Identities=33% Similarity=0.281 Sum_probs=24.4
Q ss_pred eEEEECCCCCChhHHHHHHHHHcC---CcEEEE
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLC---YDVYDL 259 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~---~~i~~l 259 (530)
-+.|.||+|+||||+++.++..+. ++++..
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 366789999999999999999884 555544
No 290
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.34 E-value=0.026 Score=53.74 Aligned_cols=28 Identities=39% Similarity=0.488 Sum_probs=23.4
Q ss_pred CCCceEEEECCCCCChhHHHHHHHHHcC
Q 009640 226 AWKRGYLLYGPPGSGKSSLIAAMANYLC 253 (530)
Q Consensus 226 ~~~rG~LL~GPPGTGKTsLa~AiA~~l~ 253 (530)
+...-+.|.||+|+|||||+++|+..+.
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 3345578999999999999999999875
No 291
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.32 E-value=0.029 Score=54.88 Aligned_cols=24 Identities=50% Similarity=0.790 Sum_probs=21.5
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l 252 (530)
.-++|.||+|+||||++++|+..+
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHhC
Confidence 347899999999999999999876
No 292
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.31 E-value=0.096 Score=45.83 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=19.1
Q ss_pred EEEECCCCCChhHHHHHHHHH
Q 009640 231 YLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 231 ~LL~GPPGTGKTsLa~AiA~~ 251 (530)
+++.|+||+|||+|+.++.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999999764
No 293
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.29 E-value=0.027 Score=51.66 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=22.2
Q ss_pred CceEEEECCCCCChhHHHHHHHHHc
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l 252 (530)
..-+.|.||+|+|||||+.+++..+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 4568899999999999999999875
No 294
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.24 E-value=0.058 Score=54.62 Aligned_cols=53 Identities=21% Similarity=0.270 Sum_probs=33.9
Q ss_pred hhhhHHHHHHHHHHHcChhh--H-h-hhcCCCCceEEEECCCCCChhHHHHHHHHHc
Q 009640 200 PQLKKQITEDLTAFANGKEF--Y-H-RVGRAWKRGYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 200 ~~~k~~i~~~l~~~l~~~~~--y-~-~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l 252 (530)
+.+++.+.+.+...+..... + . ....+.+.-+.|.||+|+||||+++.||..+
T Consensus 97 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 97 KIIEEAVKEAVSEILETSRRIDLIEEIRKAEKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp HHHHHHHHHHHHHHSCCSSCCCHHHHHHSSCSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCccccchhhhcccCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34555566666666653320 0 0 0112234457899999999999999999987
No 295
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.23 E-value=0.027 Score=58.10 Aligned_cols=26 Identities=46% Similarity=0.689 Sum_probs=22.5
Q ss_pred CceEEEECCCCCChhHHHHHHHHHcC
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYLC 253 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l~ 253 (530)
..-+++.||+|+||||++++|++.+.
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 34588999999999999999998763
No 296
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.20 E-value=0.075 Score=47.68 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.5
Q ss_pred eEEEECCCCCChhHHHHHHHHHc
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l 252 (530)
-+++.|+||+|||||+.++.+.-
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998643
No 297
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.20 E-value=0.039 Score=55.65 Aligned_cols=59 Identities=27% Similarity=0.428 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHHcChhhH---hhhc--CCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEe
Q 009640 202 LKKQITEDLTAFANGKEFY---HRVG--RAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLE 260 (530)
Q Consensus 202 ~k~~i~~~l~~~l~~~~~y---~~~g--~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~ 260 (530)
+++.+.+.+...+.....- ..+. ...++-+++.||+|+||||++..||..+ +..+.-+.
T Consensus 74 ~~~~~~~~l~~~l~~~~~~~~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid 140 (320)
T 1zu4_A 74 IKDALVESLYQAYTDNDWTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAA 140 (320)
T ss_dssp HHHHHHHHHHHHHHCSCC----CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHHhCcccccccccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 5556666666666433200 1122 2334568899999999999999999876 44554443
No 298
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=94.12 E-value=0.61 Score=46.12 Aligned_cols=54 Identities=20% Similarity=0.212 Sum_probs=32.0
Q ss_pred CCCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhc-----CCCCceEEEECCCCCChhHH
Q 009640 188 RHPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVG-----RAWKRGYLLYGPPGSGKSSL 244 (530)
Q Consensus 188 ~~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g-----~~~~rG~LL~GPPGTGKTsL 244 (530)
....+|+++...+.+.+.+... -...+..++..- ...++.+++.+|+|||||..
T Consensus 89 ~~~~~f~~l~l~~~l~~~l~~~---g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a 147 (300)
T 3fmo_B 89 YSVKSFEELRLKPQLLQGVYAM---GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAA 147 (300)
T ss_dssp CCCCCSGGGTCCHHHHHHHHHT---TCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHH
T ss_pred CCcCCHhhcCCCHHHHHHHHHc---CCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHH
Confidence 3456899998887766655431 111221122111 11236899999999999975
No 299
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.12 E-value=0.073 Score=55.74 Aligned_cols=31 Identities=35% Similarity=0.445 Sum_probs=24.9
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCC---cEEEEe
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCY---DVYDLE 260 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~---~i~~l~ 260 (530)
-+++.||+|+||||++++|++.+.. +++.++
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~e 202 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQELNSSERNILTVE 202 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEec
Confidence 3789999999999999999998843 455443
No 300
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.07 E-value=0.058 Score=46.96 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.4
Q ss_pred eEEEECCCCCChhHHHHHHHHHc
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l 252 (530)
-+++.|++|+|||||+.++++..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 57999999999999999998653
No 301
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.06 E-value=0.055 Score=57.39 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=20.3
Q ss_pred eEEEECCCCCChhHHHHHHHHHc
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l 252 (530)
-.+|+||||+|||+|+..++...
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhh
Confidence 37899999999999999988764
No 302
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.06 E-value=0.12 Score=46.63 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=20.7
Q ss_pred ceEEEECCCCCChhHHHHHHHHH
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~ 251 (530)
--+++.|+||+|||+|+.++.+.
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999875
No 303
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.05 E-value=0.14 Score=46.69 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.4
Q ss_pred ceEEEECCCCCChhHHHHHHHHH
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~ 251 (530)
.-++|.|++|+|||+|+.++.+.
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999864
No 304
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.04 E-value=0.069 Score=47.65 Aligned_cols=23 Identities=35% Similarity=0.509 Sum_probs=20.5
Q ss_pred ceEEEECCCCCChhHHHHHHHHH
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~ 251 (530)
.-+++.|+||+|||+|+.++.+.
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 305
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.04 E-value=0.06 Score=48.81 Aligned_cols=24 Identities=38% Similarity=0.475 Sum_probs=21.0
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l 252 (530)
.-+++.|++|+|||+|+.++.+.-
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 368999999999999999998743
No 306
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.02 E-value=0.037 Score=59.64 Aligned_cols=32 Identities=19% Similarity=0.321 Sum_probs=25.8
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc---CCcEEEEe
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLE 260 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~ 260 (530)
.-++|.|+||+||||+++.+|.++ +.+...++
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s 70 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFN 70 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEec
Confidence 468899999999999999999998 44444443
No 307
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.00 E-value=0.07 Score=46.59 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.5
Q ss_pred ceEEEECCCCCChhHHHHHHHHH
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~ 251 (530)
.-+++.|++|+|||+|+.++.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999864
No 308
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.98 E-value=0.07 Score=57.22 Aligned_cols=59 Identities=14% Similarity=0.195 Sum_probs=37.8
Q ss_pred hhhHHHHHHHHHHHcChhhHhhhcC--CCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEec
Q 009640 201 QLKKQITEDLTAFANGKEFYHRVGR--AWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLEL 261 (530)
Q Consensus 201 ~~k~~i~~~l~~~l~~~~~y~~~g~--~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l 261 (530)
.+.+.+.+.+...+..... .+.. ..++-+++.|+||+||||++.++|..+ |..+.-++.
T Consensus 74 ~~~~~v~~eL~~ll~~~~~--~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 74 MIQHAVFKELVKLVDPGVK--AWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp HHHHHHHHHHHHHHCCCCC--CCCCCSS--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHHHHhccccc--hhccccCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 3555566666666653211 1111 224568899999999999999999877 666655554
No 309
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.95 E-value=0.049 Score=49.45 Aligned_cols=26 Identities=27% Similarity=0.553 Sum_probs=22.3
Q ss_pred CCceEEEECCCCCChhHHHHHHHHHc
Q 009640 227 WKRGYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 227 ~~rG~LL~GPPGTGKTsLa~AiA~~l 252 (530)
...-+++.|++|+|||||+.++++.-
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999998753
No 310
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=93.94 E-value=0.2 Score=46.90 Aligned_cols=17 Identities=18% Similarity=0.317 Sum_probs=14.6
Q ss_pred ceEEEECCCCCChhHHH
Q 009640 229 RGYLLYGPPGSGKSSLI 245 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa 245 (530)
+.+++.+|+|+|||...
T Consensus 58 ~~~l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 58 IDLIVVAQTGTGKTLSY 74 (228)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCChHHHHH
Confidence 57899999999999743
No 311
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.93 E-value=0.035 Score=53.35 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=22.5
Q ss_pred EEEECCCCCChhHHHHHHHHHcCCc
Q 009640 231 YLLYGPPGSGKSSLIAAMANYLCYD 255 (530)
Q Consensus 231 ~LL~GPPGTGKTsLa~AiA~~l~~~ 255 (530)
+-|.||+|+||||+++.|+..+|..
T Consensus 28 igI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 28 IGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEECCCCCCHHHHHHHHHHHhchh
Confidence 6689999999999999999988754
No 312
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.91 E-value=0.08 Score=46.92 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.2
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l 252 (530)
.-+++.|++|+|||||+.++.+.-
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999998643
No 313
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.90 E-value=0.043 Score=54.55 Aligned_cols=26 Identities=35% Similarity=0.312 Sum_probs=22.6
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCC
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCY 254 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~ 254 (530)
.-+.+.||+|+|||||++.|+..++.
