BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009641
(530 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224077862|ref|XP_002305441.1| predicted protein [Populus trichocarpa]
gi|222848405|gb|EEE85952.1| predicted protein [Populus trichocarpa]
Length = 518
Score = 820 bits (2117), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/482 (82%), Positives = 436/482 (90%), Gaps = 4/482 (0%)
Query: 1 MEEA----KKKSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQV 56
MEE+ + K++PVLPWMRSPVDVS FE+ PLD LPCLDPRLK+ALQNMG +LFPVQ+
Sbjct: 1 MEESTIAKQNKNVPVLPWMRSPVDVSKFEEYPLDILPCLDPRLKMALQNMGFKTLFPVQI 60
Query: 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116
AVWQETIGPG FERDLCINSPTGSGKTL+YALPIVQ LS RAV+CLRALVVLPTRDLALQ
Sbjct: 61 AVWQETIGPGAFERDLCINSPTGSGKTLAYALPIVQLLSTRAVKCLRALVVLPTRDLALQ 120
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDIL 176
VK VFAAIAPA+GLSVGLAVGQSSIADEISELIK+P+ EAGICYDP+DVLQELQS+VDIL
Sbjct: 121 VKQVFAAIAPAMGLSVGLAVGQSSIADEISELIKKPEHEAGICYDPQDVLQELQSSVDIL 180
Query: 177 VATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDA 236
VATPGRLMDHI T+GFTLEHLCYLVVDETDRLLRE+YQ+WLPTVL+LTR +E+
Sbjct: 181 VATPGRLMDHITTTKGFTLEHLCYLVVDETDRLLRESYQSWLPTVLKLTRPYDESLVPGV 240
Query: 237 STFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT 296
+ FLP A GSLKTIRRCGVERGFK K YPRL KMVLSATLTQDP+KLAQL+LHHPLFLTT
Sbjct: 241 NNFLPCASGSLKTIRRCGVERGFKGKSYPRLAKMVLSATLTQDPSKLAQLNLHHPLFLTT 300
Query: 297 GETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG 356
G+ RY+LPE+LESYKLIC SKLKPLYLVA+LQ LG EKCIVFTSSVESTHRLCTLLN FG
Sbjct: 301 GQRRYQLPEKLESYKLICVSKLKPLYLVAVLQHLGGEKCIVFTSSVESTHRLCTLLNFFG 360
Query: 357 ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYI 416
+L++KIKEYSGLQRQSVRSKTLKAFREG+IQVLVSSDAMTRGMD+EGV N++NYD PAY+
Sbjct: 361 DLKVKIKEYSGLQRQSVRSKTLKAFREGEIQVLVSSDAMTRGMDIEGVRNIINYDMPAYV 420
Query: 417 KTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVY 476
KTY+HRAGRTARAGQ GRC TLL EVKRFKKLLQKADNDSCPI+SIPSS ++SL P Y
Sbjct: 421 KTYVHRAGRTARAGQTGRCITLLRTHEVKRFKKLLQKADNDSCPIYSIPSSSVKSLHPFY 480
Query: 477 KS 478
S
Sbjct: 481 LS 482
>gi|449433605|ref|XP_004134588.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 1-like [Cucumis
sativus]
gi|449490565|ref|XP_004158642.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 1-like [Cucumis
sativus]
Length = 517
Score = 808 bits (2086), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/477 (82%), Positives = 431/477 (90%)
Query: 2 EEAKKKSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQE 61
++ K+K +PVLPWMRSPVDVSL E+CPL+ LP LD RLK ALQNMGISSLFPVQ+AVWQE
Sbjct: 3 DKQKRKRIPVLPWMRSPVDVSLIEECPLEILPMLDHRLKAALQNMGISSLFPVQLAVWQE 62
Query: 62 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121
IGPG F+RDLCINSPTGSGKTL+YALPIVQ LS+R V+CLRALVVLPTRDLALQVK+VF
Sbjct: 63 AIGPGSFDRDLCINSPTGSGKTLAYALPIVQMLSSRTVKCLRALVVLPTRDLALQVKEVF 122
Query: 122 AAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPG 181
+AIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDP+D L ELQS+VDILVATPG
Sbjct: 123 SAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPDDFLVELQSSVDILVATPG 182
Query: 182 RLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLP 241
RLMDHIN T+GFTL+HL YLV+DETDRLLREAYQ+WLPTVLQLT +D+ + + P
Sbjct: 183 RLMDHINFTKGFTLQHLRYLVIDETDRLLREAYQSWLPTVLQLTHADDSSIIFPSYISNP 242
Query: 242 SAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRY 301
+ GSLKTIRR GVERGFK KPYPRL KMVLSATLTQDP KLAQLDLHHPLFLTTG+ RY
Sbjct: 243 CSDGSLKTIRRFGVERGFKGKPYPRLAKMVLSATLTQDPGKLAQLDLHHPLFLTTGKRRY 302
Query: 302 KLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIK 361
KLPE+LESY +ICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLC+LLN F +L +K
Sbjct: 303 KLPEKLESYMMICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCSLLNFFEDLELK 362
Query: 362 IKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIH 421
IKEYSGLQRQS+RSKTL AFR G+IQVLVSSDAMTRGMDVEGV NV+NYD PA+IKTYIH
Sbjct: 363 IKEYSGLQRQSLRSKTLNAFRGGEIQVLVSSDAMTRGMDVEGVKNVINYDMPAFIKTYIH 422
Query: 422 RAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKS 478
RAGRTARAGQ GRCFTLL KDEVKRFKKLLQKADNDSCP+H++PSS IE L+P Y S
Sbjct: 423 RAGRTARAGQSGRCFTLLRKDEVKRFKKLLQKADNDSCPVHNLPSSSIEFLQPTYVS 479
>gi|225443938|ref|XP_002279094.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 1 [Vitis vinifera]
gi|297740757|emb|CBI30939.3| unnamed protein product [Vitis vinifera]
Length = 516
Score = 778 bits (2010), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/479 (81%), Positives = 431/479 (89%), Gaps = 1/479 (0%)
Query: 1 MEEAK-KKSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVW 59
M+EAK KK++PVLPWMRSP+DVSLFE+CPL PCLDPRL+VAL+NMG SSLFPVQVAVW
Sbjct: 1 MKEAKQKKNVPVLPWMRSPIDVSLFEECPLHLFPCLDPRLEVALKNMGFSSLFPVQVAVW 60
Query: 60 QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKD 119
QET+GPG FERDLCINSPTGSGKTL+YALPIV LS+RAV+CLRALVVLPTRDLALQVK+
Sbjct: 61 QETVGPGAFERDLCINSPTGSGKTLAYALPIVNVLSSRAVKCLRALVVLPTRDLALQVKE 120
Query: 120 VFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179
VFAAIAPAVGLSVGLAVGQ+SIADEISELIKRPKLEAGICYDPED+ ELQS+VDILVAT
Sbjct: 121 VFAAIAPAVGLSVGLAVGQTSIADEISELIKRPKLEAGICYDPEDISLELQSSVDILVAT 180
Query: 180 PGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTF 239
PGRLMDHIN T+GFTL+HL YLVVDETDRLLREAYQ+WLPTVLQLTRS +E+ F T
Sbjct: 181 PGRLMDHINTTKGFTLKHLRYLVVDETDRLLREAYQSWLPTVLQLTRSSDESLFPCGKTI 240
Query: 240 LPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET 299
LPS FGS+ TIRRCGVERGFK + YPRLVK+VLSATLTQDP+KLA LDLHHPL LT G+
Sbjct: 241 LPSTFGSMNTIRRCGVERGFKGRSYPRLVKIVLSATLTQDPSKLALLDLHHPLLLTAGQR 300
Query: 300 RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELR 359
RY+LPE+L+S+KLICESKLKPLYLVALL+ LG EKCIVFTSSVES HRLCTLLN FG+L+
Sbjct: 301 RYQLPEKLKSFKLICESKLKPLYLVALLRDLGGEKCIVFTSSVESAHRLCTLLNFFGDLQ 360
Query: 360 IKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTY 419
IKI EYSGLQ Q VRSKTL+ FR GKIQVL+SSD MTRGMDVEGV NV+NYD P +IKTY
Sbjct: 361 IKIGEYSGLQHQRVRSKTLEEFRGGKIQVLISSDGMTRGMDVEGVRNVINYDVPKFIKTY 420
Query: 420 IHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKS 478
IHRAGRTARAGQ GRCFTLL KDE KRFK+LLQKAD+DSCP+HS+ S+ IE+L VY S
Sbjct: 421 IHRAGRTARAGQTGRCFTLLRKDEDKRFKQLLQKADSDSCPVHSVASNSIEALHSVYVS 479
>gi|240255886|ref|NP_193320.6| RNA helicase 1 [Arabidopsis thaliana]
gi|334302879|sp|Q7FGZ2.3|RH1_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 1
gi|332658259|gb|AEE83659.1| RNA helicase 1 [Arabidopsis thaliana]
Length = 522
Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/475 (74%), Positives = 410/475 (86%)
Query: 2 EEAKKKSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQE 61
+E K + V+PWMR+PVDVS E+C LD LPCL+P+LK AL+NMGISSLFPVQVAVW E
Sbjct: 5 KEDKTEMDSVVPWMRAPVDVSNVENCALDTLPCLNPKLKKALENMGISSLFPVQVAVWHE 64
Query: 62 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121
TIGPG FERD+C+NSPTGSGKTLSYALPIVQ L++R VRCLRALVVLPTRDLALQVKDVF
Sbjct: 65 TIGPGGFERDICVNSPTGSGKTLSYALPIVQLLASRPVRCLRALVVLPTRDLALQVKDVF 124
Query: 122 AAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPG 181
AIAPAVGLSVG AVGQSSIA EIS+LIK PKL+AGICYDP+D+ Q L+SAVDILVATPG
Sbjct: 125 DAIAPAVGLSVGSAVGQSSIAGEISQLIKTPKLDAGICYDPDDLSQNLESAVDILVATPG 184
Query: 182 RLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLP 241
RLMDHIN T+GFTLEHL YLVVDETDRLLREAYQ+WLPTVLQLT++ +++ F + F+P
Sbjct: 185 RLMDHINNTKGFTLEHLRYLVVDETDRLLREAYQSWLPTVLQLTQTSDDSLFPSFTPFVP 244
Query: 242 SAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRY 301
SAFGSL+T+RR VERGFK KPYPRLVKMVLSATLTQDP+KL QLDLHHPLF+TTG +RY
Sbjct: 245 SAFGSLQTVRRQSVERGFKGKPYPRLVKMVLSATLTQDPSKLIQLDLHHPLFMTTGGSRY 304
Query: 302 KLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIK 361
+LPE+LE +LICE+ +KP+YLVALL+S EKCI+FTSSVE+T RLC LLN FG+ +IK
Sbjct: 305 RLPEKLECLRLICETGMKPVYLVALLKSWEGEKCIIFTSSVETTRRLCKLLNFFGDPKIK 364
Query: 362 IKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIH 421
KEYSG QS+RSK LKAFR+G IQVLV+SDA+TRGMDV+GV NV+NYD P + KT+IH
Sbjct: 365 AKEYSGGLNQSLRSKELKAFRKGDIQVLVASDALTRGMDVKGVTNVINYDMPPFAKTFIH 424
Query: 422 RAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVY 476
RAGRTARAGQ GRCFTLL EV+RF KLL+K +DSCPI+ IP + ++S+R Y
Sbjct: 425 RAGRTARAGQAGRCFTLLSNHEVRRFSKLLEKVGSDSCPIYPIPPTSLDSIRATY 479
>gi|297804642|ref|XP_002870205.1| hypothetical protein ARALYDRAFT_493299 [Arabidopsis lyrata subsp.
lyrata]
gi|297316041|gb|EFH46464.1| hypothetical protein ARALYDRAFT_493299 [Arabidopsis lyrata subsp.
lyrata]
Length = 522
Score = 728 bits (1878), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/475 (73%), Positives = 407/475 (85%)
Query: 2 EEAKKKSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQE 61
+E K + V+PWMR+PVDVS E+C L+ LPCL+P+LK AL+NMGISSLFPVQVAVW E
Sbjct: 5 KEDKTEIDSVVPWMRAPVDVSNVENCALETLPCLNPKLKKALENMGISSLFPVQVAVWHE 64
Query: 62 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121
TIGPG FERD+C+NSPTGSGKTLSYALPIVQ L++R VRCLRALVVLPTRDLALQVKDVF
Sbjct: 65 TIGPGGFERDICVNSPTGSGKTLSYALPIVQILASRPVRCLRALVVLPTRDLALQVKDVF 124
Query: 122 AAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPG 181
AIAP VGLSVG AVGQSSIA EIS+LIK PKL+AGICYDPED+ Q +SAVDILVATPG
Sbjct: 125 DAIAPTVGLSVGSAVGQSSIAGEISQLIKTPKLDAGICYDPEDLSQNFESAVDILVATPG 184
Query: 182 RLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLP 241
RLMDHIN T+GFTLEHL YLVVDETDRLLREAYQ+WLPTVLQLT++ ++ F + F+P
Sbjct: 185 RLMDHINNTKGFTLEHLRYLVVDETDRLLREAYQSWLPTVLQLTQTSDDGLFPSCTPFVP 244
Query: 242 SAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRY 301
SAFGSL+T+RR VERGFK KPYPRLVKMVLSATLTQDP+KL QLDLHHPLF+TTG +RY
Sbjct: 245 SAFGSLRTVRRQSVERGFKGKPYPRLVKMVLSATLTQDPSKLIQLDLHHPLFMTTGGSRY 304
Query: 302 KLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIK 361
+LPE+LE +LICE+ +KP+YLVALL+S EKCI+FTSSVE+T RLC LLN FG+ +IK
Sbjct: 305 RLPEKLECLRLICETGMKPVYLVALLKSWEGEKCIIFTSSVETTRRLCKLLNFFGDPKIK 364
Query: 362 IKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIH 421
KEYSG QSVRSK LKAFR+G IQVLV+SDA+TRGMDV+GV NV+NYD P + KT+IH
Sbjct: 365 AKEYSGGLNQSVRSKELKAFRKGDIQVLVASDALTRGMDVKGVTNVINYDMPPFAKTFIH 424
Query: 422 RAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVY 476
RAGRTARAGQ GRCFTLL EV+RF KLL+K +DSCPI+ IP + ++S+R Y
Sbjct: 425 RAGRTARAGQAGRCFTLLSNHEVRRFSKLLKKVGSDSCPIYPIPPTSLDSIRATY 479
>gi|255584180|ref|XP_002532829.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223527420|gb|EEF29559.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 469
Score = 701 bits (1810), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/469 (74%), Positives = 396/469 (84%), Gaps = 31/469 (6%)
Query: 1 MEEAK--KKSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAV 58
MEE+K KK++PVLPWMR PVD+ FE+C LD +PCLDPRLKVAL+NMG +SLF VQVAV
Sbjct: 1 MEESKLEKKNVPVLPWMRCPVDIKQFEECSLDLVPCLDPRLKVALENMGFTSLFAVQVAV 60
Query: 59 WQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK 118
WQETIGPG FERDLCIN+PTGSGKTL+YALPI+Q LS R+++CLRAL+VLPTRDLALQVK
Sbjct: 61 WQETIGPGNFERDLCINAPTGSGKTLAYALPIIQMLSTRSIKCLRALIVLPTRDLALQVK 120
Query: 119 DVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV--LQELQSAVDIL 176
VFAA+APAVGLSVGLAVGQSSIA EISELIKRPKLEAGICYD +DV +QELQ++VDIL
Sbjct: 121 QVFAALAPAVGLSVGLAVGQSSIAGEISELIKRPKLEAGICYDRDDVILMQELQTSVDIL 180
Query: 177 VATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDA 236
VATPGRLMDHI T+GFTLEHLCYL + ++ LTRS RF
Sbjct: 181 VATPGRLMDHITNTKGFTLEHLCYLHLLDS-----------------LTRSTLLLRF--- 220
Query: 237 STFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT 296
LP ++ VERGFK K YPRL KMVLSATLTQDP+KL QLDLHHPLFLTT
Sbjct: 221 ---LPIII----VLKDSSVERGFKGKSYPRLAKMVLSATLTQDPSKLVQLDLHHPLFLTT 273
Query: 297 GETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG 356
G++RY+LPE+LESY++ICE KLKPLYLVALLQ+L EKCIVF SSVESTHRLCTLL FG
Sbjct: 274 GQSRYQLPEKLESYRVICEPKLKPLYLVALLQNLVGEKCIVFASSVESTHRLCTLLKFFG 333
Query: 357 ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYI 416
+L++KIKEYSGLQ QSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV NV+NYDKPAYI
Sbjct: 334 DLKVKIKEYSGLQHQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVRNVINYDKPAYI 393
Query: 417 KTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIP 465
KTYIHRAGRTARAGQ+GRCFTLLHK+EV+ F+KLLQKADNDS P++S+P
Sbjct: 394 KTYIHRAGRTARAGQVGRCFTLLHKEEVRHFRKLLQKADNDSFPVYSLP 442
>gi|357491905|ref|XP_003616240.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355517575|gb|AES99198.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 497
Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/479 (69%), Positives = 394/479 (82%), Gaps = 1/479 (0%)
Query: 1 MEEAKKKSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQ 60
M E K++S+P LPWMR PVDV+L + PL +P L P+LK AL++MGIS+LFPVQVAVW
Sbjct: 1 MGEEKQQSIPALPWMRDPVDVTLTQQLPLHSVPSLHPKLKSALEDMGISNLFPVQVAVWH 60
Query: 61 ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV 120
ET+GPG FERD+C+NSPTGSGKTL+YALP+VQ LS R +CLRALVV+PTRDLALQVK V
Sbjct: 61 ETVGPGNFERDICVNSPTGSGKTLAYALPLVQMLSGRVTKCLRALVVVPTRDLALQVKQV 120
Query: 121 FAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV-LQELQSAVDILVAT 179
F A+A +GL VGLAVGQSS+ADEISEL++ P + G CYDP + L QS VDILVAT
Sbjct: 121 FDAVASPLGLRVGLAVGQSSLADEISELVEMPARDIGTCYDPHCISLPRFQSKVDILVAT 180
Query: 180 PGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTF 239
PGRLMDHIN T GFTLEHL YLVVDETDRLLREAYQ+WLPTVL+L +S+++ +++F
Sbjct: 181 PGRLMDHINTTIGFTLEHLYYLVVDETDRLLREAYQSWLPTVLELIQSNDDGFSLPSASF 240
Query: 240 LPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET 299
P + +L+T RRCGVERGFKDKPYPRL KMVLSATLTQDP +L QL+LHHPL L G+
Sbjct: 241 FPCSASALRTRRRCGVERGFKDKPYPRLAKMVLSATLTQDPGRLIQLNLHHPLLLKAGQM 300
Query: 300 RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELR 359
RY+LPE LESYKLICE K+KPLYL+ALL+SLGEEKC+VFT SV+STHRLC LLN F +LR
Sbjct: 301 RYRLPENLESYKLICEKKVKPLYLIALLKSLGEEKCLVFTKSVDSTHRLCQLLNCFEDLR 360
Query: 360 IKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTY 419
I IKEYS LQ Q VRSKTL FR+G QVL+SSDA+TRGMDVEGV NV+NYD P +IKT+
Sbjct: 361 IDIKEYSSLQHQRVRSKTLNEFRKGVFQVLLSSDALTRGMDVEGVRNVINYDVPKFIKTH 420
Query: 420 IHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKS 478
+HRAGRTARAGQ GRCFTL+ +DEV+RFKKL+ KA+ SC H +PSS IE+L Y+S
Sbjct: 421 VHRAGRTARAGQTGRCFTLMSEDEVRRFKKLIGKAEGGSCLDHIVPSSQIEALNTTYES 479
>gi|5281020|emb|CAB45993.1| ATP-dependent RNA helicase like protein [Arabidopsis thaliana]
gi|7268333|emb|CAB78627.1| ATP-dependent RNA helicase like protein [Arabidopsis thaliana]
Length = 474
Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/431 (75%), Positives = 376/431 (87%)
Query: 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 105
MGISSLFPVQVAVW ETIGPG FERD+C+NSPTGSGKTLSYALPIVQ L++R VRCLRAL
Sbjct: 1 MGISSLFPVQVAVWHETIGPGGFERDICVNSPTGSGKTLSYALPIVQLLASRPVRCLRAL 60
Query: 106 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 165
VVLPTRDLALQVKDVF AIAPAVGLSVG AVGQSSIA EIS+LIK PKL+AGICYDP+D+
Sbjct: 61 VVLPTRDLALQVKDVFDAIAPAVGLSVGSAVGQSSIAGEISQLIKTPKLDAGICYDPDDL 120
Query: 166 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 225
Q L+SAVDILVATPGRLMDHIN T+GFTLEHL YLVVDETDRLLREAYQ+WLPTVLQLT
Sbjct: 121 SQNLESAVDILVATPGRLMDHINNTKGFTLEHLRYLVVDETDRLLREAYQSWLPTVLQLT 180
Query: 226 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 285
++ +++ F + F+PSAFGSL+T+RR VERGFK KPYPRLVKMVLSATLTQDP+KL Q
Sbjct: 181 QTSDDSLFPSFTPFVPSAFGSLQTVRRQSVERGFKGKPYPRLVKMVLSATLTQDPSKLIQ 240
Query: 286 LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVEST 345
LDLHHPLF+TTG +RY+LPE+LE +LICE+ +KP+YLVALL+S EKCI+FTSSVE+T
Sbjct: 241 LDLHHPLFMTTGGSRYRLPEKLECLRLICETGMKPVYLVALLKSWEGEKCIIFTSSVETT 300
Query: 346 HRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN 405
RLC LLN FG+ +IK KEYSG QS+RSK LKAFR+G IQVLV+SDA+TRGMDV+GV
Sbjct: 301 RRLCKLLNFFGDPKIKAKEYSGGLNQSLRSKELKAFRKGDIQVLVASDALTRGMDVKGVT 360
Query: 406 NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIP 465
NV+NYD P + KT+IHRAGRTARAGQ GRCFTLL EV+RF KLL+K +DSCPI+ IP
Sbjct: 361 NVINYDMPPFAKTFIHRAGRTARAGQAGRCFTLLSNHEVRRFSKLLEKVGSDSCPIYPIP 420
Query: 466 SSLIESLRPVY 476
+ ++S+R Y
Sbjct: 421 PTSLDSIRATY 431
>gi|115449213|ref|NP_001048386.1| Os02g0795900 [Oryza sativa Japonica Group]
gi|122170850|sp|Q0DWT8.1|RH1_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 1
gi|113537917|dbj|BAF10300.1| Os02g0795900 [Oryza sativa Japonica Group]
gi|215740532|dbj|BAG97188.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 521
Score = 638 bits (1646), Expect = e-180, Method: Compositional matrix adjust.
Identities = 311/471 (66%), Positives = 370/471 (78%), Gaps = 3/471 (0%)
Query: 9 MPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLF 68
+P LPWMR+PVD+ F CP+ HLP LDPRL LQ MGI S FPVQVA W ETIGPG F
Sbjct: 18 VPHLPWMRNPVDIDSFSGCPVAHLPRLDPRLVKPLQRMGIESFFPVQVAAWLETIGPGAF 77
Query: 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128
ERD+CINSPTGSGKTL+YALPIVQ L+ R VRCLRALVVLPTRDLALQVK+VF AIAP V
Sbjct: 78 ERDICINSPTGSGKTLAYALPIVQMLATRKVRCLRALVVLPTRDLALQVKEVFDAIAPVV 137
Query: 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHIN 188
GLSVG AVGQSSIADE+S LI++ K D E + E Q+ VDILVATPGRLMDHI+
Sbjct: 138 GLSVGSAVGQSSIADEVSNLIEKSKQGLFPSLDEEYIQMEPQTKVDILVATPGRLMDHIS 197
Query: 189 ATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR-FSDASTFLPSAFGSL 247
T+GF+LEHL YLVVDETDR+LREAYQ+WLPTV+QLTRS ++N +SD + + L
Sbjct: 198 MTKGFSLEHLQYLVVDETDRMLREAYQSWLPTVIQLTRSSDQNHSWSDMNG--ETLLHPL 255
Query: 248 KTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 307
TIRR GVERGFK K +PRL K+VLSATLTQDP+KL+QL+L HPL L +G+ RY++P +L
Sbjct: 256 TTIRRSGVERGFKGKSFPRLAKIVLSATLTQDPSKLSQLELQHPLLLNSGKKRYRIPTKL 315
Query: 308 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 367
+SYKL+C+S LKPL L+ LLQ L EKC+VFTSSVES+HRL TLL F +L K EYS
Sbjct: 316 QSYKLVCKSNLKPLSLIVLLQELRGEKCLVFTSSVESSHRLSTLLEFFEDLPFKFSEYSR 375
Query: 368 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 427
LQR+S R KTL AF+EGKI VL+ +D M RG+ ++G+ V+NYD P Y+KTYIHRAGRTA
Sbjct: 376 LQRESTRRKTLDAFKEGKIDVLIGTDRMARGIHIDGLRYVINYDMPPYVKTYIHRAGRTA 435
Query: 428 RAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKS 478
RAG+ G CFT L K EVK F K+L+KADN SC +HS+P +E+LRPV+ S
Sbjct: 436 RAGESGSCFTFLRKHEVKAFDKMLKKADNSSCSLHSLPEESVETLRPVFSS 486
>gi|47497023|dbj|BAD19076.1| putative DEAD box-like RNA helicase [Oryza sativa Japonica Group]
gi|47497232|dbj|BAD19277.1| putative DEAD box-like RNA helicase [Oryza sativa Japonica Group]
Length = 517
Score = 638 bits (1645), Expect = e-180, Method: Compositional matrix adjust.
Identities = 311/472 (65%), Positives = 370/472 (78%), Gaps = 3/472 (0%)
Query: 9 MPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLF 68
+P LPWMR+PVD+ F CP+ HLP LDPRL LQ MGI S FPVQVA W ETIGPG F
Sbjct: 14 VPHLPWMRNPVDIDSFSGCPVAHLPRLDPRLVKPLQRMGIESFFPVQVAAWLETIGPGAF 73
Query: 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128
ERD+CINSPTGSGKTL+YALPIVQ L+ R VRCLRALVVLPTRDLALQVK+VF AIAP V
Sbjct: 74 ERDICINSPTGSGKTLAYALPIVQMLATRKVRCLRALVVLPTRDLALQVKEVFDAIAPVV 133
Query: 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHIN 188
GLSVG AVGQSSIADE+S LI++ K D E + E Q+ VDILVATPGRLMDHI+
Sbjct: 134 GLSVGSAVGQSSIADEVSNLIEKSKQGLFPSLDEEYIQMEPQTKVDILVATPGRLMDHIS 193
Query: 189 ATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR-FSDASTFLPSAFGSL 247
T+GF+LEHL YLVVDETDR+LREAYQ+WLPTV+QLTRS ++N +SD + + L
Sbjct: 194 MTKGFSLEHLQYLVVDETDRMLREAYQSWLPTVIQLTRSSDQNHSWSDMNG--ETLLHPL 251
Query: 248 KTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 307
TIRR GVERGFK K +PRL K+VLSATLTQDP+KL+QL+L HPL L +G+ RY++P +L
Sbjct: 252 TTIRRSGVERGFKGKSFPRLAKIVLSATLTQDPSKLSQLELQHPLLLNSGKKRYRIPTKL 311
Query: 308 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 367
+SYKL+C+S LKPL L+ LLQ L EKC+VFTSSVES+HRL TLL F +L K EYS
Sbjct: 312 QSYKLVCKSNLKPLSLIVLLQELRGEKCLVFTSSVESSHRLSTLLEFFEDLPFKFSEYSR 371
Query: 368 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 427
LQR+S R KTL AF+EGKI VL+ +D M RG+ ++G+ V+NYD P Y+KTYIHRAGRTA
Sbjct: 372 LQRESTRRKTLDAFKEGKIDVLIGTDRMARGIHIDGLRYVINYDMPPYVKTYIHRAGRTA 431
Query: 428 RAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSV 479
RAG+ G CFT L K EVK F K+L+KADN SC +HS+P +E+LRPV+ S
Sbjct: 432 RAGESGSCFTFLRKHEVKAFDKMLKKADNSSCSLHSLPEESVETLRPVFSSA 483
>gi|242066828|ref|XP_002454703.1| hypothetical protein SORBIDRAFT_04g035895 [Sorghum bicolor]
gi|241934534|gb|EES07679.1| hypothetical protein SORBIDRAFT_04g035895 [Sorghum bicolor]
Length = 519
Score = 635 bits (1637), Expect = e-179, Method: Compositional matrix adjust.
Identities = 323/512 (63%), Positives = 379/512 (74%), Gaps = 13/512 (2%)
Query: 2 EEAKKKSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQE 61
EE +P LPWMR PVD+ F CP+ LP LDPRL ALQ MGI S FPVQ A W E
Sbjct: 10 EEGPADRVPHLPWMRCPVDIDTFSGCPVTQLPRLDPRLAEALQRMGIESFFPVQEAAWLE 69
Query: 62 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121
TIGPG FERD+CINSPTGSGKTL+YALPIVQ L R VRCLRALVVLPTRDLALQVK+VF
Sbjct: 70 TIGPGAFERDICINSPTGSGKTLAYALPIVQMLCKRKVRCLRALVVLPTRDLALQVKEVF 129
Query: 122 AAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPG 181
AIAP VGLSVG AVGQSSIADE+S L+++PK E D E V E Q+ +DILVATPG
Sbjct: 130 DAIAPVVGLSVGSAVGQSSIADEVSRLVQKPKQEFYPTIDEEYVQMEPQTKIDILVATPG 189
Query: 182 RLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRS---DNENRFSDAST 238
RLMDHIN T GF+LEHL YLV+DETDR+LREAYQ+WLPTV+QLT S D+ D T
Sbjct: 190 RLMDHINMTNGFSLEHLQYLVIDETDRMLREAYQSWLPTVIQLTHSIGQDHSWHDIDGKT 249
Query: 239 FLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE 298
L L TIRR GVERGFK K YPRL K+VLSATLTQDP+KL+QL+LHHPL L +G+
Sbjct: 250 LL----HPLTTIRRSGVERGFKGKCYPRLAKIVLSATLTQDPSKLSQLELHHPLLLNSGK 305
Query: 299 TRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGEL 358
RY++P +LESYKLIC+S LKPL L+ LLQ L KC+VFTSSVES+HRL TLL F L
Sbjct: 306 KRYRIPTKLESYKLICKSNLKPLSLIVLLQELQGNKCLVFTSSVESSHRLSTLLCFFENL 365
Query: 359 RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKT 418
K EYS LQR+S R KTL+AF+EGKI VL+ +D M RG+ ++G+ V+NYD P Y+KT
Sbjct: 366 PFKFSEYSRLQRESTRRKTLEAFKEGKIDVLIGTDRMARGIHIDGLRYVINYDMPPYVKT 425
Query: 419 YIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKS 478
YIHRAGRTARAG+ G CFT L K EVK F K+L+KADN SC +HS+P IE+LRP + S
Sbjct: 426 YIHRAGRTARAGESGSCFTFLRKHEVKTFDKMLKKADNASCSLHSLPEESIETLRPTFSS 485
Query: 479 ----VRGGISDEAFWK--VGCDLHGVNRVRRS 504
+ + EA K +G + G ++ +RS
Sbjct: 486 ALRKLEESLESEAAKKSNLGDKMPGASKRKRS 517
>gi|357137417|ref|XP_003570297.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 1-like [Brachypodium
distachyon]
Length = 522
Score = 629 bits (1622), Expect = e-177, Method: Compositional matrix adjust.
Identities = 314/481 (65%), Positives = 365/481 (75%), Gaps = 7/481 (1%)
Query: 2 EEAKKKSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQE 61
+E +P LPWMR PVD+ F CP+ LP LDPRL A+Q MGI S F VQVA W E
Sbjct: 12 DEGPSSRVPHLPWMRYPVDIDGFSGCPVARLPRLDPRLAEAVQRMGIESFFSVQVATWLE 71
Query: 62 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121
TIGPG FERD+CINSPTGSGKTL+YALPIVQ LS R VRCLRALVVLPTRDLALQVK+VF
Sbjct: 72 TIGPGAFERDICINSPTGSGKTLAYALPIVQMLSTRKVRCLRALVVLPTRDLALQVKEVF 131
Query: 122 AAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPG 181
AIAP VGLSV AVGQSSIADEIS+LIK+ K E D E V E Q+ VDILVATPG
Sbjct: 132 DAIAPVVGLSVASAVGQSSIADEISDLIKKSKQELYATLDEEYVEMEPQTKVDILVATPG 191
Query: 182 RLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN---RFSDAST 238
RLMDHIN T+GF+LEHL YLVVDETDR+LREAYQ+WLPTV+Q TRS N+N R + T
Sbjct: 192 RLMDHINMTKGFSLEHLQYLVVDETDRMLREAYQSWLPTVIQFTRSTNQNHPWRDTAGQT 251
Query: 239 FLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE 298
L L T RR GVERGFK K YPRL K+V SATLTQDP+KL+QL+LHHPL L +G+
Sbjct: 252 LL----HPLTTNRRSGVERGFKGKCYPRLAKIVCSATLTQDPSKLSQLELHHPLLLNSGK 307
Query: 299 TRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGEL 358
RY++P +LESYKLIC + LKPL L+ LLQ L EKC+VFTSSVES+HRL TLL F +L
Sbjct: 308 KRYRIPTKLESYKLICTTNLKPLCLIVLLQELHGEKCLVFTSSVESSHRLSTLLGFFEDL 367
Query: 359 RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKT 418
K E+S LQR+S R KTL F+EGKI VL+ +D M RG+ ++G+ V+NYD P Y+KT
Sbjct: 368 PFKFSEFSRLQRESTRRKTLADFKEGKIDVLIGTDIMARGIHIDGLKYVINYDMPPYVKT 427
Query: 419 YIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKS 478
YIHRAGRTARAG+ G CFTLL K EVK F K+L+KAD+ SC + S+P IE+ RPV+ S
Sbjct: 428 YIHRAGRTARAGESGSCFTLLRKHEVKTFDKMLKKADDSSCSLRSLPDESIETFRPVFSS 487
Query: 479 V 479
Sbjct: 488 A 488
>gi|413939310|gb|AFW73861.1| putative DEAD-box ATP-dependent RNA helicase family protein isoform
1 [Zea mays]
gi|413939311|gb|AFW73862.1| putative DEAD-box ATP-dependent RNA helicase family protein isoform
2 [Zea mays]
Length = 523
Score = 627 bits (1616), Expect = e-177, Method: Compositional matrix adjust.
Identities = 317/511 (62%), Positives = 376/511 (73%), Gaps = 13/511 (2%)
Query: 2 EEAKKKSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQE 61
EE +P LPWMR PVD+ F P+ LP LDPRL ALQ MGI S FPVQ A W E
Sbjct: 10 EEGPADRVPHLPWMRYPVDIDTFSGRPVTQLPRLDPRLVEALQRMGIESFFPVQEAAWLE 69
Query: 62 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121
TIGPG FERD+CINSPTGSGKTL+YALPIVQ L R VRCLRALVVLPTRDLALQVK+VF
Sbjct: 70 TIGPGAFERDICINSPTGSGKTLAYALPIVQMLCTRKVRCLRALVVLPTRDLALQVKEVF 129
Query: 122 AAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPG 181
AIAP VGLSVG AVGQSSIADE+S L+++P+ E D E V E ++ +DILVATPG
Sbjct: 130 DAIAPVVGLSVGSAVGQSSIADEVSSLVQKPRQEFYPTIDKEYVQMEPRTKIDILVATPG 189
Query: 182 RLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRS---DNENRFSDAST 238
RLMDHIN T GF+LEHL YLV+DETDR+LREAYQ+WLPTV+QLT S D+ D T
Sbjct: 190 RLMDHINMTNGFSLEHLQYLVIDETDRMLREAYQSWLPTVIQLTHSIGQDHSCHDIDGKT 249
Query: 239 FLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE 298
L L TIRR GVERGFK K YPRL K+VLSATLTQDP+KL+QL+LHHPL L +G+
Sbjct: 250 LL----HPLTTIRRSGVERGFKSKCYPRLAKIVLSATLTQDPSKLSQLELHHPLLLNSGK 305
Query: 299 TRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGEL 358
RY++P +LESYKLIC+S LKPL L+ LLQ L KC+VFTSSVES+HRL TLL F L
Sbjct: 306 KRYRIPTKLESYKLICKSNLKPLSLIVLLQELQGNKCLVFTSSVESSHRLSTLLRFFENL 365
Query: 359 RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKT 418
K EYS LQR+S R KTL+AF+EGKI VL+ +D M RG+ ++G+ V+NYD P Y+KT
Sbjct: 366 PFKFSEYSRLQRESTRRKTLEAFKEGKIDVLIGTDRMARGIHIDGLRYVINYDMPPYVKT 425
Query: 419 YIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVY-- 476
YIHRAGRTARAG+ G CFT L K EVK F K+L+KADN C +HS+P IE+LRP +
Sbjct: 426 YIHRAGRTARAGESGSCFTFLRKHEVKTFDKMLKKADNAGCNLHSLPEESIETLRPAFSG 485
Query: 477 --KSVRGGISDEAF--WKVGCDLHGVNRVRR 503
+ + G + EA + +G G ++ +R
Sbjct: 486 ALRKLEGALESEAVKKYDLGDKTPGASKRKR 516
>gi|125541460|gb|EAY87855.1| hypothetical protein OsI_09277 [Oryza sativa Indica Group]
Length = 499
Score = 624 bits (1609), Expect = e-176, Method: Compositional matrix adjust.
Identities = 304/470 (64%), Positives = 360/470 (76%), Gaps = 19/470 (4%)
Query: 9 MPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLF 68
+P LPWMR+PVD+ F CP+ HLP LDPRL LQ MGI S FPVQVA W ETIGPG F
Sbjct: 14 VPHLPWMRNPVDIDSFSGCPVAHLPRLDPRLVKPLQRMGIESFFPVQVAAWLETIGPGAF 73
Query: 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128
ERD+CINSPTGSGKTL+YALPIVQ L+ R VRCLRALVVLPTRDLALQVK+VF AIAP V
Sbjct: 74 ERDICINSPTGSGKTLAYALPIVQMLATRKVRCLRALVVLPTRDLALQVKEVFDAIAPVV 133
Query: 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHIN 188
GLSVG AVGQSSIADE+S LI++ K D E + E Q+ VDILVATPGRLMDHI+
Sbjct: 134 GLSVGSAVGQSSIADEVSNLIEKSKQGLFPSLDEEYIQMEPQTKVDILVATPGRLMDHIS 193
Query: 189 ATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLK 248
T+GF+LEHL YLVVDETDR+LREAYQ+WLPTV+QLTRS ++N
Sbjct: 194 MTKGFSLEHLQYLVVDETDRMLREAYQSWLPTVIQLTRSSDQN----------------- 236
Query: 249 TIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLE 308
GVERGFK K +PRL K+VLSATLTQDP+KL+QL+L HPL L +G+ RY++P +L+
Sbjct: 237 --HSWGVERGFKGKSFPRLAKIVLSATLTQDPSKLSQLELQHPLLLNSGKKRYRIPTKLQ 294
Query: 309 SYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL 368
SYKL+C+S LKPL L+ LLQ L EKC+VFTSSVES+HRL TLL F +L K EYS L
Sbjct: 295 SYKLVCKSNLKPLSLIVLLQELRGEKCLVFTSSVESSHRLSTLLEFFEDLPFKFSEYSRL 354
Query: 369 QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 428
QR+S R KTL AF+EGKI VL+ +D M RG+ ++G+ V+NYD P Y+KTYIHRAGRTAR
Sbjct: 355 QRESTRRKTLDAFKEGKIDVLIGTDRMARGIHIDGLRYVINYDMPPYVKTYIHRAGRTAR 414
Query: 429 AGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKS 478
AG+ G CFT L K EVK F K+L+KADN SC +HS+P +E+LRPV+ S
Sbjct: 415 AGESGSCFTFLRKHEVKAFDKMLKKADNSSCSLHSLPEESVETLRPVFSS 464
>gi|125584003|gb|EAZ24934.1| hypothetical protein OsJ_08714 [Oryza sativa Japonica Group]
Length = 499
Score = 624 bits (1609), Expect = e-176, Method: Compositional matrix adjust.
Identities = 304/471 (64%), Positives = 360/471 (76%), Gaps = 19/471 (4%)
Query: 9 MPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLF 68
+P LPWMR+PVD+ F CP+ HLP LDPRL LQ MGI S FPVQVA W ETIGPG F
Sbjct: 14 VPHLPWMRNPVDIDSFSGCPVAHLPRLDPRLVKPLQRMGIESFFPVQVAAWLETIGPGAF 73
Query: 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128
ERD+CINSPTGSGKTL+YALPIVQ L+ R VRCLRALVVLPTRDLALQVK+VF AIAP V
Sbjct: 74 ERDICINSPTGSGKTLAYALPIVQMLATRKVRCLRALVVLPTRDLALQVKEVFDAIAPVV 133
Query: 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHIN 188
GLSVG AVGQSSIADE+S LI++ K D E + E Q+ VDILVATPGRLMDHI+
Sbjct: 134 GLSVGSAVGQSSIADEVSNLIEKSKQGLFPSLDEEYIQMEPQTKVDILVATPGRLMDHIS 193
Query: 189 ATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLK 248
T+GF+LEHL YLVVDETDR+LREAYQ+WLPTV+QLTRS ++N
Sbjct: 194 MTKGFSLEHLQYLVVDETDRMLREAYQSWLPTVIQLTRSSDQN----------------- 236
Query: 249 TIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLE 308
GVERGFK K +PRL K+VLSATLTQDP+KL+QL+L HPL L +G+ RY++P +L+
Sbjct: 237 --HSWGVERGFKGKSFPRLAKIVLSATLTQDPSKLSQLELQHPLLLNSGKKRYRIPTKLQ 294
Query: 309 SYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL 368
SYKL+C+S LKPL L+ LLQ L EKC+VFTSSVES+HRL TLL F +L K EYS L
Sbjct: 295 SYKLVCKSNLKPLSLIVLLQELRGEKCLVFTSSVESSHRLSTLLEFFEDLPFKFSEYSRL 354
Query: 369 QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 428
QR+S R KTL AF+EGKI VL+ +D M RG+ ++G+ V+NYD P Y+KTYIHRAGRTAR
Sbjct: 355 QRESTRRKTLDAFKEGKIDVLIGTDRMARGIHIDGLRYVINYDMPPYVKTYIHRAGRTAR 414
Query: 429 AGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSV 479
AG+ G CFT L K EVK F K+L+KADN SC +HS+P +E+LRPV+ S
Sbjct: 415 AGESGSCFTFLRKHEVKAFDKMLKKADNSSCSLHSLPEESVETLRPVFSSA 465
>gi|3445416|emb|CAA72041.1| DEAD box-like RNA helicase [Arabidopsis thaliana]
Length = 450
Score = 624 bits (1608), Expect = e-176, Method: Compositional matrix adjust.
Identities = 302/407 (74%), Positives = 352/407 (86%)
Query: 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129
RD+C+NSPTGSGKTLSYALPIVQ L++R VRCLRALVVLPTRDLALQVKDVF AIAPAVG
Sbjct: 1 RDICVNSPTGSGKTLSYALPIVQLLASRPVRCLRALVVLPTRDLALQVKDVFDAIAPAVG 60
Query: 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA 189
LSVG AVGQSSIA EIS+LIK PKL+AGICYDP+D+ Q L+SAVDILVATPGRLMDHIN
Sbjct: 61 LSVGSAVGQSSIAGEISQLIKTPKLDAGICYDPDDLSQNLESAVDILVATPGRLMDHINN 120
Query: 190 TRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKT 249
T+GFTLEHL YLVVDETDRLLREAYQ+WLPTVLQLT++ +++ F + F+PSAFGSL+T
Sbjct: 121 TKGFTLEHLRYLVVDETDRLLREAYQSWLPTVLQLTQTSDDSLFPSFTPFVPSAFGSLQT 180
Query: 250 IRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLES 309
+RR VERGFK KPYPRLVKMVLSATLTQDP+KL QLDLHHPLF+TTG +RY+LPE+LE
Sbjct: 181 VRRQSVERGFKGKPYPRLVKMVLSATLTQDPSKLIQLDLHHPLFMTTGGSRYRLPEKLEC 240
Query: 310 YKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQ 369
+LICE+ +KP+YL ALL+S EKCI+FTSS E+T RLC LLN FG+ +IK KEYSG
Sbjct: 241 LRLICETGMKPVYLGALLKSWEGEKCIIFTSSGETTRRLCKLLNFFGDPKIKAKEYSGGL 300
Query: 370 RQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA 429
QS+RSK LKAFR+G IQVLV+SDA+TRGMDV+GV NV+NYD P + KT+IHRAGRTARA
Sbjct: 301 NQSLRSKELKAFRKGDIQVLVASDALTRGMDVKGVTNVINYDMPPFAKTFIHRAGRTARA 360
Query: 430 GQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVY 476
GQ GRCFTLL EV+RF KLL+K +DSCPI+ IP + ++S+R Y
Sbjct: 361 GQAGRCFTLLSNHEVRRFSKLLKKVGSDSCPIYPIPPTSLDSIRATY 407
>gi|356526389|ref|XP_003531800.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase
1-like [Glycine max]
Length = 617
Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust.
Identities = 293/471 (62%), Positives = 344/471 (73%), Gaps = 47/471 (9%)
Query: 11 VLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQ-NMGISSLFPVQVAVWQETIGPGLFE 69
VLPWMR PVD++ + P+ +P + RL+ L+ NMGIS LFPVQVA+WQET+GPG FE
Sbjct: 166 VLPWMRHPVDITRCPELPVCSVPLMKRRLQSVLEENMGISKLFPVQVALWQETVGPGDFE 225
Query: 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129
RDLCINSPTGSGKTL+YALPIVQ L LRALVV+PTRDLALQVK VF A+A +G
Sbjct: 226 RDLCINSPTGSGKTLAYALPIVQNLFTNPGGRLRALVVVPTRDLALQVKRVFDALASPLG 285
Query: 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL--QSAVDILVATPGRLMDHI 187
L +GLA GQSS+ E+S LI P + G DP L L QS VDILVATPGRL+DH+
Sbjct: 286 LRIGLAAGQSSLRHELSSLIYLPGEDDGP--DP-GFLSPLWFQSKVDILVATPGRLVDHV 342
Query: 188 NATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSL 247
N +L+HL YLVVDE DRLLRE YQ+WLPTVL+LT+S
Sbjct: 343 NK---LSLKHLRYLVVDEADRLLREDYQSWLPTVLKLTQS-------------------- 379
Query: 248 KTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 307
RL K+VLSATLT+DP +LAQL+LHHPLFL+ G+ RY+LPE L
Sbjct: 380 ------------------RLAKIVLSATLTRDPGRLAQLNLHHPLFLSAGKMRYRLPEYL 421
Query: 308 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 367
E YKLICE K+KPLYLVALL+SLGEEKCIVFT SVESTH LC LLN FG+L+I IKE+SG
Sbjct: 422 ECYKLICERKVKPLYLVALLKSLGEEKCIVFTRSVESTHHLCKLLNCFGDLKIGIKEFSG 481
Query: 368 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 427
L+ Q VRSKT+ FR G+ QVLVSSDAMTRGMDVEGV NV+NYD P Y KTY+HRAGRTA
Sbjct: 482 LKHQRVRSKTVGEFRRGEFQVLVSSDAMTRGMDVEGVRNVINYDMPKYTKTYVHRAGRTA 541
Query: 428 RAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKS 478
RAGQ GRCFTL+ KDEV RFKKL++KA+ C +++PSSLIE+L Y+S
Sbjct: 542 RAGQTGRCFTLMSKDEVXRFKKLMKKAEASDCLEYTVPSSLIEALHSTYQS 592
>gi|302794133|ref|XP_002978831.1| hypothetical protein SELMODRAFT_109199 [Selaginella moellendorffii]
gi|300153640|gb|EFJ20278.1| hypothetical protein SELMODRAFT_109199 [Selaginella moellendorffii]
Length = 513
Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust.
Identities = 276/476 (57%), Positives = 343/476 (72%), Gaps = 13/476 (2%)
Query: 7 KSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPG 66
K+ PVL WMR P+DV+ FE+ LD +P L P L +L+N+GI SLFPVQ AVW ET+GPG
Sbjct: 3 KAPPVLQWMRQPLDVNSFEEQSLDSVPFLHPGLMESLRNVGIHSLFPVQAAVWHETVGPG 62
Query: 67 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126
RDL I+SPTGSGKTL+Y+LPI Q+LS +R LRAL+V+PTRDLA+QVK VF AIAP
Sbjct: 63 GGARDLSISSPTGSGKTLAYSLPIAQSLSQCLLRRLRALIVVPTRDLAMQVKQVFDAIAP 122
Query: 127 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD----PEDVLQELQSAVDILVATPGR 182
+VGLSVG+AVGQ+S+A E S+L+ P + C+ D L E S VDILVATPGR
Sbjct: 123 SVGLSVGIAVGQTSVAAEASQLVLFPG-KIDTCFRELHLASDNLAE--SRVDILVATPGR 179
Query: 183 LMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPS 242
LMDHI T GFTLEHL YLVVDETDRLLREAYQ WLPTVL+ + N FS + P
Sbjct: 180 LMDHIQNTPGFTLEHLQYLVVDETDRLLREAYQEWLPTVLEAASAKN---FSPSDDSNP- 235
Query: 243 AFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL--FLTTGETR 300
GS++TIRR +ERG K PRL K+++SATLT+DP K+AQL L+HPL L+T +
Sbjct: 236 GIGSVRTIRRSCLERGIKGCVVPRLQKIIVSATLTRDPAKIAQLRLYHPLSVALSTSDNL 295
Query: 301 YKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRI 360
YKLPE+L SY +IC+++ KPL LV LL SLG+++ ++FTSSV +THRL T L F +L
Sbjct: 296 YKLPEQLRSYTIICKAQQKPLKLVTLLHSLGDQRTVIFTSSVSNTHRLSTFLACFEDLPF 355
Query: 361 KIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYI 420
+ EYS Q Q RSK L AFR G+ QVLV+SDAM RGMDVEGV +++NYD P + +TY+
Sbjct: 356 RAVEYSSFQHQLARSKALAAFRAGEAQVLVASDAMARGMDVEGVTHIINYDMPPFARTYV 415
Query: 421 HRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVY 476
HR GRTARAG+ G CFTLL K+EV+ FK +L K N SC + + S + LRP Y
Sbjct: 416 HRVGRTARAGRSGSCFTLLRKEEVRYFKSILAKVQNSSCKTYKVSSESTKELRPRY 471
>gi|302787757|ref|XP_002975648.1| hypothetical protein SELMODRAFT_174931 [Selaginella moellendorffii]
gi|300156649|gb|EFJ23277.1| hypothetical protein SELMODRAFT_174931 [Selaginella moellendorffii]
Length = 513
Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust.
Identities = 274/476 (57%), Positives = 342/476 (71%), Gaps = 13/476 (2%)
Query: 7 KSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPG 66
K+ PVL WMR P+DV FE+ LD +P L P L +L+N+GI SLFPVQ AVW ET+GPG
Sbjct: 3 KAPPVLQWMRQPLDVKSFEEQSLDSVPFLHPGLMESLRNVGIHSLFPVQAAVWHETVGPG 62
Query: 67 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126
RDL I+SPTGSGKTL+Y+LPI Q+LS R +R LRAL+V+PTRDLA+QVK VF AIAP
Sbjct: 63 GGARDLSISSPTGSGKTLAYSLPIAQSLSQRLLRRLRALIVVPTRDLAMQVKQVFDAIAP 122
Query: 127 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD----PEDVLQELQSAVDILVATPGR 182
+VGLS+G+AVGQ+S+A E S+L+ P + C+ D L E S VDILVATPGR
Sbjct: 123 SVGLSIGIAVGQTSVAAEASQLVLFPG-KTDTCFRELHLASDNLPE--SRVDILVATPGR 179
Query: 183 LMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPS 242
LMDHI T GFTLEHL YLVVDETDRLLREAYQ WLPTVL+ N + D++
Sbjct: 180 LMDHIQNTPGFTLEHLQYLVVDETDRLLREAYQEWLPTVLEAATGKNFSPSDDSN----P 235
Query: 243 AFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL--FLTTGETR 300
GS++TIRR +ERG K PRL K+++SATLT+DP K+AQL L+HPL L+T +
Sbjct: 236 GIGSVRTIRRSCLERGIKGCVVPRLQKIIVSATLTRDPAKIAQLGLYHPLSIALSTSDNL 295
Query: 301 YKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRI 360
YKLPE+L SY +IC+++ KPL LV LL SLG+++ ++FTSSV +THRL T L F +L
Sbjct: 296 YKLPEQLRSYTIICKAQQKPLKLVTLLHSLGDQRTVIFTSSVSNTHRLSTFLACFEDLPF 355
Query: 361 KIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYI 420
+ EYS Q Q RSK L AFR G+ QVLV+SDAM RGMDVEGV +++NYD P + +TY+
Sbjct: 356 RAVEYSSFQHQLARSKALAAFRAGEAQVLVASDAMARGMDVEGVTHIINYDMPPFARTYV 415
Query: 421 HRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVY 476
HR GRTARAG+ G CFTLL K+EV+ FK +L K N SC + + S + LRP Y
Sbjct: 416 HRVGRTARAGRSGSCFTLLRKEEVRYFKSILAKVQNSSCKTYKVSSESTKELRPRY 471
>gi|356554249|ref|XP_003545461.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase
1-like [Glycine max]
Length = 492
Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust.
Identities = 265/471 (56%), Positives = 323/471 (68%), Gaps = 47/471 (9%)
Query: 11 VLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQ-NMGISSLFPVQVAVWQETIGPGLFE 69
VLPWMR PVD++ ++ P+ +P + RL++ L+ NMGIS LFPV V +WQET+GP FE
Sbjct: 41 VLPWMRHPVDITRCQELPVCSVPLMKWRLQLVLEVNMGISKLFPVXVTLWQETVGPSDFE 100
Query: 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129
RDLCINSPTG GKTL+YALP++Q L CLRALVV+PT D ALQVK VF A+A +G
Sbjct: 101 RDLCINSPTGRGKTLAYALPLIQNLFTDPGGCLRALVVVPTHDFALQVKRVFDALASLLG 160
Query: 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL--QSAVDILVATPGRLMDHI 187
L +GLA GQSS+ E S LI P+ + G L L QS V+ILVAT GRL+DH+
Sbjct: 161 LRIGLAAGQSSLRHEFSSLIFLPREDDG---PNPGFLSSLWFQSKVNILVATLGRLVDHV 217
Query: 188 NATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSL 247
N +L+HL YLVVDE DR L E YQ+WLPTV++LT+ FG
Sbjct: 218 NK---LSLKHLRYLVVDEADRFLHEDYQSWLPTVIKLTQ-----------------FG-- 255
Query: 248 KTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 307
L K+VL A LT+ P +LAQL LH+ LFL+ G+ Y+LPE L
Sbjct: 256 -------------------LAKIVLFAMLTRGPGRLAQLILHYLLFLSAGKMCYRLPEYL 296
Query: 308 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 367
E YKLICE K+KPLYLVALL+SLGEEKCIVFT VESTH LC LLN FG+L+I IKE+SG
Sbjct: 297 ECYKLICERKVKPLYLVALLKSLGEEKCIVFTRFVESTHHLCKLLNFFGDLKIGIKEFSG 356
Query: 368 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 427
L+ Q VRSKT+ F+ + QVLVSSDAMTR MDVEG+ NV+NYD P Y KTY+HR GRTA
Sbjct: 357 LKHQQVRSKTVGEFQRREFQVLVSSDAMTRVMDVEGLRNVINYDVPKYTKTYVHRPGRTA 416
Query: 428 RAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKS 478
RAGQ G CFTL+ KDEV F+KL++KA+ C H++PSSLIE+L Y S
Sbjct: 417 RAGQTGCCFTLMSKDEVGGFEKLMKKAEASDCLQHTVPSSLIEALHSTYSS 467
>gi|326532600|dbj|BAK05229.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 363
Score = 476 bits (1225), Expect = e-131, Method: Compositional matrix adjust.
Identities = 239/354 (67%), Positives = 277/354 (78%), Gaps = 1/354 (0%)
Query: 2 EEAKKKSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQE 61
+EA ++ +P LPWMR PVD+ F CP+ LP LDPRL ALQ MGI S FPVQV+ W E
Sbjct: 11 DEAPEERVPHLPWMRHPVDIDSFSACPVASLPRLDPRLAEALQRMGIESFFPVQVSAWLE 70
Query: 62 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121
TIGPG F+RD+CINSPTGSGKTL+YALPIVQ LS R VRCLRALVVLPTRDLALQVK+VF
Sbjct: 71 TIGPGAFQRDICINSPTGSGKTLAYALPIVQMLSTRKVRCLRALVVLPTRDLALQVKEVF 130
Query: 122 AAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPG 181
AIAP VGL+V AVGQSSIADEIS+LIK+ K E D E V E Q+ VDILVATPG
Sbjct: 131 DAIAPVVGLTVASAVGQSSIADEISDLIKKSKQELYPSLDDEYVEMEPQTKVDILVATPG 190
Query: 182 RLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLP 241
RLMDHIN T+GF+LEHL YLVVDETDR+LREAYQ+WLPTV+Q TR ++ F +T
Sbjct: 191 RLMDHINMTKGFSLEHLQYLVVDETDRMLREAYQSWLPTVIQFTRPTKQDLFRHDTTGR- 249
Query: 242 SAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRY 301
+ L TIRR GVERGFK K YPRL K+V SATLTQDP+KL+QL+LHHPL L +G+ RY
Sbjct: 250 TLLHPLTTIRRSGVERGFKGKCYPRLAKIVCSATLTQDPSKLSQLELHHPLLLNSGKKRY 309
Query: 302 KLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHF 355
++PE+LESYKLIC S +KPL L+ LLQ L EKC+VFT SV+ +HRL TLL F
Sbjct: 310 RIPEKLESYKLICTSNIKPLCLIVLLQELRGEKCLVFTKSVDDSHRLSTLLGFF 363
>gi|168044025|ref|XP_001774483.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674195|gb|EDQ60707.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 462
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 252/446 (56%), Positives = 317/446 (71%), Gaps = 11/446 (2%)
Query: 7 KSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPG 66
K P LPWMRSPV++++ + +D +P LD RL+ AL+ GI +LFPVQVAVW + +GPG
Sbjct: 14 KGPPALPWMRSPVEIAIHDPLSVDEVPLLDSRLQEALRKAGIEALFPVQVAVWNQVLGPG 73
Query: 67 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126
ERDLC+ SPTGSGKTLS+ALPIVQ LS R +R LRALVVLPTRDLA+QVK VF +AP
Sbjct: 74 GRERDLCVCSPTGSGKTLSFALPIVQLLSTRVLRRLRALVVLPTRDLAVQVKSVFDILAP 133
Query: 127 AVGLSVGLAVGQSSIADEISELIK-RPKLEAGI-CYDPEDVLQELQSAVDILVATPGRLM 184
AVGLSVG+ VGQS++A E+ EL+K R +L Y+ + +S +DILVATPGRLM
Sbjct: 134 AVGLSVGI-VGQSTVAAEVGELVKTRSRLVHSFETYEAVENNLVYESCIDILVATPGRLM 192
Query: 185 DHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAF 244
DH+ T GFT+EHL YLVVDETDRLLR+ YQ+WLP VL + + RF D S
Sbjct: 193 DHLKNTPGFTVEHLQYLVVDETDRLLRQDYQSWLPNVLNVIQI--PERFDDVSRRKAQCL 250
Query: 245 ---GSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL--TTGET 299
G T RR +ERG K + +PR++K +LSATLT+DP K+AQLDL+ PL+L + E+
Sbjct: 251 RGTGVAFTQRRWCLERGSKGRVHPRVMKFLLSATLTKDPAKIAQLDLYWPLYLAPSAEES 310
Query: 300 RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHF-GEL 358
RY LP++L+++KLI + KPL LVALL+ + I+F +SVE+TH+L LL HF
Sbjct: 311 RYHLPKQLKAFKLITRASKKPLVLVALLEQFKNQSTIIFNASVEATHQLFLLLRHFYAGQ 370
Query: 359 RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKT 418
+ EYS Q Q +R K L F +GK+ V+V+SDAMTRGMDVEGV NV+NYD P Y KT
Sbjct: 371 EFSVVEYSSRQPQHIRRKALADFTDGKVHVIVASDAMTRGMDVEGVANVINYDVPVYAKT 430
Query: 419 YIHRAGRTARAGQLGRCFTLLHKDEV 444
Y+HR GRTARAGQ GR FTLL K EV
Sbjct: 431 YVHRVGRTARAGQAGRAFTLLVKKEV 456
>gi|302839717|ref|XP_002951415.1| hypothetical protein VOLCADRAFT_61333 [Volvox carteri f.
nagariensis]
gi|300263390|gb|EFJ47591.1| hypothetical protein VOLCADRAFT_61333 [Volvox carteri f.
nagariensis]
Length = 654
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 218/492 (44%), Positives = 302/492 (61%), Gaps = 24/492 (4%)
Query: 3 EAKKKSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQN-MGISSLFPVQVAVWQE 61
E + PVLPWM P+ + P++ + LD RL L+N G LFPVQ AVWQ
Sbjct: 24 ETSGGAGPVLPWMCVPLTIESGSGIPVEKVLGLDARLASQLRNGFGFPELFPVQTAVWQH 83
Query: 62 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121
+ G DLC+ +PTGSGKTL+YALP+V +L++ V CLRALVVLPTRDLA+QV DVF
Sbjct: 84 SAGGTSTAHDLCVAAPTGSGKTLAYALPVVNSLAD--VGCLRALVVLPTRDLAVQVYDVF 141
Query: 122 AAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAG----ICYDPEDVLQELQSAVDILV 177
+ AV L+V LA ++S A E + ++ P + + + D+LV
Sbjct: 142 RPLCDAVQLNVALAAARTSEAAEAAAIVGLPASSSSSSPFVAGGGSAAAPGCRRGADVLV 201
Query: 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 237
ATPGRLM H++ + G +L HL +LV DETDRLLR++YQ+WLP +L + + + +
Sbjct: 202 ATPGRLMSHLSGSPGVSLRHLRFLVADETDRLLRQSYQSWLP---RLPEAVPKPKLHISP 258
Query: 238 TFLPSAFGSL-KTIRRCGVERGFKDKPYP--RLVKMVLSATLTQDPNKLAQLDLHHPLFL 294
+ P FGSL + RR + + + R+VK+V+SATLT+DP KL +L LHHP F+
Sbjct: 259 SDSPILFGSLPRHARRSASSQTYIPCTHVMCRVVKIVVSATLTRDPAKLQRLALHHPRFV 318
Query: 295 TTGET-----------RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVE 343
T RY LP L Y+L+C + KPL L+ALLQ + IVFTSS+E
Sbjct: 319 ATATAAGGGGGGAAAGRYSLPRSLSEYRLMCSAARKPLVLLALLQEWSGQSTIVFTSSLE 378
Query: 344 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG 403
TH+L +L+ +L ++ EYS L R+ L+ FR G +++LV+SDAMTRGMDV+
Sbjct: 379 MTHKLFLMLSAVQDLPDEVVEYSSLVPVRARAAALERFRTGSVELLVASDAMTRGMDVDC 438
Query: 404 VNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHS 463
V NV+NYD P Y KTY+HRAGRTARAG+ GR TLL ++++ FK ++ KADN+ +
Sbjct: 439 VQNVINYDAPVYAKTYVHRAGRTARAGKPGRVITLLRDEDMRHFKAMIHKADNNFVREYK 498
Query: 464 IPSSLIESLRPV 475
+PS +E+LRP
Sbjct: 499 LPSERVEALRPA 510
>gi|384254028|gb|EIE27502.1| P-loop containing nucleoside triphosphate hydrolase protein
[Coccomyxa subellipsoidea C-169]
Length = 562
Score = 386 bits (992), Expect = e-104, Method: Compositional matrix adjust.
Identities = 222/499 (44%), Positives = 291/499 (58%), Gaps = 61/499 (12%)
Query: 4 AKKKSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETI 63
A K+ PVLPWMR P+ + + PL+ + LD RL+ AL+ G LFPVQ A WQ T
Sbjct: 80 ADGKNQPVLPWMRLPIKIEAGQGVPLEDVRGLDSRLQDALKACGFVELFPVQAAAWQVTA 139
Query: 64 GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123
G DLCI++PTGSGKTL+YALPI+Q L R V LR LVVLPTRDLA QV VFA
Sbjct: 140 GGHSAAHDLCISAPTGSGKTLAYALPILQGLLGRCVPRLRCLVVLPTRDLAAQVFKVFAD 199
Query: 124 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-----------SA 172
+ P +GL VG+A Q+S+ E + L D +++ Q SA
Sbjct: 200 LCPPLGLRVGMAAAQTSVGTEAATLFP-------------DAIRDQQSIRGMAAVSNSSA 246
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
VDILVATPGRLM H+ T G TL L YLV+DETDRLLR+AYQ WLP V T +
Sbjct: 247 VDILVATPGRLMAHLKGTPGATLNDLRYLVIDETDRLLRQAYQDWLPFVTAATVGGPGD- 305
Query: 233 FSDASTFLPSAFGSLKTIRRCGVE--RGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 290
+R G + RG P ++K+V SATLT+DP+K+ +L L+
Sbjct: 306 ---------------PPVRGPGGQPVRG----PQRHVLKIVASATLTRDPSKIERLGLNC 346
Query: 291 PLFLTTGET---------------RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKC 335
P ++ G + Y +P+ L+ +K++C KP+ VALL+ L E
Sbjct: 347 PRYIALGASDHRHATILHLLSHAREYAMPKSLKEFKVVCAGADKPVLAVALLRQLANEPT 406
Query: 336 IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 395
++FT+SVE+T RL LL+ LR + E+S L R+ TL AFR G ++LV+SD M
Sbjct: 407 LIFTASVEATRRLFVLLHAVPSLRESVLEFSSLNSGPERAATLAAFRGGDARILVASDGM 466
Query: 396 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 455
TRGMDV V NVVNYD P Y KTY+HRAGRTAR G+ GR FTLL +EV+ FK LL+K D
Sbjct: 467 TRGMDVPSVANVVNYDAPIYAKTYVHRAGRTARGGREGRVFTLLRTEEVRHFKGLLRKVD 526
Query: 456 NDSCPIHSIPSSLIESLRP 474
N +++P + +++ RP
Sbjct: 527 NAFVKDYALPKADVDAARP 545
>gi|356554241|ref|XP_003545457.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase
1-like [Glycine max]
Length = 333
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 209/373 (56%), Positives = 255/373 (68%), Gaps = 47/373 (12%)
Query: 2 EEAKKKSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQ-NMGISSLFPVQVAVWQ 60
EE ++ S+ VLPWMR PVD++ +++ P+ +P + RL+ L+ NMGIS LFPVQV +W
Sbjct: 3 EEKQQPSVVVLPWMRHPVDITRYQELPICSVPLMKRRLQSVLEKNMGISKLFPVQVTLWX 62
Query: 61 ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV 120
ET+GPG FERDLCI P SGKTL+YA PIVQ LS LRALVV+PTRDL+LQVK V
Sbjct: 63 ETVGPGDFERDLCIKLPIESGKTLAYAFPIVQNLSTDTGGRLRALVVVPTRDLSLQVKRV 122
Query: 121 FAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL--QSAVDILVA 178
F A+A +GL + LA QSS+ ++S LI P + G DP L L QS VDILV
Sbjct: 123 FDALASLLGLRICLATDQSSLRHKLSSLIYLPGEDDG--QDP-GFLSSLWFQSKVDILVV 179
Query: 179 TPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAST 238
TPGRL+DH+N +L+HL YL+VDE DRLLRE YQ+WLPTVL+LT+S
Sbjct: 180 TPGRLVDHVNK---LSLKHLRYLMVDEADRLLREDYQSWLPTVLKLTQS----------- 225
Query: 239 FLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE 298
RL K+VLSATLT+DP +LAQL+LHHPLFL+TG+
Sbjct: 226 ---------------------------RLTKIVLSATLTRDPGRLAQLNLHHPLFLSTGK 258
Query: 299 TRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGEL 358
RY+LPE LE YKLICE K+KPLYLVALL+SLGEE CIVFT SVESTH LC LLN FG+L
Sbjct: 259 MRYRLPEYLECYKLICERKVKPLYLVALLKSLGEENCIVFTRSVESTHHLCKLLNCFGDL 318
Query: 359 RIKIKEYSGLQRQ 371
+I IKE+S L+ Q
Sbjct: 319 KIGIKEFSSLKHQ 331
>gi|2326341|emb|CAA72069.1| RH1 protein [Arabidopsis thaliana]
Length = 244
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 178/244 (72%), Positives = 211/244 (86%)
Query: 180 PGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTF 239
PGRLMDHIN T+GFTLEHL YLVVDETDRLLREAYQ+WLPTVLQLT++ +++ F + F
Sbjct: 1 PGRLMDHINNTKGFTLEHLRYLVVDETDRLLREAYQSWLPTVLQLTQTSDDSLFPSFTPF 60
Query: 240 LPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET 299
+PSAFGSL+T+RR VERGFK KPYPRLVKMVLSATLTQDP+KL QLDLHHPLF+TTG +
Sbjct: 61 VPSAFGSLQTVRRQSVERGFKGKPYPRLVKMVLSATLTQDPSKLIQLDLHHPLFMTTGGS 120
Query: 300 RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELR 359
RY+LPE+LE +LICE+ +KP+YLVALL+S EKCI+FTSSVE+T RLC LLN FG+ +
Sbjct: 121 RYRLPEKLECLRLICETGMKPVYLVALLKSWEGEKCIIFTSSVETTRRLCKLLNFFGDPK 180
Query: 360 IKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTY 419
IK KEYSG QS+RSK LKAFR+G IQVLV+SDA+TRGMDV+GV NV+NYD P + KT+
Sbjct: 181 IKAKEYSGGLNQSLRSKELKAFRKGDIQVLVASDALTRGMDVKGVTNVINYDMPPFAKTF 240
Query: 420 IHRA 423
IHRA
Sbjct: 241 IHRA 244
>gi|356528222|ref|XP_003532704.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase
1-like [Glycine max]
Length = 341
Score = 367 bits (941), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 207/373 (55%), Positives = 254/373 (68%), Gaps = 47/373 (12%)
Query: 5 KKKSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQ-NMGISSLFPVQVAVWQETI 63
++ S+ +LPWM PVD++ ++ P+ +P ++ RL+ L+ NMGIS LF VQVA+WQET+
Sbjct: 2 EQPSVAILPWMHHPVDITRCQELPVCSVPLMERRLQSVLEENMGISKLFSVQVALWQETV 61
Query: 64 GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123
G FERDLCINSPT SGKTL+YALPIVQ LS L ALVV+PTRDLALQVK VF A
Sbjct: 62 GSDDFERDLCINSPTESGKTLAYALPIVQNLSTNTSDRLFALVVVPTRDLALQVKRVFDA 121
Query: 124 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL--QSAVDILVATPG 181
+A ++GL +GLA GQSS+ E+S LI P + G DP L L QS V+ILVATPG
Sbjct: 122 LASSLGLHIGLAAGQSSLRHELSSLIYLPGEDDG--PDP-GFLSPLWFQSKVNILVATPG 178
Query: 182 RLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLP 241
RLMDH+N +L+HL YLVVDE DRLLRE YQ+WLPTVL+LT+
Sbjct: 179 RLMDHVNK---LSLKHLRYLVVDEADRLLREDYQSWLPTVLKLTQF-------------- 221
Query: 242 SAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRY 301
RL K+VLS LT DP +LA L+LHHPLFL+ G+ RY
Sbjct: 222 ------------------------RLAKIVLSVILTLDPGRLAXLNLHHPLFLSAGKMRY 257
Query: 302 KLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIK 361
+L E LE +KLICE K+KPLYLV LL+SLG+EKCIVFT SVESTH LC LLN FG+L+I
Sbjct: 258 RLLEYLECFKLICERKVKPLYLVTLLKSLGKEKCIVFTRSVESTHHLCKLLNCFGDLKIG 317
Query: 362 IKEYSGLQRQSVR 374
IKE+SGL+ Q V+
Sbjct: 318 IKEFSGLKHQLVQ 330
>gi|194214438|ref|XP_001915702.1| PREDICTED: ATP-dependent RNA helicase DDX51 [Equus caballus]
Length = 550
Score = 317 bits (813), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 194/506 (38%), Positives = 279/506 (55%), Gaps = 59/506 (11%)
Query: 7 KSMPVLP-WMRSP--VDVSLFED-CPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQ-- 60
K P LP W+ P V+ ++ +D P++ +P + P L+ L+ GISS FPVQ AV
Sbjct: 54 KVQPFLPAWLAEPSCVEKNVTKDLVPIEDVPEVHPDLQKKLRAHGISSYFPVQAAVIPAL 113
Query: 61 -ETIGPGLF-------ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
E++ G DLC+++PTGSGKTL++ +P+VQ L +RAV +RALVVLPT++
Sbjct: 114 LESMANGFLVGRGGYQPSDLCVSAPTGSGKTLAFVIPLVQALLHRAVCQVRALVVLPTKE 173
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA QV VF A L V L GQ ++A E L++R + +
Sbjct: 174 LAQQVSKVFNVYTDATPLRVALVTGQKTLAKEQETLVQR-------------TVDGFRCL 220
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ--LTRSDNE 230
DI+VATPGRL+DHI+ T GF+L+ L +LV+DE DR++ +Q+WLP V+ R +
Sbjct: 221 ADIVVATPGRLVDHIDQTPGFSLQQLRFLVIDEADRMIDSMHQSWLPRVMAAAFPREGTK 280
Query: 231 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 290
+ FS P A + T C P L K++ SATLTQ+P KL QL LH
Sbjct: 281 SLFSLLQRRQPQAITAASTC--C---------PQMPLQKLLFSATLTQNPEKLQQLGLHQ 329
Query: 291 PLFLTTG-----------------ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEE 333
P +TG +Y P L + + C + KPL ++ L+ +
Sbjct: 330 PRLFSTGLAQRGSRDADAEADGESAGKYTFPAGLTHHYVPCSLRSKPLVVLHLVLEMNFS 389
Query: 334 KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 393
+ + FT+S E++HRL L FG + + E+S R LK F +GKIQ+L+S+D
Sbjct: 390 RVLCFTNSRENSHRLFLLAQAFGG--VSVAEFSSRYGPGQRKMILKQFEQGKIQLLISTD 447
Query: 394 AMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQK 453
AM RG+DV+GV VVNYD P Y++TY+HR GRTARAG+ G+ FTLL K + +RF ++L +
Sbjct: 448 AMARGIDVQGVQLVVNYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLKVQERRFLRMLAE 507
Query: 454 ADNDSCPIHSIPSSLIESLRPVYKSV 479
H PS L++ L P Y++
Sbjct: 508 GGVPELERHDTPSKLLQPLVPRYEAA 533
>gi|301775625|ref|XP_002923233.1| PREDICTED: ATP-dependent RNA helicase DDX51-like [Ailuropoda
melanoleuca]
Length = 517
Score = 314 bits (805), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 193/500 (38%), Positives = 277/500 (55%), Gaps = 52/500 (10%)
Query: 7 KSMPVLP-WMRSP--VDVSLFED-CPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQ-- 60
K P LP W+ P V S+ ED P++ +P + P ++ L+ GISS FPVQ AV
Sbjct: 22 KVQPFLPSWLAEPSCVGKSVTEDLVPIEDIPEVHPDMQKKLRAHGISSYFPVQAAVIPAL 81
Query: 61 -ETIGPGLF-------ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
E+ G RDLC+++PTGSGKTL++ +P+VQ L RAV +RALVVLPT++
Sbjct: 82 LESTANGFLVARGGYRPRDLCVSAPTGSGKTLAFVIPVVQALLRRAVCQVRALVVLPTKE 141
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA QV VF + A L V L GQ S+ E L+++ +
Sbjct: 142 LAQQVSKVFNSYTDATPLRVALITGQKSLVKEQESLVQK-------------TADGFRCL 188
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
D++VATPGRL+DHI+ T GF+L+HL +LV+DE DR++ +Q+WLP V++
Sbjct: 189 ADVVVATPGRLVDHIDQTPGFSLQHLRFLVIDEADRMIDSMHQSWLPRVVEAVFR----- 243
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
SD + P A L+ + P L K++ SATLTQ+P KL QL L+ P
Sbjct: 244 -SDGAKDRPLAL--LQRRQPQATTAASISCPQMPLQKLLFSATLTQNPEKLQQLGLYQPR 300
Query: 293 FLTTGETR---------------YKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIV 337
+TG R Y P L + + C + KPL ++ L+ + +
Sbjct: 301 LFSTGLARRGPRDADEDRDSGGKYTFPTGLSHHYVPCSLRTKPLAVLHLILEKNFSRVLC 360
Query: 338 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTR 397
FT+S E++HRL L+ FG + E+S S R LK F +GKIQ+L+S+DAM R
Sbjct: 361 FTNSRENSHRLFLLVQAFGG--VTAAEFSSRCGPSQRKVVLKQFEQGKIQLLISTDAMAR 418
Query: 398 GMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADND 457
G+DV+GV V+NYD P Y++TY+HR GRTARAG+ G+ FTLL K + ++F ++L +A
Sbjct: 419 GIDVQGVQRVINYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLKVQERKFLRMLAEAGVP 478
Query: 458 SCPIHSIPSSLIESLRPVYK 477
H IP+ L++ L P Y+
Sbjct: 479 EMARHDIPNELLQPLLPRYE 498
>gi|73994975|ref|XP_543351.2| PREDICTED: ATP-dependent RNA helicase DDX51 [Canis lupus
familiaris]
Length = 631
Score = 314 bits (804), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 193/501 (38%), Positives = 276/501 (55%), Gaps = 55/501 (10%)
Query: 7 KSMPVLP-WMRSPVDV--SLFED-CPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQ-- 60
K+ P LP W+ P V S+ ED P++ +P + P ++ LQ GISS FPVQ AV
Sbjct: 137 KAQPFLPLWLAEPSSVGKSVTEDLVPIEDIPEVHPDMQKKLQAHGISSYFPVQAAVIPTL 196
Query: 61 -ETIGPGLF-------ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
E+I G DLC+++PTGSGKTL++ +P+VQ L RAV +RALVVLPT++
Sbjct: 197 LESIANGFLVARGGYRPSDLCVSAPTGSGKTLAFVIPVVQALLCRAVCQVRALVVLPTKE 256
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA QV VF A L V L GQ S+ E L+++ + +
Sbjct: 257 LAQQVSKVFNIYTDATPLRVALITGQKSLVKEQESLVQK-------------TVDGFRCL 303
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT-RSDNEN 231
D++VATPGRL+DHI+ T GF+L+HL +L++DE DR++ +Q+WLP V++ SD N
Sbjct: 304 ADVVVATPGRLVDHIDQTPGFSLQHLRFLIIDEADRMIDSMHQSWLPRVVEAAFPSDVAN 363
Query: 232 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 291
F L+ + P L K++ SATLTQ+P KL QL L+ P
Sbjct: 364 ----------DPFALLQRRQLQATTAASISCPQMPLQKLLFSATLTQNPEKLQQLGLYQP 413
Query: 292 LFLTTGET---------------RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCI 336
+TG +Y P L + + C + KPL ++ L+ + +
Sbjct: 414 RLFSTGLAGRGPRDIDRDGESGGKYTFPTGLSHHYVPCSLRTKPLAILHLILERNFSRVL 473
Query: 337 VFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT 396
FT+S E++HRL L+ FG + E+S R R LK F +GKIQ+L+S+DAM
Sbjct: 474 CFTNSRENSHRLFLLVQAFGG--VAAAEFSSRCRPGQRKVVLKQFEQGKIQLLISTDAMA 531
Query: 397 RGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 456
RG+DV+GV V+NYD P Y++TY+HR GRTARAG+ G+ FTLL K + +RF ++L +A
Sbjct: 532 RGIDVQGVQLVINYDAPQYLRTYVHRVGRTARAGRTGQAFTLLLKVQERRFLQMLAEAGV 591
Query: 457 DSCPIHSIPSSLIESLRPVYK 477
H I S L++ L P Y+
Sbjct: 592 PKMARHDIHSELLQPLVPRYE 612
>gi|297484677|ref|XP_002694482.1| PREDICTED: ATP-dependent RNA helicase DDX51, partial [Bos taurus]
gi|296478689|tpg|DAA20804.1| TPA: DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 [Bos taurus]
Length = 555
Score = 314 bits (804), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 191/502 (38%), Positives = 275/502 (54%), Gaps = 55/502 (10%)
Query: 7 KSMPVLP-WMRSP--VDVSLFED-CPLDHLPCLDPRLKVALQNMGISSLFPVQVAV---- 58
K P LP W+ P V ++ E P++ +P + P L+ L+ GISS FPVQ AV
Sbjct: 59 KVQPFLPVWLAQPSCVGKNVTEGLVPIEDIPEVHPDLQKKLRAQGISSYFPVQAAVIPAV 118
Query: 59 WQETIGPGLFER------DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
+ T L R DLC+++PTGSGKTL++ +P+VQ L +RAV +RALVVLPT++
Sbjct: 119 LESTANGFLVSRGGYRPSDLCVSAPTGSGKTLAFVIPVVQALLHRAVCQVRALVVLPTKE 178
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA QV VF A L V L GQ S+A E L+++ +
Sbjct: 179 LAQQVSKVFNVYTDATPLRVALITGQKSLAKEQESLVQK-------------TADGFRCL 225
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
DI+VATPGRL+DHI+ T GF+L+HL +L++DE DR++ +Q+WLP V+ R
Sbjct: 226 ADIMVATPGRLVDHIDQTPGFSLQHLRFLIIDEADRMIDSMHQSWLPRVVAAAFPSEGPR 285
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
+ F + L C P L K++ SATLTQ+P KL QL L+ P
Sbjct: 286 -DPCAVFQRTQPRVLTAASMCC--------PQMPLQKLLFSATLTQNPEKLQQLGLYQPR 336
Query: 293 FLTTGET-----------------RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKC 335
+TG +Y P L+ + + C + KPL ++ L+ + +
Sbjct: 337 LFSTGSAHRGPSDPDIDVDEDSGGKYTFPTGLKHHYVPCSLRFKPLVILHLILEMNFSRV 396
Query: 336 IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 395
+ FT+S E++HRL L+ FG + + E+S R LK F +GKIQ+L+S+DAM
Sbjct: 397 LCFTNSRENSHRLFLLVQAFGG--VTVAEFSSRYGPGQRKSILKQFEQGKIQLLISTDAM 454
Query: 396 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 455
RG+DV+GV VVNYD P Y++TY+HR GRTARAG+ G+ FTLL K + +RF ++L++
Sbjct: 455 ARGIDVQGVQLVVNYDAPQYLRTYVHRVGRTARAGKSGQAFTLLLKVQERRFLRMLEEGG 514
Query: 456 NDSCPIHSIPSSLIESLRPVYK 477
H PS L++ L P Y+
Sbjct: 515 VPGLERHDTPSELLQPLVPQYE 536
>gi|194674602|ref|XP_001787674.1| PREDICTED: ATP-dependent RNA helicase DDX51, partial [Bos taurus]
Length = 565
Score = 314 bits (804), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 191/502 (38%), Positives = 275/502 (54%), Gaps = 55/502 (10%)
Query: 7 KSMPVLP-WMRSP--VDVSLFED-CPLDHLPCLDPRLKVALQNMGISSLFPVQVAV---- 58
K P LP W+ P V ++ E P++ +P + P L+ L+ GISS FPVQ AV
Sbjct: 69 KVQPFLPVWLAQPSCVGKNVTEGLVPIEDIPEVHPDLQKKLRAQGISSYFPVQAAVIPAV 128
Query: 59 WQETIGPGLFER------DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
+ T L R DLC+++PTGSGKTL++ +P+VQ L +RAV +RALVVLPT++
Sbjct: 129 LESTANGFLVSRGGYRPSDLCVSAPTGSGKTLAFVIPVVQALLHRAVCQVRALVVLPTKE 188
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA QV VF A L V L GQ S+A E L+++ +
Sbjct: 189 LAQQVSKVFNVYTDATPLRVALITGQKSLAKEQESLVQK-------------TADGFRCL 235
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
DI+VATPGRL+DHI+ T GF+L+HL +L++DE DR++ +Q+WLP V+ R
Sbjct: 236 ADIMVATPGRLVDHIDQTPGFSLQHLRFLIIDEADRMIDSMHQSWLPRVVAAAFPSEGPR 295
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
+ F + L C P L K++ SATLTQ+P KL QL L+ P
Sbjct: 296 -DPCAVFQRTQPRVLTAASMCC--------PQMPLQKLLFSATLTQNPEKLQQLGLYQPR 346
Query: 293 FLTTGET-----------------RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKC 335
+TG +Y P L+ + + C + KPL ++ L+ + +
Sbjct: 347 LFSTGSAHRGPSDPDIDVDEDSGGKYTFPTGLKHHYVPCSLRFKPLVILHLILEMNFSRV 406
Query: 336 IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 395
+ FT+S E++HRL L+ FG + + E+S R LK F +GKIQ+L+S+DAM
Sbjct: 407 LCFTNSRENSHRLFLLVQAFGG--VTVAEFSSRYGPGQRKSILKQFEQGKIQLLISTDAM 464
Query: 396 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 455
RG+DV+GV VVNYD P Y++TY+HR GRTARAG+ G+ FTLL K + +RF ++L++
Sbjct: 465 ARGIDVQGVQLVVNYDAPQYLRTYVHRVGRTARAGKSGQAFTLLLKVQERRFLRMLEEGG 524
Query: 456 NDSCPIHSIPSSLIESLRPVYK 477
H PS L++ L P Y+
Sbjct: 525 VPGLERHDTPSELLQPLVPQYE 546
>gi|281340804|gb|EFB16388.1| hypothetical protein PANDA_012336 [Ailuropoda melanoleuca]
Length = 490
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 192/497 (38%), Positives = 276/497 (55%), Gaps = 52/497 (10%)
Query: 10 PVLP-WMRSP--VDVSLFED-CPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQ---ET 62
P LP W+ P V S+ ED P++ +P + P ++ L+ GISS FPVQ AV E+
Sbjct: 3 PFLPSWLAEPSCVGKSVTEDLVPIEDIPEVHPDMQKKLRAHGISSYFPVQAAVIPALLES 62
Query: 63 IGPGLF-------ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115
G RDLC+++PTGSGKTL++ +P+VQ L RAV +RALVVLPT++LA
Sbjct: 63 TANGFLVARGGYRPRDLCVSAPTGSGKTLAFVIPVVQALLRRAVCQVRALVVLPTKELAQ 122
Query: 116 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDI 175
QV VF + A L V L GQ S+ E L+++ + D+
Sbjct: 123 QVSKVFNSYTDATPLRVALITGQKSLVKEQESLVQK-------------TADGFRCLADV 169
Query: 176 LVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSD 235
+VATPGRL+DHI+ T GF+L+HL +LV+DE DR++ +Q+WLP V++ SD
Sbjct: 170 VVATPGRLVDHIDQTPGFSLQHLRFLVIDEADRMIDSMHQSWLPRVVEAVFR------SD 223
Query: 236 ASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLT 295
+ P A L+ + P L K++ SATLTQ+P KL QL L+ P +
Sbjct: 224 GAKDRPLAL--LQRRQPQATTAASISCPQMPLQKLLFSATLTQNPEKLQQLGLYQPRLFS 281
Query: 296 TGETR---------------YKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTS 340
TG R Y P L + + C + KPL ++ L+ + + FT+
Sbjct: 282 TGLARRGPRDADEDRDSGGKYTFPTGLSHHYVPCSLRTKPLAVLHLILEKNFSRVLCFTN 341
Query: 341 SVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMD 400
S E++HRL L+ FG + E+S S R LK F +GKIQ+L+S+DAM RG+D
Sbjct: 342 SRENSHRLFLLVQAFGG--VTAAEFSSRCGPSQRKVVLKQFEQGKIQLLISTDAMARGID 399
Query: 401 VEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCP 460
V+GV V+NYD P Y++TY+HR GRTARAG+ G+ FTLL K + ++F ++L +A
Sbjct: 400 VQGVQRVINYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLKVQERKFLRMLAEAGVPEMA 459
Query: 461 IHSIPSSLIESLRPVYK 477
H IP+ L++ L P Y+
Sbjct: 460 RHDIPNELLQPLLPRYE 476
>gi|109099284|ref|XP_001105887.1| PREDICTED: ATP-dependent RNA helicase DDX51-like [Macaca mulatta]
Length = 664
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 194/499 (38%), Positives = 275/499 (55%), Gaps = 52/499 (10%)
Query: 7 KSMPVLP-WMRSP--VDVSLFED-CPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQET 62
K P LP W+ P V ++ ED P++ +P + P L+ L+ GISS FPVQ AV
Sbjct: 171 KVQPFLPRWLAEPSCVRKNVNEDLVPIEDIPEVHPDLQKQLRAHGISSYFPVQAAVIPAL 230
Query: 63 ---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
+G G + DLC+++PTGSGKTL++ +P+VQ L +R V +RALVVLPT++
Sbjct: 231 LESAACGFLVGRGGYRPSDLCVSAPTGSGKTLAFVIPVVQALLSRVVCHIRALVVLPTKE 290
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA QV VF A L V L GQ S+A E L+++ +
Sbjct: 291 LAQQVNKVFNIYTDATPLRVSLITGQKSLAKEQESLVQK-------------TADGFRCL 337
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
DI+VATPGRL+DHI+ T GF L+ L +LV+DE DR++ +Q+WLP V+
Sbjct: 338 ADIVVATPGRLVDHIDQTPGFNLQQLRFLVIDEADRMIDSMHQSWLPRVVAAA------- 390
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
F P A + ++ V P L K++ SATLTQ+P KL QL LH P
Sbjct: 391 FQSEDPTDPCALLQRRQVQ--AVTAASTCCPQMPLQKLLFSATLTQNPEKLQQLGLHQPR 448
Query: 293 FLTTGETR--------------YKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVF 338
+TG R Y P L + + C KPL ++ L+ +G K + F
Sbjct: 449 LFSTGLARRGLEDTDGDGDLGKYAFPVGLTHHYVPCSLSSKPLVVLHLVLEMGFSKVLCF 508
Query: 339 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRG 398
T+S E++HRL L+ FG + + E+S R + LK F +GKIQ+L+S+DA RG
Sbjct: 509 TNSRENSHRLFLLVQAFGG--VDVAEFSSRYGPGQRRRILKQFEQGKIQLLISTDATARG 566
Query: 399 MDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDS 458
+DV+GV VVNYD P Y++TY+HRAGRTARAG++G+ FTLL K + +RF ++L +A
Sbjct: 567 IDVQGVELVVNYDAPQYLRTYVHRAGRTARAGKMGQAFTLLLKVQERRFLQMLTEAGAPE 626
Query: 459 CPIHSIPSSLIESLRPVYK 477
H + S L++ L P Y+
Sbjct: 627 LRRHELSSKLLQPLVPRYE 645
>gi|344299254|ref|XP_003421302.1| PREDICTED: ATP-dependent RNA helicase DDX51 [Loxodonta africana]
Length = 690
Score = 311 bits (797), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 197/502 (39%), Positives = 275/502 (54%), Gaps = 55/502 (10%)
Query: 7 KSMPVLP-WMRSP--VDVSLFED-CPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQET 62
K P+LP W+ P V + E P+ +P + P L+ L+ GISS FPVQ AV
Sbjct: 194 KVQPLLPTWLAEPSWVGKKVTEHLVPIQDIPEVHPDLQRKLRAQGISSYFPVQAAVIPAL 253
Query: 63 ---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
+G G F RDLC+++PTGSGKTL++ +P+VQTL +R V +RALVVLPT++
Sbjct: 254 LESAAGGFLVGRGGFRPRDLCVSAPTGSGKTLAFVIPVVQTLLHRVVCRIRALVVLPTKE 313
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA QV VF A L V L GQ S+A E L+++ + C
Sbjct: 314 LAQQVNRVFNIYTDATPLRVALVTGQKSLAKEQESLVQK-SADGYRCL------------ 360
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
DI+VATPGRL+DHI+ T GF+L+ L +LV+DE DR++ +Q+WLP V+
Sbjct: 361 ADIVVATPGRLVDHIDQTAGFSLQQLRFLVIDEADRMVDSMHQSWLPRVVAAA------- 413
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
F P A +R V P L K++ SATLTQ+P KL QL LH P
Sbjct: 414 FQSQGPADPCALLQRGPLR--AVTAASTWAPQMPLQKLLFSATLTQNPEKLQQLALHQPR 471
Query: 293 FLTTG-ETR----------------YKLPERLESYKLICESKLKPLYLVALLQSLGEEKC 335
+ G E+R Y PE L + + C KPL ++ L+ ++ +
Sbjct: 472 LFSAGLESRGLEGTGDDVAGDMGGKYAFPEGLAHHYVPCSLSTKPLAVLHLVLTMRFSRV 531
Query: 336 IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 395
+ FT+S E++HRL L+ FG + + E+S R +TLK F +GKIQ+LVS+DA
Sbjct: 532 LCFTNSRENSHRLFLLVQAFGG--VSVAEFSSRHGPGQRKRTLKKFEQGKIQLLVSTDAT 589
Query: 396 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 455
RG+DV+GV V+NYD P Y +TY+HR GRTARAG+ G+ FTLL + + +RF ++L A
Sbjct: 590 ARGIDVQGVELVLNYDAPQYARTYVHRVGRTARAGRAGQAFTLLLRVQERRFLRMLAGAG 649
Query: 456 NDSCPIHSIPSSLIESLRPVYK 477
H IP L++ L P Y+
Sbjct: 650 VLELRRHEIPGELLQPLVPCYE 671
>gi|355786666|gb|EHH66849.1| hypothetical protein EGM_03914, partial [Macaca fascicularis]
Length = 494
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 192/496 (38%), Positives = 274/496 (55%), Gaps = 52/496 (10%)
Query: 10 PVLP-WMRSP--VDVSLFED-CPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQET--- 62
P LP W+ P V ++ +D P++ +P + P L+ L+ GISS FPVQ AV
Sbjct: 4 PFLPRWLAEPSCVRKNVNKDLVPIEDIPEVHPDLQKQLRAHGISSYFPVQAAVIPALLES 63
Query: 63 ------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115
+G G + DLC+++PTGSGKTL++ +P+VQ L +R V +RALVVLPT++LA
Sbjct: 64 AACGFLVGRGGYRPSDLCVSAPTGSGKTLAFVIPVVQALLSRVVCHIRALVVLPTKELAQ 123
Query: 116 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDI 175
QV VF A L V L GQ S+A E L+++ + DI
Sbjct: 124 QVNKVFNIYTDATPLRVSLITGQKSLAKEQESLVQK-------------TADGFRCLADI 170
Query: 176 LVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSD 235
+VATPGRL+DHI+ T GF L+ L +LV+DE DR++ +Q+WLP V+ F
Sbjct: 171 VVATPGRLVDHIDQTPGFNLQQLRFLVIDEADRMIDSMHQSWLPRVVAAA-------FQS 223
Query: 236 ASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLT 295
P A + ++ V P L K++ SATLTQ+P KL QL LH P +
Sbjct: 224 EDPTDPCALLQRRQVQ--AVTAASTCCPQMPLQKLLFSATLTQNPEKLQQLGLHQPRLFS 281
Query: 296 TGETR--------------YKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 341
TG R Y P L + + C KPL ++ L+ +G K + FT+S
Sbjct: 282 TGLARRGLEDTDGDGDLGKYAFPVGLTHHYVPCSLSSKPLVVLHLVLEMGFSKVLCFTNS 341
Query: 342 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 401
E++HRL L+ FG + + E+S R + LK F +GKIQ+L+S+DA RG+DV
Sbjct: 342 RENSHRLFLLVQAFGG--VDVAEFSSRYGPGQRRRILKQFEQGKIQLLISTDATARGIDV 399
Query: 402 EGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPI 461
+GV VVNYD P Y++TY+HRAGRTARAG++G+ FTLL K + +RF ++L +A
Sbjct: 400 QGVELVVNYDAPQYLRTYVHRAGRTARAGKMGQAFTLLLKVQERRFLQMLTEAGAPELRR 459
Query: 462 HSIPSSLIESLRPVYK 477
H + S L++ L P Y+
Sbjct: 460 HELSSKLLQPLVPQYE 475
>gi|291412934|ref|XP_002722733.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 [Oryctolagus
cuniculus]
Length = 507
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 194/501 (38%), Positives = 276/501 (55%), Gaps = 59/501 (11%)
Query: 10 PVLP-WMRSPV----DVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQET-- 62
P LP W+ P DVS PL+ +P + P L+ L+ GIS+ FPVQ AV
Sbjct: 16 PFLPGWLAEPSCVRKDVS-GNLTPLEDVPEVHPDLQRQLRAQGISAYFPVQAAVIPVVLE 74
Query: 63 -------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114
+G G ++ RDLC+++PTGSGKTL++ +P+VQ L +R V +RALVVLPT++LA
Sbjct: 75 SAASGFLVGRGGYQPRDLCVSAPTGSGKTLAFVIPVVQALLHRVVCQIRALVVLPTKELA 134
Query: 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVD 174
QV VF A L V L GQ S+A E L++R + D
Sbjct: 135 QQVSKVFNIYTDATPLRVALVTGQRSLAKEQEGLVQR-------------TADGYRCLAD 181
Query: 175 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ--LTRSDNENR 232
I+VATPGRL+DHI+ T GF L+ L +LV+DE DR++ +Q+WLP V+ R +
Sbjct: 182 IVVATPGRLVDHIDQTPGFHLQQLRFLVIDEADRMVDSMHQSWLPRVVAAAFQREGPGDL 241
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
S P A + T R P L K++ SATLTQDP +L +L LH P
Sbjct: 242 CSVLQRSQPPAVTAASTCR-----------PQVPLQKLLFSATLTQDPERLQRLGLHQPR 290
Query: 293 FLTTGET---------------RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIV 337
++G+ +Y P L + + C + KPL ++ L+ L + +
Sbjct: 291 LFSSGQAHGGSRDGEERGGLAGKYDFPAGLTHHYVPCRLRSKPLVVLHLILELKFSRVLC 350
Query: 338 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTR 397
FT+S E++HRL L+ FG + + E+S R LK F++GKIQ+LVS+DA R
Sbjct: 351 FTNSRENSHRLFLLVQAFGG--VSVAEFSSRCGPGQRRGILKRFQQGKIQLLVSTDAAAR 408
Query: 398 GMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADND 457
G+DV+GV VVNYD P Y++TY+HR GRTARAG+ G+ FTLL K + +RF ++L++A
Sbjct: 409 GIDVQGVELVVNYDAPQYLRTYVHRVGRTARAGRTGQAFTLLLKVQERRFLQMLEEAGAP 468
Query: 458 SCPIHSIPSSLIESLRPVYKS 478
H PS L++ L P Y++
Sbjct: 469 RLQRHETPSELLQPLVPRYEA 489
>gi|426247154|ref|XP_004017351.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX51
[Ovis aries]
Length = 676
Score = 308 bits (790), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 190/502 (37%), Positives = 273/502 (54%), Gaps = 55/502 (10%)
Query: 7 KSMPVLP-WMRSP--VDVSLFED-CPLDHLPCLDPRLKVALQNMGISSLFPVQVAV---- 58
K P LP W+ P V ++ E P++ +P + P L+ L+ GISS FPVQ AV
Sbjct: 180 KVQPFLPVWLAQPSCVGKNVTEGLVPIEDIPAVHPDLQKKLRAQGISSYFPVQAAVIPAL 239
Query: 59 WQETIGPGLFER------DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
+ T L R DLC+++PTGSGKTL++ +P+VQ L +RAV +RALVVLPT++
Sbjct: 240 LESTANGFLVSRGGYRPSDLCVSAPTGSGKTLAFVIPVVQALLHRAVCQVRALVVLPTKE 299
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA QV VF A L V L GQ S+A E L+++ +
Sbjct: 300 LAQQVSKVFNVYTDATPLRVALITGQKSLAKEQESLVQK-------------TADGFRCL 346
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
DI+VATPGRL+DH++ T GF+L+HL +L++DE DR++ +Q+WLP V+
Sbjct: 347 ADIMVATPGRLVDHVDQTPGFSLQHLRFLIIDEADRMIDSMHQSWLPRVVAAA------- 399
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
F P A L+ + V P L K++ SATLTQ+P KL QL L+ P
Sbjct: 400 FPSEGPKDPCAL--LQRTQPRVVTAASMCCPQMPLQKLLFSATLTQNPEKLQQLGLYQPR 457
Query: 293 FLTTGET-----------------RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKC 335
+TG +Y P L + + C + KPL ++ L+ + +
Sbjct: 458 LFSTGSAYRAPSNPGIDVDGDSGGKYTFPVGLTHHYVPCSLRFKPLVILHLILEMNFSRV 517
Query: 336 IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 395
+ FT+S E++HRL L+ FG + + E+S R LK F +GKIQ+L+S+DA
Sbjct: 518 LCFTNSRENSHRLFLLVQAFGG--VTVAEFSSRYGPGQRKSILKQFEQGKIQLLISTDAT 575
Query: 396 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 455
RG+DV+GV VVNYD P Y++TY+HR GRTARAG+ G+ FTLL K + +RF +L++
Sbjct: 576 ARGIDVQGVQLVVNYDAPQYLRTYVHRVGRTARAGKSGQAFTLLLKVQERRFLHMLEEGG 635
Query: 456 NDSCPIHSIPSSLIESLRPVYK 477
H PS L++ L P Y+
Sbjct: 636 VPGMERHDTPSELLQPLVPRYE 657
>gi|297693495|ref|XP_002824053.1| PREDICTED: ATP-dependent RNA helicase DDX51 isoform 1 [Pongo
abelii]
Length = 672
Score = 308 bits (790), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 190/502 (37%), Positives = 276/502 (54%), Gaps = 52/502 (10%)
Query: 4 AKKKSMPVLP-WMRSP--VDVSLFED-CPLDHLPCLDPRLKVALQNMGISSLFPVQVAVW 59
++ P LP W+ P V ++ ED P++ +P + P L+ L+ GISS FPVQ AV
Sbjct: 176 GREGGRPFLPRWLTEPSCVRKNVTEDLVPIEDIPEVHPDLQKQLRAHGISSYFPVQAAVI 235
Query: 60 QET---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109
+G G + DLC+++PTGSGKTL++ +P+VQ L +R V +RALVVLP
Sbjct: 236 PALLESAACGFLVGRGGYRPSDLCVSAPTGSGKTLAFVIPVVQALLSRVVCHIRALVVLP 295
Query: 110 TRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL 169
T++LA QV VF A L V L GQ S+A E L+++
Sbjct: 296 TKELAQQVSKVFNIYTDATPLRVSLVTGQKSLAKEQESLVQK-------------TADGY 342
Query: 170 QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDN 229
+ DI+VATPGRL+DHI+ T GF+L+ L +LV+DE DR++ +Q+WLP V+ +
Sbjct: 343 RCLADIVVATPGRLVDHIDQTPGFSLQQLRFLVIDEADRMIDSMHQSWLPRVVAAA-FQS 401
Query: 230 ENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH 289
E+ + F ++ C P L K++ SATLTQ+P KL QL LH
Sbjct: 402 EDPADPCALFQRRQAQAVTAASTCC--------PQMPLQKLLFSATLTQNPEKLQQLGLH 453
Query: 290 HPLFLTTGET--------------RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKC 335
P +TG T +Y P L + + C KPL ++ L+ +G +
Sbjct: 454 QPRLFSTGLTHRGLEDTDGDGDSEKYAFPVGLTHHYVPCSLNSKPLVVLHLVLEMGFSRV 513
Query: 336 IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 395
+ FT+S E++HRL L+ FG + + E+S R LK F +GKIQ+L+S+DA
Sbjct: 514 LCFTNSRENSHRLFLLVQAFGG--VDVAEFSSRYGPGQRRMILKQFEQGKIQLLISTDAT 571
Query: 396 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 455
RG+DV+GV VVNYD P Y++TY+HR GRTARAG+ G+ FTLL K + +RF ++L +A
Sbjct: 572 ARGIDVQGVELVVNYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLKVQERRFLRMLTEAG 631
Query: 456 NDSCPIHSIPSSLIESLRPVYK 477
H + S L++ L P Y+
Sbjct: 632 APELQRHELSSKLLQPLVPRYE 653
>gi|402888183|ref|XP_003907453.1| PREDICTED: ATP-dependent RNA helicase DDX51 [Papio anubis]
Length = 656
Score = 308 bits (788), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 192/499 (38%), Positives = 275/499 (55%), Gaps = 52/499 (10%)
Query: 7 KSMPVLP-WMRSP--VDVSLFED-CPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQET 62
K P LP W+ P V ++ ED P++ +P + P L+ L+ GISS FPVQ AV
Sbjct: 163 KVQPFLPRWLAEPSCVRKNVNEDLVPIEDIPEVHPDLQKQLRAHGISSYFPVQAAVIPAL 222
Query: 63 ---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
+G G + DLC+++PTGSGKTL++ +P+VQ L +R V +RALVVLPT++
Sbjct: 223 LESAACGFLVGRGGYRPSDLCVSAPTGSGKTLAFVIPVVQALLSRVVCHIRALVVLPTKE 282
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA QV VF A L V L GQ S+A E L+++ +
Sbjct: 283 LAQQVSKVFNIYTDATPLRVSLITGQKSLAKEQESLVQK-------------TADGYRCL 329
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
DI+VATPGRL+DHI+ T GF L+ L +LV+DE DR++ +Q+WLP V+
Sbjct: 330 ADIVVATPGRLVDHIDQTPGFNLQQLRFLVIDEADRMIDSMHQSWLPRVVAAA------- 382
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
F P A L+ + V P L K++ SATLTQ+P KL QL LH P
Sbjct: 383 FQSEDPADPCAL--LQRRQAQAVTAASTCCPQMPLQKLLFSATLTQNPEKLQQLGLHQPR 440
Query: 293 FLTTG--------------ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVF 338
+TG +Y P L + + C KPL ++ L+ +G + + F
Sbjct: 441 LFSTGLAHRGLENTDGDGDSGKYAFPVGLTHHYVPCSLSSKPLVVLHLVLEMGFSRVLCF 500
Query: 339 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRG 398
T+S E++HRL L+ FG + + E+S R + LK F +GKIQ+L+S+DA RG
Sbjct: 501 TNSRENSHRLFLLVQAFGG--VDVAEFSSRYGPGQRRRILKQFEQGKIQLLISTDATARG 558
Query: 399 MDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDS 458
+DV+GV VVNYD P Y++TY+HRAGRTARAG+ G+ FTLL + + +RF ++L +A
Sbjct: 559 IDVQGVELVVNYDAPQYLRTYVHRAGRTARAGKTGQAFTLLLRVQERRFLQMLTEAGVPE 618
Query: 459 CPIHSIPSSLIESLRPVYK 477
H + S L+++L P Y+
Sbjct: 619 LRRHELSSKLLQALVPRYE 637
>gi|25455599|gb|AAH40185.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 [Homo sapiens]
Length = 666
Score = 308 bits (788), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 192/499 (38%), Positives = 273/499 (54%), Gaps = 52/499 (10%)
Query: 7 KSMPVLP-WMRSP--VDVSLFED-CPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQET 62
K P LP W+ P V ++ ED P++ +P + P L+ L+ GISS FPVQ AV
Sbjct: 173 KVKPFLPRWLAEPNCVRRNVTEDLVPIEDIPDVHPDLQKQLRAHGISSYFPVQAAVIPAL 232
Query: 63 ---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
+G G + DLC+++PTGSGKTL++ +P+VQ L +R V +RALVVLPT++
Sbjct: 233 LESAACGFLVGRGGYRLSDLCVSAPTGSGKTLAFVIPVVQALLSRVVCHIRALVVLPTKE 292
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA QV VF A L V L GQ S+A E L+++ +
Sbjct: 293 LARQVSKVFNIYTDATPLRVSLVTGQKSLAKEQESLVQK-------------TADGYRCL 339
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
DI+VATPGRL+DHI+ T GF+L+ L +L++DE DR++ +Q+WLP V+
Sbjct: 340 ADIVVATPGRLVDHIDQTPGFSLQQLRFLIIDEADRMIDSMHQSWLPRVVAAA------- 392
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
F P A LK + V P L K++ SATLTQ+P KL QL LH P
Sbjct: 393 FQSEDPADPCAL--LKRRQAQAVTAASTCCPQMPLQKLLFSATLTQNPEKLQQLGLHQPR 450
Query: 293 FLTTG--------------ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVF 338
+TG +Y P L + + C KPL ++ L+ +G + + F
Sbjct: 451 LFSTGLAHRGLEDTDGDGDSGKYAFPVGLTHHYVPCSLSSKPLVVLHLVLEMGFSRVLCF 510
Query: 339 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRG 398
T+S E++HRL L+ FG + + E+S R LK F +GKIQ+L+S+DA RG
Sbjct: 511 TNSRENSHRLFLLVQAFGG--VDVAEFSSRYGPGQRRMILKQFEQGKIQLLISTDATARG 568
Query: 399 MDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDS 458
+DV+GV VVNYD P Y++TY+HR GRTARAG+ G+ FTLL K + +RF ++L +A
Sbjct: 569 IDVQGVELVVNYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLKVQERRFLRMLTEAGAPE 628
Query: 459 CPIHSIPSSLIESLRPVYK 477
H + S L++ L P Y+
Sbjct: 629 LQRHELSSKLLQPLVPRYE 647
>gi|154759257|ref|NP_778236.2| ATP-dependent RNA helicase DDX51 [Homo sapiens]
gi|229462978|sp|Q8N8A6.3|DDX51_HUMAN RecName: Full=ATP-dependent RNA helicase DDX51; AltName: Full=DEAD
box protein 51
Length = 666
Score = 307 bits (787), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 191/499 (38%), Positives = 273/499 (54%), Gaps = 52/499 (10%)
Query: 7 KSMPVLP-WMRSP--VDVSLFED-CPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQET 62
K P LP W+ P V ++ ED P++ +P + P L+ L+ GISS FPVQ AV
Sbjct: 173 KVQPFLPRWLAEPNCVRRNVTEDLVPIEDIPDVHPDLQKQLRAHGISSYFPVQAAVIPAL 232
Query: 63 ---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
+G G + DLC+++PTGSGKTL++ +P+VQ L +R V +RALVVLPT++
Sbjct: 233 LESAACGFLVGRGGYRPSDLCVSAPTGSGKTLAFVIPVVQALLSRVVCHIRALVVLPTKE 292
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA QV VF A L V L GQ S+A E L+++ +
Sbjct: 293 LAQQVSKVFNIYTDATPLRVSLVTGQKSLAKEQESLVQK-------------TADGYRCL 339
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
DI+VATPGRL+DHI+ T GF+L+ L +L++DE DR++ +Q+WLP V+
Sbjct: 340 ADIVVATPGRLVDHIDQTPGFSLQQLRFLIIDEADRMIDSMHQSWLPRVVAAA------- 392
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
F P A L+ + V P L K++ SATLTQ+P KL QL LH P
Sbjct: 393 FQSEDPADPCAL--LQRRQAQAVTAASTCCPQMPLQKLLFSATLTQNPEKLQQLGLHQPR 450
Query: 293 FLTTG--------------ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVF 338
+TG +Y P L + + C KPL ++ L+ +G + + F
Sbjct: 451 LFSTGLAHRGLEDTDGDGDSGKYAFPVGLTHHYVPCSLSSKPLVVLHLVLEMGFSRVLCF 510
Query: 339 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRG 398
T+S E++HRL L+ FG + + E+S R LK F +GKIQ+L+S+DA RG
Sbjct: 511 TNSRENSHRLFLLVQAFGG--VDVAEFSSRYGPGQRRMILKQFEQGKIQLLISTDATARG 568
Query: 399 MDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDS 458
+DV+GV VVNYD P Y++TY+HR GRTARAG+ G+ FTLL K + +RF ++L +A
Sbjct: 569 IDVQGVELVVNYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLKVQERRFLRMLTEAGAPE 628
Query: 459 CPIHSIPSSLIESLRPVYK 477
H + S L++ L P Y+
Sbjct: 629 LQRHELSSKLLQPLVPRYE 647
>gi|345314845|ref|XP_001512662.2| PREDICTED: ATP-dependent RNA helicase DDX51, partial
[Ornithorhynchus anatinus]
Length = 652
Score = 307 bits (787), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 194/500 (38%), Positives = 278/500 (55%), Gaps = 46/500 (9%)
Query: 2 EEAKKKSMPVLP-WMRSPVDV--SLFED-CPLDHLPCLDPRLKVALQNMGISSLFPVQVA 57
++A +K P LP W+ P V S+ ED P+ +P + P ++ L+ GISS FPVQ A
Sbjct: 168 KKALQKVQPFLPQWLAEPSRVRKSVTEDLVPIRDIPGIHPDVQKKLEANGISSYFPVQAA 227
Query: 58 VWQET---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVV 107
V +G G + RD+C+++PTGSGKTLS+ +P+VQ LS RAV +RALVV
Sbjct: 228 VIPVVLESATHGFLVGRGGYRPRDICVSAPTGSGKTLSFVIPVVQVLSERAVCHVRALVV 287
Query: 108 LPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQ 167
LPT++LA QV VF L V L GQ +A E L++ E Y
Sbjct: 288 LPTKELAQQVSKVFHTYTEQTALRVALITGQKPLAKEQELLVQ----ETDTGY------- 336
Query: 168 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRS 227
+S DI+VATPGRL+DHI+ T GF+L L +LV+DE DR++ Q+WLP V+
Sbjct: 337 --RSLADIVVATPGRLVDHIDQTPGFSLRQLRFLVIDEADRMIDSMQQSWLPRVMAAVFG 394
Query: 228 DNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLD 287
+ +A G + C +P L K++ SATLT++P KL QL
Sbjct: 395 GTGSG-GPGELLQRTAPGVITAASSC--------RPQMPLQKLLFSATLTRNPEKLQQLG 445
Query: 288 LHHP-LFLTTG-------ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFT 339
L+ P LF TTG + +Y P L Y + C KP+ ++ LL + + FT
Sbjct: 446 LYQPRLFSTTGTREGPAGDGKYTFPAGLSHYYVPCSLSSKPMLVLHLLHQEDFPRVLCFT 505
Query: 340 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 399
+S E++HRL L+ FG +K+ E+S R LK F +GKIQ+L+S+DA RG+
Sbjct: 506 NSRENSHRLFLLIQAFGG--VKVAEFSSRFGPGQRKLILKQFEQGKIQLLISTDATARGI 563
Query: 400 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSC 459
DVEGV V+NYD P YI++Y+HR GRTARAG+ G +T L K + ++F ++L++A +
Sbjct: 564 DVEGVKLVINYDAPHYIRSYVHRVGRTARAGRTGLAYTFLLKVQEQKFLRMLREAGAPAL 623
Query: 460 PIHSIPSSLIESLRPVYKSV 479
+ I L+E L P Y++
Sbjct: 624 QPYPIRRELLEPLVPQYQAA 643
>gi|297693497|ref|XP_002824054.1| PREDICTED: ATP-dependent RNA helicase DDX51 isoform 2 [Pongo
abelii]
Length = 665
Score = 307 bits (786), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 192/503 (38%), Positives = 277/503 (55%), Gaps = 52/503 (10%)
Query: 3 EAKKKSMPVLP-WMRSP--VDVSLFED-CPLDHLPCLDPRLKVALQNMGISSLFPVQVAV 58
+A K S LP W+ P V ++ ED P++ +P + P L+ L+ GISS FPVQ AV
Sbjct: 168 KAPKVSPAFLPRWLTEPSCVRKNVTEDLVPIEDIPEVHPDLQKQLRAHGISSYFPVQAAV 227
Query: 59 WQET---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108
+G G + DLC+++PTGSGKTL++ +P+VQ L +R V +RALVVL
Sbjct: 228 IPALLESAACGFLVGRGGYRPSDLCVSAPTGSGKTLAFVIPVVQALLSRVVCHIRALVVL 287
Query: 109 PTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQE 168
PT++LA QV VF A L V L GQ S+A E L+++
Sbjct: 288 PTKELAQQVSKVFNIYTDATPLRVSLVTGQKSLAKEQESLVQK-------------TADG 334
Query: 169 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSD 228
+ DI+VATPGRL+DHI+ T GF+L+ L +LV+DE DR++ +Q+WLP V+
Sbjct: 335 YRCLADIVVATPGRLVDHIDQTPGFSLQQLRFLVIDEADRMIDSMHQSWLPRVVAAA-FQ 393
Query: 229 NENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDL 288
+E+ + F ++ C P L K++ SATLTQ+P KL QL L
Sbjct: 394 SEDPADPCALFQRRQAQAVTAASTCC--------PQMPLQKLLFSATLTQNPEKLQQLGL 445
Query: 289 HHPLFLTTGET--------------RYKLPERLESYKLICESKLKPLYLVALLQSLGEEK 334
H P +TG T +Y P L + + C KPL ++ L+ +G +
Sbjct: 446 HQPRLFSTGLTHRGLEDTDGDGDSEKYAFPVGLTHHYVPCSLNSKPLVVLHLVLEMGFSR 505
Query: 335 CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394
+ FT+S E++HRL L+ FG + + E+S R LK F +GKIQ+L+S+DA
Sbjct: 506 VLCFTNSRENSHRLFLLVQAFGG--VDVAEFSSRYGPGQRRMILKQFEQGKIQLLISTDA 563
Query: 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 454
RG+DV+GV VVNYD P Y++TY+HR GRTARAG+ G+ FTLL K + +RF ++L +A
Sbjct: 564 TARGIDVQGVELVVNYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLKVQERRFLRMLTEA 623
Query: 455 DNDSCPIHSIPSSLIESLRPVYK 477
H + S L++ L P Y+
Sbjct: 624 GAPELQRHELSSKLLQPLVPRYE 646
>gi|348550777|ref|XP_003461207.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase
DDX51-like [Cavia porcellus]
Length = 677
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 188/500 (37%), Positives = 276/500 (55%), Gaps = 53/500 (10%)
Query: 7 KSMPVLP-WMRSP--VDVSLFED-CPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQET 62
K P LP W+ +P V ++ +D P++ +P + P L+ L+ GIS+ FPVQ AV
Sbjct: 183 KVQPFLPAWLANPSCVKKNVTKDLVPIEDIPEVHPDLQKQLRAHGISAYFPVQAAVIPAV 242
Query: 63 ---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
+G G ++ DLC+++PTGSGKTL++ +P+VQ L +R V +RALVVLPT++
Sbjct: 243 LESSASGFLVGRGGYQPSDLCVSAPTGSGKTLAFVIPVVQALLHRVVCHIRALVVLPTKE 302
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA QV VF A L V L GQ +A E L+++ +
Sbjct: 303 LAQQVSRVFNVYTDATPLRVALVTGQKPLAKEQESLVQK-------------TADGYRCL 349
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
DI+VATPGRL+DHI+ T+GF+L+ L +L+VDE DR++ +Q+WLP V+
Sbjct: 350 ADIVVATPGRLVDHIDQTQGFSLQQLRFLIVDEADRMIDSMHQSWLPRVMAAA------- 402
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
F P+ L+ R V P L K++ SATLTQ+P KL +L L+ P
Sbjct: 403 FPCEGPTDPATL--LQRRRAPAVTAASTCCPQMPLQKLLFSATLTQNPEKLQRLGLYLPR 460
Query: 293 FLTT---------------GETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIV 337
+T E +Y P L + + C KPL ++ L+ + + +
Sbjct: 461 LFSTRLAHRALEDDTAGGDPEGKYAFPSGLTHHYVPCSLNAKPLAIIHLVLGMSISRTLC 520
Query: 338 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTR 397
FT+S E++HRL L+ FG + + E+S R K LK F +GKIQ+L+S+DA R
Sbjct: 521 FTNSRENSHRLFLLVQAFGG--VSVAEFSACYGPGHRRKILKQFEQGKIQLLISTDATAR 578
Query: 398 GMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADND 457
G+DV GV V+NYD P Y++TY+HR GRTARAG++GR FTLL K + +RF ++L +A
Sbjct: 579 GIDVPGVELVINYDAPQYLRTYVHRVGRTARAGRMGRAFTLLLKVQERRFLRMLAEAGAP 638
Query: 458 SCPIHSIPSSLIESLRPVYK 477
H +PS L++ L P Y+
Sbjct: 639 ELVRHEVPSKLLQPLVPRYE 658
>gi|403292279|ref|XP_003945289.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX51,
partial [Saimiri boliviensis boliviensis]
Length = 553
Score = 306 bits (784), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 191/499 (38%), Positives = 275/499 (55%), Gaps = 52/499 (10%)
Query: 7 KSMPVLP-WMRSP--VDVSLFED-CPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQET 62
K P LP W+ P V ++ ED P++ +P + P L+ L+ GISS FPVQ AV
Sbjct: 60 KVQPFLPKWLAEPSCVRKNVTEDLVPIEDIPEVHPELQKQLRAHGISSYFPVQAAVIPAL 119
Query: 63 ---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
+G G + DLC+++PTGSGKTL++ +P+VQ L +R V +RALVVLPT++
Sbjct: 120 LESAACGFLVGRGGYRPSDLCVSAPTGSGKTLAFVIPVVQALLSRVVCHVRALVVLPTKE 179
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA QV VF A L V L GQ S+A E L+++ +
Sbjct: 180 LAQQVSKVFNIYTDATPLRVSLITGQKSLAKEQDSLVQK-------------TADGYRCL 226
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
DI+VATPGRL+DHI+ T GF+L+ L +L++DE DR++ +Q+WLP V+
Sbjct: 227 ADIVVATPGRLVDHIDQTPGFSLQQLRFLIIDEADRMIDSMHQSWLPRVVAAA------- 279
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
F P A L+ + V P L K++ SATLTQ+P KL QL LH P
Sbjct: 280 FQSEDPAEPCAL--LQRRQAQAVTAASTCCPQMPLQKLLFSATLTQNPEKLQQLGLHQPR 337
Query: 293 FLTTG-------ET-------RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVF 338
+TG ET +Y P L + + C KPL ++ L+ +G + + F
Sbjct: 338 LFSTGLAHRGPEETDGDRESGKYAFPAGLTHHYVPCSLSSKPLVVLHLVLEMGFSRVLCF 397
Query: 339 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRG 398
T+S E++HRL L+ FG + + E+S R LK F +GKIQ+L+S+DA RG
Sbjct: 398 TNSRENSHRLFLLVQAFGG--VDVAEFSSRYGPGQRKAILKQFEQGKIQLLISTDATARG 455
Query: 399 MDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDS 458
+DV+GV VVNYD P Y++TY+HR GRTARAG+ G+ FTLL + + +RF ++L ++
Sbjct: 456 IDVQGVELVVNYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLRVQERRFLRMLAESGAPE 515
Query: 459 CPIHSIPSSLIESLRPVYK 477
H + S L++ L P Y+
Sbjct: 516 LQRHELSSKLLQPLVPKYE 534
>gi|410976432|ref|XP_003994624.1| PREDICTED: ATP-dependent RNA helicase DDX51 [Felis catus]
Length = 538
Score = 306 bits (784), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 193/519 (37%), Positives = 275/519 (52%), Gaps = 66/519 (12%)
Query: 10 PVLP-WMRSP--VDVSLFED-CPLDHLPCLDPRLKVALQNMGISSLFPVQVAV----WQE 61
P LP W+ P V S+ ED P++ +P + P ++ L+ GISS FPVQ AV +
Sbjct: 16 PFLPSWLAEPSCVGKSVTEDSVPIEDIPAVHPDMQKQLRAHGISSYFPVQAAVIPALLES 75
Query: 62 TIGPGLFER------DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115
T L R DLC+++PTGSGKTL++ +P+VQ L RAV +RALVVLPT++LA
Sbjct: 76 TANGFLVARGGYRPSDLCVSAPTGSGKTLAFVIPVVQALLCRAVCQVRALVVLPTKELAQ 135
Query: 116 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDI 175
QV VF A L V L GQ S+ E L++R + D+
Sbjct: 136 QVSKVFNVYTDATPLRVALITGQKSLVKEQETLVQR-------------TADGFRCLADV 182
Query: 176 LVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR--- 232
+VATPGRL+DHI+ T GF+L HL +LV+DE DR++ +Q+WLP V++ + +
Sbjct: 183 VVATPGRLVDHIDQTPGFSLRHLRFLVIDEADRMIDSMHQSWLPRVVEAAFPSDSAKDPC 242
Query: 233 ----------FSDASTFLPSAFGSLKTIRRCGVERGFKDK---------PYPRLVKMVLS 273
+ A LP + + C ++G + P L K++ S
Sbjct: 243 ALLQRRQLRATTAARPALPWRVPGGQVQQVCRPDQGRRPTARSPSSTCCPQMPLQKLLFS 302
Query: 274 ATLTQDPNKLAQLDLHHPLFLTTGETR---------------YKLPERLESYKLICESKL 318
ATLTQ+P KL QL LH P +TG R Y P L + C +
Sbjct: 303 ATLTQNPEKLQQLGLHQPRLFSTGLARGGPKDADADGDSGGKYTFPAGLSHCYVPCSLRT 362
Query: 319 KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTL 378
KPL ++ L+ + + + FT+S E++HRL L+ FG + E+S R L
Sbjct: 363 KPLVILHLILEMNFSRVLCFTNSRENSHRLFLLVQAFGG--VTAAEFSSRCGPGQRKAVL 420
Query: 379 KAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 438
K F +GKI++L+S+DA RG+D++GV VVNYD P Y++TY+HR GRTARAG+ GR FTL
Sbjct: 421 KQFEQGKIRLLISTDATARGIDMQGVQLVVNYDAPQYLRTYVHRVGRTARAGRTGRAFTL 480
Query: 439 LHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYK 477
L K + +RF ++L +A H IP L+ L P Y+
Sbjct: 481 LLKVQERRFLRMLAEAGAPELARHDIPGELLRPLVPRYE 519
>gi|21756727|dbj|BAC04942.1| unnamed protein product [Homo sapiens]
gi|326205429|dbj|BAJ84089.1| ATP-dependent RNA helicase DDX51 [Homo sapiens]
Length = 666
Score = 305 bits (781), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 190/499 (38%), Positives = 272/499 (54%), Gaps = 52/499 (10%)
Query: 7 KSMPVLP-WMRSP--VDVSLFED-CPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQET 62
K P LP W+ P V ++ ED P++ +P + P L+ L+ GISS FPVQ AV
Sbjct: 173 KVQPFLPRWLAEPNCVRRNVTEDLVPIEDIPDVHPDLQKQLRAHGISSYFPVQAAVIPAL 232
Query: 63 ---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
+G G + DLC+++PTGSGKTL++ +P+VQ L +R V +RALVVLPT++
Sbjct: 233 LESAACGFLVGRGGYRPSDLCVSAPTGSGKTLAFVIPVVQALLSRVVCHIRALVVLPTKE 292
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA QV VF A L V L GQ S+ E L+++ +
Sbjct: 293 LAQQVSKVFNIYTDATPLRVSLVTGQKSLVKEQESLVQK-------------TADGYRCL 339
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
DI+VATPGRL+DHI+ T GF+L+ L +L++DE DR++ +Q+WLP V+
Sbjct: 340 ADIVVATPGRLVDHIDQTPGFSLQQLRFLIIDEADRMIDSMHQSWLPRVVAAA------- 392
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
F P A L+ + V P L K++ SATLTQ+P KL QL LH P
Sbjct: 393 FQSEDPADPCAL--LQRRQAQAVTAASTCCPQMPLQKLLFSATLTQNPEKLQQLGLHQPR 450
Query: 293 FLTTG--------------ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVF 338
+TG +Y P L + + C KPL ++ L+ +G + + F
Sbjct: 451 LFSTGLAHRGLEDTDGDGDSGKYAFPVGLTHHYVPCSLSSKPLVVLHLVLEMGFSRVLCF 510
Query: 339 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRG 398
T+S E++HRL L+ FG + + E+S R LK F +GKIQ+L+S+DA RG
Sbjct: 511 TNSRENSHRLFLLVQAFGG--VDVAEFSSRYGPGQRRMILKQFEQGKIQLLISTDATARG 568
Query: 399 MDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDS 458
+DV+GV VVNYD P Y++TY+HR GRTARAG+ G+ FTLL K + +RF ++L +A
Sbjct: 569 IDVQGVELVVNYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLKVQERRFLRMLTEAGAPE 628
Query: 459 CPIHSIPSSLIESLRPVYK 477
H + S L++ L P Y+
Sbjct: 629 LQRHELSSKLLQPLVPRYE 647
>gi|296213300|ref|XP_002753212.1| PREDICTED: ATP-dependent RNA helicase DDX51 [Callithrix jacchus]
Length = 797
Score = 305 bits (781), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 192/499 (38%), Positives = 274/499 (54%), Gaps = 52/499 (10%)
Query: 7 KSMPVLP-WMRSP--VDVSLFED-CPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQET 62
K P LP W+ P V ++ ED P++ +P + P L+ L+ GISS FPVQ AV
Sbjct: 174 KVQPFLPKWLAEPSCVRKNVTEDLVPIEDIPEVHPDLQKQLRAHGISSYFPVQAAVIPAL 233
Query: 63 ---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
+G G + DLC+++PTGSGKTL++ +P+VQ L +R V +RALVVLPT++
Sbjct: 234 LESAACGFLVGRGGYRPSDLCVSAPTGSGKTLAFVIPVVQALLSRVVCHVRALVVLPTKE 293
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA QV VF A L V L GQ S+A E L+++ +
Sbjct: 294 LAQQVSRVFNIYTDATPLRVSLVTGQKSVAKEQESLVQK-------------TADGYRCL 340
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
DI+VATPGRL+DHI+ T GF+L+ L +L++DE DR++ +Q+WLP V+
Sbjct: 341 ADIVVATPGRLVDHIDQTPGFSLQQLRFLIIDEADRMIDSMHQSWLPRVVAAA------- 393
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
F P A L+ + V P L K++ SATLTQ+P KL QL LH P
Sbjct: 394 FQSEDPADPCAL--LQRRQAQAVTAASTCCPQMPLQKLLFSATLTQNPEKLQQLGLHQPR 451
Query: 293 FLTTG-------ET-------RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVF 338
+TG ET +Y P L + + C KPL ++ L+ +G + + F
Sbjct: 452 LFSTGLAHRGPEETGGDRESGKYAFPVGLTHHYVPCSLSSKPLVILHLVLEMGFSRVLCF 511
Query: 339 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRG 398
T+S E++HRL L+ FG + + E+S R LK F +GKIQ+L+S+DA RG
Sbjct: 512 TNSRENSHRLFLLVQAFGG--VDVAEFSSRYGPGQRRAILKQFEQGKIQLLISTDATARG 569
Query: 399 MDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDS 458
+DV+GV VVNYD P Y++TY+HR GRTARAG+ G+ FTLL K + +RF ++L +A +
Sbjct: 570 IDVQGVELVVNYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLKVQERRFLRMLAEAGAPA 629
Query: 459 CPIHSIPSSLIESLRPVYK 477
H +P L+ L Y+
Sbjct: 630 LQRHELPGKLLRPLVSRYE 648
>gi|397487104|ref|XP_003814650.1| PREDICTED: ATP-dependent RNA helicase DDX51, partial [Pan paniscus]
Length = 529
Score = 305 bits (781), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 189/499 (37%), Positives = 273/499 (54%), Gaps = 52/499 (10%)
Query: 7 KSMPVLP-WMRSP--VDVSLFED-CPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQET 62
K P LP W+ P V ++ ED P++ +P + P L+ L+ GIS FPVQ AV
Sbjct: 36 KVQPFLPRWLAEPNCVRKNVTEDLVPIEDIPDVHPDLQKQLRAHGISFYFPVQAAVIPAL 95
Query: 63 ---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
+G G + DLC+++PTGSGKTL++ +P+VQ L +R V +RALVVLPT++
Sbjct: 96 LESAACGFLVGRGGYRPSDLCVSAPTGSGKTLAFVIPVVQALLSRVVCHIRALVVLPTKE 155
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA QV VF A L V L GQ S+A E L+++ +
Sbjct: 156 LAQQVSKVFNIYTDATSLRVSLVTGQKSLAKEQESLVQK-------------TADGYRCL 202
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
DI+VATPGRL+DHI+ T GF+L+ L +LV+DE DR++ +Q+WLP V+ +E+
Sbjct: 203 ADIVVATPGRLVDHIDQTPGFSLQQLRFLVIDEADRMIDSMHQSWLPRVVAAA-FQSEDP 261
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
+ F ++ C P L K++ SATLTQ+P KL QL LH P
Sbjct: 262 ADPCALFQRRQAQAVTAASTCC--------PQMPLQKLLFSATLTQNPEKLQQLGLHQPR 313
Query: 293 FLTTG--------------ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVF 338
+TG +Y P L + + C KPL ++ L+ +G + + F
Sbjct: 314 LFSTGLAHRGLEDTDGDGDSGKYAFPVGLTHHYVPCSLSSKPLVVLHLVLEMGFSRVLCF 373
Query: 339 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRG 398
T+S E++HRL L+ FG + + E+S R LK F +GKIQ+L+S+DA RG
Sbjct: 374 TNSRENSHRLFLLVQAFGG--VDVAEFSSRYGPGQRRMILKQFEQGKIQLLISTDATARG 431
Query: 399 MDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDS 458
+DV+GV VVNYD P Y++TY+HR GRTARAG+ G+ FTLL K + +RF ++L +A
Sbjct: 432 IDVQGVELVVNYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLKVQERRFLRMLTEAGAPE 491
Query: 459 CPIHSIPSSLIESLRPVYK 477
H + S L++ L P Y+
Sbjct: 492 LQRHELSSKLLQPLVPRYE 510
>gi|449281559|gb|EMC88606.1| ATP-dependent RNA helicase DDX51, partial [Columba livia]
Length = 489
Score = 305 bits (781), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 195/499 (39%), Positives = 278/499 (55%), Gaps = 60/499 (12%)
Query: 10 PVLP-WMRSPVDVS-LFED--CPLDHLPCLDPRLKVALQNMGISSLFPVQV----AVWQE 61
P LP W+ P V +D P+ +P + PRL LQ GI S FPVQ A+ Q
Sbjct: 6 PFLPQWLAQPKLVQKRIKDNLVPVGDIPGIHPRLLKKLQMNGIQSFFPVQAEVIPAILQS 65
Query: 62 T-----IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115
+G G + +D+C+++PTGSGKTLS+ +PIVQ L +R V +RALVVLPT++LA
Sbjct: 66 ASNGYLMGQGGYRPKDICVSAPTGSGKTLSFVIPIVQVLLDRVVCQVRALVVLPTKELAQ 125
Query: 116 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDI 175
QV VF GL V L GQ S A E L++ K G C S DI
Sbjct: 126 QVSKVFNIYTDGTGLKVVLITGQKSFAKEQEMLVQ--KKVTGYC-----------SLADI 172
Query: 176 LVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSD 235
+VATPGRL DHIN T GF+L L +LVVDE DR++ + +Q L +++ EN
Sbjct: 173 IVATPGRLTDHINQTPGFSLTQLRFLVVDEADRMIDDMHQNCLNQIVK-AAFQVENGSGS 231
Query: 236 ASTFLPSAFGSLKTIRRCGVERGFKDKPYPR--LVKMVLSATLTQDPNKLAQLDLHHPLF 293
+ F + G + C YP+ L K++ SATLTQDP KL QL+L P
Sbjct: 232 NTLFWRTKPGPITAASSC----------YPQIPLQKLLFSATLTQDPEKLQQLNLFQPRL 281
Query: 294 LTT--------GE-------TRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVF 338
T+ GE T+Y LPE L + C+ KPL L+ + ++ + + F
Sbjct: 282 FTSVYSEKKSLGEGTETEQDTKYTLPEGLSQCYVPCDLNSKPLLLLHFMLTMKFSRVLCF 341
Query: 339 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRG 398
T+S E++HRL L+ FG R+ + E+S + R +T+K F +GKIQ+L+S+DA RG
Sbjct: 342 TNSREASHRLFLLVQAFG--RVTVAEFSSRLSPNERQRTMKEFEQGKIQLLISTDATARG 399
Query: 399 MDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDS 458
+D++GVN V+NYD P +I+TYIHR GRTARAG++G F+L+ + + +RF ++L+ A
Sbjct: 400 IDIKGVNYVINYDAPQFIRTYIHRVGRTARAGEVGVAFSLVLRIQERRFLRMLKDAGIRD 459
Query: 459 CPIHSIPSSLIESLRPVYK 477
H + + SL+P+ +
Sbjct: 460 VKKHPVKGN---SLKPLVQ 475
>gi|355683374|gb|AER97086.1| DEAD box polypeptide 51 [Mustela putorius furo]
Length = 474
Score = 304 bits (778), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 181/478 (37%), Positives = 260/478 (54%), Gaps = 49/478 (10%)
Query: 25 EDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQ---ETIGPGLF-------ERDLCI 74
+ P++H+P + P ++ L+ GISS FPVQ AV E+ G RDLC+
Sbjct: 4 DSVPIEHIPAVHPDMQKKLRAHGISSYFPVQAAVIPALLESTADGFLVARGGYRPRDLCV 63
Query: 75 NSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGL 134
++PTGSGKTL++ +P+VQ L RA+ +RALVVLPT++LA QV VF A L V L
Sbjct: 64 SAPTGSGKTLAFVIPVVQALLGRAICQVRALVVLPTKELAQQVCKVFNIYTDATPLRVAL 123
Query: 135 AVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194
GQ S+ E L+++ + D++VATPGRL+DHI+ T GF+
Sbjct: 124 ITGQKSLVKEQESLVQK-------------TADGFRCLADVVVATPGRLVDHIDQTPGFS 170
Query: 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCG 254
L HL +LV+DE DR++ +Q+WLP V++ + + F L+ +
Sbjct: 171 LLHLRFLVIDEADRMIDSMHQSWLPRVVEAAFPSDGAK---------DPFVLLQRRQPQA 221
Query: 255 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR-------------- 300
P L K++ SATLTQ+P KL QL LH P +TG R
Sbjct: 222 PTAASISCPQMPLQKLLFSATLTQNPEKLQQLGLHQPWLFSTGLARRDPGDSDADRDSGG 281
Query: 301 -YKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELR 359
Y P L + + C + KPL ++ L+ + + FT+S E++HRL L+ FG
Sbjct: 282 KYAFPAGLSHHYVPCSLRTKPLAILHLILEKNFSRVLCFTNSRENSHRLFLLVQAFGG-- 339
Query: 360 IKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTY 419
+ E+S R LK F +GKIQ+L+S+DA RG+DV+GV VVNYD P Y++TY
Sbjct: 340 VTAAEFSSRCGPGQRKAVLKQFEQGKIQLLISTDATARGIDVQGVQLVVNYDAPQYLRTY 399
Query: 420 IHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYK 477
+HR GRTARAG+ G+ FTLL K + +RF ++L +A IPS L++ L P Y+
Sbjct: 400 VHRVGRTARAGRTGQAFTLLLKVQERRFLRMLAEAGVPDMTRQDIPSELLQPLVPRYE 457
>gi|224072122|ref|XP_002196880.1| PREDICTED: ATP-dependent RNA helicase DDX51-like [Taeniopygia
guttata]
Length = 707
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 196/507 (38%), Positives = 275/507 (54%), Gaps = 56/507 (11%)
Query: 6 KKSMPVLP-WMRSPVDVS-LFED--CPLDHLPCLDPRLKVALQNMGISSLFPVQV----A 57
+K P LP W+ P V D CP+ ++P + P+L LQ GI S FPVQ A
Sbjct: 212 QKVQPFLPQWLAEPKRVQKRIRDNLCPVRNMPGIHPQLLKKLQRNGIDSFFPVQAEVIPA 271
Query: 58 VWQET-----IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111
+ Q +G G + +D+C+++PTGSGKTLS+ +PIVQ L +R V +RALVVLPT+
Sbjct: 272 ILQSAANGYLLGRGGYRPKDICVSAPTGSGKTLSFVIPIVQVLLDRVVCHVRALVVLPTK 331
Query: 112 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 171
+LA QV VF GL V L GQ S A E L++ K G C S
Sbjct: 332 ELAQQVSKVFNIYTDGTGLKVVLITGQKSFAKEQEMLVE--KKVTGYC-----------S 378
Query: 172 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN 231
DI+VATPGRL DHIN T GF+L L +LVVDE DR++ + +Q L +++ EN
Sbjct: 379 LADIVVATPGRLTDHINQTPGFSLTQLRFLVVDEADRMIDDMHQNCLNQIVKAA-FQGEN 437
Query: 232 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 291
F + G L C P L K++ SATLTQDP KL QLDL P
Sbjct: 438 SSGSNMLFQRTKPGPLTAASSCS--------PQIPLQKLLFSATLTQDPEKLQQLDLFQP 489
Query: 292 LFLTT---------GET------RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCI 336
T+ ET +Y LPE L + C+ KPL L+ + + + +
Sbjct: 490 RLFTSVYSEKNRDGTETEQDTTNKYTLPEGLSQCYVPCDLNSKPLLLLYFMLKMKFTRVL 549
Query: 337 VFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT 396
FT+S E++HRL L+ FG I + E+S + R +T+K F +GKIQ+L+S+DA
Sbjct: 550 CFTNSREASHRLFLLVQAFGG--ITVAEFSSRLTPNERKRTMKEFEQGKIQLLISTDATA 607
Query: 397 RGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 456
RG+DV+ VN V+NYD P +I+TY+HR GRTARAG+ G F+L+ + + +RF ++L+ A
Sbjct: 608 RGIDVKRVNYVINYDAPQFIRTYVHRVGRTARAGEAGVAFSLVLRIQERRFLRMLRDAGI 667
Query: 457 DSCPIHSIPSSLIESLRPVYKSVRGGI 483
H + + SL+P+ + G +
Sbjct: 668 RDIKKHPVKGN---SLKPLVQQYEGAL 691
>gi|410047553|ref|XP_003954509.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX51,
partial [Pan troglodytes]
Length = 497
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 186/491 (37%), Positives = 270/491 (54%), Gaps = 51/491 (10%)
Query: 14 WMRSP--VDVSLFED-CPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQET-------- 62
W+ P V ++ ED P++ +P + P L+ L+ GISS FPVQ AV
Sbjct: 12 WLAEPXCVRKNVTEDLVPIEDIPDVHPDLQKQLRAHGISSYFPVQAAVIPALLESAACGF 71
Query: 63 -IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV 120
+G G + DLC+++PTGSGKTL++ +P+VQ L +R V +RALVVLPT++LA QV V
Sbjct: 72 LVGRGGYRPSDLCVSAPTGSGKTLAFVIPVVQALLSRVVCHIRALVVLPTKELAQQVSKV 131
Query: 121 FAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180
F A L V L GQ S+A E L+++ + DI+VATP
Sbjct: 132 FNIYTDATPLRVSLVTGQKSLAKEQESLVQK-------------TADGYRCLADIVVATP 178
Query: 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFL 240
GRL+DHI+ T GF+L+ L +LV+DE DR++ +Q+WLP V+ +E+ + F
Sbjct: 179 GRLVDHIDQTPGFSLQQLRFLVIDEADRMIDSMHQSWLPRVVAAA-FQSEDPADPCALFQ 237
Query: 241 PSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG--- 297
++ C P L K++ SATLTQ+P KL QL LH P +TG
Sbjct: 238 RRQAQAVTAASTCC--------PQMPLQKLLFSATLTQNPEKLQQLGLHQPRLFSTGLAH 289
Query: 298 -----------ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTH 346
+Y P L + + C KPL ++ L+ +G + + FT+S E++H
Sbjct: 290 RGLEDTDGDGDSGKYAFPVGLTHHYVPCSLSSKPLVVLHLVLEMGFSRVLCFTNSRENSH 349
Query: 347 RLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNN 406
RL L+ FG + + E+S R LK F +GKIQ+L+S+DA RG+DV+GV
Sbjct: 350 RLFLLVQAFGG--VDVAEFSSRYGPGQRRMILKQFEQGKIQLLISTDATARGIDVQGVEL 407
Query: 407 VVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPS 466
VVNYD P Y++TY+HR GRTARAG+ G+ FTLL K + +RF ++L +A H + S
Sbjct: 408 VVNYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLKVQERRFLRMLTEAGAPELQRHELSS 467
Query: 467 SLIESLRPVYK 477
L++ L P Y+
Sbjct: 468 KLLQPLVPRYE 478
>gi|441630929|ref|XP_004093170.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX51,
partial [Nomascus leucogenys]
Length = 684
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 189/499 (37%), Positives = 273/499 (54%), Gaps = 52/499 (10%)
Query: 7 KSMPVLP-WMRSP--VDVSLFED-CPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQET 62
K P LP W+ P V ++ ED P++ +P + P L+ L+ GISS FPVQ AV
Sbjct: 83 KVQPFLPRWLAEPSCVRKNVTEDLVPIEDVPEVHPDLQKQLRAHGISSYFPVQAAVIPAL 142
Query: 63 ---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
+G G + DLC+++PTGSGKTL++ +P+VQ L +R V +RALVVLPT++
Sbjct: 143 LESAACGFLVGRGGYRPSDLCVSAPTGSGKTLAFVIPVVQALLSRVVCHIRALVVLPTKE 202
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA QV VF A L V L GQ S+A E L+++ +
Sbjct: 203 LAQQVSKVFNIYTDATPLRVSLVTGQKSLAKEQESLVQK-------------TADGYRCL 249
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
DI+VATPGRL+DHI+ T GF+L+ L +LV+DE DR++ +Q+WLP V+ +E+
Sbjct: 250 ADIVVATPGRLVDHIDQTPGFSLQQLRFLVIDEADRMIDSMHQSWLPRVVAAA-FQSEDS 308
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
+ F ++ C P L K++ SATLTQ+P KL QL LH P
Sbjct: 309 ADPCALFQRRQAQAVTAASTCC--------PQMPLQKLLFSATLTQNPEKLQQLGLHQPR 360
Query: 293 FLTTG--------------ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVF 338
+TG +Y P L + + C KPL ++ L+ +G + + F
Sbjct: 361 LFSTGLAHRGLEDTDGDGDSGKYAFPVGLTHHYVPCSLSSKPLVVLHLVLEMGFSRVLCF 420
Query: 339 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRG 398
T+S E++HRL L+ FG + + E+S R LK +GKIQ+L+S+DA RG
Sbjct: 421 TNSRENSHRLFLLVQAFGG--VDVAEFSSRYGPXQRRMILKQXEQGKIQLLISTDATARG 478
Query: 399 MDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDS 458
+DV+GV VVNYD P Y++TY+HR GRTARAG+ G+ FTLL K + +RF ++L +A
Sbjct: 479 IDVQGVELVVNYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLKVQERRFLRMLTEAGAPE 538
Query: 459 CPIHSIPSSLIESLRPVYK 477
H + S L++ L P Y+
Sbjct: 539 LQRHELSSKLLQPLVPRYE 557
>gi|395513523|ref|XP_003760973.1| PREDICTED: ATP-dependent RNA helicase DDX51 [Sarcophilus harrisii]
Length = 668
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 189/504 (37%), Positives = 275/504 (54%), Gaps = 60/504 (11%)
Query: 7 KSMPVLP-WMRSP--VDVSLFED-CPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQET 62
K P LP W+ P V S+ D P+ +P + P L+ L+ GI S FPVQ AV
Sbjct: 175 KVQPFLPKWLAEPSRVQKSVKNDLVPIQDIPGIHPCLQKKLKTNGILSYFPVQAAVIPAL 234
Query: 63 ---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
+G G ++ D+C+++PTGSGKTLS+ +P++Q L R V +RALVVLPT++
Sbjct: 235 LESASHGFLVGKGGYQPSDICVSAPTGSGKTLSFVIPVIQVLLERVVCHIRALVVLPTKE 294
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA QV VF A GL V GQ S+A E L++ K ++G S
Sbjct: 295 LAQQVSKVFNVYADGTGLRVAQITGQKSLAKEQEILVQ--KTDSG-----------YHSL 341
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
DI+VATPGRL+DHI+ T GF+L L +L++DE DR++ +Q+WLP V++ ++
Sbjct: 342 ADIVVATPGRLVDHIDQTPGFSLRQLRFLIIDEADRMIDSMHQSWLPRVVKAVFHGDD-- 399
Query: 233 FSDASTFLPSAFGSLKTIRRC---GVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH 289
A GS RR + +P L K++ SATLT++P KL +L L+
Sbjct: 400 ----------APGSSPLFRRVEPRAITAASTSQPQMPLQKLLFSATLTRNPEKLQELGLY 449
Query: 290 HPLFLTTG----------------ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEE 333
P +TG E +Y P L + + C KPL ++ L+++L
Sbjct: 450 QPRLFSTGLESQESTVQPGIEQDVEGKYAFPAGLSHFYVPCSLNSKPLVILHLMRNLKFS 509
Query: 334 KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 393
+ + FT+S E +HRL L+ FG I + E+S R LK F +GKIQ+L+S+D
Sbjct: 510 RVLCFTNSREHSHRLFLLVKAFGG--IPVAEFSSRFGPGQRKMILKQFEQGKIQLLISTD 567
Query: 394 AMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQK 453
A RG+DV+GV V+NYD P YI+TY+HR GRTARAG G FTLL K + ++F ++L++
Sbjct: 568 ATARGIDVKGVKLVINYDAPQYIRTYVHRVGRTARAGHTGLAFTLLLKVQEQKFLQMLRE 627
Query: 454 ADNDSCPIHSIPSSLIESLRPVYK 477
A H + + ++SL P Y+
Sbjct: 628 ARAPELGKHLVRNEHLKSLVPQYE 651
>gi|326929902|ref|XP_003211092.1| PREDICTED: ATP-dependent RNA helicase DDX51-like [Meleagris
gallopavo]
Length = 582
Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 193/506 (38%), Positives = 279/506 (55%), Gaps = 61/506 (12%)
Query: 6 KKSMPVLP-WMRSP--VDVSLFED-CPLDHLPCLDPRLKVALQNMGISSLFPVQV----A 57
+K P LP W+ P V + E+ P+ +P + P+L LQ GI S FPVQ A
Sbjct: 85 QKVQPFLPHWLAQPKLVQKRIKENLTPIKDVPGIHPKLLKKLQMNGIESFFPVQAEVIPA 144
Query: 58 VWQET-----IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111
V Q +G G + +D+C+++PTGSGKTLS+ +PIVQ L +R V +RALVVLPT+
Sbjct: 145 VLQSASNGYLMGQGGYRPKDICVSAPTGSGKTLSFVIPIVQVLLDRVVCQVRALVVLPTK 204
Query: 112 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 171
+LA QV VF GL V L GQ S A E L++ K G C S
Sbjct: 205 ELAQQVGKVFNIYTDGTGLKVVLITGQKSFAKEQEMLVQ--KKVTGYC-----------S 251
Query: 172 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT-RSDNE 230
DI+VATPGRL DHI+ T GF+L L +L++DE DR++ + +Q WL V++ +++NE
Sbjct: 252 LADIIVATPGRLADHISKTPGFSLTQLRFLIIDEADRMIDDMHQNWLNQVVKAAFQAENE 311
Query: 231 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPR--LVKMVLSATLTQDPNKLAQLDL 288
+ + F + G + C YP+ L K++ SATLTQDP KL QL L
Sbjct: 312 D--GSNTLFQRTKPGPVTAAGCC----------YPQIPLQKLLFSATLTQDPEKLQQLGL 359
Query: 289 HHPLFLTT-----------------GETRYKLPERLESYKLICESKLKPLYLVALLQSLG 331
P T+ E +Y LPE L + C+ KPL L+ + +
Sbjct: 360 FQPCLFTSVYSEKKPLRDGTETEQDSEEKYTLPEELSQSYVPCDLNSKPLLLLHFMLTKK 419
Query: 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVS 391
+ + FT+S E++HRL L+ FG I + E+S + R +TLK F +GKIQ+L+S
Sbjct: 420 FTRVLCFTNSREASHRLFLLVQAFG--GITVAEFSSRLPPNERKRTLKEFEQGKIQLLIS 477
Query: 392 SDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLL 451
+DA RG+D++GVN V+NYD P +I+TYIHR GRTARAG+ G F+++ + + +RF ++L
Sbjct: 478 TDATARGIDIKGVNCVINYDTPQFIRTYIHRVGRTARAGKAGLAFSMVLRIQERRFLRML 537
Query: 452 QKADNDSCPIHSIPSSLIESLRPVYK 477
+ A H + L++ L Y+
Sbjct: 538 KDAGIPDIKQHLVKGKLLKPLVQQYE 563
>gi|426374738|ref|XP_004054220.1| PREDICTED: ATP-dependent RNA helicase DDX51 [Gorilla gorilla
gorilla]
Length = 641
Score = 302 bits (774), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 190/499 (38%), Positives = 272/499 (54%), Gaps = 52/499 (10%)
Query: 7 KSMPVLP-WMRSP--VDVSLFED-CPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQET 62
+ P LP W+ P V ++ ED P++ + + P L+ L+ GISS FPVQ AV
Sbjct: 148 RVQPFLPRWLAEPNCVRKNVTEDLVPVEDIRDVHPDLQKQLRAHGISSYFPVQAAVIPAL 207
Query: 63 ---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
+G G + DLC+++PTGSGKTL++ +P+VQ L +R V +RALVVLPT++
Sbjct: 208 LESAACGFLVGRGGYRPSDLCVSAPTGSGKTLAFVIPVVQALLSRVVCHIRALVVLPTKE 267
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA QV VF A L V L GQ S+A E L+++ +
Sbjct: 268 LAQQVSKVFNIYTDATPLRVSLVTGQKSLAKEQESLVQK-------------TADGYRCL 314
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
DI+VATPGRL+DHI+ T GF+L+ L +LV+DE DR++ +Q+WLP V+
Sbjct: 315 ADIVVATPGRLVDHIDQTPGFSLQQLRFLVIDEADRMIDSMHQSWLPRVVAAA------- 367
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
F P A L+ + V P L K++ SATLTQ+P KL QL LH P
Sbjct: 368 FQSEDPADPCAL--LQRRQAQAVTAASTCCPQMPLQKLLFSATLTQNPEKLQQLGLHQPR 425
Query: 293 FLTTG--------------ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVF 338
+TG +Y P L + + C KPL ++ L+ +G + + F
Sbjct: 426 LFSTGLAHRGLEDTDGDRDSGKYTFPVGLTHHYVPCSLNSKPLVVLHLVLEMGFSRVLCF 485
Query: 339 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRG 398
T+S E++HRL L+ FG + + E+S R LK F +GKIQ+L+S+DA RG
Sbjct: 486 TNSRENSHRLFLLVQAFGG--VDVAEFSSRYGPGQRRMILKQFEQGKIQLLISTDATARG 543
Query: 399 MDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDS 458
+DV+GV VVNYD P Y++TY+HR GRTARAG+ G+ FTLL K + +RF ++L +A
Sbjct: 544 IDVQGVELVVNYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLKVQERRFLRMLTEAGAPE 603
Query: 459 CPIHSIPSSLIESLRPVYK 477
H + S L++ L P Y+
Sbjct: 604 LQRHELSSKLLQPLVPRYE 622
>gi|449543170|gb|EMD34147.1| hypothetical protein CERSUDRAFT_125827 [Ceriporiopsis subvermispora
B]
Length = 699
Score = 301 bits (772), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 193/522 (36%), Positives = 273/522 (52%), Gaps = 75/522 (14%)
Query: 18 PVDVSLFEDCP-LDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIG---------PGL 67
P +S F+ P D L +++ L+++G+S LF VQ AV + P
Sbjct: 180 PTQLSPFDTTPDSDSGTGLSEKMRKRLKDLGVSELFAVQTAVIPFLLASSRLRSLYLPYD 239
Query: 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 127
RDLC+++PTGSGKTL+Y LPI +TL++R V LRALVVLPTRDL QV++ F A+A
Sbjct: 240 PPRDLCVSAPTGSGKTLAYVLPITETLTSRIVTRLRALVVLPTRDLVNQVRETFEAVAKG 299
Query: 128 VGLSVGLAVGQSSIADEISELI---KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLM 184
GL +G A GQ S A E ++L+ RP +Q S VDIL+ TPGRL+
Sbjct: 300 RGLKIGTATGQHSFAHEQAQLVAERSRP-------------VQGGSSKVDILICTPGRLI 346
Query: 185 DHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDA-------- 236
DH+N T F+L+HL YLV+DE DRLL +++Q WL VL T + R DA
Sbjct: 347 DHLNGTPNFSLQHLRYLVIDEADRLLAQSFQDWLAQVLSATNA--PQRLDDAETSSISEG 404
Query: 237 ---STFLPSAFGSLKTI---------RRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 284
ST P+A + R +K K++ SATLT+DP+K+A
Sbjct: 405 RLSSTSSPTAIPYPDALSPAFLHLLDRMPASTTDVDEKTEASCQKLLFSATLTRDPSKIA 464
Query: 285 QLDLHHP-LFLTTGET----------------RYKLPERLESYKLICESKLKPLYLVALL 327
L+LH P F+ T ++ +P L ++CE+ KPL L L+
Sbjct: 465 ALNLHSPKYFVVQSRTDRSDSKEDGVLNIVMEKFSMPSTLSENMIVCETSEKPLMLFHLV 524
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHF---------GELRIKIKEYSGLQRQSVRSKTL 378
+ +VFT S EST RL L F G RI +K YS S R L
Sbjct: 525 HAHSVTNALVFTKSAESTARLVRLFEFFEAAQSSTAQGSARIVVKAYSSDLSPSERKSIL 584
Query: 379 KAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 438
+ F+ KI +LV SD ++RG+D+ V++VV+YD P ++ Y+HR GRTARAG+ G +TL
Sbjct: 585 EQFKNQKIHILVCSDLISRGIDISHVSHVVSYDAPVDMRKYVHRVGRTARAGRFGSAWTL 644
Query: 439 LHKDEVKRFKKLLQKADN-DSCPIHSIPSSLIESLRPVYKSV 479
+ + E + FK +L++AD+ D + LRP Y++
Sbjct: 645 VEEQEARYFKSMLKEADHLDKVKRLRVSEKETTPLRPAYENA 686
>gi|51467974|ref|NP_001003864.1| ATP-dependent RNA helicase DDX51 [Danio rerio]
gi|82200454|sp|Q6DRI7.1|DDX51_DANRE RecName: Full=ATP-dependent RNA helicase DDX51; AltName: Full=DEAD
box protein 51
gi|49619011|gb|AAT68090.1| DEAD/H box 51 RNA helicase [Danio rerio]
Length = 652
Score = 301 bits (772), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 190/495 (38%), Positives = 267/495 (53%), Gaps = 53/495 (10%)
Query: 11 VLP-WMRSPVDVSLFEDC-----PLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQ---E 61
VLP W+ P DV + +D P+ +P + P L LQ GI S FPVQ V E
Sbjct: 168 VLPQWLSQP-DV-IQKDIKSNLIPISEVPGICPTLLRKLQTNGIQSFFPVQAEVIPAILE 225
Query: 62 TIGPGLF-------ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114
++G GL RD+C+++PTGSGKTL++ +P+VQ LS R VR +RAL VLPT++LA
Sbjct: 226 SVGSGLLVGPGGYRPRDVCVSAPTGSGKTLAFVIPVVQALSKRVVRQVRALAVLPTKELA 285
Query: 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVD 174
QV +VF+A L V + GQ S A E + L ++ G+ + S D
Sbjct: 286 QQVSNVFSAYTEGSSLKVVMITGQKSFAAEQTAL---SEIRGGVSH----------SMAD 332
Query: 175 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 234
I+VATPGRL+DHIN F+L+HL +L++DE DR++ +Q+WL V + S +
Sbjct: 333 IVVATPGRLVDHINKNSSFSLQHLRFLIIDEADRMIDSMHQSWLSQVTKAVYSTPGE--T 390
Query: 235 DASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP-LF 293
S F + G + P L K++ SATLTQ+P KL LDLH P LF
Sbjct: 391 HTSVFRRTVPGPITAASLS--------PPQIPLQKLLFSATLTQNPEKLQLLDLHQPRLF 442
Query: 294 LTT---------GETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 344
+T + + P+ L Y + C KPL ++ L L + FT+S E
Sbjct: 443 SSTHSLTDNPAQSQDTFHFPQGLSEYYVPCTFSKKPLIILHFLLRLKFSPALCFTNSREG 502
Query: 345 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 404
HRL L+ FG +++ E+S R KTLK F +GKI +L+S+DA RG+D+ GV
Sbjct: 503 AHRLYLLVKLFGG--VEVAEFSSKLSPGERQKTLKDFEKGKIPLLISTDAAARGIDINGV 560
Query: 405 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSI 464
V+NYD P YI+TYIHR GRTARAG+ G FT L K + KRF K++ A + +
Sbjct: 561 KCVINYDAPQYIRTYIHRVGRTARAGKAGLAFTFLLKVQEKRFLKMVSDAGSPGIQKQHV 620
Query: 465 PSSLIESLRPVYKSV 479
++S+ Y+ V
Sbjct: 621 HPEALKSMESRYEQV 635
>gi|440909766|gb|ELR59643.1| ATP-dependent RNA helicase DDX51, partial [Bos grunniens mutus]
Length = 542
Score = 301 bits (771), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 186/501 (37%), Positives = 270/501 (53%), Gaps = 57/501 (11%)
Query: 7 KSMPVLP-WMRSP--VDVSLFED-CPLDHLPCLDPRLKVALQNMGISSLFPVQVAV--WQ 60
K P LP W+ P V ++ E P++ +P + P L+ L+ GISS FP A+ W
Sbjct: 50 KVQPFLPVWLAQPSCVGKNVTEGLVPIEDIPEVHPDLQKKLRAQGISSYFPGAPALGRWT 109
Query: 61 ETIGPGLF-------ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113
G DLC+++PTGSGKTL++ +P+VQ L +RAV +RALVVLPT++L
Sbjct: 110 GDGANGFLVSRGGYRPSDLCVSAPTGSGKTLAFVIPVVQALLHRAVCQVRALVVLPTKEL 169
Query: 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAV 173
A QV VF A L V L GQ S+A E L+++ +
Sbjct: 170 AQQVSKVFNVYTDATPLRVALITGQKSLAKEQESLVQK-------------TADGFRCLA 216
Query: 174 DILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRF 233
DI+VATPGRL+DHI+ T GF+L+HL +L++DE DR++ +Q+WLP V+ R
Sbjct: 217 DIMVATPGRLVDHIDQTPGFSLQHLRFLIIDEADRMIDSMHQSWLPRVVAAAFPSEGPR- 275
Query: 234 SDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLF 293
+ F + L C P L K++ SATLTQ+P KL QL L+ P
Sbjct: 276 DPCAVFQRTQPRVLTAASMCC--------PQMPLQKLLFSATLTQNPEKLQQLGLYQPRL 327
Query: 294 LTTGET-----------------RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCI 336
+TG +Y P L+ + + C + KPL ++ L+ + + +
Sbjct: 328 FSTGSAHRGPSDPDIDVDEDSGGKYTFPTGLKHHYVPCSLRFKPLVILHLILEMNFSRVL 387
Query: 337 VFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT 396
FT+S E++HRL + FG + + E+S R LK F +GKIQ+L+S+DAM
Sbjct: 388 CFTNSRENSHRL---VQAFGG--VTVAEFSSRYGPGQRKGILKQFEQGKIQLLISTDAMA 442
Query: 397 RGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 456
RG+DV+GV VVNYD P Y++TY+HR GRTARAG+ G+ FTLL K + +RF ++L++
Sbjct: 443 RGIDVQGVQLVVNYDAPQYLRTYVHRVGRTARAGKSGQAFTLLLKVQERRFLRMLEEGGV 502
Query: 457 DSCPIHSIPSSLIESLRPVYK 477
H PS L++ L P Y+
Sbjct: 503 PGLERHDTPSELLQPLVPQYE 523
>gi|302683871|ref|XP_003031616.1| hypothetical protein SCHCODRAFT_55946 [Schizophyllum commune H4-8]
gi|300105309|gb|EFI96713.1| hypothetical protein SCHCODRAFT_55946 [Schizophyllum commune H4-8]
Length = 566
Score = 300 bits (769), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 182/486 (37%), Positives = 261/486 (53%), Gaps = 54/486 (11%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVW--------QETIGPGLFERDLCINSPTGSGKTLSY 86
L R + L +GI+ LF VQ A+ + P RD C+++PTGSGKTL+Y
Sbjct: 87 LSQRTRKRLHELGITELFAVQTALLPFLLANPSRAVYTPYNLPRDACVSAPTGSGKTLAY 146
Query: 87 ALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEIS 146
PIV+ LS+R LRALVV+PTRDL QVK+ F A+ GL +G+ GQ S + E S
Sbjct: 147 VTPIVEVLSSRITTRLRALVVVPTRDLVTQVKETFEAVGKGRGLKIGVVTGQHSFSHEQS 206
Query: 147 ELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDET 206
+++ D L S VDIL+ TPGRL+DH+N T FTL+HL +L++DE
Sbjct: 207 QIVG----------DSTTSLAGGTSKVDILICTPGRLIDHLNGTTNFTLQHLRFLIIDEA 256
Query: 207 DRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRC----GVERGFKDK 262
DRLL +++Q WL TVL T S + LP A + + V ++
Sbjct: 257 DRLLAQSFQGWLSTVLAATTQSTVPSTSSQDSNLPRAEAAAPHVVPALGFPNVLSRQPER 316
Query: 263 PYPRLVKMVLSATLTQDPNKLAQLDLHHPLF-----------LTTG---------ETRYK 302
P K++ SATLTQDP KLA L+LH+P + +T+G R+
Sbjct: 317 PRSSCQKLLFSATLTQDPGKLAALNLHNPKYFIVRSKAKRETITSGILPDVADVVMERFS 376
Query: 303 LPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELR--- 359
+PE L + +C+ KPL L+ S G +VFT S EST RL L F + R
Sbjct: 377 MPEGLTEHMAVCDPADKPLAFFHLITSHGIRNALVFTKSAESTTRLVRLFEFFEKARAER 436
Query: 360 --------IKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD 411
+ I YS + R L+ FR+ +IQ+LV+SD ++RG+DV V++VV+YD
Sbjct: 437 SPAGDSRPVTISAYSSDLGGAERRAILERFRKQEIQILVASDLISRGLDVSHVSHVVSYD 496
Query: 412 KPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN-DSCPIHSIPSSLIE 470
P ++ Y+HR GRTARAG+ G +TL+ + E + FK ++++AD+ S + +E
Sbjct: 497 APVDVRKYVHRVGRTARAGRAGSAWTLVEEQEARYFKNMMKEADHLPSLKKVKVDRKEME 556
Query: 471 SLRPVY 476
LRP+Y
Sbjct: 557 ELRPLY 562
>gi|354479142|ref|XP_003501772.1| PREDICTED: ATP-dependent RNA helicase DDX51, partial [Cricetulus
griseus]
Length = 552
Score = 300 bits (769), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 187/500 (37%), Positives = 273/500 (54%), Gaps = 53/500 (10%)
Query: 7 KSMPVLP-WMRSP--VDVSLFED-CPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQET 62
K P LP W+ P V S+ ED P++ +P + P L+ L+ GISS FPVQ AV
Sbjct: 58 KVQPFLPTWLAEPSCVKKSVTEDLTPIEDIPGVHPDLQKQLRANGISSYFPVQAAVIPAL 117
Query: 63 ---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
+G G ++ DLC+++PTGSGKTL++ +P+VQ L +R V +RALVVLPT++
Sbjct: 118 LESTDSGFLVGRGGYQPSDLCVSAPTGSGKTLAFVIPVVQALLHRVVCHIRALVVLPTKE 177
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA QV VF A L V L GQ S+A E L+++ + +
Sbjct: 178 LAQQVSKVFNIYTDATPLRVALVTGQKSLAKEQESLVQK-------------TVDGYRCL 224
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
DILVATPGRL+DHI+ T GF+L+ L +LV+DE DR++ +Q+WLP V+ +E
Sbjct: 225 ADILVATPGRLVDHIDQTPGFSLQQLRFLVIDEADRMIDSMHQSWLPRVVAAA-FHSEGP 283
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
+ + ++ T C F P L K++ SATLTQ+P KL +L L+ P
Sbjct: 284 SGSCALLQRTQPQAVTTASTC-----FPQMP---LQKLLFSATLTQNPEKLQRLGLYQPR 335
Query: 293 FLTT---------------GETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIV 337
+T +Y P L + + C KPL ++ L+ + + +
Sbjct: 336 LFSTRLGHKGPKDTVEVDENLGKYTFPVGLTHHYVPCRLSSKPLIVLHLVLGMNFSRALC 395
Query: 338 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTR 397
FT+S E +HRL L FG + + E+S R K LK F +GKIQ+L+S+DA R
Sbjct: 396 FTNSREHSHRLFLLAQAFGG--VSVAEFSSRYGPGQRKKILKQFEQGKIQLLISTDATAR 453
Query: 398 GMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADND 457
G+DV+GV V+NYD P Y++TY+HR GRTARAG+ G+ FTLL K + ++F +++ +A
Sbjct: 454 GIDVQGVELVINYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLKVQERKFLQMVSEAGVP 513
Query: 458 SCPIHSIPSSLIESLRPVYK 477
H IP L++ L Y+
Sbjct: 514 ELACHEIPRELLQPLVSRYE 533
>gi|449663831|ref|XP_002165436.2| PREDICTED: ATP-dependent RNA helicase DDX51-like [Hydra
magnipapillata]
Length = 734
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 181/469 (38%), Positives = 260/469 (55%), Gaps = 59/469 (12%)
Query: 6 KKSMPVLPWMRSPVDVSLFED----CPLDHLPCLDPRLKVALQNMGISSLFPVQVAV--- 58
K+++P W+ PV +S D +D L + L++ GI LFPVQ AV
Sbjct: 182 KRALP--RWLAEPVSISANIDKENESIVDSLDYITKNTINNLKSSGIEHLFPVQTAVITY 239
Query: 59 -WQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117
+T RD+C+ +PTGSGKTLSY LP++++L+ V+ L LVVLP++DLA+QV
Sbjct: 240 MHSQTKMLNFPPRDICVEAPTGSGKTLSYVLPVIESLTQYIVKELYCLVVLPSKDLAIQV 299
Query: 118 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177
K VF++ + VGL G ++ E S+L+ C P+ + + V+ILV
Sbjct: 300 KQVFSSYLKGTNIKVGLICGVKTLEKERSKLV---------CKGPQGYM----NMVEILV 346
Query: 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 237
ATPGRL+DH+ T GF+L+HL +LV+DE DRLL + Y WL VL+ +S + +F
Sbjct: 347 ATPGRLVDHLKTTSGFSLKHLRFLVIDEADRLLSQDYSGWLELVLESAQSLSYRKFPHPL 406
Query: 238 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT- 296
T R F+ P L K++ SATLTQ+P KLA L L++P+ +
Sbjct: 407 TV-----------------RTFQKNIIP-LQKLLFSATLTQNPEKLAPLRLYNPILFISK 448
Query: 297 ---------------GETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 341
E R+ +PE+L +I + +LKPL +V L+ L ++ + FT S
Sbjct: 449 RDNEKTKKDGSTENKSEFRFIVPEQLVEKMVIVKEELKPLVIVHLMLKLKYKRILCFTKS 508
Query: 342 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 401
+E+THRL LL G + E+S ++ R ++ F+ G I L+SSDAM RGMD+
Sbjct: 509 IEATHRLHLLLQSIGGFTVA--EFSSNLTETQRKGIIRDFKNGSIDALISSDAMARGMDI 566
Query: 402 EGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
+ VN VVNYD PA KTY+HR GRTARAG G T+L K +V FKK+
Sbjct: 567 DNVNMVVNYDSPANSKTYVHRVGRTARAGNRGEALTILTKKKVYPFKKM 615
>gi|118098682|ref|XP_415229.2| PREDICTED: ATP-dependent RNA helicase DDX51 [Gallus gallus]
Length = 764
Score = 300 bits (767), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 193/505 (38%), Positives = 274/505 (54%), Gaps = 59/505 (11%)
Query: 6 KKSMPVLP-WMRSP--VDVSLFED-CPLDHLPCLDPRLKVALQNMGISSLFPVQV----A 57
+K P LP W+ P V + E+ P+ +P + P+L LQ GI S FPVQ A
Sbjct: 267 QKVQPFLPHWLAQPKLVQKRIKENLIPIRDVPGIHPKLLKKLQMNGIESFFPVQAEVIPA 326
Query: 58 VWQET-----IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111
V Q +G G + +D+C+++PTGSGKTLS+ +PIVQ L +R V +RALVVLPT+
Sbjct: 327 VLQSASNGYLVGQGGYRPKDICVSAPTGSGKTLSFVIPIVQVLLDRVVCQVRALVVLPTK 386
Query: 112 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 171
+LA QV VF GL V L GQ S A E L++ K G C S
Sbjct: 387 ELAQQVSKVFNIYTDGTGLKVVLITGQKSFAKEQEMLVQ--KKVTGYC-----------S 433
Query: 172 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN 231
DI+VATPGRL DHI+ T GF+L L +L+VDE DR++ + +Q WL V++ EN
Sbjct: 434 LADIIVATPGRLADHISKTPGFSLTQLRFLIVDEADRMIDDMHQNWLNQVVKAA-FQAEN 492
Query: 232 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPR--LVKMVLSATLTQDPNKLAQLDLH 289
F + G + C YP+ L K++ SATLTQDP KL QL L
Sbjct: 493 EAGSNMLFQRTKPGPVTAASCC----------YPQIPLQKLLFSATLTQDPEKLQQLGLF 542
Query: 290 HPLFLTT-----------------GETRYKLPERLESYKLICESKLKPLYLVALLQSLGE 332
P T+ E +Y LPE L + C+ KPL L+ + +
Sbjct: 543 QPRLFTSVYSEKKTLRDGTETKEDCEEKYTLPEGLSQSYVPCDLNSKPLLLLHFMLTKKF 602
Query: 333 EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS 392
+ + FT+S E++HRL L+ FG I + E+S + R +T+K F +GKIQ+L+S+
Sbjct: 603 TRVLCFTNSREASHRLFLLVQAFGG--ITVAEFSSRLPPNERQRTMKEFEQGKIQLLIST 660
Query: 393 DAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 452
DA RG+D++GVN V+NYD P +I+TYIHR GRTARAG+ G F+++ + + +RF ++L+
Sbjct: 661 DATARGIDIKGVNCVINYDTPQFIRTYIHRVGRTARAGKAGLAFSMVLRIQERRFLRMLK 720
Query: 453 KADNDSCPIHSIPSSLIESLRPVYK 477
A H + L++ L Y+
Sbjct: 721 DAGIPDIKQHLVKGKLLKPLVQQYE 745
>gi|395332279|gb|EJF64658.1| DEAD-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 694
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 187/503 (37%), Positives = 266/503 (52%), Gaps = 67/503 (13%)
Query: 30 DHLPCLDPRLKVALQNMGISSLFPVQVAV---------WQETIGPGLFERDLCINSPTGS 80
D L R++ LQ++GI+ LF VQ AV + P DLC+++PTGS
Sbjct: 190 DERTGLSGRMRRRLQDLGITELFAVQTAVVPLLLSSPRSRALYRPYDPPEDLCVSAPTGS 249
Query: 81 GKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSS 140
GKTL+Y LPIV+ LS+R V LRALVVLPTRDL LQV++ F AIA GL +G A GQ S
Sbjct: 250 GKTLAYVLPIVEILSSRVVTRLRALVVLPTRDLVLQVRETFEAIAKGRGLKIGTATGQHS 309
Query: 141 IADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCY 200
A E ++L+ E LQ S VDIL+ TPGRL+DH+N T F+L+HL +
Sbjct: 310 FAHEQAQLVAERNEE----------LQGGSSKVDILICTPGRLIDHLNGTPNFSLQHLRF 359
Query: 201 LVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS---------------------TF 239
LV+DE DRLL +++Q WL VL TR + S AS +
Sbjct: 360 LVIDEADRLLAQSFQDWLAQVLAATRPPRASDDSGASLSSELTTASINLAARGRPHPDSL 419
Query: 240 LPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE- 298
P+ L+ + V + +K P K++ SATLT+DP K+A L L P ++
Sbjct: 420 SPTFLHLLRGVHY--VRTDYDEKKEPSCQKLLFSATLTRDPAKIAALGLRQPKYVVVQSP 477
Query: 299 ----------------TRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSV 342
++ +P L + ++CES +KPL L L+ + G +VFT S
Sbjct: 478 KTSAASKEEGVLDFVMEKFTMPATLTEHMVVCESSVKPLMLFHLVHARGVTNALVFTKSA 537
Query: 343 ESTHRLCTLLNHFGEL-------RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 395
EST RL L F RI + YS R L+ F+ +Q+LV SD +
Sbjct: 538 ESTARLVRLFEFFESAHSDSQGRRIVARAYSSDLAPGERKSILEQFKSQDVQLLVCSDLI 597
Query: 396 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 455
+RG+D+ V++VV+YD P + Y+HR GRTARAG+ G +TL+ + E + FK +L++AD
Sbjct: 598 SRGIDISHVSHVVSYDVPVDFRKYVHRVGRTARAGRAGDAWTLVEEQEARYFKTMLKEAD 657
Query: 456 N-DSCPIHSIPSSLIESLRPVYK 477
+ D + + +E L+P Y+
Sbjct: 658 HLDKVKRVRVADADVEPLKPAYE 680
>gi|344246330|gb|EGW02434.1| ATP-dependent RNA helicase DDX51 [Cricetulus griseus]
Length = 605
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 187/500 (37%), Positives = 273/500 (54%), Gaps = 53/500 (10%)
Query: 7 KSMPVLP-WMRSP--VDVSLFED-CPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQET 62
K P LP W+ P V S+ ED P++ +P + P L+ L+ GISS FPVQ AV
Sbjct: 111 KVQPFLPTWLAEPSCVKKSVTEDLTPIEDIPGVHPDLQKQLRANGISSYFPVQAAVIPAL 170
Query: 63 ---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
+G G ++ DLC+++PTGSGKTL++ +P+VQ L +R V +RALVVLPT++
Sbjct: 171 LESTDSGFLVGRGGYQPSDLCVSAPTGSGKTLAFVIPVVQALLHRVVCHIRALVVLPTKE 230
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA QV VF A L V L GQ S+A E L+++ + +
Sbjct: 231 LAQQVSKVFNIYTDATPLRVALVTGQKSLAKEQESLVQK-------------TVDGYRCL 277
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
DILVATPGRL+DHI+ T GF+L+ L +LV+DE DR++ +Q+WLP V+ +E
Sbjct: 278 ADILVATPGRLVDHIDQTPGFSLQQLRFLVIDEADRMIDSMHQSWLPRVVAAA-FHSEGP 336
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
+ + ++ T C F P L K++ SATLTQ+P KL +L L+ P
Sbjct: 337 SGSCALLQRTQPQAVTTASTC-----FPQMP---LQKLLFSATLTQNPEKLQRLGLYQPR 388
Query: 293 FLTT---------------GETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIV 337
+T +Y P L + + C KPL ++ L+ + + +
Sbjct: 389 LFSTRLGHKGPKDTVEVDENLGKYTFPVGLTHHYVPCRLSSKPLIVLHLVLGMNFSRALC 448
Query: 338 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTR 397
FT+S E +HRL L FG + + E+S R K LK F +GKIQ+L+S+DA R
Sbjct: 449 FTNSREHSHRLFLLAQAFGG--VSVAEFSSRYGPGQRKKILKQFEQGKIQLLISTDATAR 506
Query: 398 GMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADND 457
G+DV+GV V+NYD P Y++TY+HR GRTARAG+ G+ FTLL K + ++F +++ +A
Sbjct: 507 GIDVQGVELVINYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLKVQERKFLQMVSEAGVP 566
Query: 458 SCPIHSIPSSLIESLRPVYK 477
H IP L++ L Y+
Sbjct: 567 ELACHEIPRELLQPLVSRYE 586
>gi|148688064|gb|EDL20011.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 [Mus musculus]
Length = 639
Score = 299 bits (765), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 186/505 (36%), Positives = 273/505 (54%), Gaps = 59/505 (11%)
Query: 7 KSMPVLP-WMRSP--VDVSLFED-CPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQET 62
K P LP W+ P V S+ ED P++ +P + P L+ L+ GI+S FPVQ AV
Sbjct: 145 KVQPFLPAWLAKPSCVKKSVTEDLTPIEDIPEVHPDLQKQLRANGITSYFPVQAAVIPAL 204
Query: 63 ---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
IG G ++ DLC+++PTGSGKTL++ +P+VQ L +R V +RALVVLPT++
Sbjct: 205 LESADHGFLIGRGGYQPSDLCVSAPTGSGKTLAFVIPVVQALLHRVVCHIRALVVLPTKE 264
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA QV VF L V L GQ S+A E L+++ +
Sbjct: 265 LAQQVSKVFNIYTDTTPLRVALVTGQKSLAKEQESLVQK-------------TADGFRCL 311
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
DI+VATPGRL+DHI+ T GF+L+ L +L++DE DR++ +Q+WLP V+
Sbjct: 312 ADIVVATPGRLVDHIDQTPGFSLQQLRFLIIDEADRMIDSMHQSWLPRVVA--------- 362
Query: 233 FSDASTFLPSAFGSLKTIRRC---GVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH 289
A+ + GS ++R V P L K++ SATLTQDP KL +L L+
Sbjct: 363 ---AAFYSEGPTGSCALLQRTQPQAVTAASTCVPQMPLQKLLFSATLTQDPEKLQRLGLY 419
Query: 290 HPLFLTT---------------GETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEK 334
P +T +Y P L + + C KPL ++ L+ + +
Sbjct: 420 QPRLFSTRLGQQSPKDTAEVDENSGKYTFPVGLTHHYVPCRLSSKPLIVLHLVLRMSCSR 479
Query: 335 CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394
+ FT+S E++HRL L FG + + E+S R K LK F +GKIQ+L+S+DA
Sbjct: 480 ALCFTNSRENSHRLYLLAQAFGG--VSVAEFSSRYGPGQRKKILKQFEQGKIQLLISTDA 537
Query: 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 454
RG+DV+GV V+NYD P Y++TY+HR GRTARAG+ G+ FTLL K + ++F +++ +A
Sbjct: 538 TARGIDVQGVELVINYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLKVQERKFLQMVSEA 597
Query: 455 DNDSCPIHSIPSSLIESLRPVYKSV 479
H IP L++ L Y++
Sbjct: 598 GVPELTHHEIPRKLLQPLVARYETA 622
>gi|351698593|gb|EHB01512.1| ATP-dependent RNA helicase DDX51, partial [Heterocephalus glaber]
Length = 536
Score = 298 bits (762), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 187/499 (37%), Positives = 269/499 (53%), Gaps = 64/499 (12%)
Query: 14 WMRSP--VDVSLFED-CPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQET-------- 62
W+ +P V ++ +D P++ +P + P L+ L+ GISS FPVQ AV
Sbjct: 54 WLANPSCVKKNVTKDLVPIEDIPEVHPDLQKQLRARGISSYFPVQAAVIPALLENAASGF 113
Query: 63 -IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV 120
+G G ++ DLC+++PTGSGKTL++ +P+VQ L +R V +RALV+LPT++LA QV V
Sbjct: 114 LVGRGGYQPSDLCVSAPTGSGKTLAFVIPVVQALLHRVVCHVRALVMLPTKELAQQVSKV 173
Query: 121 FAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180
F A L V L GQ +A E L+++ + DI+VATP
Sbjct: 174 FNIYTDATPLRVALVTGQKPLATEQESLVQK-------------TADGFRCLADIVVATP 220
Query: 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFL 240
GRL+DHIN T GF+L+ L +LVVDE DR++ +Q+WLP V+ + L
Sbjct: 221 GRLVDHINQTPGFSLQQLRFLVVDEADRMIDSMHQSWLPRVM--------------AAAL 266
Query: 241 PSAFGS-----LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLT 295
PS + L+ R V P L K++ SATLTQ+P KL QL L+ P +
Sbjct: 267 PSKGPADPCALLQRWRPQAVTAASACCPQMPLQKLLFSATLTQNPEKLQQLGLYQPRLFS 326
Query: 296 T-----------------GETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVF 338
T E +Y P L + + C KPL ++ L+ + + F
Sbjct: 327 TRLAHRVPKDEGTEVDRDPEGKYTFPAGLTHHYVPCSLSSKPLAIMHLVVGKNFSRALCF 386
Query: 339 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRG 398
T+S E++HRL LL FG + + E+S R K LK F +GKIQ+L+S+DA RG
Sbjct: 387 TNSRENSHRLFLLLQAFGG--VSVAEFSSRYGPGHRRKVLKQFEQGKIQLLISTDATARG 444
Query: 399 MDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDS 458
+DV GV V+NYD P Y++TY+HR GRTARAG+ G+ FTLL K + + F ++L +
Sbjct: 445 IDVLGVELVINYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLKVQERTFLRMLAEGGAPE 504
Query: 459 CPIHSIPSSLIESLRPVYK 477
H IPS L++ L P Y+
Sbjct: 505 LARHEIPSKLLQPLVPRYE 523
>gi|74220751|dbj|BAE31347.1| unnamed protein product [Mus musculus]
Length = 639
Score = 298 bits (762), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 185/505 (36%), Positives = 273/505 (54%), Gaps = 59/505 (11%)
Query: 7 KSMPVLP-WMRSP--VDVSLFED-CPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQET 62
K P LP W+ P V S+ ED P++ +P + P L+ L+ GI+S FPVQ AV
Sbjct: 145 KVQPFLPAWLAKPSCVKKSVTEDLTPIEDIPEVHPDLQKQLRANGITSYFPVQAAVIPAL 204
Query: 63 ---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
IG G ++ DLC+++PTGSGKTL++ +P+VQ L +R V +RALVVLPT++
Sbjct: 205 LESADHGFLIGRGGYQPSDLCVSAPTGSGKTLAFVIPVVQALLHRVVCHIRALVVLPTKE 264
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA QV VF L V L GQ S+A E L+++ +
Sbjct: 265 LAQQVSKVFNIYTDTTPLRVALVTGQKSLAKEQESLVQK-------------TADGFRCL 311
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
DI+VATPGRL+DHI+ T GF+L+ L +L++DE DR++ +Q+WLP V+
Sbjct: 312 ADIVVATPGRLVDHIDQTPGFSLQQLRFLIIDEADRMIDSMHQSWLPRVVA--------- 362
Query: 233 FSDASTFLPSAFGSLKTIRRC---GVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH 289
A+ + GS ++R + P L K++ SATLTQDP KL +L L+
Sbjct: 363 ---AAFYSEGPTGSCALLQRTQPQALTAASTCVPQMPLQKLLFSATLTQDPEKLQRLGLY 419
Query: 290 HPLFLTT---------------GETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEK 334
P +T +Y P L + + C KPL ++ L+ + +
Sbjct: 420 QPRLFSTRLGQQSPKDTAEVDENSGKYTFPVGLTHHYVPCRLSSKPLIVLHLVLRMSCSR 479
Query: 335 CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394
+ FT+S E++HRL L FG + + E+S R K LK F +GKIQ+L+S+DA
Sbjct: 480 ALCFTNSRENSHRLYLLAQAFGG--VSVAEFSSRYGPGQRKKILKQFEQGKIQLLISTDA 537
Query: 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 454
RG+DV+GV V+NYD P Y++TY+HR GRTARAG+ G+ FTLL K + ++F +++ +A
Sbjct: 538 TARGIDVQGVELVINYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLKVQERKFLQMVSEA 597
Query: 455 DNDSCPIHSIPSSLIESLRPVYKSV 479
H IP L++ L Y++
Sbjct: 598 GVPELTHHEIPRKLLQPLVARYETA 622
>gi|40538825|ref|NP_081432.2| ATP-dependent RNA helicase DDX51 [Mus musculus]
gi|81892367|sp|Q6P9R1.1|DDX51_MOUSE RecName: Full=ATP-dependent RNA helicase DDX51; AltName: Full=DEAD
box protein 51
gi|38614333|gb|AAH60646.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 [Mus musculus]
Length = 639
Score = 297 bits (761), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 185/505 (36%), Positives = 273/505 (54%), Gaps = 59/505 (11%)
Query: 7 KSMPVLP-WMRSP--VDVSLFED-CPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQET 62
K P LP W+ P V S+ ED P++ +P + P L+ L+ GI+S FPVQ AV
Sbjct: 145 KVQPFLPAWLAKPSCVKKSVTEDLTPIEDIPEVHPDLQKQLRANGITSYFPVQAAVIPAL 204
Query: 63 ---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
IG G ++ DLC+++PTGSGKTL++ +P+VQ L +R V +RALVVLPT++
Sbjct: 205 LESADHGFLIGRGGYQPSDLCVSAPTGSGKTLAFVIPVVQALLHRVVCHIRALVVLPTKE 264
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA QV VF L V L GQ S+A E L+++ +
Sbjct: 265 LAQQVSKVFNIYTDTTPLRVALVTGQKSLAKEQESLVQK-------------TADGFRCL 311
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
DI+VATPGRL+DHI+ T GF+L+ L +L++DE DR++ +Q+WLP V+
Sbjct: 312 ADIVVATPGRLVDHIDQTPGFSLQQLRFLIIDEADRMIDSMHQSWLPRVVA--------- 362
Query: 233 FSDASTFLPSAFGSLKTIRRC---GVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH 289
A+ + GS ++R + P L K++ SATLTQDP KL +L L+
Sbjct: 363 ---AAFYSEGPTGSCALLQRTQPQALTAASTCVPQMPLQKLLFSATLTQDPEKLQRLGLY 419
Query: 290 HPLFLTT---------------GETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEK 334
P +T +Y P L + + C KPL ++ L+ + +
Sbjct: 420 QPRLFSTRLGQQSPKDTAEVDENSGKYTFPVGLTHHYVPCRLSSKPLIVLHLVLRMSCSR 479
Query: 335 CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394
+ FT+S E++HRL L FG + + E+S R K LK F +GKIQ+L+S+DA
Sbjct: 480 ALCFTNSRENSHRLYLLAQAFGG--VSVAEFSSRYGPGQRKKILKQFEQGKIQLLISTDA 537
Query: 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 454
RG+DV+GV V+NYD P Y++TY+HR GRTARAG+ G+ FTLL K + ++F +++ +A
Sbjct: 538 TARGIDVQGVELVINYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLKVQERKFLQMVSEA 597
Query: 455 DNDSCPIHSIPSSLIESLRPVYKSV 479
H IP L++ L Y++
Sbjct: 598 GVPELTHHEIPRKLLQPLVARYETA 622
>gi|417411466|gb|JAA52168.1| Putative atp-dependent rna helicase, partial [Desmodus rotundus]
Length = 535
Score = 296 bits (759), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 191/504 (37%), Positives = 272/504 (53%), Gaps = 57/504 (11%)
Query: 7 KSMPVLP-WMRSPVDV--SLFED-CPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQET 62
K P LP W+ P V ++ ED P++ + + P L+ L+ GISS FPVQ AV
Sbjct: 41 KVHPFLPKWLAEPSRVRKNVTEDRVPVEDVIEVHPDLQKKLRAHGISSYFPVQAAVIPAV 100
Query: 63 ---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
+G G ++ RDLC+++PTGSGKTL++ LP+VQ L RAV +RALVVLPT++
Sbjct: 101 LESAANGFLVGRGGYQPRDLCVSAPTGSGKTLAFVLPVVQALLWRAVCHVRALVVLPTKE 160
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA QV VF A L V L GQ S+A E L+++ +
Sbjct: 161 LAQQVSRVFNVYTDATPLRVALVTGQKSLAKEQETLVQK-------------TADGFRCL 207
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ--LTRSDNE 230
DI+VATPGRL+DHI+ T GF+L L +LV+DE DR++ +Q+WLP V+ R +
Sbjct: 208 ADIVVATPGRLVDHIDQTPGFSLRQLRFLVIDEADRMMDSMHQSWLPRVVAAAFPREGAQ 267
Query: 231 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 290
+ + P A + T P L K++ SATLTQ+P KL QL L+
Sbjct: 268 DPCALLQRRQPQAVTAASTC-----------SPQMPLQKLLFSATLTQNPEKLQQLGLYQ 316
Query: 291 PLFLTTGETR---------------YKLPERLESYKLICESKLKPLYLVALLQSLGEEKC 335
P +T R Y P L + + C + KPL ++ L+ L +
Sbjct: 317 PRLFSTQPARGGPGDADADVGSGAKYTFPSGLSHHYVPCSLQAKPLVILHLILHLSFSRV 376
Query: 336 IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 395
+ FT+S E+ HRL L+ FG + + E+S R LK F +GKIQ+L+S+DA
Sbjct: 377 LCFTNSRENAHRLFLLVQAFGG--VAVAEFSSRYGPGWRKMILKQFEQGKIQLLISTDAT 434
Query: 396 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 455
RG+DV GV VVNYD P Y++TY+HR GRTARAG+ G+ FTLL K + ++F ++L +A
Sbjct: 435 ARGIDVRGVQLVVNYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLKVQERKFLRMLTEAG 494
Query: 456 NDSCPIHSIPSSLIESLRPVYKSV 479
H P+ L++ L P Y++
Sbjct: 495 APELQRHDAPTELLQPLVPRYEAA 518
>gi|348688141|gb|EGZ27955.1| hypothetical protein PHYSODRAFT_258291 [Phytophthora sojae]
Length = 550
Score = 295 bits (756), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 187/475 (39%), Positives = 255/475 (53%), Gaps = 47/475 (9%)
Query: 35 LDPRLKVALQNMGISSLFPVQ-VAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQT 93
L P + +L + I S FPVQ VA+ + D+CI++PTGSGKTL+Y +PIVQ
Sbjct: 27 LAPEVSRSLAALSIRSFFPVQAVAIPKILASDSDRVTDICISAPTGSGKTLTYVVPIVQR 86
Query: 94 LSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPK 153
L R V +RAL+VLP+RDLA+QV + L GLA+GQS+ A E S L+
Sbjct: 87 LLPRVVCRVRALIVLPSRDLAVQVHQIVQQFVKGTPLKCGLAIGQSNFAVEQSALVGDVS 146
Query: 154 LEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA 213
E +S VDILVATPGRL+DH+ T GFTL+HL ++VDE DRLL ++
Sbjct: 147 GE-----KVSSTTDGGRSLVDILVATPGRLVDHLEQTPGFTLQHLQIMIVDEADRLLNQS 201
Query: 214 YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRC-GVERGFKDKPYPRLVKMVL 272
YQ W+P V + E D A G T RR + R P L +++L
Sbjct: 202 YQDWIPKVYASVFNGQE---VDEEGL---ALGVGVTCRRQDSINRRRIRTP---LTRVLL 252
Query: 273 SATLTQDPNKLAQLDLHHPLFLTTGET-------------------------------RY 301
SATLT++P KLA + + + G Y
Sbjct: 253 SATLTRNPRKLAAIGMSNAELTKIGRIDDPLADNAKQGTAGDSDDDDEDGEEASGSAKMY 312
Query: 302 KLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIK 361
P LE Y + C++ KPL L+ LL IVFT+SV STHRL LL + +
Sbjct: 313 STPTNLEEYWIECDTGSKPLVLLELLSEFAGALSIVFTASVNSTHRLARLLQLYSTHPER 372
Query: 362 IKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIH 421
I+E+S Q RS + F+ G+++ +V SDAM RGMD+E V NVVNYD P++IKTYIH
Sbjct: 373 IREFSSSLSQKQRSALVADFKAGRVETVVCSDAMARGMDIEDVANVVNYDVPSFIKTYIH 432
Query: 422 RAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVY 476
R GRTARAG+ GRC TL+ ++K ++L+KADN+ + + +++L P Y
Sbjct: 433 RVGRTARAGRHGRCVTLVKMGQMKGMMRMLKKADNNKLKPYPLQQEHMKTLVPRY 487
>gi|299750023|ref|XP_001836493.2| ATP-dependent RNA helicase [Coprinopsis cinerea okayama7#130]
gi|298408706|gb|EAU85306.2| ATP-dependent RNA helicase [Coprinopsis cinerea okayama7#130]
Length = 692
Score = 295 bits (756), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 185/496 (37%), Positives = 263/496 (53%), Gaps = 63/496 (12%)
Query: 43 LQNMGISSLFPVQVAVWQETI-----GPGLFE-----RDLCINSPTGSGKTLSYALPIVQ 92
L +GI+ LF VQ A+ + G GL+ DLC+++PTGSGKTL+Y LPIV+
Sbjct: 203 LAELGITELFAVQTAIVPHLLTGSSSGGGLYRPYDPPYDLCVSAPTGSGKTLAYVLPIVE 262
Query: 93 TLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
TL R V LRALVVLPTRDL QV++ F AI+ GL +G A GQ S A E S+L+
Sbjct: 263 TLQTRVVTRLRALVVLPTRDLVGQVRETFEAISKGTGLKIGSASGQHSFAHEQSQLV--- 319
Query: 153 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE 212
YD L S VDIL+ TPGRLMDH+ T F+L+HL YLV+DE DRLL +
Sbjct: 320 -------YDRTSHLAGGSSKVDILICTPGRLMDHLVGTPNFSLQHLRYLVIDEADRLLAQ 372
Query: 213 AYQAWLPTVLQLTRSDNENRFSDASTF--LPSAFG--SLKTIRRCGVERGFKDKPYPRLV 268
++Q WL VL R+ + F D++T +PS+ +++ I P P +
Sbjct: 373 SFQDWLAQVLAAIRTPKKGTFLDSTTVDNIPSSTSPYTIQPIPDGLAPNTLHQLPIPDIP 432
Query: 269 ------------KMVLSATLTQDPNKLAQLDLHHPLFLTTGE---------------TRY 301
K++ SATLT+DP K+A LDL P ++ ++
Sbjct: 433 TFLNEDRASSCQKLLFSATLTRDPGKIAALDLRDPRYIIVQSGKDQSVEENVTQVVLEKF 492
Query: 302 KLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGEL--- 358
+P+ L + ++ KPL + L+ S +VFT S EST RL L F E
Sbjct: 493 AVPDTLREHMIVVNPSKKPLIMFHLVYSHQVTNALVFTKSAESTTRLLRLFEFFEEARMA 552
Query: 359 --------RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 410
RI + YS S R L+ F+ KI +L+ SD ++RG+D+ VN+VV+Y
Sbjct: 553 AGGEDTSSRIVARAYSSDSPPSERKSILEDFKAQKIHILICSDLISRGIDISHVNHVVSY 612
Query: 411 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN-DSCPIHSIPSSLI 469
D P I+ Y+HR GRTARAG+ G +TL+ + E FKK++++AD+ DS + +
Sbjct: 613 DAPVDIRKYVHRVGRTARAGREGDAWTLVEEQEAHYFKKMMKEADHLDSVKRLRVAETAT 672
Query: 470 ESLRPVYKSVRGGISD 485
L P Y++ G + +
Sbjct: 673 APLEPFYEAALGKLKE 688
>gi|392564142|gb|EIW57320.1| DEAD-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 682
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 191/501 (38%), Positives = 271/501 (54%), Gaps = 63/501 (12%)
Query: 30 DHLPCLDPRLKVALQNMGISSLFPVQVAV---------WQETIGPGLFERDLCINSPTGS 80
D L +++ LQ +GI+ LF VQ AV Q P DLC+++PTGS
Sbjct: 182 DERTGLSGKMRKRLQELGIAELFAVQTAVVPLLLSSTRAQSLYRPYDPPEDLCVSAPTGS 241
Query: 81 GKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSS 140
GKTL+Y LPIV+ LS R V LRAL+VLPTRDL +QV++ F A+A GL +G A GQ S
Sbjct: 242 GKTLAYVLPIVEVLSARIVTRLRALIVLPTRDLVVQVRETFEAVAKGRGLKIGTATGQHS 301
Query: 141 IADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCY 200
A E S+L+ E G LQ S VD+L+ TPGRLMDHI T F+L+HL +
Sbjct: 302 FAHEQSQLVA----ERG------SDLQGGSSKVDVLICTPGRLMDHITGTPNFSLQHLRF 351
Query: 201 LVVDETDRLLREAYQAWLPTVLQLTRS--DNENRFSDAST------------FLPSAFGS 246
LV+DE DRLL +++Q WL VL +TR +++ S+AST L AF
Sbjct: 352 LVIDEADRLLAQSFQDWLAQVLAVTRPPRPSDDTRSEASTPPSHTTPRPHPDALAPAF-- 409
Query: 247 LKTIRRCGVER-GFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL---------TT 296
L +R R ++ P K++ SATLT+DP K+A L L P ++ T
Sbjct: 410 LHLLRGAPYTRTDIDERKEPSCQKLLFSATLTRDPAKIAALGLRAPRYIVVQGRKSAAAT 469
Query: 297 GE--------TRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRL 348
E ++ +P L + L+CES KPL L ++ + G +VFT S ES RL
Sbjct: 470 KEEGVLDFVMEKFTMPATLTEHMLVCESAAKPLMLFHMVHARGVTNALVFTKSAESATRL 529
Query: 349 CTLLNHF-GELR--------IKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 399
L F G LR + + YS R L+ FR +I +L+ SD ++RG+
Sbjct: 530 VRLFEFFEGALRAADASKKPVVARAYSSDLAPGERKAILEQFRNQEINILICSDLVSRGI 589
Query: 400 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN-DS 458
D+ V++VV+YD P + Y+HR GRTARAG+ G +TL+ + E + FK +L++AD+ +
Sbjct: 590 DISHVSHVVSYDVPVDFRKYVHRVGRTARAGREGDAWTLVEEQEARYFKGMLKEADHLEK 649
Query: 459 CPIHSIPSSLIESLRPVYKSV 479
+ S + SL+P Y++
Sbjct: 650 VKRLRVSDSDVASLKPAYETA 670
>gi|384494370|gb|EIE84861.1| hypothetical protein RO3G_09571 [Rhizopus delemar RA 99-880]
Length = 483
Score = 292 bits (748), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 185/456 (40%), Positives = 260/456 (57%), Gaps = 47/456 (10%)
Query: 7 KSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVW-----QE 61
K+M V W+ P VS + C LD + L P L +++G+SSLF VQ+AV +
Sbjct: 17 KNMGVPDWLLHPTVVSPKDTCELDQV-GLSPWLVQRCKDIGLSSLFAVQMAVIPVFLRHK 75
Query: 62 TIGPGL-FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV 120
T+ + DLCI++PTGSGKT++YALPIV LS R V+ LRA+VVLPTRDL +QVK+
Sbjct: 76 TLYDTIKVSGDLCISAPTGSGKTMAYALPIVDILSKRVVKRLRAVVVLPTRDLVVQVKET 135
Query: 121 FAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180
F A L V GQ S E L+ + E+ +S VDIL+ATP
Sbjct: 136 FDAFVKGTDLVVAAVSGQQSFTHEQHVLVG----------NEEESYPGGKSRVDILIATP 185
Query: 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTF- 239
GRL+DH+N+T FTL+H+ +LV+DE DRLL +++ WL +L T N +DA
Sbjct: 186 GRLIDHLNSTPNFTLQHVRFLVIDEADRLLNQSFNDWLNRILLAT---NPVVNADAPLLG 242
Query: 240 ---------LPSAFGSLKTIRRCGVERGFKDKPYPR---LVKMVLSATLTQDPNKLAQLD 287
LP A T + + D P+ + K++ SATLT++P K+A L
Sbjct: 243 FKTDKNGITLPDAIAP--TFLQSHYKLPVTDLDIPKAPFIQKLLFSATLTKNPAKIAGLH 300
Query: 288 LHHPLFLTT-------GETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTS 340
L+ P +++ + Y PE L+ Y +I ++ KPL ++ LL LG + + FT
Sbjct: 301 LNEPEYISVQHEDEDHAQREYTTPEGLKEYMIIVSTEKKPLTVIYLLHQLGVKSGLCFTK 360
Query: 341 SVESTHRLCTLLNHFGEL-----RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 395
SVEST RL TL+N + L RIK+KEYS R + R LK F++G+I +L+ SD +
Sbjct: 361 SVESTERLQTLINAYEALQPEEKRIKVKEYSSELRPTERKAVLKQFKDGEIDLLICSDLI 420
Query: 396 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ 431
RG+D++ V VV+YD PAY+ YIHR GRTARAG+
Sbjct: 421 GRGIDLDSVEYVVSYDAPAYMDKYIHRVGRTARAGR 456
>gi|395840150|ref|XP_003792928.1| PREDICTED: ATP-dependent RNA helicase DDX51 [Otolemur garnettii]
Length = 665
Score = 291 bits (745), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 183/498 (36%), Positives = 268/498 (53%), Gaps = 51/498 (10%)
Query: 7 KSMPVLP-WMRSP--VDVSLFED-CPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQET 62
K P LP W+ P + ++ E P++ +P + P L+ L+ GIS FPVQ AV
Sbjct: 173 KVQPFLPAWLAEPSCIQKNIAEGLVPIEDIPEVHPDLQKQLRAQGISFYFPVQAAVIPTL 232
Query: 63 ---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
+G G ++ DLC+++PTGSGKTL++ +P+VQ L R V +RALVVLPT++
Sbjct: 233 LESAANGFLVGRGGYQPSDLCVSAPTGSGKTLAFVIPVVQALLQRVVCHVRALVVLPTKE 292
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA QV VF L V L GQ ++A E L+++ +
Sbjct: 293 LAQQVSKVFNIYTDTTPLRVALITGQKTLAKEQESLVQK-------------TTDGYRCL 339
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
DI+VATPGRL+DHI+ T GF+L+ L +LV+DE DR++ +Q+WLP V+
Sbjct: 340 ADIVVATPGRLVDHIDQTPGFSLQQLRFLVIDEADRMIDSMHQSWLPRVVAAA------- 392
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
F P + ++ V P L K++ SATLTQ+P KL QL LHHP
Sbjct: 393 FQGEGPPDPCVLLQRRQLQ--AVTAASTCCPQMPLQKLLFSATLTQNPEKLQQLGLHHPR 450
Query: 293 FLTT-----------GET--RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFT 339
+T G+ +Y P L + + C KPL ++ L+ + + FT
Sbjct: 451 LFSTSLACKGPQDADGDVGGKYAFPVGLTHHYVPCSLSTKPLLVLHLILEKSFSRVLCFT 510
Query: 340 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 399
+S E++HRL L+ FG + + E+S R LK F +GKIQ+L+S+DA RG+
Sbjct: 511 NSRENSHRLFLLVQAFGG--VSVAEFSSRYGPGQRKMILKQFEQGKIQLLISTDATARGI 568
Query: 400 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSC 459
DV+GV V+NYD P Y++TY+HR GRTARAG G+ FTLL K + +RF ++L + +
Sbjct: 569 DVQGVELVINYDAPQYLRTYVHRVGRTARAGNAGQAFTLLLKVQERRFLRMLTEGGVPAL 628
Query: 460 PIHSIPSSLIESLRPVYK 477
H + S L++ L P Y+
Sbjct: 629 QRHELLSELLQPLVPRYE 646
>gi|393245833|gb|EJD53343.1| DEAD-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 522
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 189/482 (39%), Positives = 259/482 (53%), Gaps = 57/482 (11%)
Query: 29 LDHLPC--LDPRLKVALQNMGISSLFPVQVAVWQETIG--------PGLFERDLCINSPT 78
LD LP L R K L+++GI LF +Q A+ + P RD+C ++PT
Sbjct: 52 LDALPAGTLSERTKKRLKDLGIRELFAIQTALVPHLLAKPTRALYLPYSPPRDVCASAPT 111
Query: 79 GSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQ 138
GSGKTL+Y LP+ + L+ RAV LRAL+VLPTRDL QV++VF A+A GL VG G
Sbjct: 112 GSGKTLAYVLPLAELLAMRAVPRLRALIVLPTRDLVAQVREVFEAVAKGAGLRVGSVTGA 171
Query: 139 SSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHL 198
+S A E ++L+ + +S VD+LV TPGRL+DH++ T GFTL+HL
Sbjct: 172 ASFAHEKAQLVDK----------------RGESKVDVLVCTPGRLIDHLDGTEGFTLQHL 215
Query: 199 CYLVVDETDRLLREAYQAWLPTVLQL-----TRSDNENRFSDASTFLPSAFGSLKTIRRC 253
+LV+DE DRLL +++Q WL VL T S A +FLP F S + R
Sbjct: 216 RFLVIDEADRLLTQSFQDWLARVLSAITPPSTPSSTLPSRPVAPSFLPHPFASAGSNLRP 275
Query: 254 GVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG--------ETRYKLPE 305
F+ P P KM+LSATLT+DP +LA L LHHP + E +PE
Sbjct: 276 ----DFEPPPRPSCQKMLLSATLTRDPGRLAALGLHHPQYFVVSSSGGAAAPEEFGAVPE 331
Query: 306 RLESYKLICESKLKPLYLV------ALLQSLGEEK--CIVFTSSVESTHRLCTLLNH-FG 356
L+ + + KPL L LL + GEEK +VF SVE+ RL LL
Sbjct: 332 GLDERFCVIDPAEKPLVLAWILREHVLLAAGGEEKKQVLVFCKSVEAATRLGVLLAAMLA 391
Query: 357 ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYI 416
++ + YS +S+ L+ FR G + VLV SD ++RG+DV V V+NYD P
Sbjct: 392 DVGKSVASYSSDAPRSL----LERFRTGAVDVLVCSDLVSRGLDVPSVAAVLNYDAPVDA 447
Query: 417 KTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD-NDSCPIHSIPSSLIESLRPV 475
+ Y+HR GRTARAG+ G +T++ E + FK+LL A D + ++E LRP
Sbjct: 448 RKYVHRVGRTARAGRRGDAWTMVEGQEARHFKELLAAAGRTDRVKKVRVAEKVLEPLRPA 507
Query: 476 YK 477
Y+
Sbjct: 508 YE 509
>gi|301117032|ref|XP_002906244.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262107593|gb|EEY65645.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 564
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 191/509 (37%), Positives = 268/509 (52%), Gaps = 47/509 (9%)
Query: 35 LDPRLKVALQNMGISSLFPVQ-VAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQT 93
L P + L + I S FPVQ VA+ + D+CI++PTGSGKTL+Y +PIVQ
Sbjct: 29 LAPEVCATLTKLNIRSFFPVQAVAIPKILASDSDRVTDICISAPTGSGKTLTYVVPIVQR 88
Query: 94 LSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPK 153
L R V +RAL+VLP+RDLA+QV + L GLA+GQS+ A E + L+
Sbjct: 89 LLPRVVCRVRALIVLPSRDLAVQVHQIVQQFVQGTPLKCGLAIGQSNFAAEQNALVGATS 148
Query: 154 LEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA 213
I +S VDILVATPGRL+DH+ T GFTL+HL ++VDE DRLL ++
Sbjct: 149 GNKVIATTDGG-----RSLVDILVATPGRLVDHLEQTPGFTLQHLQIMIVDEADRLLNQS 203
Query: 214 YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRC-GVERGFKDKPYPRLVKMVL 272
YQ W+ V + E D T G T RR + R P L +++L
Sbjct: 204 YQDWISKVYASVFNGQEVD-EDGLTL-----GVGVTCRRQDSINRRRIRTP---LTRVLL 254
Query: 273 SATLTQDPNKLAQLDLHH-----------PL-------------------FLTTGETR-Y 301
SATLT++P KLA + + + PL TG + Y
Sbjct: 255 SATLTRNPRKLAAIGMSNAELTKIGRIDDPLADNAKLGNAGDSDDEDEDGDEATGSKKMY 314
Query: 302 KLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIK 361
P L+ Y + C++ KPL L+ LL IVFT+SV STHRL LL + +
Sbjct: 315 STPTNLDEYWIECDTGSKPLVLLELLSEFAGSLSIVFTASVNSTHRLARLLQLYSTHPER 374
Query: 362 IKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIH 421
I+E+S Q RS + + G+++ +V SDAM RGMD+E V NVVNYD P++IKTYIH
Sbjct: 375 IREFSSSLSQKQRSSLVADCKAGRVETVVCSDAMARGMDIEDVANVVNYDVPSFIKTYIH 434
Query: 422 RAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSVRG 481
R GRTARAG+ GRC TL+ ++K ++L+KADN+ +++ +++L P Y
Sbjct: 435 RVGRTARAGRHGRCVTLVKLGQMKSMMRMLKKADNNKLKPYALQQEHMKTLVPRYTEALQ 494
Query: 482 GISDEAFWKVGCDLHGVNRVRRSFYQTSG 510
+ D + L + +R++ SG
Sbjct: 495 QLKDTLEAEKAGKLQATSILRKNKMSVSG 523
>gi|388582635|gb|EIM22939.1| P-loop containing nucleoside triphosphate hydrolase protein
[Wallemia sebi CBS 633.66]
Length = 675
Score = 288 bits (737), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 189/520 (36%), Positives = 265/520 (50%), Gaps = 74/520 (14%)
Query: 2 EEAKKKSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQE 61
EE KK +P + PVD + H + RLK L ++G SLF VQ+A
Sbjct: 165 EELKKLGLPDVFANEIPVDANQTFPSAQSHTLGIGQRLKSRLTDVGFESLFAVQLAAIPL 224
Query: 62 TIG-----------PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110
IG P RD+C+++PTGSGKTL Y LPIV+ +S R V LRALVVLPT
Sbjct: 225 LIGDLKENIRHPLYPSESPRDICVSAPTGSGKTLGYTLPIVEIISRRLVTRLRALVVLPT 284
Query: 111 RDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP-KLEAGICYDPEDVLQEL 169
RDL QVK+ F A L VG GQ S E ++L+ + + AG C
Sbjct: 285 RDLVSQVKETFEIFAKGTDLKVGTITGQQSFQQEQAKLVDQTDSVLAGGC---------- 334
Query: 170 QSAVDILVATPGRLMDHINATRGFTLEHLCYL---------------VVDETDRLLREAY 214
S VDIL+ATPGRL+DHIN+T FTL+HL +L V+DE DRLL +++
Sbjct: 335 -SKVDILIATPGRLIDHINSTPNFTLQHLRFLVGILTYIFMELIYAKVIDEADRLLNQSF 393
Query: 215 QAWL---------PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYP 265
Q+W+ P Q R ++ S + ++T R +RG +
Sbjct: 394 QSWIDRIQVALTTPIQTQPKRDTHDALGYPNSMLIDEKHDLIETFERP--QRGVQ----- 446
Query: 266 RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR---YKLPERLESYKLICESKLKPLY 322
KM+ SATLT DP+K+ L L+ P F+ + Y +P LE ++ E+ KPL
Sbjct: 447 ---KMLFSATLTTDPSKIRSLHLNEPKFVIVRNNKVEDYAIPTTLEERMIVSETAYKPLM 503
Query: 323 LVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGEL---RIKIKEYSGLQRQSVRSKTLK 379
L+ LL G + + FT SVES RL LL F E + +S R K L
Sbjct: 504 LLHLLHQRGVRRALCFTKSVESATRLMHLLRLFKEEVGNGPTVASFSSDLSPQERQKMLT 563
Query: 380 AFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439
FR+G++ +L+S+D + RG+D++G+ NV+NYD P + Y+HR GRTARAG +G+ +TL+
Sbjct: 564 KFRDGEVDMLISTDVIARGIDIQGIENVINYDIPLDMPKYVHRVGRTARAGLVGKAWTLV 623
Query: 440 HKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSV 479
E K FK + A ++ ++ RP+ K V
Sbjct: 624 EVQEAKYFKTYTKNAKHE-----------VKKARPMTKEV 652
>gi|409048731|gb|EKM58209.1| hypothetical protein PHACADRAFT_171465 [Phanerochaete carnosa
HHB-10118-sp]
Length = 681
Score = 288 bits (736), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 175/469 (37%), Positives = 252/469 (53%), Gaps = 57/469 (12%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFER--------DLCINSPTGSGKTLSY 86
L + K LQ +GI+ LF VQ AV + R D+C+++PTGSGKTL+Y
Sbjct: 189 LSEKTKKRLQELGITELFAVQTAVIPFLMSDQKQRRLYLHDPPHDICVSAPTGSGKTLAY 248
Query: 87 ALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEIS 146
LPIV+ LS+R + LRAL+VLPTRDL QV++ F A+A L +G A GQ S A E S
Sbjct: 249 VLPIVELLSSRVITRLRALIVLPTRDLVTQVRETFEALAKGRSLKIGTATGQHSFAHEQS 308
Query: 147 ELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDET 206
+L+ L LQ S +DIL+ TPGRL+DH+N T F+L+HL +LV+DE
Sbjct: 309 QLVADRTLR----------LQGGSSKIDILICTPGRLIDHLNGTPNFSLQHLRFLVIDEA 358
Query: 207 DRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCG------------ 254
D+LL +++Q WL VL TR D + + S+ S+ T
Sbjct: 359 DKLLAQSFQDWLARVLSATRPSEIPTSPDLVSGVASSTDSIPTPDGLAPAFLHIFHGIPH 418
Query: 255 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP-LFLTTGETR------------- 300
V F + K++ SATLT+DP+K+A L+L P F+ G +R
Sbjct: 419 VRTDFDEPKETSCQKLLFSATLTRDPSKIAALNLRDPKYFVVQGSSREIATQQEGVLDLV 478
Query: 301 ---YKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 357
+ +P L + ++CES KPL L L+ + G + +VFT S EST RL L F
Sbjct: 479 MEKFNMPATLLEHMIVCESSQKPLVLFHLVHTHGVKNALVFTKSAESTARLVKLFEFFEL 538
Query: 358 LRIKIKE----------YSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV 407
RI E YS S R + L F+ + +LV SD ++RG+D+ V++V
Sbjct: 539 SRISSTEQQGSAIVLSAYSSDLAPSARKEILDKFKNQETHILVCSDLISRGIDISHVSHV 598
Query: 408 VNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 456
V+YD P ++ Y+HR GRTARAG+ G +TL+ + E + FK +L++A++
Sbjct: 599 VSYDAPVDMRKYVHRVGRTARAGRTGDAWTLIEEQEARHFKNMLKEANH 647
>gi|213511024|ref|NP_001133236.1| ATP-dependent RNA helicase DDX51 [Salmo salar]
gi|209147204|gb|ACI32879.1| ATP-dependent RNA helicase DDX51 [Salmo salar]
Length = 678
Score = 285 bits (729), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 184/499 (36%), Positives = 271/499 (54%), Gaps = 54/499 (10%)
Query: 6 KKSMPVLP-WMRSP--VDVSLFED-CPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQ- 60
+K VLP W+ P + + + P+ +P + +L+ L++ GI LFPVQ V
Sbjct: 188 QKVQRVLPKWLAEPDVIQRDITSNLVPISDVPGICTKLQRKLESNGIHHLFPVQAEVIPA 247
Query: 61 --ETIGPGLF-------ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111
E++ GL RD+C+++PTGSGKTL++ +P++Q L R V +R L VLPT+
Sbjct: 248 ILESVSHGLLIGRGGYKPRDVCVSAPTGSGKTLAFVIPVIQALIGRVVCKVRVLAVLPTK 307
Query: 112 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 171
+LA QV VF++ A L V + GQ S A E + L + GI + S
Sbjct: 308 ELAQQVCKVFSSYAEGNSLKVVMLAGQKSFAAEQALLSEN---RGGISH----------S 354
Query: 172 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN 231
DI+VATPGRL+DHIN GF+LEHL +L++DE DR++ +Q+WL V +
Sbjct: 355 LADIVVATPGRLVDHINKNDGFSLEHLRFLIIDEADRMIDSMHQSWLSQVTKAVY--RPR 412
Query: 232 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 291
R S+A + K + P L K++ SATLTQ+P KL QL LH P
Sbjct: 413 RVSEAVSIF-------KRTEPAPITAASLSPPQMPLQKLLFSATLTQNPEKLQQLGLHQP 465
Query: 292 LFLTT----------GETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 341
++ + R+ P+ L Y + C KPL ++ + L + FT+S
Sbjct: 466 RLFSSVHSQSTTNPESQERFNFPQGLTEYYVPCTLSKKPLLILHFILRLKFSPILCFTNS 525
Query: 342 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 401
E+THRL L+ FG ++ E+S + R +TLK F +GKIQ+L+S+DA RG+D+
Sbjct: 526 REATHRLFLLVQLFGG--VQAAEFSSRLSPNERMRTLKEFEQGKIQLLISTDAAARGIDI 583
Query: 402 EGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPI 461
GV VVNYD P +I+TYIHR GRTARAG+ G FT L + K+F ++++ D S I
Sbjct: 584 NGVKCVVNYDAPQFIRTYIHRVGRTARAGKSGLAFTFLLGVQEKKFLQMVK--DAGSPGI 641
Query: 462 HS---IPSSLIESLRPVYK 477
H +P +L +S+ P Y+
Sbjct: 642 HKQIVMPGNL-KSMEPRYE 659
>gi|336383556|gb|EGO24705.1| hypothetical protein SERLADRAFT_369949 [Serpula lacrymans var.