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 34678999999999999999998853
No 314
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.89 E-value=0.031 Score=50.71 Aligned_cols=24 Identities=33% Similarity=0.288 Sum_probs=21.5
Q ss_pred eEEEECCCCCChhHHHHHHHHHcC
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLC 253 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~ 253 (530)
-.+|+||.|+|||+++.||+..++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 357899999999999999998875
No 315
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=93.82 E-value=0.16 Score=48.86 Aligned_cols=52 Identities=17% Similarity=0.091 Sum_probs=29.4
Q ss_pred CCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCC---CCceEEEECCCCCChhHHH
Q 009640 191 STFETLALEPQLKKQITEDLTAFANGKEFYHRVGRA---WKRGYLLYGPPGSGKSSLI 245 (530)
Q Consensus 191 ~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~---~~rG~LL~GPPGTGKTsLa 245 (530)
.+|+++...+.+.+.+.+. -...+..|+...++ ..+.+++.+|+|+|||...
T Consensus 43 ~~f~~l~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 43 KTFKDLGVTDVLCEACDQL---GWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAF 97 (249)
T ss_dssp CCTGGGTCCHHHHHHHHHT---TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHH
T ss_pred CCHHHcCCCHHHHHHHHHc---CCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHh
Confidence 4688887777655544321 01122222221111 1367999999999999853
No 316
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.73 E-value=0.06 Score=49.21 Aligned_cols=32 Identities=19% Similarity=0.235 Sum_probs=26.0
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc---CCcEEEEe
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLE 260 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~ 260 (530)
+-+.+.|++|+||||++..++..+ ++.+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 457899999999999999999876 45555554
No 317
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.72 E-value=0.091 Score=46.92 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.6
Q ss_pred ceEEEECCCCCChhHHHHHHHHH
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~ 251 (530)
.-+++.|++|+|||+|+.++++.
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 46899999999999999999864
No 318
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.71 E-value=0.022 Score=54.15 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=15.0
Q ss_pred ceEEEECCCCCChhHHHHHHH-HHcC
Q 009640 229 RGYLLYGPPGSGKSSLIAAMA-NYLC 253 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA-~~l~ 253 (530)
.-+.|.||+|+||||+++.|+ ..+.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC----
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 347789999999999999999 8763
No 319
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=93.69 E-value=0.45 Score=48.52 Aligned_cols=54 Identities=19% Similarity=0.214 Sum_probs=32.1
Q ss_pred CCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCC---CCceEEEECCCCCChhHHHH
Q 009640 190 PSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRA---WKRGYLLYGPPGSGKSSLIA 246 (530)
Q Consensus 190 ~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~---~~rG~LL~GPPGTGKTsLa~ 246 (530)
..+|+++...+.+.+.+... -...+..++...++ ..+.+++.+|+|+|||....
T Consensus 36 ~~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~ 92 (410)
T 2j0s_A 36 TPTFDTMGLREDLLRGIYAY---GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFS 92 (410)
T ss_dssp CCSGGGGCCCHHHHHHHHHH---TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHH
T ss_pred CCCHhhcCCCHHHHHHHHHc---CCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHH
Confidence 34799988777766655431 11222223322211 13579999999999996544
No 320
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.66 E-value=0.081 Score=46.46 Aligned_cols=21 Identities=33% Similarity=0.580 Sum_probs=19.5
Q ss_pred eEEEECCCCCChhHHHHHHHH
Q 009640 230 GYLLYGPPGSGKSSLIAAMAN 250 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~ 250 (530)
-+++.|+||+|||||+.++.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 578999999999999999986
No 321
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=93.64 E-value=0.034 Score=63.08 Aligned_cols=23 Identities=39% Similarity=0.608 Sum_probs=19.9
Q ss_pred eEEEECCCCCChhHHHHHHHHHc
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l 252 (530)
-+++.||||||||+++.+++..+
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999988887765
No 322
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=93.62 E-value=0.5 Score=49.60 Aligned_cols=53 Identities=21% Similarity=0.242 Sum_probs=30.8
Q ss_pred CCCCcccccCChhhhHHHHHHHHHHHcChhhHhhhc-----CCCCceEEEECCCCCChhHH
Q 009640 189 HPSTFETLALEPQLKKQITEDLTAFANGKEFYHRVG-----RAWKRGYLLYGPPGSGKSSL 244 (530)
Q Consensus 189 ~~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g-----~~~~rG~LL~GPPGTGKTsL 244 (530)
...+|+++...+.+.+.+.+ .-...+..++... ....+.+|+.||+|+|||..
T Consensus 90 ~~~~f~~~~l~~~l~~~l~~---~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~ 147 (479)
T 3fmp_B 90 SVKSFEELRLKPQLLQGVYA---MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAA 147 (479)
T ss_dssp CCCCSGGGTCCHHHHHHHHH---TTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHH
T ss_pred CcCCHHHcCCCHHHHHHHHH---cCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHH
Confidence 34578888888776655543 0011111111111 01236799999999999976
No 323
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.58 E-value=0.041 Score=59.99 Aligned_cols=31 Identities=29% Similarity=0.209 Sum_probs=27.2
Q ss_pred eEEEECCCCCChhHHHHHHHHHcC----CcEEEEe
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLC----YDVYDLE 260 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~----~~i~~l~ 260 (530)
-++|.|+||+||||++++++..++ .+++.++
T Consensus 398 ~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD 432 (573)
T 1m8p_A 398 TIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLL 432 (573)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred EEEeecCCCCCHHHHHHHHHHHhcccCCceEEEEC
Confidence 477899999999999999999986 6777775
No 324
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.57 E-value=0.065 Score=56.57 Aligned_cols=39 Identities=18% Similarity=0.212 Sum_probs=29.5
Q ss_pred cCCCCceEEEECCCCCChhHHHHHHHHHc----CCcEEEEecC
Q 009640 224 GRAWKRGYLLYGPPGSGKSSLIAAMANYL----CYDVYDLELT 262 (530)
Q Consensus 224 g~~~~rG~LL~GPPGTGKTsLa~AiA~~l----~~~i~~l~l~ 262 (530)
|++...-++|.||||+|||+|+..+|..+ |.++..+++.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 45555568999999999999999988754 4566666543
No 325
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.54 E-value=0.032 Score=55.44 Aligned_cols=36 Identities=14% Similarity=0.178 Sum_probs=24.9
Q ss_pred eEEEECCCCCChhHHHHHHHHHcC---CcEEEEecCccC
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLC---YDVYDLELTKVT 265 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~---~~i~~l~l~~~~ 265 (530)
-+.|.||+|+||||+++.++..++ ..+..+++..+.
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 477899999999999999999876 445555555543
No 326
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=93.51 E-value=0.037 Score=60.84 Aligned_cols=24 Identities=33% Similarity=0.576 Sum_probs=20.6
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l 252 (530)
+-+++.||||||||+++.++...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 568999999999999998877655
No 327
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.48 E-value=0.054 Score=51.89 Aligned_cols=30 Identities=20% Similarity=0.222 Sum_probs=21.8
Q ss_pred EEEECCCCCChhHHHHHHHHHc-------CCcEEEEe
Q 009640 231 YLLYGPPGSGKSSLIAAMANYL-------CYDVYDLE 260 (530)
Q Consensus 231 ~LL~GPPGTGKTsLa~AiA~~l-------~~~i~~l~ 260 (530)
+.|.||+|+||||+++.++..+ +++++...
T Consensus 28 I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 28 ITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR 64 (227)
T ss_dssp EEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence 6778999999999999999988 56665443
No 328
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.45 E-value=0.019 Score=55.82 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=21.8
Q ss_pred eEEEECCCCCChhHHHHHHHHHcC
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLC 253 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~ 253 (530)
-+.|.|++|+||||+++.||..+.
T Consensus 26 ~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 26 KISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp EEEEECSTTSSHHHHHTTTGGGCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 477899999999999999999983
No 329
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.41 E-value=0.089 Score=53.10 Aligned_cols=24 Identities=21% Similarity=0.166 Sum_probs=21.6
Q ss_pred eEEEECCCCCChhHHHHHHHHHcC
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLC 253 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~ 253 (530)
-+-|.||+|+||||+++.|+..++
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 467889999999999999999875
No 330
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.41 E-value=0.13 Score=54.07 Aligned_cols=62 Identities=16% Similarity=0.217 Sum_probs=38.8
Q ss_pred hhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc----CCcEEEEecC
Q 009640 201 QLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL----CYDVYDLELT 262 (530)
Q Consensus 201 ~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l----~~~i~~l~l~ 262 (530)
.+.+.+.+.+...+.....--......++.+++.|++|+||||++..+|..+ |..+.-+++.
T Consensus 73 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D 138 (433)
T 2xxa_A 73 EFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSAD 138 (433)
T ss_dssp TTHHHHHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECC
T ss_pred HHHHHHHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 3445566666666643210000111234678889999999999999999776 5666655543
No 331
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.37 E-value=0.05 Score=51.99 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=22.5
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcC
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLC 253 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~ 253 (530)
.-+.+.|++|+||||+++.++..++
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3478999999999999999999994
No 332
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.35 E-value=0.13 Score=46.30 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=21.0
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l 252 (530)
--++|.|+||+|||+|++.+.+..