lacrymans S7.9]
Length = 651
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 177/464 (38%), Positives = 251/464 (54%), Gaps = 56/464 (12%)
Query: 38 RLKVALQNMGISSLFPVQVAVW-----QETIGPGLFE-----RDLCINSPTGSGKTLSYA 87
+++ L+ +GI+ LF VQ + ++ GL+ RD+C+++PTGSGKTL+Y
Sbjct: 179 KMRRRLKELGITELFAVQTRLLPFLLPRDARKRGLYAPYAPPRDVCVSAPTGSGKTLAYV 238
Query: 88 LPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISE 147
LPIV+TLS+R + LRALVVLPTRDL +QV++ F + GL VG A GQ S A E S+
Sbjct: 239 LPIVETLSSRIITRLRALVVLPTRDLVMQVRETFEEVGKGRGLKVGTATGQHSFAHEQSQ 298
Query: 148 LIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 207
LI D L S +DIL+ TPGRL+DH+N T F+L+HL +LV+DE D
Sbjct: 299 LIA----------DRSSGLLGGSSKIDILICTPGRLVDHMNGTPNFSLQHLRFLVIDEAD 348
Query: 208 RLLREAYQAWLPTVLQLT-----------RSDNENRFSDASTFLPSAFGSLKTIRRCGVE 256
RLL +++Q W+ V+ T R++ E F A P + I
Sbjct: 349 RLLAQSFQDWVARVVTATRPTTFPSSGTPRAEEEETFGCADGLAPPLLHAKYAIANT--- 405
Query: 257 RGFKD-KPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET--------------RY 301
G+ D KP K++ SATL +DP KLA L L + + RY
Sbjct: 406 YGYMDEKPSSSCQKLLFSATLPRDPGKLAGLQLRDVKYFVVQKARGGREEGVLDVVMERY 465
Query: 302 KLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHF------ 355
+P L + ++C S KPL L L+Q +VFT S EST RL L F
Sbjct: 466 TMPATLREHMIVCASSEKPLVLFDLVQRHKVRNGLVFTKSAESTARLVRLFELFEKAVAG 525
Query: 356 -GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA 414
G L + K YS R L+ F+ +IQ+LV SD ++RGMD+ V++VV+YD P
Sbjct: 526 EGRLGVVAKAYSSDLSVGERRGILEKFKAEEIQILVCSDLISRGMDMSHVSHVVSYDVPV 585
Query: 415 YIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDS 458
++ Y+HR GRTARAG+ G +TL+ + E + FK++L +AD+ S
Sbjct: 586 DMRKYVHRVGRTARAGREGDAWTLVEEQEARYFKRMLSEADHIS 629
>gi|390348197|ref|XP_797208.3| PREDICTED: uncharacterized protein LOC592601 [Strongylocentrotus
purpuratus]
Length = 997
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 185/478 (38%), Positives = 255/478 (53%), Gaps = 68/478 (14%)
Query: 14 WMRSP--VDVSLFEDC-PLDHLPCLDPRLKVALQNMGISSLFPVQ---VAVWQETIGPGL 67
W+ P + SL D P++ + LD RL AL MG+ FPVQ + V E++ G+
Sbjct: 314 WLARPSVIQQSLTNDLQPVNSIKGLDERLVTALAYMGVEKFFPVQQHVIPVLLESLRDGI 373
Query: 68 FE-------RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV 120
RDLCI++PTGSGKTL+YA+PI+Q L NR V +RALVVLPTRDLA QV +
Sbjct: 374 HTGHAGYRPRDLCISAPTGSGKTLAYAIPIIQALMNRVVCRVRALVVLPTRDLATQVYKI 433
Query: 121 FAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180
+A+ A L L G A E S L++ ++ EL S DI+VATP
Sbjct: 434 ISALCKATPLKPVLIGGTKKFAQEQSLLVR-------------EIDGELHSLADIVVATP 480
Query: 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFL 240
GRL+D+I+ T GF L+HL +LV+DE DRL+ Q W+ V + + D T L
Sbjct: 481 GRLVDNISQTAGFNLQHLRFLVIDEADRLMEHISQDWIAQVEKSAYTP----LYDNGTTL 536
Query: 241 PSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET- 299
P+ + + + R + P L K++ SATL+Q+P KL QL L P +TT +
Sbjct: 537 PTFTSNRQRPGPLTINRSSSFQ-LP-LQKLLFSATLSQNPEKLTQLRLFQPRLITTATSS 594
Query: 300 ---------------------------------RYKLPERLESYKLICESKLKPLYLVAL 326
+Y P L Y + C + KPL L
Sbjct: 595 RAPPISAWHLDGEKEGVKEEGKEKDEGRTDFVGKYTTPVGLSEYFVQCTAGEKPLVLQHF 654
Query: 327 LQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 386
L +L ++ + FT+SV++THRL LL G+ +++ E+S QS R LK F+ GKI
Sbjct: 655 LLNLYFKQVLCFTNSVQTTHRLYLLLKLMGD--VEVSEFSSNLSQSERQNILKQFKAGKI 712
Query: 387 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444
Q+LV SDAM RGMD+E V V++YD P ++KTYIHR GRTARAG+ G F+ + K E
Sbjct: 713 QILVCSDAMARGMDIENVRCVISYDLPPHLKTYIHRVGRTARAGRGGTAFSFIRKKEA 770
>gi|343426780|emb|CBQ70308.1| related to DBP6-ATP-dependent RNA helicase [Sporisorium reilianum
SRZ2]
Length = 852
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 173/462 (37%), Positives = 254/462 (54%), Gaps = 58/462 (12%)
Query: 43 LQNMGISSLFPVQVAVW---------QETIGPGLFERDLCINSPTGSGKTLSYALPIVQT 93
L+ +G+S F VQV+V + P RDLC+++PTGSGKTL+Y++PIV+
Sbjct: 342 LEALGVSEWFAVQVSVIPCLLAQPQSRSLYRPFAPPRDLCVSAPTGSGKTLAYSVPIVEV 401
Query: 94 LSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPK 153
L R + LRAL+VLPTRDL QV+ +A GL +G A GQ S A E ++L+
Sbjct: 402 LRTRQIVRLRALIVLPTRDLVSQVRSTLELLAKGSGLRIGTATGQHSFAHEQNQLVG--- 458
Query: 154 LEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA 213
+ D ED +L+S VDILVATPGRL+DH+++T GFTL HL +LV+DE DRLL ++
Sbjct: 459 -TSSSDEDEEDA--QLESKVDILVATPGRLIDHLDSTPGFTLAHLRFLVIDEADRLLNQS 515
Query: 214 YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGV----ERGFKDKPYPRLVK 269
+Q WL VL T + S A L T G+ + +++ P + K
Sbjct: 516 FQEWLRRVLAATEGTANSDVHSQSRGSAQAPYELLTSSASGLGAATQSTLQEEAVPSVQK 575
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGET------------------RYKLPERLESYK 311
++ SATLT+DP K+A L L +P ++T +T R+ LP L +
Sbjct: 576 LLFSATLTRDPAKIAALGLRNPHYITVQDTHSAGDDENGRVNGAQQHERFSLPHSLREHM 635
Query: 312 LICESKLKPLYLVALLQSLGEE---------KCIVFTSSVESTHRLCTLLNHFGELR--- 359
L+ S KP +L+ LL ++ K + FT SV+S RL L+ F ++R
Sbjct: 636 LVTTSADKPFHLLYLLHRPDQDVDNNDSRIRKALCFTKSVDSAARLVKLIEIFEQVRSEN 695
Query: 360 ---------IKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 410
+ +K YS + S R + L AF +G+I +LV SD ++RG+D+ V +VV+Y
Sbjct: 696 GLVSRGSRPLVVKNYSSELKPSDRQRILAAFAQGEIDLLVCSDLISRGIDLPSVEHVVSY 755
Query: 411 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 452
D P Y+HR GRTARAG+ G +TL+ + E + FKK+++
Sbjct: 756 DAPIDPAKYVHRVGRTARAGKHGDAWTLVEEQEARHFKKMIR 797
>gi|58264962|ref|XP_569637.1| ATP-dependent RNA helicase [Cryptococcus neoformans var. neoformans
JEC21]
gi|134109595|ref|XP_776912.1| hypothetical protein CNBC4030 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50259592|gb|EAL22265.1| hypothetical protein CNBC4030 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57225869|gb|AAW42330.1| ATP-dependent RNA helicase, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 701
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 174/445 (39%), Positives = 248/445 (55%), Gaps = 46/445 (10%)
Query: 43 LQNMGISSLFPVQVAVWQETIGPGLFERDLC------INSPTGSGKTLSYALPIVQTLSN 96
L +GI F VQ A+ + L C I++PTGSGKTL+Y +PI++ LS
Sbjct: 233 LNEIGIEDFFAVQAAMLPRLLPLQLIPSPYCPLPDYLISAPTGSGKTLAYTIPILEILSQ 292
Query: 97 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 156
R + LRAL+VLPTRDL QV++ A++ GL++G GQ S A E +L+
Sbjct: 293 RTICRLRALIVLPTRDLVFQVRETMEALSKGTGLTIGTVTGQHSFAQERKQLVA------ 346
Query: 157 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 216
D + L S +DIL+ATPGRLMDH+ +T FTL+HL +LV+DE DRLL +++Q
Sbjct: 347 ----DLDTPLLGGSSKLDILIATPGRLMDHLASTPNFTLQHLRFLVIDEADRLLNQSFQD 402
Query: 217 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKT--IRRCGV--ERGFKDKPYPRLV-KMV 271
WL VL TR E A +F + ++ + + CG+ +RG P + K++
Sbjct: 403 WLTQVLAYTRPPVE---PIAPSFKRKPYDTVSSAFMEACGLVDKRGEWCDSSPSICQKLL 459
Query: 272 LSATLTQDPNKLAQLDLHHPLFL-----------TTGETRYKLPERLESYKLICESKLKP 320
SATLT+DP+K+A L LHHP + T+ ++ LP L LI LKP
Sbjct: 460 FSATLTRDPSKVAALSLHHPQYYIVQSSSVPALPTSVGEQFALPSSLSEKMLILPPALKP 519
Query: 321 LYLVALLQ--SLGEEKCIVFTSSVESTHRLCTLLNHF---------GELRIKIKEYSGLQ 369
L L+ L+ ++ +VFT SVES RL LL F G R+ +++YSG
Sbjct: 520 LNLIHLIHHSEFNVDRALVFTKSVESAARLVKLLEFFEDAYVLGGGGGKRLVVEQYSGET 579
Query: 370 RQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA 429
R + + L F EGK+ ++V SD + RG+D+ V++VV+YD P I+ Y+HR GRTARA
Sbjct: 580 RAKDKKQLLAEFGEGKVNLIVCSDLIARGIDLPSVSHVVSYDIPLDIRKYVHRVGRTARA 639
Query: 430 GQLGRCFTLLHKDEVKRFKKLLQKA 454
G+ G +TL+ K E FK +LQ A
Sbjct: 640 GRQGTAWTLVEKQEALHFKGMLQNA 664
>gi|402224982|gb|EJU05044.1| DEAD-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 540
Score = 282 bits (721), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 180/473 (38%), Positives = 261/473 (55%), Gaps = 75/473 (15%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETI-GP----GLFE-----RDLCINSPTGSGKTL 84
L+ RL+ L+ +G+ +LF VQ A+W + GP GL+E RD+C+++PTGSGKTL
Sbjct: 57 LNERLQRRLEALGVDNLFAVQAALWPWLLTGPEARRGLYEPRRAPRDVCVSAPTGSGKTL 116
Query: 85 SYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADE 144
+YA+PIV+ LS R V LR+LV+LPTRDL QVK+ F A+ GL VG A G S A E
Sbjct: 117 AYAVPIVEILSVRVVTRLRSLVILPTRDLVQQVKETFEALCKGTGLKVGSATGAQSWAKE 176
Query: 145 ISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVD 204
L++ D E LQ S +DILV TPGRL+DH++ T F+L+HL +LV+D
Sbjct: 177 QKALVE----------DLETKLQGGSSNIDILVCTPGRLIDHLDDTPNFSLQHLRFLVID 226
Query: 205 ETDRLLREAYQAWLPTVLQ-LTRSDN----------ENRFSDASTFLPSAFGSLKTIRRC 253
E DRLL +++Q++LP +L LT + + + S A LP FG + C
Sbjct: 227 EADRLLSQSFQSFLPRLLTALTPTPHPVPPSSDLLIPDALSPAWLDLPHEFGWAPMLPSC 286
Query: 254 GVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP-LFLTT----GE-------TRY 301
K++ SAT+T+DP L L L +P F+ T GE +
Sbjct: 287 Q--------------KLLFSATMTRDPGVLKSLGLRNPKYFIVTAAPEGERDEAIIREEF 332
Query: 302 KLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHF------ 355
+P+ L Y L+ + LKPLYL LL + +VFT S EST RL L F
Sbjct: 333 SVPDTLSEYLLVVPTDLKPLYLFHLLHTHPITNALVFTKSTESTTRLLKLFEFFESARLS 392
Query: 356 ------------GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG 403
G +I + +S + R L F++G+I+VLV+SD ++RG+D+
Sbjct: 393 VSTSVSASAQDGGSPQILARAFSSELGKGERKSILDQFKQGRIRVLVASDLVSRGIDIPD 452
Query: 404 VNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 456
V++VVNYD P ++ Y+HRAGRTARAG+ G ++L+ E + +++L+ A +
Sbjct: 453 VSHVVNYDSPLDMRKYVHRAGRTARAGREGEVWSLVESQEARWVREMLKAAGH 505
>gi|443730193|gb|ELU15819.1| hypothetical protein CAPTEDRAFT_183322 [Capitella teleta]
Length = 576
Score = 281 bits (720), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 180/492 (36%), Positives = 247/492 (50%), Gaps = 53/492 (10%)
Query: 5 KKKSMPVLP-WMRSPVDVS---LFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQ 60
++K VLP W+ +S E CPL LD RL L+ G+ FPVQ +
Sbjct: 86 QEKVSRVLPDWLTKTTSISSDIKSERCPLAETADLDERLITLLEKNGVKDFFPVQARLIP 145
Query: 61 ETIGP------------GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108
T+ G DLC ++ TGSGKTL+Y +PIVQ LS R V +RALVVL
Sbjct: 146 ATMNSFDKQFPYALTKGGFRPSDLCCSAATGSGKTLAYVVPIVQALSRRVVPAIRALVVL 205
Query: 109 PTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQE 168
P RDLA QV VF L V L G S +E ++ P
Sbjct: 206 PVRDLAQQVYKVFCTYCAGTNLKVVLTAGYKSFENEQQQMTFGP--------------NG 251
Query: 169 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSD 228
+ DI++ TPGRL+DH+ T+GF L L +LV+DE DRL++E W VL++ +
Sbjct: 252 TKCPADIVITTPGRLVDHLIETKGFCLNELRFLVIDEADRLMKEFKFDW---VLKVENAV 308
Query: 229 NENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDL 288
+ + + T G + C G+ D P+ L K++ SATL+Q+P L Q+ L
Sbjct: 309 YHHTYDTSVTS-----GHRFSPNLCSAA-GYDDYPHVGLQKLLFSATLSQNPEVLQQMRL 362
Query: 289 HHPLFLTTGE-----------TRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIV 337
P T E +Y P L + CE KPL L L+ + + +
Sbjct: 363 FQPRLFTASEGTDESSQMESINKYVTPASLNEMFIKCEENTKPLVLFHLIHTRKYRQVLC 422
Query: 338 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTR 397
FT+SV+STHRLCTLL G ++ ++E S + R KTLK F GKI+++V SD M R
Sbjct: 423 FTNSVKSTHRLCTLLRLMG--KVSVEELSSHISINKRQKTLKKFAAGKIEIVVCSDQMAR 480
Query: 398 GMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADND 457
GMD+E V++YD P +I+ Y+HR GRTAR G G TLL +VK FK++L KA
Sbjct: 481 GMDIENAKCVISYDVPNFIQNYVHRVGRTARGGHAGSAITLLDHSQVKFFKEMLHKAGKS 540
Query: 458 SCPIHSI-PSSL 468
++ PS L
Sbjct: 541 DFKTETVKPSEL 552
>gi|348537210|ref|XP_003456088.1| PREDICTED: ATP-dependent RNA helicase DDX51-like [Oreochromis
niloticus]
Length = 621
Score = 281 bits (720), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 179/478 (37%), Positives = 248/478 (51%), Gaps = 50/478 (10%)
Query: 32 LPCLDPRLKVALQNMGISSLFPVQVAVWQET---------IGPGLFE-RDLCINSPTGSG 81
+P L +L L + GI FPVQ V IG G ++ RD+C+++PTGSG
Sbjct: 162 VPGLCAQLLKNLHSNGIQHFFPVQAEVIPAILESAQQGLLIGRGGYKPRDICVSAPTGSG 221
Query: 82 KTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSI 141
KTLS+ +PI+Q L +R V +RAL VLPT++LA QV VFA+ A L V + GQ S
Sbjct: 222 KTLSFVIPIIQVLMDRVVCEVRALAVLPTKELAQQVHRVFASYAEGTSLKVVMLAGQKSF 281
Query: 142 ADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYL 201
A E + L E +S DI+VATPGRL+DH+ G LEHL +L
Sbjct: 282 AAEQASL-------------SEHRWNMRRSLADIVVATPGRLIDHMTKNSGLCLEHLRFL 328
Query: 202 VVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKD 261
V+DE DR++ +Q+WL V+ +R S F +T C +
Sbjct: 329 VIDEADRMIDSMHQSWLSQVMGAV---YRSRAEPGSVFR-------RTEAAC-ITSASLS 377
Query: 262 KPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL--------------TTGETRYKLPERL 307
P L K++ SATLTQ+P KL QL LH P T G R+ P+ L
Sbjct: 378 PPQTPLQKLLFSATLTQNPEKLQQLGLHQPRLFSSAHGQADSTAASPTHGHDRFNFPQGL 437
Query: 308 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 367
Y + C KPL L+ + + + FT+S E+ HRL LL FG ++ E+S
Sbjct: 438 TEYYVPCTMSSKPLLLLHFILRMKLHPILCFTNSRETAHRLHLLLQLFGG--VQAAEFSS 495
Query: 368 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 427
R KTLK F +GKIQ+L+S+DA+ RG+D+ GV VVNYD P YI+TYIHR GRTA
Sbjct: 496 QLSPGDRKKTLKEFEQGKIQLLISTDAVARGIDISGVKCVVNYDAPQYIRTYIHRVGRTA 555
Query: 428 RAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSVRGGISD 485
RAG+ G FT L + + K F +++ KA + + + S+ Y+ ++D
Sbjct: 556 RAGKTGLAFTFLLRVQEKNFLQMVVKAGSPGIQKQVVKPENLRSMEGQYEKALQKLAD 613
>gi|392594884|gb|EIW84208.1| P-loop containing nucleoside triphosphate hydrolase protein
[Coniophora puteana RWD-64-598 SS2]
Length = 620
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 174/452 (38%), Positives = 247/452 (54%), Gaps = 52/452 (11%)
Query: 43 LQNMGISSLFPVQVAVWQ----ETIG------PGLFERDLCINSPTGSGKTLSYALPIVQ 92
L ++GI+ LF VQ A+ ET P RD+C+++PTGSGKTL+Y LPIV+
Sbjct: 149 LGDLGITELFAVQTALLPFLLPETHSQRALYVPYEPLRDVCVSAPTGSGKTLAYVLPIVE 208
Query: 93 TLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
LS R V LRAL+VLPTRDL QV++ F ++ GL G A GQ S + E S+L+
Sbjct: 209 ILSTRIVTRLRALIVLPTRDLVTQVRETFEVVSKGRGLKTGTATGQHSFSHEQSQLVA-- 266
Query: 153 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE 212
D L+ S VDIL+ TPGRL+DHIN T F+L+HL +LV+DE DRLL +
Sbjct: 267 --------DSSTSLRGGSSKVDILICTPGRLIDHINGTPNFSLQHLRFLVIDEADRLLAQ 318
Query: 213 AYQAWLPTVLQLTRSDNENRFSDASTF------LPSAFGSLKTIRRCGVERGFKDKPYPR 266
++Q WL VL T + A TF LP+ G T + ++
Sbjct: 319 SFQDWLAQVLAATLPPDHA--GAAYTFPTDRYGLPTPDGLAPTFVHH-FQTDIDEEKESS 375
Query: 267 LVKMVLSATLTQDPNKLAQLDLHHPLFLT------------TGETRYKLPERLESYKLIC 314
K++ SATLT+DP KLA L L P + GE ++ +P L+ + +IC
Sbjct: 376 CQKLLFSATLTRDPGKLAALKLRDPKYFVVQAKEKLDGNDYVGE-QFTMPATLKEHMIIC 434
Query: 315 ESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGEL----------RIKIKE 364
E KPL L LLQ+ + ++FT S EST RL L HF ++ I+
Sbjct: 435 EPSQKPLMLFYLLQNRSVDNALIFTKSSESTSRLVRLFEHFATFKQSGAASEDDKLVIQA 494
Query: 365 YSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAG 424
YS R + L+ F+ ++ +LV SD ++RG+D+ V +VV+YD P ++ Y+HR G
Sbjct: 495 YSSDLPAGERKRILEKFKAKEVHLLVCSDLVSRGIDISHVAHVVSYDAPVDMRKYVHRVG 554
Query: 425 RTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 456
RTARAG+ G +TL+ + E + FK +L+ AD+
Sbjct: 555 RTARAGREGHAWTLVEEQEARYFKTMLKTADH 586
>gi|405123262|gb|AFR98027.1| ATP-dependent RNA helicase [Cryptococcus neoformans var. grubii
H99]
Length = 718
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 174/446 (39%), Positives = 248/446 (55%), Gaps = 48/446 (10%)
Query: 43 LQNMGISSLFPVQVAVWQETIGPGLFER------DLCINSPTGSGKTLSYALPIVQTLSN 96
L +G+ F VQ A+ + L D I++PTGSGKTL+Y +PI++ LS
Sbjct: 250 LNEIGVEDFFAVQAAMLPRLLPLQLIPSPYSPLPDYLISAPTGSGKTLAYTIPIIEILSQ 309
Query: 97 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 156
R V LRAL++LPTRDL QV++ A++ GL++G GQ S A E +L+
Sbjct: 310 RTVCRLRALIILPTRDLVFQVRETMEALSKGTGLTIGTVTGQHSFAQERKQLVA------ 363
Query: 157 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 216
D + L S +DIL+ATPGRLMDH+ +T FTL+HL +LV+DE DRLL +++Q
Sbjct: 364 ----DLDTPLLGGSSKLDILIATPGRLMDHLASTPNFTLQHLRFLVIDEADRLLNQSFQD 419
Query: 217 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKT--IRRCGVERGFKD--KPYPRLV-KMV 271
WL VL TR E A +F + ++ + + CG+ ++ P + K++
Sbjct: 420 WLTQVLAYTRPPVE---PIAPSFKRKPYDTVSSAFMEACGLVNKSEEWCDSSPSICQKLL 476
Query: 272 LSATLTQDPNKLAQLDLHHPLFL------------TTGETRYKLPERLESYKLICESKLK 319
SATLT+DP+K+A L LHHP + + GE ++ LP L LI LK
Sbjct: 477 FSATLTRDPSKVAALSLHHPQYYIVQSSSAPALPTSVGE-QFALPSSLSEKMLILPPALK 535
Query: 320 PLYLVALLQ--SLGEEKCIVFTSSVESTHRLCTLLNHF---------GELRIKIKEYSGL 368
PL L+ L+ ++ +VFT SVES RL LL F G R+ I++YSG
Sbjct: 536 PLNLIHLIHHPEFNVDRALVFTKSVESAARLVKLLEFFEDAYVLGGGGGKRLVIEQYSGE 595
Query: 369 QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 428
R + + L F EGKI ++V SD + RG+D+ V++VV+YD P I+ Y+HR GRTAR
Sbjct: 596 MRARDKKQLLAEFGEGKINLIVCSDLIARGIDLPSVSHVVSYDIPLDIRKYVHRVGRTAR 655
Query: 429 AGQLGRCFTLLHKDEVKRFKKLLQKA 454
AG+ G +TL+ K E FK +LQ A
Sbjct: 656 AGRQGTAWTLVEKQEALHFKGMLQNA 681
>gi|219122463|ref|XP_002181564.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217406840|gb|EEC46778.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 453
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 176/449 (39%), Positives = 252/449 (56%), Gaps = 47/449 (10%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPG----LFERDLCINSPTGSGKTLSYALPIVQ 92
P L L+ G ++ FP+Q + I + RD+CI +PTGSGKTL+Y LP++
Sbjct: 17 PFLTNNLKRDGFANFFPIQALAIPDVIASERHAYIQARDVCITAPTGSGKTLAYVLPVLN 76
Query: 93 TLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
+L+NR +R LRALVVLP+RDLA QV VF + L VGLA+GQS E ++
Sbjct: 77 SLANRKIRRLRALVVLPSRDLANQVFKVFKSFMEGSDLKVGLAIGQSDFVAEQMAILALQ 136
Query: 153 KLEAGICYD-PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 211
E G +D PE ++ QS +D+LV TPGRL+DH++ T GF+LEHL +L+VDE DRLL
Sbjct: 137 AFEDGNDHDLPEK--RDPQSTIDVLVCTPGRLVDHLDNTPGFSLEHLRFLIVDEADRLLS 194
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
+ Y W+ V+Q S D + F + S +++ +P +L K +
Sbjct: 195 QTYHNWIGRVIQSANSGRGGVVGDDTDF--NTNDSYRSVASSVC------RPV-QLRKFL 245
Query: 272 LSATLTQDPNKLAQL--------DLH-----HPLFLTTGETRYKLPERLESYKLICESKL 318
+SATLT+DP KLA L D+H H F T +Y +PE L + + C ++
Sbjct: 246 VSATLTRDPQKLASLKLVNPKHFDVHQLRTGHQGFFNTNTKKYSMPEGLHEHTVECTAEQ 305
Query: 319 KPLYLVALL---------QSLGEEKCIVFTSSVESTHRLCTLLN------HFGELRIKIK 363
KP+ L+AL+ QS ++ IVFT+S++STHRL LL +GE +
Sbjct: 306 KPIVLLALVLDQLTPQQSQSSSKQSVIVFTASLDSTHRLARLLQLLWVSAGYGEPD-SVV 364
Query: 364 EYSGLQRQSVRSKTLKAFR--EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIH 421
E+S Q RS +K + K+ V+V SD M+RGMD++ V V+NYD P KTY+H
Sbjct: 365 EFSSALNQHERSALMKRCNDPQDKVSVVVCSDGMSRGMDIDAVRAVINYDVPGLAKTYVH 424
Query: 422 RAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
R GRTARAG+ G +LL + ++F K+
Sbjct: 425 RCGRTARAGKEGHAISLLKGGQTRQFDKM 453
>gi|443895519|dbj|GAC72865.1| protein kinase [Pseudozyma antarctica T-34]
Length = 860
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 174/463 (37%), Positives = 257/463 (55%), Gaps = 63/463 (13%)
Query: 43 LQNMGISSLFPVQVAVW---------QETIGPGLFERDLCINSPTGSGKTLSYALPIVQT 93
L+ +G+S F VQV+V + P RDLC+++PTGSGKTL+Y +PIV+
Sbjct: 353 LEALGVSEWFAVQVSVIPCLLAQPQSRSLYRPFAPPRDLCVSAPTGSGKTLAYTVPIVEV 412
Query: 94 LSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPK 153
L R + LRAL+VLPTRDL QV+ +A GL + A G S A E ++L++
Sbjct: 413 LRTRQIVRLRALIVLPTRDLVSQVRSTLELVAKGSGLRIATATGHHSFAHEQTQLVE--- 469
Query: 154 LEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA 213
G+ D +D + QS VDIL+ATPGRL+DH+++T GFTL HL +LV+DE DRLL ++
Sbjct: 470 ---GLDADDDDDSVQKQSKVDILIATPGRLIDHLDSTPGFTLAHLRFLVIDEADRLLNQS 526
Query: 214 YQAWLPTVLQLTR--SDNENRFSDAS------TFLPSAFGSLKTIRRCGVERGFKDKPYP 265
+Q WL VL T ++ ++R ++A+ L SA R ++ ++ P
Sbjct: 527 FQEWLRRVLSATEGVANADSRCTEATPAQAPYELLSSASSGFGAAARSTLQ----EEAVP 582
Query: 266 RLVKMVLSATLTQDPNKLAQLDLHHPLFLTT--------GET---------RYKLPERLE 308
+ K++ SATLT+DP K+A L L +P ++T GE+ R+ LP L
Sbjct: 583 SVQKLLFSATLTRDPAKIAALGLRNPHYITVQDDNPAADGESGLAERAQHERFSLPHSLH 642
Query: 309 SYKLICESKLKPLYLVALLQSLGEE-------KCIVFTSSVESTHRLCTLLNHFGELR-- 359
+ L+ S KP +L+ LL +E K + FT SVES RL L+ F E+R
Sbjct: 643 EHMLVTTSADKPFHLLYLLHRPDDEQAAAKIRKALCFTKSVESAARLVKLVEMFEEVRQE 702
Query: 360 ----------IKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN 409
+ +K YS R S R + L F G+I +LV SD ++RG+D+ V +V++
Sbjct: 703 SGLIARGARPMVVKNYSSELRPSDRQRILAQFGNGEIDLLVCSDLISRGIDLPSVEHVIS 762
Query: 410 YDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 452
YD P Y+HR GRTARAG+ G +TL+ + E + FKK+++
Sbjct: 763 YDAPVDSAKYVHRVGRTARAGKHGDAWTLVEEQEARHFKKMVR 805
>gi|321253768|ref|XP_003192843.1| ATP-dependent RNA helicase [Cryptococcus gattii WM276]
gi|317459312|gb|ADV21056.1| ATP-dependent RNA helicase, putative [Cryptococcus gattii WM276]
Length = 702
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 177/454 (38%), Positives = 248/454 (54%), Gaps = 64/454 (14%)
Query: 43 LQNMGISSLFPVQVAVWQETIGPGLFER------DLCINSPTGSGKTLSYALPIVQTLSN 96
L+++G+ F VQ A+ + L D I++PTGSGKTL+YA+PI++ LS
Sbjct: 234 LKDIGVEDFFAVQAAMLPRLLPLQLIPSPYSSLPDYLISAPTGSGKTLAYAIPIIEILSQ 293
Query: 97 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 156
R V LRAL+VLPTRDL QV++ A++ GL++G GQ S A E +L+
Sbjct: 294 RTVCRLRALIVLPTRDLVFQVRETMEALSKGTGLTIGTVTGQHSFAQERKQLVA------ 347
Query: 157 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 216
D E L S +DIL+ATPGRLMDH+ +T FTL+HL +LV+DE DRLL +++Q
Sbjct: 348 ----DLETPLLGGSSKLDILIATPGRLMDHLASTPNFTLQHLRFLVIDEADRLLNQSFQN 403
Query: 217 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGF--------KDKPY---- 264
WL VL TR E +P +F K V F KD +
Sbjct: 404 WLTQVLAYTRPPIEP--------IPPSF---KRKPHDTVSSAFMEACSLIDKDGEWCDSS 452
Query: 265 PRLV-KMVLSATLTQDPNKLAQLDLHHPLFL------------TTGETRYKLPERLESYK 311
P + K++ SATLT+DP+K+A L LHHP + + GE ++ LP L
Sbjct: 453 PSICQKLLFSATLTRDPSKIAALSLHHPQYYIVQSSIAPALPTSVGE-QFALPSSLSEKM 511
Query: 312 LICESKLKPLYLVALLQ--SLGEEKCIVFTSSVESTHRLCTLLNHF---------GELRI 360
LI LKPL L+ L+ ++ +VFT SVES RL LL F G R+
Sbjct: 512 LIVPPALKPLNLIHLVHHSEFNVDRALVFTKSVESAARLVKLLEFFEDAYVLGGGGGKRL 571
Query: 361 KIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYI 420
+++YSG + + + L F EGK+ ++V SD + RG+D+ V++VV+YD P I+ Y+
Sbjct: 572 AVEQYSGEMKARDKKQLLAEFGEGKVNLIVCSDLIARGIDLPSVSHVVSYDIPLDIRKYV 631
Query: 421 HRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 454
HR GRTARAG+ G +TL+ K E FK +LQ A
Sbjct: 632 HRVGRTARAGRQGTAWTLVEKQEALHFKGMLQNA 665
>gi|71004804|ref|XP_757068.1| hypothetical protein UM00921.1 [Ustilago maydis 521]
gi|46096872|gb|EAK82105.1| hypothetical protein UM00921.1 [Ustilago maydis 521]
Length = 870
Score = 278 bits (711), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 171/464 (36%), Positives = 254/464 (54%), Gaps = 59/464 (12%)
Query: 43 LQNMGISSLFPVQVAVW---------QETIGPGLFERDLCINSPTGSGKTLSYALPIVQT 93
L+ +GIS F VQV+V + P RDLC+++PTGSGKTL+Y++PIV+
Sbjct: 358 LEALGISEWFAVQVSVIPCLLAQPQSRSLYRPFAPPRDLCVSAPTGSGKTLAYSVPIVEV 417
Query: 94 LSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPK 153
L R + LRAL+VLPTRDL QV+ +A GL +G A GQ S A E ++L+
Sbjct: 418 LRTRQIVRLRALIVLPTRDLVSQVRSTLELVAKGSGLRIGTATGQHSFAHEQNQLVGS-- 475
Query: 154 LEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA 213
+ + D ++ E + +DIL+ATPGRL+DH+++T GF L HL +LVVDE DRLL ++
Sbjct: 476 -SSAVDQDQDEAQSEPK--IDILIATPGRLIDHLDSTPGFNLAHLRFLVVDEADRLLNQS 532
Query: 214 YQAWLPTVLQLT--RSDNENRFSDASTFLPSA-----FGSLKTIRRCGVERGFKDKPYPR 266
+Q WL VL T ++D R + P+ F S + +++ P
Sbjct: 533 FQEWLRRVLAATNGKTDQAERERASQKSGPAQAPFELFSSSASGLGAAATSTLQEEAAPS 592
Query: 267 LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET------------------RYKLPERLE 308
+ K++ SATLT+DP K+A L L +P ++T +T ++ LP L
Sbjct: 593 VQKLLFSATLTRDPAKIAALGLRNPHYITVQDTNSAGDEDQGRANGVQQHEQFSLPHSLH 652
Query: 309 SYKLICESKLKPLYLVALLQ-------SLGE-EKCIVFTSSVESTHRLCTLLNHFGELRI 360
+ L+ S KP +L+ LL LG K + FT SV+S RL LL F E+R+
Sbjct: 653 EHMLVTTSADKPFHLLYLLHRPDDVNNELGRIRKALCFTKSVDSAARLVKLLEIFEEVRV 712
Query: 361 K------------IKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVV 408
+ +K YS + S R + L AF +G+I +LV SD ++RG+D+ V +V+
Sbjct: 713 ENSLIARGSRALVVKNYSSELKPSDRQRILSAFEKGEIDLLVCSDLISRGIDLPSVEHVI 772
Query: 409 NYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 452
+YD P Y+HR GRTARAG+ G +TL+ + E + FKK ++
Sbjct: 773 SYDAPIDPAKYVHRVGRTARAGKHGDAWTLVEEQEARHFKKTVR 816
>gi|410914978|ref|XP_003970964.1| PREDICTED: ATP-dependent RNA helicase DDX51-like [Takifugu
rubripes]
Length = 596
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 177/496 (35%), Positives = 257/496 (51%), Gaps = 55/496 (11%)
Query: 11 VLP-WMRSPVDVSLFED-----CPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQET-- 62
VLP W+ P DV + +D P+ + L P+ L + GI FPVQ V
Sbjct: 111 VLPQWLAQP-DV-IHKDIKGHLVPVCKIAGLAPKFINKLHHNGIDHFFPVQAEVIPAVLE 168
Query: 63 -------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114
IGPG ++ RD+C+++PTGSGKTL++ +P++Q L R + +RAL VLPT++LA
Sbjct: 169 SAQQGLLIGPGGYKPRDICVSAPTGSGKTLAFVIPVIQVLMQRVICEVRALAVLPTKELA 228
Query: 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVD 174
QV VF+ A L V + GQ S A E + L E +S D
Sbjct: 229 QQVFKVFSTYAEGTPLRVLMLAGQKSFAAEQASL-------------SEYRGSRRRSLAD 275
Query: 175 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 234
I+VATPGRL+DHI+ G LE L +L++DE DR++ +QAWL V++ T S
Sbjct: 276 IIVATPGRLVDHIHKKSGLNLEQLRFLIIDEADRMIDSMHQAWLSQVVKATYSSGSE--- 332
Query: 235 DASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL 294
P A+ + P L K++ SATLTQ+P KL QLDLH P
Sbjct: 333 ------PEAWSIFSRSEPACITAASLSPPRMPLQKLLFSATLTQNPEKLQQLDLHQPRLF 386
Query: 295 TTGETR-------------YKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 341
++ + + P+ L + + C KPL ++ + L + FT+S
Sbjct: 387 SSNHCQADGTVAAAQKADCFDFPQGLTEFYVPCTLSRKPLLILHFVLRLKLSPILCFTNS 446
Query: 342 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 401
E+ HRL L+ FG ++ E+S + R +TLK F++GKIQ+L+S+DA RG+DV
Sbjct: 447 REAAHRLYLLVQLFGG--VQAAEFSSRLSPAERKQTLKDFQQGKIQLLISTDATARGIDV 504
Query: 402 EGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPI 461
GV VVNYD P Y++TYIHR GRTARAG+ G FT L + K+F K++ A +
Sbjct: 505 SGVKCVVNYDAPQYVRTYIHRVGRTARAGKSGLAFTFLLGVQEKKFLKMVMDAGSPGIQK 564
Query: 462 HSIPSSLIESLRPVYK 477
+ S ++ + Y+
Sbjct: 565 QIVKSESLKGMEGRYE 580
>gi|388851453|emb|CCF54855.1| related to DBP6-ATP-dependent RNA helicase [Ustilago hordei]
Length = 869
Score = 276 bits (707), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 169/462 (36%), Positives = 251/462 (54%), Gaps = 56/462 (12%)
Query: 43 LQNMGISSLFPVQVAVW---------QETIGPGLFERDLCINSPTGSGKTLSYALPIVQT 93
L+ +G+S F VQ++V + P RDLC+++PTGSGKTL+Y +PIV+
Sbjct: 355 LEALGVSEWFAVQISVIPCLLAQPQSRSLYRPFAPPRDLCVSAPTGSGKTLAYTVPIVEV 414
Query: 94 LSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPK 153
L R + LRAL+VLPTRDL QV+ +A GL +G A GQ S A E S+L+
Sbjct: 415 LRTRQIVRLRALIVLPTRDLVSQVRSTLELVAKGSGLRIGTATGQHSFAHEQSQLVW--S 472
Query: 154 LEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA 213
L G Y+ ++ L+E S VD+L+ATPGRL+DH+++T GFTL HL +LV+DE DRLL ++
Sbjct: 473 LSVGDDYEEQNALKE--SKVDVLIATPGRLIDHLDSTPGFTLAHLRFLVIDEADRLLNQS 530
Query: 214 YQAWLPTVLQLTRSDNENRF----SDASTFLPSAFGSLKTIRRCGVE-RGFKDKPYPRLV 268
+Q WL VL T + +A+ P S G +++ P +
Sbjct: 531 FQEWLRRVLAATEGKGTDAVPQWKGEAAAQAPHELLSGNASGLGGAAWSTLQEEAVPSVQ 590
Query: 269 KMVLSATLTQDPNKLAQLDLHHPLFLTTGET------------------RYKLPERLESY 310
K++ SATLT DP K+A L L +P ++T ++ R+ LP L +
Sbjct: 591 KLLFSATLTSDPAKIAALGLRNPHYITVQDSHSAGDEEDGRSNGSQQHERFSLPHSLHEH 650
Query: 311 KLICESKLKPLYLVALLQSLGE--------EKCIVFTSSVESTHRLCTLLNHFGELRIK- 361
L+ S KP +L+ LL + K + FT SV+S RL L+ F ++R +
Sbjct: 651 MLVTTSADKPFHLLYLLHRPDDVEQNSSRIRKALCFTKSVDSAARLVKLIEIFEQVRSES 710
Query: 362 -----------IKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 410
+K YS + S R + L F +G+I +LV SD ++RG+D+ V +VV+Y
Sbjct: 711 GLIQRGSRPFVVKNYSSELKPSERQRILTQFGQGEIDLLVCSDLISRGIDLPTVEHVVSY 770
Query: 411 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 452
D P Y+HR GRTARAG+ G +TL+ + E + FKK+++
Sbjct: 771 DAPIDPAKYVHRVGRTARAGKHGDAWTLVEEQEARHFKKMVR 812
>gi|393221493|gb|EJD06978.1| DEAD-domain-containing protein [Fomitiporia mediterranea MF3/22]
Length = 496
Score = 275 bits (703), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 174/460 (37%), Positives = 241/460 (52%), Gaps = 58/460 (12%)
Query: 43 LQNMGISSLFPVQVAVW-----QETIGPGLF-----ERDLCINSPTGSGKTLSYALPIVQ 92
L ++GI+ F VQ A+ + L+ +D+C ++PTGSGKTL+Y +PIV+
Sbjct: 5 LLDLGINEFFAVQTALLPFLLPSKRCSRALYLPYDPPQDVCASAPTGSGKTLAYVIPIVE 64
Query: 93 TLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
LS R LRALVVLPTRDL LQV++VF A+ GL +G+A GQ S A E +L+
Sbjct: 65 ILSARIATKLRALVVLPTRDLVLQVQEVFEAVGKGRGLKIGVATGQHSFAHEQGQLVP-- 122
Query: 153 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE 212
D + Q S VDIL+ TPGRLMDH+N T GFTL+HL +LV+DE DRLL +
Sbjct: 123 --------DQDKGSQGGASKVDILICTPGRLMDHLNGTPGFTLQHLRFLVIDEADRLLAQ 174
Query: 213 AYQAWLPTVLQLTR------SDNENRFS----DASTFLPSAFGSLKTIRRCGVERGFKDK 262
++Q WL VL R SD + S AS+ L S+ + D
Sbjct: 175 SFQDWLAQVLSALRPPTQSISDGVSSLSLNKPGASSILGFGHDSIAPAFLPHIPTDLDDP 234
Query: 263 PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT----------------GETRYKLPER 306
+ K++ SATLT+DP ++A L L P + G + +P
Sbjct: 235 KHSSCQKLLFSATLTRDPARIAALGLRDPKYFVVQATTSIDRDTSGPAALGMENFAMPPS 294
Query: 307 LESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG---------- 356
L+ + + + KPL L LL + G +VFT S EST RL LL +F
Sbjct: 295 LKEHYITTPTARKPLILFHLLHNRGISNALVFTKSAESTARLVKLLEYFEVAYLALSDTV 354
Query: 357 --ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA 414
RI + YS R L+ F++ +I +LV SD + RG+D+ V +VV+YD P
Sbjct: 355 NPPKRIVAQAYSSDLPSGERKNVLEKFKKQEIDILVCSDLVARGLDISHVAHVVSYDAPV 414
Query: 415 YIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 454
I+ Y+HRAGRTARAG+ G +TL+ E K FK +L+ A
Sbjct: 415 DIRKYVHRAGRTARAGRAGDAWTLVEDQEAKFFKDMLRDA 454
>gi|301604620|ref|XP_002931939.1| PREDICTED: ATP-dependent RNA helicase DDX51 [Xenopus (Silurana)
tropicalis]
Length = 660
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 186/484 (38%), Positives = 259/484 (53%), Gaps = 64/484 (13%)
Query: 6 KKSMPVLP-WMRSP--VDVSLFED-CPLDHLPCLDPRLKVALQNMGISSLFPVQV----A 57
+K +PVLP W+ P V ++ ++ P+ + CL P++ L+ + LFPVQ A
Sbjct: 164 EKVLPVLPQWLAQPSLVQKNIKQNLVPIHDIHCLHPKVLKKLEANKVKYLFPVQAEVIPA 223
Query: 58 VWQET-----IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111
+ T +G G + D+C+++PTGSGKTL++ +PIVQ L R V +RALVVLPT+
Sbjct: 224 ILDSTCHGFLLGKGGYRPSDVCVSAPTGSGKTLAFVIPIVQALLQRVVCEVRALVVLPTK 283
Query: 112 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 171
+LA QV VF +GL V + GQ S E LI + G C S
Sbjct: 284 ELAQQVCKVFNTYVDGMGLKVVMVTGQKSFLKEQESLIHKTAF--GFC-----------S 330
Query: 172 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP----TVLQLTRS 227
DILV TPGRL+DHI T GF L HL +LV+DE DR++ Q WL V Q+ +
Sbjct: 331 LADILVCTPGRLVDHIQQTEGFNLRHLRFLVIDEADRMIDSMNQDWLSHVTKAVFQVV-A 389
Query: 228 DNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLD 287
D+ N F G L C P L K++ SATLTQ+P KL QL
Sbjct: 390 DSPNML-----FTRKEPGILTAASSC--------LPQTPLQKLLFSATLTQNPEKLKQLG 436
Query: 288 LHHPLFLTT---------GETR--------YKLPERLESYKLICESKLKPLYLVALLQSL 330
L+ P T+ ET+ + LPE L Y + C KPL L+ L SL
Sbjct: 437 LYQPRLFTSKQKGTSDDSSETQMESSTSGNFSLPEGLTHYYIPCNLNSKPLILLHFLLSL 496
Query: 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 390
+ + FT+S +++HRL L+ FG I + E+S R KTLK F +GK+Q+L+
Sbjct: 497 RFSRVLCFTNSRDASHRLYLLVRSFG--GISVAEFSSRLSPGERKKTLKEFEQGKVQLLI 554
Query: 391 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
S+DA RG+D++GV V+NYD P +I+TY+HR GRTARAG+ G FT+L K + + +
Sbjct: 555 STDATARGIDIKGVKCVINYDAPQFIRTYVHRVGRTARAGKAGLAFTMLLKVQENPYFSM 614
Query: 451 LQKA 454
L+ A
Sbjct: 615 LRDA 618
>gi|432947382|ref|XP_004084018.1| PREDICTED: ATP-dependent RNA helicase DDX51-like [Oryzias latipes]
Length = 632
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 174/473 (36%), Positives = 252/473 (53%), Gaps = 59/473 (12%)
Query: 11 VLP-WMRSPVDVSLFEDCPLDHLP-CLD----PRLKVALQNMGISSLFPVQVAVWQETI- 63
VLP W+ P ++ D + LP C++ P+L+ LQ+ G+ FPVQ V +
Sbjct: 141 VLPQWLAQPD--AICRDIKNNLLPVCVESPLCPQLQKKLQDNGVHHFFPVQAEVIPAILD 198
Query: 64 --------GPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114
G G F RD+C+++PTGSGKTL++ LP++Q L R V +RAL VLPT++LA
Sbjct: 199 AAQHGSLLGRGGFRPRDICVSAPTGSGKTLAFVLPVIQVLMTRMVCEVRALAVLPTKELA 258
Query: 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVD 174
QV VF A L V + GQ S A E + L ++ G+ +S D
Sbjct: 259 QQVYKVFGTYAEGTPLRVLMLAGQKSFAAEQASL---SEIRGGV----------RRSTAD 305
Query: 175 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 234
I+VATPGRL+DHIN G L+ L +L++DE DR++ +Q+WL V TR+
Sbjct: 306 IIVATPGRLVDHINKNSGLCLQQLRFLIIDEADRMIDSMHQSWLSLV---TRA------- 355
Query: 235 DASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL 294
+ P L + P L K++ SATLTQ+P KL QL LH P
Sbjct: 356 ---VYGPETTKLLGRTEPACITAASLSPPQMPLQKLLFSATLTQNPEKLQQLGLHQPRLF 412
Query: 295 TTGET-------------RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 341
++ + R+ P+ L Y + C KPL ++ + + + FT+S
Sbjct: 413 SSAHSNDPPADATALKPERFDFPQGLTEYYVPCTLSKKPLLILHFILRMKLHPILCFTNS 472
Query: 342 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 401
E+ HRL L+ FG ++ E+S + R +TLK F +GKIQ+L+S+DA RG+D+
Sbjct: 473 RETAHRLYLLVQLFGG--VQAAEFSSRLSPNERKRTLKEFDQGKIQLLISTDAAARGIDI 530
Query: 402 EGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 454
GV VVNYD P +I+ YIHR GRTARAG+ G FT L + + KRF +++Q+A
Sbjct: 531 PGVKCVVNYDAPQFIRMYIHRVGRTARAGKSGLAFTFLLRVQEKRFLQMVQEA 583
>gi|91092858|ref|XP_969365.1| PREDICTED: similar to ATP-dependent RNA helicase DDX51 [Tribolium
castaneum]
gi|270003080|gb|EEZ99527.1| hypothetical protein TcasGA2_TC000109 [Tribolium castaneum]
Length = 601
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 176/473 (37%), Positives = 253/473 (53%), Gaps = 58/473 (12%)
Query: 5 KKKSMPVLP-WMRSPVDVS--LFE-DCPLDHLPCLDPRLKVALQNMGISSLFPVQVAV-- 58
K K+ VLP W+ +P +S L E C + L LD L+ L+ G+ LFPVQ V
Sbjct: 103 KPKADRVLPQWLANPTVISSDLQELTCKVSKLKELDKGLREQLKANGVKYLFPVQAEVIP 162
Query: 59 W---QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115
W +F RD+C+++PTGSGKTL++ LP+VQTL VR +RALV+LPT+DLA
Sbjct: 163 WVLQSRQNADIMFPRDVCVSAPTGSGKTLAFVLPVVQTLKQFTVRKIRALVILPTQDLAE 222
Query: 116 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDI 175
QV F + VGL G+ E +L+ C+ S +DI
Sbjct: 223 QVFKSFKLYTQGTRIEVGLVSGKQMFQAEQKQLV-----YFNECFG-------FVSKIDI 270
Query: 176 LVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSD 235
LV T GRL++H+ +T GF L+ L +L++DE DR+L WL L+ +NR
Sbjct: 271 LVCTAGRLVNHLKSTNGFNLQALEFLIIDEADRVLESVQDDWL-YHLEKHIYTIQNR--- 326
Query: 236 ASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLT 295
K + C ++R + P+ K++ SATLTQDP K+ +L L P T
Sbjct: 327 ------------KVLNVCTLQR----QRAPQ--KLLFSATLTQDPEKIEKLSLFQPKLFT 368
Query: 296 TGET---------------RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTS 340
+ +Y P+ L ++C +KPL L A L+ K +VFT
Sbjct: 369 SSVVENSNESEEKPMILTGKYTTPKELTEKYIVCSKDVKPLVLYAFLKRENLTKTLVFTH 428
Query: 341 SVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMD 400
SVES HRL LL + R+KI+E S + R + + +F +G++ +L+ +D + RG+D
Sbjct: 429 SVESAHRLKILLKSLFKKRLKIEEISSNLKGKSRDEFISSFTKGEVDLLICTDFLARGID 488
Query: 401 VEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQK 453
+ GVN V++Y P Y+KTYIHRAGRTARAG+ G TLLH+++V FK LL+K
Sbjct: 489 LPGVNCVISYSAPKYLKTYIHRAGRTARAGESGLAVTLLHEEQVPAFKTLLKK 541
>gi|336370797|gb|EGN99137.1| hypothetical protein SERLA73DRAFT_54272 [Serpula lacrymans var.
lacrymans S7.3]
Length = 514
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 171/458 (37%), Positives = 240/458 (52%), Gaps = 62/458 (13%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVW-----QETIGPGLFE-----RDLCINSPTGSGKTL 84
L +++ L+ +GI+ LF VQ + ++ GL+ RD+C+++PTGSGKTL
Sbjct: 69 LSVKMRRRLKELGITELFAVQTRLLPFLLPRDARKRGLYAPYAPPRDVCVSAPTGSGKTL 128
Query: 85 SYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADE 144
+Y LPIV+TLS+R + LRALVVLPTRDL +QV++ F + GL VG A GQ S A E
Sbjct: 129 AYVLPIVETLSSRIITRLRALVVLPTRDLVMQVRETFEEVGKGRGLKVGTATGQHSFAHE 188
Query: 145 ISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVD 204
S+LI +DIL+ TPGRL+DH+N T F+L+HL +LV+D
Sbjct: 189 QSQLIA----------------DRSSGKIDILICTPGRLVDHMNGTPNFSLQHLRFLVID 232
Query: 205 ETDRLLREAYQAWLPTVLQLT-----------RSDNENRFSDASTFLPSAFGSLKTIRRC 253
E DRLL +++Q W+ V+ T R++ E F A P + I
Sbjct: 233 EADRLLAQSFQDWVARVVTATRPTTFPSSGTPRAEEEETFGCADGLAPPLLHAKYAIANT 292
Query: 254 GVERGFKD-KPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET------------- 299
G+ D KP K++ SATL +DP KLA L L + +
Sbjct: 293 ---YGYMDEKPSSSCQKLLFSATLPRDPGKLAGLQLRDVKYFVVQKARGGREEGVLDVVM 349
Query: 300 -RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHF--- 355
RY +P L + ++C S KPL L L+Q +VFT S EST RL L F
Sbjct: 350 ERYTMPATLREHMIVCASSEKPLVLFDLVQRHKVRNGLVFTKSAESTARLVRLFELFEKA 409
Query: 356 ----GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD 411
G L + K YS R L+ F+ +IQ+LV SD ++RGMD+ V++VV+YD
Sbjct: 410 VAGEGRLGVVAKAYSSDLSVGERRGILEKFKAEEIQILVCSDLISRGMDMSHVSHVVSYD 469
Query: 412 KPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKK 449
P ++ Y+HR GRTARAG+ G +TL+ + EV K
Sbjct: 470 VPVDMRKYVHRVGRTARAGREGDAWTLVEEQEVSAVTK 507
>gi|358055147|dbj|GAA98916.1| hypothetical protein E5Q_05604 [Mixia osmundae IAM 14324]
Length = 2128
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 168/460 (36%), Positives = 239/460 (51%), Gaps = 46/460 (10%)
Query: 31 HLPCLDPRLKVALQNMGISSLFPVQVAVWQETIG--------PGLFERDLCINSPTGSGK 82
+ P L P L + LQ G+ +LF VQ+A Q +G P RDLC+N+PTGSGK
Sbjct: 306 NAPLLSPTLLIRLQEQGLETLFAVQMATCQHILGTEQTRSLYPRYPPRDLCVNAPTGSGK 365
Query: 83 TLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIA 142
TL+Y LPIVQ LS V +RAL++LPTRDL QVKD F L +G A G S
Sbjct: 366 TLAYVLPIVQMLSTTIVTRMRALIILPTRDLVTQVKDTFEIYCKGTSLRIGTATGSQSFK 425
Query: 143 DEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLV 202
E +A + D S VDIL+ATPGRL+DH+ + +L+HL +LV
Sbjct: 426 KE----------QAILVGDSAHYYPGGSSKVDILIATPGRLIDHLTQSPNLSLQHLRFLV 475
Query: 203 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERG---F 259
+DE DRLL +++Q WL V R S+ + LP A + +++
Sbjct: 476 MDEADRLLNQSFQDWLQVVQAHLRYPPPT--SEDAAELPLAGDASAAPHVLALQQATTSM 533
Query: 260 KDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR------------YKLPERL 307
+ P L +++ SATL++DP +++ L+L +P+F+ E R + LP L
Sbjct: 534 SETPIQPLQQILCSATLSRDPRQVSALNLRNPVFVAVREARDDQMDELETEDNFALPATL 593
Query: 308 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHF-----------G 356
+ + L+ S KPL L LL + + FT SVES RL L+ F
Sbjct: 594 KEHMLVTSSGSKPLMLFYLLHAKSLSNVLCFTKSVESAQRLAKLVELFETEYASRSEGAD 653
Query: 357 ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYI 416
K+KE+SG R K L AF G+I +L+ SD + RG+D+ V +V++YD P +
Sbjct: 654 NQGFKVKEFSGSLPVPQRKKILAAFVAGEIDMLICSDIIARGIDLPSVAHVISYDVPVDM 713
Query: 417 KTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 456
+ Y+HR GRTARAG+ G ++L+ E FK LL A +
Sbjct: 714 RKYVHRVGRTARAGRPGDAWSLVESQEANFFKALLTDAQH 753
>gi|223999483|ref|XP_002289414.1| atp-dependent RNA helicase [Thalassiosira pseudonana CCMP1335]
gi|220974622|gb|EED92951.1| atp-dependent RNA helicase [Thalassiosira pseudonana CCMP1335]
Length = 494
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 182/454 (40%), Positives = 245/454 (53%), Gaps = 54/454 (11%)
Query: 70 RDLCINSPTGSGKTLSYALPIVQTLSN--------RAVRCLRALVVLPTRDLALQVKDVF 121
RD+C ++PTGSGKTL++ LP++ L N R R LRALVVLP RDLA QV DVF
Sbjct: 19 RDVCCHAPTGSGKTLAFVLPLLTALYNESPGQSCTRGFRRLRALVVLPGRDLAKQVHDVF 78
Query: 122 AAIAPAVGLSVGLAVG----QSSIADEISELIK---RPKLEAGICYDPEDVLQELQSAVD 174
A L +GLAVG +S + E L+ + + GI PE QSAVD
Sbjct: 79 VRYAKGSHLKIGLAVGGGKKKSDLVYERRSLVAYDGTTRRDNGIQVFPE---FGGQSAVD 135
Query: 175 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 234
ILVATPGRLMDH+++T GFTL+HL +LV+DE DRL+ + YQ W+ VL+ S++ NRF
Sbjct: 136 ILVATPGRLMDHLDSTPGFTLQHLRFLVIDEADRLVNQPYQNWVGRVLEA--SNSSNRFG 193
Query: 235 DASTFLPSAFGSLKTIRRCGVE--RGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
+ +P K G E G +P P L KM+ SATLTQDP KLA L L +P
Sbjct: 194 SS---VPVVRHGEKDQANTGGELVSGMFGRPVP-LRKMLFSATLTQDPQKLAVLGLKNPK 249
Query: 293 FLTTGETR------YKLPERLESYKLICESKLKPLYLVALLQSL-------------GEE 333
+ Y +PE L + C ++ KP+ L+ALL G
Sbjct: 250 HFDANQVENIKAGSYSVPEGLTERMVECTAEQKPMVLLALLLDTEQLHSDSAGDGVKGVN 309
Query: 334 KCIVFTSSVESTHRLCTLLNHFGEL-----RIKIKEYSGLQRQSVRSKTLKAFR----EG 384
IVFTSSV+STHRL LL E I E+S R+ L+ R
Sbjct: 310 LSIVFTSSVDSTHRLARLLQLLWEAGGYGPSSTIAEFSSSISAKQRAGILRRCRSSNVSN 369
Query: 385 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444
++ VLV SD M+RGMD+ V+ V+NYD P+Y KTY+HR GRTARAG+ G+ ++L ++
Sbjct: 370 RVSVLVCSDGMSRGMDLPCVSAVINYDVPSYAKTYVHRCGRTARAGKEGKAISVLKGGQI 429
Query: 445 KRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKS 478
+F+++ + S I LI+ Y++
Sbjct: 430 AKFQRMRRLIGGGSVEKMGIKKELIKGTLSTYQA 463
>gi|426199228|gb|EKV49153.1| hypothetical protein AGABI2DRAFT_201250 [Agaricus bisporus var.
bisporus H97]
Length = 602
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 169/471 (35%), Positives = 248/471 (52%), Gaps = 61/471 (12%)
Query: 30 DHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFE----------RDLCINSPTG 79
D+ L +++ L +GI+ LF VQ A+ I + RD+CI++PTG
Sbjct: 113 DNSTHLSEKMRRRLHGLGITELFAVQTALLPFLIPSSDVQHQLYLSTRPPRDVCISAPTG 172
Query: 80 SGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQS 139
SGKTL+YALPIV+ LS+R + LRAL++LPTRDL QV++ F + GL +G A GQ
Sbjct: 173 SGKTLAYALPIVEILSSRVLTQLRALIILPTRDLVAQVRETFEVLGKGRGLKIGTATGQH 232
Query: 140 SIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLC 199
S A E S+L+ D L S VDIL+ TPGRL+DH+N T FTL+HL
Sbjct: 233 SFAHEQSQLVN----------DQTSSLLGGSSRVDILICTPGRLIDHMNGTPNFTLQHLR 282
Query: 200 YLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGF 259
+LV+DE DRLL +++Q WL VL R + + T+ + R
Sbjct: 283 FLVIDEADRLLAQSFQDWLAQVLAALRPHRTPNCVPGTQV--DSIPHPDTVAPYLLHR-- 338
Query: 260 KDKPYPRL------------VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR------- 300
PYP K++ SATLT+DP K+A L+L P + ++R
Sbjct: 339 --LPYPHYPTFLTEVHESSCQKLLFSATLTRDPGKIASLELREPKYFIVQKSRESDGQDR 396
Query: 301 --------YKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352
+ +P L+ + L+CES KPL L+ L +VFT S EST RL L
Sbjct: 397 ILSVVMEKFSIPSTLK-HMLVCESSQKPLMFFHLVFHLNVTDALVFTKSSESTARLVRLF 455
Query: 353 NHFGELR-------IKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN 405
+ F + R + ++ YS R L+ F+ +I +L+ SD ++RG+D+ V+
Sbjct: 456 DFFQKWRTAESGKSLVVQAYSSDLSVGERKVILERFKAQEINILICSDLISRGIDISHVS 515
Query: 406 NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 456
+VV+YD P ++ Y+HR GRTARAG+ G + L+ + E + FK +L+ AD+
Sbjct: 516 HVVSYDVPVDMRKYVHRVGRTARAGRSGDAWALVEEQEARYFKNMLRDADH 566
>gi|260801978|ref|XP_002595871.1| hypothetical protein BRAFLDRAFT_84239 [Branchiostoma floridae]
gi|229281121|gb|EEN51883.1| hypothetical protein BRAFLDRAFT_84239 [Branchiostoma floridae]
Length = 806
Score = 268 bits (685), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 184/464 (39%), Positives = 254/464 (54%), Gaps = 48/464 (10%)
Query: 14 WMRSPVDVSLFED------CPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIG--- 64
W+ P S+ E+ P++ P + L+ L+ G+ +LFPVQ V +
Sbjct: 289 WLADP---SVIENDIQSNLVPVEGTPYVGEFLRNKLKENGVENLFPVQHQVIPAVLEDAE 345
Query: 65 -------PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117
G D+C+++PTGSGKTL++ +P+VQ L R V +RALVVLPT+DLA+Q+
Sbjct: 346 DGTIMGRAGFRPSDICVSAPTGSGKTLAFVIPVVQALLQRVVCEVRALVVLPTKDLAVQI 405
Query: 118 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177
VF L V GQ S+A E + L+K E+ Y QS DI+V
Sbjct: 406 YKVFNHYTSGSRLKVANCSGQKSLAAERNALVK----ESHGVY---------QSLADIVV 452
Query: 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS-DA 236
ATPGRL+DHI T GF L HL YLV+DE DR+L + Q WL V TR+ E + S +
Sbjct: 453 ATPGRLVDHIEKTPGFNLRHLRYLVIDEADRMLDQIKQDWLAKV---TRAVYEGQGSTEE 509
Query: 237 STFLPSAF--GSLKTIRRCG-VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLF 293
LP G L G + + Y L K++ SATL+Q+P KL QL+L HP
Sbjct: 510 KPGLPMMLWAGVLGGRTAPGPLTAANAARMYQPLQKLLFSATLSQNPEKLQQLNLFHPRL 569
Query: 294 LTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEK---CIVFTSSVESTHRLCT 350
T+ R+K +R + S+ K ++ G +K + FT S+ESTHRL
Sbjct: 570 FTSV-VRHK--QRKQETASAGSSEEKGTFVGKFTTPAGLQKFQHVLCFTGSLESTHRLYL 626
Query: 351 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 410
L FG + + E+S R+K L FR GKIQ++V SDAM RGMDVEGV V++Y
Sbjct: 627 LAKLFG--GVTVAEFSSNLPPDRRTKILTKFRTGKIQLIVCSDAMARGMDVEGVEVVISY 684
Query: 411 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 454
D P Y+KTYIHR GRTARAG+ GR F+L+ ++E + ++ LQ+A
Sbjct: 685 DVPPYVKTYIHRVGRTARAGKEGRAFSLVLQEE-EFLQEFLQEA 727
>gi|409078236|gb|EKM78599.1| hypothetical protein AGABI1DRAFT_74928 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 602
Score = 268 bits (684), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 169/477 (35%), Positives = 249/477 (52%), Gaps = 73/477 (15%)
Query: 30 DHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFE----------RDLCINSPTG 79
D+ L +++ L +GI+ LF VQ A+ I + RD+CI++PTG
Sbjct: 113 DNSTHLSEKMRRRLHGLGITELFAVQTALLPFLIPSSDVQHQLYLSTRPPRDVCISAPTG 172
Query: 80 SGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQS 139
SGKTL+YALPIV+ LS+R + LRAL++LPTRDL QV++ F + GL +G A GQ
Sbjct: 173 SGKTLAYALPIVEILSSRILTQLRALIILPTRDLVAQVRETFEVLGKGRGLKIGTATGQH 232
Query: 140 SIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLC 199
S A E S+L+ D L S VDIL+ TPGRL+DH+N T FTL+HL
Sbjct: 233 SFAHEQSQLVN----------DQTSSLLGGSSKVDILICTPGRLIDHMNGTPNFTLQHLR 282
Query: 200 YLVVDETDRLLREAYQAWLPTVLQL------------TRSDNENRFSDASTFL------P 241
+LV+DE DRLL +++Q WL VL TR D+ S +L P
Sbjct: 283 FLVIDEADRLLAQSFQDWLAQVLTALRPHRTQNCVPGTRVDSIPHPDTVSPYLLHRLPFP 342
Query: 242 SAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET-- 299
L + + K++ SATLT+DP K+A L+L P + ++
Sbjct: 343 HYSTFLTEVHESSCQ------------KLLFSATLTRDPGKIASLELREPKYFIVQKSSE 390
Query: 300 -------------RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTH 346
++ +P L+ + L+CES KPL L+ L +VFT S EST
Sbjct: 391 SDGQDHILSVVMEKFSIPSTLK-HMLVCESSQKPLMFFHLVFHLNVTDALVFTKSSESTA 449
Query: 347 RLCTLLNHFGELR-------IKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 399
RL L + F + R + ++ YS R L+ F+ +I +L+ SD ++RG+
Sbjct: 450 RLVRLFDFFQKWRAVESGKSLVVQAYSSDLSVGERKVILERFKAQEINILICSDLISRGI 509
Query: 400 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 456
D+ V++VV+YD P ++ Y+HR GRTARAG+ G + L+ + E + FK +L+ AD+
Sbjct: 510 DISHVSHVVSYDVPVDMRKYVHRVGRTARAGRSGDAWALVEEQEARYFKNMLRDADH 566
>gi|189217546|ref|NP_001121235.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 [Xenopus laevis]
gi|169642008|gb|AAI60740.1| LOC100158308 protein [Xenopus laevis]
Length = 678
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 182/483 (37%), Positives = 258/483 (53%), Gaps = 56/483 (11%)
Query: 3 EAKKKSMPVLP-WMRSP--VDVSLFED-CPLDHLPCLDPRLKVALQNMGISSLFPVQVAV 58
+A +K +PVLP W+ P + ++ ++ P+ +P L P++ L+ + FPVQ V
Sbjct: 179 KAVEKVLPVLPQWLTQPSFLQKNIKQNLVPIHDIPGLHPKVLKKLEVNKVKDFFPVQAEV 238
Query: 59 WQETI---------GPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108
+ G G + D+C+++PTGSGKTL++ +PIVQTL R V +RALVVL
Sbjct: 239 IPAVLDSSCHGFLLGKGGYRPSDVCVSAPTGSGKTLAFVIPIVQTLLQRVVCEVRALVVL 298
Query: 109 PTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQE 168
PT++LA QV VF +GL V + GQ S E LI++
Sbjct: 299 PTKELAQQVCKVFNTYVDGMGLKVVMIAGQKSFLKEQESLIQKTAFG------------- 345
Query: 169 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSD 228
S DILV TPGRL+DHI T GF L HL +LV+DE DR++ Q WL V +
Sbjct: 346 FSSLADILVCTPGRLVDHIQQTEGFNLRHLRFLVIDEADRMIDSMNQDWLNHVTKAVFRL 405
Query: 229 NENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDL 288
S F G L C P L K++ SATLTQ+P KL QL L
Sbjct: 406 EAG--SPNMLFTRKEPGILTAASSC-----LHQTP---LQKLLFSATLTQNPEKLKQLGL 455
Query: 289 HHP-LFLT--------TGETR--------YKLPERLESYKLICESKLKPLYLVALLQSLG 331
+ P LF++ + ET+ + LPE L Y + C KPL L+ L SL
Sbjct: 456 YQPRLFISKQKGNPNDSSETQMEPSISGNFSLPEGLTHYYIPCNLNSKPLILLHFLLSLR 515
Query: 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVS 391
+ + FT+S +++HRL L+ FG I + E+S R +TLK F +GK+Q+LVS
Sbjct: 516 FSRVLCFTNSRDASHRLYLLIRSFG--GIDVAEFSSRLSPGERKRTLKEFEQGKVQLLVS 573
Query: 392 SDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLL 451
+DA RG+D++GV ++NYD P +I+TY+HR GRTARAG+ G FT+L K + K + +L
Sbjct: 574 TDATARGIDIKGVKCIINYDAPQFIRTYVHRVGRTARAGKAGLAFTMLLKVQEKPYFGML 633
Query: 452 QKA 454
+ A
Sbjct: 634 RDA 636
>gi|195127527|ref|XP_002008220.1| GI11933 [Drosophila mojavensis]
gi|193919829|gb|EDW18696.1| GI11933 [Drosophila mojavensis]
Length = 670
Score = 266 bits (681), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 174/452 (38%), Positives = 246/452 (54%), Gaps = 57/452 (12%)
Query: 29 LDHLPCLDPRLKVALQNMGISSLFPVQVAV--W--QETIGPGLFE-RDLCINSPTGSGKT 83
+ LP L+ ++ AL+ M I LFPVQ AV W + P F RD+C+++PTGSGKT
Sbjct: 144 IKQLPYLEKYIRSALKQMKIKRLFPVQTAVIPWILEAQAKPEPFRPRDICVSAPTGSGKT 203
Query: 84 LSYALPIVQTLSNRAVRC-LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIA 142
L++A+PIVQ L+ R V+C +RALVVLP +LALQV VF+A+ L V L Q +
Sbjct: 204 LAFAIPIVQLLAKR-VQCKVRALVVLPVAELALQVYKVFSALCSLTELEVCLLSKQHRLE 262
Query: 143 DEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLV 202
DE +L+++ K G+ Y S VDI+V TPGRL+DH++AT+GF L+ L +LV
Sbjct: 263 DEQDKLVEQYK---GVYY----------SKVDIVVTTPGRLVDHLHATKGFCLKSLKFLV 309
Query: 203 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDK 262
+DE DR++ +Q WL + RS + + P + L + +
Sbjct: 310 IDEADRIMDAVFQNWLYHLDAHVRSTADQLLTGVQA--PLCYQELLN--------SWGKQ 359
Query: 263 PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET----------------------R 300
P+ K++ SATL+QDP KL L L P TT T +
Sbjct: 360 PH----KLLFSATLSQDPEKLQNLRLFQPKLFTTTLTMPVLQPALDNGELPDQTSTFIGK 415
Query: 301 YKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRL-CTLLNHFGELR 359
Y P L + E +LKPL L A++ ++ + FT+S ++ +RL C L++ F +
Sbjct: 416 YTTPAELTEQYCVTEMRLKPLTLYAMVLLNNWKRFLCFTNSADTANRLACVLVHLFKDST 475
Query: 360 IKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTY 419
I++KE S + R L F G I LV SDA+ RG+DV V+ VV+Y+ P +IKTY
Sbjct: 476 IRVKELSAKMSATKRGHRLSEFARGNIHGLVCSDALARGIDVPNVDVVVSYEAPRHIKTY 535
Query: 420 IHRAGRTARAGQLGRCFTLLHKDEVKRFKKLL 451
IHR GRTARAGQ G TLL + FKK+L
Sbjct: 536 IHRVGRTARAGQKGTAITLLTDKDQANFKKML 567
>gi|392573109|gb|EIW66250.1| hypothetical protein TREMEDRAFT_35235, partial [Tremella
mesenterica DSM 1558]
Length = 694
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 169/451 (37%), Positives = 252/451 (55%), Gaps = 46/451 (10%)
Query: 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFE------RDLCINSPTGSGKTLSYA 87
+ + L +G+ F VQ A+ + + L D I++PTGSGKTL+YA
Sbjct: 218 AISEHMSARLSELGVIDFFAVQAALLPKLLPLSLTPLKYANLHDYLISAPTGSGKTLAYA 277
Query: 88 LPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISE 147
+PI++ LS R + LRAL+VLPT+DL +QV++ +A L +G GQ S A E
Sbjct: 278 IPIIEILSARTITRLRALIVLPTKDLVVQVRETLELLAKGTDLKIGTIGGQHSFAHEQKV 337
Query: 148 LIKRPKLEAGICYDPEDV-LQEL--QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVD 204
L+ ED+ ++EL S VDIL+ATPGRL+DH++ T FTL+HL +LV+D
Sbjct: 338 LV-------------EDLEIKELGGSSKVDILIATPGRLIDHLSQTPNFTLQHLRFLVID 384
Query: 205 ETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGV---ERGFKD 261
E DRLL ++YQ WL VL+ TR ++N + +P + + CG+ D
Sbjct: 385 EADRLLNQSYQDWLMMVLRHTRPTDDN-MALEREIMPDDHVAPLWMSACGLGDKSHSLLD 443
Query: 262 KPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL------------TTGETRYKLPERLES 309
P + K++ SATLT+DP K+A L L+ P + + GE ++ +P L
Sbjct: 444 PPEQQCQKLLFSATLTRDPAKVASLSLNSPRYYIIQSSLAQPSAHSIGE-QFAIPASLTE 502
Query: 310 YKLICESKLKPLYLVALLQS--LGEEKCIVFTSSVESTHRLCTLLNHF----GELRIKIK 363
+ LI +LKPL L+ L+ S ++FT SVES RL LL +F G ++ ++
Sbjct: 503 FMLILPPQLKPLNLIHLIHSPEYAVSSALIFTKSVESCVRLVKLLEYFEVAFGGGKV-VQ 561
Query: 364 EYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRA 423
Y+ R + R K L AF +G +Q+LV SD + RGMD+ V++V++YD P ++ Y+HR
Sbjct: 562 GYTSDMRPAERKKLLAAFGQGDVQLLVCSDLIARGMDLPTVSHVISYDIPLDMRKYVHRV 621
Query: 424 GRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 454
GRTARAG+ G +TL+ K E FK +L+ A
Sbjct: 622 GRTARAGRSGTAWTLVEKQEALHFKSILKSA 652
>gi|161611979|gb|AAI55869.1| LOC100135117 protein [Xenopus (Silurana) tropicalis]
Length = 644
Score = 266 bits (679), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 184/484 (38%), Positives = 256/484 (52%), Gaps = 71/484 (14%)
Query: 6 KKSMPVLP-WMRSP--VDVSLFED-CPLDHLPCLDPRLKVALQNMGISSLFPVQV----A 57
+K +PVLP W+ P V ++ ++ P+ + CL P++ L+ + LFPVQ A
Sbjct: 155 EKVLPVLPQWLAQPSLVQKNIKQNLVPIHDIHCLHPKVLKKLEANKVKYLFPVQAEVIPA 214
Query: 58 VWQET-----IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111
+ T +G G + D+C+++PTGSGKTL++ +PIVQ L R V +RALVVLPT+
Sbjct: 215 ILDSTCHGFLLGKGGYRPSDVCVSAPTGSGKTLAFVIPIVQALLQRVVCEVRALVVLPTK 274
Query: 112 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 171
+LA QV VF +GL V + GQ S E LI + G C S
Sbjct: 275 ELAQQVCKVFNTYVDGMGLKVVMVTGQKSFLKEQESLIHKTAF--GFC-----------S 321
Query: 172 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP----TVLQLTRS 227
DILV TPGRL+DHI T GF L HL +LV+DE DR++ Q WL V Q+ +
Sbjct: 322 LADILVCTPGRLVDHIQQTEGFNLRHLRFLVIDEADRMIDSMNQDWLSHVTKAVFQVV-A 380
Query: 228 DNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLD 287
D+ N F G L C P L K++ SATLTQ+P KL QL
Sbjct: 381 DSPNML-----FTRKEPGILTAASSC--------LPQTPLQKLLFSATLTQNPEKLKQLG 427
Query: 288 LHHPLFLTT---------GETR--------YKLPERLESYKLICESKLKPLYLVALLQSL 330
L+ P T+ ET+ + LPE L Y + C KPL L+ L SL
Sbjct: 428 LYQPRLFTSKQKGTSDDSSETQMESSTSGNFSLPEGLTHYYIPCNLNSKPLILLHFLLSL 487
Query: 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 390
+ + FT+S +++HR FG I + E+S R KTLK F +GK+Q+L+
Sbjct: 488 RFSRVLCFTNSRDASHR-------FG--GISVAEFSSRLSPGERKKTLKEFEQGKVQLLI 538
Query: 391 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
S+DA RG+D++GV V+NYD P +I+TY+HR GRTARAG+ G FT+L K + + +
Sbjct: 539 STDATARGIDIKGVKCVINYDAPQFIRTYVHRVGRTARAGKAGLAFTMLLKVQENPYFSM 598
Query: 451 LQKA 454
L+ A
Sbjct: 599 LRDA 602
>gi|194750630|ref|XP_001957633.1| GF10505 [Drosophila ananassae]
gi|190624915|gb|EDV40439.1| GF10505 [Drosophila ananassae]
Length = 683
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 177/484 (36%), Positives = 257/484 (53%), Gaps = 64/484 (13%)
Query: 5 KKKSMPVLPWMRSPV---------DVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQ 55
+K M + W+ P D + + +D LP L+ +AL+ M I LFPVQ
Sbjct: 106 RKVEMQLPNWLAHPTIIAGGSLQADEEISDAEAIDQLPYLEKSTCLALKQMKIKRLFPVQ 165
Query: 56 VAV--W---QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110
V W ++ P RD+C+++PTGSGKTL++A+PIVQ L+NR +RALVVLP
Sbjct: 166 REVIPWILEAQSKPPPFRPRDICVSAPTGSGKTLAFAIPIVQLLANRVECKIRALVVLPV 225
Query: 111 RDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 170
+LALQV V +A+ L V L Q + DE +L++ L G Y
Sbjct: 226 AELALQVYQVISALCNKTELEVCLLSKQHKLEDEQEKLVE---LYKGKYY---------- 272
Query: 171 SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 230
S VDI+V TPGRL+DH++AT+GF L++L +L++DE DR++ +Q WL + + +
Sbjct: 273 SKVDIVVTTPGRLVDHLHATKGFCLKNLKFLIIDEADRIMDAVFQNWLYHLDSHVKETTD 332
Query: 231 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 290
A T P + L++ F ++P+ K++ SATL+QDP KL L L
Sbjct: 333 QLL--AGTQAPLCYAELQS--------SFGNQPH----KLLFSATLSQDPEKLQNLRLFQ 378
Query: 291 P-LFLT--------TGET-------------RYKLPERLESYKLICESKLKPLYLVALLQ 328
P LF T TGE +Y P L I E +LKPL L AL++
Sbjct: 379 PRLFTTVMPVLREPTGEEGDAEADTDGQFLGKYTTPAELTEQICITEMRLKPLTLYALVE 438
Query: 329 SLGEEKCIVFTSSVESTHRLCTLL-NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ + FT+S + RL ++ F K+ E SG VR + LK+F GKI
Sbjct: 439 KYKWKRFLCFTNSTDQASRLAFVMATLFENSETKVAELSGNLSALVRKQNLKSFANGKIN 498
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 447
L+ SDA+ RG+DV ++ V++Y+ P +IKT+IHR GRTARAG+ G TLL + + F
Sbjct: 499 GLICSDALARGIDVADIDVVLSYEAPRHIKTHIHRVGRTARAGRKGTAVTLLTEQDQAAF 558
Query: 448 KKLL 451
KK+L
Sbjct: 559 KKML 562
>gi|353239546|emb|CCA71453.1| related to DBP6-ATP-dependent RNA helicase [Piriformospora indica DSM
11827]
Length = 1596
Score = 265 bits (676), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 173/464 (37%), Positives = 242/464 (52%), Gaps = 54/464 (11%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVW--------QETI--GPGLFERDLCINSPTGSGKTL 84
L R+ L ++GI LF VQ + ++++ P RD+C ++PTGSGKTL
Sbjct: 1103 LSSRMLRRLADLGIKELFAVQTVLLPFLLPEDLEQSMLYQPSHPPRDVCASAPTGSGKTL 1162
Query: 85 SYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADE 144
+YA+PI + LS R V LRALVV+PTRDL QV++ F A L +G+A GQ S A E
Sbjct: 1163 AYAIPITEMLSTRIVTRLRALVVVPTRDLVQQVRETFEACGKGTKLQIGIATGQHSFAHE 1222
Query: 145 ISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVD 204
+A I D + +S VDIL+ TPGRL+DHIN T FTL+HL +LV+D
Sbjct: 1223 ----------QAQIVGDISERSLGGRSRVDILICTPGRLIDHINGTPNFTLQHLRFLVID 1272
Query: 205 ETDRLLREAYQAWLPTVLQLTR--SDNENRFS--DASTFLPSAFGSLKTIRRCGVERGFK 260
E DRLL +++Q WL VL S N R S D S P G T V
Sbjct: 1273 EADRLLNQSFQEWLKQVLNAISLPSPNGPRLSEGDRSELFPVPDGIAPTWLSALVPTSPT 1332
Query: 261 D---KPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL------------------TTGET 299
D P K++ SATLT+DP K+ +L L P + T
Sbjct: 1333 DIDEAPRSSCQKLLFSATLTRDPAKIVELQLRDPKYFIVKGISASQEVGDAMDVNVTHVE 1392
Query: 300 RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHF---- 355
++ P L + ++CES KPL L L +VFT S EST RL LL +F
Sbjct: 1393 SFETPGTLREWMIVCESINKPLLLFYLAHKQQISDMLVFTKSAESTTRLLRLLGYFEDAM 1452
Query: 356 -----GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 410
G +I + +S S R L+ F+ +I +L+ SD ++RG+D+ V++VVNY
Sbjct: 1453 AEREVGSKKIIAEAFSSDLAPSQRKTVLEKFKAKQIDMLICSDLVSRGIDIPHVSHVVNY 1512
Query: 411 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 454
D P ++ YIHR GRTARAG+ G ++L+ + E+ FK ++++A
Sbjct: 1513 DIPVDVRKYIHRVGRTARAGREGDAWSLVEEQEMHHFKLMMKEA 1556
>gi|390594629|gb|EIN04039.1| DEAD-domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 636
Score = 261 bits (667), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 172/489 (35%), Positives = 248/489 (50%), Gaps = 76/489 (15%)
Query: 34 CLDPRLKVALQNMGISSLFPVQVAVW----------QETIGPGLFERDLCINSPTGSGKT 83
L +++ L+ +GI LF VQ A+ + P RD C+++PTGSGKT
Sbjct: 122 SLSEKMRRRLKELGIGELFAVQTALLPFLLPSSPAQRALYMPYDPPRDACVSAPTGSGKT 181
Query: 84 LSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIAD 143
L+Y +PIV+ L++R V LRALVVLPTRDL QV++ F A+ GL + A GQ S A
Sbjct: 182 LAYVIPIVEVLASRIVTRLRALVVLPTRDLVAQVRETFEAVGKGRGLKIATATGQHSFAH 241
Query: 144 EISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVV 203
E ++L+ D L S VD+L+ TPGRL+DH+ T FTL+HL +LV+
Sbjct: 242 EQTQLMA----------DRSKPLLGGSSKVDVLICTPGRLIDHLEGTPNFTLQHLRFLVI 291
Query: 204 DETDRLLREAYQAWLPTVLQLTRSDNENRFSDA-----------STFLPSAFGSLKTI-- 250
DE DRLL + +Q WL VL TR + + A + L AF SL +
Sbjct: 292 DEADRLLAQLFQDWLAKVLAATRPPSSLSSAFALSSPSSSVVPHADALAPAFASLLGLSP 351
Query: 251 -RRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP-LFLTTGE---------- 298
G+ F + K++ SATLT+DP KLA L L P F+ GE
Sbjct: 352 SSPSGLLTEFDEPKASSCQKLLFSATLTRDPGKLAALALREPRYFVVAGERKRAQGAEER 411
Query: 299 ---------------TRYKLPERLESYKLICESKLKPLYLVALLQSLG----EEKCIVFT 339
++ +PE LE + L+ + KPL L+ L+ + G +VF
Sbjct: 412 EEEAGKMDGVVDFVMEKFSVPETLEEHYLVTSAAQKPLALMYLVHARGVGADSGGVLVFA 471
Query: 340 SSVESTHRLCTLLNHF------------GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
S E+ RL + F G R+ +K YS R L+ F+ KI
Sbjct: 472 KSAEAVARLVKFVEFFEEARVDALPADTGRRRVSVKAYSSDLAPGERRAILEGFKARKID 531
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 447
+LV SD + RGMD+ V +VV+YD P ++ Y+HR GRTARAG+ G ++L+ + E + F
Sbjct: 532 MLVCSDLVARGMDISHVEHVVSYDAPVDVRKYVHRVGRTARAGRKGCAWSLVEEQEARWF 591
Query: 448 KKLLQKADN 456
K++L++AD+
Sbjct: 592 KEMLREADH 600
>gi|195014606|ref|XP_001984044.1| GH15223 [Drosophila grimshawi]
gi|193897526|gb|EDV96392.1| GH15223 [Drosophila grimshawi]
Length = 675
Score = 261 bits (667), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 170/455 (37%), Positives = 244/455 (53%), Gaps = 55/455 (12%)
Query: 25 EDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAV--W--QETIGPGLFE-RDLCINSPTG 79
++ + L L+ AL+ M I LFPVQ AV W + P F RD+C+++PTG
Sbjct: 137 DETSIKQLAYLEKHTCSALKQMKIERLFPVQRAVIPWILEAQSKPAPFRPRDICVSAPTG 196
Query: 80 SGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQS 139
SGKTL++A+PIVQ L+NR +RALVVLP +LALQV VF+ + L V L Q
Sbjct: 197 SGKTLAFAIPIVQLLANRVECKVRALVVLPVAELALQVYKVFSVLCSKTELEVCLLSKQH 256
Query: 140 SIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLC 199
+ DE +L+++ K G+ Y S VDI+V TPGRL+DH++AT GF L+ L
Sbjct: 257 RLEDEQEKLLEQYK---GVYY----------SKVDIVVTTPGRLVDHLHATEGFCLKSLQ 303
Query: 200 YLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGF 259
+LV+DE DR++ +Q WL + R+ + + P + L +
Sbjct: 304 FLVIDEADRIMDAVFQNWLYHLDSHVRTTADQLLTGVQA--PLCYQELLN--------SY 353
Query: 260 KDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET-------------------- 299
+P+ K++ SATL+QDP KL L L P TT T
Sbjct: 354 GKQPH----KLLFSATLSQDPEKLQNLRLFQPKLFTTVFTLPVLPSALDIAELPEQSSQF 409
Query: 300 --RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNH-FG 356
+Y P L + E +LKPL L ++Q+ G ++ + FT+S ++ RL +L H F
Sbjct: 410 IGKYTTPTELTEQYCVTELRLKPLTLYTMVQTYGWKRFLCFTNSADTADRLAFVLKHLFQ 469
Query: 357 ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYI 416
I ++E S + VR++ L F +G I LV SDA+ RG+DV V+ V++Y+ P +I
Sbjct: 470 GSPITVEELSANMKVGVRARRLADFAKGSIHGLVCSDALARGIDVPNVDIVLSYEAPRHI 529
Query: 417 KTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLL 451
KTYIHR GRTARAGQ G TLL + + FKK+L
Sbjct: 530 KTYIHRVGRTARAGQKGTAITLLTEKDQAPFKKML 564
>gi|303273266|ref|XP_003055994.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462078|gb|EEH59370.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 526
Score = 261 bits (666), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 169/480 (35%), Positives = 247/480 (51%), Gaps = 59/480 (12%)
Query: 12 LPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERD 71
+ W SPV + + HL + + + LQ G+ + VQ A W T G F+ D
Sbjct: 1 MSWFNSPVSLLDLGENETTHLRGIHNKFRSVLQVSGLDQVLTVQSATWLATGGGMCFDCD 60
Query: 72 LCINSPTGSGKTLSYALPIVQTLSNR-AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGL 130
+C+ PTGSGKTL+YALP++Q L++R +R RAL+V+PT DLA QV + + + A GL
Sbjct: 61 ICVRGPTGSGKTLAYALPLLQALASRPGLREQRALIVIPTLDLATQVSQLLSPLCDATGL 120
Query: 131 SVGLAV---GQSSIADEIS----ELIKRPKLEAGICYDPED---VLQELQSAVD------ 174
+VG+ + + D ++ + RP A + P D V ++ A D
Sbjct: 121 TVGVPLRTHQDKCLVDRLTLENLATLNRPS-HAALILQPVDHKIVRARIRQATDFSNAIP 179
Query: 175 ----------ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224
++VATPGRL+ H+ L L +LV+DE DR+LR++YQ +
Sbjct: 180 LDSASEERFDVMVATPGRLVAHVKEVYYQLLSGLEFLVIDEADRVLRQSYQGCI------ 233
Query: 225 TRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 284
+ + S G+ R G + RL K+++SATLT D + A
Sbjct: 234 -------------SLIDSGVGA----RSPHTGNGDRSVSSRRLRKLLISATLTHDSVRFA 276
Query: 285 QLDLHHPLFLTTG--------ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCI 336
L L+ P + + +++Y +P L+ ++ E+ KPL L ALL+ +G I
Sbjct: 277 HLHLNSPRVIQSSAYESDSLCDSQYVIPSDLDENFIVTEAIKKPLALCALLKRIGRVPVI 336
Query: 337 VFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT 396
VFTSSV THRL LL+ L EYS Q VRS L +FR G Q+LV+SDA T
Sbjct: 337 VFTSSVAITHRLFLLLDSIKGLPSSAVEYSSSFSQGVRSAALDSFRSGSKQLLVASDAAT 396
Query: 397 RGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 456
RG+D++ V V++YD P + TYIHR GRTARAGQ G +T+ E +RF+ +L K D
Sbjct: 397 RGLDIKHVAAVISYDVPLHQNTYIHRVGRTARAGQKGTAYTICRSSETQRFRNILTKVDG 456
>gi|255071295|ref|XP_002507729.1| predicted protein [Micromonas sp. RCC299]
gi|226523004|gb|ACO68987.1| predicted protein [Micromonas sp. RCC299]
Length = 523
Score = 261 bits (666), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 178/456 (39%), Positives = 244/456 (53%), Gaps = 51/456 (11%)
Query: 29 LDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL 88
+D LP L+P+L VAL+ I F +Q W+ T G F+RDLC+++PTGSGKTL+YA+
Sbjct: 19 IDLLPGLEPKLCVALKTSKICRPFKIQADTWRHTGGGLSFDRDLCVSAPTGSGKTLAYAI 78
Query: 89 PIVQTLSNRA-VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVG-------QSS 140
PIVQ L + + LR+LV++PT DLA QV +VF + AVGL V +A G +
Sbjct: 79 PIVQALCRQTKLSHLRSLVIVPTGDLAAQVGNVFKPLCQAVGLKVSIAQGSGIKSLYHND 138
Query: 141 IADEISELIKRPKLEAGICYD--PEDVLQELQSA-------VDILVATPGRLMDHINATR 191
E + P ++ + + +L S VDILV PGRL+ I
Sbjct: 139 AFGEQNAFRHHPAVKQKFITSLTVQTTVTDLTSNTEADIRDVDILVTPPGRLVTLIRRFA 198
Query: 192 GFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIR 251
L+ + +LV+DE DR+LR+ YQ WLP V NR TF ++ G R
Sbjct: 199 RLFLDRVEFLVIDEADRVLRQTYQGWLPLV---------NRTVVTGTF-HTSLGDRGASR 248
Query: 252 RCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT------GETRYKLPE 305
R RL K++ SATLTQDP +LA L L P ++T E RY LP
Sbjct: 249 R-------------RLKKLLFSATLTQDPGRLAGLHLKAPHRISTVVSQAMRENRYFLPP 295
Query: 306 RLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEY 365
L+ Y +I K L L ALL+ +G IVFT+SV++T RL LL+ L K EY
Sbjct: 296 GLKEYVIISRGDEKLLVLCALLKRIGPTPAIVFTASVDATRRLFRLLHLMIGLPSKPVEY 355
Query: 366 SGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGR 425
S R+++LK FR G+ +LV+SDA TRG+D E V ++YD P + KTY+HR GR
Sbjct: 356 SSYAPLLHRTESLKLFRSGRCSLLVASDAATRGLDFEHVGVTISYDVPTHPKTYVHRVGR 415
Query: 426 TARAGQLGRCFTLLHKDEVKRFKKLL-----QKADN 456
ARA + G +T+ EV +F +L +K DN
Sbjct: 416 AARAQRRGLAYTICRPTEVDKFHLMLTNIGVRKEDN 451
>gi|281209875|gb|EFA84043.1| putative RNA helicase [Polysphondylium pallidum PN500]
Length = 559
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 162/443 (36%), Positives = 239/443 (53%), Gaps = 47/443 (10%)
Query: 43 LQNMGISSLFPVQ---VAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV 99
L + GI L VQ V T G D+C+ +PTGSGKTL+Y LPIVQ L NR V
Sbjct: 51 LNDQGIVELLAVQNEIVPFIARTEG-----HDICVCAPTGSGKTLAYVLPIVQKLYNRVV 105
Query: 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 159
R LR + ++PT DL Q + F +I L V +G S A E S ++
Sbjct: 106 RRLRVICIVPTHDLVTQTEATFKSITKGTDLVVE-TLGLRSFALEQSLIVSSH------- 157
Query: 160 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 219
++ E+ QS VDI+V TPGRL++H+N T GF L+HL YLV+DE DRLLRE++Q WL
Sbjct: 158 FNDENNSVTYQSLVDIIVCTPGRLVEHLNETPGFDLQHLTYLVIDEADRLLRESFQYWLE 217
Query: 220 TVLQLTRSDNENRFS---------DASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270
V+ + E S S + ++ G R FK+ R++K+
Sbjct: 218 KVMDSSSVSKERLISIGSRGDISISDSKYNNTSSGGSSNFRSHIDHLSFKE---SRVIKL 274
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTG---ETRYKLPERLESYKLICESKLKPLYLVALL 327
+LSAT++ +P K++ L L+ PL+ + E +Y +P+ L+ + C S KPL L++++
Sbjct: 275 LLSATMSYNPEKISLLKLNAPLYFQSNKISELKYTIPDTLKESYIACHSDQKPLALISVI 334
Query: 328 QSLGEEK-------------CIVFTSSVESTHRLCTLLNHFGEL---RIKIKEYSGLQRQ 371
++ + K I FT+S++ T RL TLL GE+ ++K +YS
Sbjct: 335 GNIFKSKQQQQTDQNDNIARIICFTNSIDITQRLNTLLGFIGEVDGVKLKPAQYSSSINS 394
Query: 372 SVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ 431
RS LK F G I VL+ SD + RGMD+ V+ V+NY+ P Y+HR GRTARAG+
Sbjct: 395 IERSNLLKLFANGDINVLICSDILARGMDLPNVDAVINYNAPPSAVLYVHRVGRTARAGR 454
Query: 432 LGRCFTLLHKDEVKRFKKLLQKA 454
G +T++ ++E F +++KA
Sbjct: 455 KGSAYTIVAREEKSYFTNMIKKA 477
>gi|294464732|gb|ADE77873.1| unknown [Picea sitchensis]
Length = 230
Score = 257 bits (657), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 136/224 (60%), Positives = 171/224 (76%), Gaps = 5/224 (2%)
Query: 94 LSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPK 153
LS R ++ LRALVVLPTRDLA+QVK VF AIAPAVGLSVGLAVGQ+S+A + ++ I+ +
Sbjct: 2 LSRRTLQYLRALVVLPTRDLAIQVKTVFDAIAPAVGLSVGLAVGQTSVAADTAQFIRHRR 61
Query: 154 LEAGICYDPEDV-LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE 212
DP+ + + +S+VDIL+ATPGRLMDHI++TRGFTLEHLCYLVVDETDRLLRE
Sbjct: 62 NSMQNLSDPKGMEMSTSESSVDILIATPGRLMDHISSTRGFTLEHLCYLVVDETDRLLRE 121
Query: 213 AYQAWLPTVLQLTRSD-NENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
AYQ WLP VL +S+ +ENR + S+ + + G + T RR + RGFK K PR++KM+
Sbjct: 122 AYQYWLPNVLSTAQSNHHENRGATWSS-VSARLGPITTFRRDVLGRGFKTKTDPRVMKMI 180
Query: 272 LSATLTQDPNKLAQLDLHHPLFL--TTGETRYKLPERLESYKLI 313
LSATLT+DP+KL+QL LH PLFL T E RYKLPE+LE Y L+
Sbjct: 181 LSATLTRDPSKLSQLALHQPLFLASTGAEKRYKLPEQLEIYTLV 224
>gi|195428034|ref|XP_002062080.1| GK17342 [Drosophila willistoni]
gi|194158165|gb|EDW73066.1| GK17342 [Drosophila willistoni]
Length = 681
Score = 257 bits (657), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 173/449 (38%), Positives = 241/449 (53%), Gaps = 53/449 (11%)
Query: 29 LDHLPCLDPRLKVALQNMGISSLFPVQVAV--W--QETIGPGLFE-RDLCINSPTGSGKT 83
L L L + AL+ M I FPVQ AV W + P F RD+C+++PTGSGKT
Sbjct: 141 LQQLGYLKSFTRQALKQMKIKRPFPVQRAVIPWILEAHAKPEPFRPRDICVSAPTGSGKT 200
Query: 84 LSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIAD 143
L++A+PIVQ LS R +RALVVLP +LALQV V +++ L V L Q + D
Sbjct: 201 LAFAIPIVQLLSQRVECKVRALVVLPVAELALQVYKVISSLCSKTELEVCLLSKQHRLED 260
Query: 144 EISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVV 203
E +L++ L G Y S VDI+V TPGRL+DH++AT+GF L+ L +LV+
Sbjct: 261 EQEKLLE---LYKGKYY----------SKVDIVVTTPGRLVDHLHATKGFCLKSLQFLVI 307
Query: 204 DETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKP 263
DE DR++ +Q WL + R + S T P + L + F +P
Sbjct: 308 DEADRIMDAVFQNWLYHLDTHVRETTDQLLS--GTQAPLCYAELLS--------SFGKQP 357
Query: 264 YPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT-----------GET---------RYKL 303
+ K++ SATL+QDP KL L L P TT G+T +Y
Sbjct: 358 H----KLLFSATLSQDPEKLQNLRLFQPKLFTTVLNLPVFQLNEGKTDSVQDQIVGKYTT 413
Query: 304 PERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN-HFGELRIKI 362
P L + E +LKPL L AL+Q ++ + F++S ++ +RL +L F I +
Sbjct: 414 PAELTEQYCVTEMRLKPLTLFALIQQYKWKRFLCFSNSADTANRLAFVLKILFQSYDITV 473
Query: 363 KEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHR 422
+E SG RS TL F GKI L+ SDA+ RG+DV V+ V++Y+ +IKTYIHR
Sbjct: 474 EELSGNMSALERSTTLNNFARGKINGLICSDALARGIDVADVDIVISYEAARHIKTYIHR 533
Query: 423 AGRTARAGQLGRCFTLLHKDEVKRFKKLL 451
GRTARAG+LG TLL ++ +FKK+L
Sbjct: 534 VGRTARAGKLGTAVTLLSDQDLDQFKKML 562
>gi|389750259|gb|EIM91430.1| DEAD-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 725
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 166/472 (35%), Positives = 235/472 (49%), Gaps = 91/472 (19%)
Query: 43 LQNMGISSLFPVQVAVWQETIGPGLFER----------DLCINSPTGSGKTLSYALPIVQ 92
L+ +GI LF VQ + + G F+R D+C+++PTGSGKTL+Y LPI++
Sbjct: 260 LKELGIEELFAVQTTLLPLLLPSGPFKRSLYLPYDPPQDICVSAPTGSGKTLAYVLPIIE 319
Query: 93 TLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
LS R V LRAL+VLPTRDL QV++ F AI GL +G A GQ S A E ++L
Sbjct: 320 ILSARIVTRLRALIVLPTRDLVTQVRETFEAIGKGRGLKIGTATGQHSFAHEQNQL---- 375
Query: 153 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE 212
V + VD+L+ TPGRL+DH+N T F+L+HL +LV+DE DRLL +
Sbjct: 376 ------------VADKSAHKVDVLICTPGRLIDHLNGTPNFSLQHLRFLVIDEADRLLAQ 423
Query: 213 AYQAWLPTVLQLTRSDNENRFSDASTFLPSA----FGSLKTIRRCGVERGFKDKPYPRLV 268
++Q WL VL TR T PSA GS + G++ + D P +
Sbjct: 424 SFQDWLAQVLAATRP------PPVPTHDPSAPASTSGSFTVPQDNGIDIPYPDALSPSFL 477
Query: 269 -----------------------KMVLSATLTQDPNKLAQLDLHHPLFL-----TTGE-- 298
K++ SATL DP K+ L+L ++ GE
Sbjct: 478 HLLRPPSFAMITDIDTPRESSCQKLLFSATLMSDPGKIKALELRDAKYIVVQGQANGEGV 537
Query: 299 -----TRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN 353
R+ +P L + L+ S KPL L L+ + + +VFT S EST RL L
Sbjct: 538 LGVVMERFSMPATLTEHMLVVPSSQKPLMLFHLVHAHNVKNALVFTKSAESTGRLVRLFQ 597
Query: 354 HFGELRIK--------------------IKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 393
F RI+ +K YS + R L+ R+G + +LV SD
Sbjct: 598 FFERARIQAQSQSSMDVDRSGQDAREVVVKAYSSDLGAAERRGLLEKLRDGTVDILVCSD 657
Query: 394 AMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 445
++RG+D+ V +VV+YD P I+ Y+HR GRTARAG+ G +TL+ + EV+
Sbjct: 658 LVSRGIDISIVQHVVSYDAPVDIRKYVHRVGRTARAGRDGDAWTLVEEQEVR 709
>gi|170098937|ref|XP_001880687.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644212|gb|EDR08462.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 510
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 169/451 (37%), Positives = 244/451 (54%), Gaps = 60/451 (13%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVW-----QETIGPGLF-----ERDLCINSPTGSGKTL 84
L +++ L+++GI+ LF VQ ++ + + L+ RD+CI++PTGSGKTL
Sbjct: 69 LSAKIRKRLKSIGITELFAVQTSLLPFLLPHDPLARRLYLPYDPPRDVCISAPTGSGKTL 128
Query: 85 SYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADE 144
+Y LPIV+TLS R V LRALVVLPTRDL QV++ F AI GL +G A GQ+S A E
Sbjct: 129 AYVLPIVETLSPRIVTRLRALVVLPTRDLVSQVRETFEAITNNRGLKIGTATGQNSFAHE 188
Query: 145 ISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVD 204
++L+ L S VDIL+ TPGRLMDH+ T F+L+HL +LV+D
Sbjct: 189 QAQLVN----------------NVLPSKVDILICTPGRLMDHLMGTPNFSLQHLRFLVID 232
Query: 205 ETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTF---------LPSAFGSLKTIRRCGV 255
E DRLL +++Q WL VL TR ++ S +S L AF L+ + +
Sbjct: 233 EADRLLAQSFQDWLSRVLAATRPHVKSSSSSSSPSPHSLPESDGLSPAF--LQRLSLPDI 290
Query: 256 ERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL-----TTGE-----TRYKLPE 305
++ K++ SATLT+DP K+A L+L P + T GE Y +P
Sbjct: 291 PAFQHEEKETSCQKLLFSATLTRDPAKIAALNLRDPKYFIVQSRTDGEELHVLENYSMPP 350
Query: 306 RLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIK---- 361
L ++ ++ S KPL L+ +VFT S +ST RL L F E R++
Sbjct: 351 TL-THMIVSNSSKKPLVFFHLIHRQKMRNVLVFTKSADSTTRLVRLFEFFEEARLEKEPG 409
Query: 362 --------IKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP 413
+ YS S R L F+ +I +L+ SD ++RG+D+ V++VVNYD P
Sbjct: 410 TAGEESIIARAYSSDLPPSERKAILDQFKAQQIHILICSDLISRGIDITHVSHVVNYDVP 469
Query: 414 AYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444
++ Y+HR GRTARAG+ G +TL+ + EV
Sbjct: 470 VDMRKYVHRVGRTARAGRAGDAWTLVEEQEV 500
>gi|405968018|gb|EKC33126.1| ATP-dependent RNA helicase DDX51 [Crassostrea gigas]
Length = 1179
Score = 255 bits (652), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 181/517 (35%), Positives = 247/517 (47%), Gaps = 101/517 (19%)
Query: 11 VLP-WMRSP--VDVSLFEDCPL-DHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIG-- 64
VLP W+ SP + L + L LDP + + L+ I FPVQ+ V E +
Sbjct: 212 VLPDWLSSPNVIASDLKQKTTLVSEFKGLDPDIHLNLKENKIDYFFPVQMQVIPEILDTV 271
Query: 65 --------PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116
G D+C+++PTGSGKTL++ LPIVQ L +R + +RA+VVLP RDLA+Q
Sbjct: 272 RYGFVLGRAGFRPPDICVSAPTGSGKTLAFVLPIVQALKSRVLCRIRAMVVLPVRDLAVQ 331
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDIL 176
V VF L VG+ VGQ + E L+++ + L+S VDI+
Sbjct: 332 VFKVFLQYTKGTNLKVGMIVGQKQFSVEQHALVRQR-------------VGGLESKVDIV 378
Query: 177 VATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDA 236
VATPGRL+DHIN T GF+L L +LV+DE DR++ Q WL V EN
Sbjct: 379 VATPGRLVDHINKTPGFSLTDLRFLVIDEADRIMEHVKQDWLSHV--------ENAVFSG 430
Query: 237 STFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT 296
PS SL C K + L K++ SATL+Q+P KL QL+L P T+
Sbjct: 431 GRTAPS---SLNVYNSC--------KHHMPLQKLLFSATLSQNPEKLQQLNLFQPKLFTS 479
Query: 297 -------------------------------GET------RYKLPERLESYKLICESKLK 319
GE +Y P L+ Y + E+ K
Sbjct: 480 VVDGGSLPRPLESEGEGNKDDQVTDRLSGPGGEVKGQFVGKYTTPLGLKEYTVEVEAFEK 539
Query: 320 PLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLK 379
PL ++ L +L +L L+ FG I + E + + S RSK LK
Sbjct: 540 PLVILHFLHNL----------------QLYHLIRLFG--GINVAEITAKLQASRRSKVLK 581
Query: 380 AFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439
F+ G I +L+ SDAM RGMD++ V V++YD P YIKTYIHR GRTARAG+ G +LL
Sbjct: 582 KFQNGSIDILICSDAMARGMDIDDVQYVISYDPPPYIKTYIHRVGRTARAGKEGTALSLL 641
Query: 440 HKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVY 476
K E FK + ++A + S +E L Y
Sbjct: 642 QKKEFHHFKTMTKEAGKTYIEKFKVHSKEMEGLLEKY 678
>gi|195495021|ref|XP_002095090.1| GE22191 [Drosophila yakuba]
gi|194181191|gb|EDW94802.1| GE22191 [Drosophila yakuba]
Length = 681
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 175/491 (35%), Positives = 250/491 (50%), Gaps = 66/491 (13%)
Query: 5 KKKSMPVLPWMRSPV-----DVSLFEDCP----LDHLPCLDPRLKVALQNMGISSLFPVQ 55
KK M + W+ P + E+ P +D L L+ AL+ M I LFPVQ
Sbjct: 105 KKVEMQLPNWLAHPTIIEGGSLQPEEEVPASEAIDQLDYLEKYTCQALKQMKIKRLFPVQ 164
Query: 56 VAV--W---QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110
V W + P RD+C+++PTGSGKTL++A+PIVQ LS R +RAL+VLP
Sbjct: 165 KQVIPWILEAQAKPPPFRPRDICVSAPTGSGKTLAFAIPIVQLLSQRVECKVRALIVLPV 224
Query: 111 RDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 170
+LALQV V +A+ L V L Q + DE +L+++ K G Y
Sbjct: 225 AELALQVYRVVSALCSKTELEVCLLSKQHKLEDEQEKLVEQYK---GKYY---------- 271
Query: 171 SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 230
S DI+V TPGRL++H++AT+GF L+ L +LV+DE DR++ +Q WL + + +
Sbjct: 272 SKADIVVTTPGRLVEHLHATKGFCLKSLTFLVIDEADRIMDAVFQNWLYHLDSHVKETTD 331
Query: 231 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 290
A T P + L++ F +P+ K++ SATL+QDP KL L L
Sbjct: 332 QLL--AGTQAPLCYAELQS--------SFGKQPH----KLLFSATLSQDPEKLQNLRLFQ 377
Query: 291 PLFLTTGET-------------------------RYKLPERLESYKLICESKLKPLYLVA 325
P TT T RY P L + E +LKPL + A
Sbjct: 378 PRLFTTVLTMPVLKDVTEGDADTEANTDPGQFVGRYTTPAELTEQYCVTELRLKPLTVYA 437
Query: 326 LLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 385
L++ ++ + FT+S + RL +L+ + K+ E SG +R TL+ F GK
Sbjct: 438 LVEKYQWKRFLCFTNSSDQASRLTFVLSLLFQNGTKVAELSGNLSAKIRKTTLRNFSAGK 497
Query: 386 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 445
I LV SDA+ RG+DV V+ V++Y+ P +I TYIHR GRTARAG+ G TLL ++
Sbjct: 498 INGLVCSDALARGIDVADVDVVLSYEIPRHITTYIHRVGRTARAGRKGTAVTLLTDKDMT 557
Query: 446 RFKKLLQKADN 456
FKK+L AD
Sbjct: 558 LFKKILSDADK 568
>gi|198425548|ref|XP_002130172.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 51
[Ciona intestinalis]
Length = 636
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 175/483 (36%), Positives = 251/483 (51%), Gaps = 68/483 (14%)
Query: 30 DHLPCLDPRLKVALQNMGISSLFPVQVAVW-------QETIGPGLFE-RDLCINSPTGSG 81
D P +D L L+++GI+ LFPVQ V Q +I LF RDLC+++PTGSG
Sbjct: 176 DIQPNIDQVLIQNLKDIGITQLFPVQQKVIPYILRDAQRSISHQLFPPRDLCVSAPTGSG 235
Query: 82 KTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLS-VGLAVGQSS 140
KT+++ALPIVQ L R V RALVV PTR+L+ Q+ VF ++ L + + + S
Sbjct: 236 KTIAFALPIVQALLQRVVPATRALVVSPTRELSAQIYKVFVSLCRNTQLKCILITAAKGS 295
Query: 141 IADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCY 200
+ E L+ K L DI+VATPGRL DH++ T F+L+ L +
Sbjct: 296 LLQEQRALLNFGK-------------TGLACPADIVVATPGRLADHLSQTSAFSLDKLRF 342
Query: 201 LVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK 260
LV+DE DR++ + +Q WL V Q + D+ LP +LK++ + +
Sbjct: 343 LVIDEADRMMEQIHQRWLTLVEQ-------KVYKDSFKPLPQHL-ALKSVTKNRIP---- 390
Query: 261 DKPYPRLVKMVLSATLTQDPNKLAQLDLHHP-LFLTTGET-----------------RYK 302
L K++ SATL+ DP KL QL+L P LF + +Y
Sbjct: 391 ------LQKLLFSATLSADPEKLQQLNLFQPRLFAAVVKPVQDNNMKCDVEENDFIGKYA 444
Query: 303 LPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHF----GEL 358
P+ LE Y + C + KPL + L+ L + + + F S+E+T +L L+ + G+
Sbjct: 445 TPDGLEQYMIHCTAGEKPLITLNLV--LNKTRVLCFAGSIETTRKLSMLIQMYADKEGKK 502
Query: 359 RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKT 418
E++ S R K LK F GKI VLV SD+M RG+DV V +V+ YD P IKT
Sbjct: 503 EFICTEFASHLPSSKRGKVLKDFISGKINVLVCSDSMARGLDVPCVEHVILYDVPPLIKT 562
Query: 419 YIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHS--IPSSLIESLRPVY 476
YIHR GRTARAG G +TLL K E+ FKK++ AD C + + IP + + +Y
Sbjct: 563 YIHRIGRTARAGATGTAYTLLRKQEIFHFKKMI--ADAGKCKVKTMKIPKESTQKMVSIY 620
Query: 477 KSV 479
+ V
Sbjct: 621 EQV 623
>gi|330793373|ref|XP_003284759.1| hypothetical protein DICPUDRAFT_148567 [Dictyostelium purpureum]
gi|325085359|gb|EGC38768.1| hypothetical protein DICPUDRAFT_148567 [Dictyostelium purpureum]
Length = 565
Score = 254 bits (649), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 161/434 (37%), Positives = 251/434 (57%), Gaps = 36/434 (8%)
Query: 43 LQNMGISSLFPVQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALPIVQTLSNRAV 99
L + ++ LFPVQ + I P + D+C+ +PTGSGKTL+YA+P+VQ + R V
Sbjct: 24 LNEISVTGLFPVQ-----QEIVPFISRAEGHDICVCAPTGSGKTLAYAIPLVQKIVKRVV 78
Query: 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 159
R +R +V++PT DL +QV+ F +I L V ++G E L+K
Sbjct: 79 RRIRVVVIVPTHDLVIQVEKTFQSIIKGTDLIVQ-SLGVKPFHVEQKLLVKNHSYGEHAL 137
Query: 160 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 219
Y +S VDI+V+TPGRL+DHIN T+GFTL++L YLV+DE DRLLR+++Q WL
Sbjct: 138 Y---------ESLVDIIVSTPGRLVDHINETQGFTLKYLNYLVIDEADRLLRQSFQDWLE 188
Query: 220 TVLQLTRSDNENRFSDASTFLP-SAFGSLKT-------IRRCGVERGFKDKPYPRLVKMV 271
V+ T + N + + + F+ + G+++ IR + +LVK++
Sbjct: 189 IVIDSTNNLNNDIGNSNNNFIKYNEKGNIEINELPINIIRDNNNQENHLCWSEFKLVKLL 248
Query: 272 LSATLTQDPNKLAQLDLHHPLFLTTGETR---YKLPERLESYKLICESKLKPLYLVAL-- 326
LSAT+T +P+K++ L L+ PLF TT +T+ Y +P L+ +I KPL L+ +
Sbjct: 249 LSATMTYNPSKISLLQLNAPLFFTTSKTKEIKYTMPSTLKESYIITNPDQKPLVLLNIIY 308
Query: 327 --LQSLGEEKCIVFTSSVESTHRLCTLLNHFG---ELRIKIKEYSGLQRQSVRSKTLKAF 381
L++ +K I FT SV+ THRL +LL G ++ +EYS + RS L F
Sbjct: 309 ETLKNDSNKKIICFTKSVDITHRLNSLLKLIGSVDNIKFTCEEYSSALSTTERSSLLNRF 368
Query: 382 REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK 441
+ +I VL+ SD M+RGMD+ ++ V+NY+ P I Y+HR GRTARAG+ G +T++ K
Sbjct: 369 KSNEINVLICSDIMSRGMDISDIDVVINYNSPPNITLYVHRVGRTARAGKHGFSYTIIDK 428
Query: 442 DEVKRFKKLLQKAD 455
E++ + +++KA+
Sbjct: 429 QEIRYYISMMKKAE 442
>gi|195376467|ref|XP_002047018.1| GJ12159 [Drosophila virilis]
gi|194154176|gb|EDW69360.1| GJ12159 [Drosophila virilis]
Length = 680
Score = 254 bits (649), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 170/458 (37%), Positives = 243/458 (53%), Gaps = 65/458 (14%)
Query: 29 LDHLPCLDPRLKVALQNMGISSLFPVQVAV--W--QETIGPGLFE-RDLCINSPTGSGKT 83
+ LP L+ L+ M I LFPVQ AV W + P F RD+C+++PTGSGKT
Sbjct: 145 IKQLPYLEKNTCSVLKQMKIKRLFPVQTAVIPWILEAQAKPEPFRPRDICVSAPTGSGKT 204
Query: 84 LSYALPIVQTLSNRAVRC-LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIA 142
L++A+PIVQ L+ R V+C +RALVVLP +LALQV VF A+ L V L Q +
Sbjct: 205 LAFAIPIVQLLAKR-VQCKVRALVVLPVAELALQVYKVFNALCSKTELEVCLLSKQHRLE 263
Query: 143 DEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLV 202
DE +L+++ K G+ Y S VDI+V TPGRL+DH++AT+GF L+ L +LV
Sbjct: 264 DEQEKLLEQYK---GVYY----------SKVDIVVTTPGRLVDHLHATKGFCLKSLQFLV 310
Query: 203 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVE--RGFK 260
+DE DR++ +Q WL + R+ + + L C E +
Sbjct: 311 IDEADRIMDAVFQNWLYHLDTHVRTTTDQLLTGVQAPL------------CYQELLNSYG 358
Query: 261 DKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET--------------------- 299
+P+ K++ SATL+QDP KL L L P TT T
Sbjct: 359 KQPH----KLLFSATLSQDPEKLQNLRLFQPKLFTTVLTMPALQLGLGNAEQPEQGVEQS 414
Query: 300 -----RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNH 354
+Y P L + E +LKPL L A++ G ++ + FT+S ++ +RL +L
Sbjct: 415 SQFIGKYTTPAELTEQYCLTEMRLKPLTLYAMVLLNGWKRFLCFTNSADTANRLAFVLQQ 474
Query: 355 -FGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP 413
FG +++E S ++R++ L F G I L+ SDA+ RG+DV V+ VV+Y+ P
Sbjct: 475 LFGGSPTRVEELSAKMSAAMRAQRLTEFARGSIHGLICSDALARGIDVPNVDIVVSYEAP 534
Query: 414 AYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLL 451
+IKTYIHR GRTARAG G TLL + +FKK+L
Sbjct: 535 RHIKTYIHRVGRTARAGHKGTAITLLTDKDQAQFKKML 572
>gi|340368286|ref|XP_003382683.1| PREDICTED: ATP-dependent RNA helicase DDX51-like [Amphimedon
queenslandica]
Length = 640
Score = 254 bits (649), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 165/456 (36%), Positives = 245/456 (53%), Gaps = 56/456 (12%)
Query: 34 CLDPRLKVALQNMGISSLFPVQVAVWQETI----GP------GLFERDLCINSPTGSGKT 83
L+P + L M ++SLFPVQ V E + GP G D+CI +PTG GKT
Sbjct: 168 ALNPIITDNLHKMSVTSLFPVQCVVLPELLSSSHGPLLSTVSGAPPSDMCICAPTGCGKT 227
Query: 84 LSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVG--QSSI 141
LSY +PIV +L NR R L+ALVV+P++DLALQV +VF +++ + +G AVG +S
Sbjct: 228 LSYVVPIVSSLLNRITRELKALVVVPSKDLALQVYNVFVSVSKGTRVRIG-AVGSQNTSF 286
Query: 142 ADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYL 201
+ E +LI + P AVD+LVATPGRL+ H+ T +L L YL
Sbjct: 287 SVEQKQLISH--------HGP---------AVDVLVATPGRLVRHLQETPFLSLASLRYL 329
Query: 202 VVDETDRLLREAYQAWLPTVLQLTRSDNENRFSD-ASTFLPSAFGSL-------KTIRRC 253
V+DE DR+ ++Y WL TV+ R + + +S+ +P + L ++
Sbjct: 330 VIDEADRIFEQSYHNWLNTVMDSIRETHSSGHCPLSSSCIPRMYPELWKPSFSKSLLKHK 389
Query: 254 GVE------RGFKDKPYPR---LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYK-- 302
G+ D YP L K++ SATL+ DP +L L L+ P T +
Sbjct: 390 GMHTDSQLSSSINDLIYPAAAPLQKLLFSATLSLDPEQLHLLQLYRPKLFTATPALQEDL 449
Query: 303 ----LPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGEL 358
LP L+ Y + C S KPL L+ L+ + + + FT S ESTHRL LL E
Sbjct: 450 GQSILPSTLKEYSISCSSDYKPLVLLHLILTFDHHRILCFTHSRESTHRLTLLLK---EY 506
Query: 359 RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKT 418
+ E SG Q +++ +K +I+ LV SD M RGMD+ G++ V+NYD P++ ++
Sbjct: 507 DAPVAEISGDLSQEKKNELIKKLTGKEIKALVCSDGMARGMDIPGIDCVINYDVPSHFRS 566
Query: 419 YIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 454
Y+HR GRTARAG G +TL +EV ++++++++A
Sbjct: 567 YLHRVGRTARAGAEGAAYTLNTFEEVHKWQRMIREA 602
>gi|440801982|gb|ELR22922.1| DEAD/DEAH box helicase domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 689
Score = 254 bits (649), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 168/435 (38%), Positives = 233/435 (53%), Gaps = 71/435 (16%)
Query: 31 HLPCLDPRLKVAL-QNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALP 89
H+ L P + L Q GI+ FP+Q V +P
Sbjct: 249 HVKGLHPTIVQNLEQQFGIAQFFPIQAQV-----------------------------IP 279
Query: 90 IV--QTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISE 147
++ TL NR V LRALV+LP RDLALQVK VF + L V + VGQSS + +
Sbjct: 280 VILRSTLLNRVVVRLRALVILPNRDLALQVKSVFDLLCEGTDLKVEIVVGQSSFRKDQEK 339
Query: 148 LIK--------------RPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193
L++ + EAG P L+EL VDIL+ TPGRLMD +N TRGF
Sbjct: 340 LVQGEEGPDAADLRGASTSEAEAGDRSAP--ALKEL---VDILICTPGRLMDLLNQTRGF 394
Query: 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRF------SDASTFL---PSAF 244
TL+HL +LV+DE DRLL +++Q WL VLQ T S + R +D L
Sbjct: 395 TLQHLRFLVIDEADRLLDQSFQDWLNKVLQATHSSTQGRVYGCVDETDQEAHLRIDARTM 454
Query: 245 GSLKTIR-----RCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET 299
L ++R + ++P P L K++ SATLT +P K+A L L++P F + T
Sbjct: 455 RQLTSVRSVHLSSTALHSIIPEEPEP-LHKLLFSATLTNNPKKIAALRLNNPHFFSATST 513
Query: 300 R-YKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGEL 358
YK+PE+L+ Y +IC KPL L+ LL+ ++ + FTSSVESTHRL LL G+
Sbjct: 514 GLYKMPEKLQEYMVICSLAYKPLVLLYLLEMFDFKRTLCFTSSVESTHRLYLLLTLMGQ- 572
Query: 359 RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKT 418
+ EYS Q R++ ++ F +G I+++++SDAM+RG+D+E V NV+NYD P +IKT
Sbjct: 573 -TGVAEYSSTLPQRKRTQIIEKFAKGDIKIVIASDAMSRGLDIEDVENVINYDVPPFIKT 631
Query: 419 YIHRAGRTAR--AGQ 431
Y+HR A AGQ
Sbjct: 632 YVHRGPNCASRPAGQ 646
>gi|66800335|ref|XP_629093.1| hypothetical protein DDB_G0293740 [Dictyostelium discoideum AX4]
gi|74896742|sp|Q54BD6.1|DDX51_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx51; AltName:
Full=DEAD box protein 51
gi|60462461|gb|EAL60682.1| hypothetical protein DDB_G0293740 [Dictyostelium discoideum AX4]
Length = 563
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 165/441 (37%), Positives = 249/441 (56%), Gaps = 46/441 (10%)
Query: 43 LQNMGISSLFPVQ---VAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV 99
L+ I +LFPVQ V T G D+C+ +PTGSGKTL+YA+P+VQ + R V
Sbjct: 30 LKEQSIINLFPVQQEIVPFINRTEG-----HDICVCAPTGSGKTLAYAIPLVQKIVKRVV 84
Query: 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 159
R +R V++PT DL +QV+ F +I L V L++G E LIK
Sbjct: 85 RRVRVAVIVPTHDLVIQVEKTFQSIIKGTDLVV-LSLGVKPFHIEQKLLIKNHSYGEHAL 143
Query: 160 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 219
Y +S VDI+V+TPGR++DHIN T GFTL++L YLV+DE DRLLR+++Q WL
Sbjct: 144 Y---------ESLVDIIVSTPGRIVDHINETLGFTLKYLNYLVIDEADRLLRQSFQDWLE 194
Query: 220 TVLQLTRSDNE-NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYP---------RLVK 269
V+ T ++ N+ + ++ G ++ + KD +LVK
Sbjct: 195 IVIDSTNQHSDLNQQQEEQLIKYNSKGDIELFEKS---ISLKDNNNQMNHLCWSEFKLVK 251
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETR---YKLPERLESYKLICESKLKPLYLVAL 326
++LSAT+T +P+K++ L L+ PLF TT +T+ Y +P L+ +I KPL L+ +
Sbjct: 252 LLLSATMTYNPSKISLLQLNAPLFFTTSKTKEIKYSMPSTLKECYIISNGDQKPLVLLNI 311
Query: 327 L-QSL--------GEEKCIVFTSSVESTHRLCTLLNHFGE---LRIKIKEYSGLQRQSVR 374
+ +SL ++K I FT SV+ THRL TLL G+ L+ +EYS R
Sbjct: 312 IYESLLKNNANGENKKKIICFTKSVDITHRLNTLLKLIGQVDKLKFTCEEYSSSLSTVER 371
Query: 375 SKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 434
+ L F+ +I +L+ SD M+RGMD++ ++ V+NY+ P I Y+HR GRTARAG G
Sbjct: 372 ADLLSRFKLNQIDILICSDIMSRGMDIQDIDVVINYNTPPNITLYVHRVGRTARAGNFGV 431
Query: 435 CFTLLHKDEVKRFKKLLQKAD 455
+T++ K E+K + +++KA+
Sbjct: 432 SYTIVDKSEIKYYISMMKKAE 452
>gi|325188363|emb|CCA22900.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
Length = 496
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 163/431 (37%), Positives = 242/431 (56%), Gaps = 50/431 (11%)
Query: 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGL 130
D CI++PTGSGKT +Y +PI+ L R + LRAL+V+PTRDLA QV V + + L
Sbjct: 61 DFCISAPTGSGKTFTYLIPILLQLQQRIICRLRALIVVPTRDLATQVHQVASVLCGGTKL 120
Query: 131 SVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT 190
+ GQ++ E + +L + S +DIL+ATPGRL+DH+ T
Sbjct: 121 KCAVVTGQANFGQE------------------QRLLSDTHSGIDILIATPGRLVDHLEQT 162
Query: 191 RGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTI 250
GFTL+HL +L+VDE DRLL ++YQ W+ V Q + +S S +L I
Sbjct: 163 NGFTLQHLQFLIVDEADRLLTQSYQDWIAKVYQ-------SVYSTVSAVPLRPEDNLVAI 215
Query: 251 RRCGVERGFKDKPYPRL--VKMVLSATLTQDPNKLAQLDLHHPLFL----TTGE------ 298
R G ++ R+ ++++LSATLT++P+KLA + +H+ L + GE
Sbjct: 216 RTIRTANGIQNHKQIRVPFIRVLLSATLTENPSKLALIGMHYARVLKIKGSEGEDSMPKA 275
Query: 299 ---------TRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLC 349
+ Y+ PE+LE + + C+S KPL L+ LL + ++ ++FTSSV +THRL
Sbjct: 276 QTECELDADSVYETPEKLEEWMIECDSDSKPLRLIQLLLTFKDQMTLIFTSSVNATHRLT 335
Query: 350 TLLN----HFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN 405
LL + + ++EYS R + ++G ++LV SDAM RGMD++ V
Sbjct: 336 RLLQLVFKEHSDDDVGVQEYSSSLTLQQRRTLVAKCKKGLYRILVCSDAMARGMDLDDVV 395
Query: 406 NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIP 465
NV+NYD P++IKTYIHRAGR ARAG+ GRC TL+ + + K +++LQKA +P
Sbjct: 396 NVINYDVPSFIKTYIHRAGRAARAGRFGRCVTLVKRGQTKGLQRMLQKAKKKKLLAFPLP 455
Query: 466 SSLIESLRPVY 476
I+ L PVY
Sbjct: 456 PEEIQQLVPVY 466
>gi|401883807|gb|EJT47994.1| ATP-dependent RNA helicase [Trichosporon asahii var. asahii CBS
2479]
Length = 743
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 174/451 (38%), Positives = 245/451 (54%), Gaps = 51/451 (11%)
Query: 27 CPLDHLPCLDP---RLKVALQNMGISSLFPVQVAVWQETIGPGL----FER--DLCINSP 77
PL L P R + L+++GIS F VQ A+ + + L FE+ D +++P
Sbjct: 286 MPLSELTETTPISERTQKRLKDLGISEFFAVQTALLPKLLRLPLTPLPFEKLSDYLVSAP 345
Query: 78 TGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVG 137
TGSGKTL+Y +PIV+ LS R V LRAL+VLPTRDL QVK+ ++ GL+ A
Sbjct: 346 TGSGKTLAYTVPIVEILSKRIVTRLRALIVLPTRDLVTQVKETLEEVSKGSGLTHSFAHE 405
Query: 138 QSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEH 197
Q+ + D QS +DIL+ATPGRLMDH+ T+GFTL+H
Sbjct: 406 QTLLVDGA------------------------QSKLDILIATPGRLMDHLAMTKGFTLQH 441
Query: 198 LCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVER 257
L +LV+DE DRLL ++Q WL VL R ++ ++ S +L G+ R
Sbjct: 442 LRFLVIDEADRLLSSSFQNWLSQVLDQCRP---HKHANGEELAGSQV-ALAWSEPMGLSR 497
Query: 258 G-FKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR--------YKLPERLE 308
G F+ K++ SATLT+DP K+AQL+L P + TR ++LP L
Sbjct: 498 GDFEGSQVIPSSKLLFSATLTRDPAKVAQLNLTSPEYYIVSSTRSITQIGQAFELPSSLT 557
Query: 309 SYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHF-----GELRIKIK 363
+I +LKPL L+ LL S G IVFT SV++ RL LL +F G ++ +
Sbjct: 558 ERSIILPPQLKPLNLLYLLHSEGAAPSIVFTKSVDAASRLVRLLTYFEQAYIGGKKLSVA 617
Query: 364 EYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRA 423
++ + S R L F GK+ VLV SD ++RG+D+ V +VV+YD P + Y+HRA
Sbjct: 618 SFTRDMKPSERKTMLSDFAAGKLDVLVCSDLISRGIDLPSVAHVVSYDVPLDMTKYVHRA 677
Query: 424 GRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 454
GRTARAG+ G +T++ K E K FK +L A
Sbjct: 678 GRTARAGRDGTVWTMVEKQEAKHFKDMLAAA 708
>gi|403159589|ref|XP_003320191.2| hypothetical protein PGTG_01103 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375168160|gb|EFP75772.2| hypothetical protein PGTG_01103 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 893
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 178/520 (34%), Positives = 251/520 (48%), Gaps = 128/520 (24%)
Query: 43 LQNMGISSLFPVQVAV----------WQETIGPGLFE-----RDLCINSPTGSGKTLSYA 87
L+ + +L VQ+AV + T L+ RDLC+++PTGSGKTLSY
Sbjct: 346 LKQLEFENLLAVQIAVFSLLMPPLSAYSNTPASSLYPTRRPPRDLCVSAPTGSGKTLSYI 405
Query: 88 LPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISE 147
+PIV+TLS+R V LRAL+VLPTRDL LQVK+ F + GL + GQ S E ++
Sbjct: 406 VPIVETLSSRVVCRLRALIVLPTRDLVLQVKNTFDCFSKGTGLKAAIITGQHSFTKEQAQ 465
Query: 148 LIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 207
L G D L+ +VD+L+ATPGRL+DH+N T GF+L+HLC+LV+DE D
Sbjct: 466 L--------GCSRD------GLEGSVDVLIATPGRLVDHLNHTSGFSLQHLCFLVLDEAD 511
Query: 208 RLLREAYQAWLPTVLQLTRSDNENR--------------------FSDASTFLPSAF--G 245
+LL ++ QAWL VL + + + F + F PS G
Sbjct: 512 QLLNKS-QAWLHQVLSTSAASEVPKPMEHTEPIKSSFNHPKSLLGFRSSEPFEPSHLLDG 570
Query: 246 SLKTIRRCGVERGFKD------------KPYPRLVKMVLSATLTQDPNKLAQLDLHHPLF 293
L T+ + G + +P+ R+ ++ SATL +DP KLA L L HP+F
Sbjct: 571 PLSTVEMHNQDHGLTENLPIETYNPCRLRPF-RI--LLFSATLRRDPVKLAHLGLRHPVF 627
Query: 294 LTTG-------------ETR--------------YKLPERLESYKLICESKLKPLYLVAL 326
+ +TR Y LP+ L+ Y ++ + LKPL L
Sbjct: 628 VKISSSSTTLVVDGDLDQTRRESGTIDFVDQLNGYCLPKTLKQYLIVTRTDLKPLVFFKL 687