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 358999999999999999888755
No 333
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.33 E-value=0.045 Score=47.76 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=20.0
Q ss_pred eEEEECCCCCChhHHHHHHHHH
Q 009640 230 GYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~ 251 (530)
-+++.|++|+|||||+.++++.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999874
No 334
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.29 E-value=0.074 Score=55.99 Aligned_cols=39 Identities=15% Similarity=0.066 Sum_probs=29.2
Q ss_pred cCCCCceEEEECCCCCChhHHHHHHHHHc----CCcEEEEecC
Q 009640 224 GRAWKRGYLLYGPPGSGKSSLIAAMANYL----CYDVYDLELT 262 (530)
Q Consensus 224 g~~~~rG~LL~GPPGTGKTsLa~AiA~~l----~~~i~~l~l~ 262 (530)
|++...-++|.|+||+|||+|+..+|... +.++..+++.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 45555568999999999999999888654 4556666554
No 335
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.28 E-value=0.044 Score=50.96 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=21.7
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l 252 (530)
.-++|.|+||+|||+|+.++++..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999999864
No 336
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.27 E-value=0.045 Score=50.30 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=20.7
Q ss_pred eEEEECCCCCChhHHHHHHHHHc
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l 252 (530)
-+.|.||+|+|||||++++++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 57899999999999999999863
No 337
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=93.21 E-value=0.04 Score=62.53 Aligned_cols=33 Identities=27% Similarity=0.344 Sum_probs=24.3
Q ss_pred eEEEECCCCCChhHHHHHHHHHc----CCcEEEEecC
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYL----CYDVYDLELT 262 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l----~~~i~~l~l~ 262 (530)
-+|+.||||||||+++..++..+ +..+..+..+
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~t 413 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPS 413 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCc
Confidence 57899999999999888776544 4555555444
No 338
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.18 E-value=0.026 Score=60.00 Aligned_cols=26 Identities=23% Similarity=0.498 Sum_probs=23.1
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCC
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCY 254 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~ 254 (530)
.-++|.|.||+||||+++.+|..++.
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l~~ 65 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYLNF 65 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 46899999999999999999998753
No 339
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.18 E-value=0.059 Score=53.94 Aligned_cols=25 Identities=36% Similarity=0.565 Sum_probs=22.2
Q ss_pred CceEEEECCCCCChhHHHHHHHHHc
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l 252 (530)
+.-+.|.||+|+||||+++.||..+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 3457889999999999999999887
No 340
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.15 E-value=0.05 Score=47.77 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=20.6
Q ss_pred ceEEEECCCCCChhHHHHHHHHH
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~ 251 (530)
--+++.|+||+|||||+.++.+.
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999874
No 341
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.14 E-value=0.046 Score=51.56 Aligned_cols=22 Identities=41% Similarity=0.406 Sum_probs=20.1
Q ss_pred eEEEECCCCCChhHHHHHHHHH
Q 009640 230 GYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~ 251 (530)
-+.|.||.|+|||||+++|+..
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4778999999999999999986
No 342
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.10 E-value=0.045 Score=50.17 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=20.7
Q ss_pred eEEEECCCCCChhHHHHHHHHHc
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l 252 (530)
-+.|.||+|+|||||++.+++..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999999864
No 343
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.05 E-value=0.13 Score=51.19 Aligned_cols=60 Identities=18% Similarity=0.240 Sum_probs=37.8
Q ss_pred hhhHHHHHHHHHHHcChhhHhh-hcCCC-CceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecC
Q 009640 201 QLKKQITEDLTAFANGKEFYHR-VGRAW-KRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELT 262 (530)
Q Consensus 201 ~~k~~i~~~l~~~l~~~~~y~~-~g~~~-~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~ 262 (530)
.+++.+.+.+...+.... .. +.... +.-+++.||+|+||||++..+|..+ +..+.-++..
T Consensus 71 ~~~~~~~~~l~~~~~~~~--~~~i~~~~~~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 71 WFIKIVYDELSNLFGGDK--EPKVIPDKIPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp HHHHHHHHHHHHHTTCSC--CCCCSCSSSSEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred HHHHHHHHHHHHHhcccc--ccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 345556666666554321 11 11111 4457788999999999999999877 5566555543
No 344
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.03 E-value=0.035 Score=53.52 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=21.0
Q ss_pred eEEEECCCCCChhHHHHHHHHHc
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l 252 (530)
-+.|.||||+||||+++.++..+
T Consensus 29 ~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 29 FIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp EEEEEESTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999987
No 345
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.99 E-value=0.05 Score=54.69 Aligned_cols=24 Identities=21% Similarity=0.174 Sum_probs=21.4
Q ss_pred eEEEECCCCCChhHHHHHHHHHcC
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLC 253 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~ 253 (530)
-+.|.||+|+|||||++.|+..+.
T Consensus 92 ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 92 IIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHhhcc
Confidence 366899999999999999999874
No 346
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=92.97 E-value=0.19 Score=46.41 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=20.3
Q ss_pred ceEEEECCCCCChhHHHHHHHHH
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~ 251 (530)
--++|.|++|+|||+|+.++.+.
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 36899999999999999999853
No 347
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=92.95 E-value=0.078 Score=50.36 Aligned_cols=30 Identities=20% Similarity=0.113 Sum_probs=25.3
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCcEEEE
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCYDVYDL 259 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~~i~~l 259 (530)
-+.|.||+|+||||+++.++..++.++..+
T Consensus 7 ~i~~eG~~g~GKst~~~~l~~~l~~~~~~~ 36 (216)
T 3tmk_A 7 LILIEGLDRTGKTTQCNILYKKLQPNCKLL 36 (216)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHCSSEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccceEE
Confidence 467889999999999999999998754433
No 348
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=92.93 E-value=0.075 Score=50.30 Aligned_cols=31 Identities=29% Similarity=0.320 Sum_probs=28.0
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCcEEEEec
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCYDVYDLEL 261 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l 261 (530)
.+-|.|.+||||||+++.++. +|+++++.+.
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vidaD~ 41 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVDTDL 41 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEECcH
Confidence 577999999999999999998 9999998764
No 349
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=92.93 E-value=1 Score=45.62 Aligned_cols=53 Identities=13% Similarity=0.125 Sum_probs=30.5
Q ss_pred CCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcC---CCCceEEEECCCCCChhHHH
Q 009640 190 PSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGR---AWKRGYLLYGPPGSGKSSLI 245 (530)
Q Consensus 190 ~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~---~~~rG~LL~GPPGTGKTsLa 245 (530)
..+|+++...+.+.+.+.+. -...+..|+...+ ...+.+++.+|+|+|||..+
T Consensus 39 ~~~f~~~~l~~~~~~~l~~~---~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~ 94 (414)
T 3eiq_A 39 VDSFDDMNLSESLLRGIYAY---GFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATF 94 (414)
T ss_dssp CCCGGGGCCCHHHHHHHHHT---TCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHH
T ss_pred hcCHhhCCCCHHHHHHHHHc---CCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHH
Confidence 35788887777766555431 1112222222111 11356899999999999864
No 350
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.90 E-value=0.048 Score=55.76 Aligned_cols=28 Identities=25% Similarity=0.338 Sum_probs=24.2
Q ss_pred CceEEEECCCCCChhHHHHHHHHHcCCc
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYLCYD 255 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l~~~ 255 (530)
..-+.|.||+|+|||||++.|+..+..+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3458899999999999999999997654
No 351
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.89 E-value=0.058 Score=47.36 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=20.3
Q ss_pred eEEEECCCCCChhHHHHHHHHHc
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l 252 (530)
-+++.|++|+|||||+.++.+.-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998643
No 352
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=92.75 E-value=0.18 Score=52.20 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=21.0
Q ss_pred eEEEECCCCCChhHHHHHHHHHc
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l 252 (530)
-+++.||||+|||+|+..||+..
T Consensus 176 r~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 176 RGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp EEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEecCCCCChhHHHHHHHHHH
Confidence 48999999999999999999865
No 353
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=92.74 E-value=0.37 Score=53.70 Aligned_cols=18 Identities=28% Similarity=0.405 Sum_probs=16.0
Q ss_pred CceEEEECCCCCChhHHH
Q 009640 228 KRGYLLYGPPGSGKSSLI 245 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa 245 (530)
.+.+++.||+|+|||..+
T Consensus 39 ~~~~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIA 56 (720)
T ss_dssp TCEEEEECCGGGCHHHHH
T ss_pred CCcEEEEcCCccHHHHHH
Confidence 467999999999999876
No 354
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=92.72 E-value=0.065 Score=56.41 Aligned_cols=24 Identities=33% Similarity=0.553 Sum_probs=20.1
Q ss_pred CceEEEECCCCCChhHHHHHHHHH
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~ 251 (530)
.+-.+++|+||||||+++..+++.
T Consensus 161 ~~v~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 161 AKVVLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp SEEEEEEECTTSCHHHHHHHHCCT
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcc
Confidence 345788999999999999888753
No 355
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.70 E-value=0.099 Score=53.13 Aligned_cols=38 Identities=24% Similarity=0.156 Sum_probs=28.8
Q ss_pred cCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEec
Q 009640 224 GRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLEL 261 (530)
Q Consensus 224 g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l 261 (530)
|+....-++|.|+||+|||+|+..+|..+ +.++..+++
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 34444558999999999999999998764 566666654
No 356
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.69 E-value=0.062 Score=47.74 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.4
Q ss_pred ceEEEECCCCCChhHHHHHHHHH
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~ 251 (530)
--+++.|+||+|||||+.++.+.
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 357
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.62 E-value=0.051 Score=52.42 Aligned_cols=26 Identities=31% Similarity=0.489 Sum_probs=22.7
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCC
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCY 254 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~ 254 (530)
.-+.|.||.|+|||||+++|+..+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~p 50 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVKP 50 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 46779999999999999999997743
No 358
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.62 E-value=0.06 Score=47.35 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=20.2
Q ss_pred ceEEEECCCCCChhHHHHHHHHH
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~ 251 (530)
--+++.|+||+|||||+.++.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999999864
No 359
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.61 E-value=0.065 Score=47.18 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=20.5
Q ss_pred ceEEEECCCCCChhHHHHHHHHH
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~ 251 (530)
--+++.|+||+|||||+.++.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999865
No 360
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.60 E-value=0.058 Score=53.92 Aligned_cols=24 Identities=21% Similarity=0.214 Sum_probs=21.6
Q ss_pred eEEEECCCCCChhHHHHHHHHHcC
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLC 253 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~ 253 (530)
-+-|.||+|+|||||++.|+..++
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 367899999999999999999876
No 361
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.59 E-value=0.063 Score=47.72 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=19.7
Q ss_pred eEEEECCCCCChhHHHHHHHHH
Q 009640 230 GYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~ 251 (530)
-+.|.|+||+|||||+.++++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999863
No 362
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.58 E-value=0.25 Score=59.19 Aligned_cols=28 Identities=29% Similarity=0.439 Sum_probs=23.5
Q ss_pred CCCceEEEECCCCCChhHHHHHHHHHcC
Q 009640 226 AWKRGYLLYGPPGSGKSSLIAAMANYLC 253 (530)
Q Consensus 226 ~~~rG~LL~GPPGTGKTsLa~AiA~~l~ 253 (530)
+...-+.+.||.|+|||||+++|.+++.
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred cCCcEEEEEecCCCcHHHHHHHhccccc
Confidence 3334588999999999999999999874
No 363
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=92.55 E-value=0.18 Score=53.65 Aligned_cols=29 Identities=28% Similarity=0.390 Sum_probs=25.5
Q ss_pred EEEECCCCCChhHH-HHHHHHHcCCcEEEE
Q 009640 231 YLLYGPPGSGKSSL-IAAMANYLCYDVYDL 259 (530)
Q Consensus 231 ~LL~GPPGTGKTsL-a~AiA~~l~~~i~~l 259 (530)
.++.|++|||||+| +..|++..+.+++.+
T Consensus 165 ~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V 194 (502)
T 2qe7_A 165 ELIIGDRQTGKTTIAIDTIINQKGQDVICI 194 (502)
T ss_dssp CEEEECSSSCHHHHHHHHHHGGGSCSEEEE
T ss_pred EEEECCCCCCchHHHHHHHHHhhcCCcEEE
Confidence 79999999999999 679999998886544
No 364
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.55 E-value=0.068 Score=46.87 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=20.4
Q ss_pred ceEEEECCCCCChhHHHHHHHHH
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~ 251 (530)
--+++.|+||+|||||+.++.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999863
No 365
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=92.53 E-value=0.18 Score=46.41 Aligned_cols=23 Identities=17% Similarity=0.280 Sum_probs=20.3
Q ss_pred ceEEEECCCCCChhHHHHHHHHH
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~ 251 (530)
.-++|.|+||+|||+|+.++.+.
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhhC
Confidence 35899999999999999999763
No 366
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.50 E-value=0.068 Score=47.55 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=20.9
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l 252 (530)
.-+++.|++|+|||||+.++.+.-
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 468999999999999999998743
No 367
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=92.50 E-value=0.061 Score=47.79 Aligned_cols=23 Identities=48% Similarity=0.533 Sum_probs=20.1
Q ss_pred eEEEECCCCCChhHHHHHHHHHc
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l 252 (530)
-.+++||.|+|||+++.||.--+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 35789999999999999998655
No 368
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.50 E-value=0.042 Score=52.37 Aligned_cols=26 Identities=27% Similarity=0.268 Sum_probs=22.4
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCc
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCYD 255 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~~ 255 (530)
-+.|.||.|+|||||+++|+..+..+
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~~p~ 57 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLDAPT 57 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSSCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 47799999999999999999877543
No 369
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.48 E-value=0.065 Score=47.42 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=20.0
Q ss_pred ceEEEECCCCCChhHHHHHHHHH
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~ 251 (530)
--+++.|+||+|||+|+.++.+.
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 35899999999999999999753
No 370
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=92.48 E-value=0.06 Score=48.87 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=20.8
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l 252 (530)
--+++.|++|+|||+|+.++.+.-
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999997654
No 371
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=92.45 E-value=0.12 Score=54.47 Aligned_cols=31 Identities=35% Similarity=0.438 Sum_probs=26.0
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCcEEEEe
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCYDVYDLE 260 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~ 260 (530)
-+.|.||+|+|||||++.||+....+.-.+.
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~ 189 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYTRADVIVVG 189 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSCCSEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCCeEEEE
Confidence 3789999999999999999999976654443
No 372
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.43 E-value=0.044 Score=52.68 Aligned_cols=27 Identities=26% Similarity=0.338 Sum_probs=23.0
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCCc
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCYD 255 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~~ 255 (530)
.-+.|.||.|+|||||+++|+..+.-+
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~~p~ 58 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLDKPT 58 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 347899999999999999999877543
No 373
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=92.43 E-value=0.061 Score=52.84 Aligned_cols=25 Identities=24% Similarity=0.418 Sum_probs=21.6
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCC
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCY 254 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~ 254 (530)
.+.|.||+|+|||||+++|++....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~ 28 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVS 28 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4678999999999999999998743
No 374
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=92.42 E-value=0.12 Score=46.58 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.4
Q ss_pred ceEEEECCCCCChhHHHHHHHHH
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~ 251 (530)
.-+++.|+||+|||+|+.++++.
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999864
No 375
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.37 E-value=0.074 Score=46.56 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.0
Q ss_pred eEEEECCCCCChhHHHHHHHHH
Q 009640 230 GYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~ 251 (530)
-+++.|+||+|||||+.++.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999999874
No 376
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.35 E-value=0.052 Score=51.49 Aligned_cols=26 Identities=31% Similarity=0.466 Sum_probs=22.6
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCc
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCYD 255 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~~ 255 (530)
-+.|.||.|+|||||+++|+..+..+
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~~p~ 62 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYLKPL 62 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 47899999999999999999887543
No 377
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.34 E-value=0.1 Score=48.58 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=22.5
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcC
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLC 253 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~ 253 (530)
+-+++.|+||+|||||+.+++..+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4688999999999999999998864
No 378
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.33 E-value=0.21 Score=52.29 Aligned_cols=59 Identities=20% Similarity=0.180 Sum_probs=37.4
Q ss_pred hhhHHHHHHHHHHHcChhhHhhhcCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEec
Q 009640 201 QLKKQITEDLTAFANGKEFYHRVGRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLEL 261 (530)
Q Consensus 201 ~~k~~i~~~l~~~l~~~~~y~~~g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l 261 (530)
.+.+.+.+.+...+.... ..+....+.-+++.||+|+||||++..+|..+ +..+.-+..
T Consensus 73 ~~~~~v~~~L~~~~~~~~--~~i~l~~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 73 VILATVYEALKEALGGEA--RLPVLKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (425)
T ss_dssp HHHHHHHHHHHHHTTSSC--CCCCCCSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred HHHHHHHHHHHHHhCCCc--ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence 345556666655554321 12222234567888999999999999999887 455555543
No 379
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.32 E-value=0.11 Score=53.01 Aligned_cols=32 Identities=34% Similarity=0.339 Sum_probs=25.4
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc---CCcEEEEe
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLE 260 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~ 260 (530)
.-+.|.|+||+|||||+.+++..+ +..+..++
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 458899999999999999999886 55544443
No 380
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.30 E-value=0.05 Score=52.36 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=21.6
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l 252 (530)
.-+.|.||.|+|||||++.|+..+
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 357899999999999999999876
No 381
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.29 E-value=0.075 Score=47.77 Aligned_cols=23 Identities=26% Similarity=0.444 Sum_probs=20.6
Q ss_pred ceEEEECCCCCChhHHHHHHHHH
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~ 251 (530)
--++|.|+||+|||+|+.++.+.
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999863
No 382
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=92.28 E-value=0.087 Score=56.30 Aligned_cols=39 Identities=15% Similarity=-0.035 Sum_probs=29.4
Q ss_pred cCCCCceEEEECCCCCChhHHHHHHHHHc----CCcEEEEecC
Q 009640 224 GRAWKRGYLLYGPPGSGKSSLIAAMANYL----CYDVYDLELT 262 (530)
Q Consensus 224 g~~~~rG~LL~GPPGTGKTsLa~AiA~~l----~~~i~~l~l~ 262 (530)
|++...-++|.|+||+|||+|+..+|..+ +.++..+++.
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 45555568999999999999999998765 3456666543
No 383
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.25 E-value=0.052 Score=51.44 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=21.0
Q ss_pred eEEEECCCCCChhHHHHHHHHHc
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l 252 (530)
=+.|.|++|+||||.++.++..+
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36788999999999999999988
No 384
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.24 E-value=0.061 Score=48.75 Aligned_cols=21 Identities=29% Similarity=0.637 Sum_probs=19.3
Q ss_pred eEEEECCCCCChhHHHHHHHH
Q 009640 230 GYLLYGPPGSGKSSLIAAMAN 250 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~ 250 (530)
-++|.|+||+|||||+..+++
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999986
No 385
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.21 E-value=0.11 Score=54.79 Aligned_cols=39 Identities=21% Similarity=0.149 Sum_probs=29.4
Q ss_pred cCCCCceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecC
Q 009640 224 GRAWKRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLELT 262 (530)
Q Consensus 224 g~~~~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~l~ 262 (530)
|++...-+++.|+||+|||+|+..+|... |.++..+++.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 45554558999999999999999888765 5566666544
No 386
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.20 E-value=0.072 Score=47.26 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.9
Q ss_pred eEEEECCCCCChhHHHHHHHHH
Q 009640 230 GYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~ 251 (530)
-+++.|++|+|||+|+.++.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 387
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=92.18 E-value=0.11 Score=52.98 Aligned_cols=31 Identities=26% Similarity=0.372 Sum_probs=26.2
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCcEEEEe
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCYDVYDLE 260 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~ 260 (530)
-+.|.||+|+|||||++.|++.+..+...+.
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~ 103 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGASADIIVLA 103 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSCCSEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCEEEEE
Confidence 3789999999999999999999977654443
No 388
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.17 E-value=0.076 Score=46.75 Aligned_cols=21 Identities=33% Similarity=0.570 Sum_probs=18.7
Q ss_pred eEEEECCCCCChhHHHHHHHH
Q 009640 230 GYLLYGPPGSGKSSLIAAMAN 250 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~ 250 (530)
-+++.|+||+|||+|+.++.+
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999999963
No 389
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.16 E-value=0.081 Score=46.59 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=20.3
Q ss_pred ceEEEECCCCCChhHHHHHHHHH
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~ 251 (530)
.-+++.|+||+|||+|+.++.+.