Query: 327 LQSLGEEKCIVFTSSVESTHR---LCTLL-NHFGELR----------------------- 359
LQS EK + F S++ R LC L+ F L+
Sbjct: 688 LQSQRIEKALCFCKSIDGARRLTGLCRLMAEQFQALKSPNSDDPESNPKQKDQDQKDQKD 747
Query: 360 -------IKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 412
K++ +S R K L F+ G+I +L+ SD + RG+D+ GV NV+NYD
Sbjct: 748 DVDLVKLCKVECFSSDLSPVERKKLLNKFQSGEINMLICSDIIARGIDITGVQNVINYDS 807
Query: 413 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 452
P IK Y+HR GRTARA + GR F+L+ E K K L+
Sbjct: 808 PIDIKKYVHRVGRTARANEHGRAFSLVESQEAKFVKAFLK 847
>gi|328867619|gb|EGG16001.1| putative RNA helicase [Dictyostelium fasciculatum]
Length = 506
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 161/428 (37%), Positives = 231/428 (53%), Gaps = 43/428 (10%)
Query: 43 LQNMGISSLFPVQ---VAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV 99
L I L PVQ V T G D+ + +PTGSGKTLSY LPIVQ L R +
Sbjct: 16 LNEQNIVDLMPVQSEIVPFIARTEG-----HDILVAAPTGSGKTLSYVLPIVQKLHKRII 70
Query: 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 159
R LR LV+LPT DL +Q + F +I L V ++G S+ E S L+
Sbjct: 71 RRLRVLVILPTHDLVIQTEKTFQSIIKGTNLVVE-SLGLKSLHLEQSLLVSS-------H 122
Query: 160 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 219
Y+ ++ +S VDI+V TPGRL++H+N T GF L+HL YLV+DE DRLLRE+YQ WL
Sbjct: 123 YNQQNDSVYYESLVDIVVTTPGRLVEHLNETPGFNLQHLTYLVIDEADRLLRESYQFWLE 182
Query: 220 TVLQLTRSDNENRFSDAST-----FLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274
V+ T+S +R + S L S + SL G RL+K++LSA
Sbjct: 183 RVIDSTKSGTNDRSINLSNRGDMQILDSKYKSL------GSHLEHLSSKESRLIKLLLSA 236
Query: 275 TLTQDPNKLAQLDLHHPLFLTT-----GETRYKLPERLESYKLICESKLKPLYLVALLQS 329
T+T +P K++ L+L+ PL+ ++ T+Y +P+ L+ Y + C + KPL L+ ++ S
Sbjct: 237 TMTYNPEKISLLELNAPLYYSSTKKKESSTKYSMPDSLQEYYVACPASQKPLSLIHIVYS 296
Query: 330 L------GEEKCIVFTSSVESTHRLCTLL---NHFGELRIKIKEYSGLQRQSVRSKTLKA 380
+ + I FT++ E RL TL+ N IK YS RS L++
Sbjct: 297 ILLKKKSDNARIICFTNNKEIAQRLHTLIGLVNEINGYNIKPALYSSTVSTIERSHLLES 356
Query: 381 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 440
+ I +L+ SD ++RGMDV V+ V+NY+ P Y+HR GRTARAG+ G +T++
Sbjct: 357 LKNNHINLLICSDILSRGMDVPNVDAVINYNLPLTAVLYVHRVGRTARAGKEGEAYTIV- 415
Query: 441 KDEVKRFK 448
D V + K
Sbjct: 416 -DTVDKSK 422
>gi|406696286|gb|EKC99578.1| ATP-dependent RNA helicase [Trichosporon asahii var. asahii CBS
8904]
Length = 743
Score = 252 bits (643), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 174/451 (38%), Positives = 243/451 (53%), Gaps = 51/451 (11%)
Query: 27 CPLDHLPCLDP---RLKVALQNMGISSLFPVQVAVWQETIGPGL----FER--DLCINSP 77
PL L P R + L+++GIS F VQ A+ + + L FE+ D +++P
Sbjct: 286 MPLSELTETTPISERTQKRLKDLGISEFFAVQTALLPKLLRLPLTPLPFEKLSDYLVSAP 345
Query: 78 TGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVG 137
TGSGKTL+Y +PIV+ LS R V LRAL+VLPTRDL QVK+ ++ GL+ A
Sbjct: 346 TGSGKTLAYTVPIVEILSKRIVTRLRALIVLPTRDLVTQVKETLEEVSKGSGLTHSFAHE 405
Query: 138 QSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEH 197
Q+ + D QS +DIL+ATPGRLMDH+ T+GFTL+H
Sbjct: 406 QTLLVDGA------------------------QSKLDILIATPGRLMDHLAMTKGFTLQH 441
Query: 198 LCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVER 257
L +LV+DE DRLL ++Q WL VL R + L + +L G+ R
Sbjct: 442 LRFLVIDEADRLLSSSFQNWLSQVLDQCRPHKPANGEE----LAGSQVALAWSEPMGLSR 497
Query: 258 G-FKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR--------YKLPERLE 308
G F+ K++ SATLT+DP K+AQL+L P + TR ++LP L
Sbjct: 498 GDFEGSQVIPSSKLLFSATLTRDPAKVAQLNLTSPEYYIVSSTRSITQIGQAFELPSSLT 557
Query: 309 SYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHF-----GELRIKIK 363
+I +LKPL L+ LL S G IVFT SV++ RL LL +F G ++ +
Sbjct: 558 ERSIILPPQLKPLNLLYLLHSEGAAPSIVFTKSVDAASRLVRLLTYFEQAYIGGKKLSVA 617
Query: 364 EYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRA 423
++ + S R L F GK+ VLV SD ++RG+D+ V +VV+YD P + Y+HRA
Sbjct: 618 SFTRDMKPSERKTMLSDFAVGKLDVLVCSDLISRGIDLPSVAHVVSYDVPLDMTKYVHRA 677
Query: 424 GRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 454
GRTARAG+ G +T++ K E K FK +L A
Sbjct: 678 GRTARAGRDGTVWTMVEKQEAKHFKDMLAAA 708
>gi|320169870|gb|EFW46769.1| DEAD-box ATP-dependent RNA helicase 1 [Capsaspora owczarzaki ATCC
30864]
Length = 866
Score = 252 bits (643), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 200/581 (34%), Positives = 273/581 (46%), Gaps = 140/581 (24%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPG---LFERDLCINSPTGSGKTLSYALPIV 91
LDPR+ AL MGI SLFPVQ ++ E +G + DLC++SPTGSGKT+++A+PIV
Sbjct: 266 LDPRVVRALTKMGIQSLFPVQASLLPEILGSASSAVHPGDLCVSSPTGSGKTMAFAIPIV 325
Query: 92 QTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
LS R V LRAL++ PTR+LA QVK VF ++A L+ L GQ S+A E +L+
Sbjct: 326 NKLSTRVVPRLRALILQPTRELAAQVKSVFDSLAQFTPLTTALITGQLSLAAE-QDLLAA 384
Query: 152 PKLEAGICYDPEDVLQELQSA-----------VDILVATPGRLMDHINATRGFTLEHLCY 200
+ D L +S+ D++VATPGRL+DH+N L+HL Y
Sbjct: 385 GAPSRSVLADSVLALAGNRSSGSAQQATPIVLCDVVVATPGRLVDHLNCNPAL-LDHLEY 443
Query: 201 LVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSA--FGSLKTIRRCGVERG 258
LV+DE DRLL ++Y WLP VL R+ R + S+ SA G + G
Sbjct: 444 LVLDEADRLLSQSYSDWLPRVL-AGRTTRHQRAAAQSSNNASATLAGESGGVGSAGYGMV 502
Query: 259 FKDKPYPRLVKMVLSATLTQDPNKLAQL-------------------------------- 286
+ + K++ SATLT +P K+A L
Sbjct: 503 NNSSSHSIMRKLLFSATLTNNPEKIAALHLVFPRYFVAAPNATLSVKPVAGAGADAATAM 562
Query: 287 ----DLHHPLFLTTGET--RYKLPERLESYKLICESKLKPLYLV-----ALLQSLG---- 331
D PLF G+ R+ LP L ++C+ KPL L L+++ G
Sbjct: 563 DTTADGQEPLFDADGDNAARFTLPATLTQEMIVCQLADKPLALAQRLYGTLIRAAGKTLP 622
Query: 332 --EEKC-------IVF-------------------------------------TSSVEST 345
+E +VF T+SVEST
Sbjct: 623 ADDEAAATTTPHRVVFASDDEEDADPSNEEASAKKRGTPLSRAIKALPQALVFTASVEST 682
Query: 346 HRLCTLL-----NHFGELR-IK----IKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 395
HRL LL ELR I+ + E+S + R K L FR ++ VL+ SDAM
Sbjct: 683 HRLALLLRNLLKQALPELRDIQLGSLVAEFSSSLSKDDRGKMLNRFRTNQVHVLICSDAM 742
Query: 396 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 455
RGMD+E V V+NYD P Y KTY+HR GRTARAG+ G+ TLL +EV FK++L KA
Sbjct: 743 ARGMDIENVAEVINYDVPVYFKTYVHRVGRTARAGRSGQALTLLRSEEVAAFKRMLGKAG 802
Query: 456 NDSCPIHSIPSSL------------IESLRPVYKSVRGGIS 484
HS+P+ + +ESLR + +GG S
Sbjct: 803 ------HSLPAKIRGDSAAHFANEALESLRAAIEKEKGGKS 837
>gi|17136666|ref|NP_476833.1| dead box protein 73D [Drosophila melanogaster]
gi|12644178|sp|P26802.3|DDX51_DROME RecName: Full=Probable ATP-dependent RNA helicase Dbp73D;
Short=DEAD box protein 73D
gi|4972732|gb|AAD34761.1| unknown [Drosophila melanogaster]
gi|7294064|gb|AAF49419.1| dead box protein 73D [Drosophila melanogaster]
gi|33589494|gb|AAQ22514.1| LD27814p [Drosophila melanogaster]
Length = 687
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 188/540 (34%), Positives = 264/540 (48%), Gaps = 72/540 (13%)
Query: 5 KKKSMPVLP-WMRSPV-----DVSLFEDCP----LDHLPCLDPRLKVALQNMGISSLFPV 54
KKK LP W+ P + E+ P +D L L+ AL+ M I LFPV
Sbjct: 104 KKKVQMQLPNWLAHPTIIEGGSLQPEEEVPASEAIDQLDYLEKYTCQALKQMKIKRLFPV 163
Query: 55 QVAV--W---QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109
Q V W P RD+C+++PTGSGKTL++A+PIVQ LS R +RALVVLP
Sbjct: 164 QKQVIPWILEAHAKPPPFRPRDICVSAPTGSGKTLAFAIPIVQLLSQRVDCKVRALVVLP 223
Query: 110 TRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL 169
+LALQV V + + L V L Q + DE +L+++ K G Y
Sbjct: 224 VAELALQVYRVISELCSKTELEVCLLSKQHKLEDEQEKLVEQYK---GKYY--------- 271
Query: 170 QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDN 229
S DI+V TPGRL+DH++AT+GF L+ L +LV+DE DR++ +Q WL + +
Sbjct: 272 -SKADIVVTTPGRLVDHLHATKGFCLKSLKFLVIDEADRIMDAVFQNWLYHLDSHVKETT 330
Query: 230 ENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH 289
+ A T P + L+ F +P+ K++ SATL+QDP KL L L
Sbjct: 331 DQLL--AGTQAPLCYAELQA--------SFGKQPH----KLLFSATLSQDPEKLQDLRLF 376
Query: 290 HPLFLTTGET-------------------------RYKLPERLESYKLICESKLKPLYLV 324
P T T RY P L + E +LKPL +
Sbjct: 377 QPRLFATVLTMPVLKDATEEGADTEALTDPGQFVGRYTTPAELTEQYCVTELRLKPLTVF 436
Query: 325 ALLQSLGEEKCIVFTSSVESTHRLCTLLN-HFGELRIKIKEYSGLQRQSVRSKTLKAFRE 383
AL++ ++ + FT+S + RL +L F + K+ E SG VR++ L+ F
Sbjct: 437 ALVEKYKWKRFLCFTNSSDQATRLTFVLKVLFQKYSTKVSELSGNLSAKVRNERLRDFAA 496
Query: 384 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443
GKI L+ SDA+ RG+DV V+ V++Y+ P +I TYIHR GRTARAG+ G T+L + +
Sbjct: 497 GKINGLICSDALARGIDVADVDVVLSYETPRHITTYIHRVGRTARAGRKGTAVTVLTEQD 556
Query: 444 VKRFKKLLQKADND-SCPIHSIPSSLIESLRPV-YKSVRGGISDEAFWKVGCDLHGVNRV 501
+ FKK+L A+ IH P IE V YK G+ E + NRV
Sbjct: 557 MTLFKKILSDANKGLGEEIHVSPD--IEIQHAVEYKEALAGLRSEKVKNKNQKMAEKNRV 614
>gi|198463449|ref|XP_001352828.2| GA21960 [Drosophila pseudoobscura pseudoobscura]
gi|198151259|gb|EAL30329.2| GA21960 [Drosophila pseudoobscura pseudoobscura]
Length = 697
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 184/493 (37%), Positives = 254/493 (51%), Gaps = 75/493 (15%)
Query: 5 KKKSMPVLP-WMRSPVDV---SLFED---------CPLDHLPCLDPRLKVALQNMGISSL 51
+KK VLP W+ P + SL D +++L L + AL+ M I L
Sbjct: 106 RKKVTEVLPPWLAYPTIIEGGSLLPDDDLEAGKDEASIENLSYLKDHTRQALKQMKIKRL 165
Query: 52 FPVQVAV--W----QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC-LRA 104
FPVQ V W Q P L RD+C+++PTGSGKTL++A+PIVQ L+NR VRC +RA
Sbjct: 166 FPVQRTVIPWILEAQGQPAP-LRPRDICVSAPTGSGKTLAFAIPIVQLLNNR-VRCKVRA 223
Query: 105 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 164
LVVLP +LALQV V A+ L V L Q + DE +L++ K G Y
Sbjct: 224 LVVLPVAELALQVFKVIRALCSKTELEVCLLSKQHRLEDEQEKLVEVYK---GQIY---- 276
Query: 165 VLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224
S DI+V TPGRL+DH++AT+GF L+ L +LV+DE DR++ +Q WL +
Sbjct: 277 ------SKADIVVTTPGRLVDHLHATKGFCLKSLKFLVIDEADRIMDAFFQNWLYHLDNH 330
Query: 225 TRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 284
R A T P L + P+ K++ SAT++QDP KL
Sbjct: 331 VRETANQLL--AGTQPPLCLKELYAT--------YGKVPH----KLLFSATMSQDPEKLQ 376
Query: 285 QLDLHHPLFLTT----------------GET---------RYKLPERLESYKLICESKLK 319
L L P TT ET +Y P L + E ++K
Sbjct: 377 NLRLFQPKLFTTVFALPVPKSDEQADGDEETTPNTGHFAGKYTTPVELTEQFCVTELRIK 436
Query: 320 PLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNH-FGELRIKIKEYSGLQRQSVRSKTL 378
PL L AL++ ++ + FT+S E+ +RL ++ F K+ E SG VR+KTL
Sbjct: 437 PLTLFALVEKYQWKRFLCFTNSTETANRLAFVMGKLFSTGPTKVAELSGKLSALVRTKTL 496
Query: 379 KAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 438
F G+I L+ SDA+ RG+DV V+ V++Y+ P +IKTYIHR GRTARAG+ G TL
Sbjct: 497 SDFARGRINGLICSDALARGIDVADVDVVLSYETPRHIKTYIHRVGRTARAGRKGTAVTL 556
Query: 439 LHKDEVKRFKKLL 451
L + E +FKK+L
Sbjct: 557 LTEQEQAQFKKML 569
>gi|194872386|ref|XP_001973017.1| GG15853 [Drosophila erecta]
gi|190654800|gb|EDV52043.1| GG15853 [Drosophila erecta]
Length = 687
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 173/493 (35%), Positives = 248/493 (50%), Gaps = 67/493 (13%)
Query: 5 KKKSMPVLPWMRSPVDVSLFEDCPLDHLPC---------LDPRLKVALQNMGISSLFPVQ 55
KK M + W+ P + P D +P L+ AL+ M I LFPVQ
Sbjct: 105 KKVEMQLPNWLAHPTIIEGGSLQPEDEIPASEAIDQLDYLEKYTCEALKQMKIKRLFPVQ 164
Query: 56 VAV--W---QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110
V W P RD+C+++PTGSGKTL++A+PIVQ LS R +RAL+VLP
Sbjct: 165 KQVIPWILEAHAKPPPFRPRDICVSAPTGSGKTLAFAIPIVQLLSQRVECKVRALIVLPV 224
Query: 111 RDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 170
+LALQV V + + L V L Q + DE +++++ K G Y
Sbjct: 225 AELALQVYRVISKLCSKTELEVCLLSKQHKLEDEQEKVVEQYK---GKYY---------- 271
Query: 171 SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 230
S DI+V TPGRL++H++AT+GF L+ L +LV+DE DR++ +Q WL + + +
Sbjct: 272 SKADIVVTTPGRLVEHLHATKGFCLKSLKFLVIDEADRIMDAVFQNWLYHLDSHVKETTD 331
Query: 231 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 290
A T P + L++ F +P+ K++ SATL+QDP KL L L
Sbjct: 332 QLL--AGTQAPLCYAELQS--------SFGKQPH----KLLFSATLSQDPEKLQNLRLFQ 377
Query: 291 PLFLTT------------GET-------------RYKLPERLESYKLICESKLKPLYLVA 325
P TT GE RY P L + E +LKPL + A
Sbjct: 378 PRLFTTVLTMPVLKDITEGEADTEAHTDPGQFVGRYTTPAELTEQYCVTELRLKPLTVFA 437
Query: 326 LLQSLGEEKCIVFTSSVESTHRLCTLLN-HFGELRIKIKEYSGLQRQSVRSKTLKAFREG 384
L++ ++ + FT+S + RL +L F + + E SG VR + LK F G
Sbjct: 438 LVEKYKWKRFLCFTNSSDQASRLTFVLKVLFKKYSTIVSELSGNLSARVRKEKLKDFSAG 497
Query: 385 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444
KI L+ SDA+ RG+DV V+ V++Y+ P +I TYIHR GRTARAG+ G TLL + ++
Sbjct: 498 KINGLICSDALARGIDVADVDVVLSYETPRHITTYIHRVGRTARAGRKGTAVTLLTEQDM 557
Query: 445 KRFKKLLQKADND 457
FKK+L AD +
Sbjct: 558 ALFKKILSDADKE 570
>gi|195590910|ref|XP_002085187.1| GD12444 [Drosophila simulans]
gi|194197196|gb|EDX10772.1| GD12444 [Drosophila simulans]
Length = 687
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 186/539 (34%), Positives = 264/539 (48%), Gaps = 71/539 (13%)
Query: 5 KKKSMPVLPWMRSPV-----DVSLFEDCP----LDHLPCLDPRLKVALQNMGISSLFPVQ 55
KK +M + W+ P + E+ P +D L L+ AL+ M I LFPVQ
Sbjct: 105 KKVNMQLPNWLAHPTIIEGGSLQPEEEVPASEAIDQLDYLEKYTCQALKQMKIKRLFPVQ 164
Query: 56 VAV--W---QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110
V W P RD+C+++PTGSGKTL++A+PIVQ LS R +RALVVLP
Sbjct: 165 KQVIPWILEAHAKPPPFRPRDICVSAPTGSGKTLAFAIPIVQLLSQRVDCKVRALVVLPV 224
Query: 111 RDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 170
+LALQV V +A+ L L Q + DE +L+++ K G Y
Sbjct: 225 AELALQVYRVISALCSKTDLEACLLSKQHKLEDEQEKLVEQYK---GKYY---------- 271
Query: 171 SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 230
S DI+V TPGRL++H++AT+GF L+ L +L++DE DR++ +Q WL + + +
Sbjct: 272 SKADIVVTTPGRLVEHLHATKGFCLKSLKFLIIDEADRIMDAVFQNWLYHLDSHVKETTD 331
Query: 231 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 290
A T P + L+ F +P+ K++ SATL+QDP KL L L
Sbjct: 332 QLL--AGTQAPLCYAELQA--------SFGKQPH----KLLFSATLSQDPEKLQDLRLFQ 377
Query: 291 PLFLTTGET-------------------------RYKLPERLESYKLICESKLKPLYLVA 325
P T T RY P L + E +LKPL + A
Sbjct: 378 PRLFATVLTMPVLKDATEEGSDTEALTDPGQFVGRYTTPAELTEQYCVTELRLKPLTVFA 437
Query: 326 LLQSLGEEKCIVFTSSVESTHRLCTLLN-HFGELRIKIKEYSGLQRQSVRSKTLKAFREG 384
L++ ++ + FT+S + RL +L F + K+ E SG VR + L+ F G
Sbjct: 438 LVEKYKWKRFLCFTNSSDQASRLTFVLEVLFQKYNTKVSELSGNLSAKVRKERLRDFAAG 497
Query: 385 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444
KI L+ SDA+ RG+DV V+ V++Y+ P +I TYIHR GRTARAG+ G TLL + ++
Sbjct: 498 KINGLICSDALARGIDVADVDVVLSYEIPRHITTYIHRVGRTARAGRKGTAVTLLTEYDM 557
Query: 445 KRFKKLLQKADND-SCPIHSIPSSLIESLRPV-YKSVRGGISDEAFWKVGCDLHGVNRV 501
FKK+L A+ IH P IE V YK G+ E K + NRV
Sbjct: 558 TLFKKILSDANKGLGEEIHVSPD--IEIQHAVEYKEALAGLRTEKEKKKNQKMAEKNRV 614
>gi|195328224|ref|XP_002030816.1| GM24369 [Drosophila sechellia]
gi|194119759|gb|EDW41802.1| GM24369 [Drosophila sechellia]
Length = 687
Score = 248 bits (633), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 186/539 (34%), Positives = 263/539 (48%), Gaps = 71/539 (13%)
Query: 5 KKKSMPVLPWMRSPV-----DVSLFEDCP----LDHLPCLDPRLKVALQNMGISSLFPVQ 55
KK +M + W+ P + E+ P +D L L+ AL+ M I LFPVQ
Sbjct: 105 KKVNMQLPNWLAHPTIIEGGSLQPEEEVPTSEAIDQLDYLEKYTCQALKQMKIKRLFPVQ 164
Query: 56 VAV--W---QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110
V W P RD+C+++PTGSGKTL++A+PIVQ LS R +RALVVLP
Sbjct: 165 KQVIPWILEAHAKPPPFRPRDICVSAPTGSGKTLAFAIPIVQLLSQRVDCKVRALVVLPV 224
Query: 111 RDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 170
+LALQV V +A+ L L Q + DE +L+++ K G Y
Sbjct: 225 AELALQVYRVISALCSKTDLEACLLSKQHKLEDEQEKLVEQYK---GKYY---------- 271
Query: 171 SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 230
S DI+V TPGRL+DH++AT+GF L+ L +L++DE DR++ +Q WL + + +
Sbjct: 272 SKADIVVTTPGRLVDHLHATKGFCLKSLKFLIIDEADRIMDAVFQNWLYHLDSHVKETTD 331
Query: 231 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 290
A T P + L+ F +P+ K++ SATL+QDP KL L L
Sbjct: 332 QLL--AGTQAPLCYAELQA--------SFGKQPH----KLLFSATLSQDPEKLQDLRLFQ 377
Query: 291 PLFLTTGET-------------------------RYKLPERLESYKLICESKLKPLYLVA 325
P T T RY P L + E +LKPL + A
Sbjct: 378 PRLFATVLTMPVLKDATEEGSDTEALTDPGQFVGRYTTPAELTEQYCVTELRLKPLTVFA 437
Query: 326 LLQSLGEEKCIVFTSSVESTHRLCTLLN-HFGELRIKIKEYSGLQRQSVRSKTLKAFREG 384
L++ ++ + FT+S + RL +L F + + E SG VR + L+ F G
Sbjct: 438 LVEKYKWKRFLCFTNSSDQASRLTFVLKVLFQKYSTNVSELSGNLSAKVRKERLRDFAAG 497
Query: 385 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444
KI L+ SDA+ RG+DV V+ V++Y+ P +I TYIHR GRTARAG+ G TLL + ++
Sbjct: 498 KINGLICSDALARGIDVADVDVVLSYEIPRHITTYIHRVGRTARAGRKGTAVTLLTEYDM 557
Query: 445 KRFKKLLQKADND-SCPIHSIPSSLIESLRPV-YKSVRGGISDEAFWKVGCDLHGVNRV 501
FKK+L A+ IH P IE V YK G+ E K + NRV
Sbjct: 558 TLFKKILSDANKVLGEEIHVSPD--IEIQHAVEYKEALAGLRTEKEKKKNQKMAEKNRV 614
>gi|328768512|gb|EGF78558.1| hypothetical protein BATDEDRAFT_35707 [Batrachochytrium
dendrobatidis JAM81]
Length = 761
Score = 248 bits (633), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 163/461 (35%), Positives = 235/461 (50%), Gaps = 81/461 (17%)
Query: 43 LQNMGISSLFPVQVAV---------WQETIGPGLFERDLCINSPTGSGKTLSYALPIVQT 93
L MGI FPVQ A+ W +++ PG DLC+ + TGSGKTL+YA+PIV+T
Sbjct: 159 LTAMGIEHWFPVQEAILPQLLKTRWWTQSVSPG----DLCVAASTGSGKTLAYAVPIVET 214
Query: 94 LSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIK--- 150
L R + +RALV++PTRDLALQV+ F ++ L V GQ+S + E + L+
Sbjct: 215 LLTRVIPRIRALVIVPTRDLALQVRRTFESLVIGTKLRVAAVTGQASFSAEKALLVSAEI 274
Query: 151 --RPKLEAGICYDP---EDVLQEL--QSAVDILVATPGRLMDHINATRGFTLEHLCYLVV 203
L++ + P ED + E S +DIL+ATPGRLMDH+N T GF+L HL +LV+
Sbjct: 275 PCSSSLDSLLLQHPLANEDAITESGGSSRIDILIATPGRLMDHLNGTPGFSLSHLRFLVI 334
Query: 204 DETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKP 263
DE DRLL +++ WL +VL+ ++ +++ D P
Sbjct: 335 DEADRLLNQSFHGWLGSVLK----------------------AVDPVQKEAAASNHLDIP 372
Query: 264 YPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG-------------------------- 297
L K++ SATLT++P+K+A L L +P ++T
Sbjct: 373 STALQKLLFSATLTRNPSKIASLRLRNPRYITVSGSPDGLLDQDVNNVDMNDQPANITSS 432
Query: 298 -ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHR-----LCTL 351
E R+ P L ++ KPL L+ +L +VF SVES HR +L
Sbjct: 433 VEQRFITPPSLVERMVVLSESDKPLALLYFFDTLKHSGVLVFVKSVESAHRLSLLLNLSL 492
Query: 352 LNHFGELRIK---IKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV-EGVNNV 407
H G+ + +S S R K + F+ G+I L+ SD M RGMD+ E V V
Sbjct: 493 KLHHGKASNDQPLTEAFSSDLSVSKRQKLISMFKAGQILGLICSDIMARGMDLGESVKVV 552
Query: 408 VNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFK 448
+NY P+ IK+Y+HR GRTARAG+ G +T L +V+ FK
Sbjct: 553 INYSVPSRIKSYVHRIGRTARAGRDGIAYTFLESRQVRWFK 593
>gi|357628805|gb|EHJ77980.1| putative ATP-dependent RNA helicase DDX51 [Danaus plexippus]
Length = 625
Score = 247 bits (631), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 156/495 (31%), Positives = 249/495 (50%), Gaps = 48/495 (9%)
Query: 3 EAKKKSMPVLP-WMRSPVDVSLFED---CPLDHLPCLDPRLKVALQNMGISSLFPVQVAV 58
E K K VLP W+ VS C +++ L L L + G++ FPVQ V
Sbjct: 112 EKKSKVERVLPYWLSHAYSVSKNLQTLTCKVENQSWLHNTLLTTLTSEGVTHFFPVQEQV 171
Query: 59 W----QETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113
Q+ P L D+C+++PTGSGKTLS+ LPI+Q L N +RALVVLP ++L
Sbjct: 172 IPFIIQQHQHPELLRPHDICVSAPTGSGKTLSFVLPIIQVLMNEIGHHIRALVVLPVQEL 231
Query: 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAV 173
A+QV VF GL V L G + + E ++++ + IC +
Sbjct: 232 AIQVAQVFKKYCTNTGLRVQLLSGSTPLQKEQQQIMRFTETLKWIC------------EI 279
Query: 174 DILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRF 233
DI+V T GRL++H+ T GF+L++L +LV+DE DR++ WL + + + +N
Sbjct: 280 DIIVCTAGRLVEHLQNTEGFSLKNLKFLVIDEADRIMDNIQNDWLYHMEKHIKMENH--- 336
Query: 234 SDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLF 293
S +P +R V K++ SATL+ DP L + L P
Sbjct: 337 --TSNKVPHLNWVGLNSQRSSVH------------KLLFSATLSPDPELLEEWGLFQPKL 382
Query: 294 L----------TTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVE 343
+ +Y P+ L+ ++C ++ KPL L +K + FT+S +
Sbjct: 383 FSAIPIQDHPDSNVSKKYTTPDELQEQYVVCSAEEKPLIFYYFFAELKWDKTLCFTNSSQ 442
Query: 344 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG 403
S HRL LLN + + +K+ E S ++ R L+ F++ +I V++ +DA+ RG+D+
Sbjct: 443 SAHRLTVLLNIWSKGNLKVAELSAALDRTSRELVLRKFKQSEINVIICTDALARGIDIPD 502
Query: 404 VNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHS 463
N V++YD P IKTY+HR GRT RAG++G T++ ++V+ FK +LQ P
Sbjct: 503 CNYVISYDPPRNIKTYVHRVGRTGRAGRIGNAVTIIVHNQVQMFKDILQSGGKSDIPQLE 562
Query: 464 IPSSLIESLRPVYKS 478
+ + +++ L P Y++
Sbjct: 563 MQNDILQDLMPGYQN 577
>gi|499204|gb|AAC14192.1| D-E-A-D box protein [Drosophila melanogaster]
Length = 644
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 173/492 (35%), Positives = 248/492 (50%), Gaps = 67/492 (13%)
Query: 5 KKKSMPVLPWMRSPV-----DVSLFEDCP----LDHLPCLDPRLKVALQNMGISSLFPVQ 55
KK M + W+ P + E+ P +D L L+ AL+ M I LFPVQ
Sbjct: 105 KKVQMQLPNWLAHPTIIEGGSLQPEEEVPASEAIDQLDYLEKYTCQALKQMKIKRLFPVQ 164
Query: 56 VAV--W---QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110
V W P RD+C+++PTGSGKTL++A+PIVQ LS R +RALVVLP
Sbjct: 165 KQVIPWILEAHAKPPPFRPRDICVSAPTGSGKTLAFAIPIVQLLSQRVDCKVRALVVLPV 224
Query: 111 RDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 170
+LALQV V + + L V L Q + DE +L+++ K G Y
Sbjct: 225 AELALQVYRVISELCSKTELEVCLLSKQHKLEDEQEKLVEQYK---GKYY---------- 271
Query: 171 SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 230
S DI+V TPGRL+DH++AT+GF L+ L +LV+DE DR++ +Q WL + + +
Sbjct: 272 SKADIVVTTPGRLVDHLHATKGFCLKSLKFLVIDEADRIMDAVFQNWLYHLDSHVKETTD 331
Query: 231 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 290
A T P + L+ F +P+ K++ SATL+QDP KL L L
Sbjct: 332 QLL--AGTQAPLCYAELQA--------SFGKQPH----KLLFSATLSQDPEKLQDLRLFQ 377
Query: 291 PLFLTTGET-------------------------RYKLPERLESYKLICESKLKPLYLVA 325
P T T RY P L + E +LKPL + A
Sbjct: 378 PRLFATVLTMPVLKDATEEGADTEALTDPGQFVGRYTTPAELTEQYCVTELRLKPLTVFA 437
Query: 326 LLQSLGEEKCIVFTSSVESTHRLCTLLN-HFGELRIKIKEYSGLQRQSVRSKTLKAFREG 384
L++ ++ + FT+S + RL +L F + K+ E SG VR++ L+ F G
Sbjct: 438 LVEKYKWKRFLCFTNSSDQATRLTFVLKVLFQKYSTKVSELSGNLSAKVRNERLRDFAAG 497
Query: 385 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444
KI L+ SDA+ RG+DV V+ V++Y+ P +I TYIHR GRTARAG+ G T+L + ++
Sbjct: 498 KINGLICSDALARGIDVADVDVVLSYETPRHITTYIHRVGRTARAGRKGTAVTVLTEQDM 557
Query: 445 KRFKKLLQKADN 456
FKK+L A+
Sbjct: 558 TLFKKILSDANK 569
>gi|328863604|gb|EGG12703.1| hypothetical protein MELLADRAFT_101203 [Melampsora larici-populina
98AG31]
Length = 892
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 172/515 (33%), Positives = 260/515 (50%), Gaps = 96/515 (18%)
Query: 25 EDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFER-------------- 70
+DC D L L + L+ +GI L PVQ++V+ IG ++
Sbjct: 354 KDCKDDQL-ALSQFIINRLKEIGIEYLLPVQISVFSALIGKLRNKKITPSSILYPINHPP 412
Query: 71 -DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129
D+CIN+PTGSGKTLSY +PIV+TLS+R V LRAL+VLPTRDL LQVK F +I+ G
Sbjct: 413 SDICINAPTGSGKTLSYIVPIVETLSSRTVVRLRALIVLPTRDLVLQVKQTFESISKGTG 472
Query: 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA 189
L + + GQ S + E + L +G P + E + VD+++ATPGRL+DH+N
Sbjct: 473 LKLAIVTGQHSFSQEQA-------LLSGNA--PFNTSSECK--VDVVIATPGRLIDHLNQ 521
Query: 190 TRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL-----QLTRSDNENR----FSDASTFL 240
T GF+L HLC+L++DE D+LL + Q+WL +L +L+++ + ++ + D + +
Sbjct: 522 TPGFSLSHLCFLILDEADQLLSKD-QSWLYQILKYELKKLSKTHSNSKQIINYDDEDSEM 580
Query: 241 PSAFGSLKTIR--------------RCG-----------VERGFKDKPYPRLVKMVLSAT 275
L + R C +E K +P+ R+ ++ SAT
Sbjct: 581 MIQQEELNSARNEPLPLLKKFMDSVECNEISSDWRPLLKLEDPCKTRPF-RI--LLFSAT 637
Query: 276 LTQDPNKLAQLDLHHPLFLTTGE---------TRYKLPERLESYKLICESKLKPLYLVAL 326
L +DP KL L L +PLF+ + Y LP L+ + ++ +LKPL L L
Sbjct: 638 LKRDPTKLTHLGLRNPLFIKVQNPSVEVIDNFSGYSLPPNLQQHLIVTTPQLKPLTLFHL 697
Query: 327 LQSLGEEKCIVFTSSVESTHRLCTLLN------------HFGELRIKIKEYSGLQRQSV- 373
++ + ++F SVE RL L E IK E S + +
Sbjct: 698 IKVREVKNALIFCKSVEGATRLVNLYQLMRKGWMEKSTTEANENEIKDGENSNVLGTAAL 757
Query: 374 ---------RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAG 424
R + L F+ G I +LV SD + RG+D+ + NV+NYD P IK YIHR G
Sbjct: 758 FSSDLKPIDRKRILNEFQNGSINLLVCSDVIARGLDLPTIENVINYDTPVNIKKYIHRIG 817
Query: 425 RTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSC 459
RTARAG+ G+ ++L+ E + K+ ++ + C
Sbjct: 818 RTARAGKFGQAWSLVEFQEARYLKESIKDSLGMEC 852
>gi|193596603|ref|XP_001949748.1| PREDICTED: probable ATP-dependent RNA helicase Dbp73D-like
[Acyrthosiphon pisum]
Length = 528
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 181/523 (34%), Positives = 257/523 (49%), Gaps = 71/523 (13%)
Query: 3 EAKKKSMPVLP-WMRSPVDVSL---FEDCPLDHLPCLDPRLKVALQNMGISSLFPVQ--V 56
+ KK VLP W+ P VS+ + P+D +P LDP L L+N G + FPVQ +
Sbjct: 19 KKNKKVKRVLPDWLAKPTVVSVDLKHLEVPIDGIPELDPALVQKLKNKGCTHFFPVQNQL 78
Query: 57 AVW---QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113
W + + RDLCI++PTGSGKTLSY LPI+QTL + LRAL+VLPT+DL
Sbjct: 79 VPWIIKTQKHWDYRWLRDLCISAPTGSGKTLSYVLPIIQTLKTFSRHQLRALIVLPTKDL 138
Query: 114 ALQVKDVF-AAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
A+QV VF I A L V L ++ ++ E I + YD +L
Sbjct: 139 AVQVYKVFLYYIKNAFDLRVLLLESKNMTLEKEKERI--------VQYDSSIGWIDL--- 187
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
VDI+V TPGRL+DH+ T GF+L++L +LV+DE D WL ++
Sbjct: 188 VDIIVTTPGRLVDHLYYTEGFSLKNLRFLVLDEADSFTNILQNEWL------------HK 235
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP- 291
+D+ + +L T+ D P R +++ SATLTQDP KL L L P
Sbjct: 236 VNDSLAYNGPTKCTLNTLN---------DSP-QRTQRLLFSATLTQDPEKLKFLKLFEPK 285
Query: 292 LFL-------------TTGET---------RYKLPERLESYKLICESKLKPLYLVALLQS 329
LF TTG +Y P+ L+ Y ++C + KPL L L++S
Sbjct: 286 LFTSIIKRKNTQLPTDTTGTDEPVRGDFVGKYTTPKELKEYMVLCPEENKPLTLYHLIRS 345
Query: 330 LGEEKCIVFTSSVESTHRLCTLLNHFGELR-----IKIKEYSGLQRQSVRSKTLKAFREG 384
G ++ I F S HRL LL E +++ E S Q S +K F G
Sbjct: 346 KGLKRVICFVKSKIEVHRLTRLLCKLSEFDTNNSPLRVNEISSDVTQKAHSGYIKQFSNG 405
Query: 385 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444
KI VL+ +D++ RG+D+E ++ V+ Y+ P Y K YIHR GRTARAG G+ T + +
Sbjct: 406 KIDVLICTDSLARGIDIELISCVILYNVPKYPKNYIHRIGRTARAGHKGKAITFVTPEHK 465
Query: 445 KRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSVRGGISDEA 487
+ F+ +L A S + S +E +Y I E+
Sbjct: 466 ELFENVLNSAGKTSLKNMKVDISDLEQYEQMYIDALKAIKTES 508
>gi|321459585|gb|EFX70637.1| hypothetical protein DAPPUDRAFT_112535 [Daphnia pulex]
Length = 721
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 179/519 (34%), Positives = 259/519 (49%), Gaps = 63/519 (12%)
Query: 11 VLP-WMRSPVDVSL---FEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAV--WQETIG 64
VLP W+ P +S P+ L LD L AL I FPVQ V W
Sbjct: 208 VLPTWLAKPSVISCDLSKNKMPIKELNGLDKFLHDALNRNKIGFFFPVQQQVIPWLLESQ 267
Query: 65 PGLFER-DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123
LF D+C+++PTGSGKTL++ LP +Q L ++VR LR L VLP DLA+QV V+ +
Sbjct: 268 QQLFRPCDMCVSAPTGSGKTLAFVLPTIQALWRQSVRRLRCLAVLPVHDLAVQVYRVYLS 327
Query: 124 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL 183
L V L GQ+S DE L+++ K AG + + DI+V TPGRL
Sbjct: 328 FCAGTNLQVALISGQASFYDEQQLLVRKGK--AG----------QYLTKPDIVVCTPGRL 375
Query: 184 MDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSA 243
+DH+ T GF+L+ L YL++DE DR++ E + WL V + +EN + +
Sbjct: 376 VDHLQRTPGFSLKSLRYLIIDEADRIMEEEHNDWLFHVEKAIGLSSENLVAQKLS----- 430
Query: 244 FGSLKTIRRCGVERGFKDKPYPRLV-KMVLSATLTQDPNKLAQLDLHHP-LFLTTGET-- 299
+P+ + V K++ SATL+QDP KL +L L P LF + T
Sbjct: 431 ------------------RPWEKYVQKLLFSATLSQDPEKLTRLGLFQPKLFTSVVSTES 472
Query: 300 ---------------RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 344
++ P L + C LKPL + LL+ + FT+S +
Sbjct: 473 AESADNTIQSHHFVGKFTTPAELTEHFFKCPPMLKPLAVYCLLKKFKYHSALCFTNSRSA 532
Query: 345 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 404
THRLC LL FG+L K+ E S ++ R K LK F GKI +LV +DA++RGMD+ V
Sbjct: 533 THRLCELLKQFGDL--KVAECSSEISKAPRDKLLKDFSTGKIDLLVCTDAVSRGMDLGVV 590
Query: 405 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSI 464
+ V++YD P Y+K YIHRAGR ARAG+ G T+L E+ F KLL A+ + +
Sbjct: 591 DCVISYDSPKYVKNYIHRAGRAARAGRPGTAITILMDSEMHGFNKLLAMAEKKNVTPLDM 650
Query: 465 PSSLIESLRPVYKSVRGGISDEAFWKVGCDLHGVNRVRR 503
E+ ++ G+ + ++ + +R R+
Sbjct: 651 QVEEFETYEEQFRKALDGLKNTVKEEIHTKIVQNDRARQ 689
>gi|345492759|ref|XP_001599929.2| PREDICTED: ATP-dependent RNA helicase DDX51-like [Nasonia
vitripennis]
Length = 631
Score = 241 bits (616), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 172/500 (34%), Positives = 248/500 (49%), Gaps = 77/500 (15%)
Query: 11 VLP-WMRSP--VDVSLFEDCPLDHLP-CLDPRLKVALQNMGISSLFPVQVAV--W----Q 60
VLP W+ P V L + LD + LD +L L+ G LFPVQ V W
Sbjct: 145 VLPHWLTHPEIVHSDLSKGPTLDDMQNVLDSKLVDKLKADGFDKLFPVQARVLAWLVKCD 204
Query: 61 ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV 120
+ G + RD C++ PTGSGKTL+YALPI+Q L + VR +R L+VLP ++LA QV DV
Sbjct: 205 QDYKTGKWVRDTCVSMPTGSGKTLAYALPIIQLLQHNFVRLVRCLIVLPVQELATQVYDV 264
Query: 121 FAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180
+ + + L G SS +E +L+++ + + I S VDI++ATP
Sbjct: 265 ISKYSTGTSPRIALISGASSFKEEQEKLVQKTEKDDYI------------SRVDIVIATP 312
Query: 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFL 240
GRL+DHI T GF+L L +LV+DE DR WL ++
Sbjct: 313 GRLIDHIRKTEGFSLSALRFLVIDEADRATE-----WL-------------------QYI 348
Query: 241 PSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG--- 297
P + V + K++LSATL+QDP KL++L L P+ T+
Sbjct: 349 PFPHSKAPPLSVANVRSSWNTPAQ----KLLLSATLSQDPEKLSRLGLFRPILFTSAVVD 404
Query: 298 ----------------ETRYKLPERLESYKLICESKLKPLYLV-ALLQSLGEEKCIVFTS 340
+RY P L + C + KPL L L++ EK +VFT+
Sbjct: 405 LEKTDKDINLDEDLNVASRYGNPSELTERIVECSIQHKPLALYRQLMKDEVIEKTLVFTN 464
Query: 341 SVESTHRLCTLLNHFGELR-IKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 399
S E+ HRL LL + + + + E S R +TL+ F +G ++VLVSSDA+ RG+
Sbjct: 465 SAEAAHRLAILLQSLLKSKDVTVGELSAQLGSKQREETLEKFIQGTLRVLVSSDALARGL 524
Query: 400 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSC 459
D+ + VV+YD P ++K YIHRAGRT R G G +LL +++ F ++L K
Sbjct: 525 DIPEIKLVVSYDLPKHVKGYIHRAGRTGRGGHPGTAISLLLPNQIALFSRMLNKVGK--- 581
Query: 460 PIHSIPSSLIESLRPVYKSV 479
S+P+ ESL V +SV
Sbjct: 582 ---SVPTPEKESLDEVAESV 598
>gi|328702076|ref|XP_001949723.2| PREDICTED: probable ATP-dependent RNA helicase Dbp73D-like
[Acyrthosiphon pisum]
Length = 528
Score = 241 bits (615), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 181/520 (34%), Positives = 255/520 (49%), Gaps = 71/520 (13%)
Query: 6 KKSMPVLP-WMRSPVDVSL---FEDCPLDHLPCLDPRLKVALQNMGISSLFPVQ--VAVW 59
KK VLP W+ P VS+ + P+D +P LDP L L+N G + FPVQ + W
Sbjct: 22 KKVKRVLPDWLAKPTVVSVDLKHLEVPIDGIPELDPALVQKLKNKGCTHFFPVQNQLVPW 81
Query: 60 ---QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116
+ + RDLCI++PTGSGKTLSY LPI+QTL + LRAL+VLPT+DLA Q
Sbjct: 82 IIKTQKHWDYRWLRDLCISAPTGSGKTLSYVLPIIQTLKTFSRHQLRALIVLPTKDLAAQ 141
Query: 117 VKDVF-AAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDI 175
V VF I A L V L ++ ++ E I + YD +L VDI
Sbjct: 142 VYKVFLYYIKNAFDLRVLLLESKNMTLEKEKERI--------VQYDSSIGWIDL---VDI 190
Query: 176 LVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSD 235
+V TPGRL+DH+ T GF+L++L +LV+DE D WL ++ +D
Sbjct: 191 IVTTPGRLVDHLYYTEGFSLKNLRFLVLDEADSFTNILQNEWL------------HKVND 238
Query: 236 ASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP-LFL 294
+ + +L T+ D P R +++ SATLTQDP KL L L P LF
Sbjct: 239 SLAYNGPTKCTLNTLN---------DSP-QRTQRLLFSATLTQDPEKLKFLKLFEPKLFT 288
Query: 295 -------------TTGET---------RYKLPERLESYKLICESKLKPLYLVALLQSLGE 332
TTG +Y P+ L+ Y ++C + KPL L L++S G
Sbjct: 289 SIIKRKNTQLPTDTTGTDEPVRGDFVGKYTTPKELKEYMVLCPEENKPLTLYHLIRSKGL 348
Query: 333 EKCIVFTSSVESTHRLCTLLNHFGELR-----IKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ I F S HRL LL E +++ E S Q S +K F GKI
Sbjct: 349 KRVICFVKSKIEVHRLTRLLCKLSEFDTNNSPLRVNEISSDVTQKAHSGYIKQFSNGKID 408
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 447
VL+ +D++ RG+D+E ++ V+ Y+ P Y K YIHR GRTARAG G+ T + + + F
Sbjct: 409 VLICTDSLARGIDIELISCVILYNVPKYPKNYIHRIGRTARAGHKGKAITFVTPEHKELF 468
Query: 448 KKLLQKADNDSCPIHSIPSSLIESLRPVYKSVRGGISDEA 487
+ +L A S + S +E +Y I E+
Sbjct: 469 ENVLNSAGKTSLKNMKVDISDLEQYEQMYIDALKAIKTES 508
>gi|307209142|gb|EFN86284.1| Probable ATP-dependent RNA helicase Dbp73D [Harpegnathos saltator]
Length = 660
Score = 238 bits (607), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 174/474 (36%), Positives = 231/474 (48%), Gaps = 70/474 (14%)
Query: 11 VLP-WMRSP--VDVSLFEDCPLDHL-PCLDPRLKVALQNMGISSLFPVQVAV--WQETIG 64
VLP W+ P + L +D L LDP+L AL+ GI LFPVQ +V W +
Sbjct: 165 VLPDWLVHPEVISADLSSGPNIDELHSILDPKLVEALKANGIVKLFPVQSSVIKWLHSCN 224
Query: 65 P----GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV 120
G + RD C+++PTGSGKTL+Y LPIVQ L R V +R LVVLP ++LA Q+ V
Sbjct: 225 KDRRVGWWLRDTCVSAPTGSGKTLAYVLPIVQQLQTRLVPKIRCLVVLPVQELAAQIHKV 284
Query: 121 FAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180
L VGL G SS E S +IK+ S VDI++ATP
Sbjct: 285 MVTYTSHTNLKVGLLSGISSFEQEQSSIIKKT------------ARGNYLSTVDIVIATP 332
Query: 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFL 240
GRL+ HI T GF+L+ L +LV+DE DR WL +L
Sbjct: 333 GRLISHILKTPGFSLDFLRFLVIDEADRTTE-----WL-------------------QYL 368
Query: 241 PSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLT----- 295
P F S G + P K++ SATL+QDP KL++L L P+ T
Sbjct: 369 PE-FHSRAHSLTIGNVHSSEIAPAQ---KLLFSATLSQDPEKLSRLGLFQPILFTTVMVT 424
Query: 296 -----------TGE--TRYKLPERLESYKLICESKLKPLYLVALLQSLGE-EKCIVFTSS 341
TGE RY P L + C ++ KPL L LL K +VFT+S
Sbjct: 425 GKDTDVNLDKMTGEFAGRYTSPGELTELAVECAAEYKPLALYHLLTRHDTISKTLVFTNS 484
Query: 342 VESTHRLCTLLNH-FGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMD 400
++ HRL L+ E + + E S R L F G+ VL+SSDA+ RG+D
Sbjct: 485 GDTAHRLALLIRSLLSERNVTVGELSAQLMPKQRESVLSKFASGETHVLISSDALARGLD 544
Query: 401 VEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 454
+ V VV+YD P +IK YIHRAGRT RAG+ G ++L ++ FK++L A
Sbjct: 545 IPEVQLVVSYDVPKHIKGYIHRAGRTGRAGKPGTAVSVLTASQIGIFKQMLNGA 598
>gi|158286571|ref|XP_308815.4| AGAP006941-PA [Anopheles gambiae str. PEST]
gi|157020531|gb|EAA04138.4| AGAP006941-PA [Anopheles gambiae str. PEST]
Length = 655
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 167/527 (31%), Positives = 259/527 (49%), Gaps = 69/527 (13%)
Query: 13 PWMRSPVDVS--LFEDCP-LDHLPCLDPRLKVALQNMGISSLFPVQVAV--W----QETI 63
PW+ P + L P + LD R+K L++MG LFPVQ V W +
Sbjct: 148 PWLSHPTIIQHDLSAKGPSIKQQSYLDDRIKANLKSMGFKRLFPVQEKVIPWILEAHQKP 207
Query: 64 GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123
P + RD+CI+SPTGSGKTL++A+P+VQ L R +RALV+LP ++LA QV VF
Sbjct: 208 AP-FWPRDVCISSPTGSGKTLAFAVPVVQLLLKRVAPAIRALVILPVQELAEQVFQVFRQ 266
Query: 124 IAPAVGLS-VGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGR 182
+ + V L+ G + E +L+K E Y P+ VDI+V T GR
Sbjct: 267 LCDGTNIHPVVLSRGMQ-LEVEQQKLVKYCNGE----YMPK---------VDIVVTTAGR 312
Query: 183 LMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPS 242
L++H+++T+GFTL HL +L+VDE D+++ + WL + + + +++ + L S
Sbjct: 313 LIEHLHSTKGFTLRHLRFLIVDEADKVMNQIQNDWLYHLNKHVKHESDEYLLGRTADLLS 372
Query: 243 AFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLT------- 295
R +P+ K++ SAT +D KL L L HP T
Sbjct: 373 QSELFDRAR----------QPH----KLLFSATFKRDAEKLKTLKLFHPKLFTAVIDPQE 418
Query: 296 -------TGETR------------YKLPERLESYKLICESKLKPLYLVALLQSLGEEKCI 336
T T+ Y P L+ + E + KPL L L++ G K +
Sbjct: 419 RTMMAQSTATTQAAEPRRGNFAGQYTTPAELKECICLTEQRSKPLTLYGLIRENGYRKFL 478
Query: 337 VFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT 396
VFT+ + ++HRL +L + I+E+S + R L F GK+ ++ +DA+
Sbjct: 479 VFTNGINTSHRLSFVLQRLFGTDMVIEEWSSSLSPATRKSVLNRFSLGKVNGIICTDALA 538
Query: 397 RGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 456
RG+D+E + V++YD P +I YIHR GRTARAG G TLL +DE K+F LL++A+
Sbjct: 539 RGIDIENIEVVISYDMPNHIDKYIHRIGRTARAGLRGTAITLLAEDEKKKFNALLKEANK 598
Query: 457 DSCPIHSIPSSLIESLRPVYKSVRGGISDEAFWKVGCDLHGVNRVRR 503
+ SL E Y +V + + + + +N++R+
Sbjct: 599 RELETMEVSPSLEEEFAAKYANVLNDLRE----ALELETEVINKIRK 641
>gi|242019954|ref|XP_002430423.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
corporis]
gi|212515553|gb|EEB17685.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
corporis]
Length = 518
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 166/502 (33%), Positives = 238/502 (47%), Gaps = 54/502 (10%)
Query: 1 MEEAKKKSMPVLPWMRSPVDVSL---FEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVA 57
M + KK + W+ +P VS+ + +D + LD L+ GI+ FPVQ
Sbjct: 1 MNDKKKVKRKLPDWLSNPSVVSVDLKNLNYTIDSISGLDKIFIDKLRANGITHFFPVQHQ 60
Query: 58 VW-----QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
V E L+ D+C+++PTGSGKTL++ LPI+Q L R + +RALVVLP +D
Sbjct: 61 VIPCVLENERKPYLLWPNDICVSAPTGSGKTLAFVLPILQVLYKRIIPKIRALVVLPVQD 120
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA QV VF A L V L + S E + L K D L S
Sbjct: 121 LANQVFKVFETYAEPTDLKVLLLTPKRSFTAEQNLLYKF------------DDLGNYHSL 168
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
DI+V TPGRL++H+ T L YLV+DE DR++ WL L + N
Sbjct: 169 TDIIVTTPGRLVEHLTKTNELNFSELKYLVIDEADRVMENVQNDWL---YHLNKYIN--- 222
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP- 291
S+ + S I K P K++ SATL+QDP KL L L HP
Sbjct: 223 -SECCKSYQAPIVSYNNI--------LNQKRPPN--KLLFSATLSQDPEKLQALGLFHPR 271
Query: 292 LFLTTGET----------------RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKC 335
LF + E+ +Y P L+ Y +C KPL L LL S +
Sbjct: 272 LFTSVVESGKSTEKNNNDESKFIGKYTTPAELKEYYTVCSKVNKPLLLHHLLISKSWKNI 331
Query: 336 IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 395
+ F +S +T +L +L + + +++ S QS R++ L+ F GK+ +L+SSDA+
Sbjct: 332 LCFVNSSAATFKLAFILKKLCKKKYTVQQLSANIVQSKRNRILQNFENGKVDILISSDAL 391
Query: 396 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 455
RG+D+ V VV+YD P ++KTY+HR GRT RAG+ G L EV F K++ A
Sbjct: 392 ARGIDIPNVKYVVSYDCPKFVKTYVHRIGRTGRAGKEGHSLAFLTSKEVTSFNKMVSAAG 451
Query: 456 NDSCPIHSIPSSLIESLRPVYK 477
+S + + +E YK
Sbjct: 452 KNSVDVFNFEVEELEQYEVTYK 473
>gi|47214668|emb|CAG00904.1| unnamed protein product [Tetraodon nigroviridis]
Length = 447
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 158/475 (33%), Positives = 230/475 (48%), Gaps = 86/475 (18%)
Query: 28 PLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQET---------IGPGLFE-RDLCINSP 77
P+ ++ L L L + GI FPVQ V IG G + RD+C+++P
Sbjct: 26 PVCNVAGLSSNLINKLHHNGIDHFFPVQAEVIPAILEAAQQGLLIGRGGYRPRDICVSAP 85
Query: 78 TGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVG 137
TGSGKTL++ +P+VQ L R V +RAL VLPT++LA QV VF+A A L V + G
Sbjct: 86 TGSGKTLAFVIPVVQVLMQRVVCHVRALAVLPTKELAQQVYKVFSAYAEGTSLRVLVLAG 145
Query: 138 QSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEH 197
Q S++ E + L + AG+ +S DI+VATPGRL+DHIN G L+
Sbjct: 146 QRSLSAEQASL---SEYRAGV----------RRSQADIIVATPGRLVDHINKKSGLKLDQ 192
Query: 198 LCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVER 257
L +L++DE DR++ +QAWL V++ T R +AS+ + + C
Sbjct: 193 LRFLIIDEADRMIDSMHQAWLSQVVKATYGTGGGR--EASSIFSRSEAA------CATAA 244
Query: 258 GFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP-LFLTTGET------------RYKLP 304
P L K++ SATLTQ+P KL QLDLH P LF +T R+ P
Sbjct: 245 SLSPPQMP-LQKLLFSATLTQNPEKLQQLDLHQPRLFSSTHRQADATVPAAQKAERFDFP 303
Query: 305 ERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKE 364
+ L + + C KPL ++ + + + FT+S ++ HR
Sbjct: 304 QGLSEFYVPCTLSRKPLLILHFILRMKLSPILCFTNSRQAAHR----------------- 346
Query: 365 YSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAG 424
L+S+DA RG+D+ GV VVNYD P Y++TY+HR G
Sbjct: 347 ------------------------LISTDAAARGIDISGVKCVVNYDAPQYVRTYVHRVG 382
Query: 425 RTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSV 479
RTARAG+ G FT L + K F K++ A + + S ++ + Y+ V
Sbjct: 383 RTARAGKSGLAFTFLLGVQEKNFLKMVMDAGSPGIQKQIVKSESLKGMEGRYERV 437
>gi|380018891|ref|XP_003693352.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
Dbp73D-like [Apis florea]
Length = 577
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 173/487 (35%), Positives = 245/487 (50%), Gaps = 76/487 (15%)
Query: 2 EEAKKKSMPV---LP-WMRSP--VDVSLFEDCPLDHL-PCLDPRLKVALQNMGISSLFPV 54
E+++ KS V LP W+ +P + V L L+ L LD +L L+ GI+ LFPV
Sbjct: 78 EKSRHKSHEVKRILPEWLTNPRIISVDLDSGPSLEELNSILDLKLIEVLRTNGINKLFPV 137
Query: 55 QVAV--W----QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108
Q ++ W E + RD C+++PTGSGKTL+Y LPI+Q L +R V +R LVV+
Sbjct: 138 QASMISWLLKCNEDRQQKWWLRDTCVSAPTGSGKTLAYVLPIIQILQSRLVPKVRCLVVV 197
Query: 109 PTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQE 168
P ++LA QV VF L VGL G S +E ++K E E
Sbjct: 198 PVQELATQVYKVFVTYTSHTXLKVGLLSGASIFHEEQKNILK------------ESARGE 245
Query: 169 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSD 228
S VDI++ATPGRL+DHI T GF+L +L +LV+DE D+ + +LP D
Sbjct: 246 YISIVDIIIATPGRLIDHILKTPGFSLNNLQFLVIDEADK--AADWLEYLP--------D 295
Query: 229 NENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDL 288
R + F +R C V K++ SATL+QDP KL +L L
Sbjct: 296 PHYRRPRLTLF---------NLRSCEVPAQ----------KLLFSATLSQDPEKLNRLGL 336
Query: 289 HHPLFLTT----------------GE--TRYKLPERLESYKLICESKLKP--LYLVALLQ 328
P+ T+ G+ RY P+ L+ + C ++ KP LY + +
Sbjct: 337 FQPILFTSVLVKDKDDDVNLDKXIGDFIGRYTSPKELKEQAIECATEYKPAALYHIIINN 396
Query: 329 SLGEEKCIVFTSSVESTHRLCTLLNHF-GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
+ K ++FT+S E+THRL LL E I + E S R K L F GKIQ
Sbjct: 397 DITP-KTLIFTNSGETTHRLTILLQSLLSEKNIVVGELSAQLVSKEREKILNKFINGKIQ 455
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 447
+L+ SDA+ RG+D+ + V++YD P +I YIHRAGRT RAG+ G ++L +V F
Sbjct: 456 ILICSDALARGVDIPDIQLVISYDLPKHINGYIHRAGRTGRAGKSGTAISILTPKQVGIF 515
Query: 448 KKLLQKA 454
K +L A
Sbjct: 516 KNMLNNA 522
>gi|312376445|gb|EFR23526.1| hypothetical protein AND_12724 [Anopheles darlingi]
Length = 749
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 168/510 (32%), Positives = 247/510 (48%), Gaps = 64/510 (12%)
Query: 13 PWMRSPV--DVSLFEDCP-LDHLPCLDPRLKVALQNMGISSLFPVQVAV--W--QETIGP 65
PW+ P+ D L P + LD LK L+ MG LFPVQ V W + P
Sbjct: 130 PWLSHPIIIDSDLSAQGPSIKKQAYLDGVLKDNLKAMGYKRLFPVQEKVIPWILEAHAKP 189
Query: 66 GLF-ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124
F RD+CI+SPTGSGKTL++A+PIVQ L R +RALV+LP ++LA QV VF +
Sbjct: 190 APFWPRDVCISSPTGSGKTLAFAVPIVQLLLKRVAPAVRALVILPVQELAEQVYGVFEKL 249
Query: 125 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLM 184
++ + + S E +A + Y Q +Q A DI+V T GRL+
Sbjct: 250 CQGTKITPLVLSRKQSFHQE----------QAKLVYTLHG--QFIQKA-DIVVTTAGRLV 296
Query: 185 DHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAF 244
+H+++T GFTL HL +LV+DE DR++ + WL + + + ++ L
Sbjct: 297 EHLHSTAGFTLCHLRFLVIDEADRVMNQIQNDWLYHLNKHVKQQSDE------YLLGRTA 350
Query: 245 GSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLT--------- 295
G L D+P + K++ SATL++DP KL L HP T
Sbjct: 351 GQLSQTE-------LFDRPQ-QPHKLLFSATLSRDPEKLQTFKLFHPKLFTAVRDPTERA 402
Query: 296 -------TGETR-------------YKLPERLESYKLICESKLKPLYLVALLQSLGEEKC 335
G T+ Y P L + ++KPL L AL++ G K
Sbjct: 403 IALSKSGAGSTKQNALLRRGKFIGQYTTPSELRELVCYTQFRIKPLTLFALIRQAGYRKF 462
Query: 336 IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 395
+VFT+ ++ +HRL +L + I+E+S + R L F GK+ ++ +DA+
Sbjct: 463 LVFTNGIDGSHRLSFVLQRLFGTEMVIEEWSSSLTPATRRSVLHRFSLGKVNGIICTDAL 522
Query: 396 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 455
RG D++ + VV+YD P +I TYIHR GRTARAG G TLL +E K+F +L++A
Sbjct: 523 ARGFDIDDIEIVVSYDMPRHISTYIHRIGRTARAGNRGTSITLLIDEEKKKFNSMLKEAG 582
Query: 456 NDSCPIHSIPSSLIESLRPVYKSVRGGISD 485
+ I SS+ E Y + + D
Sbjct: 583 KEELEAVEIQSSVEEEYAGKYSAALNDLRD 612
>gi|328790575|ref|XP_001122539.2| PREDICTED: ATP-dependent RNA helicase DDX51-like [Apis mellifera]
Length = 600
Score = 234 bits (597), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 169/479 (35%), Positives = 236/479 (49%), Gaps = 82/479 (17%)
Query: 11 VLP-WMRSP--VDVSLFEDCPLDHL-PCLDPRLKVALQNMGISSLFPVQVAV--W----Q 60
+LP W+ +P + V L L+ L LD +L L+ GI+ LFPVQ ++ W
Sbjct: 114 ILPEWLTNPRIISVDLDSGPSLEELHSILDLKLIEVLRTNGINKLFPVQASMISWLLKCN 173
Query: 61 ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV 120
E + RD C+++PTGSGKTL+Y LPI+Q L +R V +R LVV+P ++LA QV V
Sbjct: 174 EDRQQKWWLRDTCVSAPTGSGKTLAYVLPIIQILQSRLVPKVRCLVVVPVQELATQVYKV 233
Query: 121 FAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180
F L VGL G S +E ++K E E S VDI++ATP
Sbjct: 234 FVTYTSHTNLKVGLLSGASIFHEEQKNILK------------ESARGEYISIVDIIIATP 281
Query: 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFL 240
GRL+DHI T GF+L L +LV+DE D+ WL +L
Sbjct: 282 GRLIDHILKTPGFSLNDLQFLVIDEADK-----AADWLE-------------------YL 317
Query: 241 PSAFG-----SLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLT 295
P +L + C + K++ SATL+QDP KL +L L P+ T
Sbjct: 318 PDPHYRRPRLTLLNLHSCEIPAQ----------KLLFSATLSQDPEKLNRLGLFQPILFT 367
Query: 296 TGET-----------------RYKLPERLESYKLICESKLKP--LYLVALLQSLGEEKCI 336
+ T RY P+ L+ + C ++ KP LY + + + K +
Sbjct: 368 SVLTDKDDDVNLDKEVGDFIGRYTSPKELKEQAIECATEYKPAALYHIIINNDII-PKTL 426
Query: 337 VFTSSVESTHRLCTLLNHF-GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 395
+FT+S ++THRL LL F E I + E S R K L F GKIQ+L+ SDA+
Sbjct: 427 IFTNSGKTTHRLTILLQSFLSEKNIIVGELSAQLVSKEREKILNKFINGKIQILICSDAL 486
Query: 396 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 454
RG+D+ V VV+YD P +I YIHRAGRT RAG+ G ++L +V FK +L A
Sbjct: 487 ARGVDIPDVQLVVSYDLPKHINGYIHRAGRTGRAGKSGTAISILTSKQVGIFKHMLNNA 545
>gi|383850916|ref|XP_003701020.1| PREDICTED: probable ATP-dependent RNA helicase Dbp73D-like
[Megachile rotundata]
Length = 679
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 173/480 (36%), Positives = 240/480 (50%), Gaps = 71/480 (14%)
Query: 2 EEAKKKSMPVLP-WMRSPVDVS--LFEDCPLDHL-PCLDPRLKVALQNMGISSLFPVQVA 57
++ K++ VLP W+ +P +S L L+ L LD +L L+ GI+ LFPVQ +
Sbjct: 183 DKKKQEVKRVLPDWLANPNIISNDLNNGPSLESLNSVLDTKLIQILKTNGINKLFPVQAS 242
Query: 58 V--W----QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111
+ W E G + RD C+++PTGSGKTL+Y LPIV L +R V +R LVV+P +
Sbjct: 243 MISWLLKCNEDKQQGWWLRDTCVSAPTGSGKTLAYVLPIVHILQSRLVPKIRCLVVVPVQ 302
Query: 112 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 171
+LA QV V A L+V L G SS E S +++ + E S
Sbjct: 303 ELAAQVYKVMVAYTSHTNLTVALLSGASSFQQEQSTILRT------------NARGESVS 350
Query: 172 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN 231
AVDI+VATPGRL+DHI T F+L L +LV+DE DR+
Sbjct: 351 AVDIVVATPGRLIDHILKTPEFSLSDLRFLVIDEADRV---------------------- 388
Query: 232 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 291
+D +LP + + R K P + K++ SATL+QDP KL+ L L P
Sbjct: 389 --TDWIDYLPEPHNHTPRLTLSNM-RSSK----PPVQKLLFSATLSQDPKKLSHLRLFQP 441
Query: 292 LFLTT----------------GE--TRYKLPERLESYKLICESKLKPLYLVALLQSLGEE 333
+ TT G RY PE L + C + KPL L LL
Sbjct: 442 VLFTTVLVTDNDNDVNLDTEAGNYIGRYTGPEGLTERAVECTMEYKPLALYDLLTRNNTI 501
Query: 334 -KCIVFTSSVESTHRLCTLLNHFGELR-IKIKEYSGLQRQSVRSKTLKAFREGKIQVLVS 391
K ++FT+S ES HRL LL ++ + + S + R L F G+IQ+L+S
Sbjct: 502 IKTLIFTNSGESAHRLTILLGSLLAVKNVTVGTLSAQLKPKERENVLGKFITGEIQILIS 561
Query: 392 SDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLL 451
SDA+ RGMD+ V V++YD P +IK YIHRAGRT RAG+ G ++L +V FK +L
Sbjct: 562 SDALARGMDIPDVGLVISYDLPKHIKGYIHRAGRTGRAGKTGIVISILTPKQVGLFKSML 621
>gi|326429455|gb|EGD75025.1| hypothetical protein PTSG_07250 [Salpingoeca sp. ATCC 50818]
Length = 751
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 165/436 (37%), Positives = 231/436 (52%), Gaps = 55/436 (12%)
Query: 14 WMRSPVDVSLF----EDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETI---GPG 66
W+ PV V E P++ L L PRL L+ G S LFPVQ + + +
Sbjct: 220 WLDHPVRVDALIKPDELLPMETL-GLHPRLLAQLKVAGFSRLFPVQAVIVPDMLRSRHSA 278
Query: 67 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA- 125
D+C+++PTGSGKTL+Y +PI+Q L R V LRA+VVLPTR L QV VF A +
Sbjct: 279 YPAGDICVSAPTGSGKTLAYVIPILQRLCTRVVPQLRAVVVLPTRQLVQQVHAVFEACSR 338
Query: 126 -----PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180
V + V + GQ+++ E + + +P+L+ SAVDI++ TP
Sbjct: 339 NIHADSTVPIRVAMCAGQTALWKE--QQLLQPRLDGS-------------SAVDIVITTP 383
Query: 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFL 240
GRL+DHI+ T GFTL+H+ +LVVDE DRLL ++YQ+WL + + D +
Sbjct: 384 GRLVDHIDRTDGFTLQHVEFLVVDEADRLLMQSYQSWLSKLHNCLFAGGR---PDPTNLT 440
Query: 241 PSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP---LFLTTG 297
P + + R F P + KM SATL++DP +A L L P L TG
Sbjct: 441 PQMYA----LMRAACAHNF---PGVHVQKMFFSATLSRDPQIIANLRLCFPRMYLATQTG 493
Query: 298 ET-----------RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTH 346
+ +P +L + ++C + KPL L+ LL SL ++ +VF SSVE+T
Sbjct: 494 QAVVCVFGGKKGVNTVIPPQLHEHSIVCSASEKPLVLLYLLSSLQMDRTLVFASSVETTT 553
Query: 347 RLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNN 406
RL TLL FG +R +++ S Q S LK F G+I VLV SD M RG+D+ V N
Sbjct: 554 RLYTLLKLFGAVR--VQQISSKQDARKSSGILKKFERGEISVLVCSDTMARGIDLANVEN 611
Query: 407 VVNYDKPAYIKTYIHR 422
V+ YD P+ KTYIHR
Sbjct: 612 VICYDCPSKPKTYIHR 627
>gi|157820497|ref|NP_001100620.1| ATP-dependent RNA helicase DDX51 [Rattus norvegicus]
gi|149063713|gb|EDM14036.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 (predicted), isoform
CRA_b [Rattus norvegicus]
Length = 601
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 167/505 (33%), Positives = 246/505 (48%), Gaps = 93/505 (18%)
Query: 7 KSMPVLP-WMRSP--VDVSLFED-CPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQET 62
K P LP W+ P V S+ ED P++ +P + P L+ L+ GISS FPVQ AV
Sbjct: 141 KVQPFLPAWLAKPSCVKKSVTEDLTPIEDIPEVHPDLQKQLRANGISSYFPVQAAVIPAL 200
Query: 63 ---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
+G G ++ DLC+++PTGSGKTL++ +P+VQ L +R V +RALVVLPT++
Sbjct: 201 LESADNGFLVGRGGYQPSDLCVSAPTGSGKTLAFVIPVVQALLHRVVCHIRALVVLPTKE 260
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA QV VF L V L GQ S+A E L++ K G C
Sbjct: 261 LAQQVSKVFNIYTDTTPLRVALVTGQKSLAKEQESLVQ--KTADGFC-----------CL 307
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
DI+VATPGRL+DHI+ T GF+L+ L +L++DE DR++ +Q+WLP V+
Sbjct: 308 ADIVVATPGRLVDHIDQTPGFSLQQLRFLIIDEADRMIDSMHQSWLPRVVA--------- 358
Query: 233 FSDASTFLPSAFGSLKTIRRC---GVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH 289
A+ + GS ++R V P L K++ SATLTQ+P KL +L L+
Sbjct: 359 ---AAFYTEDPTGSCALLQRTQPQAVTAASTCIPQMPLQKLLFSATLTQNPEKLQRLGLY 415
Query: 290 HPLFLTT---------------GETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEK 334
P +T +Y P L + + C KPL + L+ + +
Sbjct: 416 QPRLFSTRLGHQSPRDTVEVDENLGKYTFPVGLTHHYVPCRLSSKPLIVFHLVLGMNFSR 475
Query: 335 CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394
+ FT+S E++HRL L FG + + E+S R K LK F +GKIQ++
Sbjct: 476 ALCFTNSRENSHRLFLLAQAFGG--VSVAEFSSRYGPGQRKKILKQFEQGKIQLV----- 528
Query: 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 454
GRTARAG+ G+ FTLL K + ++F +++ +A
Sbjct: 529 -----------------------------GRTARAGKTGQAFTLLLKVQERKFLQMVSEA 559
Query: 455 DNDSCPIHSIPSSLIESLRPVYKSV 479
H +P L++ L Y++
Sbjct: 560 GVPELACHEVPRKLLQPLVARYETA 584
>gi|332018269|gb|EGI58874.1| Putative ATP-dependent RNA helicase Dbp73D [Acromyrmex echinatior]
Length = 761
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 169/473 (35%), Positives = 232/473 (49%), Gaps = 70/473 (14%)
Query: 11 VLP-WMRSP--VDVSLFEDCPLDHL-PCLDPRLKVALQNMGISSLFPVQVAV--WQETIG 64
VLP W+ P + L PL+ L LD +L L+ GI LFPVQ + W
Sbjct: 274 VLPDWLAHPEIISADLNSGPPLEELESVLDAKLIEVLRANGIIKLFPVQSNIIKWLHKCN 333
Query: 65 P----GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV 120
G + +D C+++PTGSGKTL+Y LPIVQ L R V +R LVVLP ++LA Q+ V
Sbjct: 334 MHRKIGWWPKDTCVSAPTGSGKTLAYVLPIVQELQTRFVPKIRCLVVLPVQELAAQIHKV 393
Query: 121 FAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180
L VGL G SS E + +IK K E G + S VDI++ATP
Sbjct: 394 MVTYTSHTDLKVGLLSGASSFKQEQNSIIK--KTERG----------QYLSRVDIIIATP 441
Query: 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFL 240
GRL+DHI T GF+L++L +LV+DE DR + +LP + +
Sbjct: 442 GRLLDHILKTPGFSLDYLRFLVIDEADRATE--WLQYLP---------------EFHSRP 484
Query: 241 PSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET- 299
P G++++ + + K++ SATL+QDP KL++L L P TT T
Sbjct: 485 PLTLGNMRSSKVIPAQ------------KLLFSATLSQDPEKLSRLGLFQPKLFTTVVTD 532
Query: 300 ----------------RYKLPERLESYKLICESKLKPLYLVALLQSLG-EEKCIVFTSSV 342
RY P L + C KP+ L LL K +VFT+S
Sbjct: 533 KDIDINLDKVAGDFIGRYTSPGELTELAVECPPSYKPIVLYQLLTKHDIIPKTLVFTNSG 592
Query: 343 ESTHR-LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 401
+ HR + E + + E S R L F GKI VL+SSDA+ RG+D+
Sbjct: 593 QHAHRLALLMQLLLSEWNVTVGELSAQLASKQREDILSKFANGKIHVLISSDALARGLDI 652
Query: 402 EGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 454
V VV+YD P +IK YIHRAGRT RAG+ G ++L ++V FK++L A
Sbjct: 653 LDVQLVVSYDLPKHIKGYIHRAGRTGRAGKSGTAVSILTPNQVGIFKQMLSGA 705
>gi|350416892|ref|XP_003491155.1| PREDICTED: probable ATP-dependent RNA helicase Dbp73D-like [Bombus
impatiens]
Length = 615
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 171/485 (35%), Positives = 237/485 (48%), Gaps = 81/485 (16%)
Query: 5 KKKSMPVLP-WMRSPVDVSL-FEDCPL--DHLPCLDPRLKVALQNMGISSLFPVQVAV-- 58
K++ +LP W+ +P +S+ P D LD +L AL+ GI+ LFPVQ ++
Sbjct: 122 KREVKRILPEWLANPEVISIDLNSGPTLEDMNSILDSKLIEALRANGINKLFPVQASMVS 181
Query: 59 W----QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114
W + + RD C+++PTGSGKTL+Y LPIVQ L R V +R LVV P ++LA
Sbjct: 182 WLLKCDKDRQQNWWLRDTCVSAPTGSGKTLAYVLPIVQILQFRLVPKVRCLVVAPVQELA 241
Query: 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVD 174
+Q+ V L VGL G S+ +E + K E+ E S VD
Sbjct: 242 MQIYKVMVTYTSHTNLRVGLLSGASAFHEEQRNIRK------------ENDRGEYISLVD 289
Query: 175 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 234
I+VATPGRL+DHI T GF+L+ + +LV+DE D WL
Sbjct: 290 IVVATPGRLIDHILKTSGFSLDDIRFLVIDEAD-----TAADWL---------------- 328
Query: 235 DASTFLPSAFG-----SLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH 289
+LP +L +R + K++ SATL+QDP KL +L L
Sbjct: 329 ---EYLPEPHYQTPRLTLSNLRSSKIPAQ----------KLLFSATLSQDPEKLNRLGLF 375
Query: 290 HPLFLT----TGET--------------RYKLPERLESYKLICESKLKPLYLVALLQSLG 331
HP+ T TG+ RY PE L+ + CE++ KP+ L LL G
Sbjct: 376 HPILFTSVLVTGKDDDVNLDKEAVNFIGRYTSPEELKEEAIECEAEYKPVALYQLLIRDG 435
Query: 332 -EEKCIVFTSSVESTHRLCTLLNH-FGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 389
K +VFT+S + HRL LL + I + E S R L F G IQ+L
Sbjct: 436 ITSKALVFTNSGGTAHRLTILLQSLLSKKNIVVGELSAQLVSKEREDILTKFTSGNIQIL 495
Query: 390 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKK 449
V SDA+ RG+D+ V V++YD P +I YIHRAGRT RAG+ G ++L +VK FK
Sbjct: 496 VCSDALARGVDIPNVQLVISYDLPKHINGYIHRAGRTGRAGKSGTAISILTPKQVKIFKH 555
Query: 450 LLQKA 454
+L A
Sbjct: 556 MLNNA 560
>gi|340711741|ref|XP_003394428.1| PREDICTED: probable ATP-dependent RNA helicase Dbp73D-like [Bombus
terrestris]
Length = 659
Score = 231 bits (590), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 170/485 (35%), Positives = 237/485 (48%), Gaps = 81/485 (16%)
Query: 5 KKKSMPVLP-WMRSPVDVSL-FEDCPL--DHLPCLDPRLKVALQNMGISSLFPVQVAV-- 58
K++ +LP W+ +P +S+ P D LD +L AL+ GI+ LFPVQ ++
Sbjct: 166 KREVKRILPEWLANPEVISIDLNSGPTLEDMNSILDSKLIEALRANGINKLFPVQASMVS 225
Query: 59 W----QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114
W + + RD C+++PTGSGKTL+Y LPIVQ L R V +R LVV P ++LA
Sbjct: 226 WLLKCNKERQQKWWLRDTCVSAPTGSGKTLAYVLPIVQILQFRLVPKVRCLVVAPVQELA 285
Query: 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVD 174
+Q+ V L VGL G S+ +E + K E+ E S VD
Sbjct: 286 MQIYKVMVTYTSHTNLRVGLLSGASAFHEEQRNIRK------------ENDRGEYISLVD 333
Query: 175 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 234
I+VATPGRL+DHI T GF+L+ + +LV+DE D WL
Sbjct: 334 IVVATPGRLIDHILKTSGFSLDDIRFLVIDEAD-----TAADWLE--------------- 373
Query: 235 DASTFLPSAFG-----SLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH 289
+LP +L +R + K++ SATL+QDP KL +L L
Sbjct: 374 ----YLPEPHYQTPRLTLSNLRSSKIPAQ----------KLLFSATLSQDPEKLNRLGLF 419
Query: 290 HPLFLTT----------------GE--TRYKLPERLESYKLICESKLKPLYLVALLQSLG 331
HP+ T+ G RY PE L+ + CE++ KP+ L L+ G
Sbjct: 420 HPILFTSVLVTDKDDDVNLDKEVGNFIGRYTSPEELKEEAIECEAEYKPVALYQLIIRNG 479
Query: 332 -EEKCIVFTSSVESTHRLCTLLNH-FGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 389
K +VFT+S + HRL LL + I + E S R L F GKIQ+L
Sbjct: 480 ITSKVLVFTNSGGTAHRLTILLQSLLSKENIVVGELSAQLVSKEREDILTKFSSGKIQIL 539
Query: 390 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKK 449
V SDA+ RG+D+ V V++YD P +I YIHRAGRT RAG+ G ++L +VK FK
Sbjct: 540 VCSDALARGVDIPNVQLVISYDLPKHINGYIHRAGRTGRAGKSGTAISILTPKQVKIFKH 599
Query: 450 LLQKA 454
+L A
Sbjct: 600 MLNNA 604
>gi|397634960|gb|EJK71658.1| hypothetical protein THAOC_06880 [Thalassiosira oceanica]
Length = 790
Score = 231 bits (589), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 181/540 (33%), Positives = 254/540 (47%), Gaps = 134/540 (24%)
Query: 70 RDLCINSPTGSGKTLSYALPIVQTLSN-------RAVRCLRALVVLPTRDLALQVKDVFA 122
RD+C +SPTGSGKTL++ LPI+ L + R +R LRALVVLP+RDLA QV VF
Sbjct: 221 RDVCCHSPTGSGKTLAFVLPILTALHDGTSCGGARGLRRLRALVVLPSRDLARQVHGVFM 280
Query: 123 AIAPAVGLSVGLAVG----QSSIADEISELIKRPKLEAGICY------------------ 160
+ + +GLAVG ++ + +E L+ + E+ Y
Sbjct: 281 RYSKGSRIKIGLAVGGGRKRTDLTNERRSLVVESQHESTGHYKEDDGTVIRRRSGGPLEE 340
Query: 161 ---------DPEDVLQELQ---------------------SAVDILVATPGRLMDHINAT 190
DP + + L SAVDILV TPGRL+DH+++T
Sbjct: 341 ANARVRHSFDPTSISEALSAFDGRGSKDSCFEATPKICGISAVDILVCTPGRLVDHLDST 400
Query: 191 RGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDN-------ENRFS--------- 234
GFTL+HL ++V+DE DRL+ + YQ W+ VLQ + S+N + F
Sbjct: 401 PGFTLQHLRFIVIDEADRLVNQPYQNWIRRVLQASNSENCFEPLNLDMSFREYIRQPLRT 460
Query: 235 --DASTF--------------LPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ 278
D TF S G T G+ G +P P L K++ SATLTQ
Sbjct: 461 APDGQTFNIDPVTHRIAGSGAAHSLLGDSNTTE-SGLIGGTIGRPVP-LRKLLFSATLTQ 518
Query: 279 DPNKLAQLDLHHPL-----FLTTGET----------RYKLPERLESYKLICESKLKPL-- 321
DP KLA+L L +P +L ++ +Y LP L + C ++ KPL
Sbjct: 519 DPQKLARLGLDNPKHYDANYLKKHQSGSATEEAKAGKYFLPVGLRESMVECTAEQKPLVL 578
Query: 322 ----------YLVALLQSLGEEKCIVFTSSVESTHRLCTLL------NHFGELRIKIKEY 365
+ + + IVFTSSV+STHRL LL +G L + EY
Sbjct: 579 LALLLDERRQHKMVESSEQAADLTIVFTSSVDSTHRLARLLQLLWAAGGYG-LPSHVAEY 637
Query: 366 SGLQRQSVRSKTLKAFREG-----KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYI 420
S R+ L+ R K+ VLV SD M RGMD+ V V+NYD P++ KTYI
Sbjct: 638 SSSIDTKQRAAILRRCRSSLGENEKVSVLVCSDGMARGMDLPSVGVVINYDVPSFAKTYI 697
Query: 421 HRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIH--SIPSSLIESLRPVYKS 478
HR GRTAR G+ GR +L +V +F+K+ D + +H S+ L++ P+YK+
Sbjct: 698 HRCGRTARCGRTGRAINVLKGGQVNKFRKMRSLIDGGADAVHEGSVKKDLVKGALPLYKA 757
>gi|403417594|emb|CCM04294.1| predicted protein [Fibroporia radiculosa]
Length = 707
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 160/468 (34%), Positives = 227/468 (48%), Gaps = 87/468 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFE---------RDLCINSPTGSGKTLS 85
L + K L +GIS LF VQ AV + P + RDLC+++PTGSGKTL+
Sbjct: 201 LSEKTKKRLLELGISELFAVQTAVVPFLLTPKSLKSLYLPYNPPRDLCVSAPTGSGKTLA 260
Query: 86 YALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEI 145
Y LPIV+ LS R V LRALVVLPTRDL QV++ F AI GL +G A GQ S E
Sbjct: 261 YVLPIVEILSTRIVVRLRALVVLPTRDLVTQVRETFEAIGRGRGLKIGTATGQHSFTHEQ 320
Query: 146 SELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR-GFTLEHLCYLVVD 204
++L+ ++ ++ TR G L HL +LV+D
Sbjct: 321 AQLVADRSSQSVSLFE----------------------------TRTGSQLMHLRFLVID 352
Query: 205 ETDRLLREAYQAWLPTVLQLTRSD-NENRFSDASTFLPSAFGSLKTIRRCG--------- 254
E DRLL +++Q WL VL TR N +++ T ++ +TI R
Sbjct: 353 EADRLLAQSFQDWLAQVLAATRPPANPEDLTESRTLADNSMAR-RTIPRADALAPNYLHL 411
Query: 255 ------VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL--------TTGET- 299
V +K K++ SATLT+DP+K+ L+LH P + T +T
Sbjct: 412 LHDVPRVRTDIDEKRESSCQKLLFSATLTRDPSKIVALNLHDPKYFVVRGRADGTAADTE 471
Query: 300 ----------RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLC 349
++ +P L + ++C+S KPL L L+ G +VFT S EST RL
Sbjct: 472 EADLMSLVMEKFTMPSSLSEHMIVCDSASKPLMLFQLVHGHGVTNALVFTKSAESTTRLM 531
Query: 350 TLLNHF-----------GEL--RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT 396
L F G + I K YS R L F+ +I +L+ SD ++
Sbjct: 532 RLFEFFEGAYSGGPDPSGSIPKSIVTKAYSSDLSPGERKLILDKFKNQEIHILICSDLIS 591
Query: 397 RGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444
RG+D+ V++VV+YD P ++ Y+HR GRTARAG+ G +TL+ + EV
Sbjct: 592 RGIDISHVSHVVSYDAPIDMRKYVHRVGRTARAGRAGDAWTLVEEQEV 639
>gi|170032268|ref|XP_001844004.1| ATP-dependent RNA helicase DDX51 [Culex quinquefasciatus]
gi|167872120|gb|EDS35503.1| ATP-dependent RNA helicase DDX51 [Culex quinquefasciatus]
Length = 695
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 163/489 (33%), Positives = 251/489 (51%), Gaps = 71/489 (14%)
Query: 13 PWMRSP--VDVSLFEDCP-LDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFE 69
PW+ P +D L + + L LD ++K L+ +G LFPVQ ET+ P + +
Sbjct: 123 PWLSHPTVIDSDLSKKGKSIKKLGYLDDQVKANLKKLGFKRLFPVQ-----ETVIPWILD 177
Query: 70 ----------RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKD 119
RD+CI+SPTGSGKTL++A+P+VQ L NR +RALV+LP ++LA QV
Sbjct: 178 AHQKPTPFWPRDVCISSPTGSGKTLAFAVPVVQLLLNRIAPAIRALVILPVKELAEQVFG 237
Query: 120 VFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179
VF + + L + + + E S+L+ R E Y P+ VDI+V T
Sbjct: 238 VFEKLCEGTKIRPLLLSRKQTFSVEQSKLVARFNGE----YIPK---------VDIVVTT 284
Query: 180 PGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTF 239
GRL++H+++T GFTL+HL +L++DE DR++ + WL + + + +++
Sbjct: 285 AGRLVEHLHSTTGFTLKHLRFLIIDEADRVMDQIQNDWLYHLNKHVKQESDE------YL 338
Query: 240 LPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT--- 296
L A G L + DKP + K++ SATL+QDP KL L HP T
Sbjct: 339 LGRAAGQLS-------QSELFDKPR-QPHKLLFSATLSQDPEKLNTFKLFHPKLFTAVSD 390
Query: 297 ---------------GETR------YKLPERLESYKLICESKLKPLYLVALLQSLGEEKC 335
E R Y P L + + K+KPL L AL++ G ++
Sbjct: 391 PAKRLAALVRHHQQAEEKRGKFIGQYATPMELRELVCMTQFKIKPLTLFALIKENGYKRF 450
Query: 336 IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 395
+ FT+S++ +HRL +L + I+E+S R L F GK+ ++ +DA+
Sbjct: 451 LCFTNSIDGSHRLSFVLQKMFGTELVIEEWSSSLSPQARKSVLSRFALGKVNGIICTDAL 510
Query: 396 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 455
RG+D++ ++ V++YD P +I TYIHR GRT RAG G T+L +E K+F+ L +A
Sbjct: 511 ARGIDIDDIDVVISYDMPRHINTYIHRIGRTGRAGNRGTSITMLIDEERKKFQSTLAEAG 570
Query: 456 NDSCPIHSI 464
P+ SI
Sbjct: 571 KQ--PLESI 577
>gi|164656042|ref|XP_001729149.1| hypothetical protein MGL_3616 [Malassezia globosa CBS 7966]
gi|159103039|gb|EDP41935.1| hypothetical protein MGL_3616 [Malassezia globosa CBS 7966]
Length = 730
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 156/442 (35%), Positives = 224/442 (50%), Gaps = 56/442 (12%)
Query: 18 PVDV----SLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIG--------- 64
P DV +L D P H L P + L+ +GI F VQ AV +
Sbjct: 201 PTDVATTNTLALDTPNTHGVRLSPPVHRQLEQLGIREWFAVQGAVIPALLRDVHAHHLYL 260
Query: 65 PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124
P RDLCI++PTGSGKTL+Y +PI++ L R + LRAL+++PTRDLA+QV+DV A+
Sbjct: 261 PYAPPRDLCISAPTGSGKTLAYVVPIIEVLHKRTIPQLRALILVPTRDLAVQVRDVLEAV 320
Query: 125 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLM 184
GL + G S E +L++ DV +S DIL+ATPGRL+
Sbjct: 321 GKGSGLRYAMITGNHSFRHEQDQLVR----------SDSDV---NRSPTDILIATPGRLV 367
Query: 185 DHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAF 244
DH+ TRGFTLEHL YLV+DE DRLL +++Q W+PT+L E R + PS +
Sbjct: 368 DHLRGTRGFTLEHLRYLVIDEADRLLGQSFQQWVPTLLDAL----EPRPHSGTCAPPSLW 423
Query: 245 GSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLT--------- 295
R P + K++ SATLT+DP K+ L L P F+
Sbjct: 424 EEAGQEHNHTWTRDDMQVPQASVQKLLFSATLTRDPAKVGALRLRQPQFIRVRDPGISDG 483
Query: 296 ---TGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEE-----KCIVFTSSVESTHR 347
E + LP L+ + L+ + K LYL+ LL + + + FT SVE+ +R
Sbjct: 484 QGLVHEQHFALPAGLQQHMLVAPTSQKVLYLLHLLHTPSADTEPLRHALCFTKSVETANR 543
Query: 348 LCTLLNHFGEL--------RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 399
L L+ F E ++++ YS R + L+ F+ G I +LV SD + RG+
Sbjct: 544 LVRLVAFFEEAWSRHTNTPALQVRFYSSDLGTGERIQLLRDFQHGHIDLLVCSDLIARGI 603
Query: 400 DVEGVNNVVNYDKP-AYIKTYI 420
D+ V +V++YD P ++ TYI
Sbjct: 604 DLPHVRHVISYDVPLIWLNTYI 625
>gi|195997819|ref|XP_002108778.1| hypothetical protein TRIADDRAFT_52102 [Trichoplax adhaerens]
gi|190589554|gb|EDV29576.1| hypothetical protein TRIADDRAFT_52102 [Trichoplax adhaerens]
Length = 625
Score = 228 bits (582), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 157/434 (36%), Positives = 225/434 (51%), Gaps = 74/434 (17%)
Query: 7 KSMPVLP----WMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQET 62
+S P+ P W+ P ++ + +D + L + L+ G+S LFPVQ T
Sbjct: 159 QSTPLSPNFPQWIAKPNYINSHDKIKIDQVSYLQKFILKKLKKQGMSHLFPVQ-----ST 213
Query: 63 IGPGLFE-------------RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109
I P + + D+C+++PTGSGKTL Y LPI+Q L R+V LRAL+++P
Sbjct: 214 IIPTILKDYQHFGLCTPLPVHDICVSAPTGSGKTLVYVLPIIQVLMRRSVMLLRALILVP 273
Query: 110 TRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL 169
T DLA QVK VF GL + A+GQ + E ELI D L
Sbjct: 274 TADLAYQVKKVFEQFNEGSGLKIATAIGQRNFKIEQGELI--------------DALGG- 318
Query: 170 QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDN 229
+S VDIL+ATPGRL+DHIN T+ FTLEHL +LV+DE D+LL ++ + + L+
Sbjct: 319 RSNVDILIATPGRLIDHINMTKHFTLEHLRFLVLDEADKLLISSHHQLIMSALKACYK-- 376
Query: 230 ENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLV-----------KMVLSATLTQ 278
++ S +P L T R D P P +V K++ SATLT
Sbjct: 377 ----AEQSQIIPPNKFILHTTPR--------DPPIPSIVSKYCNNKLPLQKLLFSATLTY 424
Query: 279 DPNKLAQLDLHHPLF---------LTTGETRYKL-PERLESYKLICESKLKPLYLVALLQ 328
DP KLA L+L PL L+T E Y + P L Y +ICE KPL ++ +Q
Sbjct: 425 DPEKLAPLELFSPLLYQISDQKSNLSTNEIDYYVTPAELTEYYIICEPGEKPLTIIHFMQ 484
Query: 329 SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 388
+L + + FT+S EST RL LL+ FG++R+ S + R+ R + +K F G+I +
Sbjct: 485 ALKHLRVLCFTNSKESTKRLSLLLSIFGDIRVATLS-SEVPRKD-RKRIIKQFSSGEIDL 542
Query: 389 LVSSDAMTRGMDVE 402
L+ SD + RG+D+E
Sbjct: 543 LICSDTVARGIDIE 556
>gi|19075832|ref|NP_588332.1| ATP-dependent RNA helicase Dbp6 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|74662371|sp|Q76PD3.1|DBP6_SCHPO RecName: Full=ATP-dependent RNA helicase dbp6
gi|3581903|emb|CAA20842.1| ATP-dependent RNA helicase Dbp6 (predicted) [Schizosaccharomyces
pombe]
Length = 604
Score = 228 bits (582), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 163/482 (33%), Positives = 236/482 (48%), Gaps = 64/482 (13%)
Query: 6 KKSMPVLP-WMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIG 64
K VLP W+ P+ V L + +L LQ I+ F VQ AV +
Sbjct: 104 KNITSVLPKWLAEPITVDPNTTVEFSSL-NISSKLVERLQKQNITRGFAVQAAVLPLLLQ 162
Query: 65 PGL------FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK 118
G + D+C+++ TGSGKTLSY +PIVQ LS+R V LR +V++PTR+L +QV
Sbjct: 163 DGRHGPMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTVQVA 222
Query: 119 DVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVA 178
F GL V GQ S+ E +L E + +D+LV+
Sbjct: 223 KTFEYYMSGAGLQVCAWTGQKSLRHETYQLNG----------------DENECRIDVLVS 266
Query: 179 TPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRS----DNENRFS 234
TPGRL+DHI F+L+HL Y+V+DE DRLL +++Q W+ TV+ N++
Sbjct: 267 TPGRLVDHIRNDESFSLQHLRYMVIDEADRLLDQSFQDWVDTVMMEISHPKCLQNKSNIL 326
Query: 235 D-----ASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH 289
D + TFLP +L R P P L K+V SATLT+DP+K+A L LH
Sbjct: 327 DLDQNISPTFLPD-IDTLLPYRL----------PSP-LQKLVFSATLTRDPSKIASLKLH 374
Query: 290 HPLFLTT----------GETR-----YKLPERLESYKLICESKLKPLYLVALLQSLGEEK 334
+P + GE + +P L+ Y + S+ KP+ L L+ S
Sbjct: 375 NPRLVLVQNKDMEVDDGGEIEDDAIVFSVPPTLQEYHVSVSSE-KPILLYHLIHSKNLTN 433
Query: 335 CIVFTSSVEST---HRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVS 391
+ F S E+ HRL L++ ++ + R K + F G + +LV
Sbjct: 434 ILCFVKSNEAAARLHRLLELIHESLNQSFSCGLFTSSLSRDERKKIISRFATGDLNLLVC 493
Query: 392 SDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLL 451
SD M RG+DV NV+NYD P +++Y+HR GRTARAG+ G +TL+ E F KL+
Sbjct: 494 SDLMARGIDVANTQNVINYDPPLSVRSYVHRIGRTARAGREGFAWTLVQSHEGHHFSKLV 553
Query: 452 QK 453
++
Sbjct: 554 KQ 555
>gi|296423635|ref|XP_002841359.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637596|emb|CAZ85550.1| unnamed protein product [Tuber melanosporum]
Length = 627
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 155/464 (33%), Positives = 234/464 (50%), Gaps = 89/464 (19%)
Query: 1 MEEAKKKSMPV---LP-WMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQV 56
+ +A K +P+ LP W+ +P+ V P + C+ +L L + ++S FPVQ
Sbjct: 196 LTKAAKPQIPLSSALPQWLANPITVDPSRTQPFSEITCVSQKLHSRLSALSMTSAFPVQS 255
Query: 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116
AV + P D+CI++ TGSGKTL+Y LPIVQ LS R V LRA++V+PTR+L Q
Sbjct: 256 AVIPLLLSPD--SGDICISAATGSGKTLAYVLPIVQALSTRVVTRLRAVIVVPTRELVSQ 313
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDIL 176
V V +++ L +G AVG ++ E ++L+ E G S +D+L
Sbjct: 314 VHSVACSLSTGNSLKIGTAVGSKALPLEQAQLVG----EGG----------NGGSKIDVL 359
Query: 177 VATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL-QLTRSD---NENR 232
V TPGRL++HI T+GFTL+ L +LV+DE DRLL +++Q W+ T++ ++ R D E +
Sbjct: 360 VCTPGRLVEHIKTTKGFTLKFLRWLVIDEADRLLAQSFQEWVSTLIGEIERVDVSAQEEK 419
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPY-PRLVKMVLSATLTQDPNKLAQLDLHHP 291
F+ L G + KP R+ K+VLSAT+T+D KL+ L L P
Sbjct: 420 FNSVLEDL-----------------GIRLKPPGSRVRKVVLSATMTRDAGKLSDLKLRKP 462
Query: 292 LFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTL 351
+ T I+FTSS + RL TL
Sbjct: 463 SMIAT---------------------------------------IIFTSSNSTATRLSTL 483
Query: 352 LNHFGELRIKIKEYSGLQRQSVRSKT--------LKAFREGKIQVLVSSDAMTRGMDVEG 403
L+ F + + + S+T + AF +G+ +LV SD + RG+D+E
Sbjct: 484 LSTFSSHPAAPPPATSWITKCITSETPRKQRARYIHAFTKGEAGILVCSDLVARGLDIEN 543
Query: 404 VNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 447
V V+NY+ PA ++ Y+HR GRTARAG+ G +L+ + E F
Sbjct: 544 VAIVINYEVPASVRGYVHRVGRTARAGRNGVAVSLVGEKEAGWF 587
>gi|427792293|gb|JAA61598.1| Putative atp-dependent rna helicase, partial [Rhipicephalus
pulchellus]
Length = 783
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 161/462 (34%), Positives = 232/462 (50%), Gaps = 65/462 (14%)
Query: 48 ISSLFPVQ--VAVW---QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCL 102
I LFPVQ V W E L RD+C+++PTGSGKTL+Y +PI++ L R VR +
Sbjct: 320 IRKLFPVQEKVVPWLLSSEQRRSHLPPRDICVSAPTGSGKTLAYVIPIIEDLKVRVVRAV 379
Query: 103 RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDP 162
RA+VVLP ++LA QV VF L+V L G + A+E L+++
Sbjct: 380 RAVVVLPVKELAAQVHAVFLQYVGTTSLNVQLVTGTRTFAEEQGLLVRKG---------- 429
Query: 163 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 222
+ S VDI+VATPGRL+DHI T GF L L Y V+DE DR++ + +P V
Sbjct: 430 ---AKGYASLVDIVVATPGRLLDHIRKTPGFNLHLLKYFVLDEADRVIEDVQTTLIPEVE 486
Query: 223 QLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLV-----------KMV 271
Q + FG+ K CG + +P V K++
Sbjct: 487 Q------------------AVFGTSKMNCTCGSTVHNRLCTHPLTVCSLQHCREPVQKLL 528
Query: 272 LSATLTQDPNKLAQLDLHHP-LFLTTGET--------------RYKLPERLESYKLICES 316
SATLTQDP+KL L L P LF T +Y P+ L + +
Sbjct: 529 YSATLTQDPDKLQSLMLFQPKLFTATAAVSMPGDEQRQKTFVGKYTTPQGLSEFYYLTHD 588
Query: 317 KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSK 376
KPL + L+ + G + FT+S E HRL +L G +R + E+S + R++
Sbjct: 589 NTKPLAVWDLVANHGFRDTLCFTASKEDAHRLSLVLKEMGSIRAE--EFSAKLSIADRAR 646
Query: 377 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCF 436
L+ F GK+ +LV S+ + RG+DV V +V+ YD P +IKTY+HR GRTARAG G
Sbjct: 647 VLRKFASGKLDILVCSNVLARGLDVANVRHVICYDPPKFIKTYVHRVGRTARAGVPGTAV 706
Query: 437 TLLHKDEVKRFKKLLQKA-DNDSCPIHSIPSSLIESLRPVYK 477
T L + +++ FK++L A D P+ + +E+L+ Y+
Sbjct: 707 TFLRQGQLQAFKEMLSSAGKTDIQPLDLSNTDELEALQSKYR 748
>gi|241751464|ref|XP_002406051.1| DEAD box ATP-dependent RNA helicase, putative [Ixodes scapularis]
gi|215506028|gb|EEC15522.1| DEAD box ATP-dependent RNA helicase, putative [Ixodes scapularis]
Length = 393
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 141/435 (32%), Positives = 211/435 (48%), Gaps = 74/435 (17%)
Query: 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129
RD+C+++PTGSGKTL+Y +PIV++L R +R +RA+VVLP ++LA QV+ VF
Sbjct: 4 RDICVSAPTGSGKTLAYVIPIVESLKPRIMRAIRAVVVLPVKELAAQVQAVFQQYLRGTS 63
Query: 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA 189
L L G ++E L+ + + S VDI+VATPGRL+DHI
Sbjct: 64 LRSQLVTGTKPFSEEQLSLVHKNA-------------RGYSSLVDIIVATPGRLLDHIRK 110
Query: 190 TRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKT 249
T GF+L L + V+DE DR++ + +P V Q
Sbjct: 111 TPGFSLHLLKFFVLDEADRVIEDVRTTLIPEVEQAVEPAQ-------------------- 150
Query: 250 IRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP-LFLTTGET--------- 299
K++ SATLTQDP KL L L P LF G+
Sbjct: 151 -------------------KLLYSATLTQDPEKLQSLMLFQPKLFTAAGKRDPAVERAAF 191
Query: 300 --RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 357
+Y P+ L + + ++ KPL L L+ + G + FT + + HRLC ++ G
Sbjct: 192 AGKYTTPQGLSEFYRVVQNAKKPLALWDLVANRGYTGTLCFTGTKDDAHRLCLVIKEMGG 251
Query: 358 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417
+R++ E+S + R++ L+ F G + +LV S+ + RG+DV V NVV YD P Y+K
Sbjct: 252 VRVE--EFSSDLSATERARVLRRFASGGLDLLVCSNVLARGLDVANVRNVVCYDPPKYVK 309
Query: 418 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSS------LIES 471
TY+HR GRTARAG G T L + +++ F+ +L A P+ ++ E
Sbjct: 310 TYVHRVGRTARAGVPGTAVTFLRQGQLEAFQTMLSSAGKS--PVEALEEGEAGLEVFHEK 367
Query: 472 LRPVYKSVRGGISDE 486
R K+V + E
Sbjct: 368 YRVALKAVEAAVGRE 382
>gi|152013488|sp|A2QA23.1|DBP6_ASPNC RecName: Full=ATP-dependent RNA helicase dbp6
gi|134055529|emb|CAK37175.1| unnamed protein product [Aspergillus niger]
Length = 593
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 177/471 (37%), Positives = 243/471 (51%), Gaps = 53/471 (11%)
Query: 8 SMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETI-GPG 66
S+P PW+ +P+ S E L +D L L++ G F VQ V + GP
Sbjct: 104 SLP--PWLANPLRASAQERRKFADL-GIDSSLLRVLEDNGYREAFAVQSTVIPLLLQGPT 160
Query: 67 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126
DLCI++ TGSGKTLSY LP+V L LR L+V+PTR+L Q ++ A
Sbjct: 161 NHPGDLCISAATGSGKTLSYVLPLVTALKPLPAPRLRGLIVVPTRELVKQAREACELCAA 220
Query: 127 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDH 186
GL V AVG +I DE E + G + E VDIL+ TPGRL+DH
Sbjct: 221 GSGLRVASAVGNVAIKDEQRESL------PGYVHRSE-------PNVDILICTPGRLVDH 267
Query: 187 INATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFG- 245
+ T+GFTL++L +LV+DE DRLL E++Q W+ V+ S + P AFG
Sbjct: 268 LRYTKGFTLKNLEWLVIDEADRLLNESFQEWVDVVMT----------SLDARKAPDAFGF 317
Query: 246 SLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG-------- 297
S + G+ K+ PR K+VLSAT+T+D KL L L +P + G
Sbjct: 318 SGNFLSGLGLPIQSKE---PR--KVVLSATMTRDVTKLNSLRLANPKLVVIGSDAAATED 372
Query: 298 --------ETRYKLPERLESYKL-ICESKLKPLYLVALLQS--LGEEKCIVFTSSVESTH 346
+ ++ LP LE + + + + KPLYL+ LL S E K +VFT S ES
Sbjct: 373 ESGGVAPSDEQFTLPPTLEEHTVSVGDGSQKPLYLLRLLLSHIKLETKILVFTKSSESAS 432
Query: 347 RLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN 405
RL LL L +I + S KTL A+R GKI V++++D +RG+D+ +
Sbjct: 433 RLARLLALLEPSLSDRIGTIIKSNKSSASRKTLTAYRRGKISVIIATDRASRGLDLRSLT 492
Query: 406 NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 456
+VVNYD PA I TY+HR GRTARAGQ G +TL+ E K F + K +
Sbjct: 493 HVVNYDVPASITTYVHRVGRTARAGQKGSAWTLVAHREGKWFASQIAKGSD 543
>gi|294949064|ref|XP_002786034.1| ATP-dependent RNA helicase DBP6, putative [Perkinsus marinus ATCC
50983]
gi|239900142|gb|EER17830.1| ATP-dependent RNA helicase DBP6, putative [Perkinsus marinus ATCC
50983]
Length = 559
Score = 219 bits (557), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 166/481 (34%), Positives = 233/481 (48%), Gaps = 85/481 (17%)
Query: 21 VSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIG------PGLFERDLCI 74
+S EDCP L + AL+ MGIS LFPVQ V +G ++ DLC+
Sbjct: 66 LSSIEDCPSVTEFELSKTCRKALKGMGISRLFPVQATVLPIVLGRVRTPVGSRYDCDLCV 125
Query: 75 NSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV-GLSVG 133
PTG GKTL Y LPI Q LS+R + LRALV+ PTRDLALQVK+V V
Sbjct: 126 AVPTGQGKTLGYLLPIFQLLSHRKYQTLRALVLAPTRDLALQVKEVADHFTGGKDNFKVD 185
Query: 134 LAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193
VGQ A +E E G P D+LVATP R +D I R
Sbjct: 186 CVVGQYH-AQTFAE-------EDGSSAGP-----------DVLVATPSRALDLITGER-V 225
Query: 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRC 253
++ + ++V+DE DRLL + +A + V R +AS
Sbjct: 226 PVDGIRWMVLDEADRLLNSSREATVEVV---------RRVMEAS---------------- 260
Query: 254 GVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET-RYKLPERLESYKL 312
PR +M+ SAT+T +P KLAQL L P FL + +T + PE L +
Sbjct: 261 -----------PRCQRMLFSATMTSNPQKLAQLALSRPFFLLSTQTGAHATPENLRHRFV 309
Query: 313 ICES-KLKPLYLVALL-------QSLGEEKCIVFTSSVESTHRL------CTLLNHFGEL 358
+ + + KP LV++L S + ++F SVE HRL C + N +
Sbjct: 310 VARAEQKKPGVLVSILGEIYPPTASEATSRTMIFCGSVEHAHRLTRLLQICVVGNENIKE 369
Query: 359 RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKT 418
IKI+E+S Q R + L+AFR G+I VLV SD RG+D V++V+ YD P ++
Sbjct: 370 GIKIREFSAALNQKQRVRLLEAFRTGRIHVLVCSDVAARGLDFREVDHVLQYDVPNNVQG 429
Query: 419 YIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKS 478
YIHR GR RAG+ G T+L +VK FK +L++ + ++ +E ++PV +
Sbjct: 430 YIHRCGRAGRAGRQGCSSTILVGKQVKHFKDMLREEE-------AVTMDKLEQMKPVVED 482
Query: 479 V 479
+
Sbjct: 483 I 483
>gi|167536143|ref|XP_001749744.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771892|gb|EDQ85553.1| predicted protein [Monosiga brevicollis MX1]
Length = 2519
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 147/429 (34%), Positives = 219/429 (51%), Gaps = 73/429 (17%)
Query: 34 CLDPRLKVALQNMGISSLFPVQ-------VAVWQETIGPGLFERDLCINSPTGSGKTLSY 86
L P L+ A+Q + +LFP+Q +A W PG D C+ +PTGSGKTL Y
Sbjct: 177 ALHPELQRAMQRRDMKTLFPLQRAMVPRLIASWNAAGHPG----DFCVCAPTGSGKTLCY 232
Query: 87 ALPIVQTLSNRAVRCLRALVVLPTRDLALQV----KDVFAAIAPAVG---LSVGLAVGQS 139
LPI+ L+ R +RAL+VLPTR LALQV +D+ A G L V GQ+
Sbjct: 233 LLPILHLLAERVTPRIRALIVLPTRQLALQVVRVARDLLGASQLCAGREPLRVAALTGQT 292
Query: 140 SIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHL- 198
S++ E + +LQE ++DI+VATPGRL+DH++ T G + L
Sbjct: 293 SLSQE------------------QKLLQE--QSIDIVVATPGRLVDHLHQT-GKEMGALG 331
Query: 199 -CYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVER 257
C+ + LL ++YQ+WL + + E+ SD + F + T
Sbjct: 332 ACFQPI-----LLTQSYQSWLEALRKALYRGRES--SDPMNMTLTRFHAEGT-------- 376
Query: 258 GFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET-------RYKLPERLESY 310
RL +++ SATLT+DP KL L L P + + +P ++ Y
Sbjct: 377 --------RLQQLLFSATLTRDPEKLEPLRLAFPTMVIASSAHQDDANGKSTIPRSIDEY 428
Query: 311 KLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQR 370
+ C + +PL L++LL ++ ++F S++ + R+ LL +F EL + E S Q
Sbjct: 429 TVSCTATERPLVLLSLLIGFQMQRVLIFVSALNTAKRVTALLQYFDEL--SVAEVSSSQS 486
Query: 371 QSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG 430
Q ++ LK F G++ VLV SD M RG+D++ V V++YD PA+ KTYIHR GR RAG
Sbjct: 487 QQENTRALKQFAAGELSVLVCSDNMARGIDIKNVETVISYDAPAFPKTYIHRVGRVGRAG 546
Query: 431 QLGRCFTLL 439
G +TL+
Sbjct: 547 AHGEAYTLV 555
>gi|149235381|ref|XP_001523569.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|152013489|sp|A5E726.1|DBP6_LODEL RecName: Full=ATP-dependent RNA helicase DBP6
gi|146452978|gb|EDK47234.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 663
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 154/466 (33%), Positives = 235/466 (50%), Gaps = 78/466 (16%)
Query: 12 LPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQE--------TI 63
L W+ +P +++ + P P L P + L+++G + F VQV V + +
Sbjct: 207 LDWLTTPEYIAIADTKPFSEFP-LSPFMHENLESLGFENAFAVQVGVLSKLLPEIQANKL 265
Query: 64 GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123
P F D+ +N+ TGSGKTL+Y++PI+++L +R V +RA+V++PT+ L QV+
Sbjct: 266 RPDAFG-DVLVNASTGSGKTLAYSIPIIESLKDRVVPRVRAIVLVPTKPLINQVRATMLQ 324
Query: 124 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL 183
+A L++ SI +E LI + D++++TPGRL
Sbjct: 325 LALGTNLNIVSLKNDISIREESERLI--------------------ELVPDVVISTPGRL 364
Query: 184 MDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSA 243
++H+ A +L L YLVVDE DRLL +++Q W ++ ++ + +
Sbjct: 365 VEHL-AMDSISLSSLRYLVVDEADRLLNQSFQNWSQILI--------SKIHLQQVYDVAN 415
Query: 244 FGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR--- 300
SLK + K + SATLT D KLA LD H+P L +++
Sbjct: 416 VWSLK------------------VQKFIFSATLTTDAGKLASLDFHNPRLLIVNDSQRLV 457
Query: 301 ---YKLPERLESYKL---ICESKLKPLYLVALLQSLGEEK---CIVFTSSVESTHRLCTL 351
+ +P L YKL + +S LKPL L L + +EK +VFT S ES+ RLCTL
Sbjct: 458 NELFSVPAMLSEYKLNFGVAKSSLKPLILAKFL--IAQEKLSDVLVFTKSNESSIRLCTL 515
Query: 352 LNH-FGELRIKIKEYSGL-----QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN 405
L F + ++ K G R S+RSK LK F KI +LV++D + RG+DV +
Sbjct: 516 LQAIFDRICLQEKVKVGFMNLTNNRTSLRSKILKDFTSQKINILVATDLIARGLDVTSIK 575
Query: 406 NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH-KDEVKRFKKL 450
+VVNYD + Y+HR GRTARA Q G + L+ K E K FK +
Sbjct: 576 DVVNYDLLNSSREYVHRVGRTARANQAGNAYNLVFGKGEEKWFKTI 621
>gi|353232410|emb|CCD79765.1| putative dead box ATP-dependent RNA helicase [Schistosoma mansoni]
Length = 603
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 170/531 (32%), Positives = 243/531 (45%), Gaps = 105/531 (19%)
Query: 2 EEAKKKS---MPVLP-WMRSP--VDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQ 55
E+ K K+ VLP W+ P L + ++ + + L++ L +GI+ FPVQ
Sbjct: 20 EKTKSKAHNVQEVLPFWITKPELFSSDLKQSLSVNEVAKIGEFLRLRLSEIGITHFFPVQ 79
Query: 56 VAV--------WQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVV 107
AV + P RD+CI +PTGSGKTL+YA+PI+Q NR R +RAL++
Sbjct: 80 SAVIPYMLDCYFTSKHRPLCRPRDICICAPTGSGKTLAYAVPIIQLFLNRVHRFIRALII 139
Query: 108 LPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQ 167
+P RDLA+QV F+ + + VG+ G S + E ++I +
Sbjct: 140 VPVRDLAVQVYKTFSQLVNGTDIQVGVLAGIKSFSKEQEDIINLTNESYSV--------- 190
Query: 168 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL--- 224
VDI++ATPGRL+DH+ T GF++E L LV+DE DR++ E Q W T+ +
Sbjct: 191 ----KVDIVIATPGRLVDHLYNTPGFSMERLRILVIDEADRVIVEEKQNWYHTLEDVLYY 246
Query: 225 -TRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPR-----LVKMVLSATLTQ 278
T S N+N +S+ S S + I G Y R L K+++SATLT
Sbjct: 247 YTSSTNQNSWSNVSVRKRS-----RPIPTVGYH-------YDRSVDITLQKILVSATLTH 294
Query: 279 DPNKLAQLDLHHPLFLTTGETRY--------------------------KLPERLESYKL 312
DP L Q +L+ P+ T+ R+ K E E +
Sbjct: 295 DPEPLKQFNLYFPILFTSNRIRHDENHIDAVPHDHKNAENNSSEIKKQEKCDENREIPNV 354
Query: 313 ICESK-------------------------LKPLYLVALLQSLGEEK----CIVFTSSVE 343
I K KP V L L +K + F ++V+
Sbjct: 355 ISHVKSSENHTTAGVGQFMVPESLEEFLVTAKPDIRVLFLVYLVRQKHKKRILCFANTVD 414
Query: 344 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG 403
RL LL F IK K S R + L F G+ Q+LV +D+M RG+D+
Sbjct: 415 CAKRLNMLLASFKG--IKSKFLSSHLHPDKRQRILNLFSVGQCQILVCTDSMARGIDIND 472
Query: 404 VNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 454
V VV+YD P IK YIHR GRTARAG+ G + LL ++ FKK L+ A
Sbjct: 473 VECVVSYDVPPSIKIYIHRIGRTARAGKKGTAYNLLSTNQFYHFKKDLKLA 523
>gi|256075757|ref|XP_002574183.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
Length = 837
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 169/531 (31%), Positives = 245/531 (46%), Gaps = 105/531 (19%)
Query: 2 EEAKKKS---MPVLP-WMRSP--VDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQ 55
E+ K K+ VLP W+ P L + ++ + + L++ L +GI+ FPVQ
Sbjct: 20 EKTKSKAHNVQEVLPFWITKPELFSSDLKQSLSVNEVAKIGEFLRLRLSEIGITHFFPVQ 79
Query: 56 VAV--------WQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVV 107
AV + P RD+CI +PTGSGKTL+YA+PI+Q NR R +RAL++
Sbjct: 80 SAVIPYMLDCYFTSKHRPLCRPRDICICAPTGSGKTLAYAVPIIQLFLNRVHRFIRALII 139
Query: 108 LPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQ 167
+P RDLA+QV F+ + + VG+ G S + E ++I +
Sbjct: 140 VPVRDLAVQVYKTFSQLVNGTDIQVGVLAGIKSFSKEQEDIINLTNESYSV--------- 190
Query: 168 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT----VLQ 223
VDI++ATPGRL+DH+ T GF++E L LV+DE DR++ E Q W T +
Sbjct: 191 ----KVDIVIATPGRLVDHLYNTPGFSMERLRILVIDEADRVIVEEKQNWYHTLEDVLYY 246
Query: 224 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPR-----LVKMVLSATLTQ 278
T S N+N +S+ S S + I G Y R L K+++SATLT
Sbjct: 247 YTSSTNQNSWSNVSVRKRS-----RPIPTVGYH-------YDRSVDITLQKILVSATLTH 294
Query: 279 DPNKLAQLDLHHPLFLTTGETRY--------------------------------KLPER 306
DP L Q +L+ P+ T+ R+ ++P
Sbjct: 295 DPEPLKQFNLYFPILFTSNRIRHDENHIDAVPHDHKNAENNSSEIKKQEKCDENREIPNV 354
Query: 307 LESYK-------------LICES------KLKPLYLVALLQSLGEEK----CIVFTSSVE 343
+ K ++ ES KP V L L +K + F ++V+
Sbjct: 355 ISHVKSSENHTTAGVGQFMVPESLEEFLVTAKPDIRVLFLVYLVRQKHKKRILCFANTVD 414
Query: 344 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG 403
RL LL F IK K S R + L F G+ Q+LV +D+M RG+D+
Sbjct: 415 CAKRLNMLLASFKG--IKSKFLSSHLHPDKRQRILNLFSVGQCQILVCTDSMARGIDIND 472
Query: 404 VNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 454
V VV+YD P IK YIHR GRTARAG+ G + LL ++ FKK L+ A
Sbjct: 473 VECVVSYDVPPSIKIYIHRIGRTARAGKKGTAYNLLSTNQFYHFKKDLKLA 523
>gi|1749726|dbj|BAA13920.1| unnamed protein product [Schizosaccharomyces pombe]
Length = 490
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 151/444 (34%), Positives = 219/444 (49%), Gaps = 62/444 (13%)
Query: 43 LQNMGISSLFPVQVAVWQETIGPGL------FERDLCINSPTGSGKTLSYALPIVQTLSN 96
LQ I+ F VQ AV + G + D+C+++ TGSGKTLSY +PIVQ LS+
Sbjct: 27 LQKQNITRGFAVQAAVLPLLLQDGRHGPMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSH 86
Query: 97 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 156
R V LR +V++PTR+L +QV F GL V GQ S+ E +L
Sbjct: 87 RTVPRLRCVVIVPTRELTVQVAKTFEYYMSGAGLQVCAWTGQKSLRHETYQLNG------ 140
Query: 157 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 216
E + +D+LV+TPGRL+DHI F+L+HL Y+V+DE DRLL +++Q
Sbjct: 141 ----------DENECRIDVLVSTPGRLVDHIRNDESFSLQHLRYMVIDEADRLLDQSFQD 190
Query: 217 WLPTVLQLTRS----DNENRFSD-----ASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
W+ TV+ N++ D + TFLP +L R P P L
Sbjct: 191 WVDTVMMEISHPKCLQNKSNILDLDQNISPTFLPD-IDTLLPYRL----------PSP-L 238
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTT----------GETR-----YKLPERLESYKL 312
K+V SATLT+DP+K+A L LH+P + GE +P L+ Y +
Sbjct: 239 QKLVFSATLTRDPSKIASLKLHNPRLVLVQNKDMEVDDGGEIEDDAIVLSVPPTLQEYHV 298
Query: 313 ICESKLKPLYLVALLQSLGEEKCIVFTSSVEST---HRLCTLLNHFGELRIKIKEYSGLQ 369
S+ KP+ L L+ S + F S E+ HRL L++ ++
Sbjct: 299 SVSSE-KPILLYHLIHSKNLTNILCFVKSNEAAARLHRLLELIHESLNQSFSCGLFTSSL 357
Query: 370 RQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA 429
+ R K + F G + +LV SD M RG+ NV+NYD P +++Y+HR G TARA
Sbjct: 358 SRDERKKIISWFATGDLNLLVCSDLMARGIHFSNTQNVINYDPPFSVRSYVHRIGPTARA 417
Query: 430 GQLGRCFTLLHKDEVKRFKKLLQK 453
G+ G +TL+ E F KL+++
Sbjct: 418 GREGFAWTLVQSHEGHHFSKLVKQ 441
>gi|294901652|ref|XP_002777458.1| ATP-dependent RNA helicase DBP6, putative [Perkinsus marinus ATCC
50983]
gi|239885094|gb|EER09274.1| ATP-dependent RNA helicase DBP6, putative [Perkinsus marinus ATCC
50983]
Length = 559
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 167/481 (34%), Positives = 231/481 (48%), Gaps = 85/481 (17%)
Query: 21 VSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIG------PGLFERDLCI 74
+S EDCP L + AL+ MGIS LFPVQ V +G ++ DLC+
Sbjct: 66 LSSIEDCPSVTEFELSKTCRKALKGMGISRLFPVQATVLPIVLGRVRTPVGSRYDCDLCV 125
Query: 75 NSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV-GLSVG 133
PTG GKTL Y LPI Q LS+R + LRALV+ PTRDLALQVK+V V
Sbjct: 126 AVPTGQGKTLGYLLPIFQLLSHRKYQTLRALVLAPTRDLALQVKEVADHFTGGKDSFRVD 185
Query: 134 LAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193
VGQ A +E E G P D+LVATP R +D I R
Sbjct: 186 CVVGQYH-AQTFAE-------EDGSSAGP-----------DVLVATPSRALDLITGER-V 225
Query: 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRC 253
++ + ++V+DE DRLL + +A + V R +AS
Sbjct: 226 PVDGIRWMVLDEADRLLNSSREATVEVV---------RRVMEAS---------------- 260
Query: 254 GVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET-RYKLPERLESYKL 312
PR +M+ SAT+T +P KLAQL L P FL +T + PE L +
Sbjct: 261 -----------PRCQRMLFSATMTSNPQKLAQLALSRPFFLLGTQTGAHATPENLRHRFV 309
Query: 313 ICES-KLKPLYLVALL-------QSLGEEKCIVFTSSVESTHRLCTLL------NHFGEL 358
+ + + KP LV++L S + ++F SVE HRL LL N +
Sbjct: 310 VARAEQKKPGVLVSILGEIYPPTASEATSRTMIFCGSVEHAHRLARLLQIYVVGNENIKE 369
Query: 359 RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKT 418
IKI+E+S Q R + L+AFR G+I VLV SD RG+D V++V+ YD P ++
Sbjct: 370 GIKIREFSAALNQKQRVRLLEAFRTGRIHVLVCSDVAARGLDFREVDHVLQYDVPNNVQG 429
Query: 419 YIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKS 478
YIHR GR RAG+ G T+L +VK FK +L++ ++ +E ++PV +
Sbjct: 430 YIHRCGRAGRAGREGCSSTILVGKQVKHFKDMLREE-------KAVTMDKLEQMKPVVED 482
Query: 479 V 479
+
Sbjct: 483 I 483
>gi|452002280|gb|EMD94738.1| hypothetical protein COCHEDRAFT_1048087, partial [Cochliobolus
heterostrophus C5]
Length = 604
Score = 215 bits (548), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 154/531 (29%), Positives = 246/531 (46%), Gaps = 100/531 (18%)
Query: 14 WMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFER--D 71
W+ P + + P L +D L+ G + VQ A+ + PG + D
Sbjct: 86 WLAQPTTIEASKTVPFSEL-GVDATYVKKLEKQGFKNALAVQTALL-PMLHPGFDQHLGD 143
Query: 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLS 131
+C+++ TGSGKTL+Y LPI++ L +RAV L A++V+P+R L Q V + +
Sbjct: 144 ICVSAKTGSGKTLAYLLPIIEALKDRAVPILSAIIVVPSRQLVNQALQVAEELCAGTRIK 203
Query: 132 VGLAVGQSSIADEISELIKR-----PK-----------------LEAGICYDPEDVLQ-- 167
VG A+G + A E +L+K PK +E G YD +
Sbjct: 204 VGTALGNVAFATEQKQLVKMRAQYDPKRAQELNEKASQQYQTGLMERGGPYDDLKKMSLG 263
Query: 168 ---ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224
+ S VDIL+ TPGRL++HI T GF L ++ +LV+DE D+LL + +Q W ++
Sbjct: 264 HVPKYDSGVDILICTPGRLVEHIEHTTGFLLNNVRWLVIDEADQLLNQNFQGWASVLMDA 323
Query: 225 TRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 284
+ F +A + + + P +++K+VLSAT+ +D +KL
Sbjct: 324 VHGETRPEFMNARERMAKQVRDANSAWSVAL-------PQRQVIKVVLSATMEKDVSKLG 376
Query: 285 QLDLHHPLF------------LTTGETRYKLPERLESYKL-ICESKLKPLYLVALL---- 327
L L P L T + ++LP RLE + + + + KPL+L+ +L
Sbjct: 377 TLKLRRPKLVVVQDASTELQPLETEDNVFELPSRLEEFAVHVGDGANKPLHLLHVLLSFV 436
Query: 328 ------------------------------------QSLGEE--KCIVFTSSVESTHRLC 349
S+ ++ + ++FT S ES RL
Sbjct: 437 FAEKHEDADSSSDSDSSDSSSDSSSDSDSDAGQVSAASMSQQTGRVLIFTKSTESASRLS 496
Query: 350 TLLNHFGELRIKIKEYSGLQRQSVRS----KTLKAFREGKIQVLVSSDAMTRGMDVEGVN 405
LL L K Y +++ + K LK+F G I++L++SDA +RG+D+ +
Sbjct: 497 HLLR---ALMPGFKNYLQTMTRALTADASRKLLKSFSSGTIKILIASDAASRGLDIPDIT 553
Query: 406 NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 456
+V+NYD P I +Y+HR GRTARAG+ G+ +TL K E F K + K D+
Sbjct: 554 HVINYDLPTSITSYVHRVGRTARAGKAGQAWTLFSKTEAAWFLKQIAKGDS 604
>gi|293334099|ref|NP_001169826.1| uncharacterized protein LOC100383718 [Zea mays]
gi|224031859|gb|ACN35005.1| unknown [Zea mays]
Length = 174
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 112/177 (63%), Positives = 132/177 (74%), Gaps = 7/177 (3%)
Query: 128 VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHI 187
VGLSVG AVGQSSIADE+S L+ +PK E D E V E Q+ +DILVATP RLMDHI
Sbjct: 2 VGLSVGSAVGQSSIADEVSSLVPKPKQEFYPTIDEEYVQMEPQTKIDILVATPERLMDHI 61
Query: 188 NATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS---DASTFLPSAF 244
N T GF+LEHL YLV+DETDR++REAYQ+WLPTV+QLT S ++ D+ T L
Sbjct: 62 NMTNGFSLEHLQYLVIDETDRMVREAYQSWLPTVIQLTHSISQGHSWHDIDSQTLL---- 117
Query: 245 GSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRY 301
L +IRR GVER FK K YPRL KMVLSATLTQDP+KL+QL+LHHPL L +G+ RY
Sbjct: 118 HPLTSIRRSGVERVFKGKCYPRLGKMVLSATLTQDPSKLSQLELHHPLLLNSGKKRY 174
>gi|213407706|ref|XP_002174624.1| ATP-dependent RNA helicase dbp6 [Schizosaccharomyces japonicus
yFS275]
gi|212002671|gb|EEB08331.1| ATP-dependent RNA helicase dbp6 [Schizosaccharomyces japonicus
yFS275]
Length = 570
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 164/502 (32%), Positives = 243/502 (48%), Gaps = 83/502 (16%)
Query: 2 EEAKKKSMPVLP-WMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVW- 59
++ + +S+ LP W+ +P V+ L L RL L I+ F VQ V
Sbjct: 58 DKKRTRSLQALPDWIANPTVVAPSTTVQFAEL-GLSKRLVELLAQNNITQGFAVQAGVIP 116
Query: 60 ----------QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109
Q PG DLC+++ TGSGKTL+Y LPI++ L V LR VV+P
Sbjct: 117 LLLQSSNKSIQRAHAPG----DLCVSAATGSGKTLAYVLPIIECLRTCIVTRLRCAVVVP 172
Query: 110 TRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL 169
T++L +QV F L V GQ S+A E S L P + I
Sbjct: 173 TKELVVQVAKSFEQYCSGTKLRVCALTGQRSLAFEQS-LFLSPNGKDYIA---------- 221
Query: 170 QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWL---------PT 220
DI+V TPGR +DHI +T FTL+HL YLVVDE DRLL +++Q W+ P
Sbjct: 222 ----DIMVTTPGRFVDHIRSTPNFTLQHLRYLVVDEADRLLDQSFQGWVNAVMEELERPK 277
Query: 221 VLQ------------LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLV 268
VLQ L +D+ + + AST+LP+ + T+ K P L
Sbjct: 278 VLQGIDMHGLSGIERLPGADSNSGCNIASTYLPN----MPTL--------LPQKTAPCLQ 325
Query: 269 KMVLSATLTQDPNKLAQLDLHHPLFLTTGETR--------------YKLPERLESYKLIC 314
K+V SATLT++P K++ L L P L + + LP L+ + +
Sbjct: 326 KLVFSATLTRNPAKISALRLVRPRLLVVQDPSVSMEPDGDEEDTVLFSLPAALQEHHVGV 385
Query: 315 ESKLKPLYLVALLQSLGEEKCIVFTSSVEST---HRLCTLLNHFGELRIKIKEYSGLQRQ 371
++ KPL L LL++ + + FT S ES +RL LL+ +++ ++G+ +
Sbjct: 386 TAE-KPLLLYHLLRTQQLQNTLCFTKSNESAARLYRLLELLDKGSSEPLRVGLFAGILTR 444
Query: 372 SVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ 431
+ R + L F E +Q+LV SD M RG+D+ NV+NYD P+ + Y+HR GR ARAG+
Sbjct: 445 ADRRRILTQFAESNLQLLVCSDLMARGVDLPSTENVINYDPPSGTRQYVHRIGRCARAGR 504
Query: 432 LGRCFTLLHKDEVKRFKKLLQK 453
G +TL+ E F ++++
Sbjct: 505 EGHAWTLVQDHEGFHFSSIVRR 526
>gi|255726860|ref|XP_002548356.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240134280|gb|EER33835.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 608
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 154/467 (32%), Positives = 231/467 (49%), Gaps = 74/467 (15%)