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999763
No 390
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.12 E-value=0.071 Score=47.43 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=20.0
Q ss_pred ceEEEECCCCCChhHHHHHHHHH
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~ 251 (530)
--+++.|+||+|||+|+.++.+.
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999999753
No 391
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.07 E-value=0.069 Score=48.10 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=20.4
Q ss_pred ceEEEECCCCCChhHHHHHHHHH
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~ 251 (530)
.-++|.|++|+|||||+.++++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35889999999999999999873
No 392
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.05 E-value=0.058 Score=52.50 Aligned_cols=26 Identities=46% Similarity=0.726 Sum_probs=22.5
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCc
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCYD 255 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~~ 255 (530)
-+.|.||.|+|||||+++|+..+..+
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~~p~ 60 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFLKAD 60 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 37799999999999999999887543
No 393
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=92.04 E-value=0.082 Score=47.76 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.8
Q ss_pred ceEEEECCCCCChhHHHHHHHHH
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~ 251 (530)
--+++.|+||+|||||+.++.+.
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999875
No 394
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.02 E-value=0.058 Score=52.70 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=22.5
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCc
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCYD 255 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~~ 255 (530)
-+.|.||.|+|||||+++|+..+..+
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~~p~ 59 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLEKPS 59 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 37799999999999999999987543
No 395
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=91.98 E-value=0.086 Score=47.84 Aligned_cols=23 Identities=26% Similarity=0.470 Sum_probs=20.7
Q ss_pred ceEEEECCCCCChhHHHHHHHHH
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~ 251 (530)
--++|.|+||+|||+|+.++.+.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999874
No 396
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.98 E-value=0.06 Score=51.44 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=22.1
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcC
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLC 253 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~ 253 (530)
.-+.|.||.|+|||||+++|+..+.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc
Confidence 3478999999999999999999874
No 397
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.97 E-value=0.069 Score=51.74 Aligned_cols=22 Identities=41% Similarity=0.496 Sum_probs=20.3
Q ss_pred eEEEECCCCCChhHHHHHHHHH
Q 009640 230 GYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~ 251 (530)
-+.|.||.|+|||||++.|+..
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999986
No 398
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=91.92 E-value=0.51 Score=45.56 Aligned_cols=17 Identities=35% Similarity=0.456 Sum_probs=14.7
Q ss_pred ceEEEECCCCCChhHHH
Q 009640 229 RGYLLYGPPGSGKSSLI 245 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa 245 (530)
+.+|+.+|+|+|||..+
T Consensus 92 ~~~lv~a~TGsGKT~~~ 108 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAF 108 (262)
T ss_dssp CCCEECCCTTSCHHHHH
T ss_pred CcEEEEccCCCCchHHH
Confidence 56899999999999753
No 399
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=91.92 E-value=0.14 Score=46.56 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=19.6
Q ss_pred ceEEEECCCCCChhHHHHHHHH
Q 009640 229 RGYLLYGPPGSGKSSLIAAMAN 250 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~ 250 (530)
.-+++.|++|+|||+|+.++.+
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999974
No 400
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=91.90 E-value=0.073 Score=46.73 Aligned_cols=21 Identities=43% Similarity=0.688 Sum_probs=18.7
Q ss_pred eEEEECCCCCChhHHHHHHHH
Q 009640 230 GYLLYGPPGSGKSSLIAAMAN 250 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~ 250 (530)
-+++.|+||+|||+|+.++.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999999864
No 401
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=91.90 E-value=0.077 Score=56.95 Aligned_cols=26 Identities=12% Similarity=0.020 Sum_probs=23.5
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCC
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCY 254 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~ 254 (530)
..+.|.|++|+||||+++++|..|+.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 35788999999999999999999985
No 402
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.89 E-value=0.062 Score=51.80 Aligned_cols=25 Identities=24% Similarity=0.505 Sum_probs=21.9
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcC
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLC 253 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~ 253 (530)
.-+.|.||.|+|||||+++|+..+.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3478999999999999999998763
No 403
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=91.85 E-value=0.075 Score=57.21 Aligned_cols=29 Identities=24% Similarity=0.295 Sum_probs=24.2
Q ss_pred cCCCCceEEEECCCCCChhHHHHHHHHHc
Q 009640 224 GRAWKRGYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 224 g~~~~rG~LL~GPPGTGKTsLa~AiA~~l 252 (530)
|++...-++|.||||+|||+|+..+|...
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 44455568999999999999999999765
No 404
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.81 E-value=0.056 Score=52.46 Aligned_cols=26 Identities=42% Similarity=0.537 Sum_probs=22.9
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCc
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCYD 255 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~~ 255 (530)
-+.|.||.|+|||||++.|+..+..+
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~~p~ 53 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMTSGK 53 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCE
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 47899999999999999999987654
No 405
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=91.80 E-value=0.22 Score=57.85 Aligned_cols=21 Identities=33% Similarity=0.449 Sum_probs=19.1
Q ss_pred ceEEEECCCCCChhHHHHHHH
Q 009640 229 RGYLLYGPPGSGKSSLIAAMA 249 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA 249 (530)
+-++|.||.|+||||+++.++
T Consensus 790 ~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHH
Confidence 568999999999999999984
No 406
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.79 E-value=0.1 Score=47.67 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=20.8
Q ss_pred ceEEEECCCCCChhHHHHHHHHH
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~ 251 (530)
--+++.|+||+|||+|+.++.+.
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999874
No 407
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.76 E-value=0.058 Score=52.23 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=22.6
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCc
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCYD 255 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~~ 255 (530)
-+.|.||.|+|||||++.|+..+..+
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~~p~ 62 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFYIPE 62 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 47899999999999999999987543
No 408
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.75 E-value=0.074 Score=52.09 Aligned_cols=23 Identities=43% Similarity=0.547 Sum_probs=20.8
Q ss_pred eEEEECCCCCChhHHHHHHHHHc
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l 252 (530)
-+.|.||.|+|||||++.|+..+
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCT
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999864
No 409
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=91.71 E-value=0.087 Score=47.54 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.6
Q ss_pred ceEEEECCCCCChhHHHHHHHHH
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~ 251 (530)
--+++.|+||+|||+|+.++++.
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999874
No 410
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.71 E-value=0.058 Score=52.81 Aligned_cols=26 Identities=31% Similarity=0.557 Sum_probs=22.5
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCc
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCYD 255 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~~ 255 (530)
-+.|.||.|+|||||+++|+..+..+
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~~p~ 77 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLEDFD 77 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC
Confidence 47899999999999999999987543
No 411
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=91.71 E-value=0.087 Score=47.25 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=20.5
Q ss_pred ceEEEECCCCCChhHHHHHHHHH
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~ 251 (530)
--+++.|++|+|||+|+.++.+.
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 412
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=91.71 E-value=0.087 Score=46.78 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=20.8
Q ss_pred ceEEEECCCCCChhHHHHHHHHH
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~ 251 (530)
.-+++.|++|+|||+|+.++.+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999875
No 413
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=91.71 E-value=0.96 Score=47.00 Aligned_cols=52 Identities=13% Similarity=0.140 Sum_probs=30.5
Q ss_pred CCCcccccCChhhhHHHHHHHHHHHcChhhHhhhcCC---CCceEEEECCCCCChhHH
Q 009640 190 PSTFETLALEPQLKKQITEDLTAFANGKEFYHRVGRA---WKRGYLLYGPPGSGKSSL 244 (530)
Q Consensus 190 ~~~f~~l~~~~~~k~~i~~~l~~~l~~~~~y~~~g~~---~~rG~LL~GPPGTGKTsL 244 (530)
-.+|+++...+.+.+.|.+ .-...+..++...++ -.+.+++.+|+|+|||..
T Consensus 55 ~~~f~~~~l~~~l~~~l~~---~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a 109 (434)
T 2db3_A 55 IQHFTSADLRDIIIDNVNK---SGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAA 109 (434)
T ss_dssp CCCGGGSCCCHHHHHHHHH---TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHH
T ss_pred cCChhhcCCCHHHHHHHHH---cCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHH
Confidence 3578888777766555432 011222223222211 136799999999999983
No 414
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=91.70 E-value=0.096 Score=47.31 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.6
Q ss_pred eEEEECCCCCChhHHHHHHHHHc
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l 252 (530)
-+++.|++|+|||||+.++++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 415
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=91.70 E-value=0.07 Score=54.63 Aligned_cols=25 Identities=32% Similarity=0.510 Sum_probs=22.4
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcC
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLC 253 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~ 253 (530)
.-++|.||+|+|||||+++|+....
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4689999999999999999998764
No 416
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.70 E-value=0.068 Score=51.46 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=22.5
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCc
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCYD 255 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~~ 255 (530)
-+.|.||.|+|||||++.|+..+..+
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~~p~ 59 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLVRAQ 59 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 37799999999999999999987543
No 417
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.68 E-value=0.071 Score=54.66 Aligned_cols=25 Identities=24% Similarity=0.474 Sum_probs=22.0
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCC
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCY 254 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~ 254 (530)
-+.|.||.|+|||||+++||....-
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~~p 56 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFEQP 56 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCchHHHHHHHHhcCCCC
Confidence 3779999999999999999998743
No 418
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=91.66 E-value=0.13 Score=53.81 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=20.3
Q ss_pred eEEEECCCCCChhHHHHHHHHHc
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l 252 (530)
-+.|.||+|+|||||+++|++..
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 46789999999999999999854
No 419
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=91.65 E-value=0.09 Score=53.30 Aligned_cols=23 Identities=39% Similarity=0.564 Sum_probs=20.7
Q ss_pred eEEEECCCCCChhHHHHHHHHHc
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l 252 (530)
-+.|.||||+|||||+++++..+
T Consensus 57 ~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 57 RVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 46789999999999999999876
No 420
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.64 E-value=0.06 Score=53.10 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=22.6
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCc
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCYD 255 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~~ 255 (530)
-+.|.||.|+|||||+++|+..+..+
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~~p~ 61 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGILKPS 61 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC
Confidence 37899999999999999999987543
No 421
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=91.58 E-value=0.11 Score=46.19 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.4
Q ss_pred CceEEEECCCCCChhHHHHHHHH
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMAN 250 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~ 250 (530)
..-+++.|+||+|||||+.++.+
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34689999999999999999975
No 422
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=91.58 E-value=0.22 Score=50.63 Aligned_cols=23 Identities=43% Similarity=0.712 Sum_probs=20.7
Q ss_pred eEEEECCCCCChhHHHHHHHHHc
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l 252 (530)
-+.|.|+||+|||||+.+++..+
T Consensus 76 ~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 76 RVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 47789999999999999999865
No 423
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=91.57 E-value=0.1 Score=49.87 Aligned_cols=29 Identities=28% Similarity=0.265 Sum_probs=23.8
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCC----cEEE
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCY----DVYD 258 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~----~i~~ 258 (530)
-+.|.|++|+||||+++.++..++. +++.
T Consensus 23 ~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 23 FITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 3667899999999999999998754 5554
No 424
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=91.56 E-value=0.17 Score=53.95 Aligned_cols=29 Identities=28% Similarity=0.430 Sum_probs=25.5
Q ss_pred EEEECCCCCChhHH-HHHHHHHcCCcEEEE
Q 009640 231 YLLYGPPGSGKSSL-IAAMANYLCYDVYDL 259 (530)
Q Consensus 231 ~LL~GPPGTGKTsL-a~AiA~~l~~~i~~l 259 (530)
.++.|++|||||+| +..|++..+.+++.+
T Consensus 178 ~~I~g~~g~GKT~Lal~~I~~~~~~dv~~V 207 (515)
T 2r9v_A 178 ELIIGDRQTGKTAIAIDTIINQKGQGVYCI 207 (515)
T ss_dssp EEEEEETTSSHHHHHHHHHHTTTTTTEEEE
T ss_pred EEEEcCCCCCccHHHHHHHHHhhcCCcEEE
Confidence 89999999999999 579999998886544
No 425
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=91.52 E-value=0.11 Score=47.05 Aligned_cols=24 Identities=33% Similarity=0.371 Sum_probs=20.9
Q ss_pred CceEEEECCCCCChhHHHHHHHHH
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~ 251 (530)
..-+++.|++|+|||||+.++.+.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 356899999999999999999753
No 426
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.50 E-value=0.11 Score=46.35 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.4
Q ss_pred ceEEEECCCCCChhHHHHHHHHH
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~ 251 (530)
--+++.|+||+|||+|+.++.+.
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 36899999999999999999864
No 427
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=91.50 E-value=0.1 Score=47.17 Aligned_cols=24 Identities=29% Similarity=0.326 Sum_probs=21.0
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l 252 (530)
.-++|.|++|+|||+|+.++.+.-
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 368999999999999999998643
No 428
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.47 E-value=0.053 Score=49.54 Aligned_cols=25 Identities=32% Similarity=0.360 Sum_probs=22.2
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcC
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLC 253 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~ 253 (530)
.-+.|.||+|+|||||++.|+..+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3578999999999999999999874
No 429
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=91.47 E-value=0.083 Score=54.21 Aligned_cols=24 Identities=42% Similarity=0.574 Sum_probs=21.6
Q ss_pred eEEEECCCCCChhHHHHHHHHHcC
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLC 253 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~ 253 (530)
-+.|.||.|+|||||+++||....
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCchHHHHHHHHhcCCC
Confidence 377899999999999999999874
No 430
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=91.46 E-value=0.081 Score=47.51 Aligned_cols=22 Identities=41% Similarity=0.635 Sum_probs=19.9
Q ss_pred eEEEECCCCCChhHHHHHHHHH
Q 009640 230 GYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~ 251 (530)
-+.|.|+||+|||||+.++++.
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999864
No 431
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=91.46 E-value=0.11 Score=46.51 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=19.8
Q ss_pred eEEEECCCCCChhHHHHHHHHH
Q 009640 230 GYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~ 251 (530)
-+++.|+||+|||||+.++.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 432
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.46 E-value=0.073 Score=52.57 Aligned_cols=26 Identities=31% Similarity=0.630 Sum_probs=22.5
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCc
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCYD 255 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~~ 255 (530)
-+.|.||.|+|||||++.|+..+..+
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~~p~ 74 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYEPAT 74 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 37899999999999999999987543
No 433
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.45 E-value=0.071 Score=52.00 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=22.2
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcC
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLC 253 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~ 253 (530)
.-+.|.||.|+|||||+++|+..+.
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhccCC
Confidence 3488999999999999999998764
No 434
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=91.45 E-value=0.094 Score=46.56 Aligned_cols=22 Identities=41% Similarity=0.593 Sum_probs=19.6
Q ss_pred ceEEEECCCCCChhHHHHHHHH
Q 009640 229 RGYLLYGPPGSGKSSLIAAMAN 250 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~ 250 (530)
--+++.|+||+|||||+.++.+
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999864
No 435
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=91.44 E-value=0.11 Score=46.59 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=20.5
Q ss_pred ceEEEECCCCCChhHHHHHHHHH
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~ 251 (530)
--+++.|++|+|||+|+.++.+.
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35799999999999999999864
No 436
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=91.41 E-value=0.086 Score=54.05 Aligned_cols=25 Identities=28% Similarity=0.390 Sum_probs=22.0
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCC
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCY 254 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~ 254 (530)
-+.|.||+|+|||||++.||.....
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~p 55 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIYKP 55 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred EEEEEcCCCchHHHHHHHHHCCCCC
Confidence 3778999999999999999998753
No 437
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.41 E-value=0.075 Score=51.80 Aligned_cols=26 Identities=23% Similarity=0.448 Sum_probs=22.5
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCc
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCYD 255 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~~ 255 (530)
-+.|.||.|+|||||+++|+..+..+
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~~p~ 68 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLIKPS 68 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 47899999999999999999987543
No 438
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.41 E-value=0.17 Score=48.46 Aligned_cols=32 Identities=31% Similarity=0.518 Sum_probs=25.3
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc--CCcEEEEe
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYL--CYDVYDLE 260 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l--~~~i~~l~ 260 (530)
.-+++.|.+|+||||++..+|..+ +..+.-++
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 356788999999999999999876 55555444
No 439
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=91.37 E-value=0.033 Score=44.39 Aligned_cols=44 Identities=14% Similarity=0.047 Sum_probs=21.8
Q ss_pred HHHHHHHHHhhCCcCccchHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 009640 397 HAFKVLAKNYLGIESHHALFDVVESCIRAGGALTPAQIGEVLLRN 441 (530)
Q Consensus 397 ~~r~~i~~~~l~~~~~~~~~~~i~~l~~~~~~~spadi~~~l~~~ 441 (530)
++|..||+.++...... ....++.++..+.|||+|||.++|..+
T Consensus 1 ~~R~~Il~~~l~~~~~~-~~vdl~~lA~~t~G~SGADi~~l~~eA 44 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLA-PEADLDSLIIRNDSLSGAVIAAIMQEA 44 (82)
T ss_dssp -------------CEEC-TTCCSTTTTTSSCCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCC-CcCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 46889999888754332 111266778889999999999999744
No 440
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=91.37 E-value=0.18 Score=53.80 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=25.0
Q ss_pred EEEECCCCCChhHH-HHHHHHHcCCcEEEE
Q 009640 231 YLLYGPPGSGKSSL-IAAMANYLCYDVYDL 259 (530)
Q Consensus 231 ~LL~GPPGTGKTsL-a~AiA~~l~~~i~~l 259 (530)
.++.|++|||||+| +..|++..+.+++.+
T Consensus 166 ~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V 195 (507)
T 1fx0_A 166 ELIIGDRQTGKTAVATDTILNQQGQNVICV 195 (507)
T ss_dssp CBEEESSSSSHHHHHHHHHHTCCTTTCEEE
T ss_pred EEEecCCCCCccHHHHHHHHHhhcCCcEEE
Confidence 79999999999999 679999988776544
No 441
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=91.36 E-value=0.094 Score=53.65 Aligned_cols=25 Identities=32% Similarity=0.430 Sum_probs=22.0
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCC
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCY 254 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~ 254 (530)
-+.|.||.|+|||||+++||..+..
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~~p 67 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLERP 67 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Confidence 4779999999999999999998743
No 442
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.35 E-value=0.066 Score=52.04 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=21.7
Q ss_pred eEEEECCCCCChhHHHHHHHHHcC
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLC 253 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~ 253 (530)
-+.|.||.|+|||||++.|+..+.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999999874
No 443
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.34 E-value=0.074 Score=52.25 Aligned_cols=27 Identities=37% Similarity=0.469 Sum_probs=23.1
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCCc
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLCYD 255 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~~~ 255 (530)
.-+.|.||.|+|||||++.|+..+.-+
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~~p~ 72 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLYQPT 72 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 347899999999999999999987543
No 444
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=91.34 E-value=0.087 Score=54.27 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=22.1
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCC
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCY 254 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~ 254 (530)
-+.|.||.|+|||||+++||..+.-
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~~p 63 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLEEP 63 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCChHHHHHHHHHcCCCC
Confidence 4779999999999999999998753
No 445
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=91.31 E-value=0.088 Score=54.38 Aligned_cols=25 Identities=32% Similarity=0.507 Sum_probs=22.1
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCC
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCY 254 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~ 254 (530)
-+.|.||+|+|||||+++||....-
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~~p 55 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLETI 55 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEEcCCCchHHHHHHHHHcCCCC
Confidence 3779999999999999999998753
No 446
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=91.28 E-value=0.09 Score=54.18 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.5
Q ss_pred eEEEECCCCCChhHHHHHHHHHcC
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLC 253 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~ 253 (530)
-+.|.||+|+|||||+++||..+.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCcHHHHHHHHHHcCCC
Confidence 477999999999999999999773
No 447
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=91.27 E-value=0.21 Score=56.31 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=21.1
Q ss_pred CceEEEECCCCCChhHHHHHHHHH
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~ 251 (530)
..-++|.||.|+||||+++.+|..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 356889999999999999999874
No 448
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=91.24 E-value=0.094 Score=56.43 Aligned_cols=28 Identities=21% Similarity=0.334 Sum_probs=22.0
Q ss_pred CCCCceEEEECCCCCChhHHHHH--HHHHc
Q 009640 225 RAWKRGYLLYGPPGSGKSSLIAA--MANYL 252 (530)
Q Consensus 225 ~~~~rG~LL~GPPGTGKTsLa~A--iA~~l 252 (530)
++...-++|.||+|+|||||++. ++...