Query: 9 MPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIG---- 64
M L W+ P +S + P + L P + L+NMG SS F VQV+V I
Sbjct: 153 MKNLDWLTEPQYISPSDTKPFNEF-QLSPFMINNLENMGFSSAFAVQVSVLDMMIPEIKA 211
Query: 65 ----PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV 120
P F D+ +N+ TGSGKTL+Y++PI+++L R V +RA++++PT+ L QVK
Sbjct: 212 HKLMPDPF-GDILVNASTGSGKTLAYSIPIIESLHKRVVPRVRAIILVPTKPLINQVKAT 270
Query: 121 FAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180
F ++ L V SI DE +L+K S DI+V+TP
Sbjct: 271 FLQLSSGTNLQVMALKNDISINDE-KQLLK-------------------NSIPDIIVSTP 310
Query: 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFL 240
GRL++H+ +L L YLV+DE DRLL +++Q W +L +R + A
Sbjct: 311 GRLVEHL-IGDSISLSSLQYLVIDEADRLLNQSFQNWSQILL--------DRMNSAI--- 358
Query: 241 PSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR 300
++ R V+ KMV SATLT D KL+ L P + +++
Sbjct: 359 -----NISEEWRLPVQ------------KMVFSATLTTDAGKLSSLKFFKPRLIIVNDSK 401
Query: 301 ------YKLPERLESYKL---ICESKLKPLYLVALLQSLGE-EKCIVFTSSVESTHRLCT 350
+ +P L YK+ + ++ LKPL L L S G+ ++FT S ES+ RL
Sbjct: 402 QLVNEIFTVPNTLSEYKIHLGVAKNSLKPLILARFLISKGKLSNVLIFTKSNESSIRLAE 461
Query: 351 LLN-HFGELRIKIKE---YSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNN 406
LL F +L I I S R +VR+K LK F I +L+++D + RG+D+ + +
Sbjct: 462 LLTILFKKLSIDINVSFINSTNNRTAVRTKILKQFSSQGINILIATDLIARGIDLTSITD 521
Query: 407 VVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL-LHKDEVKRFKKLLQ 452
V+NYD P + Y+HR GRTARA Q+G ++ K E F L++
Sbjct: 522 VINYDLPNSSREYVHRVGRTARANQVGYAYSFCFGKGENSWFTTLIK 568
>gi|451845363|gb|EMD58676.1| hypothetical protein COCSADRAFT_265142 [Cochliobolus sativus
ND90Pr]
Length = 706
Score = 209 bits (532), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 151/536 (28%), Positives = 246/536 (45%), Gaps = 110/536 (20%)
Query: 14 WMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAV-------WQETIGPG 66
W+ P + + P L +D L+ G VQ A+ + + +G
Sbjct: 143 WLAQPTTIEASKTAPFSEL-GVDATYVKKLEKQGFKDALAVQTALLPMLHLGFDQHLG-- 199
Query: 67 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126
D+C+++ TGSGKTL+Y LPI++ L +R V L A++V+P+R L Q V +
Sbjct: 200 ----DICVSAKTGSGKTLAYLLPIIEALKDRTVPILSAIIVVPSRQLVNQALQVAEELCA 255
Query: 127 AVGLSVGLAVGQSSIADEISELIKR-----PK-----------------LEAGICYD--- 161
+ VG A+G + A E +L+K PK +E+G Y+
Sbjct: 256 GTRIKVGTALGNVAFATEQKQLVKMRSQYDPKRAQELNEQASQQHQTGLMESGGLYEDLR 315
Query: 162 --PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 219
P + + S VDIL+ TPGRL++HI T GF L +L +LV+DE D+LL + +Q W
Sbjct: 316 NMPLGHVPKYDSGVDILICTPGRLVEHIEHTTGFLLNNLRWLVIDEADQLLNQNFQGWAS 375
Query: 220 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 279
++ + F +A + + + P ++ K+VLSAT+ +D
Sbjct: 376 VLMNAIHCETPCEFMNARERMAKQLRDANSAWSVAL-------PQRQVTKVVLSATMEKD 428
Query: 280 PNKLAQLDLHHPLF------------LTTGETRYKLPERLESYKL-ICESKLKPLYLVAL 326
+KL L L P L T + ++LP +LE + + + + KPL+L+ +
Sbjct: 429 LSKLGTLKLRRPKLVVVQDASTEPQPLETEDNVFELPSKLEEFAVHVGDGANKPLHLLYV 488
Query: 327 L----------------------------------------QSLGEE--KCIVFTSSVES 344
L S+ ++ + ++FT S ES
Sbjct: 489 LLNFVFTEKHEGADSSSDSDLSDSSSDSSPDDDSDAGQVSQASMSQQTGRVLIFTKSTES 548
Query: 345 THRLCTLLNHFGELRIKIKEYSGLQRQSVRS----KTLKAFREGKIQVLVSSDAMTRGMD 400
RL LL+ L K Y +++ + K LK+F G +++L++SDA +RG+D
Sbjct: 549 ASRLSHLLS---ALMPGFKNYLKTMTRALTADASRKLLKSFSSGAVKILIASDAASRGLD 605
Query: 401 VEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 456
+ + +V+NYD P I +Y+HR GRTARAG+ G+ +TL K E F K + K D+
Sbjct: 606 IPDITHVINYDLPTSITSYVHRVGRTARAGKAGQAWTLFSKTEAAWFLKQIAKGDS 661
>gi|336467903|gb|EGO56066.1| hypothetical protein NEUTE1DRAFT_83030 [Neurospora tetrasperma FGSC
2508]
gi|350289862|gb|EGZ71087.1| P-loop containing nucleoside triphosphate hydrolase protein
[Neurospora tetrasperma FGSC 2509]
Length = 684
Score = 209 bits (531), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 158/483 (32%), Positives = 238/483 (49%), Gaps = 63/483 (13%)
Query: 13 PWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDL 72
PW+ +P+ V+ P L K+ L G F VQ A + + D+
Sbjct: 203 PWLANPIRVTTETRKPFTELGISVEAAKI-LAIKGFKDAFAVQTAALPLLLPNPDLQGDV 261
Query: 73 CINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG--- 129
+ +PTGSGKTL+Y LP+VQ ++ LR ++VLPTRDL QV+ A A A
Sbjct: 262 VVAAPTGSGKTLAYVLPMVQDIALSQTTKLRGVIVLPTRDLVQQVQQACEACAAAFAGSS 321
Query: 130 ----LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD 185
+ VG A+G +E + P V+Q + VDIL+ TPGRL++
Sbjct: 322 GGKRVKVGTAMGNRPFKEEQGRPL------------PYHVIQHVPK-VDILICTPGRLVE 368
Query: 186 HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFG 245
HI T+GFTL+++ +LVVDE D+LL + +Q WL V NE
Sbjct: 369 HITKTKGFTLDYVRWLVVDEADKLLAQDFQQWLDVV-------NEK-------------- 407
Query: 246 SLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR---YK 302
L + + +K PR K++LSAT+T+D L L L P + +
Sbjct: 408 -LAVSKPGARDFAANNKTGPR--KVILSATMTRDITLLNGLKLSRPKLVVLEGAKAGDLA 464
Query: 303 LPERLESYKL-ICESKLKPLYLVALLQS-----LGEEKCIVFTSSVEST-----HRLCTL 351
+P L+ Y + I E LKPLYLV LLQS ++FT+S +S L
Sbjct: 465 IPATLKEYAIKITEPSLKPLYLVDLLQSKYMAAAFPTTALIFTASNQSALRLSRLLSLLL 524
Query: 352 LNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD 411
F L I + + SVR +TL+AF GK+++LV+SD ++RG+D+ +++V+NYD
Sbjct: 525 PPSFAPL---IGTLTSSTKTSVRLRTLRAFTSGKLRILVASDLVSRGIDLSNLDHVINYD 581
Query: 412 KPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF-KKLLQKADNDSCPIHSIPSSLIE 470
P +Y+HR GRTARAG+ G+ +TL+ E +RF ++ + + C + +E
Sbjct: 582 LPLSETSYVHRVGRTARAGREGKAWTLVEFAEARRFWREFVGEGSGAVCNVKRAEGRTVE 641
Query: 471 SLR 473
+R
Sbjct: 642 RVR 644
>gi|452825309|gb|EME32306.1| ATP-dependent RNA helicase [Galdieria sulphuraria]
Length = 568
Score = 208 bits (529), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 157/479 (32%), Positives = 232/479 (48%), Gaps = 75/479 (15%)
Query: 28 PLDHLPCLDPRLKVALQNMGISSLFPVQVAV--WQETIGPGLFERDLCINSPTGSGKTLS 85
P + L + L+++ IS LF Q V + ++ F D+ + +PTG+GKTL
Sbjct: 14 PYKDVKALPEYIGKRLKSLNISKLFRFQWTVIKYLLSLDRSNFPGDVIVQAPTGTGKTLC 73
Query: 86 YALPIVQTLSNRAVRC-LRALVVLPTR----------------DLALQVKDVFAAIAPAV 128
YA+ I+ L +R+ R LR LV++PTR +L Q+ VF A+
Sbjct: 74 YAISILTALKSRSSRPRLRGLVIVPTRYLIFAYFGFYDKFLIRELVNQLYSVFLALIGDD 133
Query: 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHIN 188
L V G +S++ E ++ I+ +L CY P VDIL++TP RL++HI+
Sbjct: 134 DLKVLGLSGDTSLSSERTKAIESIQLLEDECYSP-------VWKVDILISTPSRLVEHIH 186
Query: 189 ATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ-LTRSDNENRFSDASTFLPSAFGSL 247
GF + +LV+DETDRLL W+ T+L+ ++RS + + + +L G
Sbjct: 187 QRVGFEPTTIEFLVLDETDRLLSGQSLDWIETILRHISRSSDVTSSENRNLYLTGELGLR 246
Query: 248 KTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT----------- 296
K IR K++ SAT T KLA L L +P T
Sbjct: 247 KPIR-----------------KLLFSATQTSSIAKLANLSLVNPTLFTYKQDDAVRSILL 289
Query: 297 --------GETRYKLPERLESYKLICESKLKPL-----YLVALLQSLGEEKCIVFTSSVE 343
+ +Y LP LE + L+C+S ++ L YL L SL E IVF SS
Sbjct: 290 GNSSSEKRSKQKYWLPFALEEFVLLCKSPVEKLVSLVWYLKHLDSSLSEAGVIVFASSKI 349
Query: 344 STHRLCTLLNHF-------GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT 396
S HRL L+ + I I E S R ++ F K+QV+VSSD T
Sbjct: 350 SAHRLFRFLSLYFSAGYIESNTAIHIAELSSNLSNRQRRNVVRDFSLHKLQVVVSSDVAT 409
Query: 397 RGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 455
RGMD+E + +V+++D P ++KTY+HR GRTARAG G T+L + + F+KLL+K D
Sbjct: 410 RGMDIENIGHVISFDVPVHVKTYLHRVGRTARAGHKGTGCTILMEHQAHHFRKLLRKID 468
>gi|406601292|emb|CCH47065.1| ATP-dependent RNA helicase [Wickerhamomyces ciferrii]
Length = 642
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 149/464 (32%), Positives = 241/464 (51%), Gaps = 73/464 (15%)
Query: 12 LPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVW-------QETIG 64
L W+ +P + E P + P + L+++G + F Q+ +
Sbjct: 188 LNWLATPEYIKTDEIKPFKDFE-ISPIILKNLKDLGFDNAFATQIKTLGLLLPEINNKLN 246
Query: 65 PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124
P + DL +N+ TGSGKTL+Y +PI+Q+L NR V LR ++++PT+ L QV +I
Sbjct: 247 PNSIKGDLLVNASTGSGKTLAYTIPIIQSLQNRIVPRLRCIILVPTKPLINQVYKTMDSI 306
Query: 125 APAVGLSVGLAVGQS--SIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGR 182
+ + L++ + +G+S ++ DE +LIK + DI+++TPGR
Sbjct: 307 SKGIDLNI-VTLGKSDLNLQDEHLKLIK--------------------NVPDIIISTPGR 345
Query: 183 LMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPS 242
L+DH+N + L++L + V+DE DRLL +++Q W + + +T+ ++ N+ ++ S
Sbjct: 346 LVDHLNL-KSIDLKNLQWCVIDEADRLLNQSFQDW--SNVLITKLNDVNKGNNISKI--- 399
Query: 243 AFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP-LFLTTGETR- 300
FK P L+KM+ SATLT D KL+ L+ H+P L + E
Sbjct: 400 ----------------FK----PNLIKMIFSATLTTDSGKLSNLNFHNPRLIIVNNEESI 439
Query: 301 ------YKLPERLESYKLICESKL---KPLYLVALLQSLG-EEKCIVFTSSVESTHRLCT 350
+ LP +L + + S KPLYL+ L + L ++FT S EST RL
Sbjct: 440 LQNDKIFTLPTQLSEHTIKLSSNSSSHKPLYLLKLFEWLKYPHNVLIFTKSNESTLRLSR 499
Query: 351 LLNH-FGELRIK--IKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV 407
LL+ +L I I + Q +S +SK LK F EG I +L+S+D ++RG+D+ + +V
Sbjct: 500 LLSILVSKLSIPLIISNINSSQSRSEKSKLLKQFSEGSIHILISTDLISRGIDILTIQHV 559
Query: 408 VNYDKPAYIKTYIHRAGRTARAGQLGRCFT-LLHKDEVKRFKKL 450
+NYD P + Y+HR GRTARA G + L+ K EVK + K+
Sbjct: 560 INYDLPNSSREYVHRVGRTARANNKGDAYNFLIGKGEVKFWNKI 603
>gi|330916967|ref|XP_003297627.1| hypothetical protein PTT_08099 [Pyrenophora teres f. teres 0-1]
gi|311329592|gb|EFQ94284.1| hypothetical protein PTT_08099 [Pyrenophora teres f. teres 0-1]
Length = 704
Score = 206 bits (523), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 162/535 (30%), Positives = 244/535 (45%), Gaps = 116/535 (21%)
Query: 14 WMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGL---FER 70
W+ P V + P L +DP LQ G VQ A+ P L FE+
Sbjct: 148 WLAQPTTVEASKTVPFSEL-GVDPFFAKTLQKQGFKHALAVQTALL-----PMLRAGFEQ 201
Query: 71 ---DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 127
D+C+++ TGSGKTL+Y LPI++ L +R V L A+VV+P+R L Q V +
Sbjct: 202 HLGDICVSAKTGSGKTLAYLLPIIEQLKDRTVPVLSAIVVVPSRQLVNQALQVAEELCAG 261
Query: 128 VGLSVGLAVGQSSIADEISELIK-RPKLE----------------------AGICYD--- 161
+ VG A+G + A E +LIK RP+ + G+ D
Sbjct: 262 TKIKVGTALGNVAFATEQKQLIKLRPQYDPRRARELNEKASRQYQTGSTKKGGLYEDLKS 321
Query: 162 -PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAW--- 217
P D + + S VDIL+ TPGRL++HI T GF L + +LV+DE D+LL + +Q W
Sbjct: 322 MPLDHVPQYDSNVDILICTPGRLVEHIENTTGFLLNAVRWLVIDEADQLLNQNFQGWANV 381
Query: 218 --------LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVK 269
P L + + R DA++ A + RR +L K
Sbjct: 382 LMDALHGETPVDLMNAQERIQRREHDANSIWSVALPA----RR-------------QLTK 424
Query: 270 MVLSATLTQDPNKLAQLDLHHP-LFLTTGETR-----------YKLPERLESYKL-ICES 316
+VLSAT+ +D KL+ L L P L + +T ++LP LE + + + +
Sbjct: 425 VVLSATIEKDVTKLSTLRLKRPELVIVQDDTTEVQPLDYEDDVFELPSTLEEFAVHVGDG 484
Query: 317 KLKPLYLVALL---------------------------------QSLGEE--KCIVFTSS 341
KPL+L+ +L S+ ++ + ++F S
Sbjct: 485 SNKPLHLLYVLLNYVFPGSQTASVSSSDSSASDSSSDSDSDSGNTSVSQQTGRVLIFAKS 544
Query: 342 VESTHRLCTLLNHF-GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMD 400
ES RL LL+ + IK + K LK+F G I++L++SDA +RG+D
Sbjct: 545 TESASRLSHLLSVLMPNFKNHIKTMTRALTADASRKLLKSFSSGAIKILIASDAASRGLD 604
Query: 401 VEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 455
+ +++V+NYD P I +Y+HR GRTARA + G +TL K E F K + K D
Sbjct: 605 IPDISHVINYDLPTSITSYVHRVGRTARADKPGEAWTLFTKTEAAWFLKQVAKGD 659
>gi|146416595|ref|XP_001484267.1| hypothetical protein PGUG_03648 [Meyerozyma guilliermondii ATCC
6260]
Length = 631
Score = 204 bits (520), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 161/469 (34%), Positives = 231/469 (49%), Gaps = 81/469 (17%)
Query: 12 LPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQ--------ETI 63
L W+ +P+ S E P +K LQ+ G SS F VQV+V + + I
Sbjct: 176 LDWLATPIYASTTETVPFSSFGLSSSMVK-NLQSNGFSSAFSVQVSVLKLLLPDMESQAI 234
Query: 64 GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123
P + DL +N+ TGSGKTL YA+PI+++L NR V +RA+V++PT+ L QVK FA
Sbjct: 235 RPDI-GGDLLVNAATGSGKTLGYAIPIIESLRNRIVPRVRAIVLVPTKPLISQVKATFAM 293
Query: 124 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL 183
++ LSV SI DE Q LQ DI+V+TPGRL
Sbjct: 294 LSKNTNLSVVSLRSDISINDEA---------------------QRLQVVPDIIVSTPGRL 332
Query: 184 MDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPS 242
++H+ T G L+ L YLV+DE DRLL +++Q W T+ ++R D+ T+ PS
Sbjct: 333 VEHL--TNGHINLKSLRYLVIDEADRLLNQSFQNWCETL--MSRIDSNPILELDQTWRPS 388
Query: 243 AFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR-- 300
+ K+V SATLT D +L+ L L P + +
Sbjct: 389 ------------------------VQKLVFSATLTTDAGRLSMLKLQRPRLIIVNDRHEL 424
Query: 301 ----YKLPERLESYKL---ICESKLKPLYLVALLQSLGEEKCI---VFTSSVESTHRLCT 350
+ +P L+ YKL S KPL L L S E+K + VF S E++ RLC
Sbjct: 425 VNELFTVPATLQEYKLSLGSARSSAKPLVLAKFLMS--EQKLVNTLVFAKSNEASLRLCR 482
Query: 351 LLNH----FGELRIKIKEYSGLQR-QSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN 405
LL FG L + + + S R+K LK F + +LV +D + RG+D+ +
Sbjct: 483 LLQLLFRVFG-LDVTVSYLNSTNNAASTRAKILKDFANQTVHILVVTDLIARGIDIATIT 541
Query: 406 NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL-LHKDEVKRFKKLLQK 453
NV+NYD P + Y+HR GRTARA Q G +T+ K E K F +L+++
Sbjct: 542 NVINYDLPNSSRDYVHRVGRTARANQDGEAYTMCFGKGETKWFTQLVRE 590
>gi|223590192|sp|A5DK47.2|DBP6_PICGU RecName: Full=ATP-dependent RNA helicase DBP6
gi|190347303|gb|EDK39550.2| hypothetical protein PGUG_03648 [Meyerozyma guilliermondii ATCC
6260]
Length = 631
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 163/469 (34%), Positives = 234/469 (49%), Gaps = 81/469 (17%)
Query: 12 LPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQ--------ETI 63
L W+ +P+ S E P +K LQ+ G SS F VQV+V + + I
Sbjct: 176 LDWLATPIYASTTETVPFSSFGLSSSMVK-NLQSNGFSSAFSVQVSVLKLLLPDMESQAI 234
Query: 64 GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123
P + DL +N+ TGSGKTL YA+PI+++L NR V +RA+V++PT+ L QVK FA
Sbjct: 235 RPDI-GGDLLVNAATGSGKTLGYAIPIIESLRNRIVPRVRAIVLVPTKPLISQVKATFAM 293
Query: 124 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL 183
++ LSV SI DE Q LQ DI+V+TPGRL
Sbjct: 294 LSKNTNLSVVSLRSDISINDEA---------------------QRLQVVPDIIVSTPGRL 332
Query: 184 MDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPS 242
++H+ T G L+ L YLV+DE DRLL +++Q W T+ ++R D+ N S+
Sbjct: 333 VEHL--TNGHINLKSLRYLVIDEADRLLNQSFQNWCETL--MSRIDS-NPISELD----- 382
Query: 243 AFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR-- 300
+T R P + K+V SATLT D +L+ L L P + +
Sbjct: 383 -----QTWR-------------PSVQKLVFSATLTTDAGRLSMLKLQRPRLIIVNDRHEL 424
Query: 301 ----YKLPERLESYKL---ICESKLKPLYLVALLQSLGEEKCI---VFTSSVESTHRLCT 350
+ +P L+ YKL S KPL L L S E+K + VF S E++ RLC
Sbjct: 425 VNELFTVPATLQEYKLSLGSARSSAKPLVLAKFLMS--EQKLVNTLVFAKSNEASLRLCR 482
Query: 351 LLNH----FGELRIKIKEYSGLQR-QSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN 405
LL FG L + + + S R+K LK F + +LV +D + RG+D+ +
Sbjct: 483 LLQLLFRVFG-LDVTVSYLNSTNNAASTRAKILKDFANQTVHILVVTDLIARGIDIATIT 541
Query: 406 NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL-LHKDEVKRFKKLLQK 453
NV+NYD P + Y+HR GRTARA Q G +T+ K E K F +L+++
Sbjct: 542 NVINYDLPNSSRDYVHRVGRTARANQDGEAYTMCFGKGETKWFTQLVRE 590
>gi|294657476|ref|XP_459782.2| DEHA2E10912p [Debaryomyces hansenii CBS767]
gi|218512021|sp|Q6BPT8.2|DBP6_DEBHA RecName: Full=ATP-dependent RNA helicase DBP6
gi|199432720|emb|CAG88021.2| DEHA2E10912p [Debaryomyces hansenii CBS767]
Length = 576
Score = 202 bits (514), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 153/468 (32%), Positives = 232/468 (49%), Gaps = 75/468 (16%)
Query: 12 LPWMRSPVDVSLFEDCPLDHL--PCLDPRLKVALQNMGISSLFPVQVAVW--------QE 61
L W+ +P+ + E P P L + L+NMG S F VQ++V +
Sbjct: 112 LDWLTTPIYTAPEETKPFAEFQNPPLSSLMIKNLRNMGFESAFSVQISVLNLMLKDIERN 171
Query: 62 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121
+ P + DL +N+ TGSGKTL+Y++PI+++L V +RA++++PT+ L QVK
Sbjct: 172 RLQPDM-RGDLLVNASTGSGKTLAYSIPIIESLQTVKVPRVRAIILVPTKPLINQVKTTL 230
Query: 122 AAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAV-DILVATP 180
++ LS+ S+ +++S IK E GI +LQ+ DI+V+TP
Sbjct: 231 NQLSKGTNLSI------VSLKNDLS--IK----EEGI---------KLQTNEPDIIVSTP 269
Query: 181 GRLMDHINATRGF-TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTF 239
GRL+DH+ T G+ +L++L YLV+DE DRLL +++Q W
Sbjct: 270 GRLVDHL--TNGYISLKNLQYLVIDEADRLLNQSFQNW-------------------CQI 308
Query: 240 LPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET 299
L S I+ + +K + KM+ SATLT D KL+ L H P +
Sbjct: 309 LISKIDEFTNIKERNISNSWK----LNVQKMIFSATLTTDAGKLSLLKFHKPRLIIVNNK 364
Query: 300 R------YKLPERLESYKL---ICESKLKPLYLVALLQSLGE-EKCIVFTSSVESTHRLC 349
+ LP L +KL +S LKPL L L S + ++FT S +++ RL
Sbjct: 365 EQLVNEMFSLPATLNEFKLQFGSAKSSLKPLILSKFLLSKNKLANVLIFTKSNDASLRLS 424
Query: 350 T----LLNHFGELRIKIKEYSGLQRQ-SVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 404
++N G I I + SVRSK LK F + I +LV++D + RG+D+ +
Sbjct: 425 RLLSLIMNKLGSETINIAYINSTNNTTSVRSKILKDFSKQTINILVATDLIARGIDILSI 484
Query: 405 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL-LHKDEVKRFKKLL 451
+V+NYD P + Y+HR GRTARA Q G + K E K FKKL+
Sbjct: 485 TDVINYDLPNSSREYVHRVGRTARANQEGFAYNFCFGKGEAKWFKKLM 532
>gi|169598424|ref|XP_001792635.1| hypothetical protein SNOG_02017 [Phaeosphaeria nodorum SN15]
gi|111069109|gb|EAT90229.1| hypothetical protein SNOG_02017 [Phaeosphaeria nodorum SN15]
Length = 648
Score = 201 bits (511), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 157/527 (29%), Positives = 244/527 (46%), Gaps = 106/527 (20%)
Query: 13 PWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAV-------WQETIGP 65
PW+ P V P L +D L++ G VQ A+ +++ +G
Sbjct: 140 PWLAQPTTVESSRTVPFAEL-GVDAHYLKKLESQGFKDALAVQTALLPMLHQGFEQHLG- 197
Query: 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL---ALQV-KDVF 121
D+C+++ TGSGKTL+Y LPI++ L +RAV L A+VV+P+R L ALQV +D+
Sbjct: 198 -----DICVSAKTGSGKTLAYLLPIIEALKDRAVPTLSAIVVVPSRQLVNQALQVAEDLC 252
Query: 122 AAIAPAVGLSVG--------------------LAVGQSSIADEISELIKRPKLEAGICYD 161
A VG ++G A G + + S+ + +E G D
Sbjct: 253 AGTKIKVGTALGNTAFPPDAEAAGQVEGSVPPHAAGAKDLHERASQQFRTGFVEKGGILD 312
Query: 162 -----PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 216
P+D + + S VDIL+ TPGRL++HI T GF L + +LV+DE D+LL + +Q
Sbjct: 313 DLMNMPQDHIPQYDSGVDILICTPGRLVEHIEHTTGFLLNSVRWLVIDEADQLLNQNFQG 372
Query: 217 WLPTVLQLTRSDNENRFSDASTFL-------PSAFGSLKTIRRCGVERGFKDKPYPRLVK 269
W ++ + F +A L S + ++ RR +L K
Sbjct: 373 WASVLMDALHGETPVDFMNAQERLLKRERDANSMWSAILPARR-------------QLTK 419
Query: 270 MVLSATLTQDPNKLAQLDLHHPLF------------LTTGETRYKLPERLESYKL-ICES 316
+VLSAT+ +D KL L L P L + ++LP L+ + + + +
Sbjct: 420 IVLSATMEKDLTKLGTLRLKRPKLVVVQDEATEVQPLDHEDNNFELPSTLDEFSVHVADG 479
Query: 317 KLKPLYLVALLQSL-------GEE---------------KCIVFTSSVESTHRLCTLLNH 354
KPL+L+ +L + GE + +VFT S E+ RL LL
Sbjct: 480 SNKPLHLLYVLLNYVFTGIETGENNEDEDSETGVAEHPSRVLVFTKSTENASRLSHLLAT 539
Query: 355 FG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP 413
+ +K + K LK+F G+I++L++SDA +RG+D+ + +V+NYD P
Sbjct: 540 LAPAFKNHLKTMTRALTAEASRKLLKSFGTGEIKILIASDAASRGLDIPDITHVINYDMP 599
Query: 414 AYIKTYIHRAGRTARAGQL----GRCFTLLHKDEVKRFKKLLQKADN 456
I +Y+HR GRTARAG+ GRC K E F K + K D+
Sbjct: 600 TSITSYVHRVGRTARAGKSGGKHGRCSP---KTEAAWFIKQITKGDS 643
>gi|367009624|ref|XP_003679313.1| hypothetical protein TDEL_0A07700 [Torulaspora delbrueckii]
gi|359746970|emb|CCE90102.1| hypothetical protein TDEL_0A07700 [Torulaspora delbrueckii]
Length = 627
Score = 198 bits (504), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 138/431 (32%), Positives = 218/431 (50%), Gaps = 79/431 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQE----------TIGPGLFER--DLCINSPTGSGK 82
+ P+L ++ ++ FP+Q A+ + T L R D+ +N+ TGSGK
Sbjct: 177 MQPKLLQNVEKYFSANSFPIQTALLENLLPILNFSLSTTKKHLTRRVGDVLVNASTGSGK 236
Query: 83 TLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIA 142
TL+Y++PIVQ LS R V LRAL+++PT+ L QV D +A GL + ++ ++S+
Sbjct: 237 TLAYSIPIVQLLSKRTVNRLRALIIVPTKLLINQVYDTINKLAQGTGLIISISKLENSLK 296
Query: 143 DEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLV 202
+E + +QS D+L+ TPGRL+DH+ + ++++L L+
Sbjct: 297 EEHKKF--------------------MQSEPDVLIITPGRLVDHL-QMKSISMKNLQMLI 335
Query: 203 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDK 262
+DE D LL +++Q W P +L S + K +R G
Sbjct: 336 LDEADHLLNQSFQNWCPRLL-------------------SQITAEKHDQRPG-------- 368
Query: 263 PYPRLVKMVLSATLTQDPNKLAQLDLHHP-LFLTTGETRYKLPERLESYKL---ICESKL 318
++KMV SATLT + KL L+L++P LF+ Y LPE+L+ Y + +S
Sbjct: 369 ---NVIKMVFSATLTTNTEKLHGLNLNNPRLFIMDSVKLYSLPEKLQEYIVNIPTSKSLY 425
Query: 319 KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN----------HFGELRIKIKEYSGL 368
KPL L+ LL + K +VF S E++ RL LLN H E I G
Sbjct: 426 KPLILLHLLDHMKSAKVLVFVKSNEASLRLACLLNILIDQNLAQRHIVE-TINSNNSKGE 484
Query: 369 QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 428
++ V +K A E K ++L+++D M+RG+D+ +++V+NYD P + Y+HR GRTAR
Sbjct: 485 NKRLV-NKFASAECESKNRILITTDLMSRGIDINDISDVINYDLPISSQQYVHRCGRTAR 543
Query: 429 AGQLGRCFTLL 439
A G + LL
Sbjct: 544 AQSKGNAYNLL 554
>gi|156847460|ref|XP_001646614.1| hypothetical protein Kpol_1028p29 [Vanderwaltozyma polyspora DSM
70294]
gi|160380624|sp|A7TFZ9.1|DBP6_VANPO RecName: Full=ATP-dependent RNA helicase DBP6
gi|156117293|gb|EDO18756.1| hypothetical protein Kpol_1028p29 [Vanderwaltozyma polyspora DSM
70294]
Length = 637
Score = 198 bits (504), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 144/434 (33%), Positives = 217/434 (50%), Gaps = 85/434 (19%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGL----------FER---DLCINSPTGSG 81
+DP+L +Q + FP+Q ++ ET+ P L F R D+ +N+ TGSG
Sbjct: 182 IDPKLLKNIQQNFSTDTFPIQ-SILLETLLPTLNFSYNITKKNFTRRVGDVLVNASTGSG 240
Query: 82 KTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSI 141
KTL+Y++PI+Q LS R V LRALV++PT+ L QV + F +A L V ++ ++S+
Sbjct: 241 KTLAYSIPILQILSKRTVNKLRALVIVPTKLLINQVYETFNNLAQGTSLIVSISKLENSL 300
Query: 142 ADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYL 201
+E +L LQ+ DIL+ TPGRL+DH+ + L +L +L
Sbjct: 301 KEENKKL--------------------LQNEPDILITTPGRLVDHLQSG-AVNLRNLKFL 339
Query: 202 VVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKD 261
V+DE DRLL +++Q W +L ++D ++ +P
Sbjct: 340 VLDEADRLLNQSFQNWCNELLNKLKTDKQDH-------MPG------------------- 373
Query: 262 KPYPRLVKMVLSATLTQDPNKLAQLDLHHP-LFLTTGETRYKLPERLESYKL---ICESK 317
+VKMV SATLT + KL L ++P LF+ Y LP L+ Y L ++
Sbjct: 374 ----NIVKMVFSATLTTNTEKLHGLQFYNPKLFVMDSVKLYHLPRMLQEYNLHIPTAKTS 429
Query: 318 LKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKT 377
KPL+L+ LL + K +VF S ES+ RL +L + I+ K S SV S
Sbjct: 430 YKPLFLLRLLSEINGSKMLVFVKSNESSLRLASL----LSIMIEHKLGSQFDINSVNSNN 485
Query: 378 LKA------------FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGR 425
KA K+QVL+++D M+RG+D+ + +V+NYD P + YIHR GR
Sbjct: 486 TKAENRRIVNEFASNNNTSKVQVLITTDVMSRGVDINDITDVLNYDVPISSQQYIHRCGR 545
Query: 426 TARAGQLGRCFTLL 439
TARA G + +L
Sbjct: 546 TARAQSKGTAYNML 559
>gi|401840382|gb|EJT43223.1| DBP6-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 629
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 149/494 (30%), Positives = 236/494 (47%), Gaps = 100/494 (20%)
Query: 30 DHLPCLDPRLKVALQNM---GISSLFPVQVAVWQETIGPGL----------FER---DLC 73
D+ L+P+L LQN+ ++ FP+Q ++ ++I P L F R D
Sbjct: 176 DYKNELEPKL---LQNICKNFSTNAFPIQ-SIILDSILPILNFTLNVSKRYFTRRIGDTL 231
Query: 74 INSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVG 133
+N+ TGSGKTL+Y++P+VQTLS R + LR L+V+PT+ L QV + + L V
Sbjct: 232 VNAATGSGKTLAYSIPVVQTLSRRKINRLRCLIVVPTKLLINQVHTTLTKLTQGMSLIVS 291
Query: 134 LAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193
+A ++S+ DE + + LE DIL+ TPGRL+DH+N +
Sbjct: 292 IAKLENSLKDEHKKFL---NLEP-----------------DILITTPGRLVDHLNM-KSI 330
Query: 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRC 253
L++L +L++DE DRLL +++Q W P ++ ++D + F
Sbjct: 331 NLKNLKFLIIDEADRLLNQSFQGWCPKLVFHLKTDKLDTFPG------------------ 372
Query: 254 GVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP-LFLTTGETRYKLPERLESYKL 312
++KM+ SATLT + KL L+L+ P LFL + Y+LP +L + +
Sbjct: 373 ------------NVIKMIFSATLTTNTEKLNDLNLYKPKLFLKQTDKLYQLPSKLREFNI 420
Query: 313 ---ICESKLKPLYLVALLQSL-----GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKE 364
+S KPL L+ + K ++F S ES+ RL LL E R +
Sbjct: 421 NVPTAKSIYKPLILLYSIDQFIAHLSDASKILIFVKSNESSIRLTKLLQLISESRSQSNI 480
Query: 365 YSGLQR-------------QSVRSKTLKAF----REGKIQVLVSSDAMTRGMDVEGVNNV 407
+ LQ QS K + F + I +L+++D M+RG+D+ + V
Sbjct: 481 FRNLQNLEMVINSVNSNHPQSENKKIVANFSNRSKSASINILITTDVMSRGIDINDITQV 540
Query: 408 VNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL-HKDEVKRFKKLLQKADNDSCPIH--SI 464
+NYD P + Y+HR GRTARA + G + LL + E F L + D D + +
Sbjct: 541 INYDPPMSSQQYVHRVGRTARANETGSAYNLLVGRGERTFFDDLNKDLDRDGKSVAPLEL 600
Query: 465 PSSLIESLRPVYKS 478
+L+ES +Y S
Sbjct: 601 DFTLLESDSELYHS 614
>gi|391327051|ref|XP_003738021.1| PREDICTED: ATP-dependent RNA helicase DDX51-like [Metaseiulus
occidentalis]
Length = 429
Score = 195 bits (496), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 134/443 (30%), Positives = 213/443 (48%), Gaps = 40/443 (9%)
Query: 54 VQVAVWQETIGP-----GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108
+Q V +E + P GL RD+C+ +PTGSGKTL+Y LP+++ L + +RA+++L
Sbjct: 1 MQKQVIRELLDPRYDIMGLPPRDICVAAPTGSGKTLAYVLPLIKLLKGLFEKAIRAVILL 60
Query: 109 PTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQE 168
PT +LA QV DVF A LS L G S ++E+ L++R
Sbjct: 61 PTSELAKQVYDVFTRYAAPFQLSAALLTGLKSHSEEVKTLLERG---------------- 104
Query: 169 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSD 228
VD+++ATP ++H+ T GF L + +LV+DE DR++ + V +
Sbjct: 105 -HPIVDVVIATPKTFLNHLRLTPGFNLRLVSHLVLDEADRMVDMVIHGLIREV------E 157
Query: 229 NENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDL 288
N D++ S G+ + R + D L K++ SATL DP KL ++L
Sbjct: 158 NAIYVDDSARCRCSEIGNFERSRPTAISCCTMDAHSLPLRKLLYSATLMSDPEKLRHVNL 217
Query: 289 HHP-LFLTTGE------TRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 341
+P +F E + LP+ LE K+ C+ ++PL + L + IVF S
Sbjct: 218 FYPRVFHAKAEHANRSDKAFALPDSLEERKIFCDIDVRPLLVWWLFVHQKMGRMIVFARS 277
Query: 342 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 401
E HRL ++ G K+ + S ++ R K L F EG +++++ ++RGMD+
Sbjct: 278 REECHRLRIVIEFMGS--CKVVDLSADMKKRQRQKALADFDEGLCDMIIATQVLSRGMDL 335
Query: 402 EGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPI 461
+ V +VV Y P + Y+H GRTARA + G+ LL E + K L+ N
Sbjct: 336 KSVEHVVLYHAPTSAEDYVHMVGRTARANKQGKSLVLLSPAENAKLSKTLKAISNSKVKE 395
Query: 462 HSIPSSLIESLRPVYKSVRGGIS 484
S SLR Y++ ++
Sbjct: 396 FQWDPS---SLREFYQNYEAALA 415
>gi|345563939|gb|EGX46922.1| hypothetical protein AOL_s00097g348 [Arthrobotrys oligospora ATCC
24927]
Length = 668
Score = 195 bits (495), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 159/488 (32%), Positives = 221/488 (45%), Gaps = 88/488 (18%)
Query: 11 VLP-WMRSPVDVSLFEDCPLDH--LPCLDPRLKVALQNMGISSLFPVQVAVW-----QET 62
VLP ++ P V + P + LP L L L+ +G FPVQ A+
Sbjct: 169 VLPSYLSQPTTVPTSQRPPFESFGLPEL---LLSRLEKLGFKDTFPVQSALLPLLLPDNR 225
Query: 63 IGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 122
+ P DL +++ TGSGKTLSY LPI+ +L NR V AL+++PT +LA QV+
Sbjct: 226 LPPSTPRSDLLVSAATGSGKTLSYLLPILASLINRIVPHTYALIIVPTHELATQVQRTAH 285
Query: 123 AIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGR 182
++A L + A+G S E +I G DIL+ATPGR
Sbjct: 286 SLAAGTSLKISTAIGTRSFEVEKDHIIANDIGSTG---------------ADILIATPGR 330
Query: 183 LMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV---LQ--LTRSDNENRFSDAS 237
L++HI FTL HL +LVVDE DRLL +++Q W+ V LQ +R D + F S
Sbjct: 331 LVEHIRNNPQFTLRHLQWLVVDEADRLLSQSFQDWVEVVGDELQKPFSREDEQGGFDITS 390
Query: 238 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT- 296
L + + T+R K++LSAT+T+D +LA L L P +
Sbjct: 391 MGLRTPKRAADTVR-----------------KVILSATMTRDVGRLAGLKLRRPQLIAVD 433
Query: 297 ---------------GETR----------YKLPERLES-YKLICESKLKPLYLVALL-QS 329
GE + LP LE Y + KPL L LL S
Sbjct: 434 DIGGQEMAIDGSDNDGEDQETADKGLRELNSLPSTLEEHYYPVSNPTQKPLILAKLLSDS 493
Query: 330 LGEEKCIVFTSSVESTHRLCTLLN-----HFGELR-------IKIKEYSGLQRQSVRSKT 377
+ +VFT S ES RL LL G+ R +I + +R+ S
Sbjct: 494 QTKSGILVFTKSNESASRLARLLELLFAKKLGKKRKGSSGKDWRIAVSTSDKRKKEISAN 553
Query: 378 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFT 437
F+ I +L+S+D M RG+D+ V+NYD P K YIHR GRTARAG G ++
Sbjct: 554 TSKFKASTIDILISTDLMGRGVDLPNAQLVINYDSPRNEKDYIHRVGRTARAGNKGITWS 613
Query: 438 LLHKDEVK 445
L+ E +
Sbjct: 614 LVEDSEAR 621
>gi|313220373|emb|CBY31228.1| unnamed protein product [Oikopleura dioica]
Length = 521
Score = 194 bits (493), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 147/443 (33%), Positives = 218/443 (49%), Gaps = 74/443 (16%)
Query: 3 EAKKKSMPVLP-WMRSP--VDVSLFEDCPLDHL-PCLDPRLKVALQNMGISSLFPVQVAV 58
+ KK+ P W P +D PL+ L LD + L+ M +S+FPVQ A+
Sbjct: 104 QKKKRIAASFPRWCEKPEVIDGDFTNLPPLEELHEFLDDTIYKNLEAMNFTSVFPVQRAI 163
Query: 59 WQETI--GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116
E + GP RDL + +PTGSGKT+++ +PIVQ L +RA+ +RAL+VLPTR+LA Q
Sbjct: 164 IPELLRRGPP---RDLAVQAPTGSGKTITFLVPIVQKLMHRAIPSIRALIVLPTRELAKQ 220
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDIL 176
V DV + L+ L VG +++ + ++L + + E + DI+
Sbjct: 221 VNDVLLELIKGTKLASHLLVGATTLDQDCNKLT-------------QTIGGEKYATCDII 267
Query: 177 VATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDA 236
VATPGRLMDH+ G L L +LVVDE DR+ AWL + Q T NR
Sbjct: 268 VATPGRLMDHLE--NGLDLSRLRFLVVDEADRM----RGAWLEKLEQKT-----NR---- 312
Query: 237 STFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT 296
L K++ SATL DP L+ L L P T+
Sbjct: 313 ----------------------------ALLQKLLFSATLASDPQFLSSLKLRFPKLYTS 344
Query: 297 GETR-YKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHF 355
G T+ L E + Y + E KP + +L++ + + ++F +S ES L LL
Sbjct: 345 GWTQPAGLTEEMIRYGRLDE---KPRIIRSLIKD--DTRALIFVNSNESAVALDDLLKKS 399
Query: 356 GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAY 415
G ++ + + R +K F++GKI ++ +D + RG+D++ N V+NYD
Sbjct: 400 G---VRCESIAKTLENWQRKNAIKKFKKGKISAIICTDVVARGLDLDCCNIVINYDVALS 456
Query: 416 IKTYIHRAGRTARAGQLGRCFTL 438
T++HR+GRTARAG G C TL
Sbjct: 457 AATHVHRSGRTARAGSAGVCITL 479
>gi|378754810|gb|EHY64839.1| hypothetical protein NERG_02242 [Nematocida sp. 1 ERTm2]
Length = 421
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 137/440 (31%), Positives = 210/440 (47%), Gaps = 72/440 (16%)
Query: 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCIN-SPTGSGKTLSYALPIVQ 92
LD L AL GI+ P ++ Q+ + L R + S TG+GKTL+Y LPI+
Sbjct: 12 TLDTSLVEALAKKGITQ--PTEI---QKLMLTNLVNRQSILAISNTGTGKTLAYLLPIMH 66
Query: 93 TLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
TL + A+V+LPTR+L+ QV V A I +GL L +G + + + L RP
Sbjct: 67 TLLQDD-KYFYAMVILPTRELSQQVHAVLADIGAEIGLRTSLLIGATDLLSQGKSLAARP 125
Query: 153 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE 212
I++ TPGR+ H+ T+G ++ YLV+DE DRLL
Sbjct: 126 H---------------------IVIGTPGRINHHLRNTKGISVSSFKYLVLDECDRLLDN 164
Query: 213 AYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVL 272
+ + +L++ S TFL
Sbjct: 165 DFDGDINNILEM--------ISPKYTFL-------------------------------F 185
Query: 273 SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGE 332
SATLT+ N + +++PL + +PE + + K K +YL +++ +LG
Sbjct: 186 SATLTKRVNAFKEKRMNNPLLYNVQKDE-GIPENILQQYIYLPQKYKEMYLYSIVHNLGS 244
Query: 333 EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS 392
KCIVF + + R+ +L GE I G + Q +R++T++ FR GK +L+S+
Sbjct: 245 RKCIVFVKTCITAERIERILRFLGESVCSIH---GNKTQDIRTETIEMFRRGKHSILIST 301
Query: 393 DAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 452
D + RGMD++G+ ++NYD P K YIHR GRT RAG++G TL+ + +V F+KL
Sbjct: 302 DVVARGMDMDGIKVIINYDMPDGHKEYIHRIGRTGRAGEVGSSITLVTQYDVDDFRKLEV 361
Query: 453 KADNDSCPIHSIPSSLIESL 472
K N +S+ S LI SL
Sbjct: 362 KL-NKKMDEYSVSSELIYSL 380
>gi|358255930|dbj|GAA57535.1| ATP-dependent RNA helicase DDX51/DBP6, partial [Clonorchis sinensis]
Length = 1092
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 170/558 (30%), Positives = 251/558 (44%), Gaps = 108/558 (19%)
Query: 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIG--------PGLFE 69
P D+S + ++ L L+P ++ L ++G S LFPVQ V + P
Sbjct: 517 PSDLSFRQK--VEDLKELNPFMQSRLVDIGCSELFPVQACVIPSILRSYRLNKRRPLCRP 574
Query: 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129
D+CI +PTGSGKTL+Y++P++Q L R LRALV+LP RDLA QV V +A
Sbjct: 575 SDICIAAPTGSGKTLAYSIPLIQLLHGRVQVFLRALVILPVRDLAAQVFQVLLDLAEGTD 634
Query: 130 LSVG--LAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVATPGRLMDH 186
L V L SI LI K D D + + DI+VATPGRL+DH
Sbjct: 635 LRVSCLLICTNCSITPLQIVLINGSKSFMKEQLDLVDTTSSVAHTKADIVVATPGRLVDH 694
Query: 187 INATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAF-- 244
I T GF+LE L LV+DE DR++ E Q W R + + + P+AF
Sbjct: 695 IYNTVGFSLERLRILVIDEADRVISEEKQDWY-------------RILEDALYHPNAFAF 741
Query: 245 ---GSLKTIRRCGVERG---------FKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP- 291
G + R G++R + L K++ SATLT DP L + +L+ P
Sbjct: 742 DIDGEIGYRRPTGLQRTRPVMTIMHQYDTSHDITLQKILASATLTHDPEPLKRFNLYFPH 801
Query: 292 LFLTTGETRYKLPERLESYKLIC------ESKLKP--------LYLVALLQSLGEEKCI- 336
LF ++ + R + ++C E L+P +AL + +
Sbjct: 802 LFASSTSAQ----PRNSNGPIVCDIGHAVEPDLEPPMKKKKKQKKKIALSEGMAHNASHT 857
Query: 337 -------------VFTS---------SVESTHR---LCTLLNH---------------FG 356
VF++ +V+ HR L L+ H
Sbjct: 858 DCSETVQDAGGVGVFSTPPGLKEYVVAVQPEHRALFLIHLIRHENVKRVLCFTNSRTTAA 917
Query: 357 ELRIKIKEYSGLQRQSV--------RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVV 408
L + + + G++ + R + L AF ++ VLV +D+M RGMDV+ VN VV
Sbjct: 918 RLHMLLSNFKGIRSYRISGHMPPDKRQRVLSAFTRNELDVLVCTDSMARGMDVKEVNCVV 977
Query: 409 NYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSL 468
+Y+ P +K Y+HR GRTARAGQ G +TLL+K++ FKK L+ + +S
Sbjct: 978 SYEMPPNVKIYVHRVGRTARAGQPGLAYTLLNKNQFFHFKKDLRAVGKQKLKEVTFHASH 1037
Query: 469 IESLRPVYKSVRGGISDE 486
L+ YK G + +E
Sbjct: 1038 FAHLQEEYKQALGRLEEE 1055
>gi|313234211|emb|CBY10279.1| unnamed protein product [Oikopleura dioica]
Length = 521
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 147/443 (33%), Positives = 218/443 (49%), Gaps = 74/443 (16%)
Query: 3 EAKKKSMPVLP-WMRSP--VDVSLFEDCPLDHL-PCLDPRLKVALQNMGISSLFPVQVAV 58
+ KK+ P W P +D PL+ L LD + L+ M +S+FPVQ A+
Sbjct: 104 QKKKRIAASFPRWCEKPEVIDGDFTNLPPLEELHEFLDDTIYKNLEAMNFTSVFPVQRAI 163
Query: 59 WQETI--GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116
E + GP RDL + +PTGSGKT+++ +PIVQ L +RA+ +RAL+VLPTR+LA Q
Sbjct: 164 IPELLRRGP---PRDLAVQAPTGSGKTITFLVPIVQKLMHRAIPSIRALIVLPTRELAKQ 220
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDIL 176
V DV + L+ L VG +++ + ++L + + E + DI+
Sbjct: 221 VNDVLLELIKGTKLASHLLVGATTLDQDCNKLT-------------QTIGGEKYATCDII 267
Query: 177 VATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDA 236
VATPGRLMDH+ G L L +LVVDE DR+ AWL + Q T NR
Sbjct: 268 VATPGRLMDHLE--NGLDLSRLRFLVVDEADRM----RGAWLEKLEQKT-----NR---- 312
Query: 237 STFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT 296
L K++ SATL DP L+ L L P T+
Sbjct: 313 ----------------------------ALLQKLLFSATLASDPQFLSSLKLRFPKLYTS 344
Query: 297 GETR-YKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHF 355
G T+ L E + Y + E KP + +L++ + + ++F +S ES L LL
Sbjct: 345 GWTQPAGLTEEMIRYGRLDE---KPRIIRSLIKD--DTRALIFVNSNESAVALDDLLKKS 399
Query: 356 GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAY 415
G ++ + + R +K F++GKI ++ +D + RG+D++ N V+NYD
Sbjct: 400 G---VRCESIAKTLENWQRKNAIKKFKKGKISAIICTDVVARGLDLDCCNLVINYDVALS 456
Query: 416 IKTYIHRAGRTARAGQLGRCFTL 438
T++HR+GRTARAG G C TL
Sbjct: 457 AATHVHRSGRTARAGSAGVCITL 479
>gi|387592705|gb|EIJ87729.1| hypothetical protein NEQG_02276 [Nematocida parisii ERTm3]
gi|387595334|gb|EIJ92959.1| hypothetical protein NEPG_02358 [Nematocida parisii ERTm1]
Length = 427
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 127/397 (31%), Positives = 193/397 (48%), Gaps = 66/397 (16%)
Query: 76 SPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLA 135
S TG+GKTL+Y+LPI+ +L N R A+++LPTR+L+ QV V + I +GL L
Sbjct: 50 SNTGTGKTLAYSLPILHSLLNDD-RYFYAMIILPTRELSQQVHAVLSDIGAEIGLRTTLL 108
Query: 136 VGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTL 195
+G + + L RP I++ TPGR+ H+ T+G TL
Sbjct: 109 IGAVDLLVQGKSLAARPH---------------------IIIGTPGRIYHHLRNTKGITL 147
Query: 196 EHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGV 255
YLV+DE DRLL + + +L+L
Sbjct: 148 SSFKYLVLDECDRLLDNDFDGDINGILELIS----------------------------- 178
Query: 256 ERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE 315
P+ + + SATLT+ N +++PL + +PE + +
Sbjct: 179 ---------PKYI-FLFSATLTKRVNAFKNKRMNNPLLYNVQKDE-GIPENISQQYVYLP 227
Query: 316 SKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRS 375
K K +YL ++++SLG KCIVF + + ++ +L E I G + Q VR+
Sbjct: 228 QKYKEVYLYSIIRSLGSRKCIVFVKTCITAEKIERMLRSLDESVCSI---HGNKSQEVRT 284
Query: 376 KTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRC 435
+T++ FR G+ VL+S+D + RGMD+EG+ ++NYD P K YIHR GRT RAG+ G
Sbjct: 285 ETIEMFRRGRYSVLISTDVVARGMDMEGIKIIINYDMPDGHKEYIHRIGRTGRAGETGSS 344
Query: 436 FTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESL 472
TL+ + +V+ F+KL K D +SI S LI SL
Sbjct: 345 ITLVTQYDVEEFRKLEVKLDL-KMDEYSISSDLIYSL 380
>gi|50288559|ref|XP_446709.1| hypothetical protein [Candida glabrata CBS 138]
gi|74661318|sp|Q6FST5.1|DBP6_CANGA RecName: Full=ATP-dependent RNA helicase DBP6
gi|49526017|emb|CAG59636.1| unnamed protein product [Candida glabrata]
Length = 651
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 138/430 (32%), Positives = 219/430 (50%), Gaps = 76/430 (17%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETI---------GPGLFER---DLCINSPTGSGK 82
L P+L ++ S FP+Q A+ + + F R D+ +N+ TGSGK
Sbjct: 200 LTPKLLNNIEKYFSKSTFPIQTAMLDQYLKLINFTLKTSKKNFTRRIGDILVNASTGSGK 259
Query: 83 TLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIA 142
TL+Y++PI+QTLS+R V LR L++LPT+ L QV + +A L + ++ ++S
Sbjct: 260 TLAYSIPIIQTLSSRTVNKLRVLIILPTKLLINQVFQTMSQLAEGTSLVITVSKLENSFN 319
Query: 143 DEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLV 202
+E L+K + DI + TPGRL+DH+ +L +L +LV
Sbjct: 320 EEHKRLLK--------------------TEPDIFITTPGRLVDHL-TNSSISLRNLKFLV 358
Query: 203 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDK 262
+DE DRLL +++Q W+P V+ +SD ++ +P +
Sbjct: 359 LDEADRLLNQSFQNWIPEVMSKFKSDKFDQ-------MPGS------------------- 392
Query: 263 PYPRLVKMVLSATLTQDPNKLAQLDLHHP-LFLTTGETRYKLPERLESYKL---ICESKL 318
++KMV SATLT + KL L L++P LF T Y LP L+ Y+L +S
Sbjct: 393 ----IIKMVFSATLTTNTEKLNDLQLYNPTLFATDSVKLYNLPPTLQEYQLQIPSAKSVY 448
Query: 319 KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN-----HFGELRIKIKEYSGLQRQSV 373
KPLYL+ LL+ L K +VF S ES+ +L LL H L+I + + ++
Sbjct: 449 KPLYLLKLLEQLSGGKTLVFVRSNESSLKLEVLLKSLIKGHMTTLQIVVHSINSNNSKAE 508
Query: 374 RSKTLKAFRE----GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA 429
+ + F + + VL+++D M+RG+D+E + NV+NYD P + Y+HR GRTARA
Sbjct: 509 NRRLVTDFTKESLPNQTNVLITTDLMSRGIDIENIANVINYDVPISSQQYVHRCGRTARA 568
Query: 430 GQLGRCFTLL 439
+ G+ + +L
Sbjct: 569 NKDGKAYNML 578
>gi|410078027|ref|XP_003956595.1| hypothetical protein KAFR_0C04690 [Kazachstania africana CBS 2517]
gi|372463179|emb|CCF57460.1| hypothetical protein KAFR_0C04690 [Kazachstania africana CBS 2517]
Length = 629
Score = 191 bits (485), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 146/460 (31%), Positives = 224/460 (48%), Gaps = 87/460 (18%)
Query: 14 WMRSP---VDVSLFEDCPLD-HLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGL-- 67
WM S D S+ + P D + L P+L ++ FP+Q + +TI P +
Sbjct: 163 WMNSTKIYYDNSMIK--PYDTYGSLLQPKLLQNIKKYFSQETFPIQ-TILLDTILPLINF 219
Query: 68 --------FER---DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116
F R D+ +N+ TGSGKTL+Y++PI+QTLSNR + LR L+++PT+ L Q
Sbjct: 220 SWSSTKKNFTRRVGDILVNASTGSGKTLAYSIPIIQTLSNRKINKLRCLIIVPTKMLIHQ 279
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDIL 176
V + ++ L + + ++S+ +E S L LQ DIL
Sbjct: 280 VFETLQKLSSGTSLVISTSKLENSLREEHSRL--------------------LQVEPDIL 319
Query: 177 VATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDA 236
+ TPGRL+D + + + +L++L +LV+DE DRLL +++Q W +L +D S
Sbjct: 320 IITPGRLVDLL-SMKSISLKNLKFLVLDEADRLLNQSFQNWSEELLHSLNNDK----SQV 374
Query: 237 STFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP-LFLT 295
T LP +VKMV SATLT + KL L L++P LFLT
Sbjct: 375 DT-LPG-----------------------NVVKMVFSATLTTNTEKLNTLRLYNPKLFLT 410
Query: 296 TGETRYKLPERLESYKLICESKLKPLY--------LVALLQSLGEEKCIVFTSSVESTHR 347
Y LP++L+ IC K LY L +Q + K ++F S E++ R
Sbjct: 411 QSVKLYNLPKKLQETN-ICIPTAKSLYKPLFLLHLLKKKVQESIDNKILIFVKSNEASLR 469
Query: 348 LCTLLNHFGE-----LRIKIKEYSGLQRQSVRSKTLKAFREGK---IQVLVSSDAMTRGM 399
L TLL+ E + I + +S +K + F + K + +L+++D M+RG+
Sbjct: 470 LATLLSVMAEKFNSSTSLLINSINSNNTKSQNNKIVNEFGQNKGSSMHILITTDLMSRGI 529
Query: 400 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439
D+ + NV+NYD P + Y+HR GRTARA G LL
Sbjct: 530 DINSITNVINYDLPISSQQYVHRVGRTARANMDGNAINLL 569
>gi|444321634|ref|XP_004181473.1| hypothetical protein TBLA_0F04210 [Tetrapisispora blattae CBS 6284]
gi|387514517|emb|CCH61954.1| hypothetical protein TBLA_0F04210 [Tetrapisispora blattae CBS 6284]
Length = 639
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 134/432 (31%), Positives = 219/432 (50%), Gaps = 80/432 (18%)
Query: 52 FPVQVAVWQETIGPGL----------FER---DLCINSPTGSGKTLSYALPIVQTLSNRA 98
FP+Q + +T+ P L F R D+ +N+ TGSGKTL Y +PI+Q LS+R
Sbjct: 194 FPIQ-TILLDTVLPILNFSLSITKKHFTRRVGDILVNASTGSGKTLGYCIPIIQALSSRK 252
Query: 99 VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGI 158
V LR+L++LPT+ L QV D + +A L + ++ ++S+ +E + +K+
Sbjct: 253 VNKLRSLIILPTKLLINQVFDTLSKLAEGTSLIISISKLENSLKEEHQKFLKQ------- 305
Query: 159 CYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWL 218
+P DIL+ TPGRL+DH+ L++L LV+DE DRLL +++Q W
Sbjct: 306 --EP-----------DILIMTPGRLVDHL-QLNSINLKNLKMLVLDEADRLLNQSFQNWC 351
Query: 219 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ 278
++ + +E+ DK ++K V SATLT
Sbjct: 352 SELM----------------------------NKIKLEKN--DKLPGNIIKFVFSATLTT 381
Query: 279 DPNKLAQLDLHHP-LFLTTGETRYKLPERLESYKL---ICESKLKPLYLVALLQSLGEEK 334
+ KL +L + P LF+ Y LP L+ + + +S KPL L+ L +L K
Sbjct: 382 NTEKLNKLQFYKPKLFIMDTVKLYNLPTTLQEFNINIPTAKSVYKPLILLRLFANLKRSK 441
Query: 335 CIVFTSSVESTHRLCTLLNHFGE--LRIKIKEYSGLQRQSVRS---KTLKAFR---EGKI 386
+VF S E++ RL +LL + L + ++ S + + R+ + + AF E I
Sbjct: 442 ILVFVKSNEASLRLASLLKMMNDKNLITETQDISSINSNNSRTDNKRLVNAFSSTIENSI 501
Query: 387 -QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 445
++L+++D ++RG+D+ + +V+NYD P + Y+HR GRTARAG G+ + +L K
Sbjct: 502 NKILITTDLISRGIDINDITHVINYDLPISSQQYVHRCGRTARAGSEGQAYNMLVGKGEK 561
Query: 446 RFKKLLQKADND 457
+F Q+ DND
Sbjct: 562 QF--WTQQIDND 571
>gi|189208975|ref|XP_001940820.1| ATP-dependent RNA helicase DBP6 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187976913|gb|EDU43539.1| ATP-dependent RNA helicase DBP6 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 643
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 155/502 (30%), Positives = 231/502 (46%), Gaps = 100/502 (19%)
Query: 14 WMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGL---FER 70
W+ P + + P L +DP LQ G VQ A + P L FE+
Sbjct: 136 WLAQPTTIEASKTVPFSEL-GVDPFFAKTLQKQGFKDALAVQTA-----LVPMLHTGFEQ 189
Query: 71 ---DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 127
D+C+++ TGSGKTL+Y LPI++ L +R V L A+VV+P+R L Q V +
Sbjct: 190 HLGDICVSAKTGSGKTLAYLLPIIEQLKDRTVPVLSAIVVVPSRQLVNQALQVAEELCSG 249
Query: 128 VGLSVGLAVGQSSIADEISELIK-RPKLEAGICYDP-------EDVLQELQSAV----DI 175
+ VG A+G + A E +LIK RP+ YDP E L++ Q+ +
Sbjct: 250 TKIKVGTALGNVAFATEQKQLIKLRPQ------YDPRRARELNEKALRQYQTGSMERRGL 303
Query: 176 LVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAW-----------LPTVLQL 224
GRL++HI T GF L + +LV+DE D+LL + +Q W P L
Sbjct: 304 YEDLKGRLVEHIENTTGFLLNAVRWLVIDEADQLLNQNFQGWANVLMDALHGETPVDLMN 363
Query: 225 TRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 284
+ + R DA++ A + RR +L K+VLSAT+ +D KL
Sbjct: 364 AQERIQKRERDANSIWSIALPA----RR-------------QLTKVVLSATMEKDVTKLG 406
Query: 285 QLDLHHP-LFLTTGETR-----------YKLPERLESYKL-ICESKLKPLYLVALLQSLG 331
L L P L + ET ++LP LE + + + + KPL+L+ +L +
Sbjct: 407 TLRLKRPKLVVVQDETAEVQPLDYEDDVFELPSTLEEFAVHVGDGSNKPLHLLYILLNY- 465
Query: 332 EEKCIVFTSS------------------VESTHRLCTLLNHFGELRIKIKEYSGLQRQSV 373
VF S +S ++ G + I K R
Sbjct: 466 -----VFPGSQTASVSSSDSSASDSSSDSDSDSGDTSVSQQTGRVLIFTKSTENASR--- 517
Query: 374 RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 433
K LK+F G I++L++SDA +RG+D+ +++V+NYD P I +Y+HR GRTARAG+ G
Sbjct: 518 --KLLKSFSSGAIKILIASDAASRGLDIPDISHVINYDLPTSITSYVHRVGRTARAGKPG 575
Query: 434 RCFTLLHKDEVKRFKKLLQKAD 455
+TL K E F K + K D
Sbjct: 576 EAWTLFTKTEAAWFLKQVAKGD 597
>gi|448535807|ref|XP_003871022.1| Dbp6 protein [Candida orthopsilosis Co 90-125]
gi|380355378|emb|CCG24896.1| Dbp6 protein [Candida orthopsilosis]
Length = 609
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 143/459 (31%), Positives = 225/459 (49%), Gaps = 72/459 (15%)
Query: 12 LPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFER- 70
L W+ +P V+ E L +D + L++ G + F VQV+V + TI P +
Sbjct: 154 LDWLTTPQYVTPNEKLSFQGL-GVDETVLNNLKSHGFNEAFAVQVSVLK-TIIPEIIANK 211
Query: 71 -------DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123
D+ +N+ TGSGKTL+Y++PIVQ L +R V +RA+V++PTR L QVK
Sbjct: 212 RRPDAFGDILVNASTGSGKTLAYSIPIVQALHDRVVPRVRAIVLVPTRPLINQVKTTMLQ 271
Query: 124 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL 183
++ LSV SI +E SE +K+ DI+V+TPGRL
Sbjct: 272 LSQGTNLSVVGLKNDISIKEE-SEKLKK-------------------MVPDIVVSTPGRL 311
Query: 184 MDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSA 243
++H+N +L L +LV+DE DRLL +++Q W LT +E +
Sbjct: 312 VEHLNIN-SISLSGLRFLVIDEADRLLNQSFQNWSSV---LTNKIDEQQ----------- 356
Query: 244 FGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR--- 300
+R ++ ++ K+V SATLT D KL+ L+ + P + +T
Sbjct: 357 ------------KRDISERWSLKVQKLVFSATLTTDAGKLSNLNFYKPRLIIVNDTEQLV 404
Query: 301 ---YKLPERLESYKL---ICESKLKPLYLVALLQSLGE-EKCIVFTSSVESTHRLCTLLN 353
+ +P L + + + ++ LKPL L L S + ++FT S ES RL LL
Sbjct: 405 NEMFSVPSLLSEFIIHYGVAKNSLKPLILAKFLASQKKLSNVLIFTKSNESCIRLSKLLQ 464
Query: 354 HFGE---LRIKIKEYSGLQ-RQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN 409
+ + I + + R SVR++ L+ F KI +L+++D + RG+D+ + +V+N
Sbjct: 465 LIMDAFSMSINVAFINSTNNRTSVRARVLRDFSTQKINILIATDLIARGIDLTTITDVIN 524
Query: 410 YDKPAYIKTYIHRAGRTARAGQLGRCFTLLH-KDEVKRF 447
YD P + Y+HR GRTARA G + + K E K F
Sbjct: 525 YDLPNSSREYVHRVGRTARAKNAGNAYNFVFGKGERKWF 563
>gi|444726438|gb|ELW66972.1| ATP-dependent RNA helicase DDX51 [Tupaia chinensis]
Length = 478
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 155/496 (31%), Positives = 229/496 (46%), Gaps = 81/496 (16%)
Query: 13 PWMRSP--VDVSLFED-CPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQ---ETIGPG 66
PW+ P V ++ D P++++P + P L+ L+ GISS FPVQ AV E+ G
Sbjct: 46 PWLAEPRRVKKNVTADLVPIENIPEVHPDLQKQLRAHGISSYFPVQAAVIPVVLESAANG 105
Query: 67 LF-------ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKD 119
DLC+++PTGSGKTL++ +P+V QV
Sbjct: 106 FLVGRGGYRPSDLCVSAPTGSGKTLAFVIPVV------------------------QVSK 141
Query: 120 VFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179
VF A L V L GQ +A E L+++ P+ + DI+VAT
Sbjct: 142 VFNVYTDATPLRVALLTGQKPLAKEQESLVQK---------TPDG----YRCLADIVVAT 188
Query: 180 PGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTF 239
PGRL+DHI+ T F+L+ L +L+ +LL A P LQ F +T
Sbjct: 189 PGRLVDHIDQTPAFSLQQLRFLM--PLQKLLFSATLTQNPEKLQQLGLYQPRLF---TTG 243
Query: 240 LPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET 299
LP G G P L+ L +D +++ F + E
Sbjct: 244 LPQRSPGDAGADVDGSSGGKYAFPAGLSPLGALALVLRKDFSRII-------CFTNSREN 296
Query: 300 RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELR 359
+ L KPL + L+ + + FT+S E++HRL L+ FG
Sbjct: 297 SHSLSS-------------KPLVALHLVLRKDFSRILCFTNSRENSHRLFLLVRAFGG-- 341
Query: 360 IKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTY 419
+ E+S R + LK F +GKIQ+L+S+DA RG+DV GV V+NYD P Y + Y
Sbjct: 342 VNAAEFSSRLGPGCRKRLLKQFEQGKIQLLISTDATARGIDVPGVELVLNYDAPQYPRAY 401
Query: 420 IHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYK-- 477
+HR GRTARAGQ G+ FTLL + + +RF ++L +A + H IP +++ L P Y+
Sbjct: 402 VHRVGRTARAGQTGQAFTLLLRVQERRFLQMLAEAGVPTLERHEIPGDVLQPLVPRYEEA 461
Query: 478 --SVRGGISDEAFWKV 491
+ G + +E KV
Sbjct: 462 LTELEGTVREEQKQKV 477
>gi|403215284|emb|CCK69783.1| hypothetical protein KNAG_0D00300 [Kazachstania naganishii CBS
8797]
Length = 637
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 145/420 (34%), Positives = 216/420 (51%), Gaps = 85/420 (20%)
Query: 52 FPVQVAVWQETIGPGL----------FER---DLCINSPTGSGKTLSYALPIVQTLSNRA 98
FP+Q A+ +TI P + F R D+ +N+ TGSGKTLSY +P+VQTLS+R
Sbjct: 210 FPIQTAIL-DTILPTINTTYKITKRNFTRRVGDVLVNAATGSGKTLSYTIPLVQTLSSRT 268
Query: 99 VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGI 158
V LRAL+++PT+ L QV D + + V + ++S+ +E +LI
Sbjct: 269 VNRLRALILVPTKPLIHQVYDTLTKLIKGTNIIVSFSKLENSLREEHQKLI--------- 319
Query: 159 CYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWL 218
S DIL+ TPGRL+DHIN + +L +L +LV+DE DRLL +++Q W
Sbjct: 320 -----------NSEPDILIVTPGRLVDHINL-KSISLRNLKFLVLDEADRLLNQSFQNWC 367
Query: 219 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYP-RLVKMVLSATLT 277
++Q ++ +N P P ++KMV SATLT
Sbjct: 368 HELMQQLDTEKQNV-----------------------------DPMPGNVIKMVFSATLT 398
Query: 278 QDPNKLAQLDLHHP-LFLTTGETRYKLPERLESYKL---ICESKLKPLYLVALLQ----S 329
+ KL L L++P LF+T Y LP L+ Y + +S KPL+L+ LLQ +
Sbjct: 399 TNTAKLHDLKLYNPRLFVTDSVKLYNLPPTLQEYNIHIPTAKSLYKPLFLLRLLQLKTTT 458
Query: 330 LGEE----KCIVFTSSVESTHRLCTL---LNHFGELRIKIKEYSGLQRQSVRSKTLKAF- 381
GEE K +VF S +++ RL +L LN G++ + + + + R L F
Sbjct: 459 EGEEKQRAKVLVFVKSNQNSLRLASLLQILNKEGDMTVHSINSNNSKVDNKR--LLAEFS 516
Query: 382 RE--GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439
RE QVL+++D M+RG+D+ + +VVNYD P + Y+HR GRTARA G + LL
Sbjct: 517 RETASSTQVLITTDLMSRGIDINNITDVVNYDVPLSSQQYVHRCGRTARANAAGFAYNLL 576
>gi|207341548|gb|EDZ69573.1| YNR038Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 515
Score = 188 bits (477), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 142/472 (30%), Positives = 227/472 (48%), Gaps = 94/472 (19%)
Query: 49 SSLFPVQVAVWQETIGPGL----------FER---DLCINSPTGSGKTLSYALPIVQTLS 95
++ FP+Q ++ ++I P L F R D+ +N+ TGSGKTL+Y++PIVQTL
Sbjct: 81 TNTFPIQ-SIILDSILPVLNFTLNVSKRNFTRRIGDILVNAATGSGKTLAYSIPIVQTLF 139
Query: 96 NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLE 155
R + LR ++++PT+ L QV + L V +A ++S+ DE +L LE
Sbjct: 140 KRQINRLRCIIIVPTKLLINQVYTTLTKLTQGTSLIVSIAKLENSLKDEHKKL---SNLE 196
Query: 156 AGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 215
DIL+ TPGRL+DH+N + L++L +L++DE DRLL +++Q
Sbjct: 197 P-----------------DILITTPGRLVDHLNM-KSINLKNLKFLIIDEADRLLNQSFQ 238
Query: 216 AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSAT 275
W P ++ ++D + LP ++KM+ SAT
Sbjct: 239 GWCPKLMSHLKTDKLDT-------LPG-----------------------NVIKMIFSAT 268
Query: 276 LTQDPNKLAQLDLHHP-LFLTTGETRYKLPERLESYKL---ICESKLKPLYLV-ALLQSL 330
LT + KL L+L+ P LFL + Y+LP +L + + +S KPL L+ ++ Q +
Sbjct: 269 LTTNTEKLNGLNLYKPKLFLKQTDKLYQLPNKLNEFNINIPTAKSVYKPLILLYSICQFM 328
Query: 331 GEE----KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQR-------------QSV 373
K ++F S ES+ RL LL E R + LQ ++
Sbjct: 329 AHSPIAAKILIFVKSNESSIRLSKLLQLICESRSQSSVLKNLQNLAVSINSVNSNNSKAE 388
Query: 374 RSKTLKAF----REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA 429
K + F I +L+++D M+RG+D+ + V+NYD P + Y+HR GRTARA
Sbjct: 389 NKKIVANFSHHSESAGITILITTDIMSRGIDINDITQVINYDPPMSSQQYVHRVGRTARA 448
Query: 430 GQLGRCFTLL-HKDEVKRFKKLLQKADNDSCPIH--SIPSSLIESLRPVYKS 478
+LG + LL + E F L + D D + + +L+ES +Y S
Sbjct: 449 NELGSAYNLLVGRGERTFFDDLNKDLDRDGKSVQPLELDFTLLESDSELYTS 500
>gi|6324366|ref|NP_014436.1| Dbp6p [Saccharomyces cerevisiae S288c]
gi|1730678|sp|P53734.1|DBP6_YEAST RecName: Full=ATP-dependent RNA helicase DBP6; AltName: Full=DEAD
box protein 6
gi|1302541|emb|CAA96318.1| unnamed protein product [Saccharomyces cerevisiae]
gi|285814686|tpg|DAA10580.1| TPA: Dbp6p [Saccharomyces cerevisiae S288c]
gi|392297030|gb|EIW08131.1| Dbp6p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 629
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 142/472 (30%), Positives = 227/472 (48%), Gaps = 94/472 (19%)
Query: 49 SSLFPVQVAVWQETIGPGL----------FER---DLCINSPTGSGKTLSYALPIVQTLS 95
++ FP+Q ++ ++I P L F R D+ +N+ TGSGKTL+Y++PIVQTL
Sbjct: 195 TNTFPIQ-SIILDSILPVLNFTLNVSKRNFTRRIGDILVNAATGSGKTLAYSIPIVQTLF 253
Query: 96 NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLE 155
R + LR ++++PT+ L QV + L V +A ++S+ DE +L LE
Sbjct: 254 KRQINRLRCIIIVPTKLLINQVYTTLTKLTQGTSLIVSIAKLENSLKDEHKKL---SNLE 310
Query: 156 AGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 215
DIL+ TPGRL+DH+N + L++L +L++DE DRLL +++Q
Sbjct: 311 P-----------------DILITTPGRLVDHLNM-KSINLKNLKFLIIDEADRLLNQSFQ 352
Query: 216 AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSAT 275
W P ++ ++D + LP ++KM+ SAT
Sbjct: 353 GWCPKLMSHLKTDKLDT-------LPG-----------------------NVIKMIFSAT 382
Query: 276 LTQDPNKLAQLDLHHP-LFLTTGETRYKLPERLESYKL---ICESKLKPLYLV-ALLQSL 330
LT + KL L+L+ P LFL + Y+LP +L + + +S KPL L+ ++ Q +
Sbjct: 383 LTTNTEKLNGLNLYKPKLFLKQTDKLYQLPNKLNEFNINIPTAKSVYKPLILLYSICQFM 442
Query: 331 GEE----KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQR-------------QSV 373
K ++F S ES+ RL LL E R + LQ ++
Sbjct: 443 AHSPIAAKILIFVKSNESSIRLSKLLQLICESRSQSSVLKNLQNLAVSINSVNSNNSKAE 502
Query: 374 RSKTLKAF----REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA 429
K + F I +L+++D M+RG+D+ + V+NYD P + Y+HR GRTARA
Sbjct: 503 NKKIVANFSHHSESAGITILITTDIMSRGIDINDITQVINYDPPMSSQQYVHRVGRTARA 562
Query: 430 GQLGRCFTLL-HKDEVKRFKKLLQKADNDSCPIH--SIPSSLIESLRPVYKS 478
+LG + LL + E F L + D D + + +L+ES +Y S
Sbjct: 563 NELGSAYNLLVGRGERTFFDDLNKDLDRDGKSVQPLELDFTLLESDSELYTS 614
>gi|259148989|emb|CAY82233.1| Dbp6p [Saccharomyces cerevisiae EC1118]
gi|323346760|gb|EGA81041.1| Dbp6p [Saccharomyces cerevisiae Lalvin QA23]
gi|365763421|gb|EHN04950.1| Dbp6p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 629
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 142/472 (30%), Positives = 227/472 (48%), Gaps = 94/472 (19%)
Query: 49 SSLFPVQVAVWQETIGPGL----------FER---DLCINSPTGSGKTLSYALPIVQTLS 95
++ FP+Q ++ ++I P L F R D+ +N+ TGSGKTL+Y++PIVQTL
Sbjct: 195 TNTFPIQ-SIILDSILPVLNFTLNVSKRNFTRRIGDILVNAATGSGKTLAYSIPIVQTLF 253
Query: 96 NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLE 155
R + LR ++++PT+ L QV + L V +A ++S+ DE +L LE
Sbjct: 254 KRQINRLRCIIIVPTKLLINQVYTTLTKLTQGTSLIVSIAKLENSLKDEHKKL---SNLE 310
Query: 156 AGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 215
DIL+ TPGRL+DH+N + L++L +L++DE DRLL +++Q
Sbjct: 311 P-----------------DILITTPGRLVDHLNM-KSINLKNLKFLIIDEADRLLNQSFQ 352
Query: 216 AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSAT 275
W P ++ ++D + LP ++KM+ SAT
Sbjct: 353 GWCPKLMSHLKTDKLDT-------LPG-----------------------NVIKMIFSAT 382
Query: 276 LTQDPNKLAQLDLHHP-LFLTTGETRYKLPERLESYKL---ICESKLKPLYLV-ALLQSL 330
LT + KL L+L+ P LFL + Y+LP +L + + +S KPL L+ ++ Q +
Sbjct: 383 LTTNTEKLNGLNLYKPKLFLKQTDKLYQLPNKLNEFNINIPTAKSVYKPLILLYSICQFM 442
Query: 331 GEE----KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQR-------------QSV 373
K ++F S ES+ RL LL E R + LQ ++
Sbjct: 443 AHSPIAAKILIFVKSNESSIRLSKLLQLICESRSQSSVLKNLQNLAVSINSVNSNNSKAE 502
Query: 374 RSKTLKAF----REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA 429
K + F I +L+++D M+RG+D+ + V+NYD P + Y+HR GRTARA
Sbjct: 503 NKKIVANFSHHSESAGITILITTDIMSRGIDINDITQVINYDPPMSSQQYVHRVGRTARA 562
Query: 430 GQLGRCFTLL-HKDEVKRFKKLLQKADNDSCPIH--SIPSSLIESLRPVYKS 478
+LG + LL + E F L + D D + + +L+ES +Y S
Sbjct: 563 NELGSAYNLLVGRGERTFFDDLNKDLDRDGKSVQPLELDFTLLESDSELYTS 614
>gi|256273352|gb|EEU08290.1| Dbp6p [Saccharomyces cerevisiae JAY291]
Length = 629
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 142/469 (30%), Positives = 225/469 (47%), Gaps = 94/469 (20%)
Query: 52 FPVQVAVWQETIGPGL----------FER---DLCINSPTGSGKTLSYALPIVQTLSNRA 98
FP+Q ++ ++I P L F R D+ +N+ TGSGKTL+Y++PIVQTL R
Sbjct: 198 FPIQ-SIILDSILPVLNFTLNVSKRNFTRRIGDILVNAATGSGKTLAYSIPIVQTLFKRQ 256
Query: 99 VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGI 158
+ LR ++++PT+ L QV + L V +A ++S+ DE +L LE
Sbjct: 257 INRLRCIIIVPTKLLINQVYTTLTKLTQGTSLIVSIAKLENSLKDEHKKL---SNLEP-- 311
Query: 159 CYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWL 218
DIL+ TPGRL+DH+N + L++L +L++DE DRLL +++Q W
Sbjct: 312 ---------------DILITTPGRLVDHLNM-KSINLKNLKFLIIDEADRLLNQSFQGWC 355
Query: 219 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ 278
P ++ ++D + LP ++KM+ SATLT
Sbjct: 356 PKLMSHLKTDKLDT-------LPG-----------------------NVIKMIFSATLTT 385
Query: 279 DPNKLAQLDLHHP-LFLTTGETRYKLPERLESYKL---ICESKLKPLYLV-ALLQSLGEE 333
+ KL L+L+ P LFL + Y+LP +L + + +S KPL L+ ++ Q +
Sbjct: 386 NTEKLNGLNLYKPKLFLKQTDKLYQLPNKLNEFNINIPTAKSVYKPLILLYSICQFMAHS 445
Query: 334 ----KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQR-------------QSVRSK 376
K ++F S ES+ RL LL E R + LQ ++ K
Sbjct: 446 PIAAKILIFVKSNESSIRLSKLLQLICESRSQSSVLKNLQNLAVSINSVNSNNSKAENKK 505
Query: 377 TLKAF----REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL 432
+ F I +L+++D M+RG+D+ + V+NYD P + Y+HR GRTARA +L
Sbjct: 506 IVANFSHHSESAGITILITTDIMSRGIDINDITQVINYDPPMSSQQYVHRVGRTARANEL 565
Query: 433 GRCFTLL-HKDEVKRFKKLLQKADNDSCPIH--SIPSSLIESLRPVYKS 478
G + LL + E F L + D D + + +L+ES +Y S
Sbjct: 566 GSAYNLLVGRGERTFFDDLNKDLDRDGKSVQPLELDFTLLESDSELYTS 614
>gi|190408963|gb|EDV12228.1| ATP-dependent RNA helicase DBP6 [Saccharomyces cerevisiae RM11-1a]
Length = 629
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 142/472 (30%), Positives = 227/472 (48%), Gaps = 94/472 (19%)
Query: 49 SSLFPVQVAVWQETIGPGL----------FER---DLCINSPTGSGKTLSYALPIVQTLS 95
++ FP+Q ++ ++I P L F R D+ +N+ TGSGKTL+Y++PIVQTL
Sbjct: 195 TNTFPIQ-SIILDSILPVLNFTLNASKRNFTRRIGDILVNAATGSGKTLAYSIPIVQTLF 253
Query: 96 NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLE 155
R + LR ++++PT+ L QV + L V +A ++S+ DE +L LE
Sbjct: 254 KRQINRLRCIIIVPTKLLINQVYTTLTKLTQGTSLIVSIAKLENSLKDEHKKL---SNLE 310
Query: 156 AGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 215
DIL+ TPGRL+DH+N + L++L +L++DE DRLL +++Q
Sbjct: 311 P-----------------DILITTPGRLVDHLNM-KSINLKNLKFLIIDEADRLLNQSFQ 352
Query: 216 AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSAT 275
W P ++ ++D + LP ++KM+ SAT
Sbjct: 353 GWCPKLMSHLKTDKLDT-------LPG-----------------------NVIKMIFSAT 382
Query: 276 LTQDPNKLAQLDLHHP-LFLTTGETRYKLPERLESYKL---ICESKLKPLYLV-ALLQSL 330
LT + KL L+L+ P LFL + Y+LP +L + + +S KPL L+ ++ Q +
Sbjct: 383 LTTNTEKLNGLNLYKPKLFLKQTDKLYQLPNKLNEFNINIPTAKSVYKPLILLYSICQFM 442
Query: 331 GEE----KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQR-------------QSV 373
K ++F S ES+ RL LL E R + LQ ++
Sbjct: 443 AHSPIAAKILIFVKSNESSIRLSKLLQLICESRSQSSVLKNLQNLAVSINSVNSNNSKAE 502
Query: 374 RSKTLKAF----REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA 429
K + F I +L+++D M+RG+D+ + V+NYD P + Y+HR GRTARA
Sbjct: 503 NKKIVANFSHHSESAGITILITTDIMSRGIDINDITQVINYDPPMSSQQYVHRVGRTARA 562
Query: 430 GQLGRCFTLL-HKDEVKRFKKLLQKADNDSCPIH--SIPSSLIESLRPVYKS 478
+LG + LL + E F L + D D + + +L+ES +Y S
Sbjct: 563 NELGSAYNLLVGRGERTFFDDLNKDLDRDGKSVQPLELDFTLLESDSELYTS 614
>gi|160380625|sp|A6ZSB3.1|DBP6_YEAS7 RecName: Full=ATP-dependent RNA helicase DBP6; AltName: Full=DEAD
box protein 6
gi|151944567|gb|EDN62845.1| DEAD box protein [Saccharomyces cerevisiae YJM789]
Length = 629
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 142/472 (30%), Positives = 227/472 (48%), Gaps = 94/472 (19%)
Query: 49 SSLFPVQVAVWQETIGPGL----------FER---DLCINSPTGSGKTLSYALPIVQTLS 95
++ FP+Q ++ ++I P L F R D+ +N+ TGSGKTL+Y++PIVQTL
Sbjct: 195 TNTFPIQ-SIILDSILPVLNFTLNVSKRNFTRRIGDILVNAATGSGKTLAYSIPIVQTLF 253
Query: 96 NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLE 155
R + LR ++++PT+ L QV + L V +A ++S+ DE +L LE
Sbjct: 254 KRQINRLRCIIIVPTKLLINQVYTTLTKLTQGTSLIVSIAKLENSLKDEHKKL---SNLE 310
Query: 156 AGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 215
DIL+ TPGRL+DH+N + L++L +L++DE DRLL +++Q
Sbjct: 311 P-----------------DILITTPGRLVDHLNM-KSINLKNLKFLIIDEADRLLNQSFQ 352
Query: 216 AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSAT 275
W P ++ ++D + LP ++KM+ SAT
Sbjct: 353 GWCPKLMSHLKTDKLDT-------LPG-----------------------NVIKMIFSAT 382
Query: 276 LTQDPNKLAQLDLHHP-LFLTTGETRYKLPERLESYKL---ICESKLKPLYLV-ALLQSL 330
LT + KL L+L+ P LFL + Y+LP +L + + +S KPL L+ ++ Q +
Sbjct: 383 LTTNTEKLNGLNLYKPKLFLKQTDKLYQLPNKLNEFNINIPTAKSIYKPLILLYSICQFM 442
Query: 331 GEE----KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQR-------------QSV 373
K ++F S ES+ RL LL E R + LQ ++
Sbjct: 443 AHSPIAAKILIFVKSNESSIRLSKLLQLICESRSQSSVLKNLQNLAVSINSVNSNNSKAE 502
Query: 374 RSKTLKAF----REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA 429
K + F I +L+++D M+RG+D+ + V+NYD P + Y+HR GRTARA
Sbjct: 503 NKKIVANFSHPSESAGITILITTDIMSRGIDINDITQVINYDPPMSSQQYVHRVGRTARA 562
Query: 430 GQLGRCFTLL-HKDEVKRFKKLLQKADNDSCPIH--SIPSSLIESLRPVYKS 478
+LG + LL + E F L + D D + + +L+ES +Y S
Sbjct: 563 NELGSAYNLLVGRGERTFFDDLNKDLDRDGKSVQPLELDFTLLESDSELYTS 614
>gi|50310747|ref|XP_455395.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74660305|sp|Q6CKZ4.1|DBP6_KLULA RecName: Full=ATP-dependent RNA helicase DBP6
gi|49644531|emb|CAG98103.1| KLLA0F06941p [Kluyveromyces lactis]
Length = 630
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 135/436 (30%), Positives = 217/436 (49%), Gaps = 83/436 (19%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETI---------GPGLFER---DLCINSPTGSGK 82
LD RL + + S FP+Q ++ + + LF R D+ +N+ TGSGK
Sbjct: 182 LDARLLKNITSNFSSETFPIQTILFDKVLPLLNSSFKANRKLFTRRVGDILVNASTGSGK 241
Query: 83 TLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIA 142
TL+Y++P+VQ L +R V +RA++++PT+ L QV D + ++ L+V ++ ++S+
Sbjct: 242 TLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQGTSLNVSMSKLENSLK 301
Query: 143 DEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLV 202
+E ++ L ++ DIL+ TPGRL+DH+ F L+ L +LV
Sbjct: 302 EEHNKF--------------------LYNSPDILIITPGRLVDHLQM-ESFDLKTLKFLV 340
Query: 203 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDK 262
+DE DRLL +++Q W + +D ++ +R G
Sbjct: 341 LDEADRLLNQSFQNWNQVLFHHLTNDKQD-------------------KRPG-------- 373
Query: 263 PYPRLVKMVLSATLTQDPNKLAQLDLHHP-LFLTTGETRYKLPERLESYKL---ICESKL 318
++KMV SATLT + KL L LH+P +FLT Y +P++L+ + +S
Sbjct: 374 ---NVIKMVFSATLTTNAEKLYNLYLHNPKIFLTDSVKLYSIPKKLQELNVNIPTAKSLF 430
Query: 319 KPLYLVALLQSLGEE-----KCIVFTSSVESTHRLCTLLNHFGELRIKIKEY-------- 365
KPL L+ ++ + K +VF S E++ RL +LL+ I EY
Sbjct: 431 KPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRLESLLHAMLGSGIIEDEYNMFLSSIH 490
Query: 366 SGLQRQSVRSKTLKAF--REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRA 423
S + + S R K ++ F E K VL+S+D M RG+D+ + +V+NYD P + Y+HR
Sbjct: 491 SNISKGSSR-KLIQEFASSEQKKSVLISTDIMARGIDINEITHVINYDLPISSQQYVHRC 549
Query: 424 GRTARAGQLGRCFTLL 439
GRTARA G LL
Sbjct: 550 GRTARANTEGIAINLL 565
>gi|323303225|gb|EGA57024.1| Dbp6p [Saccharomyces cerevisiae FostersB]
Length = 629
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 142/472 (30%), Positives = 227/472 (48%), Gaps = 94/472 (19%)
Query: 49 SSLFPVQVAVWQETIGPGL----------FER---DLCINSPTGSGKTLSYALPIVQTLS 95
++ FP+Q ++ ++I P L F R D+ +N+ TGSGKTL+Y++PIVQTL
Sbjct: 195 TNTFPIQ-SIILDSILPVLNFTLNVSKRNFTRRIGDILVNAATGSGKTLAYSIPIVQTLF 253
Query: 96 NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLE 155
R + LR ++++PT+ L QV + L V +A ++S+ DE +L LE
Sbjct: 254 KRQINRLRCIIIVPTKLLINQVYTTLTKLTQGXSLIVSIAKLENSLKDEHKKL---SNLE 310
Query: 156 AGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 215
DIL+ TPGRL+DH+N + L++L +L++DE DRLL +++Q
Sbjct: 311 P-----------------DILITTPGRLVDHLNM-KSINLKNLKFLIIDEADRLLNQSFQ 352
Query: 216 AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSAT 275
W P ++ ++D + LP ++KM+ SAT
Sbjct: 353 GWCPKLMSHLKTDKLDT-------LPG-----------------------NVIKMIFSAT 382
Query: 276 LTQDPNKLAQLDLHHP-LFLTTGETRYKLPERLESYKL---ICESKLKPLYLV-ALLQSL 330
LT + KL L+L+ P LFL + Y+LP +L + + +S KPL L+ ++ Q +
Sbjct: 383 LTTNTEKLNGLNLYKPKLFLKQTDKLYQLPNKLNEFNINIPTAKSVYKPLILLYSICQFM 442
Query: 331 GEE----KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQR-------------QSV 373
K ++F S ES+ RL LL E R + LQ ++
Sbjct: 443 AHSPIAAKILIFVKSNESSIRLSKLLQLICESRSQSSVLKNLQNLAVSINSVNSNNSKAE 502
Query: 374 RSKTLKAFRE----GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA 429
K + F I +L+++D M+RG+D+ + V+NYD P + Y+HR GRTARA
Sbjct: 503 NKKIVANFSHHSGSAGITILITTDIMSRGIDINDITQVINYDPPMSSQQYVHRVGRTARA 562
Query: 430 GQLGRCFTLL-HKDEVKRFKKLLQKADNDSCPIH--SIPSSLIESLRPVYKS 478
+LG + LL + E F L + D D + + +L+ES +Y S
Sbjct: 563 NELGSAYNLLVGRGERTFFDDLNKDLDRDGKSVQPLELDFTLLESDSELYTS 614
>gi|349580973|dbj|GAA26132.1| K7_Dbp6p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 629
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 134/437 (30%), Positives = 212/437 (48%), Gaps = 80/437 (18%)
Query: 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGL 130
D+ +N+ TGSGKTL+Y++PIVQTL R + LR ++++PT+ L QV + L
Sbjct: 229 DILVNAATGSGKTLAYSIPIVQTLFKRQINRLRCIIIVPTKLLINQVYTTLTKLTQGTSL 288
Query: 131 SVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT 190
V +A ++S+ DE +L LE DIL+ TPGRL+DH+N
Sbjct: 289 IVSIAKLENSLKDEHKKL---SNLEP-----------------DILITTPGRLVDHLNM- 327
Query: 191 RGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTI 250
+ L++L +L++DE DRLL +++Q W P ++ ++D + LP
Sbjct: 328 KSINLKNLKFLIIDEADRLLNQSFQGWCPKLMSHLKTDKLDT-------LPG-------- 372
Query: 251 RRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP-LFLTTGETRYKLPERLES 309
++KM+ SATLT + KL L+L+ P LFL + Y+LP +L
Sbjct: 373 ---------------NVIKMIFSATLTTNTEKLNGLNLYKPKLFLKQTDKLYQLPNKLNE 417
Query: 310 YKL---ICESKLKPLYLV-ALLQSLGEE----KCIVFTSSVESTHRLCTLLNHFGELRIK 361
+ + +S KPL L+ ++ Q + K ++F S ES+ RL LL E R +
Sbjct: 418 FNINIPTAKSIYKPLILLYSICQFMAHSPIAAKILIFVKSNESSIRLSKLLQLICESRSQ 477
Query: 362 IKEYSGLQR-------------QSVRSKTLKAF----REGKIQVLVSSDAMTRGMDVEGV 404
LQ ++ K + F I +L+++D M+RG+D+ +
Sbjct: 478 SSVLKNLQNLAVSINSVNSNNSKAENKKIVANFSHPSESAGITILITTDIMSRGIDINDI 537
Query: 405 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL-HKDEVKRFKKLLQKADNDSCPIH- 462
V+NYD P + Y+HR GRTARA +LG + LL + E F L + D D +
Sbjct: 538 TQVINYDPPMSSQQYVHRVGRTARANELGSAYNLLVGRGERTFFDDLNKDLDRDGKSVQP 597
Query: 463 -SIPSSLIESLRPVYKS 478
+ +L+ES +Y S
Sbjct: 598 LELDFTLLESDSELYTS 614
>gi|320581353|gb|EFW95574.1| ATP-dependent RNA helicase DBP6 (DEAD-box protein 6) [Ogataea
parapolymorpha DL-1]
Length = 549
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 155/474 (32%), Positives = 233/474 (49%), Gaps = 73/474 (15%)
Query: 2 EEAKKKSMPVLPWMRSPVDVSLFEDCPL-DHLPCLDPRLKVALQN-MGISSLFPVQVAVW 59
+E K K+ L W+ +P + + P D P LDP + L+ GI+S F VQ+ V
Sbjct: 71 QEQKNKN---LNWLSTPEYHNTTQTKPFKDFEPALDPVIIFNLETKFGITSAFSVQINVI 127
Query: 60 Q--------ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111
+ I P F D +N+ TGSGKTL+Y +PIVQ+L R V LR ++++PT+
Sbjct: 128 ESLLKDISANKIDPTPF-GDYLVNASTGSGKTLAYLIPIVQSLIGRVVPRLRCIILVPTK 186
Query: 112 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 171
L QV ++ I + L+ GL + ++ ++S + KL A
Sbjct: 187 PLITQV---YSNI---LQLTKGLDINALALRSDVSVKEEAKKLAA--------------I 226
Query: 172 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN 231
DI+V+TPGRL++H+ G L L +LVVDE DRLL +++Q W T++ T+ +N+
Sbjct: 227 KPDIVVSTPGRLVEHL--LNGMDLSQLRFLVVDEADRLLNQSFQNWCDTLI--TKLENDQ 282
Query: 232 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 291
++ + F S T++ C K++ SATLT D KL L L P
Sbjct: 283 KYGEGEDFYNSY-----TVK-CS--------------KLIFSATLTTDSEKLFHLKLFKP 322
Query: 292 LFLTTGETR------YKLPERLESYKLICESKL---KPLYLVALL-QSLGEEKCIVFTSS 341
+ Y++P L+ + KL KP+ L+ L Q +VFT S
Sbjct: 323 KLVVINNAEQLVNELYQIPPNLDEKFVRVNEKLAFFKPMVLLRYLEQPEYSSHGLVFTKS 382
Query: 342 VESTHRLCTLLNHFGE---LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRG 398
ES RL LL E L + I + + R+K LK F E +L+++D + RG
Sbjct: 383 NESAIRLARLLTLLSEKLGLDLNIMSVNYSLKSHERAKILKKFHEEG-GILIATDLIARG 441
Query: 399 MDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD-EVKRFKKLL 451
M++E + V+NYD P K YIHR GRTARA + G TL D + + FK+L+
Sbjct: 442 MNIESIKFVLNYDLPLSTKEYIHRVGRTARANRHGTAVTLCFGDGDFRWFKRLV 495
>gi|449017342|dbj|BAM80744.1| ATP-dependent RNA helicase [Cyanidioschyzon merolae strain 10D]
Length = 592
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 150/467 (32%), Positives = 227/467 (48%), Gaps = 101/467 (21%)
Query: 44 QNMGISSLFPVQVAVWQETIGPGLFER-DLCINSPTGSGKTLSYALPIVQTL-SNRAVRC 101
++ I+ LFP Q V L D+ + +PTGSGKTL YAL ++ L S+ ++ C
Sbjct: 73 RDYAITHLFPFQKEVLAYIRSTALTHSGDVLLGAPTGSGKTLIYALAVLLDLYSSASLFC 132
Query: 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD 161
+RALVVLPTR+LA QV+ +F + + LS +AV +S L +R
Sbjct: 133 VRALVVLPTRELARQVEGIFRTLTASAKLSARVAV--------LSLLRERV--------- 175
Query: 162 PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 221
P L Q+ + + TPGRL++ ++ L L +LV+DE DRL R++YQ WL +
Sbjct: 176 PRSDLLNRQA---VCITTPGRLVEALD-RHELLLADLRWLVIDEADRLFRQSYQNWLERL 231
Query: 222 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 281
LQ R R D P RL K++ SAT T+D
Sbjct: 232 LQ----------------------------RIDCARRVLDPPLRRLRKLLFSATQTRDAT 263
Query: 282 KLAQLDLHHPLFL-----TTG-----ETRYKLPERLESYKLIC-------ESKLKPLY-- 322
LA L LHHP++L T G + R L +++ + +C E KL+ L
Sbjct: 264 HLAALRLHHPVYLLCHASTEGARQPSKLRRGLMDQVPAGLTLCSLRFLSEEDKLRFLLRL 323
Query: 323 ------LVALLQSLGEE-------KCIVFTSSVESTHRLCTL---------LNHFGE--- 357
++A L+ ++ + ++F SVE+THRLC L H+
Sbjct: 324 IVCGPDILATLRDPSDQSSRPDHNRMLIFVKSVETTHRLCRFVQLASNWLWLRHYPSPVS 383
Query: 358 -----LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 412
R+ +E S +S R+ TL+ F+ G Q L+ SD M RGMD+ ++VVN+D
Sbjct: 384 TRDRGPRLLAEEISKQVSESARAATLERFQRGTTQWLICSDVMARGMDIAEASHVVNFDV 443
Query: 413 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFK-KLLQKADNDS 458
PA+ TY+HR GR ARAG+ G T L +++V F+ +++ + ND+
Sbjct: 444 PAHPTTYLHRVGRVARAGRPGTALTFLLRNQVGYFQSEIIARVRNDT 490
>gi|367006945|ref|XP_003688203.1| hypothetical protein TPHA_0M01940 [Tetrapisispora phaffii CBS 4417]
gi|357526510|emb|CCE65769.1| hypothetical protein TPHA_0M01940 [Tetrapisispora phaffii CBS 4417]
Length = 668
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 131/436 (30%), Positives = 219/436 (50%), Gaps = 78/436 (17%)
Query: 30 DHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGP------GLFER-------DLCINS 76
D+ LDP+L +Q + FP+Q + +T+ P G+ ++ D+ +N+
Sbjct: 200 DYKNQLDPKLLKNIQEKFSTETFPIQ-TILLDTVLPSLNFALGITKKNLTRRVGDILVNA 258
Query: 77 PTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAV 136
TGSGKTL+Y++PI+Q L R V LRA++++PT+ L QV + ++A L + +
Sbjct: 259 STGSGKTLAYSIPILQALIKRNVNKLRAIIIVPTKLLINQVFNTLNSLASGSSLIISTSR 318
Query: 137 GQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLE 196
+SS+ +E +L L + DI+V TPGRL+DH+ +++
Sbjct: 319 LESSLNEEHQKL--------------------LANEPDIVVVTPGRLVDHLQMG-SISVK 357
Query: 197 HLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVE 256
+L +LV+DE DRLL +++Q W +L R + S +P
Sbjct: 358 NLKFLVLDEADRLLNQSFQNWCNELLSKIR-------TQKSDIMPG-------------- 396
Query: 257 RGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP-LFLTTGETRYKLPERLESYKL--- 312
++KMV SATLT + KL L +HP LF+ Y +P++L+ +
Sbjct: 397 ---------NIIKMVFSATLTTNTEKLHSLQFYHPKLFVVDSVKLYNIPKKLQEFNFAIP 447
Query: 313 ICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRI----KIKEYSGL 368
+S KPL+L+ LL L K +VF S +++ RL +LL+ E + I+ +
Sbjct: 448 TAKSIYKPLFLLRLLDQLSNAKVLVFVKSNQNSLRLTSLLSKLIEQNLGKKHTIESVNSN 507
Query: 369 QRQSVRSKTLKAFREGKIQ-----VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRA 423
+ K + F + +++ VL+++D M+RG+D+ + +V+NYD P + Y+HR
Sbjct: 508 NSRGTNRKIVNDFSDDRLKKDVCTVLITTDIMSRGIDINNITDVINYDLPISSQQYVHRV 567
Query: 424 GRTARAGQLGRCFTLL 439
GRTARAG G + LL
Sbjct: 568 GRTARAGTEGTTYNLL 583
>gi|403286623|ref|XP_003934579.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Saimiri
boliviensis boliviensis]
Length = 547
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 132/451 (29%), Positives = 214/451 (47%), Gaps = 78/451 (17%)
Query: 12 LPWMRSPVDVSLFEDCPLD-HLPCLDPRLKVALQNMGISSLF-----------PVQVAVW 59
LP + S DCP + P ++ +++G++ + P ++ +
Sbjct: 86 LPETSGKMAASEEHDCPTETSQPVVEEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQI- 144
Query: 60 QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKD 119
E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+LA Q+ +
Sbjct: 145 -EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRELAFQISE 202
Query: 120 VFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179
F A+ ++G+ + VG + L K+P I++AT
Sbjct: 203 QFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH---------------------IIIAT 241
Query: 180 PGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTF 239
PGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D + TF
Sbjct: 242 PGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-------TF 294
Query: 240 LPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET 299
L SAT+T+ KL + L +P+ +
Sbjct: 295 L-------------------------------FSATMTKKVQKLQRAALKNPVKCAV-SS 322
Query: 300 RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELR 359
+Y+ E+L+ Y + SK K YLV +L L ++F S+ +T R LL + G
Sbjct: 323 KYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTA 382
Query: 360 IKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTY 419
I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D P + K Y
Sbjct: 383 IPLH---GQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDY 439
Query: 420 IHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
IHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 440 IHRVGRTARAGRSGKAITFVTQYDVELFQRI 470
>gi|365991671|ref|XP_003672664.1| hypothetical protein NDAI_0K02300 [Naumovozyma dairenensis CBS 421]
gi|343771440|emb|CCD27421.1| hypothetical protein NDAI_0K02300 [Naumovozyma dairenensis CBS 421]
Length = 709
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 142/448 (31%), Positives = 221/448 (49%), Gaps = 87/448 (19%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGL----------FER---DLCINSPTGSG 81
L+P+L ++ FP+Q + +TI P L F R D+ +N+ TGSG
Sbjct: 233 LEPKLLQNIEKYFSHETFPIQ-TILLDTILPTLNFSLKTTKKHFTRRVGDILVNASTGSG 291
Query: 82 KTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSI 141
KTL+Y++PI+QTLS R V LRAL+++PT+ L QV D + ++ GL + ++ ++S+
Sbjct: 292 KTLAYSIPIIQTLSKRKVNKLRALIIVPTKLLIHQVYDTLSKLSQGTGLIITMSKLENSL 351
Query: 142 ADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYL 201
+E KL+ +P DIL+ TPGRL+DH+N F L++L L
Sbjct: 352 KEE------HIKLQTN---EP-----------DILITTPGRLVDHLNM-NSFNLKNLKML 390
Query: 202 VVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKD 261
V+DE DRLL +++Q W +++ D + +P S+ T + G
Sbjct: 391 VLDEADRLLNQSFQNWCNELMKKLTIDKTPIYQ-----IPGDEISMSTDQMPG------- 438
Query: 262 KPYPRLVKMVLSATLTQDPNKLAQLDLHHP-LFLTTGETRYKLPERLESYKL-ICESKLK 319
++KM+ SATLT + KL L L P LF+ Y LP L+ Y + I +K
Sbjct: 439 ----NIIKMIFSATLTTNTQKLHDLKLFKPKLFVMDSVKLYHLPSTLQEYIINIPTAKSL 494
Query: 320 PLYLVALL--------QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL--- 368
L L Q + + +VF S ES+ RL TL L+I I + S L
Sbjct: 495 FKPLYLLKLLLKQYEDQQMQGSRILVFVKSNESSLRLATL------LKIMINKTSNLNES 548
Query: 369 --QRQSVRSKTLKA------------FREGKI---QVLVSSDAMTRGMDVEGVNNVVNYD 411
Q S+ S KA F + + ++L+++D M+RG+D+ + +V+NYD
Sbjct: 549 NYQINSINSNNSKADNRKLVTEFSKPFEDSSMLHAKILITTDLMSRGIDINNITDVINYD 608
Query: 412 KPAYIKTYIHRAGRTARAGQLGRCFTLL 439
P + Y+HR+GRTARA G + +L
Sbjct: 609 LPLSSQQYVHRSGRTARARSNGNAYNML 636
>gi|448113511|ref|XP_004202369.1| Piso0_001861 [Millerozyma farinosa CBS 7064]
gi|359465358|emb|CCE89063.1| Piso0_001861 [Millerozyma farinosa CBS 7064]
Length = 623
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 143/493 (29%), Positives = 223/493 (45%), Gaps = 71/493 (14%)
Query: 12 LPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQ--------ETI 63
L W+ SP+ P L + L +MG F VQ V + +
Sbjct: 161 LNWLTSPIYADPSFKRPFSDFKSLSAFMIRNLDSMGYEEAFSVQNTVLEILLQDIEENKL 220
Query: 64 GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123
P + DL +N+ TGSGKT++Y++PI++ L R V +RA++++PT+ L QVK +
Sbjct: 221 RPDI-RGDLLVNAATGSGKTIAYSIPIIEALHKRVVPRVRAIILVPTKPLITQVKSTMSQ 279
Query: 124 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL 183
++ L + SI +E +L ++P D++++TPGRL
Sbjct: 280 LSKGTSLRIVSFKSDISIQEEARKLK---------AHEP-----------DVIISTPGRL 319
Query: 184 MDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSA 243
++H+ + L L +LV+DE DRLL +++Q W V+ ++ D S+
Sbjct: 320 VEHL-SNNTLDLSALRFLVIDEADRLLNQSFQNWCDVVI--------SKIEDNSSRASMI 370
Query: 244 FGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR--- 300
F K + K++ SATLT D K+A L L P + +
Sbjct: 371 FDQWKL----------------KTQKLIFSATLTTDAGKIAGLQLQKPRLVIVNDKEQMV 414
Query: 301 ---YKLPERLESYKL---ICESKLKPLYLVA-LLQSLGEEKCIVFTSSVESTHRLCTLL- 352
+ +P L YK+ +S +KPL L LLQ+ +VF S E++ RL LL
Sbjct: 415 NEMFSVPPNLLEYKIQVGAAKSSMKPLILARYLLQNNKTSNVLVFAKSNEASIRLAKLLQ 474
Query: 353 ---NHFGELRIKIKEY--SGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV 407
N Y S SVR KTLK F K+ +LV++D + RG+D+ + +V
Sbjct: 475 ILMNSLTSSHQTSVAYLNSTNNSTSVRQKTLKEFSTQKVGILVATDLIARGIDILSITDV 534
Query: 408 VNYDKPAYIKTYIHRAGRTARAGQLGRCFTL-LHKDEVKRFKKLLQKADNDSCPIHSIPS 466
VNYD P + Y+HR GRTARA G +T K E K + K+ + SI
Sbjct: 535 VNYDLPISAREYVHRVGRTARANNHGNAYTFCFGKGEGKWYDKVSSSVGRSGKNVDSIAL 594
Query: 467 SLIESLRPVYKSV 479
+ + L P K++
Sbjct: 595 DVNDLLHPEDKTI 607
>gi|449666070|ref|XP_002163050.2| PREDICTED: probable ATP-dependent RNA helicase DDX47-like, partial
[Hydra magnipapillata]
Length = 431
Score = 185 bits (469), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 117/395 (29%), Positives = 200/395 (50%), Gaps = 64/395 (16%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117
+ +E I L +D+ + TGSGKT ++ALP++QTL + R L ALV+ PTR+LA Q+
Sbjct: 21 IQREAIPLALEGKDIIGLAETGSGKTGAFALPVLQTLLDNPQR-LYALVITPTRELAFQI 79
Query: 118 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177
+ F A+ ++G+ + VG + + L K+P I++
Sbjct: 80 SEQFEALGSSIGIKCAVIVGGVDLMTQSLALTKKPH---------------------IVI 118
Query: 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 237
ATPGRL+DH+ T+GF+L L YL++DE DR+L ++ + +L++ + S
Sbjct: 119 ATPGRLVDHLENTKGFSLRSLKYLIMDEADRILNMDFEEEVNKILKVIPKER-------S 171
Query: 238 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 297
T+L SAT+T+ KL + L +P+ +
Sbjct: 172 TYL-------------------------------FSATMTKKVAKLQRASLKNPVKVEVS 200
Query: 298 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 357
T+++ E+L+ + +K K YLV++L L I+F + + R+C LL H G
Sbjct: 201 -TKFQTVEKLQQSYIFIPNKFKDCYLVSILNDLAGNSFIIFCGTCNNVQRVCLLLRHLGF 259
Query: 358 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417
+ + G Q+ R L ++ +L+++D +RG+D+ V+ V+N+D P + K
Sbjct: 260 HAVPL---HGQMTQAKRLGALNKYKSKSRTILIATDVASRGLDIPHVDIVINFDIPTHSK 316
Query: 418 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 452
YIHR GRTARAG+ GR T + + +V+ ++++ Q
Sbjct: 317 DYIHRVGRTARAGRSGRSITFVTQYDVELYQRIEQ 351
>gi|441477761|dbj|BAM75193.1| vasa-like gene-2, partial [Pinctada fucata]
Length = 451
Score = 184 bits (468), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 118/393 (30%), Positives = 200/393 (50%), Gaps = 64/393 (16%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117
+ +E I L D+ + TGSGKT ++A+PI+Q L + R L AL++ PTR+LA Q+
Sbjct: 48 IQREAIPVALQGSDIIGLAETGSGKTGAFAIPILQKLLDSPQR-LYALILTPTRELAFQI 106
Query: 118 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177
+ F A+ A+G+ + VG + + L K+P I++
Sbjct: 107 SEQFEALGSAIGVKCAVVVGGIDMMSQSLMLAKKPH---------------------III 145
Query: 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 237
ATPGRL+DH+ T+GF L L +LV+DE DR+L ++ + +L++ + S
Sbjct: 146 ATPGRLIDHLENTKGFNLRALKFLVMDEADRILNMDFEQEVDKILKVIPRER-------S 198
Query: 238 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 297
T+L SAT+T+ KL + L +P+ +
Sbjct: 199 TYL-------------------------------YSATMTKKVAKLQRASLQNPVKVEVS 227
Query: 298 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 357
++Y+ ++L+ Y L +K K +YLV++L L +VFTS+ +T R +L + G
Sbjct: 228 -SKYQTVDKLQQYYLFVPAKFKDVYLVSVLNELAGNSFMVFTSTCANTQRTALMLRNLGL 286
Query: 358 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417
I + G QS R +L F+ +L+++D +RG+D+ V+ V+N+D P + K
Sbjct: 287 TAIPLH---GQMSQSKRLGSLNKFKSKSRSILIATDVASRGLDIPHVDVVINFDIPTHSK 343
Query: 418 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
YIHR GRTARAG+ G+ T + + +V+ ++++
Sbjct: 344 DYIHRVGRTARAGRSGKAITFVSQYDVELYQRI 376
>gi|448116165|ref|XP_004202989.1| Piso0_001861 [Millerozyma farinosa CBS 7064]
gi|359383857|emb|CCE79773.1| Piso0_001861 [Millerozyma farinosa CBS 7064]
Length = 615
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 142/493 (28%), Positives = 223/493 (45%), Gaps = 71/493 (14%)
Query: 12 LPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQ--------ETI 63
L W+ SP+ P L + L +MG F VQ V + +
Sbjct: 153 LNWLTSPIYADPSFKRPFSDFKSLSAFMIRNLNSMGYEEAFSVQNTVLEILLQDIEENRL 212
Query: 64 GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123
P + DL +N+ TGSGKT++Y++PI++ L R V +RA++++PT+ L QVK +
Sbjct: 213 RPDI-RGDLLVNAATGSGKTIAYSIPIIEALHERVVPRVRAIILVPTKPLITQVKSTMSQ 271
Query: 124 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL 183
++ LS+ S+ +E +L ++P D++++TPGRL
Sbjct: 272 LSKGTSLSIVSLKSDLSVQEEARKLK---------AHEP-----------DVIISTPGRL 311
Query: 184 MDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSA 243
++H+ + L L +LV+DE DRLL +++Q W V+ ++ D S+
Sbjct: 312 VEHL-SNSTLDLSALRFLVIDEADRLLNQSFQNWCDIVI--------SKIDDTSSRASMI 362
Query: 244 FGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR--- 300
F K + K++ SATLT D K+A L L P + +
Sbjct: 363 FDHWKL----------------KTQKLIFSATLTTDAGKIAGLQLQKPRLVIVNDKEQMV 406
Query: 301 ---YKLPERLESYKL---ICESKLKPLYLVA-LLQSLGEEKCIVFTSSVESTHRLCTLL- 352
+ +P L YK+ +S +KPL L L QS ++F S E++ RL LL
Sbjct: 407 NEMFSVPPNLLEYKIQVGAAKSSIKPLILARYLFQSGKTSNVLIFAKSNEASIRLAKLLQ 466
Query: 353 ---NHFGELRIKIKEY--SGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV 407
N Y S SVR KTLK F KI +LV++D + RG+D+ + +V
Sbjct: 467 ILMNSLSSSHQTSVAYLNSTNNSTSVRQKTLKDFSTQKIGILVATDLIARGIDILSITDV 526
Query: 408 VNYDKPAYIKTYIHRAGRTARAGQLGRCFTL-LHKDEVKRFKKLLQKADNDSCPIHSIPS 466
VNYD P + Y+HR GRTARA G +T K E + + K+ + SI
Sbjct: 527 VNYDLPISAREYVHRVGRTARANNHGNAYTFCFGKGEGRWYDKVSSSVGRSGKNVDSIAL 586
Query: 467 SLIESLRPVYKSV 479
+ + L P K++
Sbjct: 587 DVNDLLHPEDKTI 599
>gi|355683299|gb|AER97081.1| DEAD box polypeptide 47 [Mustela putorius furo]
Length = 454
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 125/398 (31%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 46 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 102
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 103 LAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH------------------- 143
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
+++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 144 --VIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 199
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
TFL SAT+T+ KL + L +P+
Sbjct: 200 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 223
Query: 293 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352
++Y+ E+L+ Y L SK K YLV +L L I+F S+ +T R LL
Sbjct: 224 KCAVS-SKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFIIFCSTCNNTQRTALLL 282
Query: 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 412
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 283 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 339
Query: 413 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 340 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 377
>gi|351711397|gb|EHB14316.1| Putative ATP-dependent RNA helicase DDX47 [Heterocephalus glaber]
Length = 454
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 132/443 (29%), Positives = 211/443 (47%), Gaps = 74/443 (16%)
Query: 8 SMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGL 67
S+P P + F+D + + C A +G + +Q+ E I L
Sbjct: 9 SLPEEPQPTVEEETKTFKDLGVTDVLC------EACDQLGWTKPTKIQI----EAIPMAL 58
Query: 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 127
RD+ + TGSGKT ++ALPI+ L + R L ALV+ PTR+LA Q+ + F A+ +
Sbjct: 59 QGRDIIGLAETGSGKTGAFALPILNALLDTPQR-LFALVLTPTRELAFQISEQFEALGSS 117
Query: 128 VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHI 187
+G+ + VG + L K+P +++ATPGRL+DH+
Sbjct: 118 IGVQCAVIVGGIDSMSQSLALAKKPH---------------------VVIATPGRLIDHL 156
Query: 188 NATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSL 247
T+GF L L YLV+DE DR+L ++ + +L++ D + TFL
Sbjct: 157 ENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-------TFL------- 202
Query: 248 KTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 307
SAT+T+ KL + L +P+ ++Y+ E+L
Sbjct: 203 ------------------------FSATMTKKVQKLQRAALKNPVKCAVS-SKYQTVEKL 237
Query: 308 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 367
+ Y L SK K YLV +L L ++F S+ +T R LL + G I + G
Sbjct: 238 QQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPL---HG 294
Query: 368 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 427
QS R +L F+ +L+++D +RG+D+ V+ VVN+D P + K YIHR GRTA
Sbjct: 295 QMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTA 354
Query: 428 RAGQLGRCFTLLHKDEVKRFKKL 450
RAG+ G+ T + + +V+ F+++
Sbjct: 355 RAGRSGKAITFVTQYDVELFQRI 377
>gi|148237396|ref|NP_001085167.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Xenopus laevis]
gi|47938654|gb|AAH72214.1| MGC81303 protein [Xenopus laevis]
Length = 448
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 122/398 (30%), Positives = 199/398 (50%), Gaps = 66/398 (16%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E I L RD+ + TGSGKT ++ALPI+QTL R L ALV+ PTR+
Sbjct: 42 PTKIQI--EAIPMALQGRDIIGLAETGSGKTGAFALPILQTLLESPQR-LYALVLTPTRE 98
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA Q+ + F A+ ++G+ + VG + + L K+P
Sbjct: 99 LAFQISEQFEALGSSIGVKSAVIVGGIDMMSQSLALAKKPH------------------- 139
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
I++ATPGRL+DH+ T+GF L + YLV+DE DR+L ++ + +L++ D +
Sbjct: 140 --IVIATPGRLIDHLENTKGFNLRAIKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 195
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
TFL SAT+T+ +KL + L P+
Sbjct: 196 -----TFL-------------------------------FSATMTKKVHKLQRAALKDPV 219
Query: 293 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352
++Y+ E+L+ + + SK K YLV +L L ++F S+ +T R+ LL
Sbjct: 220 KCAVS-SKYQTVEKLQQFYVFIPSKFKDSYLVYILNELAGNSFMIFCSTCNNTQRVALLL 278
Query: 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 412
+ G I + G Q+ R L F+ +L+++D +RG+D+ V+ V+N+D
Sbjct: 279 RNLGFTAIPLHGQMG---QNKRLGALNKFKAKSRSILLATDVASRGLDIPHVDVVINFDI 335
Query: 413 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 336 PTHSKDYIHRVGRTARAGRSGKAITFVSQYDVELFQRI 373
>gi|50547515|ref|XP_501227.1| YALI0B22572p [Yarrowia lipolytica]
gi|74660077|sp|Q6CDN5.1|DBP6_YARLI RecName: Full=ATP-dependent RNA helicase DBP6
gi|49647093|emb|CAG83480.1| YALI0B22572p [Yarrowia lipolytica CLIB122]
Length = 607
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 140/459 (30%), Positives = 223/459 (48%), Gaps = 62/459 (13%)
Query: 4 AKKKSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAV--W-- 59
++K + P +R+ V + + D L + L +G + F VQ AV W
Sbjct: 165 SRKTQLQTQPILRNATYVEIDDVGSFDEFD-LSKNMMKNLDTLGYTKAFSVQKAVIPWLL 223
Query: 60 --QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117
Q+ + P + DL +++ TGSGKT +Y +PI++ L +R V +RA+VVLPT+ L +QV
Sbjct: 224 AQQKLLAPDR-KPDLLVSASTGSGKTATYGIPIIEKLRDRIVPRIRAVVVLPTKPLVMQV 282
Query: 118 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177
+DV ++ LSV ++ ++ S +R LE DI+V
Sbjct: 283 RDVLENLSKGSSLSV------VALRNDRSTKRERAVLETA----------------DIVV 320
Query: 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 237
A PGRL++ + ++ +LVVDE DRLL + Y W +VLQ +N+ R
Sbjct: 321 AAPGRLVEQVKENPEL-FSYIEFLVVDEADRLLGQDYYDW-ASVLQ----NNQQRAQAGK 374
Query: 238 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP-LFLTT 296
T L + +R + ++ SATLT +P +A +D+H+P +F+
Sbjct: 375 TNLTEHY-----VR--------------NMQTLIFSATLTANPEHIASMDIHNPGVFVIG 415
Query: 297 GETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN--- 353
Y +P+ L + KPL L LL + +VFT S E+ R+ ++
Sbjct: 416 SSDSYSIPKSLTEIVTHVSAAEKPLMLCELLVQRDINRGVVFTKSSETAARVARMMEIMD 475
Query: 354 -HFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 412
KI S R +++K F +GKI LV +D ++RG+D V+NV+NYD
Sbjct: 476 ADIFHKDWKIAAVSAETSSVHRRRSMKQFIDGKIDFLVCTDLVSRGIDF-VVDNVINYDI 534
Query: 413 PAYIKTYIHRAGRTARAGQLGRCFTLLH-KDEVKRFKKL 450
P+ + Y+HR GRTARAG+ G +T L E K F+++
Sbjct: 535 PSGKREYVHRVGRTARAGREGNAYTFLTGSGEAKWFREI 573
>gi|301610482|ref|XP_002934775.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Xenopus (Silurana) tropicalis]
Length = 448
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 122/398 (30%), Positives = 198/398 (49%), Gaps = 66/398 (16%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E I L RD+ + TGSGKT ++ALPI+QTL R L ALV+ PTR+
Sbjct: 42 PTKIQI--EAIPVALQGRDIIGLAETGSGKTGAFALPILQTLLESPQR-LYALVLTPTRE 98
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA Q+ + F A+ +G+ + VG + + L K+P
Sbjct: 99 LAFQISEQFEALGSTIGVKSAVIVGGIDMMSQSLALAKKP-------------------- 138
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
+++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 139 -HVVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 195
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
TFL SAT+T+ KL + L P+
Sbjct: 196 -----TFL-------------------------------FSATMTKKVQKLQRAALKDPV 219
Query: 293 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352
++Y+ E+L+ + + SK K YLV +L L ++F S+ +T R+ LL
Sbjct: 220 KCAVS-SKYQTVEKLQQFYVFIPSKFKDSYLVYILNELAGNSFMIFCSTCNNTQRVALLL 278
Query: 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 412
+ G I + G Q+ R +L F+ +L+++D +RG+D+ V+ V+N+D
Sbjct: 279 RNLGFTAIPL---HGQMSQNKRLGSLNKFKAKSRSILLATDVASRGLDIPHVDVVINFDI 335
Query: 413 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 336 PTHSKDYIHRVGRTARAGRSGKAITFVSQYDVELFQRI 373
>gi|11121196|emb|CAC14786.1| DEAD box protein [Homo sapiens]
Length = 455
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 124/398 (31%), Positives = 197/398 (49%), Gaps = 66/398 (16%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 47 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 103
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 104 LAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH------------------- 144
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 145 --IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 200
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
TFL SAT+T+ KL + L +P+
Sbjct: 201 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 224
Query: 293 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352
++Y+ E+L+ Y + SK K YLV +L L ++F S+ +T R LL
Sbjct: 225 KCAVS-SKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 283
Query: 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 412
+ G I + G QS R +L F+ + +L+++D +RG+D+ V+ VVN+D
Sbjct: 284 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKESSILLATDVASRGLDIPHVDVVVNFDI 340
Query: 413 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 341 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>gi|354478220|ref|XP_003501313.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Cricetulus
griseus]
Length = 455
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 125/398 (31%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 47 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 103
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 104 LAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSIALAKKPH------------------- 144
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 145 --IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 200
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
TFL SAT+T+ KL + L +P+
Sbjct: 201 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 224
Query: 293 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352
++Y+ E+L+ Y L SK K YLV +L L ++F S+ +T R LL
Sbjct: 225 KCAV-SSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 283
Query: 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 412
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 284 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 340
Query: 413 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 341 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>gi|301765212|ref|XP_002918022.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
[Ailuropoda melanoleuca]
Length = 455
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 125/398 (31%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 47 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 103
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 104 LAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH------------------- 144
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 145 --IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 200
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