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~ 65 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQFLYNGII 65 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 34456699999999999999999 44443
No 449
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=91.22 E-value=0.12 Score=46.14 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=20.4
Q ss_pred ceEEEECCCCCChhHHHHHHHHH
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~ 251 (530)
--+++.|++|+|||+|+.++.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999864
No 450
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=91.22 E-value=0.1 Score=47.54 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.5
Q ss_pred ceEEEECCCCCChhHHHHHHHHH
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~ 251 (530)
.-+++.|+||+|||+|+.++++.
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999873
No 451
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=91.13 E-value=0.85 Score=48.55 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=18.0
Q ss_pred ceEEEECCCCCChhHHH-HHHHHHc
Q 009640 229 RGYLLYGPPGSGKSSLI-AAMANYL 252 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa-~AiA~~l 252 (530)
+.+|+.+|+|+|||..+ .++...+
T Consensus 159 ~~~ll~apTGsGKT~~~~~~il~~l 183 (508)
T 3fho_A 159 RNMIGQSQSGTGKTAAFALTMLSRV 183 (508)
T ss_dssp CCEEEECCSSTTSHHHHHHHHHHHS
T ss_pred CCEEEECCCCccHHHHHHHHHHHHH
Confidence 67999999999999863 3344443
No 452
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.13 E-value=0.081 Score=51.78 Aligned_cols=25 Identities=36% Similarity=0.489 Sum_probs=22.1
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCC
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCY 254 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~ 254 (530)
-+.|.||.|+|||||++.|+..+..
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~~p 59 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLIEP 59 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Confidence 4779999999999999999998753
No 453
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=91.12 E-value=0.099 Score=46.98 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=19.6
Q ss_pred eEEEECCCCCChhHHHHHHHHH
Q 009640 230 GYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~ 251 (530)
-+++.|+||+|||||+.++.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999999864
No 454
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=91.10 E-value=0.12 Score=46.76 Aligned_cols=23 Identities=17% Similarity=0.210 Sum_probs=20.4
Q ss_pred ceEEEECCCCCChhHHHHHHHHH
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~ 251 (530)
.-+++.|++|+|||||+.++.+.
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999853
No 455
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=91.09 E-value=0.12 Score=46.82 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=20.0
Q ss_pred eEEEECCCCCChhHHHHHHHHH
Q 009640 230 GYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~ 251 (530)
-+++.|++|+|||+|+.++.+.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 456
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=91.08 E-value=0.12 Score=46.93 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=19.9
Q ss_pred eEEEECCCCCChhHHHHHHHHH
Q 009640 230 GYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~ 251 (530)
-+++.|++|+|||+|+.++.+.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 5899999999999999999864
No 457
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=91.08 E-value=0.12 Score=47.30 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.1
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l 252 (530)
.-+++.|+||+|||||+.++.+.-
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999998753
No 458
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=91.05 E-value=0.075 Score=52.02 Aligned_cols=24 Identities=38% Similarity=0.768 Sum_probs=21.4
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l 252 (530)
.-+.|.||.|+|||||++.|+..+
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 347899999999999999999876
No 459
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=91.02 E-value=0.12 Score=46.79 Aligned_cols=22 Identities=32% Similarity=0.652 Sum_probs=20.0
Q ss_pred eEEEECCCCCChhHHHHHHHHH
Q 009640 230 GYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~ 251 (530)
-+++.|++|+|||+|+.++.+.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 460
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.01 E-value=0.11 Score=47.09 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.9
Q ss_pred eEEEECCCCCChhHHHHHHHHHc
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l 252 (530)
-++|.|++|+|||+|+.++.+.-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 461
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=91.00 E-value=0.28 Score=52.25 Aligned_cols=29 Identities=28% Similarity=0.330 Sum_probs=24.8
Q ss_pred EEEECCCCCChhHH-HHHHHHHcCCcEEEE
Q 009640 231 YLLYGPPGSGKSSL-IAAMANYLCYDVYDL 259 (530)
Q Consensus 231 ~LL~GPPGTGKTsL-a~AiA~~l~~~i~~l 259 (530)
.++.|++|||||+| ...|++..+.+++.+
T Consensus 165 ~~Ifg~~g~GKT~l~l~~I~n~~~~dv~~V 194 (513)
T 3oaa_A 165 ELIIGDRQTGKTALAIDAIINQRDSGIKCI 194 (513)
T ss_dssp CEEEESSSSSHHHHHHHHHHTTSSSSCEEE
T ss_pred EEeecCCCCCcchHHHHHHHhhccCCceEE
Confidence 79999999999999 579999887776544
No 462
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=90.99 E-value=0.16 Score=47.92 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=19.0
Q ss_pred eEEEECCCCCChhHHHHHHHH
Q 009640 230 GYLLYGPPGSGKSSLIAAMAN 250 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~ 250 (530)
-++|.|.+|+|||+|+..+..
T Consensus 15 KivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCcCHHHHHHHHHh
Confidence 489999999999999999875
No 463
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=90.95 E-value=0.11 Score=47.17 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.5
Q ss_pred ceEEEECCCCCChhHHHHHHHHH
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~ 251 (530)
--+++.|++|+|||+|+.++.+.
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 36899999999999999999864
No 464
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=90.93 E-value=0.13 Score=47.13 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=20.6
Q ss_pred ceEEEECCCCCChhHHHHHHHHH
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~ 251 (530)
.-+++.|++|+|||+|+.++.+.
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 465
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=90.93 E-value=0.25 Score=49.06 Aligned_cols=33 Identities=27% Similarity=0.356 Sum_probs=25.4
Q ss_pred CceEEEECCCCCChhHHHHHHHHHc---CCcEEEEe
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYL---CYDVYDLE 260 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~ 260 (530)
++-+.+.||+|+||||++..+|..+ +..+.-++
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~ 133 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 3457788999999999999999876 44554444
No 466
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=90.91 E-value=0.094 Score=46.73 Aligned_cols=22 Identities=36% Similarity=0.327 Sum_probs=20.1
Q ss_pred eEEEECCCCCChhHHHHHHHHH
Q 009640 230 GYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~ 251 (530)
-+++.|+||+|||+|+.++++.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 467
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.89 E-value=0.13 Score=47.33 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=20.5
Q ss_pred ceEEEECCCCCChhHHHHHHHHH
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~ 251 (530)
.-+++.|+||+|||+|+.++.+.
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999854
No 468
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=90.89 E-value=0.21 Score=46.86 Aligned_cols=29 Identities=38% Similarity=0.559 Sum_probs=24.0
Q ss_pred EEEECCCCCChhHHHHHHHHHc--CCcEEEE
Q 009640 231 YLLYGPPGSGKSSLIAAMANYL--CYDVYDL 259 (530)
Q Consensus 231 ~LL~GPPGTGKTsLa~AiA~~l--~~~i~~l 259 (530)
+.|-|+.|+||||.++.++..| +++++..
T Consensus 5 I~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~ 35 (205)
T 4hlc_A 5 ITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 35 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHCCCCEEEe
Confidence 5678999999999999999998 4555544
No 469
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=90.88 E-value=0.12 Score=46.19 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=19.9
Q ss_pred ceEEEECCCCCChhHHHHHHHH
Q 009640 229 RGYLLYGPPGSGKSSLIAAMAN 250 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~ 250 (530)
.-++|.|+||+|||+|+.++.+
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 4689999999999999999985
No 470
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=90.87 E-value=0.13 Score=46.72 Aligned_cols=22 Identities=27% Similarity=0.229 Sum_probs=19.7
Q ss_pred eEEEECCCCCChhHHHHHHHHH
Q 009640 230 GYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~ 251 (530)
-++|.|++|+|||+|+..+.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999888764
No 471
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=90.86 E-value=0.13 Score=46.72 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=21.0
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l 252 (530)
--+++.|+||+|||+|+.++.+.-
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 358999999999999999998753
No 472
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.84 E-value=0.098 Score=51.24 Aligned_cols=25 Identities=36% Similarity=0.646 Sum_probs=22.0
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCC
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCY 254 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~ 254 (530)
-+.|.||.|+|||||+++|+..+.-
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~~p 63 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYLSP 63 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCC
Confidence 4779999999999999999997743
No 473
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=90.84 E-value=0.12 Score=47.50 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=20.5
Q ss_pred ceEEEECCCCCChhHHHHHHHHH
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~ 251 (530)
.-++|.|+||+|||+|+.++.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999864
No 474
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=90.79 E-value=0.11 Score=47.49 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=20.5
Q ss_pred ceEEEECCCCCChhHHHHHHHHH
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~ 251 (530)
--++|.|+||+|||+|+.++.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999764
No 475
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=90.78 E-value=0.078 Score=57.52 Aligned_cols=24 Identities=38% Similarity=0.515 Sum_probs=22.0
Q ss_pred eEEEECCCCCChhHHHHHHHHHcC
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLC 253 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~ 253 (530)
-+.|.||+|+|||||+++||..++
T Consensus 371 iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 371 TVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHHhhc
Confidence 478899999999999999999985
No 476
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=90.71 E-value=0.12 Score=46.45 Aligned_cols=23 Identities=35% Similarity=0.405 Sum_probs=20.6
Q ss_pred ceEEEECCCCCChhHHHHHHHHH
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~ 251 (530)
.-+++.|++|+|||||+.++.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999765
No 477
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=90.70 E-value=0.11 Score=52.12 Aligned_cols=29 Identities=31% Similarity=0.260 Sum_probs=23.2
Q ss_pred CceEEEECCCCCChhHHHHHHHHHcCCcEE
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYLCYDVY 257 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l~~~i~ 257 (530)
.+|+||.||+|+|||+++.++.. -|..++
T Consensus 147 g~gvli~G~sG~GKStlal~l~~-~G~~lv 175 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDLIN-KNHLFV 175 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHT-TTCEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH-cCCEEE
Confidence 57999999999999999988754 454443
No 478
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=90.70 E-value=1.3 Score=42.28 Aligned_cols=31 Identities=23% Similarity=0.274 Sum_probs=21.2
Q ss_pred eEEEECCCCCChhHHHHHHHHHc---CCcEEEEe
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYL---CYDVYDLE 260 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~ 260 (530)
=+++|||.|+|||+.+-.++... +..++.+.