TFL SAT+T+ KL + L +P+
Sbjct: 201 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 224
Query: 293 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352
++Y+ E+L+ Y L SK K YLV +L L ++F S+ +T R LL
Sbjct: 225 KCAVS-SKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 283
Query: 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 412
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 284 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 340
Query: 413 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 341 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>gi|186703632|emb|CAQ43244.1| ATP-dependent RNA helicase DBP6 [Zygosaccharomyces rouxii]
Length = 628
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 139/435 (31%), Positives = 210/435 (48%), Gaps = 87/435 (20%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETI----------GPGLFER--DLCINSPTGSGK 82
L PRL +Q FP+Q + T+ L R D+ +N+ TGSGK
Sbjct: 188 LQPRLLANIQQFFSKDTFPIQTVLLDNTLPLLNFTLGVSKKNLTRRIGDILVNASTGSGK 247
Query: 83 TLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIA 142
TL+Y++PI++ LS R V LRALV++PT+ L QV D + +A GL + ++ ++S+
Sbjct: 248 TLAYSIPIIEALSKRTVNKLRALVIVPTKLLIGQVFDTMSKLAQGTGLIISISKLENSLK 307
Query: 143 DEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLV 202
+E + I Y+P DIL+ TPGRL+DH+ +++L LV
Sbjct: 308 EEHQKFIN---------YEP-----------DILIVTPGRLVDHLQIG-SINMKNLMMLV 346
Query: 203 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDK 262
+DE D LL +++Q W ++ RS ++ +P
Sbjct: 347 LDEADHLLNQSFQNWSAELMNNIRSQKLDQ-------MPG-------------------- 379
Query: 263 PYPRLVKMVLSATLTQDPNKLAQLDLHHP-LFLTTGETRYKLPERLESYKL---ICESKL 318
++KMV SATLT + KL L L++P LF+ Y LP++L+ Y + +S
Sbjct: 380 ---NVIKMVFSATLTTNTEKLHGLHLYNPKLFVKDSVKLYNLPDKLQEYNINVPTAKSIY 436
Query: 319 KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQ--SVRSK 376
KPL+L+ LL L K +VF S E++ RL LL I I+ G SV S
Sbjct: 437 KPLFLLHLLDKLHNAKILVFVKSNEASLRLAPLLT------IMIERKMGTPHNVLSVNSN 490
Query: 377 TLKAFREGKI------------QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAG 424
KA + + QVL+++D M+RG+D+ + +V+NYD P + Y+HR G
Sbjct: 491 NSKAENKRLVHQFATSNTSESNQVLITTDLMSRGIDINDITDVINYDPPISSQQYVHRCG 550
Query: 425 RTARAGQLGRCFTLL 439
RTARA G LL
Sbjct: 551 RTARAQGHGNAHNLL 565
>gi|327272750|ref|XP_003221147.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
[Anolis carolinensis]
Length = 445
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 123/398 (30%), Positives = 197/398 (49%), Gaps = 66/398 (16%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ V E+I L RD+ + TGSGKT ++ALPI+Q L R ALV+ PTR+
Sbjct: 39 PTKIQV--ESIPLALQGRDIIGLAETGSGKTGAFALPILQALLETPQRFF-ALVLTPTRE 95
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA Q+ + F A+ ++G+ + VG + + L K+P
Sbjct: 96 LAFQISEQFEALGSSIGVQTAVIVGGIDMMAQSLALAKKP-------------------- 135
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
+++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 136 -HVIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 192
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
TFL SAT+T+ KL + L P+
Sbjct: 193 -----TFL-------------------------------FSATMTKKVQKLQRAALKDPV 216
Query: 293 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352
++Y+ E+L+ Y + SK K YLV +L L ++F S+ +T R LL
Sbjct: 217 KCAVS-SKYQTVEKLQQYYVFIPSKFKDSYLVYILNELAGNSFMIFCSTCNNTQRTALLL 275
Query: 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 412
+ G I + G Q+ R +L F+ VL+++D +RG+D+ V+ V+N+D
Sbjct: 276 RNLGFTAIPL---HGQMNQNKRLGSLNKFKAKARSVLLATDVASRGLDIPHVDVVINFDI 332
Query: 413 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 333 PTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRI 370
>gi|348569354|ref|XP_003470463.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
[Cavia porcellus]
Length = 455
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 125/398 (31%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 46 PTKIQI--EAIPMALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 102
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 103 LAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPH------------------- 143
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 144 --IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 199
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
TFL SAT+T+ KL + L +P+
Sbjct: 200 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 223
Query: 293 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352
++Y+ E+L+ Y L SK K YLV +L L ++F S+ +T R LL
Sbjct: 224 KCAVS-SKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 282
Query: 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 412
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 283 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 339
Query: 413 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 340 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 377
>gi|27229058|ref|NP_080636.2| probable ATP-dependent RNA helicase DDX47 [Mus musculus]
gi|52782790|sp|Q9CWX9.2|DDX47_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX47; AltName:
Full=DEAD box protein 47
gi|26345792|dbj|BAC36547.1| unnamed protein product [Mus musculus]
gi|26368455|dbj|BAB26843.2| unnamed protein product [Mus musculus]
gi|66365081|gb|AAH95944.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Mus musculus]
gi|124297422|gb|AAI32243.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Mus musculus]
gi|124298172|gb|AAI32245.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Mus musculus]
gi|148678592|gb|EDL10539.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47, isoform CRA_b [Mus
musculus]
Length = 455
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 125/398 (31%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 47 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 103
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 104 LAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPH------------------- 144
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 145 --IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 200
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
TFL SAT+T+ KL + L +P+
Sbjct: 201 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 224
Query: 293 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352
++Y+ E+L+ Y L SK K YLV +L L ++F S+ +T R LL
Sbjct: 225 KCAVS-SKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 283
Query: 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 412
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 284 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 340
Query: 413 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 341 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>gi|440910729|gb|ELR60491.1| Putative ATP-dependent RNA helicase DDX47 [Bos grunniens mutus]
Length = 457
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 125/398 (31%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 49 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 105
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 106 LAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPH------------------- 146
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 147 --IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 202
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
TFL SAT+T+ KL + L +P+
Sbjct: 203 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 226
Query: 293 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352
++Y+ E+L+ Y L SK K YLV +L L ++F S+ +T R LL
Sbjct: 227 KCAVS-SKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 285
Query: 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 412
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 286 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 342
Query: 413 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 343 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 380
>gi|291230627|ref|XP_002735268.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 47-like
[Saccoglossus kowalevskii]
Length = 446
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 122/396 (30%), Positives = 198/396 (50%), Gaps = 66/396 (16%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117
+ +E+I L +D+ + TGSGKT ++ALPI+Q L R L AL++ PTR+LA Q+
Sbjct: 49 IQRESIPLALEGKDVIGLAETGSGKTGAFALPILQDLLEHPQR-LFALILTPTRELAFQI 107
Query: 118 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177
+ F A+ A+G+ + VG + + +L K+P ++V
Sbjct: 108 SEQFEALGSAIGIKCAVVVGGIDMMSQALQLAKKPH---------------------VVV 146
Query: 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 237
ATPGRL+DH+ T+GF L + YLV+DE DR+L ++ L +L
Sbjct: 147 ATPGRLVDHLENTKGFNLRSVKYLVMDEADRILNMDFEIELDKIL--------------- 191
Query: 238 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTT 296
K PR + L SAT+T+ KL + L +P+ +
Sbjct: 192 ------------------------KVIPRERRTYLYSATMTKKVAKLQRASLKNPVKVEV 227
Query: 297 GETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG 356
T+Y+ E+L Y L SK K +YLV +L L +VF S+ +T R+ +L + G
Sbjct: 228 N-TKYQTVEKLLQYYLFIPSKYKDVYLVYILNELAGNSFMVFCSTCNNTQRVALMLRNLG 286
Query: 357 ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYI 416
+ + G Q+ R L F+ +L+++D +RG+D+ V+ V+N+D P +
Sbjct: 287 LTAVPL---HGQMSQNKRLGMLNKFKGKDRSILIATDVASRGLDIPHVDIVINFDIPTHS 343
Query: 417 KTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 452
K YIHR GRTARAG+ G+ T + + +V+ ++++ Q
Sbjct: 344 KDYIHRVGRTARAGKSGKAITFVTQYDVELYQRIEQ 379
>gi|299829301|ref|NP_001015005.2| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Rattus norvegicus]
gi|149049184|gb|EDM01638.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47, isoform CRA_a [Rattus
norvegicus]
Length = 455
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 125/398 (31%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 47 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 103
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 104 LAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPH------------------- 144
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 145 --IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 200
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
TFL SAT+T+ KL + L +P+
Sbjct: 201 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 224
Query: 293 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352
++Y+ E+L+ Y L SK K YLV +L L ++F S+ +T R LL
Sbjct: 225 KCAVS-SKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 283
Query: 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 412
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 284 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 340
Query: 413 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 341 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>gi|344243858|gb|EGV99961.1| putative ATP-dependent RNA helicase DDX47 [Cricetulus griseus]
Length = 586
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 125/398 (31%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 178 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 234
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 235 LAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSIALAKKPH------------------- 275
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 276 --IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 331
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
TFL SAT+T+ KL + L +P+
Sbjct: 332 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 355
Query: 293 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352
++Y+ E+L+ Y L SK K YLV +L L ++F S+ +T R LL
Sbjct: 356 KCAV-SSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 414
Query: 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 412
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 415 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 471
Query: 413 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 472 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 509
>gi|149713746|ref|XP_001501494.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Equus caballus]
Length = 455
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 125/398 (31%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 47 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 103
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 104 LAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH------------------- 144
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 145 --IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 200
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
TFL SAT+T+ KL + L +P+
Sbjct: 201 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 224
Query: 293 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352
++Y+ E+L+ Y L SK K YLV +L L ++F S+ +T R LL
Sbjct: 225 KCAVS-SKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 283
Query: 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 412
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 284 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 340
Query: 413 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 341 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>gi|114052016|ref|NP_001039850.1| probable ATP-dependent RNA helicase DDX47 [Bos taurus]
gi|109825481|sp|Q29S22.1|DDX47_BOVIN RecName: Full=Probable ATP-dependent RNA helicase DDX47; AltName:
Full=DEAD box protein 47
gi|88758683|gb|AAI13208.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Bos taurus]
gi|296487253|tpg|DAA29366.1| TPA: probable ATP-dependent RNA helicase DDX47 [Bos taurus]
Length = 457
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 125/398 (31%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 49 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 105
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 106 LAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPH------------------- 146
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 147 --IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 202
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
TFL SAT+T+ KL + L +P+
Sbjct: 203 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 226
Query: 293 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352
++Y+ E+L+ Y L SK K YLV +L L ++F S+ +T R LL
Sbjct: 227 KCAVS-SKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 285
Query: 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 412
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 286 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 342
Query: 413 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 343 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 380
>gi|281349896|gb|EFB25480.1| hypothetical protein PANDA_006406 [Ailuropoda melanoleuca]
Length = 383
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 125/398 (31%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 18 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 74
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 75 LAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH------------------- 115
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 116 --IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 171
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
TFL SAT+T+ KL + L +P+
Sbjct: 172 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 195
Query: 293 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352
++Y+ E+L+ Y L SK K YLV +L L ++F S+ +T R LL
Sbjct: 196 KCAVS-SKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 254
Query: 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 412
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 255 RNLGFTAIPLH---GQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 311
Query: 413 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 312 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 349
>gi|426371741|ref|XP_004052800.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Gorilla gorilla gorilla]
Length = 455
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 125/398 (31%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ V E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 47 PTKIQV--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 103
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 104 LAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH------------------- 144
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 145 --IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 200
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
TFL SAT+T+ KL + L +P+
Sbjct: 201 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 224
Query: 293 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352
++Y+ E+L+ Y + SK K YLV +L L ++F S+ +T R LL
Sbjct: 225 KCAVS-SKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 283
Query: 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 412
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 284 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 340
Query: 413 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 341 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>gi|73997167|ref|XP_534885.2| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Canis lupus familiaris]
Length = 456
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 125/398 (31%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 47 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 103
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 104 LAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH------------------- 144
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 145 --IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 200
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
TFL SAT+T+ KL + L +P+
Sbjct: 201 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 224
Query: 293 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352
++Y+ E+L+ Y L SK K YLV +L L ++F S+ +T R LL
Sbjct: 225 KCAVS-SKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 283
Query: 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 412
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 284 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 340
Query: 413 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 341 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>gi|62897439|dbj|BAD96660.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1 variant [Homo
sapiens]
Length = 448
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 124/398 (31%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 40 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 96
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 97 LAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH------------------- 137
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 138 --IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVNPRDRK-- 193
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
TFL SAT+T+ KL + L +P+
Sbjct: 194 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 217
Query: 293 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352
++Y+ E+L+ Y + SK K YLV +L L ++F S+ +T R LL
Sbjct: 218 KCAVS-SKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 276
Query: 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 412
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 277 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 333
Query: 413 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 334 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 371
>gi|254580363|ref|XP_002496167.1| ZYRO0C12012p [Zygosaccharomyces rouxii]
gi|186703847|emb|CAQ43534.1| ATP-dependent RNA helicase DBP6 [Zygosaccharomyces rouxii]
gi|238939058|emb|CAR27234.1| ZYRO0C12012p [Zygosaccharomyces rouxii]
Length = 624
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 139/435 (31%), Positives = 210/435 (48%), Gaps = 87/435 (20%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETI----------GPGLFER--DLCINSPTGSGK 82
L PRL +Q FP+Q + T+ L R D+ +N+ TGSGK
Sbjct: 188 LQPRLLANIQQFFSKDTFPIQTVLLDNTLPLLNFTLGVSKKNLTRRIGDILVNASTGSGK 247
Query: 83 TLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIA 142
TL+Y++PI++ LS R V LRALV++PT+ L QV D + +A GL + ++ ++S+
Sbjct: 248 TLAYSIPIIEALSKRTVNKLRALVIVPTKLLIGQVFDTMSKLAQGTGLIISISKLENSLK 307
Query: 143 DEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLV 202
+E + I Y+P DIL+ TPGRL+DH+ +++L LV
Sbjct: 308 EEHQKFIN---------YEP-----------DILIVTPGRLVDHLQIG-SINMKNLMMLV 346
Query: 203 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDK 262
+DE D LL +++Q W ++ RS ++ +P
Sbjct: 347 LDEADHLLNQSFQNWSAELMNNIRSHKLDQ-------MPG-------------------- 379
Query: 263 PYPRLVKMVLSATLTQDPNKLAQLDLHHP-LFLTTGETRYKLPERLESYKL---ICESKL 318
++KMV SATLT + KL L L++P LF+ Y LP++L+ Y + +S
Sbjct: 380 ---NVIKMVFSATLTTNTEKLHGLHLYNPKLFVRDSVKLYNLPDKLQEYNINVPTAKSIY 436
Query: 319 KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQ--SVRSK 376
KPL+L+ LL L K +VF S E++ RL LL I I+ G SV S
Sbjct: 437 KPLFLLHLLDKLHNAKILVFVKSNEASLRLAPLLT------IMIERKMGTPHNVLSVNSN 490
Query: 377 TLKAFREGKI------------QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAG 424
KA + + QVL+++D M+RG+D+ + +V+NYD P + Y+HR G
Sbjct: 491 NSKAENKRLVHQFATSNTSESNQVLITTDLMSRGIDINDITDVINYDPPISSQQYVHRCG 550
Query: 425 RTARAGQLGRCFTLL 439
RTARA G LL
Sbjct: 551 RTARAQGHGNAHNLL 565
>gi|417401266|gb|JAA47524.1| Putative atp-dependent rna helicase [Desmodus rotundus]
Length = 455
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 127/429 (29%), Positives = 206/429 (48%), Gaps = 77/429 (17%)
Query: 33 PCLDPRLKVALQNMGISSLF-----------PVQVAVWQETIGPGLFERDLCINSPTGSG 81
P L+ +++G++ + P ++ + E I L RD+ + TGSG
Sbjct: 16 PALEEEEAKTFKDLGVTDVLCEACDQLGWTKPTKIQI--EAIPLALQGRDIIGLAETGSG 73
Query: 82 KTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSI 141
KT ++ALPI+ L R L ALV+ PTR+LA Q+ + F A+ ++G+ + VG
Sbjct: 74 KTGAFALPILNALLETPQR-LFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDS 132
Query: 142 ADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYL 201
+ L K+P I++ATPGRL+DH+ T+GF L L YL
Sbjct: 133 MSQSLALAKKPH---------------------IVIATPGRLIDHLENTKGFNLRALKYL 171
Query: 202 VVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKD 261
V+DE DR+L ++ + +L++ D + TFL
Sbjct: 172 VMDEADRILNMDFETEVDKILKVIPRDRK-------TFL--------------------- 203
Query: 262 KPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPL 321
SAT+T+ KL + L +P+ ++Y+ E+L+ Y + SK K
Sbjct: 204 ----------FSATMTKKVQKLQRAALKNPVKCAVS-SKYQTVEKLQQYYIFIPSKFKDT 252
Query: 322 YLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 381
YLV +L L ++F S+ +T R LL + G I + G QS R +L F
Sbjct: 253 YLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPL---HGQMNQSKRLGSLNKF 309
Query: 382 REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK 441
+ +L+++D +RG+D+ V+ VVN+D P + K YIHR GRTARAG+ G+ T + +
Sbjct: 310 KAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQ 369
Query: 442 DEVKRFKKL 450
+V+ F+++
Sbjct: 370 YDVELFQRI 378
>gi|45200872|ref|NP_986442.1| AGL225Cp [Ashbya gossypii ATCC 10895]
gi|74692158|sp|Q751D1.1|DBP6_ASHGO RecName: Full=ATP-dependent RNA helicase DBP6
gi|44985570|gb|AAS54266.1| AGL225Cp [Ashbya gossypii ATCC 10895]
gi|374109687|gb|AEY98592.1| FAGL225Cp [Ashbya gossypii FDAG1]
Length = 607
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 130/413 (31%), Positives = 207/413 (50%), Gaps = 76/413 (18%)
Query: 52 FPVQVAVWQE---------TIGPGLFER---DLCINSPTGSGKTLSYALPIVQTLSNRAV 99
FP+Q A+ ++ + R D+ +N+ TGSGKTL+YA+ ++ LS R V
Sbjct: 185 FPIQTALLDSVLPLMSQAYSVSKRYYTRKVGDILVNASTGSGKTLAYAMLLIHILSRRTV 244
Query: 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 159
LRA++++PT+ L QV D A+A + V ++ +S+ +E ++L +
Sbjct: 245 NKLRAVILVPTKLLVHQVYDTVQALAKGSSVVVAVSKMDTSLKEESAKLKAQ-------- 296
Query: 160 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 219
+P D+L+ TPGRL+DH+N + F+L++L +LV+DE DRLL +++Q W
Sbjct: 297 -EP-----------DVLIITPGRLVDHLN-MQTFSLKNLKFLVLDEADRLLNQSFQNWC- 342
Query: 220 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 279
++ + R ER FK ++KM+ SATLT +
Sbjct: 343 ---------------------------IELMTRLNAERPFKGP--GNVIKMIFSATLTTN 373
Query: 280 PNKLAQLDLHHPLFLTTGETRYKLPERLESYKL---ICESKLKPLYLVALLQSLGEE--K 334
+L L LH+P G Y +P +L+ Y L +S KPL L+ LL L E +
Sbjct: 374 TERLHDLQLHNPKLFLMGSQLYHMPAQLQEYNLPIPTSKSYAKPLILLRLLPLLSTESLR 433
Query: 335 CIVFTSSVESTHRLCTLL-----NHFGELRIKIKEYSGLQRQSVRSKTLKAF---REGKI 386
+VF S E++ RL LL N + + + ++ K ++AF G
Sbjct: 434 ILVFVKSNEASIRLAALLTAMVGNGLSAVSTTVGSINNNNSKATNRKLIEAFAAGASGHC 493
Query: 387 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439
+LVS+D M+RG+D+ G+++V+NYD P + Y+HR GRTARA G LL
Sbjct: 494 SILVSTDLMSRGLDISGISHVINYDLPISSQQYVHRCGRTARANTSGTAVNLL 546
>gi|296210930|ref|XP_002752172.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Callithrix jacchus]
Length = 455
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 124/398 (31%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 47 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 103
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 104 LAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH------------------- 144
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 145 --IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 200
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
TFL SAT+T+ KL + L +P+
Sbjct: 201 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 224
Query: 293 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352
++Y+ E+L+ Y + SK K YLV +L L ++F S+ +T R LL
Sbjct: 225 KCAVS-SKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 283
Query: 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 412
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 284 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 340
Query: 413 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 341 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>gi|355564029|gb|EHH20529.1| Putative ATP-dependent RNA helicase DDX47 [Macaca mulatta]
gi|355785916|gb|EHH66099.1| Putative ATP-dependent RNA helicase DDX47 [Macaca fascicularis]
gi|380786753|gb|AFE65252.1| putative ATP-dependent RNA helicase DDX47 isoform 1 [Macaca
mulatta]
gi|383418889|gb|AFH32658.1| putative ATP-dependent RNA helicase DDX47 isoform 1 [Macaca
mulatta]
Length = 455
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 124/398 (31%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 47 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 103
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 104 LAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH------------------- 144
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 145 --IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 200
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
TFL SAT+T+ KL + L +P+
Sbjct: 201 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 224
Query: 293 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352
++Y+ E+L+ Y + SK K YLV +L L ++F S+ +T R LL
Sbjct: 225 KCAVS-SKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 283
Query: 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 412
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 284 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 340
Query: 413 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 341 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>gi|326911793|ref|XP_003202240.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like
[Meleagris gallopavo]
Length = 447
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 124/398 (31%), Positives = 198/398 (49%), Gaps = 66/398 (16%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ V E I L RD+ + TGSGKT ++ALPI+Q L + R L ALV+ PTR+
Sbjct: 42 PTKIQV--EAIPVALQGRDIIGLAETGSGKTGAFALPILQALLDAPQR-LFALVLTPTRE 98
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 99 LAFQISEQFEALGSSIGVHSAVIVGGIDSMSQSLALAKKPH------------------- 139
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
I++ATPGRL+DH+ T+GF L L +LV+DE DR+L ++ + +L++ D +
Sbjct: 140 --IIIATPGRLVDHLENTKGFNLRALKFLVMDEADRILNMDFETEVDKILKVIPRDRK-- 195
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
TFL SAT+T+ KL + L +P+
Sbjct: 196 -----TFL-------------------------------FSATMTKQVQKLQRAALKNPV 219
Query: 293 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352
++Y+ E+L+ Y + SK K YLV +L L +VF S+ +T R LL
Sbjct: 220 KCAV-SSKYQTVEKLQQYYIFIPSKFKDSYLVYILNELAGNSFMVFCSTCNNTQRTALLL 278
Query: 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 412
+ G I + G Q+ R +L F+ +L+++D +RG+D+ V+ V+N+D
Sbjct: 279 RNLGFTAIPLH---GQMSQNKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVINFDI 335
Query: 413 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 336 PTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRI 373
>gi|402885238|ref|XP_003906071.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Papio anubis]
Length = 455
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 124/398 (31%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 47 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 103
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 104 LAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH------------------- 144
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 145 --IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 200
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
TFL SAT+T+ KL + L +P+
Sbjct: 201 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 224
Query: 293 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352
++Y+ E+L+ Y + SK K YLV +L L ++F S+ +T R LL
Sbjct: 225 KCAVS-SKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 283
Query: 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 412
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 284 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 340
Query: 413 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 341 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>gi|426225486|ref|XP_004006897.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Ovis aries]
Length = 457
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 124/398 (31%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 49 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 105
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 106 LAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPH------------------- 146
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
+++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 147 --VVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 202
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
TFL SAT+T+ KL + L +P+
Sbjct: 203 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 226
Query: 293 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352
++Y+ E+L+ Y L SK K YLV +L L ++F S+ +T R LL
Sbjct: 227 KCAVS-SKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 285
Query: 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 412
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 286 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 342
Query: 413 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 343 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 380
>gi|109095724|ref|XP_001086352.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 3
[Macaca mulatta]
Length = 455
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 123/390 (31%), Positives = 192/390 (49%), Gaps = 64/390 (16%)
Query: 61 ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV 120
E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+LA Q+ +
Sbjct: 53 EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRELAFQISEQ 111
Query: 121 FAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180
F A+ ++G+ + VG + L K+P I++ATP
Sbjct: 112 FEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH---------------------IIIATP 150
Query: 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFL 240
GRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D + TFL
Sbjct: 151 GRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-------TFL 203
Query: 241 PSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR 300
SAT+T+ KL + L +P+ ++
Sbjct: 204 -------------------------------FSATMTKKVQKLQRAALKNPVKCAVS-SK 231
Query: 301 YKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRI 360
Y+ E+L+ Y + SK K YLV +L L ++F S+ +T R LL + G I
Sbjct: 232 YQTVEKLQQYYIFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAI 291
Query: 361 KIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYI 420
+ G QS R +L F+ +L+++D +RG+D+ V+ VVN+D P + K YI
Sbjct: 292 PL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYI 348
Query: 421 HRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
HR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 349 HRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>gi|20149629|ref|NP_057439.2| probable ATP-dependent RNA helicase DDX47 isoform 1 [Homo sapiens]
gi|52782792|sp|Q9H0S4.1|DDX47_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX47; AltName:
Full=DEAD box protein 47
gi|12052856|emb|CAB66601.1| hypothetical protein [Homo sapiens]
gi|45786091|gb|AAH68009.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Homo sapiens]
gi|117645464|emb|CAL38198.1| hypothetical protein [synthetic construct]
gi|119616683|gb|EAW96277.1| hCG2044052 [Homo sapiens]
gi|119616687|gb|EAW96281.1| hCG27698, isoform CRA_a [Homo sapiens]
gi|193785403|dbj|BAG54556.1| unnamed protein product [Homo sapiens]
Length = 455
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 124/398 (31%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 47 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 103
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 104 LAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH------------------- 144
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 145 --IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 200
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
TFL SAT+T+ KL + L +P+
Sbjct: 201 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 224
Query: 293 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352
++Y+ E+L+ Y + SK K YLV +L L ++F S+ +T R LL
Sbjct: 225 KCAVS-SKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 283
Query: 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 412
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 284 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 340
Query: 413 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 341 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>gi|39644716|gb|AAH09379.2| DDX47 protein, partial [Homo sapiens]
Length = 450
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 124/398 (31%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 42 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 98
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 99 LAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH------------------- 139
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 140 --IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 195
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
TFL SAT+T+ KL + L +P+
Sbjct: 196 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 219
Query: 293 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352
++Y+ E+L+ Y + SK K YLV +L L ++F S+ +T R LL
Sbjct: 220 KCAVS-SKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 278
Query: 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 412
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 279 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 335
Query: 413 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 336 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 373
>gi|350537559|ref|NP_001233477.1| probable ATP-dependent RNA helicase DDX47 [Pan troglodytes]
gi|343958142|dbj|BAK62926.1| apolipoprotein-L domain-containing protein 1 [Pan troglodytes]
gi|410264252|gb|JAA20092.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Pan troglodytes]
gi|410305384|gb|JAA31292.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Pan troglodytes]
gi|410329313|gb|JAA33603.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Pan troglodytes]
Length = 455
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 124/398 (31%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 47 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 103
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 104 LAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH------------------- 144
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 145 --IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 200
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
TFL SAT+T+ KL + L +P+
Sbjct: 201 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 224
Query: 293 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352
++Y+ E+L+ Y + SK K YLV +L L ++F S+ +T R LL
Sbjct: 225 KCAVS-SKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 283
Query: 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 412
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 284 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 340
Query: 413 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 341 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>gi|397474910|ref|XP_003808899.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Pan paniscus]
Length = 455
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 124/398 (31%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 47 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 103
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 104 LAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH------------------- 144
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 145 --IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 200
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
TFL SAT+T+ KL + L +P+
Sbjct: 201 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 224
Query: 293 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352
++Y+ E+L+ Y + SK K YLV +L L ++F S+ +T R LL
Sbjct: 225 KCAVS-SKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 283
Query: 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 412
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 284 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 340
Query: 413 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 341 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>gi|297691246|ref|XP_002823001.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Pongo abelii]
Length = 455
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 124/398 (31%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 47 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 103
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 104 LAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH------------------- 144
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 145 --IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 200
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
TFL SAT+T+ KL + L +P+
Sbjct: 201 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 224
Query: 293 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352
++Y+ E+L+ Y + SK K YLV +L L ++F S+ +T R LL
Sbjct: 225 KCAVS-SKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 283
Query: 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 412
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 284 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 340
Query: 413 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 341 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>gi|332232745|ref|XP_003265564.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Nomascus
leucogenys]
Length = 455
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 123/398 (30%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 47 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 103
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 104 LAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH------------------- 144
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
+++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 145 --VIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 200
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
TFL SAT+T+ KL + L +P+
Sbjct: 201 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 224
Query: 293 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352
++Y+ E+L+ Y + SK K YLV +L L ++F S+ +T R LL
Sbjct: 225 KCAVS-SKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 283
Query: 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 412
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 284 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 340
Query: 413 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 341 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>gi|186703621|emb|CAQ43234.1| ATP-dependent RNA helicase DBP6 [Zygosaccharomyces rouxii]
Length = 609
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 136/429 (31%), Positives = 209/429 (48%), Gaps = 75/429 (17%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIG----------PGLFER--DLCINSPTGSGK 82
L PRL +Q FP+Q + T+ L R D+ +N+ TGSGK
Sbjct: 173 LQPRLLANIQQYFSKDTFPIQTVLLDNTLSLLNFTLGVTKKNLTRRVGDILVNASTGSGK 232
Query: 83 TLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIA 142
TL+Y++PI++ LS R V LR LV++PT+ L QV D + +A GL + ++ ++S+
Sbjct: 233 TLAYSIPIIEALSKRTVNKLRVLVIVPTKLLIGQVFDTMSKLAQGTGLIISISKLENSLK 292
Query: 143 DEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLV 202
+E + + Y+P DIL+ TPGRL+DH+ T+++L LV
Sbjct: 293 EEHQKFMN---------YEP-----------DILIVTPGRLVDHLQIG-SITMKNLMMLV 331
Query: 203 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDK 262
+DE D LL +++Q W ST L + S K + G
Sbjct: 332 LDEADHLLNQSFQNW-------------------STELMNNIKSHKLDQMPG-------- 364
Query: 263 PYPRLVKMVLSATLTQDPNKLAQLDLHHP-LFLTTGETRYKLPERLESYKL---ICESKL 318
++KMV SATLT + KL L L++P LF+ Y LP++L+ Y + +S
Sbjct: 365 ---NVIKMVFSATLTTNTEKLHGLHLYNPKLFVRDSVKLYNLPDKLQEYNVNVPTAKSLY 421
Query: 319 KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRI----KIKEYSGLQRQSVR 374
KPL+L+ LL L K +VF S E++ RL LL E R+ + + +S
Sbjct: 422 KPLFLLHLLNRLQNAKALVFVKSNEASLRLAPLLAIMIEKRMGASHNVLSVNSNNTKSEN 481
Query: 375 SKTLKAFREGKI----QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG 430
+ + F Q+L+++D M+RG+D+ + +V+NYD P + Y+HR GRTARA
Sbjct: 482 KRLVHQFATSDTKESNQILITTDLMSRGIDINDITDVINYDPPISSQQYVHRCGRTARAL 541
Query: 431 QLGRCFTLL 439
G LL
Sbjct: 542 GRGNAHNLL 550
>gi|339243967|ref|XP_003377909.1| ATP-dependent rRNA helicase Rrp3 [Trichinella spiralis]
gi|316973226|gb|EFV56846.1| ATP-dependent rRNA helicase Rrp3 [Trichinella spiralis]
Length = 496
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 123/399 (30%), Positives = 199/399 (49%), Gaps = 68/399 (17%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P +V + E I L RD+ + TGSGKT ++ALPI+Q L R L ALV+ PTR+
Sbjct: 85 PTKVQI--EAIPLALQGRDVIGLAETGSGKTAAFALPILQALLEHPQR-LFALVLTPTRE 141
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA Q+ + F A+ +G+ V + VG + + L K+P
Sbjct: 142 LAYQIAEQFEALGACIGIKVAVIVGGVDMVTQALCLAKKPH------------------- 182
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
++VATPGRL+DH+ T+GF+L L YLV+DE DR+L +++ + +LQ+
Sbjct: 183 --VIVATPGRLVDHLENTKGFSLRSLKYLVMDEADRILDMDFESEVNKILQVI------- 233
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVL-SATLTQDPNKLAQLDLHHP 291
PR K L SAT+T+ KL + L P
Sbjct: 234 --------------------------------PRERKTYLFSATMTKKVTKLQRASLQDP 261
Query: 292 LFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTL 351
+ + ++Y+ ++L+ + + K K YLV +L + + CIVFTS+ ++ R L
Sbjct: 262 VKVEVS-SKYQTVDKLQQHYIFIPQKFKDCYLVYILNEMAGKSCIVFTSTCANSLRTALL 320
Query: 352 LNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD 411
L + G + + G Q+ R L F+ +L+++D +RG+D+ V+ V+N+D
Sbjct: 321 LRNLGFTAVPL---HGQMSQAKRLGALNKFKAKDRSILIATDVASRGLDIPHVDLVINFD 377
Query: 412 KPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
P + K YIHR GRTARAG+ G T + + +V+ ++++
Sbjct: 378 IPTHSKDYIHRVGRTARAGRAGISITFVTQYDVELYQRI 416
>gi|344266640|ref|XP_003405388.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Loxodonta
africana]
Length = 461
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 125/398 (31%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 53 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 109
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 110 LAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH------------------- 150
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 151 --IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 206
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
TFL SAT+T+ KL + L +P+
Sbjct: 207 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 230
Query: 293 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352
++Y+ E+L+ Y L SK K YLV +L L +VF S+ +T R LL
Sbjct: 231 KCAVS-SKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMVFCSTCNNTQRTALLL 289
Query: 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 412
+ G I + G Q+ R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 290 RNLGFTAIPL---HGQMSQTKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 346
Query: 413 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 347 PTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRI 384
>gi|291392610|ref|XP_002712705.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1
[Oryctolagus cuniculus]
Length = 455
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 124/398 (31%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 47 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 103
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 104 LAFQISEQFEALGSSIGVHCAVIVGGIDSMSQSLALAKKPH------------------- 144
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 145 --IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 200
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
TFL SAT+T+ KL + L +P+
Sbjct: 201 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 224
Query: 293 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352
++Y+ E+L+ Y + SK K YLV +L L ++F S+ +T R LL
Sbjct: 225 KCAV-SSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 283
Query: 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 412
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 284 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 340
Query: 413 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 341 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>gi|56119032|ref|NP_001007854.1| probable ATP-dependent RNA helicase DDX47 [Gallus gallus]
gi|53130308|emb|CAG31483.1| hypothetical protein RCJMB04_6o10 [Gallus gallus]
Length = 453
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 123/398 (30%), Positives = 198/398 (49%), Gaps = 66/398 (16%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ V E I L RD+ + TGSGKT ++ALPI+Q L + R L ALV+ PTR+
Sbjct: 48 PTKIQV--EAIPVALQGRDIIGLAETGSGKTGAFALPILQALLDAPQR-LFALVLTPTRE 104
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 105 LAFQISEQFEALGSSIGVHSAVIVGGIDSMSQSLALAKKPH------------------- 145
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
I++ATPGRL+DH+ T+GF L L +LV+DE DR+L ++ + +L++ D +
Sbjct: 146 --IIIATPGRLVDHLENTKGFNLRALKFLVMDEADRILNMDFETEVDKILKVIPRDRK-- 201
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
TFL SAT+T+ KL + L +P+
Sbjct: 202 -----TFL-------------------------------FSATMTKQVQKLQRAALKNPV 225
Query: 293 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352
++Y+ E+L+ Y + SK K YLV +L L ++F S+ +T R LL
Sbjct: 226 KCAV-SSKYQTVEKLQQYYIFIPSKFKDSYLVYILNELAGNSFMIFCSTCNNTQRTALLL 284
Query: 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 412
+ G I + G Q+ R +L F+ +L+++D +RG+D+ V+ V+N+D
Sbjct: 285 RNLGFTAIPL---HGQMSQNKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVINFDI 341
Query: 413 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 342 PTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRI 379
>gi|334348319|ref|XP_001371236.2| PREDICTED: probable ATP-dependent RNA helicase DDX47-like
[Monodelphis domestica]
Length = 459
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 123/398 (30%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E I L RD+ + TGSGKT ++ALPI+ L + R ALV+ PTR+
Sbjct: 48 PTKIQI--EAIPMALDGRDIIGLAETGSGKTGAFALPILNALLDTPQRFF-ALVLTPTRE 104
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 105 LAFQISEQFEALGSSIGVECAVIVGGIDSMSQSLALAKKPH------------------- 145
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
+++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L+L D +
Sbjct: 146 --VIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKLIPRDRK-- 201
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
TFL SAT+T+ KL + L +P+
Sbjct: 202 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 225
Query: 293 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352
++Y+ E+L+ Y L SK K YLV +L L +VF S+ +T R LL
Sbjct: 226 KCAVS-SKYQTVEKLQQYYLFIPSKFKDSYLVYILNELAGNSFMVFCSTCNNTQRTALLL 284
Query: 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 412
+ G I + G Q+ R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 285 RNLGFTAIPL---HGQMSQNKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 341
Query: 413 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
P + K YIHR GRTARAG+ G+ T + + +V+ ++++
Sbjct: 342 PTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELYQRI 379
>gi|449279156|gb|EMC86802.1| putative ATP-dependent RNA helicase DDX47, partial [Columba livia]
Length = 453
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 123/398 (30%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ V E I L RD+ + TGSGKT ++ALPI+Q L R L ALV+ PTR+
Sbjct: 49 PTKIQV--EAIPVALQGRDIIGLAETGSGKTGAFALPILQALLETPQR-LFALVLTPTRE 105
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 106 LAFQISEQFEALGSSIGVHTTVIVGGIDAMSQSLALAKKPH------------------- 146
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
+++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 147 --VIIATPGRLVDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 202
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
TFL SAT+T+ KL + L +P+
Sbjct: 203 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 226
Query: 293 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352
++Y+ E+L+ Y + SK K YLV +L L ++F S+ +T R LL
Sbjct: 227 KCAVS-SKYQTVEKLQQYYIFIPSKFKDSYLVHILNELAGNSFMIFCSTCNNTQRTALLL 285
Query: 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 412
+ G I + G Q+ R L F+ +L+++D +RG+D+ V+ V+N+D
Sbjct: 286 RNLGFTAIPL---HGQMSQNKRLGALNKFKAKARSILLATDVASRGLDIPHVDVVINFDI 342
Query: 413 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 343 PTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRI 380
>gi|16549139|dbj|BAB70762.1| unnamed protein product [Homo sapiens]
Length = 455
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 123/398 (30%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E + L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 47 PTKIQI--EAVPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 103
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 104 LAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH------------------- 144
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 145 --IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 200
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
TFL SAT+T+ KL + L +P+
Sbjct: 201 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 224
Query: 293 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352
++Y+ E+L+ Y + SK K YLV +L L ++F S+ +T R LL
Sbjct: 225 KCAVS-SKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 283
Query: 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 412
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 284 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 340
Query: 413 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 341 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>gi|432107717|gb|ELK32877.1| Putative ATP-dependent RNA helicase DDX47 [Myotis davidii]
Length = 455
Score = 181 bits (459), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 124/398 (31%), Positives = 195/398 (48%), Gaps = 66/398 (16%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ V E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 47 PTKIQV--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 103
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 104 LAFQISEQFEALGSSIGVQTAVIVGGIDSMSQSLALAKKPH------------------- 144
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
+++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 145 --VVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 200
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
TFL SAT+T+ KL + L P+
Sbjct: 201 -----TFL-------------------------------FSATMTKKVQKLQRAALKDPV 224
Query: 293 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352
++Y+ E+L+ Y + SK K YLV +L L ++F S+ +T R LL
Sbjct: 225 KCAVS-SKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 283
Query: 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 412
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 284 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 340
Query: 413 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 341 PTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRI 378
>gi|410963864|ref|XP_003988479.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Felis catus]
Length = 455
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 123/398 (30%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 47 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 103
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 104 LAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH------------------- 144
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
+++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 145 --VIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 200
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
TFL SAT+T+ KL + L +P+
Sbjct: 201 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 224
Query: 293 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352
++Y+ E+L+ Y + SK K YLV +L L ++F S+ +T R LL
Sbjct: 225 KCAVS-SKYQTVEKLQQYYVFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 283
Query: 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 412
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 284 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 340
Query: 413 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 341 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>gi|449017072|dbj|BAM80474.1| DEAD box protein [Cyanidioschyzon merolae strain 10D]
Length = 453
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 129/396 (32%), Positives = 192/396 (48%), Gaps = 56/396 (14%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117
+ +E I L +D+ + TGSGKT ++A+PI+Q L R ALV+ PTR+LA Q+
Sbjct: 45 IQREAIPAALAGKDIVGLAQTGSGKTAAFAIPILQFLLEDP-RPYFALVLSPTRELAFQI 103
Query: 118 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177
+ F A+ +G+ V VG + + L KRP ++V
Sbjct: 104 SEQFLALGSEIGVRVATLVGGMDMVGQAVTLAKRPH---------------------VVV 142
Query: 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ-LTRSDNENRFSDA 236
TPGR++DH+ AT+GFTL+H+ LV+DE DRLL ++ L +L + RSD + S
Sbjct: 143 GTPGRVVDHLTATKGFTLKHVRILVLDEADRLLNMDFEEELDQILAAVPRSDADP--SKG 200
Query: 237 STFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT 296
TF + + SAT+T KL + L +
Sbjct: 201 ETFARKTY--------------------------LFSATMTSQVAKLQRASLRSKETVRI 234
Query: 297 G-ETRYKLPERLESYKLICESKLKPLYLVALLQSL-GEEKCIVFTSSVESTHRLCTLLNH 354
+Y E L + L K K YL L + L CIVFT + S RL +L +
Sbjct: 235 EVSAKYSTVETLVQHYLFIPEKYKDCYLTYLFEELVARHSCIVFTDTQSSAQRLALMLRN 294
Query: 355 FGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA 414
G + I G Q R L F+ G+ +LV++D +RG+D+ V+ V+NYD P
Sbjct: 295 LGYGAVCIH---GGMSQPNRLGALNQFKSGEKHILVATDVASRGLDIPLVDFVINYDIPP 351
Query: 415 YIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
+ K YIHR GRTARAG+ GR +L+ + +V+ F+K+
Sbjct: 352 HGKDYIHRVGRTARAGRTGRAISLVSQYDVELFQKV 387
>gi|443726900|gb|ELU13896.1| hypothetical protein CAPTEDRAFT_175937 [Capitella teleta]
Length = 453
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 124/425 (29%), Positives = 209/425 (49%), Gaps = 73/425 (17%)
Query: 37 PRLKVALQNMGISSLF--PVQVAVWQ-------ETIGPGLFERDLCINSPTGSGKTLSYA 87
P V +++G++ + ++ W+ E+I L D+ + TGSGKT S+A
Sbjct: 23 PEETVTFKSLGVTDVLCEACEILGWKAPSKIQKESIPVALQGSDVIGLAETGSGKTGSFA 82
Query: 88 LPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISE 147
LP++QTL + R + LV+ PTR+LA Q+ + F A+ ++G+ + VG + +
Sbjct: 83 LPVLQTLLDNPQR-MYCLVLTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMMTQSMV 141
Query: 148 LIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 207
L K+P I++ATPGRL+DH+ T+GF L L YLV+DE D
Sbjct: 142 LAKKP---------------------HIIIATPGRLVDHLENTKGFNLRALKYLVMDEAD 180
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L ++ + +L++ + + T+L
Sbjct: 181 RILNMDFEQEVNKILKVIPKERK-------TYL--------------------------- 206
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
SAT+T KL + L +P+ + T+Y+ ++L+ +K K +YLV +L
Sbjct: 207 ----YSATMTSKVAKLQRACLKNPVKVEVS-TKYQTVDKLQQSYCFIPAKFKDVYLVYIL 261
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
L IVF S+ +T R+ +L + G I + G Q+ R L F+
Sbjct: 262 NELAGNSFIVFCSTCANTQRVALMLRNLGMTAIPL---HGQMNQTKRLGALNKFKSKSRS 318
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 447
+L+++D +RG+D+ VN VVN+D P + K YIHR GRTARAG+ G+ TL+ + +V+ +
Sbjct: 319 ILIATDVASRGLDIPHVNVVVNFDIPTHSKDYIHRVGRTARAGKSGKAITLVTQYDVELY 378
Query: 448 KKLLQ 452
+++ Q
Sbjct: 379 QRIEQ 383
>gi|395538707|ref|XP_003771316.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Sarcophilus harrisii]
Length = 460
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 123/398 (30%), Positives = 195/398 (48%), Gaps = 66/398 (16%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R ALV+ PTR+
Sbjct: 48 PTKIQI--EAIPMALEGRDIIGLAETGSGKTGAFALPILNALLETPQRFF-ALVLTPTRE 104
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 105 LAFQISEQFEALGSSIGVECAVIVGGIDSMSQSLALAKKP-------------------- 144
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
+++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L+L D +
Sbjct: 145 -HVIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKLIPRDRK-- 201
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
TFL SAT+T+ KL + L +P+
Sbjct: 202 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 225
Query: 293 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352
++Y+ E+L+ Y L SK K YLV +L L +VF S+ +T R LL
Sbjct: 226 KCAVS-SKYQTVEKLQQYYLFIPSKFKDSYLVYILNELAGNSFMVFCSTCNNTQRTALLL 284
Query: 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 412
+ G I + G Q+ R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 285 RNLGFTAIPL---HGQMSQNKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 341
Query: 413 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
P + K YIHR GRTARAG+ G+ T + + +V+ ++++
Sbjct: 342 PTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELYQRI 379
>gi|449481708|ref|XP_002195464.2| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Taeniopygia
guttata]
Length = 450
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 121/398 (30%), Positives = 197/398 (49%), Gaps = 66/398 (16%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E I L RD+ + TGSGKT ++ALPI+Q L R L ALV+ PTR+
Sbjct: 47 PTKIQI--EAIPVALQGRDVIGLAETGSGKTGAFALPILQALLETPQR-LFALVLTPTRE 103
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 104 LAFQISEQFEALGSSIGVQTTVIVGGIDTMSQSLALAKKPH------------------- 144
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
+++ATPGRL+DH+ T+GF L L +LV+DE DR+L ++ + +L++ D +
Sbjct: 145 --VIIATPGRLVDHLENTKGFNLRALKFLVMDEADRILNMDFETEVDKILKVIPRDRK-- 200
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
TFL SAT+T+ KL + L +P+
Sbjct: 201 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 224
Query: 293 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352
++Y+ E+L+ Y + SK K YLV +L L ++F S+ +T R LL
Sbjct: 225 KCAVS-SKYQTVEKLQQYYIFIPSKFKDSYLVYILNELAGNSFMIFCSTCNNTQRTALLL 283
Query: 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 412
+ G I + G Q+ R +L F+ +L+++D +RG+D+ V+ V+N+D
Sbjct: 284 RNLGFTAIPL---HGQMSQNKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVINFDI 340
Query: 413 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 341 PTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRI 378
>gi|308806291|ref|XP_003080457.1| DEAD (ISS) [Ostreococcus tauri]
gi|116058917|emb|CAL54624.1| DEAD (ISS) [Ostreococcus tauri]
Length = 419
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 135/424 (31%), Positives = 214/424 (50%), Gaps = 55/424 (12%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LD RL+ AL + ++ LFPVQ +V G FERDLC+++PTGSGKTL+Y LP++ L
Sbjct: 5 LDSRLEKALDELQLTQLFPVQRSVLSRAYA-GRFERDLCVSAPTGSGKTLAYMLPLIHIL 63
Query: 95 SNR-AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR-- 151
S R + L+VLP+ DLA QV V VG+ V + + ++ + S + R
Sbjct: 64 SKRTSTEKTLGLIVLPSSDLATQVCSVAGHFCAKVGVCVRVTGVRGTLPNCDSLRVSRRA 123
Query: 152 PK------LEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 205
PK ++A + + + S ILV TPG L+ H A +E + +LV+DE
Sbjct: 124 PKRRFIRRMQATASHSKSQ--RSVPSTPQILVTTPGGLVAHRAA-----IETIEFLVIDE 176
Query: 206 TDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYP 265
D++L++++Q +L T+ S + R S F+ ++
Sbjct: 177 ADKILQQSHQNFLATL----NSGLQRRREVDSVFV-------------------GERHSN 213
Query: 266 RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR-YK-----LPERLESYKLICESKLK 319
RL ++ SATL + DLH + R YK LP + + + E+ K
Sbjct: 214 RLQILLCSATLKKT-------DLHMIRIFAPDQVRIYKSQVADLPSCISEFVVFSEAGDK 266
Query: 320 PLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLK 379
L+++L++ K ++ +S L L+ G EYS + Q R+++L
Sbjct: 267 FAALLSILKACSSSKMVILCASATRARHLYDQLHQIGSF--TCFEYSSMASQQHRAQSLS 324
Query: 380 AFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439
AF++ + +LV++DA TRG+D+EGV+ VV++D+ + +TY+HRAGRT RAG G C T
Sbjct: 325 AFQKCRRGILVATDAATRGLDIEGVSIVVSFDQAEHFQTYLHRAGRTGRAGNRGICVTTC 384
Query: 440 HKDE 443
E
Sbjct: 385 STGE 388
>gi|117646246|emb|CAL38590.1| hypothetical protein [synthetic construct]
gi|208967637|dbj|BAG72464.1| apolipoprotein L domain containing 1 [synthetic construct]
Length = 455
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 123/398 (30%), Positives = 195/398 (48%), Gaps = 66/398 (16%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E I L RD+ + TG GKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 47 PTKIQI--EAIPLALQGRDIIGLAETGPGKTGAFALPILNALLETPQR-LFALVLTPTRE 103
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 104 LAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH------------------- 144
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 145 --IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 200
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
TFL SAT+T+ KL + L +P+
Sbjct: 201 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 224
Query: 293 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352
++Y+ E+L+ Y + SK K YLV +L L ++F S+ +T R LL
Sbjct: 225 KCAVS-SKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 283
Query: 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 412
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 284 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 340
Query: 413 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 341 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>gi|254572509|ref|XP_002493364.1| Essential protein involved in ribosome biogenesis [Komagataella
pastoris GS115]
gi|238033162|emb|CAY71185.1| Essential protein involved in ribosome biogenesis [Komagataella
pastoris GS115]
gi|328352620|emb|CCA39018.1| hypothetical protein PP7435_Chr3-0044 [Komagataella pastoris CBS
7435]
Length = 721
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 136/462 (29%), Positives = 204/462 (44%), Gaps = 75/462 (16%)
Query: 12 LPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQ-------ETIG 64
+ W+ P+ + P L LK LQ G F VQ++V Q +T
Sbjct: 206 IDWLAKPIYYTTRATLPFQKLNLPPSLLKNILQKFGYKEAFSVQISVIQALQHDIKQTRI 265
Query: 65 PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124
DL N+PTGSGKTL Y +PIVQ + R V ++ +++ PT+ L QV +
Sbjct: 266 SNSIPGDLLANAPTGSGKTLGYCVPIVQAILGRRVSSIKCIILAPTKPLVSQVYSTLNQL 325
Query: 125 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLM 184
L+V + + ++ +E L EL + DI+V+TPGRL+
Sbjct: 326 CTGTDLNV-MELRNDTVDNEKMRLTS----------------YELPNYPDIIVSTPGRLL 368
Query: 185 DHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAF 244
+H+NA R L L +LVVDE DR+L W +L+ +D + + L +
Sbjct: 369 EHLNANR-LKLHCLRFLVVDEADRILHSTSFDWCAPLLRKINNDRSTSYGKSGKSLSALN 427
Query: 245 GSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE------ 298
S+ + K+V SATLT D KL+ L L+ P L +
Sbjct: 428 LSVVPCQ-----------------KLVFSATLTTDAEKLSHLQLYRPRLLVVNDHGVESG 470
Query: 299 -----TRYKLPERLESYKLICESK-----LKPLYLVALLQS------LGE--------EK 334
Y+LP L+ L + KPL L LL +G+
Sbjct: 471 KDGSSELYQLPPSLDELSLTLSNTDGVEFFKPLILFKLLTEYVYRARMGDMNVSVPFKAN 530
Query: 335 CIVFTSSVESTHRLCTLLNHFGEL---RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVS 391
+VF S E++ R+ LL+ E ++++K + L R + F KI VLV+
Sbjct: 531 VLVFIRSNEASARMEKLLDLLAEAFRKKLRVKSVNSLLDPETRERRFHDFTRNKIDVLVA 590
Query: 392 SDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 433
+D M RGMD+ +N+V+NYD P + Y+HR GRTARA + G
Sbjct: 591 TDVMARGMDLPNINHVINYDLPGSTREYVHRVGRTARANKFG 632
>gi|159485610|ref|XP_001700837.1| hypothetical protein CHLREDRAFT_167836 [Chlamydomonas reinhardtii]
gi|158281336|gb|EDP07091.1| predicted protein, partial [Chlamydomonas reinhardtii]
Length = 321
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 111/277 (40%), Positives = 144/277 (51%), Gaps = 56/277 (20%)
Query: 198 LCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVER 257
LC VVDETDRLLR++YQ WLP VL + S L
Sbjct: 98 LCEAVVDETDRLLRQSYQEWLPRVLA--------QLSPQHAVLQQHL------------- 136
Query: 258 GFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESK 317
+V+SATLT+DP KL +L LHHP RY L
Sbjct: 137 -----------HIVVSATLTRDPAKLQRLALHHP--------RYPLALLALLADASAAG- 176
Query: 318 LKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKT 377
E IVFTSS+E TH+L +L+ G+L K+ EYS R+
Sbjct: 177 ---------------ESVIVFTSSLEMTHKLYLMLSAVGDLAGKVVEYSSHVPAKERASG 221
Query: 378 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFT 437
L+ FR+G +VLV+SDAMTRGMDV+ V V+NYD P Y KTY+HRAGRTARAG+ GR T
Sbjct: 222 LERFRKGDAKVLVASDAMTRGMDVDCVQAVINYDAPVYAKTYVHRAGRTARAGKSGRVVT 281
Query: 438 LLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRP 474
LL ++++ FK +++KADN+ +P+ +ES RP
Sbjct: 282 LLRDEDMRHFKAMIRKADNNFVRELKLPAERVESFRP 318
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 66/102 (64%), Gaps = 8/102 (7%)
Query: 35 LDPRL-KVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQT 93
+D RL V L+ + LFPVQ AVWQ + G DLC+ +PTGSGKTL+YALP+V
Sbjct: 1 MDQRLVPVLLKAFSFTELFPVQAAVWQHSAGGRSTAHDLCVAAPTGSGKTLAYALPVVNA 60
Query: 94 LSN-------RAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128
L++ R++ L+ALVVLPTRDLA QV DVF + AV
Sbjct: 61 LADTTSHKHSRSLGRLQALVVLPTRDLAAQVYDVFQPLCEAV 102
>gi|443922203|gb|ELU41680.1| ATP-dependent RNA helicase drs1 [Rhizoctonia solani AG-1 IA]
Length = 1126
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 131/443 (29%), Positives = 209/443 (47%), Gaps = 69/443 (15%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101
AL + G +S P+Q A TI L +D+ + TGSGKT ++ +PI++ L R+
Sbjct: 200 ALTSAGFNSPTPIQAA----TIPVALLGKDVVGGAVTGSGKTAAFIIPILERLLYRSRDA 255
Query: 102 -LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY 160
R LV++PTR+LA+Q V + + L VG S+ + + L RP
Sbjct: 256 HTRVLVLVPTRELAVQCHAVAEKLGTFTDVRCALIVGGLSLKAQEATLRTRP-------- 307
Query: 161 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 220
D++VATPGRL+DH+ +R F L+ L LV+DE DR+L + + L
Sbjct: 308 -------------DLVVATPGRLIDHLRNSRSFALDALDVLVLDEADRMLSDGFADELKE 354
Query: 221 VLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP 280
++Q S T R+ M+ SAT+T D
Sbjct: 355 IVQ----------------------SCPTGRQT----------------MLFSATMTDDV 376
Query: 281 NKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL--KPLYLVALLQSLGEEKCIVF 338
L +L L HP+ L ++ ++ + + K +P LVAL Q + I+F
Sbjct: 377 ETLIRLSLRHPVRLFVDPSKQTARGLVQEFVRVRAGKEAERPALLVALCQRTARKGVIIF 436
Query: 339 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRG 398
S + H+ + FG +K E G Q R L FR G+ L+++D +RG
Sbjct: 437 FRSKKLAHQFRVV---FGLCGLKALELHGNLTQEQRLNALTKFRSGEADYLLATDLASRG 493
Query: 399 MDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDS 458
+D+ G+ V+NYD P I+ Y+HR GRTARAG+ GR TL+ + + K K +++++ D
Sbjct: 494 LDIRGIETVINYDMPGQIEQYVHRVGRTARAGKKGRSITLVGEADRKMLKAAIKRSEADK 553
Query: 459 CPIHSIPSSLIESLRPVYKSVRG 481
+PS ++ S+ + ++G
Sbjct: 554 IRHRVVPSEVVASVVEKLEELKG 576
>gi|226288804|gb|EEH44316.1| ATP-dependent rRNA helicase RRP3 [Paracoccidioides brasiliensis
Pb18]
Length = 482
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 129/398 (32%), Positives = 188/398 (47%), Gaps = 67/398 (16%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101
A + +G + P+Q E I L RDL + TGSGKT ++ALPI+Q L ++ +
Sbjct: 70 ACEALGYKTPTPIQT----EAIPLALQGRDLIGLAETGSGKTAAFALPILQALMDKP-QS 124
Query: 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD 161
L LV+ PTR+LA Q+ + F A+ + + + VG + + L K+P
Sbjct: 125 LFGLVLAPTRELAYQISEAFEALGSLISVRCAVIVGGMDMVPQAIALGKKPH-------- 176
Query: 162 PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 221
I+VATPGRL+DH+ T+GF+L +L YLV+DE DRLL + L +
Sbjct: 177 -------------IIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPILDKI 223
Query: 222 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 281
L++ LP RR + SAT++
Sbjct: 224 LKV---------------LPRE-------RRT----------------YLFSATMSSKVE 245
Query: 282 KLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 341
L + L +PL ++ ++Y+ L L K K +YLV LL + I+FT +
Sbjct: 246 SLQRASLSNPLRVSISSSKYQTVSTLLQTFLFIPHKYKDIYLVYLLNEFAGQSAIIFTRT 305
Query: 342 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 401
V T RL LL G I + G QS R L FR +LV++D RG+D+
Sbjct: 306 VNETQRLAILLRALGFGAIPLH---GQLSQSYRLGALGKFRSRSRDILVATDVAARGLDI 362
Query: 402 EGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439
V+ V+N+D P KTYIHR GRTARAG+ G F+ +
Sbjct: 363 PSVDVVLNFDLPPDSKTYIHRVGRTARAGKSGHAFSFV 400
>gi|91088115|ref|XP_969791.1| PREDICTED: similar to GA21647-PA [Tribolium castaneum]
gi|270012107|gb|EFA08555.1| hypothetical protein TcasGA2_TC006210 [Tribolium castaneum]
Length = 451
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 117/395 (29%), Positives = 194/395 (49%), Gaps = 64/395 (16%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117
+ +E I L +D+ + TGSGKT ++ALPI+Q+L R AL++ PTR+LA Q+
Sbjct: 45 IQKEAIPVALQGKDVIGLAETGSGKTAAFALPILQSLLENPQRYF-ALILTPTRELAFQI 103
Query: 118 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177
+ A+ +G+ + VG + + L K+P IL+
Sbjct: 104 SEQIEALGANIGVKCAVIVGGMDMMSQALILAKKPH---------------------ILI 142
Query: 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 237
ATPGRL+DH+ T+GF L+ L YLV+DE DR+L ++ + +L++ +
Sbjct: 143 ATPGRLLDHLENTKGFNLKALKYLVMDEADRILNMDFEVEVDKILKVIPRERH------- 195
Query: 238 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 297
TFL SAT+T+ KL + L P+ +
Sbjct: 196 TFL-------------------------------FSATMTKKVKKLQRACLRDPVKVEVS 224
Query: 298 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 357
T+Y+ E+L+ Y + K K +YLV +L + ++F S+ +T R LL + G
Sbjct: 225 -TKYQTVEKLQQYYIFIPVKFKDVYLVHILNEMAGNSFMIFCSTCNNTIRTALLLRNLGL 283
Query: 358 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417
+ + G Q+ R L F+ +L+S+D +RG+D+ V+ V+N+D P + K
Sbjct: 284 TAVPL---HGQMSQNKRLAALTKFKAKNRSILISTDVASRGLDIPHVDVVINFDIPTHSK 340
Query: 418 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 452
YIHR GRTARAG+ G+ T + + +V+ ++++ Q
Sbjct: 341 DYIHRVGRTARAGRSGKAITFVTQYDVELYQRIEQ 375
>gi|66472376|ref|NP_001018522.1| probable ATP-dependent RNA helicase DDX47 [Danio rerio]
gi|63102032|gb|AAH95776.1| Zgc:112350 [Danio rerio]
Length = 512
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 119/398 (29%), Positives = 198/398 (49%), Gaps = 66/398 (16%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E I L RD+ + TGSGKT ++A+P++Q+L A R L LV+ PTR+
Sbjct: 102 PTKIQI--EAIPVALQGRDVIGLAETGSGKTGAFAVPVLQSLLACAQR-LHTLVLTPTRE 158
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA Q+ + F A+ ++G+ + VG + + L K+P
Sbjct: 159 LAFQIAEQFDALGSSIGVKTAVIVGGIDMMSQALVLAKKPH------------------- 199
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
+++ATPGRL+DH+ T+GF L L YLV+DE DR+L +++ + +L++ D
Sbjct: 200 --VVIATPGRLIDHMENTKGFNLRALKYLVMDEADRILNMDFESEVDKILKVIPRDRR-- 255
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
TFL SAT+T+ KL + L P+
Sbjct: 256 -----TFL-------------------------------FSATMTKKVQKLQRAALQDPV 279
Query: 293 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352
+ ++Y ++L+ + + SK K YLV++L L +VF + +T R+ LL
Sbjct: 280 KCSVS-SKYATVDKLQQFYIFIPSKYKDCYLVSILNELAGNSFMVFCGTCNNTQRVALLL 338
Query: 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 412
+ G I + G Q+ R L F+ VL+++D +RG+D+ V+ V+N+D
Sbjct: 339 RNLGITAIPLH---GQMSQNKRLGALNKFKSKSRSVLLATDVASRGLDIPHVDCVINFDI 395
Query: 413 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 396 PTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRI 433
>gi|225718584|gb|ACO15138.1| Probable ATP-dependent RNA helicase DDX47 [Caligus clemensi]
Length = 470
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 121/393 (30%), Positives = 200/393 (50%), Gaps = 62/393 (15%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117
+ +E I L RD+ + TGSGKT ++ALP++Q L + R L AL++ PTR+LA Q+
Sbjct: 56 IQKEAIPVALTGRDVIGLAETGSGKTGAFALPVLQALLEKPQR-LFALILTPTRELAYQI 114
Query: 118 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177
+ F + ++G+ G+ VG + + L K+P I+V
Sbjct: 115 SETFEKLGKSIGIKCGVLVGGMDMMSQALVLGKKPH---------------------IIV 153
Query: 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 237
ATPGRL+DH+ T+GF L L YL++DE DR+L ++ + +L
Sbjct: 154 ATPGRLIDHMENTKGFDLRSLKYLIMDEADRILNMDFEIEVDKIL--------------- 198
Query: 238 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 297
+ LP G R+ M+ SAT+T+ KL + L +P+ +
Sbjct: 199 SSLPRGEG-----RK----------------NMLFSATMTKKVAKLQRASLQNPVRVEVS 237
Query: 298 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 357
++Y+ ++L Y L K K +YLV ++ L I+F+S+ T +L LL + G
Sbjct: 238 -SKYQTVDKLLQYYLFIPLKYKEMYLVHIINELAGNSFIIFSSTCSGTLKLALLLRNLGF 296
Query: 358 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417
I + +G Q+ R +L F+ +L+++D +RG+D+ V+ V+NYD P + K
Sbjct: 297 TAIPL---NGQMSQNKRLASLNKFKTKSRSILIATDVASRGLDIPHVDIVINYDIPTHSK 353
Query: 418 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
YIHR GRTARAG+ GR T + + +V+ ++++
Sbjct: 354 DYIHRVGRTARAGRSGRAITFVCQYDVELYQRI 386
>gi|332375408|gb|AEE62845.1| unknown [Dendroctonus ponderosae]
Length = 469
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 118/393 (30%), Positives = 195/393 (49%), Gaps = 64/393 (16%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117
+ +E+I L +D+ + TGSGKT ++ALPI+Q L R AL++ PTR+LA Q+
Sbjct: 65 IQRESIPVALQGKDIIGLAETGSGKTAAFALPILQALLENPQRHF-ALILTPTRELAFQI 123
Query: 118 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177
+ F A+ +G+ + VG + + L K+P I++
Sbjct: 124 SEQFEALGSGIGVKSIVIVGGLDMTSQALMLAKKPH---------------------III 162
Query: 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 237
ATPGRL+DH++ T+GF L L +LV+DE DR+L ++A + +L++ +
Sbjct: 163 ATPGRLVDHLSNTKGFNLRALKFLVMDEADRILNMDFEAEVDKILKVIPRERR------- 215
Query: 238 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 297
TFL SAT+T+ NKL + L P+ +
Sbjct: 216 TFL-------------------------------FSATMTKKVNKLQRACLQDPVRVEVS 244
Query: 298 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 357
T+Y+ E+L Y + +K K +YLV +L +VF S+ +T R LL + G
Sbjct: 245 -TKYQTVEKLLQYYVFIPAKFKDVYLVHILNENAGNSFMVFCSTCNNTIRTALLLRNLGF 303
Query: 358 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417
+ + G Q+ R L F+ +L+S+D +RG+D+ V+ V+N+D P + K
Sbjct: 304 TAVPLH---GQMSQNKRLAALTKFKAKNRSILISTDVASRGLDIPHVDIVINFDIPMHSK 360
Query: 418 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
YIHR GRTARAG+ G+ T + + +V+ ++++
Sbjct: 361 DYIHRVGRTARAGRSGKAITFVTQYDVELYQRI 393
>gi|171691382|ref|XP_001910616.1| hypothetical protein [Podospora anserina S mat+]
gi|170945639|emb|CAP71752.1| unnamed protein product [Podospora anserina S mat+]
Length = 490
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 126/384 (32%), Positives = 181/384 (47%), Gaps = 63/384 (16%)
Query: 56 VAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115
A+ QE I L +RD+ + TGSGKT ++ALPI+Q L ++ + L ALV+ PTR+LA
Sbjct: 86 TAIQQEAIPLALQDRDIIGIAETGSGKTAAFALPILQALLDKP-QPLFALVLAPTRELAA 144
Query: 116 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDI 175
Q+ F A+ + L L +G + + L K+P +
Sbjct: 145 QIAQSFEALGSLINLRCALLLGGLDMVQQAIALGKKPH---------------------V 183
Query: 176 LVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSD 235
+VATPGRL+DH+ T+GF+L +L Y V+DE DRLL + L +L+
Sbjct: 184 VVATPGRLLDHLEKTKGFSLRNLRYCVMDEADRLLDMDFGPILEKILK------------ 231
Query: 236 ASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLT 295
FLP RR + SAT++ L + L PL +
Sbjct: 232 ---FLPRE-------RRT----------------FLFSATMSSKVESLQRASLRDPLKVN 265
Query: 296 TGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHF 355
++Y+ L S L K Y + L + IVFT +V T R+ LL
Sbjct: 266 VSTSKYQTVSTLVSNYLFIPHIHKDTYFIYLCNEFAGKTMIVFTRTVLETQRIAILLRTL 325
Query: 356 GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAY 415
G I + + GL QS R L FR G +LV++D RG+D+ V+ V+NYD P
Sbjct: 326 GMGAIPL--HGGLS-QSARLGALSKFRAGTRNILVATDVAARGLDIPNVDCVINYDLPQD 382
Query: 416 IKTYIHRAGRTARAGQLGRCFTLL 439
KTYIHR GRTARAG+ G +++
Sbjct: 383 SKTYIHRVGRTARAGKSGHALSIV 406
>gi|429852313|gb|ELA27456.1| ATP-dependent rRNA helicase rrp3 [Colletotrichum gloeosporioides
Nara gc5]
Length = 476
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 125/398 (31%), Positives = 188/398 (47%), Gaps = 67/398 (16%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101
A +G ++ P+Q ++I L RD+ + TGSGKT ++ALPI+Q L ++
Sbjct: 67 ACDRLGYTNPTPIQA----QSIPHALQNRDVIGLAETGSGKTAAFALPIIQALLDKPSH- 121
Query: 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD 161
L LV+ PTR+LA Q+ F A+ V L V + VG + + L K+P
Sbjct: 122 LFGLVLAPTRELAAQIAASFEALGSLVNLRVAVIVGGLDMVAQAIALGKKPH-------- 173
Query: 162 PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 221
I+VATPGRL+DH+ T+GF+L L YLV+DE DRLL + + +
Sbjct: 174 -------------IVVATPGRLVDHLEKTKGFSLRSLKYLVMDEADRLLDMDFGPSIDKI 220
Query: 222 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 281
L+ F+P RR + SAT++
Sbjct: 221 LK---------------FIPRE-------RRT----------------FLFSATMSSKIE 242
Query: 282 KLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 341
L + L P+ ++ + ++ L + C K YLV L+ +K ++FT +
Sbjct: 243 SLQRASLRDPVRISISSSSHQTVSTLIQNYIFCPHNKKDTYLVYLVNEYSGKKIVLFTRT 302
Query: 342 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 401
V T RL LL G I I G Q+ R L FR G +LV++D RG+D+
Sbjct: 303 VTETQRLAILLRTLGFGAIPIH---GQLNQTARLGALNKFRAGSRDILVATDVAARGLDI 359
Query: 402 EGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439
V+ V+N+D P+ KTY+HR GRTARAG+ G+ T++
Sbjct: 360 PLVDVVINFDIPSDSKTYVHRVGRTARAGKSGKAITIM 397
>gi|307104244|gb|EFN52499.1| hypothetical protein CHLNCDRAFT_138879 [Chlorella variabilis]
Length = 576
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 101/198 (51%), Positives = 124/198 (62%), Gaps = 20/198 (10%)
Query: 7 KSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPG 66
K+ PVLPWMR P+ + E L+ + LDPRL+ AL+ GI LFPVQ W+ET G
Sbjct: 117 KAAPVLPWMRVPIAIEASEGTLLEEVQGLDPRLRRALEGTGIEVLFPVQTVAWRETAGGA 176
Query: 67 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126
D+CI +PTGSGKTLSYALP++Q LS RAV LRALVVLPTRDLA+QV V A + P
Sbjct: 177 SPAHDICICAPTGSGKTLSYALPVLQALSGRAVPRLRALVVLPTRDLAVQVFGVLAGLCP 236
Query: 127 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDH 186
A+GL+ LA G++S+A E L VDILVATPGRL+ H
Sbjct: 237 ALGLAACLAAGKASLAAEAQLLAS--------------------GGVDILVATPGRLIAH 276
Query: 187 INATRGFTLEHLCYLVVD 204
+ T GFTL HL +LV+D
Sbjct: 277 LEGTPGFTLRHLRFLVID 294
Score = 174 bits (442), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 98/191 (51%), Positives = 127/191 (66%), Gaps = 2/191 (1%)
Query: 285 QLDLHHPLFLTTG--ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSV 342
+L LH P ++ + RY+LP L+ KL+ ++ KP L ALLQ L E+ IVFTSSV
Sbjct: 295 RLGLHCPRYIAMSAVDHRYQLPRSLQELKLVVPAERKPAALAALLQELRGEQTIVFTSSV 354
Query: 343 ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE 402
E+THRL LL L + E+S L + R+ L+AFR GK +VLV SDAMTRGMDV
Sbjct: 355 EATHRLHLLLAALPCLPDRAVEFSSLVAPAERAARLEAFRSGKAKVLVCSDAMTRGMDVA 414
Query: 403 GVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIH 462
GV NVVNYD P Y+KTY+HRAGRTARAG+ GR FTLL ++V+ FK +L+KADN H
Sbjct: 415 GVANVVNYDAPVYVKTYVHRAGRTARAGRAGRVFTLLRHEDVRHFKGMLRKADNTFVRAH 474
Query: 463 SIPSSLIESLR 473
+ +E++R
Sbjct: 475 RLAKGALEAVR 485
>gi|336471127|gb|EGO59288.1| ATP-dependent rRNA helicase rrp-3 [Neurospora tetrasperma FGSC
2508]
gi|350292214|gb|EGZ73409.1| ATP-dependent rRNA helicase rrp-3 [Neurospora tetrasperma FGSC
2509]
Length = 515
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 125/398 (31%), Positives = 188/398 (47%), Gaps = 67/398 (16%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101
A + +G + P+Q +++I L RD+ + TGSGKT ++ALPI+Q L ++
Sbjct: 104 ACERLGYKNPTPIQ----EQSIPLALQNRDIIGIAETGSGKTAAFALPILQALLDKPA-P 158
Query: 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD 161
L ALV+ PTR+LA Q+ F A+ + L L +G + + L K+P
Sbjct: 159 LFALVLAPTRELAAQIAQAFEALGSLISLRCALILGGMDMVTQAIALGKKPH-------- 210
Query: 162 PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 221
++VATPGRL+DH+ T+GF+L + YLV+DE DRLL + L +
Sbjct: 211 -------------VIVATPGRLLDHLEKTKGFSLRSMQYLVMDEADRLLDMDFGPILEKI 257
Query: 222 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 281
L+ FLP RR + SAT++
Sbjct: 258 LK---------------FLPRE-------RRT----------------FLFSATMSSKVE 279
Query: 282 KLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 341
L + L PL ++ +Y L+S + K YLV L + I+FT +
Sbjct: 280 SLQRASLRDPLKVSVSSNKYATVSTLKSNYVFIPHMHKDTYLVYLCNEFAGQTIIIFTRT 339
Query: 342 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 401
V T R+ LL G I + + GL QS R L FR G ++LV++D RG+D+
Sbjct: 340 VLETQRIAILLRTLGMGAIPL--HGGLS-QSARLGALNKFRAGSREILVATDVAARGLDI 396
Query: 402 EGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439
V+ V+N+D P KTY+HR GRTARAG+ G +++
Sbjct: 397 PNVDCVINHDLPQDSKTYVHRVGRTARAGKSGHAISIV 434
>gi|85082449|ref|XP_956915.1| ATP-dependent rRNA helicase RRP3 [Neurospora crassa OR74A]
gi|74662479|sp|Q7RY59.1|RRP3_NEUCR RecName: Full=ATP-dependent rRNA helicase rrp-3
gi|28917996|gb|EAA27679.1| ATP-dependent rRNA helicase RRP3 [Neurospora crassa OR74A]
Length = 515
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 125/398 (31%), Positives = 188/398 (47%), Gaps = 67/398 (16%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101
A + +G + P+Q +++I L RD+ + TGSGKT ++ALPI+Q L ++
Sbjct: 104 ACERLGYKNPTPIQ----EQSIPLALQNRDIIGIAETGSGKTAAFALPILQALLDKPA-P 158
Query: 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD 161
L ALV+ PTR+LA Q+ F A+ + L L +G + + L K+P
Sbjct: 159 LFALVLAPTRELAAQIAQAFEALGSLISLRCALILGGMDMVTQAIALGKKPH-------- 210
Query: 162 PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 221
++VATPGRL+DH+ T+GF+L + YLV+DE DRLL + L +
Sbjct: 211 -------------VIVATPGRLLDHLEKTKGFSLRSMQYLVMDEADRLLDMDFGPILEKI 257
Query: 222 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 281
L+ FLP RR + SAT++
Sbjct: 258 LK---------------FLPRE-------RRT----------------FLFSATMSSKVE 279
Query: 282 KLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 341
L + L PL ++ +Y L+S + K YLV L + I+FT +
Sbjct: 280 SLQRASLRDPLKVSVSSNKYATVSTLKSNYVFIPHMHKDTYLVYLCNEFAGQTIIIFTRT 339
Query: 342 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 401
V T R+ LL G I + + GL QS R L FR G ++LV++D RG+D+
Sbjct: 340 VLETQRIAILLRTLGMGAIPL--HGGLS-QSARLGALNKFRAGSREILVATDVAARGLDI 396
Query: 402 EGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439
V+ V+N+D P KTY+HR GRTARAG+ G +++
Sbjct: 397 PNVDCVINHDLPQDSKTYVHRVGRTARAGKSGHAISIV 434
>gi|156548270|ref|XP_001601432.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like [Nasonia
vitripennis]
Length = 460
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 116/395 (29%), Positives = 196/395 (49%), Gaps = 64/395 (16%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117
+ +E I + +D+ + TGSGKT ++ALPI+Q L R AL++ PTR+LA Q+
Sbjct: 50 IQREAIPLTIQGKDVIGLAETGSGKTAAFALPILQALLENPQRYF-ALILTPTRELAFQI 108
Query: 118 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177
+ F A+ ++G+ + VG + + L K+P I++
Sbjct: 109 SEQFEALGASIGVKCVVIVGGMDMMTQSLMLAKKPH---------------------III 147
Query: 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 237
ATPGRL+DH+ T+GF L L +LV+DE DR+L ++ + +L++
Sbjct: 148 ATPGRLVDHLENTKGFNLRSLKFLVMDEADRILNMDFEVEVDKILRV------------- 194
Query: 238 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 297
+P RR ++ SAT+T+ KL + L +P+ +
Sbjct: 195 --IPRE-------RRT----------------LLFSATMTKKVQKLQRASLQNPVKVEVS 229
Query: 298 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 357
T+Y+ E+L+ Y + K K +YLV +L L ++F S+ +T R LL G
Sbjct: 230 -TKYQTVEKLQQYYVFIPVKFKDVYLVHILNELSGNSFMIFCSTCNNTMRTALLLRSLGF 288
Query: 358 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417
+ + + G Q+ R L F+ +L+S+D +RG+D+ V+ V+N+D P + K
Sbjct: 289 MAVPL---HGQMSQNKRIAALTKFKAKNRSILISTDVASRGLDIPHVDVVINFDIPTHSK 345
Query: 418 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 452
YIHR GRTARAG+ G T + + +V+ ++++ Q
Sbjct: 346 DYIHRVGRTARAGRSGISVTFVTQYDVELYQRIEQ 380
>gi|340960548|gb|EGS21729.1| ATP-dependent rRNA helicase rrp3-like protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 492
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 125/398 (31%), Positives = 188/398 (47%), Gaps = 67/398 (16%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101
A + +G P+Q ++ I L RDL + TGSGKT ++ALPI+Q L ++ +
Sbjct: 84 ACERLGYKRPTPIQ----EQAIPLALQNRDLIGIAETGSGKTAAFALPILQALLDKP-QP 138
Query: 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD 161
L ALV+ PTR+LA Q+ F A+ + L L +G + + L K+P
Sbjct: 139 LFALVLAPTRELAAQIAQAFEALGSMISLRCALILGGLDMVQQAIALGKKPH-------- 190
Query: 162 PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 221
++VATPGRL+DH+ T+GF+L +L YLV+DE DRLL + L +
Sbjct: 191 -------------VIVATPGRLLDHLEKTKGFSLRNLKYLVMDEADRLLDMDFGPILEKI 237
Query: 222 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 281
L+ FLP RR + SAT++
Sbjct: 238 LK---------------FLPRE-------RRT----------------FLFSATMSSKVE 259
Query: 282 KLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 341
L + L PL ++ ++Y+ L + + K YL+ L+ + I+FT +
Sbjct: 260 SLQRASLRDPLKVSISTSKYQTVSTLVQHYIFIPHIHKDTYLIYLVNEFAGKTIIIFTRT 319
Query: 342 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 401
V T R+ LL G I + + GL QS R L FR G +LV++D RG+D+
Sbjct: 320 VLETQRIAILLRTLGMGAIPL--HGGLS-QSARLGALNKFRAGSRNILVATDVAARGLDI 376
Query: 402 EGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439
V+ V+N+D P KTY+HR GRTARAG+ G + +
Sbjct: 377 PNVDCVLNFDLPQDSKTYVHRVGRTARAGKSGHAISFV 414
>gi|336372365|gb|EGO00704.1| hypothetical protein SERLA73DRAFT_105076 [Serpula lacrymans var.
lacrymans S7.3]
Length = 681
Score = 174 bits (441), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 132/453 (29%), Positives = 218/453 (48%), Gaps = 79/453 (17%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR---- 97
AL MG+ P+Q A + L +D+ + TGSGKT ++ +PI++ L R
Sbjct: 200 ALTTMGLHKPTPIQAAA----VPVALLGKDVVGGAVTGSGKTAAFTIPIIERLLYRDKGK 255
Query: 98 ---AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
A RCL VV+PTR+LA+Q +V +A + L VG S+ + + L RP
Sbjct: 256 NAAATRCL---VVVPTRELAVQCFEVGTRMAGHTDVRFCLVVGGLSLKSQEAALRSRP-- 310
Query: 155 EAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY 214
D+L+ATPGRL+DH++ + FTL+ L LV+DE DR+L
Sbjct: 311 -------------------DVLIATPGRLIDHLHNSPSFTLDALDILVLDEADRML---- 347
Query: 215 QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274
E+ F+D T + ++ C V R M+ SA
Sbjct: 348 ---------------EDGFADELT---------EIVKACPVSRQ----------TMLFSA 373
Query: 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLK--PLYLVALLQSLGE 332
T+T +KL +L L P+ + R ++ + + K K P L+ + + +
Sbjct: 374 TMTDSVDKLIRLSLTKPVRIFVDAKRSMAKGLVQEFVRVRPEKEKERPALLLCICKRTFK 433
Query: 333 EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS 392
+ IVF S + H++ + FG L +K E G Q R K L+AFR+G + L+++
Sbjct: 434 TRVIVFFRSKKLAHQMRIV---FGLLDMKCDELHGDLSQEQRLKALQAFRDGSVDYLMAT 490
Query: 393 DAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 452
D +RG+D++G+ V+N+D P+ + Y+HR GRTARAG+ GR T + + + K + +++
Sbjct: 491 DLASRGLDIKGIETVINFDMPSQLAQYLHRVGRTARAGKTGRSVTFVGEADRKMLRAVVK 550
Query: 453 -KADNDSCPIHSIPSSLIESLRPVYKSVRGGIS 484
A DS +P+ ++ ++ V+ +S
Sbjct: 551 HSAGEDSVRHRVVPADVVSKWAQKFEQVKEEVS 583
>gi|156362250|ref|XP_001625693.1| predicted protein [Nematostella vectensis]
gi|156212537|gb|EDO33593.1| predicted protein [Nematostella vectensis]
Length = 446
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 118/393 (30%), Positives = 191/393 (48%), Gaps = 64/393 (16%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117
+ +E I L +D+ + TGSGKT ++ALPI+Q L + R L AL++ PTR+LA Q+
Sbjct: 40 IQREAIPVALQGKDVIGLAETGSGKTGAFALPILQALLDNPQR-LFALILTPTRELAFQI 98
Query: 118 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177
+ A+ +G+ + VG + + L K+P I++
Sbjct: 99 SEQCEALGSGIGVKCAVIVGGIDMMSQALMLAKKPH---------------------III 137
Query: 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 237
ATPGRL+DH+ T+GF+L L YLV+DE DR+L ++ + +L++ +
Sbjct: 138 ATPGRLIDHLENTKGFSLRTLKYLVMDEADRILNMDFEKEVDKLLKVIPKERR------- 190
Query: 238 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 297
TFL SAT+T+ KL + L P+ +
Sbjct: 191 TFL-------------------------------FSATMTKKVQKLQRASLQAPVKVEVA 219
Query: 298 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 357
T+Y+ E+L+ L SK K YLV +L L +VF + + R+ +L + G
Sbjct: 220 -TKYQTVEKLQQSYLFIPSKFKDCYLVYVLNELAGNSFMVFCGTCNNVQRVTLMLRNLG- 277
Query: 358 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417
+ G QS R L F+ +LV++D +RG+D+ V+ V+N+D P + K
Sbjct: 278 --LDAVPLHGQMSQSKRLGALNKFKSKSRSILVATDVASRGLDIPHVDVVINFDIPTHSK 335
Query: 418 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
YIHR GRTARAG+ GR T + + +V+ ++++
Sbjct: 336 DYIHRVGRTARAGRSGRSVTFVTQYDVELYQRI 368
>gi|384487072|gb|EIE79252.1| hypothetical protein RO3G_03957 [Rhizopus delemar RA 99-880]
Length = 462
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 123/400 (30%), Positives = 190/400 (47%), Gaps = 68/400 (17%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117
+ +E+I + RD+ + TGSGKT ++A+PI+Q L + A V+ PTR+LA Q+
Sbjct: 49 IQKESIPWAIEGRDIIGLAQTGSGKTAAFAIPIIQRLWQNP-QAFFACVLAPTRELAYQI 107
Query: 118 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177
+ F ++ +G+ + VG + + L KRP I+V
Sbjct: 108 AETFESLGSVIGVRCAVIVGGMDMMTQSIALAKRPH---------------------IIV 146
Query: 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 237
TPGRL DH+ T+GF L+HL YLV+DE DRLL + + +L++ + +
Sbjct: 147 CTPGRLQDHLENTKGFNLKHLKYLVMDEADRLLDLDFGPKIDQILKVIPRER-------N 199
Query: 238 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 297
TFL SAT+T KL + LH P+ +
Sbjct: 200 TFL-------------------------------FSATMTTKVAKLQRASLHKPVKVEVA 228
Query: 298 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 357
T+Y + L Y L K K Y+V LL L I+FT + T ++ +L + G
Sbjct: 229 -TKYSTVKTLLQYYLFFPLKHKDCYMVYLLNELAGNSTIIFTRTCSDTQKIAIMLRNLGF 287
Query: 358 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417
I + G Q+ R L F+ G +LV++D +RG+D+ V+ V+NYD P K
Sbjct: 288 GAIPL---HGQLPQAKRLGALNKFKAGARNILVATDVASRGLDIPLVDVVINYDVPQSSK 344
Query: 418 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADND 457
YIHR GRTARAG+ G+ T + + +V +L+Q+ + D
Sbjct: 345 DYIHRVGRTARAGRSGKSVTFVTQYDV----ELIQRIEKD 380
>gi|409082704|gb|EKM83062.1| hypothetical protein AGABI1DRAFT_33446 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426200570|gb|EKV50494.1| hypothetical protein AGABI2DRAFT_64060 [Agaricus bisporus var.