T Consensus 21 l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~k 54 (234)
T 2orv_A 21 IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 54 (234)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 36779999999997665555433 55666554
No 479
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=90.69 E-value=0.15 Score=51.23 Aligned_cols=27 Identities=26% Similarity=0.295 Sum_probs=23.0
Q ss_pred CceEEEECCCCCChhHHHHHHHHHcCCc
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMANYLCYD 255 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA~~l~~~ 255 (530)
.+|+||.|++|+|||+++.++... |..
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~-g~~ 170 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR-GHR 170 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT-TCE
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc-CCc
Confidence 468999999999999999999775 443
No 480
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=90.68 E-value=0.13 Score=48.13 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=21.5
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l 252 (530)
.-+++.|++|+|||||+..++..+
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 467888999999999999999876
No 481
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=90.67 E-value=0.078 Score=54.12 Aligned_cols=25 Identities=24% Similarity=0.612 Sum_probs=22.1
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCC
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCY 254 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~ 254 (530)
-+.|.||.|+|||||++.||.....
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~~p 52 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFHVP 52 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSSCC
T ss_pred EEEEECCCCccHHHHHHHHHcCCCC
Confidence 4778999999999999999998753
No 482
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=90.63 E-value=0.1 Score=50.88 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=20.6
Q ss_pred ceEEEECCCCCChhHHHHHHHHH
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~ 251 (530)
..+.|.|+||+|||||+.++.+.
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999764
No 483
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=90.63 E-value=0.13 Score=47.22 Aligned_cols=24 Identities=25% Similarity=0.254 Sum_probs=21.0
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l 252 (530)
.-++|.|+||+|||+|+.++.+.-
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC
Confidence 458999999999999999998743
No 484
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=90.60 E-value=1.1 Score=49.44 Aligned_cols=61 Identities=11% Similarity=0.118 Sum_probs=39.9
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCcEEEEecCccCChHHHHHHH-------------HhcCCCeEEEEcCccch
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCYDVYDLELTKVTDNSELRALL-------------LQTTNRSIIVIEDIDCS 291 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~~i~~l~l~~~~~~~~L~~l~-------------~~~~~~sII~IDeID~~ 291 (530)
-++|.|++|+|||+++-.++..+...++.... +...-..|.+.. .......+|||||.=++
T Consensus 194 ~~vlta~RGRGKSa~lG~~~a~~~~~~~vtAP-~~~a~~~l~~~~~~~i~~~~Pd~~~~~~~~~dlliVDEAAaI 267 (671)
T 2zpa_A 194 VAAVTAARGRGKSALAGQLISRIAGRAIVTAP-AKASTDVLAQFAGEKFRFIAPDALLASDEQADWLVVDEAAAI 267 (671)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSSSCEEEECS-SCCSCHHHHHHHGGGCCBCCHHHHHHSCCCCSEEEEETGGGS
T ss_pred eEEEecCCCCCHHHHHHHHHHHHHhCcEEECC-CHHHHHHHHHHhhCCeEEeCchhhhhCcccCCEEEEEchhcC
Confidence 36899999999999999888888666533332 222222333321 22234679999998776
No 485
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=90.56 E-value=0.056 Score=49.84 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.3
Q ss_pred eEEEECCCCCChhHHHHHHHHH
Q 009640 230 GYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~ 251 (530)
-+.|.|++|+|||||++++++.
T Consensus 28 ~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 28 EVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998753
No 486
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=90.51 E-value=0.17 Score=46.16 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=19.6
Q ss_pred ceEEEECCCCCChhHHHHHHHH
Q 009640 229 RGYLLYGPPGSGKSSLIAAMAN 250 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~ 250 (530)
--+++.|+||+|||+|+.++.+
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCS
T ss_pred cEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999864
No 487
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=90.46 E-value=0.14 Score=47.85 Aligned_cols=25 Identities=44% Similarity=0.538 Sum_probs=21.7
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCC
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCY 254 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~ 254 (530)
-.+|+||.|+|||+++.||.-.++.
T Consensus 25 ~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 4688999999999999999877754
No 488
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=90.46 E-value=0.11 Score=46.84 Aligned_cols=23 Identities=17% Similarity=0.368 Sum_probs=20.4
Q ss_pred ceEEEECCCCCChhHHHHHHHHH
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~ 251 (530)
.-+++.|+||+|||+|+.++.+.
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999753
No 489
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=90.33 E-value=0.27 Score=45.61 Aligned_cols=31 Identities=19% Similarity=0.118 Sum_probs=24.6
Q ss_pred eEEEECCCCCChhHHHHHHHHHc---CCcEEEEe
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYL---CYDVYDLE 260 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l---~~~i~~l~ 260 (530)
-++++||+|+|||+.+..+|..+ +..++.+.
T Consensus 10 i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 46789999999999998888766 66666553
No 490
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.33 E-value=0.14 Score=46.42 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=20.5
Q ss_pred ceEEEECCCCCChhHHHHHHHHH
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~ 251 (530)
--+++.|+||+|||||+.++.+.
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHHcC
Confidence 36899999999999999999873
No 491
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=90.29 E-value=0.091 Score=47.07 Aligned_cols=23 Identities=26% Similarity=0.418 Sum_probs=9.8
Q ss_pred ceEEEECCCCCChhHHHHHHHHH
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~ 251 (530)
.-+++.|+||+|||+|+.++.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEECCCCC------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999998753
No 492
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=90.25 E-value=0.2 Score=54.18 Aligned_cols=32 Identities=31% Similarity=0.322 Sum_probs=25.4
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcC---CcEEEEe
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYLC---YDVYDLE 260 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l~---~~i~~l~ 260 (530)
.-++|.|+||+||||++++++..++ .+++.++
T Consensus 373 ~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld 407 (546)
T 2gks_A 373 FCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLD 407 (546)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred eEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEEC
Confidence 3478899999999999999999874 3455443
No 493
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=90.25 E-value=0.16 Score=46.96 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=21.2
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l 252 (530)
.-+++.|++|+|||+|+.++.+..
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998743
No 494
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=90.25 E-value=0.14 Score=47.45 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.7
Q ss_pred ceEEEECCCCCChhHHHHHHHHH
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANY 251 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~ 251 (530)
--+++.|+||+|||+|+.++++.
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999874
No 495
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.24 E-value=0.16 Score=45.42 Aligned_cols=22 Identities=23% Similarity=0.510 Sum_probs=19.5
Q ss_pred CceEEEECCCCCChhHHHHHHH
Q 009640 228 KRGYLLYGPPGSGKSSLIAAMA 249 (530)
Q Consensus 228 ~rG~LL~GPPGTGKTsLa~AiA 249 (530)
..-+++.|+||+|||||+.++.
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTC
T ss_pred ccEEEEECCCCCCHHHHHHHHh
Confidence 3578999999999999998886
No 496
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=90.19 E-value=0.14 Score=52.44 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=21.5
Q ss_pred eEEEECCCCCChhHHHHHHHHHcC
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLC 253 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~ 253 (530)
-+.|.||||+|||||+.+|+....
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 578999999999999999997665
No 497
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=90.15 E-value=0.13 Score=48.80 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=21.0
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l 252 (530)
.-++|.|++|+|||||+.++.+..
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHcCCC
Confidence 468999999999999999998643
No 498
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=90.15 E-value=0.13 Score=54.55 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=21.8
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc
Q 009640 229 RGYLLYGPPGSGKSSLIAAMANYL 252 (530)
Q Consensus 229 rG~LL~GPPGTGKTsLa~AiA~~l 252 (530)
.-+.|.||.|+|||||++.||+.+
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCcc
Confidence 348899999999999999999987
No 499
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=90.09 E-value=0.11 Score=51.57 Aligned_cols=26 Identities=35% Similarity=0.316 Sum_probs=22.2
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCc
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLCYD 255 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~~~ 255 (530)
-+.|.||+|+|||||+++|+.....+
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~~~ 196 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLKLR 196 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCCCC
T ss_pred eEEEECCCCCcHHHHHHHhccccccc
Confidence 46789999999999999999876543
No 500
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=90.07 E-value=0.077 Score=54.29 Aligned_cols=24 Identities=25% Similarity=0.584 Sum_probs=21.6
Q ss_pred eEEEECCCCCChhHHHHHHHHHcC
Q 009640 230 GYLLYGPPGSGKSSLIAAMANYLC 253 (530)
Q Consensus 230 G~LL~GPPGTGKTsLa~AiA~~l~ 253 (530)
-+.|.||.|+|||||++.||....
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 477999999999999999999774
Done!