bisporus H97]
Length = 453
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 124/401 (30%), Positives = 191/401 (47%), Gaps = 64/401 (15%)
Query: 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111
F + + E + L RD+ + TGSGKT ++ LPI+Q L + L A V+ PTR
Sbjct: 37 FKIPTEIQVEALPHALEGRDIIGVAATGSGKTAAFGLPILQKLWEEP-KGLFACVLAPTR 95
Query: 112 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 171
+LA Q+ ++ A+G + VG + + L KRP
Sbjct: 96 ELAYQISQQLESLGSAMGARCAVIVGGMDMPAQAIALAKRPH------------------ 137
Query: 172 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN 231
I+VATPGRLMDH+ T+GF L ++ +LV+DE DRLL + + +L+L +
Sbjct: 138 ---IVVATPGRLMDHLEKTKGFNLRNIKFLVLDEADRLLDLDFGTIIDKILKLIPKER-- 192
Query: 232 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 291
+T+L SAT+T KL + L +P
Sbjct: 193 -----TTYL-------------------------------FSATMTTKVAKLQRASLSNP 216
Query: 292 LFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTL 351
+ + T+Y+ L Y L+ K K YLV L +L + I+FT +V RL +
Sbjct: 217 VRVEV-STKYQTVSTLLQYYLLMPLKDKDAYLVYLANTLAQNSIIIFTRTVHDASRLSII 275
Query: 352 LNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD 411
L G + + G QS R L F+ G +VLV++D +RG+D+ V+ V+N+D
Sbjct: 276 LRTLGFPAVPLH---GQLSQSQRLGALGQFKSGGRRVLVATDVASRGLDIPSVDVVINFD 332
Query: 412 KPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 452
P + K YIHR GRTARAG+ G+ TL+ + +V+ +++ Q
Sbjct: 333 IPTHSKDYIHRVGRTARAGRAGKSITLVTQYDVELVQRIEQ 373
>gi|335308097|ref|XP_003361101.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like [Sus
scrofa]
Length = 473
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 121/378 (32%), Positives = 183/378 (48%), Gaps = 66/378 (17%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 100 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 156
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 157 LAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPH------------------- 197
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 198 --IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 253
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
TFL SAT+T+ KL + L +P+
Sbjct: 254 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 277
Query: 293 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352
++Y+ E+L+ Y L SK K YLV +L L ++F S+ +T R LL
Sbjct: 278 KCAV-SSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 336
Query: 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 412
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 337 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 393
Query: 413 PAYIKTYIHRAGRTARAG 430
P + K YIHR GRTARAG
Sbjct: 394 PTHSKDYIHRVGRTARAG 411
>gi|170046412|ref|XP_001850760.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
gi|167869183|gb|EDS32566.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
Length = 438
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 114/393 (29%), Positives = 196/393 (49%), Gaps = 64/393 (16%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117
+ +E I L +D+ + TGSGKT ++ALPI+Q L R A+++ PTR+LA Q+
Sbjct: 22 IQREAIPLALQGKDVIGLAETGSGKTGAFALPILQALLENPQRYF-AVILTPTRELAYQI 80
Query: 118 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177
+ F A+ ++G+ + VG + + +L ++P I++
Sbjct: 81 SEQFEALGASIGVKCCVIVGGMDMVSQALQLARKP---------------------HIII 119
Query: 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 237
ATPGRL+DH+ T+GF L+ + YLV+DE DR+L ++ L +L++ +
Sbjct: 120 ATPGRLVDHLENTKGFNLKAVKYLVMDEADRILNLDFEVELDKILKVLPRERR------- 172
Query: 238 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 297
TFL SAT+T+ KL + L P+ +
Sbjct: 173 TFL-------------------------------FSATMTKKVKKLERASLKDPVKVEVS 201
Query: 298 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 357
++Y+ E+L Y + +K K +YLV +L L ++F S+ +T R +L G
Sbjct: 202 -SKYQTVEKLLQYYVFIPAKFKDVYLVHILNELAGNSFMIFCSTCNNTVRTALMLRALGL 260
Query: 358 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417
+ + G Q+ R +L F+ Q+L+S+D +RG+D+ V+ V+N+D P + K
Sbjct: 261 AAVPL---HGQMSQNKRLASLNKFKGKDRQILISTDVASRGLDIPHVDVVLNFDIPTHSK 317
Query: 418 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
YIHR GRTARAG+ G+ T + + +V+ ++++
Sbjct: 318 DYIHRVGRTARAGRAGKAVTFVTQYDVELYQRI 350
>gi|398407893|ref|XP_003855412.1| hypothetical protein MYCGRDRAFT_68754 [Zymoseptoria tritici IPO323]
gi|339475296|gb|EGP90388.1| hypothetical protein MYCGRDRAFT_68754 [Zymoseptoria tritici IPO323]
Length = 736
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 145/464 (31%), Positives = 223/464 (48%), Gaps = 74/464 (15%)
Query: 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRC-LRALVVLPTRDLALQVKDVFAAIAPAVG 129
D+ +++ TGSGKT++Y LP+++ L A R L ALVV+PTR+L +QV V ++ G
Sbjct: 297 DVAVSAATGSGKTIAYLLPMIEALRRNATRGRLGALVVVPTRELVVQVAAVADSLCKGCG 356
Query: 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA 189
L VG+A G DE + ++ I + V SAVDILVATPGRL++HI++
Sbjct: 357 LKVGMATGTGKFKDEQDHAKEEQRMRDTIHGITQHVAT-YDSAVDILVATPGRLLEHISS 415
Query: 190 TRGFTLEHLCYLVVDETDRLLREAYQAWLPTV---LQLTRSDNENRFSDASTFLPSAFGS 246
T GF L +L +L++DE D+LL Y+ +L ++ L RS +E +
Sbjct: 416 TPGFNLVYLQWLIIDEADKLLDNQYEGFLDSLNAELARPRSIHEQDVRE----------- 464
Query: 247 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT---------- 296
+ +R G+ + D RL K+VLSAT+T+D +KL L L P +
Sbjct: 465 -QYLRSKGM---WDDVRERRLRKVVLSATMTRDISKLTSLRLRRPTMIAVRGSEGIDAQA 520
Query: 297 -----GETR----------YKLPERLESYKL-ICESKLKPLYLVALLQSLGEEKCI-VFT 339
G+ R ++LP L Y + + + KPL S + + +FT
Sbjct: 521 RPGARGDGRDDGFRENASGFELPRTLIEYCVPVGDGSEKPLVRHRKDSSQPQAPTVLIFT 580
Query: 340 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ---------VLV 390
+S ES +RL LL + R TL + GK + V+V
Sbjct: 581 ASNESVNRLSHLLKEIKPSWAR------------RITTLVKLKPGKARITAKADESAVVV 628
Query: 391 SSDAMTRGMDV---EGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 447
S+D RG+D + +V+ YD P + YIHR GRTARAG+ G +TL E + F
Sbjct: 629 STDRAARGLDSFSNRPITHVIQYDVPRSLTGYIHRVGRTARAGRDGDAWTLYTHSEARWF 688
Query: 448 KKLLQKADN--DSCPIHSIPSSLI-ESLRPVYKSVRGGISDEAF 488
+ KA N + + + + + LR Y+++ G + +E F
Sbjct: 689 VNEITKASNVKRAGAVERVKVFMSDDGLRERYQTILGSMREEVF 732
>gi|157138136|ref|XP_001664143.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
gi|108869558|gb|EAT33783.1| AAEL013950-PA [Aedes aegypti]
Length = 495
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 114/393 (29%), Positives = 194/393 (49%), Gaps = 64/393 (16%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117
+ +E I L +D+ + TGSGKT ++ALPI+Q L R A+++ PTR+LA Q+
Sbjct: 83 IQREAIPLALQGKDVIGLAETGSGKTGAFALPILQALLENPQRYF-AVILTPTRELAYQI 141
Query: 118 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177
+ F A+ ++G+ + VG + + L ++P I++
Sbjct: 142 SEQFEALGASIGIKCCVIVGGMDMVSQALHLARKPH---------------------III 180
Query: 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 237
ATPGRL+DH+ T+GF L+ + YLV+DE DR+L ++ L +L++ +
Sbjct: 181 ATPGRLVDHLENTKGFNLKAVKYLVMDEADRILNLDFEVELEKILKVIPRERR------- 233
Query: 238 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 297
TFL SAT+T+ KL + L P+ +
Sbjct: 234 TFL-------------------------------FSATMTKKVKKLERASLKDPVKVEVS 262
Query: 298 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 357
++Y+ E+L Y + +K K +YLV +L L ++F S+ +T R +L G
Sbjct: 263 -SKYQTVEKLLQYYIFIPAKYKDVYLVHILNELAGNSFMIFCSTCNNTVRTALMLRALGL 321
Query: 358 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417
+ + G Q+ R L F+ Q+L+S+D +RG+D+ V+ V+N+D P + K
Sbjct: 322 AAVPL---HGQMSQNKRLAALNKFKGKNRQILISTDVASRGLDIPHVDVVLNFDIPTHSK 378
Query: 418 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
YIHR GRTARAG+ G+ T + + +V+ ++++
Sbjct: 379 DYIHRVGRTARAGRAGKAVTFVTQYDVELYQRI 411
>gi|452845537|gb|EME47470.1| hypothetical protein DOTSEDRAFT_146146 [Dothistroma septosporum
NZE10]
Length = 570
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 134/438 (30%), Positives = 217/438 (49%), Gaps = 81/438 (18%)
Query: 71 DLCINSPTGSGKTLSYALPIVQTLS-NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129
D+ +N+PTGSGKT++Y LPI++ L + A L AL+++PTR+L QV V ++A
Sbjct: 111 DVAVNAPTGSGKTIAYLLPIIEALRRSHAPGELSALIIVPTRELVQQVAAVAESLAKGSD 170
Query: 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ--------------SAVDI 175
+ VG++ + DE ++I G YDP Q++ SAV++
Sbjct: 171 ICVGMSGSTGTFRDEQGKIIN-----CGQRYDPAGYQQQIDDAVNGLVQHVPTYDSAVNV 225
Query: 176 LVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV-LQLTRSDNENRFS 234
LVATPGRL++HIN T GF L L +LV+DE D+LL Y+ +L ++ ++L R
Sbjct: 226 LVATPGRLLEHINNTPGFNLVRLTWLVIDEADKLLDNQYEGFLESLNVELERPRTTEEQD 285
Query: 235 DASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL 294
+L R+ G ++++ ++ K++LSAT+T+D +KL L L P +
Sbjct: 286 ARECYL----------RQKGRWEEWRER---KIRKIILSATMTKDISKLTTLKLRRPQMV 332
Query: 295 TTGETR-----------------------YKLPERLESYKL-ICESKLKPLYLVALL--- 327
T ++LP L Y + + + KPL LL
Sbjct: 333 VVRGTECEQQMIAGAELMKEDGVKQTVDGFELPRTLVEYSIPVGDGAEKPLIAFELLRTQ 392
Query: 328 ---QSLGEEK-------CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKT 377
+S +EK ++FTS ES RL LL +S V++
Sbjct: 393 ILRESDSKEKSQTDTPTVLIFTSRNESATRLSHLLKGIQ------PSWSRYITTLVKTTK 446
Query: 378 LKAF-REGKIQVLVSSDAMTRGMD-VEG--VNNVVNYDKPAYIKTYIHRAGRTARAGQLG 433
L+ ++ + ++VS+D RG+D + G + +VV YD P +++Y+HR GRTARAG+ G
Sbjct: 447 LRVTSKKSEPAIIVSTDRAARGLDNIAGRPITHVVQYDVPRSVESYVHRVGRTARAGRSG 506
Query: 434 RCFTLLHKDEVKRFKKLL 451
+ +TL+ + E K F + +
Sbjct: 507 QAWTLVTRAEGKWFNETI 524
>gi|397644308|gb|EJK76339.1| hypothetical protein THAOC_01902 [Thalassiosira oceanica]
Length = 476
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 111/393 (28%), Positives = 192/393 (48%), Gaps = 60/393 (15%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117
+ +I P L RD+ + TGSGKT ++++P++ L + R + A+++ PTR+LA Q+
Sbjct: 80 IQASSIPPALEGRDVIGLAETGSGKTGAFSIPVLNYLLEKPQRSVFAVILAPTRELAFQI 139
Query: 118 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177
+V AA+ +G S VG +A + L + P ++V
Sbjct: 140 HEVVAALGSGMGASSVCVVGGVDMASQAIALARNPH---------------------VVV 178
Query: 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 237
ATPGRL+DH+ T+GF L + YLV+DE DR+L ++ + +L++
Sbjct: 179 ATPGRLLDHLQNTKGFHLRQIKYLVLDEADRMLSMDFEREINEILEV------------- 225
Query: 238 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 297
+P G +T M+ SAT+T KL + L P+ +
Sbjct: 226 --IPDHEGGRRT--------------------MLFSATMTSKVEKLQRASLVDPVRVEV- 262
Query: 298 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 357
T+++ P++L L +K K YL L+ + +VF ++ + RL +L + G
Sbjct: 263 STKFQTPKKLLQSYLFIPAKYKDCYLTYLINEHAGQSILVFGATCNNVQRLALMLRNLGF 322
Query: 358 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417
I + G Q R L F+ G +++ +D +RG+D+ V+ V+N+D P + K
Sbjct: 323 PAICLH---GQMSQPKRLGALTKFKAGGRDIMICTDVASRGLDIPSVDVVINFDLPGHGK 379
Query: 418 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
YIHR GRTARAG+ G+ ++ + +V+ +++L
Sbjct: 380 DYIHRVGRTARAGRSGKAIAMVTQYDVEVYQRL 412
>gi|196000560|ref|XP_002110148.1| hypothetical protein TRIADDRAFT_21567 [Trichoplax adhaerens]
gi|190588272|gb|EDV28314.1| hypothetical protein TRIADDRAFT_21567, partial [Trichoplax
adhaerens]
Length = 424
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 117/392 (29%), Positives = 194/392 (49%), Gaps = 64/392 (16%)
Query: 61 ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV 120
E I L +D+ + TGSGKT ++ LPI+Q L ++ R L AL++ PTR+LA Q+ +
Sbjct: 24 EAIPVALTGKDIIGLAETGSGKTAAFVLPILQALLDKPQR-LFALILTPTRELAFQISEQ 82
Query: 121 FAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180
A+ ++G+ + +G + + L K+P I++ TP
Sbjct: 83 IEALGSSIGVQCAVIIGGIDMMTQSIMLAKKP---------------------HIIIGTP 121
Query: 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFL 240
GRL DH+ T+GF+L L YLV+DE DR+L ++A + +L + L
Sbjct: 122 GRLADHLANTKGFSLRPLKYLVMDEADRILNMDFEAEVDKIL---------------SVL 166
Query: 241 PSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR 300
P RR + SAT+T+ KL + + P+ + T+
Sbjct: 167 PKE-------RRT----------------YLFSATMTKKVKKLQRASVQDPVKIEVS-TK 202
Query: 301 YKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRI 360
Y E+L+ + +K K YLV++L L +VF ++ +T R+ +L + G I
Sbjct: 203 YTTVEKLQQTYIFVPAKYKDCYLVSILNELAGNSFMVFCATCINTQRIGLMLRNLGFNAI 262
Query: 361 KIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYI 420
+ G QS R L F+ + +LV++D +RG+D+ V+ V+N+D P++ K YI
Sbjct: 263 PL---HGQMSQSKRLGALHKFKSKESSILVATDVASRGLDIPHVDIVINFDAPSHSKDYI 319
Query: 421 HRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 452
HR GRTARAG+ GR + + +V+ F+++ Q
Sbjct: 320 HRVGRTARAGRSGRSIIFVTQYDVELFQRIEQ 351
>gi|367044830|ref|XP_003652795.1| hypothetical protein THITE_2114564 [Thielavia terrestris NRRL 8126]
gi|347000057|gb|AEO66459.1| hypothetical protein THITE_2114564 [Thielavia terrestris NRRL 8126]
Length = 490
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 121/388 (31%), Positives = 186/388 (47%), Gaps = 63/388 (16%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117
+ +++I L RD+ + TGSGKT ++ALPI+Q L ++ + L ALV+ PTR+LA Q+
Sbjct: 88 IQEQSIPLALQGRDIIGIAETGSGKTAAFALPILQALLDKP-QPLFALVLAPTRELAAQI 146
Query: 118 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177
F A+ + L L +G + + L K+P ++V
Sbjct: 147 TQAFEALGSLISLRCALILGGLDMVQQAIALGKKPH---------------------VVV 185
Query: 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 237
ATPGRL+DH+ T+GF+L +L YLV+DE DRLL + L +L+
Sbjct: 186 ATPGRLLDHLEKTKGFSLRNLKYLVMDEADRLLDMDFGPILEKILK-------------- 231
Query: 238 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 297
FLP RR + SAT++ L + L PL ++
Sbjct: 232 -FLPRE-------RRT----------------FLFSATMSSKVESLQRASLRDPLKVSIS 267
Query: 298 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 357
++Y+ L L K YL+ L + I+FT +V T R+ LL G
Sbjct: 268 SSKYQTVATLVQNYLFIPHMHKDTYLIYLCNEFAGQTIIIFTRTVLETQRIAILLRTLGM 327
Query: 358 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417
I + + GL QS R L FR G +LV++D RG+D+ V+ V+N+D P K
Sbjct: 328 GAIPL--HGGLS-QSARLGALNKFRAGSRNILVATDVAARGLDIPNVDCVLNFDLPQDSK 384
Query: 418 TYIHRAGRTARAGQLGRCFTLLHKDEVK 445
TY+HR GRTARAG+ G +++ + +++
Sbjct: 385 TYVHRVGRTARAGKSGHAISIVTQYDIE 412
>gi|195443116|ref|XP_002069285.1| GK21047 [Drosophila willistoni]
gi|194165370|gb|EDW80271.1| GK21047 [Drosophila willistoni]
Length = 507
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 117/393 (29%), Positives = 192/393 (48%), Gaps = 64/393 (16%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117
+ +E I L +D+ + TGSGKT ++ALPI+Q L R ALV+ PTR+LA Q+
Sbjct: 81 IQKEAIPVALQGKDVIGLAETGSGKTGAFALPILQALLENPQRYF-ALVLTPTRELAFQI 139
Query: 118 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177
+ F A+ +G+ + VG + + +L K+P I++
Sbjct: 140 GEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPH---------------------III 178
Query: 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 237
ATPGRL+DH+ +GF L+ + YLV+DE DR+L ++ L +L++
Sbjct: 179 ATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKV------------- 225
Query: 238 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 297
LP RR + SAT+T+ KL + L P+ +
Sbjct: 226 --LPRE-------RRT----------------FLFSATMTKKVKKLQRASLKDPVKVEVS 260
Query: 298 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 357
+Y+ E+L+ L K K +YLV +L L ++F S+ +T + +L G
Sbjct: 261 -NKYQTVEQLQQSYLFIPVKYKDVYLVHILNELAGNSFMIFCSTCNNTVKTALMLRALGL 319
Query: 358 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417
I + G Q+ R L F+ +L+S+D +RG+D+ V+ VVN+D P + K
Sbjct: 320 AAIPL---HGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSK 376
Query: 418 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
YIHR GRTARAG+ GR T++ + +++ ++++
Sbjct: 377 DYIHRVGRTARAGRSGRAITMVSQYDIELYQRI 409
>gi|37362659|ref|NP_011932.2| RNA-dependent ATPase RRP3 [Saccharomyces cerevisiae S288c]
gi|81175193|sp|P38712.2|RRP3_YEAST RecName: Full=ATP-dependent rRNA helicase RRP3; AltName:
Full=Ribosomal RNA-processing protein 3
gi|285809971|tpg|DAA06758.1| TPA: RNA-dependent ATPase RRP3 [Saccharomyces cerevisiae S288c]
gi|392298867|gb|EIW09962.1| Rrp3p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 501
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 130/452 (28%), Positives = 210/452 (46%), Gaps = 74/452 (16%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P L A +N+ S P+Q + I P L D+ + TGSGKT ++A+PI+ L
Sbjct: 88 LVPELIQACKNLNYSKPTPIQ----SKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRL 143
Query: 95 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
+ A ++ PTR+LA Q+K+ F ++ +G+ VG ++ D+ +L+++P
Sbjct: 144 WHDQ-EPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPH- 201
Query: 155 EAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY 214
I++ATPGRLMDH+ T+GF+L L +LV+DE DRLL +
Sbjct: 202 --------------------IIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEF 241
Query: 215 QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274
L +L++ P + SA
Sbjct: 242 GPVLDRILKII-------------------------------------PTQERTTYLFSA 264
Query: 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEK 334
T+T +KL + L +P+ +Y+ + L ++ LK YL+ LL +
Sbjct: 265 TMTSKIDKLQRASLTNPVKCAVS-NKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFIGKT 323
Query: 335 CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394
I+FT + + RL L N L G Q+ R +L F+ GK +LV++D
Sbjct: 324 MIIFTRTKANAERLSGLCNL---LEFSATALHGDLNQNQRMGSLDLFKAGKRSILVATDV 380
Query: 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK---RFKKLL 451
RG+D+ V+ VVNYD P K+YIHR GRTARAG+ G+ +L+ + +++ R +++L
Sbjct: 381 AARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEEVL 440
Query: 452 QKADNDSCPIHSIPSSLIESLRPVYKSVRGGI 483
K P S+ ++I +LR G +
Sbjct: 441 GK----KLPKESVDKNIILTLRDSVDKANGEV 468
>gi|157376496|ref|YP_001475096.1| DEAD/DEAH box helicase [Shewanella sediminis HAW-EB3]
gi|157318870|gb|ABV37968.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
HAW-EB3]
Length = 419
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 134/422 (31%), Positives = 200/422 (47%), Gaps = 81/422 (19%)
Query: 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQT 93
L +L L +G SS P+Q I L +D+ + TG+GKT ++ALPI+Q
Sbjct: 7 ALSQKLITLLSELGYSSPTPIQA----HAIPVILAGQDIMAGAQTGTGKTAAFALPILQK 62
Query: 94 LS-----------NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIA 142
LS +++ +RALV+ PTR+LALQV FA GL+ + G
Sbjct: 63 LSECDVELSDTKQTVSLKPVRALVLTPTRELALQVNQSFAKYGKDSGLNTAIVYG----- 117
Query: 143 DEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYL 201
G+ D + L++ VDILVATPGRL+DH+ RG TL+ L +L
Sbjct: 118 --------------GVSIDAQ--ADALKAGVDILVATPGRLLDHLR--RGSLTLKQLNFL 159
Query: 202 VVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKD 261
V DE DR+L ++ + +L+ S + A TF PS F
Sbjct: 160 VFDEADRMLDMGFKDEINAILKQVPSKRQTLLFSA-TFDPSVFA---------------- 202
Query: 262 KPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPL 321
LS L QDP KL ++D + L + Y + +S +LIC
Sbjct: 203 ----------LSKRLQQDP-KLIEVDKRNTLAAKVEQVVYAVDADRKS-ELICH------ 244
Query: 322 YLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 381
L++S ++ ++F+ + + + G IK + + G Q+VR K L+ F
Sbjct: 245 ----LVKSKLWQQVLIFSRKKQGADNIAAKMVKAG---IKAQAFHGDLSQAVREKALQQF 297
Query: 382 REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK 441
++G+IQVLV++D RG+DVE + VVNY+ P + YIHR GRT RAG G TL +
Sbjct: 298 KQGEIQVLVATDVAARGLDVEELKVVVNYELPFIAEDYIHRIGRTGRAGNAGLAITLYSE 357
Query: 442 DE 443
++
Sbjct: 358 ED 359
>gi|194759163|ref|XP_001961819.1| GF14739 [Drosophila ananassae]
gi|190615516|gb|EDV31040.1| GF14739 [Drosophila ananassae]
Length = 525
Score = 172 bits (435), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 116/393 (29%), Positives = 193/393 (49%), Gaps = 64/393 (16%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117
+ +E I L +D+ + TGSGKT ++ALPI+ L R ALV+ PTR+LA Q+
Sbjct: 97 IQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLENPQRFF-ALVLTPTRELAFQI 155
Query: 118 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177
+ F A+ ++G+ + VG + + +L K+P I++
Sbjct: 156 GEQFEALGSSIGIKCCVVVGGMDMVAQGLQLAKKPH---------------------III 194
Query: 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 237
ATPGRL+DH+ +GF L+ + YLV+DE DR+L ++ L +L++
Sbjct: 195 ATPGRLVDHLENMKGFNLKSIKYLVMDEADRILNMDFEVELDKILKV------------- 241
Query: 238 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 297
LP RR + SAT+T+ KL + L P+ +
Sbjct: 242 --LPRE-------RRT----------------FLFSATMTKKVKKLQRASLKDPVKVEVS 276
Query: 298 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 357
+Y+ E+L+ Y L K K +YLV +L L ++F S+ +T + +L G
Sbjct: 277 -NKYQTVEQLQQYYLFIPVKYKDVYLVHILNELAGNSFMIFCSTCNNTVKTALMLRALGL 335
Query: 358 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417
I + G Q+ R L F+ +L+S+D +RG+D+ V+ V+N+D P + K
Sbjct: 336 AAIPL---HGQMSQNKRLAALNKFKAKDRSILISTDVASRGLDIPHVDVVLNFDIPTHSK 392
Query: 418 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
YIHR GRTARAG+ G+ TL+ + +++ ++++
Sbjct: 393 DYIHRVGRTARAGRSGKAITLVSQYDIELYQRI 425
>gi|259146813|emb|CAY80069.1| Rrp3p [Saccharomyces cerevisiae EC1118]
gi|365765178|gb|EHN06690.1| Rrp3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 501
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 130/452 (28%), Positives = 209/452 (46%), Gaps = 74/452 (16%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P L A +N+ S P+Q + I P L D+ + TGSGKT ++A+PI+ L
Sbjct: 88 LVPELIQACKNLNYSKPTPIQ----SKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRL 143
Query: 95 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
+ A ++ PTR+LA Q+K+ F ++ +G+ VG ++ D+ +L+++P
Sbjct: 144 WHDQ-EPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPH- 201
Query: 155 EAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY 214
I++ATPGRLMDH+ T+GF+L L +LV+DE DRLL +
Sbjct: 202 --------------------IIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEF 241
Query: 215 QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274
L +L++ P + SA
Sbjct: 242 GPVLDRILKII-------------------------------------PTQERTTYLFSA 264
Query: 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEK 334
T+T +KL + L +P+ +Y+ + L ++ LK YL+ LL +
Sbjct: 265 TMTSKIDKLQRASLTNPVKCAVS-NKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFIGKT 323
Query: 335 CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394
I+FT + + RL L N L G Q+ R L F+ GK +LV++D
Sbjct: 324 MIIFTRTKANAERLSGLCNL---LEFSATALHGDLNQNQRMGALDLFKAGKRSILVATDV 380
Query: 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK---RFKKLL 451
RG+D+ V+ VVNYD P K+YIHR GRTARAG+ G+ +L+ + +++ R +++L
Sbjct: 381 AARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEEVL 440
Query: 452 QKADNDSCPIHSIPSSLIESLRPVYKSVRGGI 483
K P S+ ++I +LR G +
Sbjct: 441 GK----KLPKESVDKNIILTLRDSVDKANGEV 468
>gi|310801624|gb|EFQ36517.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
Length = 480
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 122/398 (30%), Positives = 185/398 (46%), Gaps = 67/398 (16%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101
A N+G + P+Q ++I L RD+ + TGSGKT ++ALP++Q L + +
Sbjct: 66 ACANLGYTKPTPIQA----QSIPHALANRDIIGLAETGSGKTAAFALPVIQALLEKP-QA 120
Query: 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD 161
LV+ PTR+LA Q+ F A+ + L + VG + + L K+P
Sbjct: 121 FFGLVLAPTRELAAQIGQQFEALGSLISLRTAVIVGGLDMVAQAIALGKKPH-------- 172
Query: 162 PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 221
++VATPGRL+DH+ T+GF+L L YLV+DE DRLL + + +
Sbjct: 173 -------------VIVATPGRLVDHLEKTKGFSLRSLKYLVMDEADRLLDMDFGPSIDKI 219
Query: 222 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 281
L+ F+P RR + SAT++
Sbjct: 220 LK---------------FIPRE-------RRT----------------FLFSATMSSKIE 241
Query: 282 KLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 341
L + L P+ ++ +Y+ L Y L +LK YLV L +K +VFT +
Sbjct: 242 SLQRASLRDPVRVSISSNKYQTVSTLLQYYLFIPHQLKDTYLVYLANEFAGKKLVVFTRT 301
Query: 342 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 401
V T RL LL G I + G Q+ R L FR G+ +LV++D RG+D+
Sbjct: 302 VSETQRLAILLRTLGFGAIPLH---GQLNQTARLGALNKFRAGERSILVATDVAARGLDI 358
Query: 402 EGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439
V+ V+N+D KT++HR GRTARAG+ G +L+
Sbjct: 359 PLVDVVINHDLAQDSKTHVHRIGRTARAGKSGIALSLV 396
>gi|160358662|sp|A6ZSX1.1|RRP3_YEAS7 RecName: Full=ATP-dependent rRNA helicase RRP3; AltName:
Full=Ribosomal RNA-processing protein 3
gi|151944009|gb|EDN62302.1| ribosomal RNA processing protein [Saccharomyces cerevisiae YJM789]
gi|190405848|gb|EDV09115.1| weak RNA-dependent ATPase activity which is not specific for rRNA
[Saccharomyces cerevisiae RM11-1a]
gi|256270568|gb|EEU05749.1| Rrp3p [Saccharomyces cerevisiae JAY291]
gi|323333235|gb|EGA74633.1| Rrp3p [Saccharomyces cerevisiae AWRI796]
Length = 501
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 130/452 (28%), Positives = 209/452 (46%), Gaps = 74/452 (16%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P L A +N+ S P+Q + I P L D+ + TGSGKT ++A+PI+ L
Sbjct: 88 LVPELIQACKNLNYSKPTPIQ----SKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRL 143
Query: 95 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
+ A ++ PTR+LA Q+K+ F ++ +G+ VG ++ D+ +L+++P
Sbjct: 144 WHDQ-EPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPH- 201
Query: 155 EAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY 214
I++ATPGRLMDH+ T+GF+L L +LV+DE DRLL +
Sbjct: 202 --------------------IIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEF 241
Query: 215 QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274
L +L++ P + SA
Sbjct: 242 GPVLDRILKII-------------------------------------PTQERTTYLFSA 264
Query: 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEK 334
T+T +KL + L +P+ +Y+ + L ++ LK YL+ LL +
Sbjct: 265 TMTSKIDKLQRASLTNPVKCAVS-NKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFIGKT 323
Query: 335 CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394
I+FT + + RL L N L G Q+ R L F+ GK +LV++D
Sbjct: 324 MIIFTRTKANAERLSGLCNL---LEFSATALHGDLNQNQRMGALDLFKAGKRSILVATDV 380
Query: 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK---RFKKLL 451
RG+D+ V+ VVNYD P K+YIHR GRTARAG+ G+ +L+ + +++ R +++L
Sbjct: 381 AARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEEVL 440
Query: 452 QKADNDSCPIHSIPSSLIESLRPVYKSVRGGI 483
K P S+ ++I +LR G +
Sbjct: 441 GK----KLPKESVDKNIILTLRDSVDKANGEV 468
>gi|323354635|gb|EGA86470.1| Rrp3p [Saccharomyces cerevisiae VL3]
Length = 501
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 130/452 (28%), Positives = 209/452 (46%), Gaps = 74/452 (16%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P L A +N+ S P+Q + I P L D+ + TGSGKT ++A+PI+ L
Sbjct: 88 LVPELIQACKNLNYSKPTPIQ----SKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRL 143
Query: 95 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
+ A ++ PTR+LA Q+K+ F ++ +G+ VG ++ D+ +L+++P
Sbjct: 144 WHDQ-EPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPH- 201
Query: 155 EAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY 214
I++ATPGRLMDH+ T+GF+L L +LV+DE DRLL +
Sbjct: 202 --------------------IIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEF 241
Query: 215 QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274
L +L++ P + SA
Sbjct: 242 GPVLDRILKII-------------------------------------PTQERTTYLFSA 264
Query: 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEK 334
T+T +KL + L +P+ +Y+ + L ++ LK YL+ LL +
Sbjct: 265 TMTSKIDKLQRASLTNPVKCAVS-NKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFIGKT 323
Query: 335 CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394
I+FT + + RL L N L G Q+ R L F+ GK +LV++D
Sbjct: 324 MIIFTRTKANAERLSGLCNL---LEFSATALHGDLNQNQRMGALDLFKAGKRSILVATDV 380
Query: 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK---RFKKLL 451
RG+D+ V+ VVNYD P K+YIHR GRTARAG+ G+ +L+ + +++ R +++L
Sbjct: 381 AARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEEVL 440
Query: 452 QKADNDSCPIHSIPSSLIESLRPVYKSVRGGI 483
K P S+ ++I +LR G +
Sbjct: 441 GK----KLPKESVDKNIILTLRDSVDKANGEV 468
>gi|254580545|ref|XP_002496258.1| ZYRO0C14234p [Zygosaccharomyces rouxii]
gi|238939149|emb|CAR27325.1| ZYRO0C14234p [Zygosaccharomyces rouxii]
Length = 494
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 131/450 (29%), Positives = 209/450 (46%), Gaps = 74/450 (16%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96
P L A +N+ P+Q I P L RD+ + TGSGKT ++A+PI+ L
Sbjct: 81 PELIEACKNLNFDKPTPIQA----RAIPPALEGRDIIGLAQTGSGKTAAFAIPILNRLWE 136
Query: 97 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 156
+ A V+ PTR+LA Q K+ F ++ +G+ VG ++ D+ EL+++P
Sbjct: 137 DK-QPYYACVLAPTRELAQQTKETFDSLGALMGVRSTCIVGGMNMMDQARELMRKPH--- 192
Query: 157 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 216
I++ATPGRLMDH+ T+GF+L L +LV+DE DRLL +
Sbjct: 193 ------------------IIIATPGRLMDHLENTKGFSLRKLRFLVMDEADRLLDMEFGP 234
Query: 217 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 276
L +L++ + D +T+L SAT+
Sbjct: 235 VLDKILKVIPT------QDRTTYL-------------------------------FSATM 257
Query: 277 TQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCI 336
T +KL + L P+ +Y+ + L ++ S LK YL+ LL + I
Sbjct: 258 TSKIDKLQRASLTEPVKCAVS-NKYQTVDTLVQTLMVVPSGLKNTYLIYLLNENIGKTVI 316
Query: 337 VFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT 396
+FT + + RL L N L G Q+ R+ L F+ G+ +LV++D
Sbjct: 317 IFTRTKANAERLSALCNL---LEFNATALHGDLNQNQRTGALDLFKAGRRSILVATDVAA 373
Query: 397 RGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK---RFKKLLQK 453
RG+D+ V+ V+NYD P K+YIHR GRTARAG+ G+ +L+ + +++ R +++L K
Sbjct: 374 RGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEEVLGK 433
Query: 454 ADNDSCPIHSIPSSLIESLRPVYKSVRGGI 483
P + ++ SLR G +
Sbjct: 434 ----KLPKENCDKEVVISLRDSVDKANGEV 459
>gi|487961|gb|AAB68392.1| Yhr065cp [Saccharomyces cerevisiae]
Length = 543
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 130/452 (28%), Positives = 210/452 (46%), Gaps = 74/452 (16%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P L A +N+ S P+Q + I P L D+ + TGSGKT ++A+PI+ L
Sbjct: 130 LVPELIQACKNLNYSKPTPIQ----SKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRL 185
Query: 95 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
+ A ++ PTR+LA Q+K+ F ++ +G+ VG ++ D+ +L+++P
Sbjct: 186 WHDQ-EPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPH- 243
Query: 155 EAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY 214
I++ATPGRLMDH+ T+GF+L L +LV+DE DRLL +
Sbjct: 244 --------------------IIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEF 283
Query: 215 QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274
L +L++ P + SA
Sbjct: 284 GPVLDRILKII-------------------------------------PTQERTTYLFSA 306
Query: 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEK 334
T+T +KL + L +P+ +Y+ + L ++ LK YL+ LL +
Sbjct: 307 TMTSKIDKLQRASLTNPVKCAVS-NKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFIGKT 365
Query: 335 CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394
I+FT + + RL L N L G Q+ R +L F+ GK +LV++D
Sbjct: 366 MIIFTRTKANAERLSGLCNL---LEFSATALHGDLNQNQRMGSLDLFKAGKRSILVATDV 422
Query: 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK---RFKKLL 451
RG+D+ V+ VVNYD P K+YIHR GRTARAG+ G+ +L+ + +++ R +++L
Sbjct: 423 AARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEEVL 482
Query: 452 QKADNDSCPIHSIPSSLIESLRPVYKSVRGGI 483
K P S+ ++I +LR G +
Sbjct: 483 GK----KLPKESVDKNIILTLRDSVDKANGEV 510
>gi|323308818|gb|EGA62055.1| Rrp3p [Saccharomyces cerevisiae FostersO]
Length = 501
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 130/452 (28%), Positives = 209/452 (46%), Gaps = 74/452 (16%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P L A +N+ S P+Q + I P L D+ + TGSGKT ++A+PI+ L
Sbjct: 88 LVPELIQACKNLNYSKPTPIQ----SKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRL 143
Query: 95 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
+ A ++ PTR+LA Q+K+ F ++ +G+ VG ++ D+ +L+++P
Sbjct: 144 WHDQ-EPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPH- 201
Query: 155 EAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY 214
I++ATPGRLMDH+ T+GF+L L +LV+DE DRLL +
Sbjct: 202 --------------------IIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEF 241
Query: 215 QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274
L +L++ P + SA
Sbjct: 242 GPVLDRILKII-------------------------------------PTQERTTYLFSA 264
Query: 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEK 334
T+T +KL + L +P+ +Y+ + L ++ LK YL+ LL +
Sbjct: 265 TMTSKIDKLQRASLTNPVKCAVS-NKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFIGKT 323
Query: 335 CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394
I+FT + + RL L N L G Q+ R L F+ GK +LV++D
Sbjct: 324 MIIFTRTKANAERLSGLCNL---LEFSATALHGDLNQNQRMGALDLFKAGKRSILVATDV 380
Query: 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK---RFKKLL 451
RG+D+ V+ VVNYD P K+YIHR GRTARAG+ G+ +L+ + +++ R +++L
Sbjct: 381 AARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEEVL 440
Query: 452 QKADNDSCPIHSIPSSLIESLRPVYKSVRGGI 483
K P S+ ++I +LR G +
Sbjct: 441 GK----KLPKESVDKNIILTLRXSVDKANGEV 468
>gi|312370859|gb|EFR19169.1| hypothetical protein AND_22947 [Anopheles darlingi]
Length = 490
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 114/393 (29%), Positives = 194/393 (49%), Gaps = 64/393 (16%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117
+ +E I L +D+ + TGSGKT ++ALPI+Q L + R A+V+ PTR+LA Q+
Sbjct: 74 IQREAIPLALNGKDIIGLAETGSGKTAAFALPILQALLDNPQRYF-AVVLTPTRELAYQI 132
Query: 118 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177
+ F A+ +G+ + VG + + +L ++P I++
Sbjct: 133 SEQFEALGTMIGVKCCVVVGGMDLVAQALQLARKPH---------------------III 171
Query: 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 237
ATPGRL+DH+ T+GF L+ L YLV+DE DR+L ++ + +L++ +
Sbjct: 172 ATPGRLVDHLENTKGFGLKALKYLVMDEADRILNMDFEVEVNKILRVIPRERR------- 224
Query: 238 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 297
TFL SAT+T+ KL + L P+ +
Sbjct: 225 TFL-------------------------------FSATMTKKVKKLERASLRDPVKVEVS 253
Query: 298 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 357
++Y+ ++L Y + +K K +YLV +L L ++F S+ +T R +L G
Sbjct: 254 -SKYQTVDKLLQYYIFIPAKYKDVYLVHILNELAGNSFMIFCSTCNNTVRTALMLRALGL 312
Query: 358 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417
+ + G Q+ R L F+ Q+L+S+D +RG+D+ V+ V+N D P + K
Sbjct: 313 AAVPL---HGQMTQNKRLAALNKFKSQTRQILISTDVASRGLDIPHVDVVLNLDIPMHSK 369
Query: 418 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
YIHR GRTARAG+ G+ T + + +V+ ++++
Sbjct: 370 DYIHRVGRTARAGRAGQAITFVTQYDVELYQRI 402
>gi|401625423|gb|EJS43432.1| rrp3p [Saccharomyces arboricola H-6]
Length = 500
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 131/452 (28%), Positives = 214/452 (47%), Gaps = 74/452 (16%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P L A +N+ S P+Q ++I P L D+ + TGSGKT ++A+PI+ L
Sbjct: 87 LVPELIQACKNLNYSKPTPIQ----SKSIPPALKGHDIIGLAQTGSGKTAAFAIPILNRL 142
Query: 95 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
+ A ++ PTR+LA Q+K+ F ++ +G+ VG ++ D+ +L+++P
Sbjct: 143 WHDQ-EPYYACILAPTRELAQQIKEAFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPH- 200
Query: 155 EAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY 214
I++ATPGRLMDH+ T+GF+L L +LV+DE DRLL +
Sbjct: 201 --------------------IIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEF 240
Query: 215 QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274
L +L++ + + +T+L SA
Sbjct: 241 GPVLDRILKIIPT------QERTTYL-------------------------------FSA 263
Query: 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEK 334
T+T +KL + L +P+ +Y+ + L ++ LK YLV LL +
Sbjct: 264 TMTSKIDKLQRASLTNPVKCAVS-NKYQTVDTLVQTLMVVPGGLKNTYLVYLLNEFIGKT 322
Query: 335 CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394
I+FT + + RL L N L G Q+ R L F+ GK +LV++D
Sbjct: 323 MIIFTRTKANAERLSGLCNL---LEFSATALHGDLNQNQRMGALDLFKAGKRAILVATDV 379
Query: 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK---RFKKLL 451
RG+D+ V+ VVNYD P K+YIHR GRTARAG+ G+ +L+ + +++ R +++L
Sbjct: 380 AARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEEVL 439
Query: 452 QKADNDSCPIHSIPSSLIESLRPVYKSVRGGI 483
K P ++ ++I +LR G +
Sbjct: 440 GK----KLPKENVDKNIILTLRDSVDKANGEV 467
>gi|223999113|ref|XP_002289229.1| atp-depedent helicase [Thalassiosira pseudonana CCMP1335]
gi|220974437|gb|EED92766.1| atp-depedent helicase [Thalassiosira pseudonana CCMP1335]
Length = 435
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 118/416 (28%), Positives = 203/416 (48%), Gaps = 64/416 (15%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P L ++ ++ ++ +Q A +I P L RD+ + TGSGKT S+A+PI+ L
Sbjct: 46 LHPSLLSSIASLQWTNPTQIQAA----SIPPALEGRDVIGLAETGSGKTGSFAIPILNYL 101
Query: 95 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
+ + + A+++ PTR+LA Q+ +V A+ +G + VG +A + L + P
Sbjct: 102 LEKPQKQVFAVILAPTRELAFQIHEVMVALGRGMGANSVCVVGGVDMASQAIALARNPH- 160
Query: 155 EAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY 214
++VATPGRL+DH+ T+GF L + YLV+DE DR+L +
Sbjct: 161 --------------------VVVATPGRLLDHLQNTKGFHLRQIKYLVMDEADRMLSMDF 200
Query: 215 QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274
+ + +L++ I C E+G + M+ SA
Sbjct: 201 EKEINEILEV-------------------------IPDC--EKGRR--------TMLFSA 225
Query: 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEK 334
T+T KL + L P+ + T+++ P++L L +K K YL L+ +
Sbjct: 226 TMTSKVEKLQRASLVDPVRVEV-STKFQTPKKLLQNYLFIPAKYKDCYLTYLINEHAGQS 284
Query: 335 CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394
+VF ++ + RL +L + G I + G Q R L F+ G +L+ +D
Sbjct: 285 ILVFGATCNNVQRLALMLRNLGFPAICLH---GQMSQPKRLGALTKFKSGGRDILICTDV 341
Query: 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
+RG+D+ V+ V+N+D P + K YIHR GRTARAG+ G+ ++ + +V+ +++L
Sbjct: 342 ASRGLDIPSVDVVINFDLPGHGKDYIHRVGRTARAGRSGKAIAMVTQYDVEVYQRL 397
>gi|349578615|dbj|GAA23780.1| K7_Rrp3p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 501
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 130/452 (28%), Positives = 209/452 (46%), Gaps = 74/452 (16%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P L A +N+ S P+Q + I P L D+ + TGSGKT ++A+PI+ L
Sbjct: 88 LVPELIQACKNLNYSKPTPIQ----SKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRL 143
Query: 95 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
+ A ++ PTR+LA Q+K+ F ++ +G+ VG ++ D+ +L+++P
Sbjct: 144 WHDQ-EPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPH- 201
Query: 155 EAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY 214
I++ATPGRLMDH+ T+GF+L L +LV+DE DRLL +
Sbjct: 202 --------------------IVIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEF 241
Query: 215 QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274
L +L++ P + SA
Sbjct: 242 GPVLDRILKII-------------------------------------PTQERTTYLFSA 264
Query: 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEK 334
T+T +KL + L +P+ +Y+ + L ++ LK YL+ LL +
Sbjct: 265 TMTSKIDKLQRASLTNPVKCAVS-NKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFIGKT 323
Query: 335 CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394
I+FT + + RL L N L G Q+ R L F+ GK +LV++D
Sbjct: 324 MIIFTRTKANAERLSGLCNL---LEFSATALHGDLNQNQRMGALDLFKAGKRSILVATDV 380
Query: 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK---RFKKLL 451
RG+D+ V+ VVNYD P K+YIHR GRTARAG+ G+ +L+ + +++ R +++L
Sbjct: 381 AARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEEVL 440
Query: 452 QKADNDSCPIHSIPSSLIESLRPVYKSVRGGI 483
K P S+ ++I +LR G +
Sbjct: 441 GK----KLPKESVDKNIILTLRDSVDKANGEV 468
>gi|323348235|gb|EGA82484.1| Rrp3p [Saccharomyces cerevisiae Lalvin QA23]
Length = 543
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 130/452 (28%), Positives = 209/452 (46%), Gaps = 74/452 (16%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P L A +N+ S P+Q + I P L D+ + TGSGKT ++A+PI+ L
Sbjct: 130 LVPELIQACKNLNYSKPTPIQ----SKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRL 185
Query: 95 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
+ A ++ PTR+LA Q+K+ F ++ +G+ VG ++ D+ +L+++P
Sbjct: 186 WHDQ-EPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPH- 243
Query: 155 EAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY 214
I++ATPGRLMDH+ T+GF+L L +LV+DE DRLL +
Sbjct: 244 --------------------IIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEF 283
Query: 215 QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274
L +L++ P + SA
Sbjct: 284 GPVLDRILKII-------------------------------------PTQERTTYLFSA 306
Query: 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEK 334
T+T +KL + L +P+ +Y+ + L ++ LK YL+ LL +
Sbjct: 307 TMTSKIDKLQRASLTNPVKCAVS-NKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFIGKT 365
Query: 335 CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394
I+FT + + RL L N L G Q+ R L F+ GK +LV++D
Sbjct: 366 MIIFTRTKANAERLSGLCNL---LEFSATALHGDLNQNQRMGALDLFKAGKRSILVATDV 422
Query: 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK---RFKKLL 451
RG+D+ V+ VVNYD P K+YIHR GRTARAG+ G+ +L+ + +++ R +++L
Sbjct: 423 AARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEEVL 482
Query: 452 QKADNDSCPIHSIPSSLIESLRPVYKSVRGGI 483
K P S+ ++I +LR G +
Sbjct: 483 GK----KLPKESVDKNIILTLRDSVDKANGEV 510
>gi|158298749|ref|XP_318913.4| AGAP009808-PA [Anopheles gambiae str. PEST]
gi|157014035|gb|EAA14161.4| AGAP009808-PA [Anopheles gambiae str. PEST]
Length = 510
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 114/393 (29%), Positives = 195/393 (49%), Gaps = 64/393 (16%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117
+ +E I L +D+ + TGSGKT ++ALPI+Q L + R A+V+ PTR+LA Q+
Sbjct: 82 IQREAIPLALQGKDIIGLAETGSGKTGAFALPILQALLDNPQRYF-AVVLTPTRELAYQI 140
Query: 118 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177
+ F A+ +G+ + VG + + +L ++P I++
Sbjct: 141 SEQFEALGATIGVKCCVIVGGMDLVTQAIQLARKPH---------------------III 179
Query: 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 237
ATPGRL+DH+ T+GF+L+ + YLV+DE DR+L ++ + +L++ +
Sbjct: 180 ATPGRLVDHLENTKGFSLKAIRYLVMDEADRILNMDFEEEVNKILKVMPRERR------- 232
Query: 238 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 297
TFL SAT+T+ KL + L P+ +
Sbjct: 233 TFL-------------------------------FSATMTKKVKKLERASLRDPVKVEVS 261
Query: 298 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 357
++Y+ E+L Y L ++ K +YLV +L L ++F S+ +T R +L G
Sbjct: 262 -SKYQTVEKLLQYYLFIPARYKNVYLVHVLNELAGNSFMIFCSTCNNTVRTALMLRALGL 320
Query: 358 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417
+ + G Q+ R L F+ Q+L+S+D +RG+D+ V+ V+N D P + K
Sbjct: 321 AAVPL---HGQMTQNKRLAALNKFKSQARQILISTDVASRGLDIPHVDVVLNLDIPMHSK 377
Query: 418 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
YIHR GRTARAG+ G+ T + + +V+ ++++
Sbjct: 378 DYIHRVGRTARAGRAGQAITFVTQYDVELYQRI 410
>gi|323304679|gb|EGA58441.1| Rrp3p [Saccharomyces cerevisiae FostersB]
Length = 543
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 130/452 (28%), Positives = 209/452 (46%), Gaps = 74/452 (16%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P L A +N+ S P+Q + I P L D+ + TGSGKT ++A+PI+ L
Sbjct: 130 LVPELIQACKNLNYSKPTPIQ----SKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRL 185
Query: 95 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
+ A ++ PTR+LA Q+K+ F ++ +G+ VG ++ D+ +L+++P
Sbjct: 186 WHDQ-EPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPH- 243
Query: 155 EAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY 214
I++ATPGRLMDH+ T+GF+L L +LV+DE DRLL +
Sbjct: 244 --------------------IIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEF 283
Query: 215 QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274
L +L++ P + SA
Sbjct: 284 GPVLDRILKII-------------------------------------PTQERTTYLFSA 306
Query: 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEK 334
T+T +KL + L +P+ +Y+ + L ++ LK YL+ LL +
Sbjct: 307 TMTSKIDKLQRASLTNPVKCAVS-NKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFIGKT 365
Query: 335 CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394
I+FT + + RL L N L G Q+ R L F+ GK +LV++D
Sbjct: 366 MIIFTRTKANAERLSGLCNL---LEFSATALHGDLNQNQRMGALDLFKAGKRSILVATDV 422
Query: 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK---RFKKLL 451
RG+D+ V+ VVNYD P K+YIHR GRTARAG+ G+ +L+ + +++ R +++L
Sbjct: 423 AARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEEVL 482
Query: 452 QKADNDSCPIHSIPSSLIESLRPVYKSVRGGI 483
K P S+ ++I +LR G +
Sbjct: 483 GK----KLPKESVDKNIILTLRGSVDKANGEV 510
>gi|367033825|ref|XP_003666195.1| hypothetical protein MYCTH_2096529 [Myceliophthora thermophila ATCC
42464]
gi|347013467|gb|AEO60950.1| hypothetical protein MYCTH_2096529 [Myceliophthora thermophila ATCC
42464]
Length = 493
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 124/398 (31%), Positives = 186/398 (46%), Gaps = 67/398 (16%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101
A + +G + P+Q QE I L RD+ + TGSGKT ++ALPI+Q L ++ +
Sbjct: 79 ACERLGYKNPTPIQ----QEAIPLALQNRDIIGIAETGSGKTAAFALPILQALLDKP-QP 133
Query: 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD 161
L ALV+ PTR+LA Q+ F A+ + L L +G + + L K+P
Sbjct: 134 LFALVLAPTRELAAQIAQAFEALGSLISLRCALILGGLDMVQQAIALGKKPH-------- 185
Query: 162 PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 221
++VATPGRL+DH+ T+GF+L +L +LV+DE DRLL + L +
Sbjct: 186 -------------VVVATPGRLLDHLEKTKGFSLRNLKFLVMDEADRLLDMDFGPILEKI 232
Query: 222 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 281
L+ FLP RR + SAT++
Sbjct: 233 LK---------------FLPRE-------RRT----------------FLFSATMSSKVE 254
Query: 282 KLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 341
L + L PL ++ ++Y+ L + K YL+ L + I+FT +
Sbjct: 255 SLQRASLRDPLKVSISSSKYQTVSTLVQNYIFIPHMHKDTYLIYLCNEFAGQTIIIFTRT 314
Query: 342 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 401
V T R+ LL G I + + GL QS R L FR +LV++D RG+D+
Sbjct: 315 VLETQRIAILLRTLGMGAIPL--HGGLS-QSARLGALNKFRAKSRDILVATDVAARGLDI 371
Query: 402 EGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439
V+ V+N+D P KTY+HR GRTARAG+ G + +
Sbjct: 372 PNVDCVLNFDLPQDSKTYVHRVGRTARAGKSGHAISFV 409
>gi|300175700|emb|CBK21243.2| unnamed protein product [Blastocystis hominis]
Length = 485
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 119/387 (30%), Positives = 187/387 (48%), Gaps = 67/387 (17%)
Query: 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129
+D+ + TGSGKT ++A+PI+Q L + R + AL+V PTR+LA Q+ + F A+ +VG
Sbjct: 93 KDIIAIAETGSGKTGAFAIPIIQRLIDNPQR-MYALIVTPTRELAFQISEQFEALGSSVG 151
Query: 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA 189
L + VG + + L ++P ++V TPGRL+DH+
Sbjct: 152 LKTAVIVGGIDMVQQALALARKPH---------------------VVVGTPGRLVDHLEN 190
Query: 190 TRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKT 249
T+GF+L + YLV+DE DR L ++ + +L S F
Sbjct: 191 TKGFSLNTMKYLVLDEADRCLSMDFEEAIDKIL-------------------SCF----- 226
Query: 250 IRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLES 309
P R V + SAT+TQ KL + L P+ + ++Y+ L
Sbjct: 227 -------------PKER-VTYLFSATMTQKVVKLQRASLQDPVKIQVS-SKYQTVSTLIQ 271
Query: 310 YKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQ 369
L +K K YL ++ + I+F S+ S+ L L + G + I +G
Sbjct: 272 QYLFIPAKYKECYLAFIMNEFRGKSTILFVSTCSSSQLLTLFLRNLGFKAVCI---NGNL 328
Query: 370 RQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA 429
Q R L F+EG +L+++D +RG+D+ V+ VVNYD P K Y+HR GRTARA
Sbjct: 329 SQVKRLGALNKFKEGARNILIATDVASRGLDIPEVDLVVNYDIPGNGKDYVHRVGRTARA 388
Query: 430 GQLGRCFTLLHKDEV---KRFKKLLQK 453
G+ GR T + + +V +R +KL++K
Sbjct: 389 GKSGRAITFVTQYDVESYQRIEKLIEK 415
>gi|195118551|ref|XP_002003800.1| GI21075 [Drosophila mojavensis]
gi|193914375|gb|EDW13242.1| GI21075 [Drosophila mojavensis]
Length = 515
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 115/395 (29%), Positives = 193/395 (48%), Gaps = 64/395 (16%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117
+ +E I L +D+ + TGSGKT ++ALPI+ L R ALV+ PTR+LA Q+
Sbjct: 85 IQKEAIPVALQGKDIIGLAETGSGKTGAFALPILHALLENPQRYF-ALVLTPTRELAFQI 143
Query: 118 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177
+ F A+ +G+ + VG + + +L K+P I++
Sbjct: 144 GEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPH---------------------III 182
Query: 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 237
ATPGRL+DH+ +GF L+ + YLV+DE DR+L ++ L +L++
Sbjct: 183 ATPGRLVDHLENLKGFNLKAIKYLVMDEADRILNMDFEVELDKILKV------------- 229
Query: 238 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 297
LP RR + SAT+T+ KL + L P+ +
Sbjct: 230 --LPRE-------RRT----------------FLFSATMTKKVKKLQRASLKDPVKVEVS 264
Query: 298 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 357
+Y+ ++L+ Y + K K +YLV +L L ++F S+ +T + +L G
Sbjct: 265 -NKYQTVDQLQQYYIFIPVKYKDVYLVHILNELAGNSFMIFCSTCNNTVKTALMLRALGL 323
Query: 358 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417
I + G Q+ R L F+ +L+S+D +RG+D+ V+ VVN+D P + K
Sbjct: 324 AAIPL---HGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSK 380
Query: 418 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 452
YIHR GRTARAG+ G+ T++ + +++ ++++ Q
Sbjct: 381 DYIHRVGRTARAGRSGQAITMVTQYDIELYQRIEQ 415
>gi|195051805|ref|XP_001993174.1| GH13670 [Drosophila grimshawi]
gi|193900233|gb|EDV99099.1| GH13670 [Drosophila grimshawi]
Length = 518
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 116/395 (29%), Positives = 193/395 (48%), Gaps = 64/395 (16%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117
+ +E I L +D+ + TGSGKT ++ALPI+ L R ALV+ PTR+LA Q+
Sbjct: 83 IQKEAIPVALQGKDVIGLAETGSGKTGAFALPILHALLENPQRYF-ALVLTPTRELAFQI 141
Query: 118 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177
+ F A+ +G+ + VG + + +L K+P I++
Sbjct: 142 GEQFEALGSGIGIKCCVIVGGMDMVAQGLQLAKKPH---------------------III 180
Query: 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 237
ATPGRL+DH+ +GF L+ + YLV+DE DR+L ++ L +L++
Sbjct: 181 ATPGRLVDHLENLKGFNLKAIKYLVMDEADRILNMDFEVELDKILKV------------- 227
Query: 238 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 297
LP RR + SAT+T+ KL + L P+ +
Sbjct: 228 --LPRE-------RRT----------------FLFSATMTKKVKKLQRASLKDPVKVEVS 262
Query: 298 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 357
+Y+ ++L+ Y L K K +YLV +L L ++F S+ +T + +L G
Sbjct: 263 -NKYQTVDQLQQYYLFIPVKYKDVYLVHILNELAGNSFMIFCSTCNNTVKTALMLRALGL 321
Query: 358 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417
I + G Q+ R L F+ +L+S+D +RG+D+ V+ VVN+D P + K
Sbjct: 322 AAIPL---HGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSK 378
Query: 418 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 452
YIHR GRTARAG+ G+ T++ + +++ ++++ Q
Sbjct: 379 DYIHRVGRTARAGRSGQAITIVSQYDIELYQRIEQ 413
>gi|195401282|ref|XP_002059243.1| GJ16136 [Drosophila virilis]
gi|194156117|gb|EDW71301.1| GJ16136 [Drosophila virilis]
Length = 523
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 115/395 (29%), Positives = 193/395 (48%), Gaps = 64/395 (16%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117
+ +E I L +D+ + TGSGKT ++ALPI+ L R ALV+ PTR+LA Q+
Sbjct: 90 IQKEAIPVALQGKDVIGLAETGSGKTGAFALPILHALLENPQRYF-ALVLTPTRELAFQI 148
Query: 118 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177
+ F A+ +G+ + VG + + +L K+P I++
Sbjct: 149 GEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPH---------------------III 187
Query: 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 237
ATPGRL+DH+ +GF L+ + YLV+DE DR+L ++ L +L++
Sbjct: 188 ATPGRLVDHLENLKGFNLKAIKYLVMDEADRILNMDFEVELDKILKV------------- 234
Query: 238 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 297
LP RR + SAT+T+ KL + L P+ +
Sbjct: 235 --LPRE-------RRT----------------FLFSATMTKKVKKLQRASLKDPVKVEVS 269
Query: 298 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 357
+Y+ ++L+ Y + K K +YLV +L L ++F S+ +T + +L G
Sbjct: 270 -NKYQTVDQLQQYYIFIPVKYKDVYLVHILNELAGNSFMIFCSTCNNTVKTALMLRALGL 328
Query: 358 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417
I + G Q+ R L F+ +L+S+D +RG+D+ V+ VVN+D P + K
Sbjct: 329 AAIPL---HGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSK 385
Query: 418 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 452
YIHR GRTARAG+ G+ T++ + +++ ++++ Q
Sbjct: 386 DYIHRVGRTARAGRSGQAITMVTQYDIELYQRIEQ 420
>gi|367007110|ref|XP_003688285.1| hypothetical protein TPHA_0N00700 [Tetrapisispora phaffii CBS 4417]
gi|357526593|emb|CCE65851.1| hypothetical protein TPHA_0N00700 [Tetrapisispora phaffii CBS 4417]
Length = 755
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 123/410 (30%), Positives = 196/410 (47%), Gaps = 74/410 (18%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96
P LK L ++G + P+Q A TI GL +D+ + TGSGKT ++ +PI++ L
Sbjct: 230 PVLK-GLSDLGYTKPSPIQSA----TIPIGLLGKDIIAGAVTGSGKTAAFMIPIIERLLY 284
Query: 97 R--AVRCLRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPK 153
+ + R +V+ PTR+LA+QV DV I V GL+ GLAVG ++ + EL RP
Sbjct: 285 KPANIASTRVIVLTPTRELAIQVSDVGKRIGKYVNGLTFGLAVGGLNLRQQEQELKTRP- 343
Query: 154 LEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA 213
D+++ATPGR +DHI + F ++ + LV+DE DR+L +
Sbjct: 344 --------------------DVVIATPGRFIDHIRNSASFNVDSVEVLVIDEADRMLEDG 383
Query: 214 YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273
+Q L ++ L LP+ +L + S
Sbjct: 384 FQEELNEIMSL---------------LPTKRQTL-----------------------LFS 405
Query: 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESK-LKP---LYLVALLQS 329
AT+ +L L L P+ + + + + I + LKP YL+ L S
Sbjct: 406 ATMNSKIKQLISLSLRRPVRIMINPPKQAAARLTQEFVRIRKRDLLKPALLYYLIRKLDS 465
Query: 330 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 389
+++ +VF S E HRL ++ G L +K+ E G Q R +++ F+ ++ VL
Sbjct: 466 SSQKRIVVFVSRKEMAHRLRIIM---GLLGMKVAELHGSLTQEQRLQSVNQFKSLEVPVL 522
Query: 390 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439
+ +D +RG+D+ + V+NYD P + Y+HR GRTARAG+ GR T +
Sbjct: 523 ICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFV 572
>gi|195352029|ref|XP_002042518.1| GM23393 [Drosophila sechellia]
gi|194124387|gb|EDW46430.1| GM23393 [Drosophila sechellia]
Length = 519
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 116/393 (29%), Positives = 191/393 (48%), Gaps = 64/393 (16%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117
+ +E I L +D+ + TGSGKT ++ALPI+ L R ALV+ PTR+LA Q+
Sbjct: 91 IQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLENPQRYF-ALVLTPTRELAFQI 149
Query: 118 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177
+ F A+ +G+ + VG + + +L K+P I++
Sbjct: 150 GEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPH---------------------III 188
Query: 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 237
ATPGRL+DH+ +GF L+ + YLV+DE DR+L ++ L +L++
Sbjct: 189 ATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKV------------- 235
Query: 238 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 297
LP RR + SAT+T+ KL + L P+ +
Sbjct: 236 --LPRE-------RRT----------------FLFSATMTKKVKKLQRASLKDPVKIEVS 270
Query: 298 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 357
+Y+ E+L+ L K K +YLV +L L ++F S+ +T + +L G
Sbjct: 271 -NKYQTVEQLQQSYLFIPVKYKDVYLVHILNELAGNSFMIFCSTCNNTVKTALMLRALGL 329
Query: 358 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417
I + G Q+ R L F+ +L+S+D +RG+D+ V+ VVN+D P + K
Sbjct: 330 AAIPL---HGQMSQNKRLAALNKFKTKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSK 386
Query: 418 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
YIHR GRTARAG+ G+ TL+ + +++ ++++
Sbjct: 387 DYIHRVGRTARAGRSGKAITLVSQYDIELYQRI 419
>gi|21464402|gb|AAM52004.1| RE27528p [Drosophila melanogaster]
Length = 507
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 116/393 (29%), Positives = 191/393 (48%), Gaps = 64/393 (16%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117
+ +E I L +D+ + TGSGKT ++ALPI+ L R ALV+ PTR+LA Q+
Sbjct: 87 IQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLENPQRYF-ALVLTPTRELAFQI 145
Query: 118 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177
+ F A+ +G+ + VG + + +L K+P I++
Sbjct: 146 GEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPH---------------------III 184
Query: 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 237
ATPGRL+DH+ +GF L+ + YLV+DE DR+L ++ L +L++
Sbjct: 185 ATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKV------------- 231
Query: 238 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 297
LP RR + SAT+T+ KL + L P+ +
Sbjct: 232 --LPRE-------RRT----------------FLFSATMTKKVKKLQRASLKDPVKVEVS 266
Query: 298 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 357
+Y+ E+L+ L K K +YLV +L L ++F S+ +T + +L G
Sbjct: 267 -NKYQTVEQLQQSYLFIPVKYKDVYLVHILNELAGNSFMIFCSTCNNTVKTALMLRALGL 325
Query: 358 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417
I + G Q+ R L F+ +L+S+D +RG+D+ V+ VVN+D P + K
Sbjct: 326 AAIPL---HGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSK 382
Query: 418 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
YIHR GRTARAG+ G+ TL+ + +++ ++++
Sbjct: 383 DYIHRVGRTARAGRSGKAITLVSQYDIELYQRI 415
>gi|194878451|ref|XP_001974067.1| GG21281 [Drosophila erecta]
gi|190657254|gb|EDV54467.1| GG21281 [Drosophila erecta]
Length = 524
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 116/393 (29%), Positives = 191/393 (48%), Gaps = 64/393 (16%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117
+ +E I L +D+ + TGSGKT ++ALPI+ L R ALV+ PTR+LA Q+
Sbjct: 95 IQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLENPQRYF-ALVLTPTRELAFQI 153
Query: 118 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177
+ F A+ +G+ + VG + + +L K+P I++
Sbjct: 154 GEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPH---------------------III 192
Query: 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 237
ATPGRL+DH+ +GF L+ + YLV+DE DR+L ++ L +L++
Sbjct: 193 ATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKV------------- 239
Query: 238 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 297
LP RR + SAT+T+ KL + L P+ +
Sbjct: 240 --LPRE-------RRT----------------FLFSATMTKKVKKLQRASLKDPVKVEVS 274
Query: 298 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 357
+Y+ E+L+ L K K +YLV +L L ++F S+ +T + +L G
Sbjct: 275 -NKYQTVEQLQQSYLFIPVKYKDVYLVHILNELSGNSFMIFCSTCNNTVKTALMLRALGL 333
Query: 358 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417
I + G Q+ R L F+ +L+S+D +RG+D+ V+ VVN+D P + K
Sbjct: 334 AAIPL---HGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSK 390
Query: 418 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
YIHR GRTARAG+ G+ TL+ + +++ ++++
Sbjct: 391 DYIHRVGRTARAGRSGKAITLVSQYDIELYQRI 423
>gi|195580593|ref|XP_002080120.1| GD24302 [Drosophila simulans]
gi|194192129|gb|EDX05705.1| GD24302 [Drosophila simulans]
Length = 519
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 116/393 (29%), Positives = 191/393 (48%), Gaps = 64/393 (16%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117
+ +E I L +D+ + TGSGKT ++ALPI+ L R ALV+ PTR+LA Q+
Sbjct: 91 IQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLENPQRYF-ALVLTPTRELAFQI 149
Query: 118 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177
+ F A+ +G+ + VG + + +L K+P I++
Sbjct: 150 GEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPH---------------------III 188
Query: 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 237
ATPGRL+DH+ +GF L+ + YLV+DE DR+L ++ L +L++
Sbjct: 189 ATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKV------------- 235
Query: 238 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 297
LP RR + SAT+T+ KL + L P+ +
Sbjct: 236 --LPRE-------RRT----------------FLFSATMTKKVKKLQRASLKDPVKVEVS 270
Query: 298 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 357
+Y+ E+L+ L K K +YLV +L L ++F S+ +T + +L G
Sbjct: 271 -NKYQTVEQLQQSYLFIPVKYKDVYLVHILNELAGNSFMIFCSTCNNTVKTALMLRALGL 329
Query: 358 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417
I + G Q+ R L F+ +L+S+D +RG+D+ V+ VVN+D P + K
Sbjct: 330 AAIPL---HGQMSQNKRLAALNKFKTKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSK 386
Query: 418 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
YIHR GRTARAG+ G+ TL+ + +++ ++++
Sbjct: 387 DYIHRVGRTARAGRSGKAITLVSQYDIELYQRI 419
>gi|24585582|ref|NP_610090.1| CG9253 [Drosophila melanogaster]
gi|7298752|gb|AAF53963.1| CG9253 [Drosophila melanogaster]
gi|384475998|gb|AFH89832.1| FI20110p1 [Drosophila melanogaster]
Length = 507
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 116/393 (29%), Positives = 191/393 (48%), Gaps = 64/393 (16%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117
+ +E I L +D+ + TGSGKT ++ALPI+ L R ALV+ PTR+LA Q+
Sbjct: 87 IQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLENPQRYF-ALVLTPTRELAFQI 145
Query: 118 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177
+ F A+ +G+ + VG + + +L K+P I++
Sbjct: 146 GEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPH---------------------III 184
Query: 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 237
ATPGRL+DH+ +GF L+ + YLV+DE DR+L ++ L +L++
Sbjct: 185 ATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKV------------- 231
Query: 238 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 297
LP RR + SAT+T+ KL + L P+ +
Sbjct: 232 --LPRE-------RRT----------------FLFSATMTKKVKKLQRASLKDPVKVEVS 266
Query: 298 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 357
+Y+ E+L+ L K K +YLV +L L ++F S+ +T + +L G
Sbjct: 267 -NKYQTVEQLQQSYLFIPVKYKDVYLVHILNELAGNSFMIFCSTCNNTVKTALMLRALGL 325
Query: 358 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417
I + G Q+ R L F+ +L+S+D +RG+D+ V+ VVN+D P + K
Sbjct: 326 AAIPL---HGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSK 382
Query: 418 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
YIHR GRTARAG+ G+ TL+ + +++ ++++
Sbjct: 383 DYIHRVGRTARAGRSGKAITLVSQYDIELYQRI 415
>gi|195475963|ref|XP_002090252.1| GE12898 [Drosophila yakuba]
gi|194176353|gb|EDW89964.1| GE12898 [Drosophila yakuba]
Length = 522
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 116/393 (29%), Positives = 191/393 (48%), Gaps = 64/393 (16%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117
+ +E I L +D+ + TGSGKT ++ALPI+ L R ALV+ PTR+LA Q+
Sbjct: 94 IQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLENPQRYF-ALVLTPTRELAFQI 152
Query: 118 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177
+ F A+ +G+ + VG + + +L K+P I++
Sbjct: 153 GEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPH---------------------III 191
Query: 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 237
ATPGRL+DH+ +GF L+ + YLV+DE DR+L ++ L +L++
Sbjct: 192 ATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKV------------- 238
Query: 238 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 297
LP RR + SAT+T+ KL + L P+ +
Sbjct: 239 --LPRE-------RRT----------------FLFSATMTKKVKKLQRASLKDPVKVEVS 273
Query: 298 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 357
+Y+ E+L+ L K K +YLV +L L ++F S+ +T + +L G
Sbjct: 274 -NKYQTVEQLQQSYLFIPVKYKDVYLVHILNDLAGNSFMIFCSTCNNTVKTALMLRALGL 332
Query: 358 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417
I + G Q+ R L F+ +L+S+D +RG+D+ V+ VVN+D P + K
Sbjct: 333 AAIPL---HGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSK 389
Query: 418 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
YIHR GRTARAG+ G+ TL+ + +++ ++++
Sbjct: 390 DYIHRVGRTARAGRSGKAITLVTQYDIELYQRI 422
>gi|449551073|gb|EMD42037.1| hypothetical protein CERSUDRAFT_129370 [Ceriporiopsis subvermispora
B]
Length = 794
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 135/460 (29%), Positives = 217/460 (47%), Gaps = 91/460 (19%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR---- 97
+L +G ++ P+Q A TI L +D+ N+ TGSGKT ++ +P+++ L R
Sbjct: 222 SLTTLGFNTPTPIQAA----TIPVALLGKDVVGNAVTGSGKTAAFIIPMLERLMYRDRGK 277
Query: 98 ---AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
A RCL V++PTR+LA+Q +V +A + L VG S+ + + L RP
Sbjct: 278 KAAATRCL---VLVPTRELAVQCFEVGTKLAAHTDIRSCLVVGGLSLKAQEASLRTRP-- 332
Query: 155 EAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY 214
D+++ATPGRL+DH+ + FTLE L LV+DE DR+L
Sbjct: 333 -------------------DVVIATPGRLIDHLRNSPTFTLEALDILVLDEADRML---- 369
Query: 215 QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274
E+ FSD T + I+ C P R M+ SA
Sbjct: 370 ---------------EDGFSDELTEI---------IKSC---------PTSRQT-MLFSA 395
Query: 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE--------SKLKPLYLVAL 326
T+T ++L ++ L+ P+ L + P+R + L+ E + L AL
Sbjct: 396 TMTDTVDELVRMSLNKPVRL------FVDPKRTTARGLVQEFVRVRAGKEAERSALLAAL 449
Query: 327 LQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 386
+ K I+F S + H++ + + G +K E G Q R K L+ FR+G +
Sbjct: 450 CKRTFRTKSIIFFRSKKLAHQMRIVFSLLG---MKSDELHGDLSQEQRLKALQQFRDGTV 506
Query: 387 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 446
L+++D +RG+D++G+ V+NYD P + Y+HR GRTARAG+ GR TL+ + + K
Sbjct: 507 DYLMATDLASRGLDIKGIETVINYDMPGQLALYLHRVGRTARAGKKGRSVTLVGEADRKM 566
Query: 447 FKKLLQKADNDSCPIH-SIPSSLIESLRPVYKSVRGGISD 485
K ++ A + H +P+ I S++ IS+
Sbjct: 567 LKAAIKHAAGEDQVRHRQVPAEAIAKWSEKLASLKNEISE 606
>gi|388502288|gb|AFK39210.1| unknown [Lotus japonicus]
Length = 460
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 117/382 (30%), Positives = 193/382 (50%), Gaps = 62/382 (16%)
Query: 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128
+RD+ + TGSGKT ++ALPI+Q L R L ALV+ PTR+LA Q+ + F A+ ++
Sbjct: 47 KRDIIGLAETGSGKTGAFALPILQALLATPQR-LFALVLTPTRELAYQISEQFEALGSSI 105
Query: 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHIN 188
G+ + VG + + L K+P I++ATPGRL+DH+
Sbjct: 106 GVKCAVIVGGMDMMSQSIALAKKPH---------------------IVIATPGRLVDHLE 144
Query: 189 ATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLK 248
T+GF+L + YLV+DE DR+L ++ L +L++ S ST+L
Sbjct: 145 NTKGFSLRSIQYLVMDEADRILNMDFEVDLDKILKILPPS-----STRSTYL-------- 191
Query: 249 TIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLE 308
SAT+T+ KL + L P+ + + +Y ++L+
Sbjct: 192 -----------------------YSATMTKKVAKLQRASLRDPIKIEVSD-KYATVDKLQ 227
Query: 309 SYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL 368
L SK K +YLV++L + + IVF S+ +T RL L + G + + G
Sbjct: 228 QTYLFIPSKFKDVYLVSILNDMSGKSIIVFASTCTTTLRLALLTRNLGFTTVPL---HGQ 284
Query: 369 QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 428
Q+ R L F+ +L+++D +RG+D+ V+ V+NYD P + K YIHR GRTAR
Sbjct: 285 MSQTKRLGALNKFKGKARSILIATDVASRGLDIPHVDVVINYDIPNHSKDYIHRVGRTAR 344
Query: 429 AGQLGRCFTLLHKDEVKRFKKL 450
AG+ G+ T + + +++ ++++
Sbjct: 345 AGRSGKSITFVTQYDIELYQRI 366
>gi|170583206|ref|XP_001896476.1| ATP-dependent RNA helicase T26G10.1 in chromosome III [Brugia
malayi]
gi|158596304|gb|EDP34674.1| ATP-dependent RNA helicase T26G10.1 in chromosome III, putative
[Brugia malayi]
Length = 462
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 114/382 (29%), Positives = 187/382 (48%), Gaps = 64/382 (16%)
Query: 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128
+RD+ + TGSGKT ++A+PI+Q L + L ALV+ PTR+LA Q+ + F A+ ++
Sbjct: 61 KRDIIGLAETGSGKTAAFAIPILQALLETPQK-LFALVLTPTRELAFQIGEQFEALGASI 119
Query: 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHIN 188
G+ + + VG + L KRP ++VATPGRL+DH+
Sbjct: 120 GILIAVIVGGVDTVTQSLALAKRP---------------------HVIVATPGRLVDHLE 158
Query: 189 ATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLK 248
T+GF L L YLV+DE DR+L ++ L +L++ + T+L
Sbjct: 159 NTKGFNLRALKYLVMDEADRILNMDFEVELEKILKVIPKERR-------TYL-------- 203
Query: 249 TIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLE 308
SAT+T+ KL + L+ P+ + ++Y+ ++L+
Sbjct: 204 -----------------------YSATMTKKVAKLERASLNDPVRIEVS-SKYQTVDKLK 239
Query: 309 SYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL 368
Y + K K YL+ +L + + IVF S+ S + +L G + + G
Sbjct: 240 QYYIFIPYKYKEAYLIYILNEMAGQTAIVFCSTCASALKTALMLRKLGFGAVPL---HGQ 296
Query: 369 QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 428
Q+ R +L F+ VLV +D +RG+D+ V+ V+NYD P K Y+HR GRTAR
Sbjct: 297 MSQAKRLGSLNKFKSKASTVLVCTDVASRGLDIPHVDIVLNYDVPTQSKDYVHRVGRTAR 356
Query: 429 AGQLGRCFTLLHKDEVKRFKKL 450
AG+ G T + + +V+ ++K+
Sbjct: 357 AGRSGVAITFVTQYDVEIYQKI 378
>gi|405122110|gb|AFR96877.1| ATP-dependent rRNA helicase RRP3 [Cryptococcus neoformans var.
grubii H99]
Length = 484
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 136/455 (29%), Positives = 210/455 (46%), Gaps = 75/455 (16%)
Query: 2 EEAKKKSMPVLPWMRSPVDVSLFEDCP-LDHLPC-----LDPRLKVALQNMGISSLFPVQ 55
+E+ S P P+ RSP D P H + P L A +MG +Q
Sbjct: 7 QESATMSQPGSPF-RSPSPAPSNPDAPEASHNKTFADLGISPELCRACASMGFKKPSDIQ 65
Query: 56 VAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115
E I L +D+ + TGSGKT +++LPI+QTL + ALV+ PTR+LA
Sbjct: 66 A----EAIPHALEGKDIIGLAQTGSGKTAAFSLPILQTLWENP-QPFFALVLAPTRELAY 120
Query: 116 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDI 175
Q+ ++ +G+ + VG + + L KRP +
Sbjct: 121 QISQQVTSLGSGIGVRTAVLVGGMDMMSQSIALSKRPH---------------------V 159
Query: 176 LVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSD 235
+VATPGRLMDH+ T+GF+L+ L YLV+DE DRLL + + VL++ +
Sbjct: 160 IVATPGRLMDHLENTKGFSLKSLKYLVMDEADRLLDLDFGPIIDKVLKVIPKER------ 213
Query: 236 ASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLT 295
+T+L SAT+T KL + L+ P+ +
Sbjct: 214 -NTYL-------------------------------FSATMTTKVAKLQRASLNKPVRVE 241
Query: 296 TGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHF 355
++Y L + L+ K K YL+ L L I+FT +V + RL +L
Sbjct: 242 V-SSKYSTVSTLLQHYLLLPLKNKDAYLLYLANELSSSSMIIFTRTVADSQRLSIILRRL 300
Query: 356 GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAY 415
G I + G QS+R +L F+ G +LV++D +RG+D+ V+ V+NYD P
Sbjct: 301 GFPAIPLH---GQMTQSLRLASLNKFKSGGRSILVATDVASRGLDIPLVDLVINYDMPTN 357
Query: 416 IKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
K Y+HR GRTARAG+ G+ TL+ + +V+ +++
Sbjct: 358 SKDYVHRVGRTARAGRSGKSITLVTQYDVEILQRI 392
>gi|268563805|ref|XP_002638939.1| Hypothetical protein CBG22166 [Caenorhabditis briggsae]
Length = 753
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 131/476 (27%), Positives = 221/476 (46%), Gaps = 99/476 (20%)
Query: 34 CLDPRLKVALQNMGISSLFPVQVA---------VWQETIGPGLFERDLCINSPTGSGKTL 84
LD + V+ + M +S A + Q I L +D+C + TG+GKT
Sbjct: 136 SLDTNVNVSFEQMNLSRQILKACAGAGYSDPTPIQQACIPVALTGKDICACAATGTGKTA 195
Query: 85 SYALPIVQTLSNR--AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIA 142
++ LPI++ + R C R LV++PTR+LA+QV VF ++ + L V L G
Sbjct: 196 AFVLPILERMIYRPKGASCTRVLVLVPTRELAIQVFQVFRKLSTFIQLEVCLCAG----- 250
Query: 143 DEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTL------- 195
G+ ++ L+S D++VATPGRL+DH++ + F L
Sbjct: 251 --------------GLDLKAQEAA--LRSGPDVVVATPGRLIDHLHNSPSFNLASIEVFL 294
Query: 196 ---------------EHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFL 240
++L LV+DE DR+L EA++ + +++L ENR +
Sbjct: 295 SLEKEKFRNSEIQESKNLKVLVLDEADRMLEEAFRDQMNELIRLC---AENRQT------ 345
Query: 241 PSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE-- 298
++ SAT+T++ ++LA + L P+ + E
Sbjct: 346 -----------------------------LLFSATMTEEIDELASMSLKKPVKIFINENT 376
Query: 299 -TRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 357
T KL + + E+ + + + AL+ + IVF + + R+ LL G
Sbjct: 377 DTALKLRQEFIRIRAGRETDRESM-VAALVTRTFQTNTIVFVRTKKDCQRMQILLGLLG- 434
Query: 358 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417
IK+ + Q R ++L F++G+I VLVS+D +RG+D+EGV V+N + P IK
Sbjct: 435 --IKVGQMQSSLTQGQRIESLSKFKKGEIDVLVSTDLASRGLDIEGVQTVINMNMPKSIK 492
Query: 418 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLR 473
YIHR GRTARAG+ GR +L+ ++E K K+++ + + + ++E+ R
Sbjct: 493 QYIHRVGRTARAGKAGRSISLVGEEERKLLKEIVNSNADRTLKQRLVAPEVVEAYR 548
>gi|195155425|ref|XP_002018605.1| GL25891 [Drosophila persimilis]
gi|194114758|gb|EDW36801.1| GL25891 [Drosophila persimilis]
Length = 518
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 115/393 (29%), Positives = 191/393 (48%), Gaps = 64/393 (16%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117
+ +E I L +D+ + TGSGKT ++ALPI+ L R ALV+ PTR+LA Q+
Sbjct: 95 IQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLESPQRYF-ALVLTPTRELAFQI 153
Query: 118 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177
+ F A+ +G+ + VG + + +L K+P I++
Sbjct: 154 GEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPH---------------------III 192
Query: 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 237
ATPGRL+DH+ +GF L+ + YLV+DE DR+L ++ L +L++
Sbjct: 193 ATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKV------------- 239
Query: 238 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 297
LP RR + SAT+T+ KL + L P+ +
Sbjct: 240 --LPRE-------RRT----------------FLFSATMTKKVKKLQRASLKDPVKVEVS 274
Query: 298 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 357
+Y+ E+L+ L K K +YLV +L L ++F S+ +T + +L G
Sbjct: 275 -NKYQTVEQLQQSYLFIPVKYKDVYLVHILNELAGNSFMIFCSTCNNTVKTALMLRALGL 333
Query: 358 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417
I + G Q+ R L F+ +L+S+D +RG+D+ V+ VVN+D P + K
Sbjct: 334 AAIPL---HGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSK 390
Query: 418 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
YIHR GRTARAG+ G+ T++ + +++ ++++
Sbjct: 391 DYIHRVGRTARAGRSGKAITIVSQYDIELYQRI 423
>gi|125987477|ref|XP_001357501.1| GA21647 [Drosophila pseudoobscura pseudoobscura]
gi|54645833|gb|EAL34571.1| GA21647 [Drosophila pseudoobscura pseudoobscura]
Length = 518
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 115/393 (29%), Positives = 191/393 (48%), Gaps = 64/393 (16%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117
+ +E I L +D+ + TGSGKT ++ALPI+ L R ALV+ PTR+LA Q+
Sbjct: 95 IQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLESPQRYF-ALVLTPTRELAFQI 153
Query: 118 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177
+ F A+ +G+ + VG + + +L K+P I++
Sbjct: 154 GEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPH---------------------III 192
Query: 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 237
ATPGRL+DH+ +GF L+ + YLV+DE DR+L ++ L +L++
Sbjct: 193 ATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKV------------- 239
Query: 238 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 297
LP RR + SAT+T+ KL + L P+ +
Sbjct: 240 --LPRE-------RRT----------------FLFSATMTKKVKKLQRASLKDPVKVEVS 274
Query: 298 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 357
+Y+ E+L+ L K K +YLV +L L ++F S+ +T + +L G
Sbjct: 275 -NKYQTVEQLQQSYLFIPVKYKDVYLVHILNELAGNSFMIFCSTCNNTVKTALMLRALGL 333
Query: 358 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417
I + G Q+ R L F+ +L+S+D +RG+D+ V+ VVN+D P + K
Sbjct: 334 AAIPL---HGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSK 390
Query: 418 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
YIHR GRTARAG+ G+ T++ + +++ ++++
Sbjct: 391 DYIHRVGRTARAGRSGKAITIVSQYDIELYQRI 423
>gi|422293255|gb|EKU20555.1| dead deah box rna, partial [Nannochloropsis gaditana CCMP526]
Length = 414
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 112/394 (28%), Positives = 188/394 (47%), Gaps = 62/394 (15%)
Query: 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116
+ Q+ I L RD+ + TGSGKT ++ALP++Q L + R L A+V+ PTR+LA Q
Sbjct: 59 GIQQQAIPAALQGRDVIGLAETGSGKTGAFALPVLQALLAKPQR-LFAVVLAPTRELAFQ 117
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDIL 176
+ +VF A+ ++GL VG + + L ++P ++
Sbjct: 118 IHEVFEALGASIGLKSCCVVGGVDMMTQAIALARKPH---------------------VV 156
Query: 177 VATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDA 236
VATPGRL+DH+ T+GF + +LV+DE DR+L ++ + +L + + R
Sbjct: 157 VATPGRLVDHLENTKGFHIREARFLVLDEADRMLSMDFEEEINKILAIMPTGKHRR---- 212
Query: 237 STFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT 296
++ SAT+T KL + L P+ +
Sbjct: 213 --------------------------------TLLFSATMTSKVAKLQRASLTDPVKVEA 240
Query: 297 GETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG 356
+ ++ P L L +K K YL L + +VF ++ + RL LL + G
Sbjct: 241 SD-KFTTPRTLVQQYLFIPAKYKDCYLAYALNEAAGQTILVFVATCNNAQRLALLLRNLG 299
Query: 357 ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYI 416
I + G Q R L F+ G+ +L+++D +RG+D+ V+ V+N+D P++
Sbjct: 300 FGAICL---HGQMTQPKRLGALHKFKSGQRSILIATDVASRGLDIPAVDLVINFDIPSHG 356
Query: 417 KTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
K YIHR GRTARAG+ GR ++ + +V+ +++L
Sbjct: 357 KDYIHRVGRTARAGRAGRSIAMVTQYDVEVYQRL 390
>gi|388580865|gb|EIM21177.1| DEAD-domain-containing protein [Wallemia sebi CBS 633.66]
Length = 581
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 125/444 (28%), Positives = 206/444 (46%), Gaps = 71/444 (15%)
Query: 1 MEEAKKKSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQ 60
+ E + +P LP + E C +L D + A++ MG S + VQ
Sbjct: 30 ISEKEDTQLPELPETNTDYQDLTPEQCSFSNLDLTDG-TRSAIEEMGFSQMTEVQA---- 84
Query: 61 ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN---RAVRCLRALVVLPTRDLALQV 117
+TI P + RD+ + TGSGKTL++ +P ++ LS + A+V+ PTR+LALQ+
Sbjct: 85 KTIPPLMAGRDVLGAAHTGSGKTLAFLIPAIEMLSRLHFKPRNGTGAIVISPTRELALQI 144
Query: 118 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177
V I + G+ +G ++ K EA +LQ V++++
Sbjct: 145 FGVAKDIMKNHNQTFGIIMGGAN-----------RKAEA----------DKLQKGVNLII 183
Query: 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 237
ATPGRL+DH+ T+GF ++ L++DE DR+L ++ + ++++ ++N
Sbjct: 184 ATPGRLLDHLQNTKGFVFSNMKSLIIDEADRILEIGFEEEMRQIVKILPTENRQ------ 237
Query: 238 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH-PLFLTT 296
M+ SAT T LA++ L PL++
Sbjct: 238 -------------------------------TMLFSATQTTKVTDLARVSLRQGPLYINV 266
Query: 297 GETRYKLP-ERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHF 355
E R E+LE ++CES ++ L L L+ ++K IVF SS S LLN+
Sbjct: 267 HEERSAATNEQLEQGYVVCESDMRFLLLFTFLKKNLKKKVIVFFSSCNSVKYHGELLNY- 325
Query: 356 GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAY 415
+ I + + G Q+Q R+ T F +L+ +D RG+D+ V+ ++ +D P
Sbjct: 326 --IDIPVLDLHGKQKQQKRTNTFFEFCNAPNGILLCTDVAARGLDIPAVDWIIQFDPPDD 383
Query: 416 IKTYIHRAGRTARAGQLGRCFTLL 439
+ YIHR GRTARAG+ G+ L
Sbjct: 384 PRDYIHRVGRTARAGKAGKSLLFL 407
>gi|242782113|ref|XP_002479938.1| ATP-dependent RNA helicase , putative [Talaromyces stipitatus ATCC
10500]
gi|218720085|gb|EED19504.1| ATP-dependent RNA helicase , putative [Talaromyces stipitatus ATCC
10500]
Length = 478
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 130/422 (30%), Positives = 197/422 (46%), Gaps = 70/422 (16%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P+L A +G + A+ E I L RDL + TGSGKT ++ALPI+Q L
Sbjct: 59 LIPQLCEACDTLG----YKAPTAIQTEAIPLALQNRDLIGLAETGSGKTAAFALPILQAL 114
Query: 95 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
++ + LV+ PTR+LA Q+ + F A+ + + + VG + + + KRP
Sbjct: 115 MDKP-QPFFGLVLAPTRELAYQISEAFEALGSTISVRSVVLVGGMDMVPQAIAIGKRPH- 172
Query: 155 EAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY 214
I+VATPGRL+DH+ T+GF+L L YLV+DE DRLL +
Sbjct: 173 --------------------IIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDMDF 212
Query: 215 QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274
+ +L++ E R TFL SA
Sbjct: 213 GPIIDKILKVL--PRERR-----TFL-------------------------------FSA 234
Query: 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEK 334
T++ L + L +PL ++ +Y+ L Y L K K ++L+ LL +
Sbjct: 235 TMSSKVEGLQRASLSNPLRVSVSSNKYQTVSTLLQYYLFIPHKHKDVHLIWLLNEHVGQS 294
Query: 335 CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394
I+FT +V T RL L G I + G QS R L FR +L+++D
Sbjct: 295 VIIFTRTVHETMRLTILARALGFGAIALH---GQLSQSARLGALGKFRSRSRDILIATDV 351
Query: 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK---RFKKLL 451
RG+D+ V+ V+NYD A KT++HR GRTARAG+ G+ +L+ + +V+ R +K L
Sbjct: 352 AARGLDIPSVDLVLNYDLAADSKTHVHRIGRTARAGKSGKAISLVTQYDVEVWLRIEKAL 411
Query: 452 QK 453
+
Sbjct: 412 DR 413
>gi|395334307|gb|EJF66683.1| DEAD-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 773
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 132/455 (29%), Positives = 215/455 (47%), Gaps = 80/455 (17%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR---- 97
+L +G ++ P+Q A TI L +D+ N+ TGSGKT ++ +P+++ L R
Sbjct: 201 SLTTLGFTTPTPIQAA----TIPVALLGKDVVGNAVTGSGKTAAFIIPMLERLMYRDRGK 256
Query: 98 ---AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
A RCL V++PTR+L +Q +V +A + L VG SI + + L RP
Sbjct: 257 KAAATRCL---VLVPTRELGVQCFEVGTKLAAHTDIRFALVVGGLSIKAQEANLRTRP-- 311
Query: 155 EAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY 214
D+++ATPGRL+DHI + FTL+ L LV+DE DR+L
Sbjct: 312 -------------------DVVIATPGRLIDHIRNSPTFTLDALDILVLDEADRML---- 348
Query: 215 QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274
E+ F+D T + I+ C P R M+ SA
Sbjct: 349 ---------------EDGFADELTEI---------IKSC---------PTSRQT-MLFSA 374
Query: 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL--KPLYLVALLQSLGE 332
T+T ++L ++ L+ P+ L R L+ + + K + LVAL + +
Sbjct: 375 TMTDSVDELVRMSLNKPVRLFVDPKRATARGLLQEFVRVRAGKEAERSALLVALCKRTFK 434
Query: 333 EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS 392
+ I+F S + H++ + F L +K E G Q R K L+ FR+G + L+++
Sbjct: 435 SRVIIFFRSKKLAHQMRIV---FRLLDMKCDELHGDLSQEQRLKALQQFRDGHVDYLMAT 491
Query: 393 DAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 452
D +RG+D++G+ V+NYD P + Y+HR GRTARAG+ GR TL+ + + K K ++
Sbjct: 492 DLASRGLDIKGIETVINYDMPGQLAQYLHRVGRTARAGKKGRSVTLVGEADRKMLKAAIK 551
Query: 453 KAD--NDSCPIHSIPSSLIESLRPVYKSVRGGISD 485
+ D +P ++ S++ IS+
Sbjct: 552 HSSGGEDQIRHRQVPQEVVSKWAQKLDSLKQEISE 586
>gi|143462274|sp|Q0CIQ3.2|RRP3_ASPTN RecName: Full=ATP-dependent rRNA helicase rrp3
Length = 445
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 126/404 (31%), Positives = 190/404 (47%), Gaps = 69/404 (17%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101
A + +G ++ P+Q + I L RDL + TGSGKT ++ LP++Q L ++ +
Sbjct: 42 ACEELGYTAPTPIQ----ERCIPIALEGRDLIGLAETGSGKTAAFVLPMLQALMDKP-QQ 96
Query: 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD 161
+L++ PTR+LA Q+ A+ + + L +G + + L K+P
Sbjct: 97 FHSLILAPTRELAQQIAHTVEALGARISVRCTLLIGGMDMISQAIALGKKPH-------- 148
Query: 162 PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 221
++VATPGRL+DH+ T+GF+L L YLV+DE DRLL + L +
Sbjct: 149 -------------VIVATPGRLLDHLENTKGFSLRTLKYLVLDEADRLLDLDFGPILDKL 195
Query: 222 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 281
L+L LP K K Y + SAT++
Sbjct: 196 LRL---------------LP------------------KRKTY------LFSATMSSKVE 216
Query: 282 KLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 341
L + L P+ ++ + L+SY L K K YLV LL + I+FT +
Sbjct: 217 SLQRASLSDPVRVSVSTKNQTASKLLQSY-LFIPHKFKDFYLVYLLNERAGQMGIIFTRT 275
Query: 342 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 401
V T RL +L + G I I G QS R +L FR +L+++D RG+D+
Sbjct: 276 VHETQRLSIMLRNLGFPAIPIH---GQLSQSARLASLNKFRARSRNLLIATDVAARGLDI 332
Query: 402 EGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 445
V+ V+NYD P KTYIHR GRTARAG+ G F+ + + EV+
Sbjct: 333 PAVDYVLNYDLPQDSKTYIHRVGRTARAGKSGIAFSFVTQYEVE 376
>gi|169768960|ref|XP_001818950.1| ATP-dependent rRNA helicase RRP3 [Aspergillus oryzae RIB40]
gi|91207780|sp|Q2UNB7.1|RRP3_ASPOR RecName: Full=ATP-dependent rRNA helicase rrp3
gi|83766808|dbj|BAE56948.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 472
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 121/394 (30%), Positives = 180/394 (45%), Gaps = 63/394 (15%)
Query: 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111
+ A+ E I L RDL + TGSGKT ++ALPI+Q L ++ LV+ PTR
Sbjct: 72 YKAPTAIQAEAIPLALQGRDLIGLAETGSGKTAAFALPILQALMDKPSSFF-GLVLAPTR 130
Query: 112 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 171
+LA Q+ F + + + + VG + + L K+P
Sbjct: 131 ELAYQISQAFEGLGSTISVRSTVLVGGMDMVSQSIALGKKPH------------------ 172
Query: 172 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN 231
I+VATPGRL+DH+ T+GF+L +L YLV+DE DRLL + L +L++
Sbjct: 173 ---IIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDMDFGPILDKILKV------- 222
Query: 232 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 291
LP RR + SAT++ L + L +P
Sbjct: 223 --------LPRE-------RRT----------------YLFSATMSSKVESLQRASLQNP 251
Query: 292 LFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTL 351
L + ++++ L+ + K K LYLV LL + CI+F +V T RL
Sbjct: 252 LRVAVSSSKFQTVSTLQQSYIFIPHKHKDLYLVYLLNEFVGQSCIIFCRTVHETQRLSFF 311
Query: 352 LNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD 411
L G I + G QS R L FR +LV++D RG+D+ V+ V+N+D
Sbjct: 312 LRLLGFGAIPLH---GQLSQSARLGALGKFRSRSRDILVATDVAARGLDIPSVDVVLNFD 368
Query: 412 KPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 445
P KT+IHR GRTARAG+ G + + +V+
Sbjct: 369 LPGDSKTFIHRIGRTARAGKSGVAISFATQYDVE 402
>gi|402083740|gb|EJT78758.1| ATP-dependent rRNA helicase RRP3 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 485
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 133/434 (30%), Positives = 201/434 (46%), Gaps = 73/434 (16%)
Query: 32 LPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIV 91
L +DP L A + +G P+Q + I L RD+ + TGSGKT ++ALPI+
Sbjct: 62 LGIVDP-LCEACEALGYKQPTPIQT----QAIPLALQGRDVIGIAETGSGKTAAFALPIL 116
Query: 92 QTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
Q+L ++ + L LV+ PTR+LA Q+ F A+ + L + VG + + L K+
Sbjct: 117 QSLLDKP-QPLFGLVLAPTRELAAQIGQAFEALGSLISLRCAVVVGGLDMVSQSIALGKK 175
Query: 152 PKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 211
P ++VATPGRL+DH+ T+GF+L L YLV+DE DRLL
Sbjct: 176 PH---------------------VVVATPGRLLDHLEKTKGFSLRSLKYLVMDEADRLLD 214
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
+ L +L+ FLP RR +
Sbjct: 215 LDFGPILDKILK---------------FLPRE-------RRT----------------YL 236
Query: 272 LSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLG 331
SAT++ L + L PL ++ R K L LI K +YL+ L+
Sbjct: 237 FSATMSSKVESLQRASLRDPLRVSVSSKREKTVATLLQNPLIIPHMHKDVYLIYLVNEFA 296
Query: 332 EEKCIVFTSSVESTHRLCTLLN--HFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 389
+ I+FT +V RL LL FG + + G QS+R L F+ +L
Sbjct: 297 GQTTIIFTRTVNEAQRLSILLRTLSFGAIPL-----HGQLSQSMRLGALNKFKAKSRDIL 351
Query: 390 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKK 449
V++D RG+D+ V+ V+NYD P TYIHR GRTARAG+ GR +++ + +V+ + +
Sbjct: 352 VATDVAARGLDIPEVDLVINYDLPGDSMTYIHRVGRTARAGRSGRAISIVTQYDVELWMR 411
Query: 450 LLQKA-DNDSCPIH 462
+ + A D P +
Sbjct: 412 IEKAALDGRKLPTY 425
>gi|238501386|ref|XP_002381927.1| ATP-dependent RNA helicase , putative [Aspergillus flavus NRRL3357]
gi|220692164|gb|EED48511.1| ATP-dependent RNA helicase , putative [Aspergillus flavus NRRL3357]
gi|391863856|gb|EIT73155.1| ATP-dependent RNA helicase [Aspergillus oryzae 3.042]
Length = 472
Score = 168 bits (425), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 121/394 (30%), Positives = 180/394 (45%), Gaps = 63/394 (15%)
Query: 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111
+ A+ E I L RDL + TGSGKT ++ALPI+Q L ++ LV+ PTR
Sbjct: 72 YKAPTAIQAEAIPLALQGRDLIGLAETGSGKTAAFALPILQALMDKPSSFF-GLVLAPTR 130
Query: 112 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 171
+LA Q+ F + + + + VG + + L K+P
Sbjct: 131 ELAYQISQAFEGLGSTISVRSTVLVGGMDMVSQSIALGKKPH------------------ 172
Query: 172 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN 231
I+VATPGRL+DH+ T+GF+L +L YLV+DE DRLL + L +L++
Sbjct: 173 ---IIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDMDFGPILDKILKV------- 222
Query: 232 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 291
LP RR + SAT++ L + L +P
Sbjct: 223 --------LPRE-------RRT----------------YLFSATMSSKVESLQRASLQNP 251
Query: 292 LFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTL 351
L + ++++ L+ + K K LYLV LL + CI+F +V T RL
Sbjct: 252 LRVAVSSSKFQTVSTLQQSYIFIPHKHKDLYLVYLLNEFVGQSCIIFCRTVHETQRLSFF 311
Query: 352 LNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD 411
L G I + G QS R L FR +LV++D RG+D+ V+ V+N+D
Sbjct: 312 LRLLGFGAIPLH---GQLSQSARLGALGKFRSRSRDILVATDVAARGLDIPSVDVVLNFD 368
Query: 412 KPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 445
P KT+IHR GRTARAG+ G + + +V+
Sbjct: 369 LPGDSKTFIHRIGRTARAGKSGVAISFATQYDVE 402
>gi|392571512|gb|EIW64684.1| DEAD-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 772
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 126/438 (28%), Positives = 212/438 (48%), Gaps = 79/438 (18%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR---- 97
++ +G ++ P+Q A TI L +D+ N+ TGSGKT ++ +P+++ L R
Sbjct: 197 SITTLGFTTPTPIQAA----TIPVALLGKDVVGNAVTGSGKTAAFIIPMLERLMYRDRGK 252
Query: 98 ---AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
A RCL ++ PTR+LA+Q +V + +A + L VG S+ + + L RP
Sbjct: 253 KAAATRCL---ILAPTRELAVQCYEVGSKLAAHTDIRFALVVGGLSVKAQETNLRTRP-- 307
Query: 155 EAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY 214
D+++ATPGRL+DH+ + FTL+ L LV+DE DR+L
Sbjct: 308 -------------------DVVIATPGRLIDHLRNSPTFTLDALDILVLDEADRML---- 344
Query: 215 QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274
E+ FSD T + I C P R M+ SA
Sbjct: 345 ---------------EDGFSDELTEI---------ITSC---------PTSRQT-MLFSA 370
Query: 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL--KPLYLVALLQSLGE 332
T+T ++L ++ L+ P+ L R L+ + + K + LVAL + +
Sbjct: 371 TMTDSVDELVRMSLNKPVRLFVDPKRSTARGLLQEFVRVRAGKETERSALLVALCKRSFK 430
Query: 333 EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS 392
+ I+F S + H++ + + G +K E G Q R K L+ FR+G + L+++
Sbjct: 431 ARAIIFYRSKKLAHQMRIMFSLLG---MKCDELHGDLTQEQRLKALQQFRDGHVDYLMAT 487
Query: 393 DAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 452
D +RG+D++G+ V+NYD P + Y+HR GRTARAG+ GR TL+ + + K K ++
Sbjct: 488 DLASRGLDIKGIETVINYDMPGTLSQYLHRVGRTARAGKKGRSVTLVGEADRKLLKAAIK 547
Query: 453 KADNDSCPIH-SIPSSLI 469
+ ++ H +P+ ++
Sbjct: 548 HSSSEDQVRHRQVPTEVL 565
>gi|365984991|ref|XP_003669328.1| hypothetical protein NDAI_0C04250 [Naumovozyma dairenensis CBS 421]
gi|343768096|emb|CCD24085.1| hypothetical protein NDAI_0C04250 [Naumovozyma dairenensis CBS 421]
Length = 504
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 126/452 (27%), Positives = 215/452 (47%), Gaps = 74/452 (16%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P L A +N+ S P+Q ++I P L D+ + TGSGKT ++A+PI+ +L
Sbjct: 91 LVPELIQACKNLNYSKPTPIQ----SKSIPPALKGHDIIGLAQTGSGKTAAFAIPILNSL 146
Query: 95 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
+ + A ++ PTR+LA Q+K+ F ++ +G+ VG ++ D+ +L+++P
Sbjct: 147 WHDQ-QPYYACILAPTRELAQQIKETFDSLGSLMGVRSVCIVGGMNMMDQARDLMRKPH- 204
Query: 155 EAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY 214
+++ATPGRLMDH+ T+GF+L L YLV+DE DRLL +
Sbjct: 205 --------------------VIIATPGRLMDHLENTKGFSLRKLKYLVMDEADRLLDMEF 244
Query: 215 QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274
L +L++ + +T+L SA
Sbjct: 245 GPVLDRILKILPTQGR------TTYL-------------------------------FSA 267
Query: 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEK 334
T+T +KL + L +P+ +Y+ + L ++ LK +L+ LL +
Sbjct: 268 TMTSKIDKLQRASLTNPVKCAVS-NKYQTVDTLVQTLIVVPGGLKNTFLIYLLNEYIGKS 326
Query: 335 CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394
I+FT + + R+ L N L G Q+ R+ L F+ G+ +LV++D
Sbjct: 327 TIIFTRTKANAERISGLCNL---LEFNATALHGDLNQNQRTGALDLFKAGRKTILVATDV 383
Query: 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK---RFKKLL 451
RG+D+ V+ V+NYD P K+YIHR GRTARAG+ G+ +L+ + +++ R +++L
Sbjct: 384 AARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEEVL 443
Query: 452 QKADNDSCPIHSIPSSLIESLRPVYKSVRGGI 483
K P ++ +I +LR G +
Sbjct: 444 GK----KLPKETVDKEMILTLRDSVDKADGEV 471
>gi|170579262|ref|XP_001894751.1| DEAD/DEAH box helicase family protein [Brugia malayi]
gi|158598525|gb|EDP36400.1| DEAD/DEAH box helicase family protein [Brugia malayi]
Length = 527
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 144/450 (32%), Positives = 215/450 (47%), Gaps = 72/450 (16%)
Query: 25 EDCP-LDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGP----GLFE-RDLCINSPT 78
E C LD + L P L ++ + +PVQ V + +F RDL I+SPT
Sbjct: 68 ESCAELDFVKGLHPLLACRVRE-HLRQWYPVQRTVLPHLVAATNTCSIFPPRDLVISSPT 126
Query: 79 GSGKTLSYALPIVQTL-SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVG 137
GSGKTL Y +PI+ L + + CL AL+V+P ++L Q++ F V L G
Sbjct: 127 GSGKTLCYVIPILNALRACTMMDCLFALIVVPVQNLVDQIEKEFKKYNVFNVCIVSLC-G 185
Query: 138 QSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHI---NATRGFT 194
+ E Q+L+SA +I++ATPGRLM+HI + FT
Sbjct: 186 SHDVNVE---------------------RQQLESA-NIVIATPGRLMEHITDLDFPADFT 223
Query: 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCG 254
HL YLVVDE DR+ A WL L+ + N N + + S
Sbjct: 224 --HLRYLVVDEADRMSHTARIEWLNN-LEAAANYNHNCVTIDDLYNASF----------- 269
Query: 255 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP-LF-------LTTGETRYK---L 303
L K++LSATL+ D L + L HP LF + T E +
Sbjct: 270 ------------LQKILLSATLSLDVEDLHEWRLRHPCLFKAVKEDVVVTNELSLNSVII 317
Query: 304 PERLESYKLICESKLKPLYLVALLQSLGE-EKCIVFTSSVESTHRLCTLLNHFGELRIKI 362
P L+ ++C++K KPL ++ +K ++F +S +++RL LL + ++
Sbjct: 318 PNSLKIEYIVCDTKFKPLVTHERIEGRKSWKKILIFVNSKLASYRLAVLLKMLSVGKYQV 377
Query: 363 KEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHR 422
+E S + R K L FR+G +VL+SSD ++RG+DV ++ V+NYD+P K ++HR
Sbjct: 378 EELSSNLFGNRRQKVLARFRKGTTRVLISSDVLSRGIDVMDIDVVINYDRPLNEKLFVHR 437
Query: 423 AGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 452
GRTAR G+ GR L+ E K F+ LQ
Sbjct: 438 VGRTARCGKKGRAIFLITAKEKKDFQATLQ 467
>gi|119618949|gb|EAW98543.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 [Homo sapiens]
Length = 291
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 92/229 (40%), Positives = 132/229 (57%), Gaps = 16/229 (6%)
Query: 263 PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG--------------ETRYKLPERLE 308
P L K++ SATLTQ+P KL QL LH P +TG +Y P L
Sbjct: 46 PQMPLQKLLFSATLTQNPEKLQQLGLHQPRLFSTGLAHRGLEDTDGDGDSGKYAFPVGLT 105
Query: 309 SYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL 368
+ + C KPL ++ L+ +G + + FT+S E++HRL L+ FG + + E+S
Sbjct: 106 HHYVPCSLSSKPLVVLHLVLEMGFSRVLCFTNSRENSHRLFLLVQAFGG--VDVAEFSSR 163
Query: 369 QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 428
R LK F +GKIQ+L+S+DA RG+DV+GV VVNYD P Y++TY+HR GRTAR
Sbjct: 164 YGPGQRRMILKQFEQGKIQLLISTDATARGIDVQGVELVVNYDAPQYLRTYVHRVGRTAR 223
Query: 429 AGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYK 477
AG+ G+ FTLL K + +RF ++L +A H + S L++ L P Y+
Sbjct: 224 AGKTGQAFTLLLKVQERRFLRMLTEAGAPELQRHELSSKLLQPLVPRYE 272
>gi|119494337|ref|XP_001264064.1| DEAD/DEAH box helicase, putative [Neosartorya fischeri NRRL 181]
gi|119412226|gb|EAW22167.1| DEAD/DEAH box helicase, putative [Neosartorya fischeri NRRL 181]
Length = 863
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 129/388 (33%), Positives = 183/388 (47%), Gaps = 83/388 (21%)
Query: 2 EEAKKKSMPVLP-WMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQ 60
EE +K S LP W+ +PV S + L +D L L++ G F VQ V
Sbjct: 225 EETEKPSYSSLPAWLANPVRESASKRARFSEL-GIDSNLLRVLEDHGYKEAFAVQSTVIP 283
Query: 61 ETI-GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKD 119
+ GP DLCI++ TGSGKTLSY LP+V L +R L+V+PTR+L Q ++
Sbjct: 284 LLLQGPRRHPGDLCISAATGSGKTLSYVLPLVTALKPTPAPRMRGLIVVPTRELVKQARE 343
Query: 120 VFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPE---------------- 163
A GL +G AVG +I DE +R + CY PE
Sbjct: 344 ACELCATGSGLRIGSAVGNVAIKDE-----QRTLMRVDQCYGPELSKQRQTVDLTGEDWT 398
Query: 164 -------------------DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVD 204
+Q + +DIL+ TPGRL+DH+ T+GFTLEHL +LV+D
Sbjct: 399 NFNLMNYLAETSDLSESLPGYVQRAEPNIDILICTPGRLVDHLRYTKGFTLEHLEWLVID 458
Query: 205 ETDRLLREAYQAWLPTVLQL--TRSDNENRFSDASTFLPSAFGSL-KTIRRCGVERGFKD 261
E DRLL E++Q W+ V+ R D P FGS K + + G+ ++
Sbjct: 459 EADRLLNESFQEWVDVVMNSLDARKD------------PKTFGSSGKFMAQLGLPIQSRE 506
Query: 262 KPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL-------------------TTGETRYK 302
PR K++LSAT+T+D +KL L L +P + TT + ++
Sbjct: 507 ---PR--KVILSATMTRDISKLNSLRLANPKLVIIGSAEPTATEEAEHDGVPTTSDEQFT 561
Query: 303 LPERLESYKL-ICESKLKPLYLVALLQS 329
LP L+ Y + + + KPLYL+ LLQS
Sbjct: 562 LPSTLKEYSVSVGDGSQKPLYLLQLLQS 589
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 73/130 (56%), Gaps = 15/130 (11%)
Query: 335 CIVFTSSVESTHRLC--------TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 386
++FT S ES RL +L NH G + IK + S KTL A+R GKI
Sbjct: 692 VLIFTKSSESASRLSRLISLLDPSLANHIGTI---IKS----NKSSASRKTLTAYRRGKI 744
Query: 387 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 446
++V++D +RG+D+E + +VVNYD P + TY+HR GRTARAG+ G +TL+ E
Sbjct: 745 SIIVATDRASRGLDLESLTHVVNYDVPPSVTTYVHRVGRTARAGKEGSAWTLVAHREGHW 804
Query: 447 FKKLLQKADN 456
F + K +
Sbjct: 805 FVNEISKGSD 814
>gi|321262460|ref|XP_003195949.1| ATP-dependent RNA helicase [Cryptococcus gattii WM276]
gi|317462423|gb|ADV24162.1| ATP-dependent RNA helicase, putative [Cryptococcus gattii WM276]
Length = 484
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 126/416 (30%), Positives = 197/416 (47%), Gaps = 68/416 (16%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
+ P L A +MG +Q E I L +D+ + TGSGKT +++LPI+QTL
Sbjct: 45 ISPELCRACASMGFKKPSDIQA----EAIPHALEGKDIIGLAQTGSGKTAAFSLPILQTL 100
Query: 95 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
+ ALV+ PTR+LA Q+ ++ +G+ + VG + + L KRP
Sbjct: 101 WENP-QPFFALVLAPTRELAYQISQQITSLGSGIGVRTAVLVGGMDMMSQSIALSKRPH- 158
Query: 155 EAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY 214
++VATPGRLMDH+ T+GF+L+ L YLV+DE DRLL +
Sbjct: 159 --------------------VIVATPGRLMDHLENTKGFSLKSLKYLVMDEADRLLDLDF 198
Query: 215 QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274
+ VL++ + +T+L SA
Sbjct: 199 GPIIDKVLKVIPKER-------NTYL-------------------------------FSA 220
Query: 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEK 334
T+T KL + L+ P+ + ++Y L + L+ K K YL+ L L
Sbjct: 221 TMTTKVAKLQRASLNKPVRVEV-SSKYSTVSTLLQHYLLLPLKNKDSYLLYLANELSSSS 279
Query: 335 CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394
I+FT +V + RL +L G I + G QS+R +L F+ G +LV++D
Sbjct: 280 MIIFTRTVADSQRLSIILRRLGFPAIPLH---GQMTQSLRLASLNKFKSGGRSILVATDV 336
Query: 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
+RG+D+ V+ V+NYD P K Y+HR GRTARAG+ G+ TL+ + +V+ +++
Sbjct: 337 ASRGLDIPLVDLVINYDMPTNSKDYVHRVGRTARAGRSGKSITLVTQYDVEILQRI 392
>gi|207344698|gb|EDZ71756.1| YHR065Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 496
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 124/422 (29%), Positives = 198/422 (46%), Gaps = 70/422 (16%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P L A +N+ S P+Q + I P L D+ + TGSGKT ++A+PI+ L
Sbjct: 130 LVPELIQACKNLNYSKPTPIQ----SKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRL 185
Query: 95 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
+ A ++ PTR+LA Q+K+ F ++ +G+ VG ++ D+ +L+++P
Sbjct: 186 WHDQ-EPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPH- 243
Query: 155 EAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY 214
I++ATPGRLMDH+ T+GF+L L +LV+DE DRLL +
Sbjct: 244 --------------------IIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEF 283
Query: 215 QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274
L +L++ P + SA
Sbjct: 284 GPVLDRILKII-------------------------------------PTQERTTYLFSA 306
Query: 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEK 334
T+T +KL + L +P+ +Y+ + L ++ LK YL+ LL +
Sbjct: 307 TMTSKIDKLQRASLTNPVKCAVS-NKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFIGKT 365
Query: 335 CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394
I+FT + + RL L N L G Q+ R L F+ GK +LV++D
Sbjct: 366 MIIFTRTKANAERLSGLCNL---LEFSATALHGDLNQNQRMGALDLFKAGKRSILVATDV 422
Query: 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK---RFKKLL 451
RG+D+ V+ VVNYD P K+YIHR GRTARAG+ G+ +L+ + +++ R +++L
Sbjct: 423 AARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEEVL 482
Query: 452 QK 453
K
Sbjct: 483 GK 484
>gi|402590562|gb|EJW84492.1| DEAD box ATP-dependent RNA helicase [Wuchereria bancrofti]
Length = 462
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 114/382 (29%), Positives = 186/382 (48%), Gaps = 64/382 (16%)
Query: 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128
+RD+ + TGSGKT ++A+PI+Q L + L ALV+ PTR+LA Q+ + F A+ ++
Sbjct: 61 KRDIIGLAETGSGKTAAFAIPILQALLETPQK-LFALVLTPTRELAFQIGEQFEALGASI 119
Query: 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHIN 188
G+ + + VG + L KRP ++VATPGRL+DH+
Sbjct: 120 GILIAVIVGGIDTVTQSLALAKRP---------------------HVIVATPGRLVDHLE 158
Query: 189 ATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLK 248
T+GF L L YLV+DE DR+L ++ L +L++ + T+L
Sbjct: 159 NTKGFNLRALKYLVMDEADRILNMDFEVELEKILKVIPKERR-------TYL-------- 203
Query: 249 TIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLE 308
SAT+T+ KL + L P+ + ++Y+ ++L+
Sbjct: 204 -----------------------YSATMTKKVAKLERASLVDPVRIEVS-SKYQTVDKLK 239
Query: 309 SYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL 368
Y + K K YL+ +L + + IVF S+ S + +L G + + G
Sbjct: 240 QYYIFIPYKYKEAYLIYILNEMAGQTAIVFCSTCASALKTALMLRKLGFGAVPL---HGQ 296
Query: 369 QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 428
Q+ R +L F+ VLV +D +RG+D+ V+ V+NYD P K Y+HR GRTAR
Sbjct: 297 MSQAKRLGSLNKFKSKASTVLVCTDVASRGLDIPHVDIVLNYDVPTQSKDYVHRVGRTAR 356
Query: 429 AGQLGRCFTLLHKDEVKRFKKL 450
AG+ G T + + +V+ ++K+
Sbjct: 357 AGRSGVAVTFVTQYDVEIYQKI 378
>gi|58271466|ref|XP_572889.1| ATP-dependent RNA helicase [Cryptococcus neoformans var. neoformans
JEC21]
gi|134115044|ref|XP_773820.1| hypothetical protein CNBH2720 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338819312|sp|P0CR01.1|RRP3_CRYNB RecName: Full=ATP-dependent rRNA helicase RRP3
gi|338819313|sp|P0CR00.1|RRP3_CRYNJ RecName: Full=ATP-dependent rRNA helicase RRP3
gi|50256448|gb|EAL19173.1| hypothetical protein CNBH2720 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229148|gb|AAW45582.1| ATP-dependent RNA helicase, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 484
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 125/416 (30%), Positives = 197/416 (47%), Gaps = 68/416 (16%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
+ P L A +MG +Q E I L +D+ + TGSGKT +++LPI+QTL
Sbjct: 45 ISPELCRACASMGFKKPSDIQA----EAIPHALEGKDIIGLAQTGSGKTAAFSLPILQTL 100
Query: 95 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
+ ALV+ PTR+LA Q+ ++ +G+ + VG + + L KRP
Sbjct: 101 WENP-QPFFALVLAPTRELAYQISQQVTSLGSGIGVRTAVLVGGMDMMSQSIALSKRPH- 158
Query: 155 EAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY 214
I+VATPGRLMDH+ T+GF+L+ L YLV+DE DRLL +
Sbjct: 159 --------------------IIVATPGRLMDHLENTKGFSLKSLKYLVMDEADRLLDLDF 198
Query: 215 QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274
+ +L++ + +T+L SA
Sbjct: 199 GPIIDKILKVIPKER-------NTYL-------------------------------FSA 220
Query: 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEK 334
T+T KL + L+ P+ + ++Y L + L+ K K YL+ L L
Sbjct: 221 TMTTKVAKLQRASLNKPVRVEV-SSKYSTVSTLLQHYLLLPLKNKDAYLLYLANELSSSS 279
Query: 335 CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394
++FT +V + RL +L G I + G QS+R +L F+ G +LV++D
Sbjct: 280 MMIFTRTVADSQRLSIILRRLGFPAIPLH---GQMTQSLRLASLNKFKSGGRSILVATDV 336
Query: 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
+RG+D+ V+ V+NYD P K Y+HR GRTARAG+ G+ TL+ + +V+ +++
Sbjct: 337 ASRGLDIPLVDLVINYDMPTNSKDYVHRVGRTARAGRSGKSITLVTQYDVEILQRI 392
>gi|331219074|ref|XP_003322214.1| hypothetical protein PGTG_03751 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309301204|gb|EFP77795.1| hypothetical protein PGTG_03751 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 785
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 133/443 (30%), Positives = 203/443 (45%), Gaps = 85/443 (19%)
Query: 26 DCPLDHLP---CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGK 82
D P LP L + + L +M I+S P+Q ++ I GL +DL +S TGSGK
Sbjct: 242 DQPFSSLPGAASLSRPVLLGLSSMSITSPTPIQ----RQAIPLGLLGKDLVCSSVTGSGK 297
Query: 83 TLSYALPIVQTLSNRAVRC---LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQS 139
TL Y +PIV+ L R + R +++ PTR+LA+QV V +A L+ L VG
Sbjct: 298 TLGYMVPIVERLIWRDKKGGGRTRVMILTPTRELAVQVFQVGKLLARFTDLTFSLCVGGM 357
Query: 140 SIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLC 199
+ + +EL +RP +I++ TPGR++DHI TRGF+LE L
Sbjct: 358 DLRTQEAELRERP---------------------EIVIGTPGRVIDHIRNTRGFSLETLE 396
Query: 200 YLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGF 259
LV+DE DR+L E +Q L + I C
Sbjct: 397 ILVIDEADRILEEGFQDELEEI----------------------------ISNC------ 422
Query: 260 KDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG---ETRYKLPERLESYKLICES 316
P R M+ SAT+ + LA+L L P+ + T L + K +
Sbjct: 423 ---PRSRQT-MLFSATVNESVADLAKLSLDKPIRIKIDPPKSTAAGLTQEFLKVKDSASN 478
Query: 317 K--------LKPLYLVALLQ--SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYS 366
K + LV L + + + + I+F S HR+ + + F +K +E
Sbjct: 479 KKAASLTDVTRQAILVTLCKASAFSKGRTIIFFRSKVGAHRMKIIFSLFS---LKAEELH 535
Query: 367 GLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRT 426
G Q R L+ F++G+ L+++D +RG+D++GV V+NY+ P Y+HR GRT
Sbjct: 536 GNLNQQQRLAALQKFKDGETSFLLATDLASRGLDIKGVERVINYEPPTQYDVYLHRIGRT 595
Query: 427 ARAGQLGRCFTLLHKDEVKRFKK 449
ARAG G TL+ + + K K+
Sbjct: 596 ARAGTKGSALTLVGESDRKLIKE 618
>gi|259147982|emb|CAY81231.1| Drs1p [Saccharomyces cerevisiae EC1118]
Length = 754
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 124/416 (29%), Positives = 195/416 (46%), Gaps = 86/416 (20%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96
P LK L ++G P+Q A TI L +D+ + TGSGKT ++ +PI++ L
Sbjct: 243 PVLK-GLASLGYVKPSPIQSA----TIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLY 297
Query: 97 RAVR--CLRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPK 153
+ + R +V+LPTR+LA+QV DV IA V G++ GLAVG ++ + L RP
Sbjct: 298 KPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSRP- 356
Query: 154 LEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA 213
DI++ATPGR +DHI + F ++ + LV+DE DR+L E
Sbjct: 357 --------------------DIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEG 396
Query: 214 YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273
+Q L ++ L S+ +N ++ S
Sbjct: 397 FQDELNEIMGLLPSNRQN--------------------------------------LLFS 418
Query: 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE-------SKLKPLYLVAL 326
AT+ L L L P+ + P + + KL E LKP L L
Sbjct: 419 ATMNSKIKSLVSLSLKKPVRIMID------PPKKAATKLTQEFVRIRKRDHLKPALLFNL 472
Query: 327 LQSL---GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 383
++ L G+++ +VF + E+ HRL ++ G L + + E G Q R ++ F+
Sbjct: 473 IRKLDPTGQKRIVVFVARKETAHRLRIIM---GLLGMSVGELHGSLTQEQRLDSVNKFKN 529
Query: 384 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439
++ VL+ +D +RG+D+ + V+NYD P + Y+HR GRTARAG+ GR T +
Sbjct: 530 LEVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFV 585
>gi|171656|gb|AAA34666.1| ATP-dependent RNA helicase [Saccharomyces cerevisiae]
Length = 722
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 124/424 (29%), Positives = 196/424 (46%), Gaps = 86/424 (20%)
Query: 29 LDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL 88
+ L P LK L ++G P+Q A TI L +D+ + TGSGKT ++ +
Sbjct: 203 FNSLSLSRPVLK-GLASLGYVKPSPIQSA----TIPIALLGKDIIAGAVTGSGKTAAFMI 257
Query: 89 PIVQTLSNRAVR--CLRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEI 145
PI++ L + + R +V+LPTR+LA+QV DV IA V G++ GLAVG ++ +
Sbjct: 258 PIIERLLYKPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQE 317
Query: 146 SELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 205
L RP DI++ATPGR +DHI + F ++ + LV+DE
Sbjct: 318 QMLKSRP---------------------DIVIATPGRFIDHIRNSASFNVDSVEILVMDE 356
Query: 206 TDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYP 265
DR+L E +Q L ++ L S+ +N
Sbjct: 357 ADRMLEEGFQDELNEIMGLLPSNRQN---------------------------------- 382
Query: 266 RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE-------SKL 318
++ SAT+ L L L P+ + P + + KL E L
Sbjct: 383 ----LLFSATMNSKIKSLVSLSLKKPVRIMID------PPKKAATKLTQEFVRIRKRDHL 432
Query: 319 KPLYLVALLQSL---GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRS 375
KP L L++ L G+++ +VF + E+ HRL ++ G + + E G Q R
Sbjct: 433 KPALLFNLIRKLDPTGQKRIVVFVARKETAHRLRIIMGLLG---MSVGELHGSLTQEQRL 489
Query: 376 KTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRC 435
++ F+ ++ VL+ +D +RG+D+ + V+NYD P + Y+HR GRTARAG+ GR
Sbjct: 490 DSVNKFKNLEVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRS 549
Query: 436 FTLL 439
T +
Sbjct: 550 VTFV 553
>gi|349579719|dbj|GAA24880.1| K7_Drs1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 756
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 124/416 (29%), Positives = 195/416 (46%), Gaps = 86/416 (20%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96
P LK L ++G P+Q A TI L +D+ + TGSGKT ++ +PI++ L
Sbjct: 245 PVLK-GLASLGYVKPSPIQSA----TIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLY 299
Query: 97 RAVR--CLRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPK 153
+ + R +V+LPTR+LA+QV DV IA V G++ GLAVG ++ + L RP
Sbjct: 300 KPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSRP- 358
Query: 154 LEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA 213
DI++ATPGR +DHI + F ++ + LV+DE DR+L E
Sbjct: 359 --------------------DIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEG 398
Query: 214 YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273
+Q L ++ L S+ +N ++ S
Sbjct: 399 FQDELNEIMGLLPSNRQN--------------------------------------LLFS 420
Query: 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE-------SKLKPLYLVAL 326
AT+ L L L P+ + P + + KL E LKP L L
Sbjct: 421 ATMNSKIKSLVSLSLKKPVRIMID------PPKKAATKLTQEFVRIRKRDHLKPALLFNL 474
Query: 327 LQSL---GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 383
++ L G+++ +VF + E+ HRL ++ G L + + E G Q R ++ F+
Sbjct: 475 IRKLDPTGQKRIVVFVARKETAHRLRIIM---GLLGMSVGELHGSLTQEQRLDSVNKFKN 531
Query: 384 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439
++ VL+ +D +RG+D+ + V+NYD P + Y+HR GRTARAG+ GR T +
Sbjct: 532 LEVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFV 587
>gi|256272311|gb|EEU07295.1| Drs1p [Saccharomyces cerevisiae JAY291]
Length = 751
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 124/416 (29%), Positives = 195/416 (46%), Gaps = 86/416 (20%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96
P LK L ++G P+Q A TI L +D+ + TGSGKT ++ +PI++ L
Sbjct: 240 PVLK-GLASLGYVKPSPIQSA----TIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLY 294
Query: 97 RAVR--CLRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPK 153
+ + R +V+LPTR+LA+QV DV IA V G++ GLAVG ++ + L RP
Sbjct: 295 KPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSRP- 353
Query: 154 LEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA 213
DI++ATPGR +DHI + F ++ + LV+DE DR+L E
Sbjct: 354 --------------------DIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEG 393
Query: 214 YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273
+Q L ++ L S+ +N ++ S
Sbjct: 394 FQDELNEIMGLLPSNRQN--------------------------------------LLFS 415
Query: 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE-------SKLKPLYLVAL 326
AT+ L L L P+ + P + + KL E LKP L L
Sbjct: 416 ATMNSKIKSLVSLSLKKPVRIMID------PPKKAATKLTQEFVRIRKRDHLKPALLFNL 469
Query: 327 LQSL---GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 383
++ L G+++ +VF + E+ HRL ++ G L + + E G Q R ++ F+
Sbjct: 470 IRKLDPTGQKRIVVFVARKETAHRLRIIM---GLLGMSVGELHGSLTQEQRLDSVNKFKN 526
Query: 384 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439
++ VL+ +D +RG+D+ + V+NYD P + Y+HR GRTARAG+ GR T +
Sbjct: 527 LEVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFV 582
>gi|392297967|gb|EIW09066.1| Drs1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 748
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 124/416 (29%), Positives = 195/416 (46%), Gaps = 86/416 (20%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96
P LK L ++G P+Q A TI L +D+ + TGSGKT ++ +PI++ L
Sbjct: 237 PVLK-GLASLGYVKPSPIQSA----TIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLY 291
Query: 97 RAVR--CLRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPK 153
+ + R +V+LPTR+LA+QV DV IA V G++ GLAVG ++ + L RP
Sbjct: 292 KPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSRP- 350
Query: 154 LEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA 213
DI++ATPGR +DHI + F ++ + LV+DE DR+L E
Sbjct: 351 --------------------DIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEG 390
Query: 214 YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273
+Q L ++ L S+ +N ++ S
Sbjct: 391 FQDELNEIMGLLPSNRQN--------------------------------------LLFS 412
Query: 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE-------SKLKPLYLVAL 326
AT+ L L L P+ + P + + KL E LKP L L
Sbjct: 413 ATMNSKIKSLVSLSLKKPVRIMID------PPKKAATKLTQEFVRIRKRDHLKPALLFNL 466
Query: 327 LQSL---GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 383
++ L G+++ +VF + E+ HRL ++ G L + + E G Q R ++ F+
Sbjct: 467 IRKLDPTGQKRIVVFVARKETAHRLRIIM---GLLGMSVGELHGSLTQEQRLDSVNKFKN 523
Query: 384 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439
++ VL+ +D +RG+D+ + V+NYD P + Y+HR GRTARAG+ GR T +
Sbjct: 524 LEVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFV 579
>gi|330794252|ref|XP_003285194.1| hypothetical protein DICPUDRAFT_7134 [Dictyostelium purpureum]
gi|325084915|gb|EGC38333.1| hypothetical protein DICPUDRAFT_7134 [Dictyostelium purpureum]
Length = 434
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 128/468 (27%), Positives = 220/468 (47%), Gaps = 86/468 (18%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117
+ +ETI L RD+ + TGSGKT ++ +P++Q L + + + L + PTR+LA Q+
Sbjct: 36 IQRETIPWALKGRDIIGLAQTGSGKTGAFVIPVLQKLLEQP-QGIFCLCIAPTRELAFQI 94
Query: 118 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177
+ F A+ +G+ + VG + +L K+P I++
Sbjct: 95 AEQFNALGATIGVKTCVLVGGIDSMTQSLQLAKKPH---------------------III 133
Query: 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 237
+PGR++ H+ T+GF L + Y ++DE DRL ++ + +L++ + +
Sbjct: 134 GSPGRIIFHLENTKGFNLRSIKYFIMDEADRLFGADFEEEVNNILKVIPKER-------N 186
Query: 238 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 297
TFL SAT+T KL + L +P+ +
Sbjct: 187 TFL-------------------------------FSATMTSKVAKLQRASLVNPVKIQVA 215
Query: 298 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 357
T+Y+ + L L K K YLV +L L I+FTS+ S++++ +L + G
Sbjct: 216 -TKYQTVDTLIQQYLFIPFKYKECYLVYILNELAGNLTIIFTSTCASSNKVTLMLRNLGL 274
Query: 358 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417
I I +G Q+ R +L F++G +LV++D RG+D+ V+ V+NYD P K
Sbjct: 275 AAIPI---NGDMDQAKRLASLSKFKQGTKSILVATDVAARGLDIPMVDLVINYDVPTNSK 331
Query: 418 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL--LQKADNDSCPIHSIPSSLIESLRPV 475
YIHR GRTARAG GR TL+ + +V+ ++++ + K D P +++ L V
Sbjct: 332 EYIHRVGRTARAGNSGRAITLVTQYDVEMYQRIEFVLKKKLDEFPCQE--DTVLIFLERV 389
Query: 476 YKSVRGGISDEAFWKVGCDLHGVNRVRRSFYQTSGDRALG--KGMVAF 521
++VR N+++ S Y +SGD++ G +G + F
Sbjct: 390 TQAVR---------------EATNKLKDSGY-SSGDKSSGDAEGSIGF 421
>gi|160380652|sp|A7A0P8.1|DRS1_YEAS7 RecName: Full=ATP-dependent RNA helicase DRS1; AltName:
Full=Deficiency of ribosomal subunits protein 1
gi|151941161|gb|EDN59539.1| conserved protein [Saccharomyces cerevisiae YJM789]
gi|190406035|gb|EDV09302.1| ATP dependent RNA helicase [Saccharomyces cerevisiae RM11-1a]
gi|207343227|gb|EDZ70754.1| YLL008Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 754
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 124/416 (29%), Positives = 195/416 (46%), Gaps = 86/416 (20%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96
P LK L ++G P+Q A TI L +D+ + TGSGKT ++ +PI++ L
Sbjct: 243 PVLK-GLASLGYVKPSPIQSA----TIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLY 297
Query: 97 RAVR--CLRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPK 153
+ + R +V+LPTR+LA+QV DV IA V G++ GLAVG ++ + L RP
Sbjct: 298 KPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSRP- 356
Query: 154 LEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA 213
DI++ATPGR +DHI + F ++ + LV+DE DR+L E
Sbjct: 357 --------------------DIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEG 396
Query: 214 YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273
+Q L ++ L S+ +N ++ S
Sbjct: 397 FQDELNEIMGLLPSNRQN--------------------------------------LLFS 418
Query: 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE-------SKLKPLYLVAL 326
AT+ L L L P+ + P + + KL E LKP L L
Sbjct: 419 ATMNSKIKSLVSLSLKKPVRIMID------PPKKAATKLTQEFVRIRKRDHLKPALLFNL 472
Query: 327 LQSL---GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 383
++ L G+++ +VF + E+ HRL ++ G L + + E G Q R ++ F+
Sbjct: 473 IRKLDPTGQKRIVVFVARKETAHRLRIIM---GLLGMSVGELHGSLTQEQRLDSVNKFKN 529
Query: 384 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439
++ VL+ +D +RG+D+ + V+NYD P + Y+HR GRTARAG+ GR T +
Sbjct: 530 LEVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFV 585
>gi|6323021|ref|NP_013093.1| Drs1p [Saccharomyces cerevisiae S288c]
gi|1706521|sp|P32892.2|DRS1_YEAST RecName: Full=ATP-dependent RNA helicase DRS1; AltName:
Full=Deficiency of ribosomal subunits protein 1
gi|1360171|emb|CAA97452.1| DRS1 [Saccharomyces cerevisiae]
gi|1495215|emb|CAA62783.1| L1345/DRS1 protein [Saccharomyces cerevisiae]
gi|285813414|tpg|DAA09310.1| TPA: Drs1p [Saccharomyces cerevisiae S288c]
Length = 752
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 124/416 (29%), Positives = 195/416 (46%), Gaps = 86/416 (20%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96
P LK L ++G P+Q A TI L +D+ + TGSGKT ++ +PI++ L
Sbjct: 241 PVLK-GLASLGYVKPSPIQSA----TIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLY 295
Query: 97 RAVR--CLRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPK 153
+ + R +V+LPTR+LA+QV DV IA V G++ GLAVG ++ + L RP
Sbjct: 296 KPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSRP- 354
Query: 154 LEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA 213
DI++ATPGR +DHI + F ++ + LV+DE DR+L E
Sbjct: 355 --------------------DIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEG 394
Query: 214 YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273
+Q L ++ L S+ +N ++ S
Sbjct: 395 FQDELNEIMGLLPSNRQN--------------------------------------LLFS 416
Query: 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE-------SKLKPLYLVAL 326
AT+ L L L P+ + P + + KL E LKP L L
Sbjct: 417 ATMNSKIKSLVSLSLKKPVRIMID------PPKKAATKLTQEFVRIRKRDHLKPALLFNL 470
Query: 327 LQSL---GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 383
++ L G+++ +VF + E+ HRL ++ G L + + E G Q R ++ F+
Sbjct: 471 IRKLDPTGQKRIVVFVARKETAHRLRIIM---GLLGMSVGELHGSLTQEQRLDSVNKFKN 527
Query: 384 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439
++ VL+ +D +RG+D+ + V+NYD P + Y+HR GRTARAG+ GR T +
Sbjct: 528 LEVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFV 583
>gi|410078383|ref|XP_003956773.1| hypothetical protein KAFR_0C06420 [Kazachstania africana CBS 2517]
gi|372463357|emb|CCF57638.1| hypothetical protein KAFR_0C06420 [Kazachstania africana CBS 2517]
Length = 739
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 125/418 (29%), Positives = 199/418 (47%), Gaps = 76/418 (18%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96
P LK L ++G + P+Q A TI L +D+ + TGSGKT ++ +PI++ L
Sbjct: 224 PVLK-GLSSLGFTKPSPIQSA----TIPIALLGKDIVAGAVTGSGKTAAFMIPIIERLLY 278
Query: 97 R--AVRCLRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPK 153
+ V R +++ PTR+LA+Q+ DV I V GL+ GLAVG ++ + L RP
Sbjct: 279 KPAKVASTRVVILTPTRELAIQISDVAKKIGHFVNGLTFGLAVGGLNLRQQEQILKSRP- 337
Query: 154 LEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA 213
DI++ATPGR +DH+ + F+++ + LV+DE DR+L E
Sbjct: 338 --------------------DIVIATPGRFIDHVRNSASFSVDRVEILVLDEADRMLEEG 377
Query: 214 YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273
+Q L ++ T LP+ R ++ S
Sbjct: 378 FQDELSEIM---------------TLLPT-----------------------RRQNLLFS 399
Query: 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL--ESYKLICESKLKP--LY-LVALLQ 328
AT+ +L L L P+ + + + +RL E ++ LKP LY L+ L
Sbjct: 400 ATMNSKIKQLVSLSLKKPVRIMIDPPK-QAADRLVQEFVRIRKRDHLKPALLYNLIRKLD 458
Query: 329 SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 388
S G+++ +VF S E HRL +L G + + E G Q R ++ F+ + V
Sbjct: 459 STGQKRIVVFVSRKEVAHRLRIILGLLG---MGVAELHGSLSQEQRLDSVNKFKSLDVPV 515
Query: 389 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 446
L+ +D +RG+D+ + V+NYD P + Y+HR GRTARAG+ GR T + + +R
Sbjct: 516 LICTDLASRGLDIPKIEIVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQER 573
>gi|312083101|ref|XP_003143720.1| ATP-dependent RNA helicase in chromosome III [Loa loa]
gi|307761116|gb|EFO20350.1| ATP-dependent RNA helicase in chromosome III [Loa loa]
Length = 463
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 112/382 (29%), Positives = 186/382 (48%), Gaps = 64/382 (16%)
Query: 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128
+RD+ + TGSGKT ++A+PI+Q L + L ALV+ PTR+LA Q+ + F A+ ++
Sbjct: 61 KRDIIGLAETGSGKTAAFAIPILQALLETPQK-LFALVLTPTRELAFQIGEQFEALGASI 119
Query: 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHIN 188
G+ + + VG + L KRP ++VATPGRL+DH+
Sbjct: 120 GILIAVIVGGVDTVTQSLALAKRPH---------------------VIVATPGRLVDHLE 158
Query: 189 ATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLK 248
T+GF L L YLV+DE DR+L ++ + +L++ + T+L
Sbjct: 159 NTKGFNLRALKYLVMDEADRILNMDFEVEVEKILKVIPKERR-------TYL-------- 203
Query: 249 TIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLE 308
SAT+T+ KL + L+ P+ + ++Y+ ++L+
Sbjct: 204 -----------------------YSATMTKKVAKLERASLNDPVRIEVS-SKYQTVDKLK 239
Query: 309 SYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL 368
Y + K K YLV +L + + IVF S+ S R +L G + + G
Sbjct: 240 QYYIFIPYKYKEAYLVYILNEMAGQTAIVFCSTCVSALRTALMLRKLGFGAVPL---HGQ 296
Query: 369 QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 428
Q+ R +L F+ L+ +D +RG+D+ V+ V+NYD P K Y+HR GRTAR
Sbjct: 297 MSQAKRLGSLNKFKSKTSTTLICTDVASRGLDIPHVDLVLNYDVPTQSKDYVHRVGRTAR 356
Query: 429 AGQLGRCFTLLHKDEVKRFKKL 450
AG+ G T + + +V+ ++++
Sbjct: 357 AGRSGVAVTFVTQYDVEIYQRI 378
>gi|323303947|gb|EGA57727.1| Drs1p [Saccharomyces cerevisiae FostersB]
Length = 755
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 124/416 (29%), Positives = 195/416 (46%), Gaps = 86/416 (20%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96
P LK L ++G P+Q A TI L +D+ + TGSGKT ++ +PI++ L
Sbjct: 244 PVLK-GLASLGYVKPSPIQSA----TIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLY 298
Query: 97 RAVR--CLRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPK 153
+ + R +V+LPTR+LA+QV DV IA V G++ GLAVG ++ + L RP
Sbjct: 299 KPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSRP- 357
Query: 154 LEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA 213
DI++ATPGR +DHI + F ++ + LV+DE DR+L E
Sbjct: 358 --------------------DIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEG 397
Query: 214 YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273
+Q L ++ L S+ +N ++ S
Sbjct: 398 FQDELNEIMGLLPSNRQN--------------------------------------LLFS 419
Query: 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE-------SKLKPLYLVAL 326
AT+ L L L P+ + P + + KL E LKP L L
Sbjct: 420 ATMNSKIKSLVSLSLKKPVRIMID------PPKKAATKLTQEFVRIRKRDHLKPALLFNL 473
Query: 327 LQSL---GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 383
++ L G+++ +VF + E+ HRL ++ G L + + E G Q R ++ F+
Sbjct: 474 IRKLDPTGQKRIVVFVARKETAHRLRIIM---GLLGMSVGELHGSLTQEQRLDSVNKFKN 530
Query: 384 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439
++ VL+ +D +RG+D+ + V+NYD P + Y+HR GRTARAG+ GR T +
Sbjct: 531 LEVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFV 586
>gi|156083170|ref|XP_001609069.1| DEAD/DEAH box helicase and helicase conserved C-terminal domain
containing protein [Babesia bovis T2Bo]
gi|154796319|gb|EDO05501.1| DEAD/DEAH box helicase and helicase conserved C-terminal domain
containing protein [Babesia bovis]
Length = 433
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 119/414 (28%), Positives = 195/414 (47%), Gaps = 65/414 (15%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96
P L A Q+MG + P+Q+A I L RD+ + TGSGKT ++ +P++ L
Sbjct: 52 PELCKACQSMGWQAPTPIQMAA----IPHALNGRDVIGLAVTGSGKTGAFTIPVLHHLLE 107
Query: 97 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 156
R + +V+ P+R+L Q+ + F A++ ++ L V + +G + + S L KRP
Sbjct: 108 DVQR-IYCVVLAPSRELCEQIAEQFRALSSSIALQVCVIIGGVDMVHQASALAKRPH--- 163
Query: 157 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 216
++VA+PGRL DH+ T+GF+L + LV+DE DRLL + +
Sbjct: 164 ------------------VIVASPGRLADHVENTKGFSLSTVKKLVIDEADRLLSQDFDE 205
Query: 217 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 276
L ++ ++ + TFL SAT+
Sbjct: 206 ELDKIIHAMPTERQ-------TFL-------------------------------FSATM 227
Query: 277 TQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCI 336
T+ +KL ++ L P+ + + +Y E L+ L+ K K YL ALL I
Sbjct: 228 TKKLSKLQKMALKDPISVQVDD-KYSTAENLDQRFLLVPQKYKYTYLAALLWYYATRTAI 286
Query: 337 VFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT 396
VF + + R L I G Q+ RS+ L+ F+ G + +LV+++
Sbjct: 287 VFCKTCDGAQRCAAYLKGLKFTTICKVCLHGKMTQADRSRALQIFKTGSVNILVATEVGG 346
Query: 397 RGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
RG+D+ V V+N+D P K YIHR GRTARAG+ G T++ + +V+ F+++
Sbjct: 347 RGLDLPMVELVINFDIPECSKDYIHRVGRTARAGRSGLALTVVTQYDVELFQRI 400
>gi|409045997|gb|EKM55477.1| hypothetical protein PHACADRAFT_184272 [Phanerochaete carnosa
HHB-10118-sp]
Length = 472
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 132/419 (31%), Positives = 200/419 (47%), Gaps = 51/419 (12%)
Query: 32 LPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIV 91
L +DP L+ ALQ + +S +Q A L RD+ + TGSGKT ++ALPI+
Sbjct: 26 LGLIDPLLE-ALQQLSFTSPTDIQTAALPH----ALEGRDIIGVASTGSGKTAAFALPIL 80
Query: 92 QTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
Q L + R L A V+ PTR+LA Q+ + F A+ A+G+ VG + L K+
Sbjct: 81 QKLWDDP-RGLFACVIAPTRELAYQITEHFEALGSAMGVRCATVVGGIDEMSQAVALAKK 139
Query: 152 PKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 211
P ++VATPGRL H+ T+GF+L L +LV+DE DRLL
Sbjct: 140 PH---------------------VVVATPGRLQYHLENTKGFSLRSLKFLVLDEADRLLD 178
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
+ L +L++ + +T+L F + T + ++R P V++
Sbjct: 179 MDFGPILDKILKVIPQER-------TTYL---FSATMTTKVAKLQRASLSNP----VRVE 224
Query: 272 LSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLG 331
+S K A L L L RY L Y L K + L+ L SL
Sbjct: 225 VS-------EKYAPLLLIRLLMRLRVSRRYSTVSTLLQYYLFIPLVQKDVNLMYLANSLA 277
Query: 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVS 391
I+FT +V RL ++ G + + G QS R L F+ G +VLV+
Sbjct: 278 SNSIIIFTRTVHDCQRLAIMMRTLGFPAVPLH---GQLSQSARLGALGKFKSGGRKVLVA 334
Query: 392 SDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
+D +RG+D+ V+ V+NYD P + K YIHR GRTARAG+ G+ T + + +V+ +++
Sbjct: 335 TDVASRGLDIPHVDAVINYDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELVQRI 393
>gi|167379929|ref|XP_001735325.1| ATP-dependent RNA helicase DBP6 [Entamoeba dispar SAW760]
gi|165902737|gb|EDR28474.1| ATP-dependent RNA helicase DBP6, putative [Entamoeba dispar SAW760]
Length = 502
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 130/448 (29%), Positives = 212/448 (47%), Gaps = 66/448 (14%)
Query: 47 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALV 106
GI L+P+Q V Q + D+ + +PTGSGKTL+Y LP+++ L N ++ +V
Sbjct: 86 GIKELYPMQKIVQQFIFTT---DTDIAVRAPTGSGKTLAYTLPLLK-LINPLFNHIQTVV 141
Query: 107 VLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 166
++PT L LQV +V + + ++ ++G+SSI E S C
Sbjct: 142 LIPTLPLVLQVSNVMKPLLKTINCNLT-SLGESSIEKETS------------CNS----- 183
Query: 167 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 226
++V TP RL++H++ + L+ L YL+ DETD+LL +P + L
Sbjct: 184 -------HVIVTTPIRLLNHLSKS-TLDLKWLKYLIYDETDKLLT------IPALFPLLN 229
Query: 227 SDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQL 286
+ S P +KT + V + + ++ SATL+ P QL
Sbjct: 230 MIKKQYIS------PQYMVDIKTGKSLNVFSSSTN----QFRSLLFSATLSSSPKAFKQL 279
Query: 287 DLHHPLFLT-----------TGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKC 335
++ PL LT +T+Y LP +E+ K L ++ LL++ G K
Sbjct: 280 QMNKPLLLTFDDSFVRDINEITQTKYVLPSTIENRYTPVLPVEKDLVVLELLKTSG--KS 337
Query: 336 IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL----QRQSVRSKTLKAFREGKIQVLVS 391
I+F +S + L L+ E K K+ G +Q + K +K I V V+
Sbjct: 338 IIFCNSNNTAFVLFRLIQEMAEFIGKNKKEIGCIISSMKQKEKLKVIKKVENDSIDVFVT 397
Query: 392 SDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLL 451
+D M+RG+D++ + V+N+D P + Y+HRAGRT RAG G C T++ +EV K L
Sbjct: 398 TDLMSRGIDIKRLKTVINFDCPVSTQLYVHRAGRTGRAGNEGICHTIVLTNEVGNLKSYL 457
Query: 452 QKADNDSCPIHSIPSSLIESLRPVYKSV 479
+K +N+ +H +P + ESL Y +
Sbjct: 458 KKMNNE---LHKVPVIVEESLTKSYNKI 482
>gi|320583325|gb|EFW97540.1| ATP-dependent rRNA helicase, putative [Ogataea parapolymorpha DL-1]
Length = 470
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 127/420 (30%), Positives = 194/420 (46%), Gaps = 76/420 (18%)
Query: 21 VSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGS 80
V+LF++ L P + A++ + S+ P+Q +++ L RD+ + TGS
Sbjct: 66 VTLFKEL------GLQPDILDAIEKLNFSTPTPIQA----QSLPHSLQGRDIIGIAQTGS 115
Query: 81 GKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSS 140
GKT ++A+PI+Q L A A V+ PTR+LA Q+++ F A+ +GL VG
Sbjct: 116 GKTAAFAIPILQALWE-AQTPYFACVLAPTRELAYQIRETFDALGVNMGLRCSTIVGGMD 174
Query: 141 IADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCY 200
+ ++ EL+++P ++VATPGRLMDH+ T+GF+L+ L Y
Sbjct: 175 MMEQAKELMRKPH---------------------VIVATPGRLMDHLENTKGFSLKALKY 213
Query: 201 LVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK 260
LV+DE DRLL + L +L +
Sbjct: 214 LVMDEADRLLDMEFGPVLDRILNII----------------------------------- 238
Query: 261 DKPYPRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLK 319
PR K L SATLT KL + L P+ + + +Y + L ++ K
Sbjct: 239 ----PRERKTYLFSATLTSKVEKLQRASLIDPVKIAVND-KYSTVDTLIQTLMVVPDGYK 293
Query: 320 PLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLK 379
YL+ LL + IVF + ++ L G I + G Q+ R L
Sbjct: 294 NTYLIYLLNEYVGKSVIVFARTCAHAQKVALLARILGFSAIPL---HGQLTQAQRLGALN 350
Query: 380 AFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439
F+ G Q+LV++D RG+D+ V+ VVNYD P K YIHR GRTARAG+ G+ +L+
Sbjct: 351 KFKSGDKQILVATDVAARGLDIPSVDLVVNYDIPTDSKAYIHRVGRTARAGRSGKSVSLV 410
>gi|401624697|gb|EJS42747.1| drs1p [Saccharomyces arboricola H-6]
Length = 747
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 122/410 (29%), Positives = 195/410 (47%), Gaps = 74/410 (18%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96
P LK L ++G P+Q A TI L +D+ + TGSGKT ++ +PI++ L
Sbjct: 236 PVLK-GLASLGYVKPSPIQSA----TIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLY 290
Query: 97 RAVR--CLRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPK 153
+ + R +V+LPTR+LA+QV DV IA + G++ GLAVG ++ + L RP
Sbjct: 291 KPAKIAATRVIVLLPTRELAIQVADVGKQIARFLPGITFGLAVGGLNLRQQEQLLKTRP- 349
Query: 154 LEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA 213
DI++ATPGR +DHI + F ++ + LV+DE DR+L E
Sbjct: 350 --------------------DIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEG 389
Query: 214 YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273
+Q L ++ L S+ +N ++ S
Sbjct: 390 FQDELSEIMGLLPSNRQN--------------------------------------LLFS 411
Query: 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESY-KLICESKLKPLYLVALLQSL-- 330
AT+ L L L P+ + + + + ++ LKP L L++ L
Sbjct: 412 ATMNSKIKSLVSLSLKRPVRIMIDPPKQAAARLTQEFVRIRKRDHLKPSLLFNLIRKLDP 471
Query: 331 -GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 389
G+++ +VF + E+ HRL ++ G L + + E G Q R ++ F+ ++ VL
Sbjct: 472 MGQKRIVVFVARKETAHRLRIVM---GLLGMGVGELHGSLTQEQRLDSVNKFKNLEVPVL 528
Query: 390 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439
V +D +RG+D+ + VVNYD P + Y+HR GRTARAG+ GR TL+
Sbjct: 529 VCTDLASRGLDIPKIEVVVNYDMPKSYEIYLHRVGRTARAGREGRSVTLV 578
>gi|402591826|gb|EJW85755.1| Ddx49 protein [Wuchereria bancrofti]
Length = 461
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 118/398 (29%), Positives = 192/398 (48%), Gaps = 75/398 (18%)
Query: 43 LQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCL 102
L+++ I++ PVQV + D+ + TG+GKTL++ LPI+ L+ +
Sbjct: 59 LRHLAINTPTPVQVNCIPHILAGS----DVLGCAKTGTGKTLAFGLPILHELALDPYG-I 113
Query: 103 RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDP 162
AL++ PTR+LA+Q+ D FAA+ ++GL +G+ VG + S+L +RP
Sbjct: 114 CALILTPTRELAMQIGDQFAALGTSIGLKIGIIVGGKDRVAQSSDLARRPH--------- 164
Query: 163 EDVLQELQSAVDILVATPGRLMDHINA---TRGFTLEHLCYLVVDETDRLLREAYQAWLP 219
I+VATPGRL DH+ + G E L +LV+DE DRLL Y L
Sbjct: 165 ------------IIVATPGRLADHLESDSENTGKLFEKLRFLVLDEADRLLDGQYSVELK 212
Query: 220 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 279
T+L TFLP +L + SAT+T
Sbjct: 213 TIL---------------TFLPKQRQTL-----------------------LFSATITSA 234
Query: 280 PNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEK----C 335
++L Q+ + P F ++ ++LE ++C +K YLV ++++ E+
Sbjct: 235 LSQLHQVSVKKPYFF-EDKSEIATVDKLEQKYVLCPCAVKDAYLVYVVKNFHEKHPESLI 293
Query: 336 IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 395
++F+ + L + + G K+ Q R+ +L FR G+I++L+ +D
Sbjct: 294 LIFSHTCRECQALAIMFHGLG---FKVGSLHSQISQQERTSSLTKFRSGRIKILICTDVA 350
Query: 396 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 433
+RG+D+ V+ VVN++ P KTYIHR GR+ARAG+ G
Sbjct: 351 SRGLDIPHVDLVVNHNVPQNPKTYIHRVGRSARAGRFG 388
>gi|67471357|ref|XP_651630.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
gi|56468397|gb|EAL46244.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
gi|449702889|gb|EMD43437.1| ATP-dependent RNA helicase DBP6, putative [Entamoeba histolytica
KU27]
Length = 500
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 129/448 (28%), Positives = 213/448 (47%), Gaps = 66/448 (14%)
Query: 47 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALV 106
GI L+P+Q V Q + D+ + +PTGSGKTL+Y LP+++ L N ++ ++
Sbjct: 84 GIKELYPMQKIVQQFIFST---DTDIAVRAPTGSGKTLAYTLPLLK-LINPLFNHIQVVI 139
Query: 107 VLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 166
++PT LALQV +V + + ++ + +G+SSI E S C
Sbjct: 140 LIPTLPLALQVSNVMKPLLKTINCNL-VCLGESSIEKETS------------CNS----- 181
Query: 167 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 226
++V TP RL++H++ + L+ L YL+ DETD+LL +P + L
Sbjct: 182 -------HVIVTTPIRLLNHLSKS-TLDLKWLQYLIYDETDKLLT------IPALFPLLN 227
Query: 227 SDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQL 286
+ S P +KT + V + + ++ SATL+ P QL
Sbjct: 228 IIKKQYIS------PQYMVDIKTGKSLNVFSSSTN----QFRSLLFSATLSSSPKAFKQL 277
Query: 287 DLHHPLFLT-----------TGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKC 335
++ PL LT +T+Y LP +E+ K L ++ LL++ G K
Sbjct: 278 QMNKPLLLTFDDSFVRDINEITQTKYVLPSTIENRYTPVLPIEKDLVVLELLKTSG--KS 335
Query: 336 IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL----QRQSVRSKTLKAFREGKIQVLVS 391
I+F +S + L L+ E K K+ G +Q + K +K I V ++
Sbjct: 336 IIFCNSNNTAFVLFRLIQEMAEFIGKDKKEIGCIISSMKQKEKLKVIKRVENDSINVFIT 395
Query: 392 SDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLL 451
+D M+RG+D++G+ V+N+D P + Y+HRAGRT RAG G C T++ +EV K L
Sbjct: 396 TDLMSRGIDIKGLKTVINFDCPVSTQLYVHRAGRTGRAGNEGICHTIVLTNEVGNLKSYL 455
Query: 452 QKADNDSCPIHSIPSSLIESLRPVYKSV 479
+K +N+ +H + + ESL Y +
Sbjct: 456 KKMNNE---LHKVSVIVEESLIKSYNKI 480
>gi|407035126|gb|EKE37546.1| DEAD/DEAH box helicase, putative [Entamoeba nuttalli P19]
Length = 500
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 129/448 (28%), Positives = 213/448 (47%), Gaps = 66/448 (14%)
Query: 47 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALV 106
GI L+P+Q V Q + D+ + +PTGSGKTL+Y LP+++ L N ++ ++
Sbjct: 84 GIKELYPMQKIVQQFIFST---DTDIAVRAPTGSGKTLAYTLPLLK-LINPLFNHIQVVI 139
Query: 107 VLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 166
++PT LALQV +V + + ++ + +G+SSI E S C
Sbjct: 140 LIPTLPLALQVSNVMKPLLKTINCNL-VCLGESSIEKETS------------CNS----- 181
Query: 167 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 226
++V TP RL++H++ + L+ L YL+ DETD+LL +P + L
Sbjct: 182 -------HVIVTTPIRLLNHLSKS-TLDLKWLQYLIYDETDKLLT------IPALFPLLN 227
Query: 227 SDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQL 286
+ S P +KT + V + + ++ SATL+ P QL
Sbjct: 228 IIKKQYIS------PQYMVDIKTGKSLNVFSSSTN----QFRSLLFSATLSSSPKAFKQL 277
Query: 287 DLHHPLFLT-----------TGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKC 335
++ PL LT +T+Y LP +E+ K L ++ LL++ G K
Sbjct: 278 QMNKPLLLTFDDSFVRDINEITQTKYVLPSTIENRYTPVLPIEKDLVVLELLKTSG--KS 335
Query: 336 IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL----QRQSVRSKTLKAFREGKIQVLVS 391
I+F +S + L L+ E K K+ G +Q + K +K I V ++
Sbjct: 336 IIFCNSNNTAFVLFRLIQEMAEFIGKEKKEIGCIISSMKQKEKLKVIKRVENDSINVFIT 395
Query: 392 SDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLL 451
+D M+RG+D++G+ V+N+D P + Y+HRAGRT RAG G C T++ +EV K L
Sbjct: 396 TDVMSRGIDIKGLKTVINFDCPVSTQLYVHRAGRTGRAGNEGICHTIVLTNEVGNLKGYL 455
Query: 452 QKADNDSCPIHSIPSSLIESLRPVYKSV 479
+K +N+ +H + + ESL Y +
Sbjct: 456 KKMNNE---LHKVSVIVEESLIKSYNKI 480
>gi|389642833|ref|XP_003719049.1| ATP-dependent rRNA helicase RRP3 [Magnaporthe oryzae 70-15]
gi|351641602|gb|EHA49465.1| ATP-dependent rRNA helicase RRP3 [Magnaporthe oryzae 70-15]
Length = 562
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 120/390 (30%), Positives = 181/390 (46%), Gaps = 67/390 (17%)
Query: 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111
F + ++ I L RD+ + TGSGKT ++ALPI+Q+L + + L LV+ PTR
Sbjct: 154 FKKPTPIQEQAIPLALQGRDVIGIAETGSGKTAAFALPILQSLLEKP-QPLFGLVLAPTR 212
Query: 112 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 171
+LA Q+ F A+ ++ L + VG + + + L K+P
Sbjct: 213 ELAAQIGQTFEALGASISLRCAVVVGGLDMVSQSTALGKKPH------------------ 254
Query: 172 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN 231
I+VATPGRL+DH+ T+GF+L L +LV+DE DRLL + L +L+
Sbjct: 255 ---IVVATPGRLLDHLEKTKGFSLRSLKFLVMDEADRLLDLDFGPILDKILK-------- 303
Query: 232 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 291
FLP RR + SAT++ L + L P
Sbjct: 304 -------FLPRE-------RRT----------------FLFSATMSSKVESLQRASLRDP 333
Query: 292 LFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTL 351
L ++ ++ K L L K K +YL+ L + IVFT +V R+ L
Sbjct: 334 LKVSVSSSQEKTVSTLIQNPLFIPHKHKDVYLIYLANEFAGKTTIVFTRTVNEAQRVSIL 393
Query: 352 LN--HFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN 409
L FG + + G QS+R L F+ +LV++D RG+D+ V+ V+N
Sbjct: 394 LRTLSFGAIPLH-----GQLSQSMRLGALNKFKARSRDILVATDVAARGLDIPEVDLVIN 448
Query: 410 YDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439
+D P TYIHR GRTARAG+ GR +++
Sbjct: 449 FDMPQDSMTYIHRVGRTARAGRSGRAISII 478
>gi|152060562|sp|A4RGD1.1|RRP3_MAGO7 RecName: Full=ATP-dependent rRNA helicase RRP3
Length = 538
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 120/390 (30%), Positives = 181/390 (46%), Gaps = 67/390 (17%)
Query: 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111
F + ++ I L RD+ + TGSGKT ++ALPI+Q+L + + L LV+ PTR
Sbjct: 130 FKKPTPIQEQAIPLALQGRDVIGIAETGSGKTAAFALPILQSLLEKP-QPLFGLVLAPTR 188
Query: 112 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 171
+LA Q+ F A+ ++ L + VG + + + L K+P
Sbjct: 189 ELAAQIGQTFEALGASISLRCAVVVGGLDMVSQSTALGKKPH------------------ 230
Query: 172 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN 231
I+VATPGRL+DH+ T+GF+L L +LV+DE DRLL + L +L+
Sbjct: 231 ---IVVATPGRLLDHLEKTKGFSLRSLKFLVMDEADRLLDLDFGPILDKILK-------- 279
Query: 232 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 291
FLP RR + SAT++ L + L P
Sbjct: 280 -------FLPRE-------RRT----------------FLFSATMSSKVESLQRASLRDP 309
Query: 292 LFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTL 351
L ++ ++ K L L K K +YL+ L + IVFT +V R+ L
Sbjct: 310 LKVSVSSSQEKTVSTLIQNPLFIPHKHKDVYLIYLANEFAGKTTIVFTRTVNEAQRVSIL 369
Query: 352 LN--HFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN 409
L FG + + G QS+R L F+ +LV++D RG+D+ V+ V+N
Sbjct: 370 LRTLSFGAIPL-----HGQLSQSMRLGALNKFKARSRDILVATDVAARGLDIPEVDLVIN 424
Query: 410 YDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439
+D P TYIHR GRTARAG+ GR +++
Sbjct: 425 FDMPQDSMTYIHRVGRTARAGRSGRAISII 454
>gi|256087842|ref|XP_002580072.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
gi|350646373|emb|CCD58966.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
Length = 454
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 118/410 (28%), Positives = 200/410 (48%), Gaps = 71/410 (17%)
Query: 61 ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV 120
+ I L ++D+ + TGSGKT ++A+PI+Q L ++ R AL++ PTR+LALQVK +
Sbjct: 33 KAIPAALRKKDIVGLAETGSGKTAAFAIPILQDLLSKP-RHNFALILTPTRELALQVKCL 91
Query: 121 FAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180
F + GL V VG + D++ +L KR K ++V TP
Sbjct: 92 FMELGDKFGLKVVCLVGGQHVEDQVRDL-KRLKFH-------------------VIVGTP 131
Query: 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFL 240
GR++ H+ T+ L H+ Y V+DE D++L + ++ L ++
Sbjct: 132 GRVVYHLENTKELRLNHVRYFVLDEADQMLEDTFEQQLAFIIT----------------- 174
Query: 241 PSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR 300
K +P + SAT+TQ+ +K+ ++ P+ L ++
Sbjct: 175 ---------------------KLHPNKQTFLYSATMTQNVDKIRKVCTKSPVILEVS-SK 212
Query: 301 YKLPERLESYKLICESKLKPLYLVALL---QSLGEEKCIVFTSSVESTHRLCTLLNHFGE 357
Y ++L+ + K K YL+ LL +S + + I+FTS+ + R+ +L +
Sbjct: 213 YSKVDKLDHAFVFIPDKEKDFYLIYLLLSSKSADKSRSIIFTSTWRESFRIVAMLKSLAD 272
Query: 358 -LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD---KP 413
+ +G+ +Q R +L FR G++ +LV++D +RG+D V+ V+NYD +P
Sbjct: 273 VISAASAPLNGVMQQDKRQSSLFDFRTGRVSILVATDLASRGLDFPDVDLVINYDVPRRP 332
Query: 414 AY---IKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCP 460
++ K YIHR GRTARAG+ GR T + V R K ++ A N+ P
Sbjct: 333 SWSDSAKAYIHRVGRTARAGRHGRAITFVTPYSVTRLKA-IESALNERIP 381
>gi|296394809|ref|YP_003659693.1| DEAD/DEAH box helicase [Segniliparus rotundus DSM 44985]
gi|296181956|gb|ADG98862.1| DEAD/DEAH box helicase domain protein [Segniliparus rotundus DSM
44985]
Length = 452
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 124/415 (29%), Positives = 196/415 (47%), Gaps = 72/415 (17%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV-- 99
AL G+++ FP+Q A + P L RD+ PTGSGKTL++ LP++ L+N A
Sbjct: 18 ALAKAGVTAPFPIQAAA----LPPALEGRDVLGRGPTGSGKTLTFGLPMLARLANGASKP 73
Query: 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 159
R R LV++PTR+LA QV +A +VGL VG S+ +I EL +
Sbjct: 74 RKPRGLVLVPTRELAAQVASALTPLAASVGLRTASVVGGLSMQRQIDELAR--------- 124
Query: 160 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 219
VD+LVATPGRL DH+ A L+ + +DE D++ A +LP
Sbjct: 125 ------------GVDVLVATPGRLADHL-AQGTVVLDEVSVTALDEADQM---ADMGFLP 168
Query: 220 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 279
V+++ D+ + +++ SATL
Sbjct: 169 QVVKIL-----------------------------------DRTPKKGQRLLFSATLDGQ 193
Query: 280 PNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFT 339
+KL + L +P +T + +E + L + + K L + + E + I+F
Sbjct: 194 VDKLVRRYLDNPATCSTAPAAASV-STMEHHMLFVDQEQKKLVVTEIAAR--EGRTILFV 250
Query: 340 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 399
+ RL L G + G + Q+ R++TL+AF+ G + VLV+++ RG+
Sbjct: 251 HTKHGADRLTKRLRAVG---VSAAAIHGGKAQNNRTRTLEAFKSGDVAVLVATNVAARGV 307
Query: 400 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 454
++GV+ VV+ D PA K Y+HRAGRTARAG+ G TL+ E + + + + A
Sbjct: 308 HIDGVDLVVHVDPPADPKDYLHRAGRTARAGESGVVITLVTPAERRDAEAMARAA 362
>gi|328853252|gb|EGG02392.1| hypothetical protein MELLADRAFT_75483 [Melampsora larici-populina
98AG31]
Length = 486
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 118/399 (29%), Positives = 187/399 (46%), Gaps = 64/399 (16%)
Query: 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111
F + E+I L +D+ + TGSGKT ++ALP++Q+L + + A V+ PTR
Sbjct: 79 FKTPTPIQTESIPYALQNKDIIGLAQTGSGKTAAFALPVLQSLWD-SPSAFFACVLAPTR 137
Query: 112 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 171
+LA Q+ F A+ +G+ + VG + + L KRP
Sbjct: 138 ELAYQISQQFDALGSTIGVKTVVIVGGMDMMSQAIALSKRPH------------------ 179
Query: 172 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN 231
++VATPGRL DH+ T+GF+L +L +L++DE DRLL + + +L++ + +
Sbjct: 180 ---VIVATPGRLHDHLEHTKGFSLRNLQFLIMDEADRLLDMDFGPVIDKILKVIPKERK- 235
Query: 232 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 291
T+L SAT+T KL + L++P
Sbjct: 236 ------TYL-------------------------------FSATMTTKVAKLQRASLNNP 258
Query: 292 LFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTL 351
+ + +Y L L K K YLV L L + IVFT +V RL +
Sbjct: 259 VKVEVS-AKYDTVSALVQTYLFLPFKHKDTYLVYLANELSGKSLIVFTRTVHDASRLSLI 317
Query: 352 LNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD 411
L G + + G QS R L F+ G +LV++D +RG+D+ V+ V+N+D
Sbjct: 318 LRTLGFPAVPLH---GQLSQSARLGALNKFKSGDQSLLVATDVASRGLDIPAVDCVINFD 374
Query: 412 KPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
P K YIHR GRTARAG+ G+ TL+ + +V+ +++
Sbjct: 375 LPTNSKDYIHRVGRTARAGRSGKSITLVTQYDVELLQRI 413
>gi|401840824|gb|EJT43489.1| DRS1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 758
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 120/410 (29%), Positives = 193/410 (47%), Gaps = 74/410 (18%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96
P LK L N+G + P+Q A TI L +D+ + TGSGKT ++ +PI++ L
Sbjct: 247 PVLK-GLANLGYVTPSPIQSA----TIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLY 301
Query: 97 RAVR--CLRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPK 153
+ + R +V+LPTR+LALQV DV IA V ++ GLAVG ++ + L RP
Sbjct: 302 KPAKIASTRVIVLLPTRELALQVADVGKQIARFVPSITFGLAVGGLNLRQQEQMLKSRP- 360
Query: 154 LEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA 213
DI++ATPGR +DHI + F ++ + LV+DE DR+L E
Sbjct: 361 --------------------DIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEG 400
Query: 214 YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273
+Q L ++ L S +N ++ S
Sbjct: 401 FQDELNEIMGLLPSSRQN--------------------------------------LLFS 422
Query: 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESY-KLICESKLKPLYLVALLQSL-- 330
AT+ L L L P+ + + + + + ++ LKP + L++ L
Sbjct: 423 ATMNSKIKSLVSLSLKRPVRIMIDPPKKAATKLTQEFVRIRKRDHLKPALIFNLIRKLDP 482
Query: 331 -GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 389
+++ +VF + ES HRL ++ G L + + E G Q R ++ F+ ++ VL
Sbjct: 483 MAQKRIVVFVARKESAHRLRIIM---GLLGMSVGELHGSLTQEQRLDSVSKFKNLEVPVL 539
Query: 390 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439
+ +D +RG+D+ + V+NYD P + Y+HR GRTARAG+ GR T +
Sbjct: 540 ICTDLASRGLDIPKIEVVINYDMPKSHEVYLHRVGRTARAGREGRSVTFV 589
>gi|408395320|gb|EKJ74502.1| hypothetical protein FPSE_05252 [Fusarium pseudograminearum CS3096]
Length = 487
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 117/382 (30%), Positives = 180/382 (47%), Gaps = 63/382 (16%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117
+ +++I L RD+ + TGSGKT ++ALP++Q L ++ + L LV+ PTR+LA Q+
Sbjct: 86 IQEQSIPVALQGRDIIGLAETGSGKTAAFALPVLQALLDKP-QPLFGLVLAPTRELATQI 144
Query: 118 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177
F A+ + L + VG + + L K+P I+V
Sbjct: 145 GQAFEALGSLISLRCAVIVGGLDMVPQSIALGKKPH---------------------IIV 183
Query: 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 237
ATPGRL+DH+ T+GF+L L YL++DE DRLL + + +L+
Sbjct: 184 ATPGRLVDHLEKTKGFSLRTLKYLIMDEADRLLDMDFGPSIDKILK-------------- 229
Query: 238 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 297
F+P RR + SAT++ L + L P+ ++
Sbjct: 230 -FVPRE-------RRT----------------YLFSATISSKIESLQRASLRDPVKVSIS 265
Query: 298 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 357
+Y+ L + L K ++L+ L+ + IVFT +V T R+ LL G
Sbjct: 266 SNKYQTVSTLLQHYLFIPHPQKDVHLIYLINEHAGQSTIVFTRTVWETQRVSILLRTLGF 325
Query: 358 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417
I + G QS R L FR G +LV++D RG+D+ V+ V+NYD P K
Sbjct: 326 GAIPLH---GQLSQSSRLGALNKFRSGTRDILVATDVAARGLDIPSVDVVLNYDLPQDSK 382
Query: 418 TYIHRAGRTARAGQLGRCFTLL 439
TY+HR GRTARAG+ G +L+
Sbjct: 383 TYVHRVGRTARAGKSGVAISLV 404
>gi|440486596|gb|ELQ66446.1| ATP-dependent rRNA helicase rrp3 [Magnaporthe oryzae P131]
Length = 538
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 120/390 (30%), Positives = 180/390 (46%), Gaps = 67/390 (17%)
Query: 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111
F + ++ I L RD+ + TGSGKT ++ALPI+Q+L + + L LV+ PTR
Sbjct: 130 FKKPTPIQEQAIPLALQGRDVIGIAETGSGKTAAFALPILQSLLEKP-QPLFGLVLAPTR 188
Query: 112 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 171
+LA Q+ F A+ ++ L + VG + + L K+P
Sbjct: 189 ELAAQIGQTFEALGASISLRCAVVVGGLDMVSQSIALGKKPH------------------ 230
Query: 172 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN 231
I+VATPGRL+DH+ T+GF+L L +LV+DE DRLL + L +L+
Sbjct: 231 ---IVVATPGRLLDHLEKTKGFSLRSLKFLVMDEADRLLDLDFGPILDKILK-------- 279
Query: 232 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 291
FLP RR + SAT++ L + L P
Sbjct: 280 -------FLPRE-------RRT----------------FLFSATMSSKVESLQRASLRDP 309
Query: 292 LFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTL 351
L ++ ++ K L L K K +YL+ L + IVFT +V R+ L
Sbjct: 310 LKVSVSSSQEKTVSTLIQNPLFIPHKHKDVYLIYLANEFAGKTTIVFTRTVNEAQRVSIL 369
Query: 352 LN--HFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN 409
L FG + + G QS+R L F+ +LV++D RG+D+ V+ V+N
Sbjct: 370 LRTLSFGAIPL-----HGQLSQSMRLGALNKFKARSRDILVATDVAARGLDIPEVDLVIN 424
Query: 410 YDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439
+D P TYIHR GRTARAG+ GR +++
Sbjct: 425 FDMPQDSMTYIHRVGRTARAGRSGRAISII 454
>gi|358378227|gb|EHK15909.1| hypothetical protein TRIVIDRAFT_174620, partial [Trichoderma virens
Gv29-8]
Length = 652
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 121/353 (34%), Positives = 170/353 (48%), Gaps = 85/353 (24%)
Query: 13 PWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFER-D 71
PW+ +P+ VS+ P L L P+ L+ G + F VQ A + ++ D
Sbjct: 72 PWLSAPIRVSVDTQTPFTELGIL-PKAARVLEQKGYTEAFAVQTAALPLLLPTNKQQQGD 130
Query: 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG-- 129
L +++ TGSGKTL+YALPIV+ LSN V LRALVVLPTR+L Q ++VF A A
Sbjct: 131 LLVSAATGSGKTLAYALPIVRDLSNSVVTRLRALVVLPTRELVKQAQEVFELCAKAYEGE 190
Query: 130 ----LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQ------------------ 167
+ VG+A+G S+A E L+ + YDPE Q
Sbjct: 191 DRKRVRVGIAIGNQSLASEQDLLVSK-----ETRYDPEAYKQLEQEASNGASSSNNEDDL 245
Query: 168 ------------------------ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVV 203
+ S VDIL+ TPGRL++H++ T GF+L ++ +LVV
Sbjct: 246 DDLLSGPNTRRANPRIGPWQGQVIDFYSKVDILICTPGRLVEHLDQTPGFSLSYIRWLVV 305
Query: 204 DETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKP 263
DE D+LL +++Q WL VL+ F S FG+ R F D P
Sbjct: 306 DEADKLLAQSFQGWLDVVLE--------------KFKTSEFGA----------RDFPDMP 341
Query: 264 YPRLVKMVLSATLTQDPNKLAQLDLHHP--LFLTTGE----TRYKLPERLESY 310
Y + K++LSATLT+D + L QL L P + L +G+ T + LPE L Y
Sbjct: 342 YSGVRKILLSATLTRDLSLLNQLALRRPKLIVLESGKDVQVTEHSLPESLREY 394
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 68/116 (58%), Gaps = 3/116 (2%)
Query: 335 CIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQSVRSKTLKAFR--EGKIQVLVS 391
++FT S E+ RL LL + L +I + S+R KTL+AF ++++++
Sbjct: 494 SLIFTKSNEAALRLSRLLILLDKSLATQIGTLTSTTPTSIRRKTLRAFTTPSSPLRLIIA 553
Query: 392 SDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 447
SD + RG+D+ + +V+NYD P + +Y+HR GRTARAG+ G +TL+ E F
Sbjct: 554 SDLVARGIDIPKLPHVINYDLPPSVASYVHRVGRTARAGRSGCAWTLVGDGESGWF 609
>gi|307168298|gb|EFN61504.1| Probable ATP-dependent RNA helicase Dbp73D [Camponotus floridanus]
Length = 581
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 139/408 (34%), Positives = 180/408 (44%), Gaps = 69/408 (16%)
Query: 11 VLP-WMRSP--VDVSLFEDCPLDHL-PCLDPRLKVALQNMGISSLFPVQVAV--WQETIG 64
VLP W+ P + L L L LD +L L+ GI LFPVQ V W
Sbjct: 172 VLPDWLAHPEIISADLNSGPSLQELDSILDAKLIKVLKANGIVKLFPVQSNVIKWLHKCN 231
Query: 65 P----GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV 120
G + RD C+++PTGSGKTL+Y LPI+Q L R V +R L+VLP ++LA QV V
Sbjct: 232 MDRKLGRWPRDTCVSAPTGSGKTLAYVLPIIQELQTRLVPKIRCLIVLPVQELAAQVHRV 291
Query: 121 FAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180
L VGL G S E + +IK K E G Y S VDI++ATP
Sbjct: 292 MLTYTSHTNLKVGLLSGAFSFEQEQNSIIK--KTERGKYY----------STVDIIIATP 339
Query: 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFL 240
GRL+DHI T GF+ + L +LV+DE DR W+ +L
Sbjct: 340 GRLVDHILKTPGFSFDSLKFLVIDEADRAAE-----WM-------------------QYL 375
Query: 241 PSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET- 299
P S I G K P K++ SATL+QDP KL+ L L P+ TT T
Sbjct: 376 PEPH-SRAPILTLGNIHSSKITPAQ---KLLFSATLSQDPEKLSWLGLFQPILFTTVVTD 431
Query: 300 ----------------RYKLPERLESYKLICESKLKPLYLVALLQSLGE-EKCIVFTSSV 342
RY P L + C + KP+ L LL K +VFT+S
Sbjct: 432 KDTDVNLDKIAGDFIGRYTSPGELTELAMECNVEYKPVALYQLLTRHDTISKTLVFTNSG 491
Query: 343 ESTHRLCTLLNHFGELR-IKIKEYSGLQRQSVRSKTLKAFREGKIQVL 389
+THRL L+ R + + E S R L F +I V+
Sbjct: 492 HTTHRLALLMQSLLSKRNVAVGELSAQLAPKQRESVLGRFASAEIHVM 539
>gi|219123243|ref|XP_002181938.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217406539|gb|EEC46478.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 433
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 115/392 (29%), Positives = 188/392 (47%), Gaps = 64/392 (16%)
Query: 60 QETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK 118
Q ++ P FE RD+ + TGSGKT ++ LPI+Q L + V+ AL++ PTR+LA Q+
Sbjct: 66 QASVLPEAFEGRDIIGLAETGSGKTGAFCLPILQGLLRKPVKGTAALILTPTRELAFQIL 125
Query: 119 DVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVA 178
V + A+G + VG + L + P +++A
Sbjct: 126 QVVQGLGQAMGATAVCVVGGVDRTSQAIALGRNPH---------------------VVIA 164
Query: 179 TPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAST 238
TPGRL+DH+ T+GF L + YLV+DE DR+L ++ L +L DN
Sbjct: 165 TPGRLLDHLKDTKGFNLNKVRYLVLDEADRMLSMDFEEELHQIL-----DN--------- 210
Query: 239 FLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE 298
+P +L + SAT+T KL + L P+ +
Sbjct: 211 -MPEQRQTL-----------------------LFSATMTTQVAKLERASLKDPVKVQVS- 245
Query: 299 TRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGEL 358
T+++ P++L L +K K YL L+ + +VF ++ + RL +L + G
Sbjct: 246 TKFQTPKQLLQSYLFIPAKYKDCYLTYLINEHAGQSILVFGATCNNVQRLALMLRNLGFP 305
Query: 359 RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKT 418
+ + G QS R L+ F G +L+ +D +RG+D+ V+ V+N+D P + K
Sbjct: 306 AVCLH---GQMDQSKRLGALQKFSSGDRTILLCTDVASRGLDLPQVDLVINFDLPGHGKE 362
Query: 419 YIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
YIHR GRTARAG+ GR ++ + +V+ +++L
Sbjct: 363 YIHRVGRTARAGKSGRAIAMVTQYDVEVYQRL 394
>gi|261414880|ref|YP_003248563.1| DEAD/DEAH box helicase [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261371336|gb|ACX74081.1| DEAD/DEAH box helicase domain protein [Fibrobacter succinogenes
subsp. succinogenes S85]
Length = 463
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 132/441 (29%), Positives = 212/441 (48%), Gaps = 77/441 (17%)
Query: 2 EEAKKKSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQE 61
EE K++ P L ++ + D D LP K L+ G + L PVQ ++
Sbjct: 7 EETKERVNPFLTPVKIIEPKNKLPDYTFDMLP---EEQKAILREHGWTELMPVQ----RK 59
Query: 62 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121
+I L RD+ + S TGSGKT +YALP++Q + R +AL+++PTR+L +QV++ F
Sbjct: 60 SIPYMLAARDMLVQSKTGSGKTGAYALPLLQVIV-RDHPYPQALILVPTRELCIQVQEEF 118
Query: 122 AAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPG 181
++ G IK + G+ Y+P+ ++ L+S V ++VATPG
Sbjct: 119 EKLSKGTG-------------------IKSVAIFGGVSYEPQ--IKALRSGVHVIVATPG 157
Query: 182 RLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFL 240
RLMDHI RG L + LV+DE D +L + P + ++ + +L
Sbjct: 158 RLMDHIQ--RGNVDLLSIRDLVLDEADEMLS---MGFYPDMQKIRK------------YL 200
Query: 241 PSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP--LFLTTGE 298
P A + SAT+ Q LA+ + P FL+
Sbjct: 201 PKAISC-----------------------TMYSATIPQTVKSLAR-EFQRPGADFLSLSY 236
Query: 299 TRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGEL 358
+ + LE C+ K + +L+ E C++F + L +L+ +G
Sbjct: 237 DKV-IANNLEHRYYTCDVMEKDSMTIKVLEYYNPESCMIFCNYKRDVSYLEQVLSGYG-- 293
Query: 359 RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKT 418
++ SG QS+R KTL AFR+ K+++L+ +D RG+DV+ V +V+ YD PA +
Sbjct: 294 -FEVGALSGDVAQSLREKTLNAFRDKKLKILICTDVAARGIDVDHVTHVIVYDHPADHEV 352
Query: 419 YIHRAGRTARAGQLGRCFTLL 439
Y+HR+GRTARAG+ G C +L+
Sbjct: 353 YVHRSGRTARAGRSGLCISLI 373
>gi|440475921|gb|ELQ44569.1| ATP-dependent rRNA helicase rrp3 [Magnaporthe oryzae Y34]
Length = 906
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 122/407 (29%), Positives = 190/407 (46%), Gaps = 67/407 (16%)
Query: 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111
F + ++ I L RD+ + TGSGKT ++ALPI+Q+L + + L LV+ PTR
Sbjct: 130 FKKPTPIQEQAIPLALQGRDVIGIAETGSGKTAAFALPILQSLLEKP-QPLFGLVLAPTR 188
Query: 112 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 171
+LA Q+ F A+ ++ L + VG + + L K+P
Sbjct: 189 ELAAQIGQTFEALGASISLRCAVVVGGLDMVSQSIALGKKPH------------------ 230
Query: 172 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN 231
I+VATPGRL+DH+ T+GF+L L +LV+DE DRLL + L +L+
Sbjct: 231 ---IVVATPGRLLDHLEKTKGFSLRSLKFLVMDEADRLLDLDFGPILDKILK-------- 279
Query: 232 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 291
FLP RR + SAT++ L + L P
Sbjct: 280 -------FLPRE-------RRT----------------FLFSATMSSKVESLQRASLRDP 309
Query: 292 LFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTL 351
L ++ ++ K L L K K +YL+ L + IVFT +V R+ L
Sbjct: 310 LKVSVSSSQEKTVSTLIQNPLFIPHKHKDVYLIYLANEFAGKTTIVFTRTVNEAQRVSIL 369
Query: 352 LN--HFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN 409
L FG + + G QS+R L F+ +LV++D RG+D+ V+ V+N
Sbjct: 370 LRTLSFGAIPLH-----GQLSQSMRLGALNKFKARSRDILVATDVAARGLDIPEVDLVIN 424
Query: 410 YDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 456
+D P TYIHR GRTARAG+ GR +++ + +++ + ++ + A N
Sbjct: 425 FDMPQDSMTYIHRVGRTARAGRSGRAISIITQYDLELWLRIEKAALN 471
>gi|414876987|tpg|DAA54118.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 277
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 91/169 (53%), Positives = 109/169 (64%), Gaps = 14/169 (8%)
Query: 35 LDP---RLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIV 91
+DP R ALQ MGI +L PVQ A W E IG G FER++CIN PTG+GKTL+Y LPI+
Sbjct: 103 VDPFQLRRAEALQRMGIEALCPVQEAAWLERIGLGTFERNICINFPTGAGKTLAYVLPIM 162
Query: 92 QTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
Q ALVVL TRDLA QVK+ F IAP V VGLAVG+SSIA+E+ L+++
Sbjct: 163 Q-----------ALVVLHTRDLAWQVKEAFDVIAPVVDFLVGLAVGKSSIAEEVFSLVRQ 211
Query: 152 PKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCY 200
K E D E V E Q+ + ILVA GRL DHIN T F+L+HL Y
Sbjct: 212 SKQELYSTIDEEYVQMEPQTKIKILVAISGRLRDHINMTNDFSLKHLHY 260
>gi|294911908|ref|XP_002778095.1| DEAD box RNA helicase, putative [Perkinsus marinus ATCC 50983]
gi|239886216|gb|EER09890.1| DEAD box RNA helicase, putative [Perkinsus marinus ATCC 50983]
Length = 463
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 117/398 (29%), Positives = 186/398 (46%), Gaps = 65/398 (16%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--VRCLRALVVLPTRDLAL 115
+ +ETI L RDL + TGSGKT ++A+PI+Q L + A + A V+ PTR+L +
Sbjct: 55 IQEETIPYALQGRDLIALAETGSGKTGAFAIPIIQKLLDAAPHRKSTWACVLAPTRELCV 114
Query: 116 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDI 175
Q+ F + ++ L+ VG + + L K+P I
Sbjct: 115 QIGQQFEGLGASINLTTATIVGGLDMVTQAMALSKKPH---------------------I 153
Query: 176 LVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSD 235
+VA+PGRL+DH+ T+GF L+ + +LV+DE DRLL ++ L ++Q D +
Sbjct: 154 IVASPGRLVDHLENTKGFHLKTIKFLVMDEADRLLGMDFEDALNKIVQSCPRDRQ----- 208
Query: 236 ASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLT 295
TFL SAT+T ++L + L P+
Sbjct: 209 --TFL-------------------------------FSATMTNKVSQLQRASLTRPVKCE 235
Query: 296 TGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHF 355
++ + + L + K K YL ALL ++F + + R+ T L H
Sbjct: 236 VAR-KFDVAKGLVQNYMFVPHKHKHAYLAALLAHFKLSTVMIFVDTCLNAQRMATTLRHL 294
Query: 356 GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAY 415
G + + G Q+ R L FR G VLV++D RG+D+ V+ V+N+D P
Sbjct: 295 GHNCVCL---HGKMTQTHRLGALNQFRAGTRSVLVATDVAARGLDIPSVDVVINFDVPKN 351
Query: 416 IKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQK 453
+ YIHR GRTARAG+ GR TL+ + +++ F+++ K
Sbjct: 352 PEEYIHRVGRTARAGRTGRSVTLVTQYDIEPFQRIENK 389
>gi|294942246|ref|XP_002783449.1| DEAD box RNA helicase, putative [Perkinsus marinus ATCC 50983]
gi|239895904|gb|EER15245.1| DEAD box RNA helicase, putative [Perkinsus marinus ATCC 50983]
Length = 463
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 117/398 (29%), Positives = 186/398 (46%), Gaps = 65/398 (16%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--VRCLRALVVLPTRDLAL 115
+ +ETI L RDL + TGSGKT ++A+PI+Q L + A + A V+ PTR+L +
Sbjct: 55 IQEETIPYALQGRDLIALAETGSGKTGAFAIPIIQKLLDAAPHRKLTWACVLAPTRELCV 114
Query: 116 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDI 175
Q+ F + ++ L+ VG + + L K+P I
Sbjct: 115 QIGQQFEGLGASINLTTATIVGGLDMVTQAMSLSKKPH---------------------I 153
Query: 176 LVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSD 235
+VA+PGRL+DH+ T+GF L+ + +LV+DE DRLL ++ L ++Q D +
Sbjct: 154 IVASPGRLVDHLENTKGFHLKTIKFLVMDEADRLLGMDFEDALNKIVQSCPRDRQ----- 208
Query: 236 ASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLT 295
TFL SAT+T ++L + L P+
Sbjct: 209 --TFL-------------------------------FSATMTNKVSQLQRASLTRPVKCE 235
Query: 296 TGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHF 355
++ + + L + K K YL ALL ++F + + R+ T L H
Sbjct: 236 VAR-KFDVAKGLVQNYMFVPHKHKHAYLAALLAHFKLSTVMIFVDTCLNAQRMATTLRHL 294
Query: 356 GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAY 415
G + + G Q+ R L FR G VLV++D RG+D+ V+ V+N+D P
Sbjct: 295 GHNCVCL---HGKMTQTHRLGALNQFRAGTRSVLVATDVAARGLDIPSVDVVINFDVPKN 351
Query: 416 IKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQK 453
+ YIHR GRTARAG+ GR TL+ + +++ F+++ K
Sbjct: 352 PEEYIHRVGRTARAGRTGRSVTLVTQYDIEPFQRIENK 389
>gi|295656812|ref|XP_002788992.1| ATP-dependent RNA helicase dbp6 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226285824|gb|EEH41390.1| ATP-dependent RNA helicase dbp6 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 815
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 112/316 (35%), Positives = 163/316 (51%), Gaps = 61/316 (19%)
Query: 14 WMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQ-----ETIGPGLF 68
W+ P D + L ++PRL L+ G FP+Q AV++ E PG
Sbjct: 210 WLTEPFDAPVSVQQNFSDL-GVNPRLVSILEKRGYIRAFPIQAAVFELLSKGENRHPG-- 266
Query: 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128
DLCI++ TGSGKTL+YALP+V+ + A+ LR LV++PTR+L Q +D A
Sbjct: 267 --DLCISAATGSGKTLAYALPMVEGIEQSAIPKLRGLVIVPTRELVKQARDACELCATGT 324
Query: 129 GLSVGLAVGQSSIADEISELIKRPKL----------------EAGICYDPEDVLQELQSA 172
GL +G AVG +S+ +E + LIKR +L E ++ ++ + E +
Sbjct: 325 GLRIGTAVGTTSLKEEQALLIKRDQLYSPFASQTLSVQSMSSEDWAAFNVQEYIAEANVS 384
Query: 173 --------------VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWL 218
+DIL+ TPGRL+DHI T+GFTLEHL +LVVDE DRLL E++Q W
Sbjct: 385 HTALPNHVTTSSPCIDILICTPGRLVDHIRCTQGFTLEHLEWLVVDEADRLLNESFQEWT 444
Query: 219 PTV---LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSAT 275
V L++ R + ++ S F + G C + R +L K++LSAT
Sbjct: 445 EVVFPALEMERIVSNSK----SGFFLNQLG-------CRIHRR-------QLQKIILSAT 486
Query: 276 LTQDPNKLAQLDLHHP 291
+T+D KL L L +P
Sbjct: 487 VTRDIPKLNSLRLRNP 502
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 71/126 (56%), Gaps = 6/126 (4%)
Query: 336 IVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394
+VFT S ES RL LL L +I + + + KTL A+R GKI +++++D
Sbjct: 640 LVFTKSSESASRLALLLALMHPPLAKRIGTLTKSNKSTTSRKTLSAYRNGKISIVIATDC 699
Query: 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 454
+RG+D+ + +VVNYD PA + +YIHR GRTARAG G +T + E + F + K
Sbjct: 700 ASRGLDLPSLTHVVNYDVPASLTSYIHRVGRTARAGNSGSAWTFVAHREGRWFSNEIMK- 758
Query: 455 DNDSCP 460
CP
Sbjct: 759 ----CP 760
>gi|365759503|gb|EHN01286.1| Drs1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 737
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 120/410 (29%), Positives = 192/410 (46%), Gaps = 74/410 (18%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96
P LK L N+G P+Q A TI L +D+ + TGSGKT ++ +PI++ L
Sbjct: 226 PVLK-GLANLGYVMPSPIQSA----TIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLY 280
Query: 97 RAVR--CLRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPK 153
+ + R +V+LPTR+LALQV DV IA V ++ GLAVG ++ + L RP
Sbjct: 281 KPAKIASTRVIVLLPTRELALQVADVGKQIARFVPSITFGLAVGGLNLRQQEQMLKSRP- 339
Query: 154 LEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA 213
DI++ATPGR +DHI + F ++ + LV+DE DR+L E
Sbjct: 340 --------------------DIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEG 379
Query: 214 YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273
+Q L ++ L S +N ++ S
Sbjct: 380 FQDELNEIMGLLPSSRQN--------------------------------------LLFS 401
Query: 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESY-KLICESKLKPLYLVALLQSL-- 330
AT+ L L L P+ + + + + + ++ LKP + L++ L
Sbjct: 402 ATMNSKIKSLVSLSLKRPVRIMIDPPKKAATKLTQEFVRIRKRDHLKPALIFNLIRKLDP 461
Query: 331 -GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 389
+++ +VF + ES HRL ++ G L + + E G Q R ++ F+ ++ VL
Sbjct: 462 MAQKRIVVFVARKESAHRLRIIM---GLLGMSVGELHGSLTQEQRLDSVSKFKNLEVPVL 518
Query: 390 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439
+ +D +RG+D+ + V+NYD P + Y+HR GRTARAG+ GR T +
Sbjct: 519 ICTDLASRGLDIPKIEVVINYDMPKSHEVYLHRVGRTARAGREGRSVTFV 568
>gi|385789846|ref|YP_005820969.1| putative ATP-dependent RNA helicase DeaD [Fibrobacter succinogenes
subsp. succinogenes S85]
gi|302326490|gb|ADL25691.1| putative ATP-dependent RNA helicase DeaD [Fibrobacter succinogenes
subsp. succinogenes S85]
Length = 483
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 133/441 (30%), Positives = 213/441 (48%), Gaps = 77/441 (17%)
Query: 2 EEAKKKSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQE 61
EE K++ P L ++ + D D LP K L+ G + L PVQ ++
Sbjct: 27 EETKERVNPFLTPVKIIEPKNKLPDYTFDMLP---EEQKAILREHGWTELMPVQ----RK 79
Query: 62 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121
+I L RD+ + S TGSGKT +YALP++Q + R +AL+++PTR+L +QV++ F
Sbjct: 80 SIPYMLAARDMLVQSKTGSGKTGAYALPLLQVIV-RDHPYPQALILVPTRELCIQVQEEF 138
Query: 122 AAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPG 181
++ G IK + G+ Y+P+ ++ L+S V ++VATPG
Sbjct: 139 EKLSKGTG-------------------IKSVAIFGGVSYEPQ--IKALRSGVHVIVATPG 177
Query: 182 RLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFL 240
RLMDHI RG L + LV+DE D +L + P + ++ + +L
Sbjct: 178 RLMDHIQ--RGNVDLLSIRDLVLDEADEMLS---MGFYPDMQKIRK------------YL 220
Query: 241 PSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP--LFLTTGE 298
P A C + SAT+ Q LA+ + P FL+
Sbjct: 221 PKAIS-------C----------------TMYSATIPQTVKSLAR-EFQRPGADFLSLSY 256
Query: 299 TRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGEL 358
+ + LE C+ K + +L+ E C++F + L +L+ +G
Sbjct: 257 DKV-IANNLEHRYYTCDVMEKDSMTIKVLEYYNPESCMIFCNYKRDVSYLEQVLSGYG-- 313
Query: 359 RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKT 418
++ SG QS+R KTL AFR+ K+++L+ +D RG+DV+ V +V+ YD PA +
Sbjct: 314 -FEVGALSGDVAQSLREKTLNAFRDKKLKILICTDVAARGIDVDHVTHVIVYDHPADHEV 372
Query: 419 YIHRAGRTARAGQLGRCFTLL 439
Y+HR+GRTARAG+ G C +L+
Sbjct: 373 YVHRSGRTARAGRSGLCISLI 393
>gi|119185891|ref|XP_001243552.1| hypothetical protein CIMG_02993 [Coccidioides immitis RS]
gi|392870252|gb|EAS32044.2| ATP-dependent RNA helicase dbp6 [Coccidioides immitis RS]
Length = 809
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 128/387 (33%), Positives = 188/387 (48%), Gaps = 86/387 (22%)
Query: 2 EEAKKKSMPVLP-WMRSPVDVSLFEDCPLDHLP----CLDPRLKVALQNMGISSLFPVQV 56
E +++ S LP W+ PV VS P HLP L P+ LQ+ G S PVQ
Sbjct: 220 EHSQQPSYATLPEWLAHPVVVS-----PDTHLPFTELGLHPKQISTLQSQGYSKAMPVQS 274
Query: 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116
AV + D+C+++ TGSGKTLSY LP++ T+ V LR L+++PTR+L Q
Sbjct: 275 AVLPLALK-SEHRGDICVSAATGSGKTLSYVLPLISTIEPSPVSQLRGLIIVPTRELVKQ 333
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL----------------EAGICY 160
++ A GL +G AVG +++ DE S L+ + ++ +
Sbjct: 334 ARNTCELCAAGTGLRIGTAVGSTALKDEQSALMGQEQVYNFQAWKGKFSSVMTGSDWTNF 393
Query: 161 DPEDVLQELQS--------------AVDILVATPGRLMDHINATRGFTLEHLCYLVVDET 206
D ++ + E + +DILV+TPGRL+DHI +T+GFTL+HL +LV+DE
Sbjct: 394 DLQEYVAEAKECRGALPNHFAKTSPNIDILVSTPGRLVDHIRSTKGFTLKHLKWLVIDEA 453
Query: 207 DRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSL---KTIRRCGVERGFKDKP 263
D+LL E++Q W TVLQ E++ +D + +P SL +TIR
Sbjct: 454 DKLLNESFQEWSQTVLQAV----ESKGNDDAHPVPKDLCSLPKEQTIR------------ 497
Query: 264 YPRLVKMVLSATLTQDPNKLAQLDLHHP-----------------LFLTTGETR---YKL 303
K++LSAT+T+D KL L L +P L TR Y+L
Sbjct: 498 -----KIILSATMTRDITKLNSLRLINPKLVEVRALDNSKGMLPSLLTRPPNTRFEGYQL 552
Query: 304 PERL-ESYKLICESKLKPLYLVALLQS 329
P L E + + KPLYL+ L+ S
Sbjct: 553 PPTLNEMFVPAGDGSDKPLYLLELMAS 579
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 58/86 (67%)
Query: 369 QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 428
+ S KTL A+R+GKI V+V++D +RG+D+ +++V++YD P + +YIHR GRTAR
Sbjct: 675 NKSSTARKTLAAYRQGKIPVVVATDRASRGLDLPALDHVISYDVPTSVTSYIHRVGRTAR 734
Query: 429 AGQLGRCFTLLHKDEVKRFKKLLQKA 454
AG+ G +TL+ +E + F + K
Sbjct: 735 AGRRGVAWTLVAHNEGRWFSNEIVKG 760
>gi|385305508|gb|EIF49474.1| atp-dependent rna helicase dbp6 (dead-box protein 6) [Dekkera
bruxellensis AWRI1499]
Length = 528
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 138/443 (31%), Positives = 210/443 (47%), Gaps = 68/443 (15%)
Query: 33 PCLDPRLKVALQN-MGISSLFPVQVAVWQETIGPGLFER-------DLCINSPTGSGKTL 84
P LD +L L+ GI F VQV V Q + R D +N+ TGSGKTL
Sbjct: 74 PKLDEKLVSNLKTEFGIEEAFSVQVNVIQSIMKAVTKNRLDPRPYGDYLVNAATGSGKTL 133
Query: 85 SYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSV-GLAVGQSSIAD 143
+Y +P+V+ L NR V +R ++ PT+ L QV + L++ L G+S +
Sbjct: 134 AYLIPVVEALKNRXVPRVRCXILAPTKPLVNQVYLTLLKLTKGFDLNIIALRSGESLRIE 193
Query: 144 EISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVV 203
+ P DI+VATPGRL+DHI + L L +LVV
Sbjct: 194 HDRFVNNHP---------------------DIIVATPGRLVDHI-SKFDLDLSQLRFLVV 231
Query: 204 DETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKP 263
DE DRLL +++Q W ++ ++ E+ D+++F + K RC
Sbjct: 232 DEADRLLNQSFQNWCDVLVGKIEAEQEDD-QDSNSF----YNKFKI--RC---------- 274
Query: 264 YPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR------YKLPERLESYKLICESK 317
VK++LSATLT + KL+ L L P + + Y+LP LE Y +
Sbjct: 275 ----VKVILSATLTTNSEKLSHLKLFKPNLVVINNSEELVHELYQLPPHLEEYYINIPEA 330
Query: 318 L---KPLYLVALLQSLGE--EKCIVFTSSVEST---HRLCTLLNHFGELRIKIKEYSGLQ 369
L KPL + L + + ++FT S E+ RL LL+ ++ + +
Sbjct: 331 LSFYKPLIFLRFLLDQPDLIDHGLIFTKSNETAVRLSRLLQLLSSDSNQKLSVLCXNSAT 390
Query: 370 RQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA 429
+ S + K LK F + +L+++D M+RG++ + + VVNYD P K YIHR GRTARA
Sbjct: 391 KSSQKRKILKEF-DINGGILIATDLMSRGLNFDSIKFVVNYDLPLSTKEYIHRVGRTARA 449
Query: 430 GQLGRCFTL-LHKDEVKRFKKLL 451
+ GR F+ + + + FKKL+
Sbjct: 450 NKQGRAFSFCFGEGDFRWFKKLV 472
>gi|403217172|emb|CCK71667.1| hypothetical protein KNAG_0H02520 [Kazachstania naganishii CBS
8797]
Length = 754
Score = 161 bits (408), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 122/417 (29%), Positives = 195/417 (46%), Gaps = 74/417 (17%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-- 94
P LK L ++G + P+Q A TI L +D+ + TGSGKT ++ +PI++ L
Sbjct: 249 PVLK-GLAHLGYTKPSPIQSA----TIPVALQGKDVIAGAVTGSGKTAAFMIPIIERLLF 303
Query: 95 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPK 153
V R +V+ PTR+LA+Q+ DV I V GL+ GLAVG ++ + L RP
Sbjct: 304 KPSKVAMTRVIVLTPTRELAIQISDVAKKIGQFVSGLTFGLAVGGLNLRQQEQALKARP- 362
Query: 154 LEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA 213
DI++ATPGR +DHI + F ++ + LV+DE DR+L E
Sbjct: 363 --------------------DIVIATPGRFIDHIRNSASFNVDSVEILVLDEADRMLEEG 402
Query: 214 YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273
+Q L ++ T LPS +L + S
Sbjct: 403 FQDELKEIM---------------TMLPSKRQNL-----------------------LFS 424
Query: 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESY-KLICESKLKPLYLVALLQSL-- 330
AT+ L L L P+ + + + + + ++ LKP L L++ L
Sbjct: 425 ATMNSKIKSLVSLSLRRPVRIMIDPPKQAASKLTQEFVRIRKRDNLKPALLFNLIRKLDS 484
Query: 331 -GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 389
+++ +VF + E+ HRL +L G + + E G Q R +++ F+ + VL
Sbjct: 485 NAQKRIVVFVARKETAHRLRIILGLLG---MAVAELHGSLTQEQRLESVTRFKSLDVPVL 541
Query: 390 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 446
+ +D +RG+D+ + V+NYD P + Y+HR GRTARAG+ GR TL+ + +R
Sbjct: 542 ICTDLASRGLDIPKIEVVINYDMPKSHEIYLHRVGRTARAGREGRSVTLVGESSQER 598
>gi|154420635|ref|XP_001583332.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
gi|121917573|gb|EAY22346.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
Length = 449
Score = 161 bits (408), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 119/412 (28%), Positives = 193/412 (46%), Gaps = 62/412 (15%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-SNRAVRCLRALVVLPTRDLALQ 116
V ETI L +D+C + TGSGK++++ +PIVQ L + R + +AL++ PTR+LA Q
Sbjct: 33 VQAETIPKILSGQDICATAITGSGKSMAFLIPIVQKLLTFRGLPGPKALIMSPTRELAQQ 92
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDIL 176
+K V +A ++ L +G ++DE + P A DI+
Sbjct: 93 LKAVCDMLAAHCAITSTLVIG--GVSDEEQRELLTP-------------------APDII 131
Query: 177 VATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDA 236
+ TPGR +D I + LEHL + V+DE DRLL + +++ L T++ ++ A
Sbjct: 132 IGTPGRFIDSIFNAKVLKLEHLQFFVLDEADRLLGKGFESQLNTIVSQLPEKHQTLLFTA 191
Query: 237 STFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT 296
+ L L T + PY M L+ +TQ +F+ T
Sbjct: 192 T--LNDQVAKLATKIQKKSSEKISINPY-----MELNPNITQ-------------MFIKT 231
Query: 297 GETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG 356
+ +LP YLVAL +++ ++K +VF + H + L + G
Sbjct: 232 KKEERRLP-----------------YLVALCRNMCKDKTLVFFPTKALAHHVFLLFKNLG 274
Query: 357 ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYI 416
I E Q+ R++ ++ FRE K+Q L++SD RG+D+ + V+N+ P +
Sbjct: 275 ---IASAELHADLSQTARNEAIEQFRESKVQYLLASDLAARGIDIPDIEYVINFTIPNEL 331
Query: 417 KTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSL 468
+ YIHR GRT RAG+ G ++ E KR K +QK +IP +L
Sbjct: 332 ERYIHRTGRTGRAGKKGTAISMYVTPEEKRVMKKMQKNSPGEVQFMTIPDNL 383
>gi|330915742|ref|XP_003297149.1| hypothetical protein PTT_07463 [Pyrenophora teres f. teres 0-1]
gi|311330325|gb|EFQ94748.1| hypothetical protein PTT_07463 [Pyrenophora teres f. teres 0-1]
Length = 805
Score = 161 bits (407), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 117/440 (26%), Positives = 209/440 (47%), Gaps = 70/440 (15%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR--AV 99
L ++G + P+Q + + + +D+ + TGSGKT ++ +PI++ L R V
Sbjct: 289 GLASVGFTEPTPIQ----NKAVPIAMQGKDVVGGAETGSGKTAAFLIPILERLLYRPKKV 344
Query: 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 159
R + +PTR+LA+Q +V +A ++ L G S D+ + L RP
Sbjct: 345 PTTRVAIFMPTRELAVQCFNVATKLASFTDITFALMAGGFSTRDQEAVLKTRP------- 397
Query: 160 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 219
D+++ATPGR +DH++ T F +EHL LV+DE DR+L E +++ L
Sbjct: 398 --------------DVVIATPGRFIDHMHNTAAFQVEHLEILVLDEADRMLEEGFESQLN 443
Query: 220 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 279
+L T +P + + M+ SAT+T
Sbjct: 444 EIL---------------TTIPKSRQT-----------------------MLFSATMTSS 465
Query: 280 PNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESK--LKPLYLVALLQSLGEEKCIV 337
+KL ++ + P+ L ++ + + + + + K + YL+ + + + EK IV
Sbjct: 466 VDKLIRIGMDKPVRLMVDAKKHTVAGLTQEFVRLRQGKEDKRLAYLMYICEKIYTEKVIV 525
Query: 338 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTR 397
F + HR+ + G +K E G Q R ++++AFR GK L+++D +R
Sbjct: 526 FFRQKKEAHRVRVVFALCG---LKASELHGNMSQEQRIQSVEAFRSGKSAYLLATDVASR 582
Query: 398 GMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADND 457
G+D++ V+ V+NY+ P + Y+HR GRTARAG+ GR TL + + K K+ ++ + +
Sbjct: 583 GLDIKNVSTVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKVVKQAVKASRDQ 642
Query: 458 SCPIHSIPSSLIESLRPVYK 477
+ S + E+ R + K
Sbjct: 643 GAKVVSRQVPIEETDRWMKK 662
>gi|189208750|ref|XP_001940708.1| ATP-dependent RNA helicase DRS1 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187976801|gb|EDU43427.1| ATP-dependent RNA helicase DRS1 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 805
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 117/440 (26%), Positives = 208/440 (47%), Gaps = 70/440 (15%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR--AV 99
L ++G + P+Q + + + +D+ + TGSGKT ++ +PI++ L R V
Sbjct: 289 GLASVGFTEPTPIQ----NKAVPIAMQGKDVVGGAETGSGKTAAFLIPILERLLYRPKKV 344
Query: 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 159
R + +PTR+LA+Q +V +A ++ L G S D+ + L RP
Sbjct: 345 PTTRVAIFMPTRELAVQCFNVATKLASFTDITFALMAGGFSTRDQEAVLKTRP------- 397
Query: 160 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 219
D+++ATPGR +DH++ T F +EHL LV+DE DR+L E +++ L
Sbjct: 398 --------------DVVIATPGRFIDHMHNTAAFQVEHLEILVLDEADRMLEEGFESQLN 443
Query: 220 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 279
+L T +P + + M+ SAT+T
Sbjct: 444 EIL---------------TTIPKSRQT-----------------------MLFSATMTSS 465
Query: 280 PNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP--LYLVALLQSLGEEKCIV 337
+KL ++ + P+ L ++ + + + + + K YL+ + + + EK IV
Sbjct: 466 VDKLIRIGMDKPVRLMVDAKKHTVAGLTQEFVRLRQGKEDKRLAYLMYICEKIYTEKVIV 525
Query: 338 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTR 397
F + HR+ + G +K E G Q R ++++AFR GK L+++D +R
Sbjct: 526 FFRQKKEAHRVRVVFALCG---LKASELHGNMSQEQRIQSVEAFRSGKSAYLLATDVASR 582
Query: 398 GMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADND 457
G+D++ V+ V+NY+ P + Y+HR GRTARAG+ GR TL + + K K+ ++ + +
Sbjct: 583 GLDIKNVSTVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKVVKQAVKASRDQ 642
Query: 458 SCPIHSIPSSLIESLRPVYK 477
+ S + E+ R + K
Sbjct: 643 GAKVVSRQVPIEETDRWMKK 662
>gi|121700629|ref|XP_001268579.1| DEAD/DEAH box helicase, putative [Aspergillus clavatus NRRL 1]
gi|119396722|gb|EAW07153.1| DEAD/DEAH box helicase, putative [Aspergillus clavatus NRRL 1]
Length = 848
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 129/392 (32%), Positives = 186/392 (47%), Gaps = 79/392 (20%)
Query: 1 MEEAKKKSMPVLP-WMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVW 59
+EEA+K S LP W+ +P+ S + L +D L L G F VQ V
Sbjct: 224 LEEAEKPSYSSLPEWLANPLRESSDKRAQFSEL-GIDSNLLRVLDQNGYKEAFAVQSTVI 282
Query: 60 QETI-GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK 118
+ G DLCI++ TGSGKTLSY LP+V L +R L+V+PTR+L Q +
Sbjct: 283 PLLLQGSKRHAGDLCISAATGSGKTLSYVLPLVTALEPTPAPRMRGLIVVPTRELVKQAR 342
Query: 119 DVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPE--------------- 163
+ A GL VG AVG +I DE +R + CY PE
Sbjct: 343 EACELCAAGSGLRVGSAVGNVAIKDE-----QRTLMRIDQCYGPEISKQRQTVDLTGEDW 397
Query: 164 --------------------DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVV 203
+Q+ + VDIL+ TPGRL+DH+ T+GFTLEHL +LV+
Sbjct: 398 TKFNLLDYIAEAGDLSESLPGYIQKAEPNVDILICTPGRLVDHLRYTKGFTLEHLEWLVI 457
Query: 204 DETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSL-KTIRRCGVERGFKDK 262
DE DRLL E++Q W+ V+ S + P AFGS + + G+ K+
Sbjct: 458 DEADRLLNESFQEWVDVVMN----------SLDARKSPKAFGSSGQFMAELGLPIQVKE- 506
Query: 263 PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL---------------TTGETRYKLPERL 307
PR K++LSAT+T+D +KL L L +P + + ++ +P L
Sbjct: 507 --PR--KVILSATMTRDVSKLNSLRLANPKLVIVSSADPTSTEDGGHVKSDEQFTIPRTL 562
Query: 308 ESYKL-ICESKLKPLYLVALLQS----LGEEK 334
+ Y + + + KPLYL++LL+S L EE+
Sbjct: 563 KEYSVSVGDGSQKPLYLLSLLRSHINVLAEEQ 594
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 74/123 (60%), Gaps = 1/123 (0%)
Query: 335 CIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 393
++FT S ES RL L++ L ++ + S KTL A+R GKI ++V++D
Sbjct: 676 VLIFTKSSESASRLSRLISLLDPSLANQVGTIIKSNKSSASRKTLTAYRRGKISIIVATD 735
Query: 394 AMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQK 453
+RG+D++ + +VVNYD P + TY+HR GRTARAG+ G +TL+ E + F+ + K
Sbjct: 736 RASRGLDLQSLTHVVNYDVPPSVTTYVHRVGRTARAGKKGSAWTLVAHREGRWFENEISK 795
Query: 454 ADN 456
A +
Sbjct: 796 ASD 798
>gi|71679691|gb|AAI00035.1| Ddx51 protein [Danio rerio]
Length = 386
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 94/227 (41%), Positives = 131/227 (57%), Gaps = 31/227 (13%)
Query: 11 VLP-WMRSPVDVSLFEDC-----PLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQ---E 61
VLP W+ P DV + +D + +P + P L LQ GI S FPVQ V E
Sbjct: 168 VLPQWLSQP-DV-IQKDIKSNLISISEVPGICPTLLRKLQTNGIQSFFPVQAEVIPAILE 225
Query: 62 TIGPGLF-------ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114
++G GL RD+C+++PTGSGKTL++ +P+VQ LS R VR +RAL VLPT++LA
Sbjct: 226 SVGSGLLVGPGGYRPRDVCVSAPTGSGKTLAFVIPVVQALSKRVVRQVRALAVLPTKELA 285
Query: 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVD 174
QV VF+A L V + GQ S A E + L ++ G+ + S D
Sbjct: 286 QQVSKVFSAYTEGSSLKVVMITGQKSFAAEQTAL---SEIRGGVSH----------SLAD 332
Query: 175 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 221
I+VATPGRL+DHIN F+L+HL +L++DE DR++ +Q+WL V
Sbjct: 333 IVVATPGRLVDHINKNSSFSLQHLRFLIIDEADRMIDSMHQSWLSQV 379
>gi|392578929|gb|EIW72056.1| hypothetical protein TREMEDRAFT_41472 [Tremella mesenterica DSM
1558]
Length = 491
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 118/398 (29%), Positives = 192/398 (48%), Gaps = 68/398 (17%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P+QV E I L RD+ + TGSGKT +++LPI+Q L + AL++ PTR+
Sbjct: 71 PIQV----EAIPSALQGRDVIGLAQTGSGKTAAFSLPILQKLWENP-QPFFALILAPTRE 125
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA Q+ ++ +G+ + VG + + L KRP
Sbjct: 126 LAYQISQQVTSLGSPLGVRTAVIVGGMDMMSQSIALSKRPH------------------- 166
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
++VATPGRLMDH+ T+GF+L+++ +LV+DE DRLL + + +L++ +
Sbjct: 167 --VIVATPGRLMDHLENTKGFSLKNVKFLVMDEADRLLDMDFGPIIDKILKVIPKER--- 221
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
+T+L SAT+T KL + L+ P+
Sbjct: 222 ----NTYL-------------------------------FSATMTTKVAKLQRASLNKPV 246
Query: 293 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352
+ T+Y L + L+ K K +L+ ++ L I+FT +V RL +L
Sbjct: 247 RVEVA-TKYSTVSTLLQHYLLLPLKAKDTHLLYIVTELSSCSMIIFTRTVVDAQRLSIML 305
Query: 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 412
G I + G QS+R +L F+ G +LV++D +RG+D+ V+ VVNYD
Sbjct: 306 RRLGFPAIPLH---GQMSQSLRLASLNKFKSGGRSILVATDVASRGLDIPLVDLVVNYDM 362
Query: 413 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
P K Y+HR GRTARAG+ G+ T++ + +V+ +++
Sbjct: 363 PINSKDYVHRVGRTARAGRSGKSITMVTQYDVEILQRI 400
>gi|60416850|emb|CAI59782.1| hypothetical protein [Homo sapiens]
Length = 268
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 91/230 (39%), Positives = 131/230 (56%), Gaps = 17/230 (7%)
Query: 263 PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG--------------ETRYKLPERLE 308
P L K++ SATLTQ+P KL QL LH P +TG +Y P L
Sbjct: 22 PQMPLQKLLFSATLTQNPEKLQQLGLHQPRLFSTGLAHRGLEDTDGDGDSGKYAFPVGLT 81
Query: 309 SYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL 368
+ + C KPL ++ L+ +G + + FT+S E++HRL L+ FG + + E+S
Sbjct: 82 HHYVPCSLSSKPLVVLHLVLEMGFSRVLCFTNSRENSHRLFLLVQAFGG--VDVAEFSSR 139
Query: 369 QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIH-RAGRTA 427
R LK F +GKIQ+L+S+DA RG+DV+GV VVNYD P Y++TY+H R GRTA
Sbjct: 140 YGPGQRRMILKQFEQGKIQLLISTDATARGIDVQGVELVVNYDAPQYLRTYVHRRVGRTA 199
Query: 428 RAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYK 477
RAG+ G+ FTLL K + +R ++L +A H + S L++ L P Y+
Sbjct: 200 RAGKTGQAFTLLLKVQERRLLRMLTEAGAPELQRHELSSKLLQPLVPRYE 249
>gi|226295059|gb|EEH50479.1| ATP-dependent RNA helicase dbp6 [Paracoccidioides brasiliensis
Pb18]
Length = 852
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 106/292 (36%), Positives = 155/292 (53%), Gaps = 54/292 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQ-----ETIGPGLFERDLCINSPTGSGKTLSYALP 89
++PRL L+ G+ FP+Q AV + E PG DLCI++ TGSGKTL+Y LP
Sbjct: 266 VNPRLVSILEKRGLIRPFPIQAAVLELLFKGENRHPG----DLCISAATGSGKTLAYTLP 321
Query: 90 IVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
+V+ + A+ LR LV++PTR+L Q +D + GL +G AVG +S+ +E + LI
Sbjct: 322 MVEGIEQSAIPQLRGLVIVPTRELVKQARDACELCSSGTGLRIGTAVGTTSLKEEQALLI 381
Query: 150 KRPKL----------------EAGICYDPEDVLQELQSA--------------VDILVAT 179
K +L E ++ ++ + E + +DIL++T
Sbjct: 382 KLDQLYSPFSSQTLSEQSMSSEDWAAFNLQEYIAEANVSHKALPNHVTTSSPCIDILIST 441
Query: 180 PGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTF 239
PGRL+DHI T+GFTLEHL +LVVDE DRLL E++Q W+ VL + + S + F
Sbjct: 442 PGRLVDHIRCTQGFTLEHLEWLVVDEADRLLNESFQEWIKVVLPALEMERIDSNSKSGIF 501
Query: 240 LPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 291
L + G C V R +L K++LSAT+T+D KL L L +P
Sbjct: 502 L-NQLG-------CQVRRR-------QLQKIILSATMTRDIPKLISLRLRNP 538
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 71/126 (56%), Gaps = 6/126 (4%)
Query: 336 IVFTSSVESTHRLCTLLN-HFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394
+VFT S ES RL LL L +I + + + +TL A+R GK+ +++++D
Sbjct: 677 LVFTKSSESASRLARLLALMHPPLAKRIGTLTKSNKSTTSRRTLSAYRNGKVSIVIATDC 736
Query: 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 454
+RG+D+ + +VVNYD PA + +YIHR GRTARAG G +T + E + F + K
Sbjct: 737 ASRGLDLPSLTHVVNYDVPASLTSYIHRVGRTARAGNSGSAWTFVAHREGRWFSNEIMK- 795
Query: 455 DNDSCP 460
CP
Sbjct: 796 ----CP 797
>gi|159131798|gb|EDP56911.1| DEAD/DEAH box helicase, putative [Aspergillus fumigatus A1163]
Length = 856
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 128/386 (33%), Positives = 187/386 (48%), Gaps = 79/386 (20%)
Query: 2 EEAKKKSMPVLP-WMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQ 60
EE +K + LP W+ +PV + L L+V L++ G F VQ
Sbjct: 225 EETEKPNYSSLPAWLANPVREPASKRARFSELGINSNLLRV-LEDHGYKEAFAVQ----- 278
Query: 61 ETIGPGLFER------DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114
T+ P L + DLCI++ TGSGKTLSY LP+V L +R L+V+PTR+L
Sbjct: 279 STVIPLLLQGLRRHPGDLCISAATGSGKTLSYVLPLVTALKPTPAPRMRGLIVVPTRELV 338
Query: 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIK-----RPKL--------------- 154
Q ++ A GL +G AVG +I DE L++ P+L
Sbjct: 339 KQAREACELCATGSGLRIGSAVGNVAIKDEQRTLMRVDQCYGPELSKQRQTVDLTGEDWT 398
Query: 155 ---------EAGICYDP-EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVD 204
EAG +P +Q + +DIL+ TPGRL+DH+ T+GFTLEHL +LV+D
Sbjct: 399 NFSLMNYLAEAGELSEPLPGYVQRAEPNIDILICTPGRLVDHLRYTKGFTLEHLQWLVID 458
Query: 205 ETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSL-KTIRRCGVERGFKDKP 263
E DRLL E++Q W+ V++ S + P FGS K + G+ ++
Sbjct: 459 EADRLLNESFQEWVDVVMK----------SLDARKAPKTFGSSGKFMAELGLPIQSRE-- 506
Query: 264 YPRLVKMVLSATLTQDPNKLAQLDLHHPLFL-------------------TTGETRYKLP 304
PR K++LSAT+T+D +KL L L +P + TT + ++ LP
Sbjct: 507 -PR--KVILSATMTRDISKLNSLRLANPKLVIIGSAEPTATEEAEHDGVPTTSDEQFTLP 563
Query: 305 ERLESYKL-ICESKLKPLYLVALLQS 329
L+ Y + + + KPLYL+ LLQS
Sbjct: 564 STLKEYSVSVGDGSQKPLYLLQLLQS 589
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 71/123 (57%), Gaps = 1/123 (0%)
Query: 335 CIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 393
++FT S ES RL L++ L ++ + S KTL A+R GKI ++V++D
Sbjct: 692 VLIFTKSSESASRLSRLISLLDPSLADRVGTIIKSNKSSASRKTLTAYRRGKISIIVATD 751
Query: 394 AMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQK 453
+RG+D+ + +VVNYD P + TY+HR GRTARAG+ G +TL+ E + F + K
Sbjct: 752 RASRGLDLVSLTHVVNYDVPPSVTTYVHRVGRTARAGKEGSAWTLVAHREGRWFVNEISK 811
Query: 454 ADN 456
+
Sbjct: 812 GSD 814
>gi|70996614|ref|XP_753062.1| DEAD/DEAH box helicase [Aspergillus fumigatus Af293]
gi|66850697|gb|EAL91024.1| DEAD/DEAH box helicase, putative [Aspergillus fumigatus Af293]
Length = 856
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 128/386 (33%), Positives = 186/386 (48%), Gaps = 79/386 (20%)
Query: 2 EEAKKKSMPVLP-WMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQ 60
EE +K + LP W+ +PV + L L+V L++ G F VQ
Sbjct: 225 EETEKPNYSSLPAWLANPVREPASKRARFSELGINSNLLRV-LEDHGYKEAFAVQ----- 278
Query: 61 ETIGPGLFER------DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114
T+ P L + DLCI++ TGSGKTLSY LP+V L +R L+V+PTR+L
Sbjct: 279 STVIPLLLQGLRRHPGDLCISAATGSGKTLSYVLPLVTALKPTPAPRMRGLIVVPTRELV 338
Query: 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIK-----RPKL--------------- 154
Q ++ A GL +G AVG +I DE L++ P+L
Sbjct: 339 KQAREACELCATGSGLRIGSAVGNVAIKDEQRTLMRVDQCYGPELSKQRQTVDLTGEDWT 398
Query: 155 ---------EAGICYDP-EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVD 204
EAG +P +Q + +DIL+ TPGRL+DH+ T+GFTLEHL +LV+D
Sbjct: 399 NFSLMNYLAEAGELSEPLPGYVQRAEPNIDILICTPGRLVDHLRYTKGFTLEHLQWLVID 458
Query: 205 ETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSL-KTIRRCGVERGFKDKP 263
E DRLL E++Q W+ V+ S + P FGS K + G+ ++
Sbjct: 459 EADRLLNESFQEWVDVVMN----------SLDARKAPKTFGSSGKFMAELGLPIQSRE-- 506
Query: 264 YPRLVKMVLSATLTQDPNKLAQLDLHHPLFL-------------------TTGETRYKLP 304
PR K++LSAT+T+D +KL L L +P + TT + ++ LP
Sbjct: 507 -PR--KVILSATMTRDISKLNSLRLANPKLVIIGSAEPTATEEAEHDGVPTTSDEQFTLP 563
Query: 305 ERLESYKL-ICESKLKPLYLVALLQS 329
L+ Y + + + KPLYL+ LLQS
Sbjct: 564 STLKEYSVSVGDGSQKPLYLLQLLQS 589
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 71/123 (57%), Gaps = 1/123 (0%)
Query: 335 CIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 393
++FT S ES RL L++ L ++ + S KTL A+R GKI ++V++D
Sbjct: 692 VLIFTKSSESASRLSRLISLLDPSLADRVGTIIKSNKSSASRKTLTAYRRGKISIIVATD 751
Query: 394 AMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQK 453
+RG+D+ + +VVNYD P + TY+HR GRTARAG+ G +TL+ E + F + K
Sbjct: 752 RASRGLDLVSLTHVVNYDVPPSVTTYVHRVGRTARAGKEGSAWTLVAHREGRWFVNEISK 811
Query: 454 ADN 456
+
Sbjct: 812 GSD 814
>gi|84999282|ref|XP_954362.1| ATP-dependent RNA helicase [Theileria annulata]
gi|65305360|emb|CAI73685.1| ATP-dependent RNA helicase, putative [Theileria annulata]
Length = 503
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 126/462 (27%), Positives = 213/462 (46%), Gaps = 65/462 (14%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFER------DLCINSPTGSGKTLSYAL 88
P L ++ I+ FPVQ I ++ D I +PTG GKTL YAL
Sbjct: 39 FQPHLMNVIREKKINQFFPVQEKSIPLLINNTYRDKYSVLSCDFIITAPTGQGKTLCYAL 98
Query: 89 PIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
P++ + N L +L+++P+R+L Q+ +VF+ + +++ D
Sbjct: 99 PLIYNILNLKENRLLSLIIVPSRELVKQIYEVFSWFTDS----------KTTGHD----- 143
Query: 149 IKRPKLEAGICYDPEDVLQELQSAVD----ILVATPGRLMDH-INATRGF--TLEHLCYL 201
+K P L+A + Y ++ V+ I + TPG L+++ ++ R F T EHL ++
Sbjct: 144 LKGPSLKARVFYGDRSFVKCHDMLVNDPPHIAICTPGVLVEYSVDFQREFYDTFEHLKWI 203
Query: 202 VVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKD 261
V+DE D +L + + W+ V+ L S S + + GV +
Sbjct: 204 VIDEVDTMLNQTFYEWVDVVVDLV----------------SRLKSKEPNQSLGVPQ---- 243
Query: 262 KPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESK---L 318
K+++SAT+ + + L+L+ P+ L E+ YKLPE L+ ++C ++ L
Sbjct: 244 -------KILVSATVPLKSHDIELLELNRPILLRLKESIYKLPENLKQSYVVCSNRPVSL 296
Query: 319 KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTL-----LNHFGELRIKIKEYSGLQRQSV 373
+ L L+A L +VF S V++ H++ L L H G K E +G Q
Sbjct: 297 EFLKLMAFLYKDVTGNVLVFFSKVQTCHKITRLMQIYNLKHGGGF--KAIELTGRMPQKQ 354
Query: 374 RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 433
R+ +K +++ L+ SD +RGMD+ N VV+YD P + +YIHRAGRTAR G
Sbjct: 355 RNNAIKTYKDEDRVCLLCSDVASRGMDLSNTNVVVSYDFPNKLSSYIHRAGRTARGNNKG 414
Query: 434 RCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPV 475
+ K+F + K D + I ++ + + V
Sbjct: 415 TFCVFVSNQTEKKFHNFMNKLKIDEEKLKKIELDIVLNQKKV 456
>gi|451996880|gb|EMD89346.1| hypothetical protein COCHEDRAFT_1141477 [Cochliobolus
heterostrophus C5]
Length = 518
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 112/398 (28%), Positives = 184/398 (46%), Gaps = 66/398 (16%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101
A +N+ ++ P+Q + I L RD+ + TGSGKT ++ LPI+Q L + +
Sbjct: 103 ACENLKFTNPTPIQA----QAIPLALQGRDVIGLAETGSGKTAAFVLPILQALLEKQ-QS 157
Query: 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD 161
L L++ PTR+LA Q+ A+ + + VG + + L K+P
Sbjct: 158 LFGLILAPTRELAYQIAQQVDALGSIINVKCATLVGGMDMVPQAIALSKKPH-------- 209
Query: 162 PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 221
I+VATPGRL+DH+ T+GF+L+HL Y+V+DE DRLL + L +
Sbjct: 210 -------------IIVATPGRLLDHLENTKGFSLKHLKYMVLDEADRLLDLDFGPVLDKI 256
Query: 222 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 281
L++ + + + + SAT++
Sbjct: 257 LKVLPREGRHTY-------------------------------------LFSATMSSKVE 279
Query: 282 KLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 341
L + L +P+ ++ + +++ L + K K LYL+ LL I+F+ +
Sbjct: 280 SLQRAALQNPVRVSISSSSHQVVSTLLQRYIFLPHKYKDLYLIHLLNDNIGHPTIIFSRT 339
Query: 342 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 401
V T R+ LL G I + G QS R L F+ +LV++D RG+D+
Sbjct: 340 VNETQRIAILLRTLGFGAIPLH---GQLSQSARLGALNKFKTQSRDILVATDVAARGLDI 396
Query: 402 EGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439
V+ VVN+D P+ +TY+HR GRTARAG+ G+ + +
Sbjct: 397 PAVDLVVNFDLPSDSQTYVHRVGRTARAGKSGKAVSFV 434
>gi|396488909|ref|XP_003842973.1| similar to ATP-dependent RNA helicase DRS1 [Leptosphaeria maculans
JN3]
gi|312219551|emb|CBX99494.1| similar to ATP-dependent RNA helicase DRS1 [Leptosphaeria maculans
JN3]
Length = 811
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 115/424 (27%), Positives = 199/424 (46%), Gaps = 70/424 (16%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR--AV 99
L +G S P+Q + I + +D+ + TGSGKT ++ +PI++ L R V
Sbjct: 294 GLAAVGFSEPTPIQ----NKAIPIAMQGKDVVGGAETGSGKTAAFLIPILERLLYRPKKV 349
Query: 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 159
R + +PTR+LA+Q +V +A ++ L G S D+ + L RP
Sbjct: 350 PTTRVAIFMPTRELAVQCFNVATKLASFTDITFALMAGGFSTKDQEAVLKTRP------- 402
Query: 160 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 219
D+++ATPGR +DH++ T F +EHL LV+DE DR+L E +++ L
Sbjct: 403 --------------DVVIATPGRFIDHMHNTAAFQVEHLEILVLDEADRMLEEGFESQLN 448
Query: 220 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 279
+L T +P S +T M+ SAT+T
Sbjct: 449 EIL---------------TTIPK---SRQT--------------------MLFSATMTST 470
Query: 280 PNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESK--LKPLYLVALLQSLGEEKCIV 337
++L ++ + P+ L ++ + + + + + K + YL+ + + E+ I+
Sbjct: 471 VDRLIRIGMDKPVRLMVDAKKHTVKGLTQEFIRLRQGKEDRRLAYLMYICEKFYNERVII 530
Query: 338 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTR 397
F + HR+ + G +K E G Q R + ++AFR GK L+++D +R
Sbjct: 531 FFRQKKEAHRVRVVFALCG---LKASELHGNMSQEQRIQAVEAFRSGKSAYLLATDVASR 587
Query: 398 GMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADND 457
G+D++ V+ V+NY+ P Y+HR GRTARAG+ GR TL + + K K+ ++ A +
Sbjct: 588 GLDIKNVSTVINYEAPQTHDIYMHRVGRTARAGREGRACTLAAEPDRKVVKQAVKAARDQ 647
Query: 458 SCPI 461
+
Sbjct: 648 GAKV 651
>gi|225681311|gb|EEH19595.1| ATP-dependent RNA helicase DBP6 [Paracoccidioides brasiliensis
Pb03]
Length = 836
Score = 158 bits (400), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 106/292 (36%), Positives = 155/292 (53%), Gaps = 54/292 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQ-----ETIGPGLFERDLCINSPTGSGKTLSYALP 89
++PRL L+ G FP+Q AV + E PG DLCI++ TGSGKTL+YALP
Sbjct: 272 VNPRLVSILEKRGFIRPFPIQAAVLELLFKGENRHPG----DLCISAATGSGKTLAYALP 327
Query: 90 IVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
+V+ + A+ LR LV++PTR+L Q +D + GL +G AVG +S+ +E + LI
Sbjct: 328 MVEGIEQSAIPKLRGLVIVPTRELVKQARDACELCSSGTGLRIGTAVGTTSLKEEQALLI 387
Query: 150 KRPKL----------------EAGICYDPEDVLQELQSA--------------VDILVAT 179
K +L E ++ ++ + E + +DIL++T
Sbjct: 388 KLDQLYSPFSSQTLSEQSMSSEDWAAFNLQEYIAEANVSHKALPNHVTTSSPCIDILIST 447
Query: 180 PGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTF 239
PGRL+DHI T+GFTLEHL +LVVDE DRLL E++Q W+ VL + + S + F
Sbjct: 448 PGRLVDHIRCTQGFTLEHLEWLVVDEADRLLNESFQEWIKVVLPALEMERIDSNSKSGIF 507
Query: 240 LPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 291
L + G + RR +L K++LSAT+T+D KL L L +P
Sbjct: 508 L-NQLG-FQIHRR-------------QLQKIILSATMTRDIPKLISLRLRNP 544
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 60/102 (58%), Gaps = 4/102 (3%)
Query: 336 IVFTSSVESTHRLCTLLN-HFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394
+VFT S ES RL LL L +I + + + +TL A+R GK+ +++++D
Sbjct: 683 LVFTKSSESASRLARLLALMHPPLAKRIGTLTKSNKSTTSRRTLSAYRNGKVSIVIATDC 742
Query: 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRA-GRTARA--GQLG 433
+RG+D+ + +VVNYD PA + +YIHR GR AR GQ G
Sbjct: 743 ASRGLDLPSLTHVVNYDVPASLTSYIHRVDGRLARGTPGQHG 784
>gi|451847806|gb|EMD61113.1| hypothetical protein COCSADRAFT_192893 [Cochliobolus sativus
ND90Pr]
Length = 518
Score = 158 bits (400), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 112/398 (28%), Positives = 184/398 (46%), Gaps = 66/398 (16%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101
A +N+ ++ P+Q + I L RD+ + TGSGKT ++ LPI+Q L + +
Sbjct: 103 ACENLKFTNPTPIQA----QAIPLALEGRDVIGLAETGSGKTAAFVLPILQALLEKQ-QS 157
Query: 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD 161
L L++ PTR+LA Q+ A+ + + VG + + L K+P
Sbjct: 158 LFGLILAPTRELAYQIAQQVDALGSIINVKCATLVGGMDMVPQAIALSKKPH-------- 209
Query: 162 PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 221
I+VATPGRL+DH+ T+GF+L+HL Y+V+DE DRLL + L +
Sbjct: 210 -------------IIVATPGRLLDHLENTKGFSLKHLKYMVLDEADRLLDLDFGPVLDKI 256
Query: 222 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 281
L++ + + + + SAT++
Sbjct: 257 LKVLPREGRHTY-------------------------------------LYSATMSSKVE 279
Query: 282 KLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 341
L + L +P+ ++ + +++ L + K K LYL+ LL I+F+ +
Sbjct: 280 SLQRAALQNPVRVSISSSSHQVVSTLLQRYIFLPHKYKDLYLIHLLNDNIGHPTIIFSRT 339
Query: 342 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 401
V T R+ LL G I + G QS R L F+ +LV++D RG+D+
Sbjct: 340 VNETQRIAILLRTLGFGAIPLH---GQLSQSARLGALNKFKTQSRDILVATDVAARGLDI 396
Query: 402 EGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439
V+ VVN+D P+ +TY+HR GRTARAG+ G+ + +
Sbjct: 397 PAVDLVVNFDLPSDSQTYVHRVGRTARAGKSGKAVSFV 434
>gi|261191654|ref|XP_002622235.1| DEAD/DEAH box helicase [Ajellomyces dermatitidis SLH14081]
gi|239590001|gb|EEQ72644.1| DEAD/DEAH box helicase [Ajellomyces dermatitidis SLH14081]
Length = 847
Score = 158 bits (399), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 104/294 (35%), Positives = 156/294 (53%), Gaps = 48/294 (16%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFER--DLCINSPTGSGKTLSYALPIVQ 92
L+ L LQ G ++ FP+Q AV E +G G + DLCI++ TGSGKTL+YALP+V
Sbjct: 267 LNKNLISILQKRGYTTAFPIQAAVL-ELLGNGEHQHSGDLCISAATGSGKTLAYALPLVA 325
Query: 93 TLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
+ + LR LVV+PTR+L Q +D A GL +G AVG +S+ +E + LIK
Sbjct: 326 GIEQLPLARLRGLVVVPTRELVKQARDACELCATRTGLRIGTAVGTASLKEEQALLIKHD 385
Query: 153 KL----------------EAGICYDPEDVLQELQSA--------------VDILVATPGR 182
+L E+ ++ ++ + E++ + +DIL+ TPGR
Sbjct: 386 QLYSPSNRRIGNGHQMIAESWASFNFQEYITEVERSHSAFPDHVTTPSPNIDILICTPGR 445
Query: 183 LMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPS 242
L+DHI +T+GF+LEHL +LV+DE DRLL E++Q W+ V+ + + LP
Sbjct: 446 LVDHIRSTKGFSLEHLEWLVIDEADRLLNESFQEWVEVVIPALERVRVDVAGKSGRILPD 505
Query: 243 AFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT 296
+ C PRL K++LSAT+T+D KL L L +P ++T
Sbjct: 506 LGWQI-----C----------KPRLRKIILSATMTRDIAKLNSLRLQNPKLVST 544
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 72/134 (53%), Gaps = 20/134 (14%)
Query: 335 CIVFTSSVESTHRLCTLL--------NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 386
+VFT S ES RL LL N G L + + S KT+ A+R GK+
Sbjct: 674 VLVFTKSSESASRLARLLVLMHPPFANRIGTL-------AKSSKSSTSRKTISAYRNGKL 726
Query: 387 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 446
+++++D +RG+D+ + +VV+YD P + +YIHR GRTARAG+ G +TL+ E +
Sbjct: 727 SIVIATDRASRGLDLPSLTHVVSYDIPTSLTSYIHRVGRTARAGRSGSAWTLVAHREGRW 786
Query: 447 FKKLLQKADNDSCP 460
F + K CP
Sbjct: 787 FANEIVK-----CP 795
>gi|67516711|ref|XP_658241.1| hypothetical protein AN0637.2 [Aspergillus nidulans FGSC A4]
gi|40746024|gb|EAA65180.1| hypothetical protein AN0637.2 [Aspergillus nidulans FGSC A4]
gi|259489096|tpe|CBF89085.1| TPA: DEAD/DEAH box helicase, putative (AFU_orthologue;
AFUA_1G16940) [Aspergillus nidulans FGSC A4]
Length = 853
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 126/377 (33%), Positives = 176/377 (46%), Gaps = 78/377 (20%)
Query: 1 MEEAKKKSMPVLP-WMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVW 59
+EEA+K + LP W+ +PV S L ++P+L L+ G F VQ AV
Sbjct: 224 VEEAEKPTYSSLPPWLANPVRASAETRAKFSDL-GIEPKLLRVLEVNGYKEAFAVQAAVI 282
Query: 60 QETI-GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK 118
+ GP D+C+++ TGSGKTLSY LP+V L LR L+V+PTR+L Q +
Sbjct: 283 PLLLKGPNNHTGDICVSAATGSGKTLSYVLPLVTELEQIPAPRLRGLIVVPTRELVKQAR 342
Query: 119 DVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV------------- 165
+ GL VG AVG +I DE L+ ++E Y PE V
Sbjct: 343 EACEFCTAGTGLRVGSAVGNVAIKDEQRSLM---RIEH--VYSPESVESRRKAELTGEEW 397
Query: 166 ----LQEL------------------QSAVDILVATPGRLMDHINATRGFTLEHLCYLVV 203
LQ+ + VDIL+ TPGRL+DHI T+GFTL+HL +LV+
Sbjct: 398 ADFSLQDYISNTTDLGETLPGYIHRGEPNVDILICTPGRLVDHIRYTKGFTLKHLQWLVI 457
Query: 204 DETDRLLREAYQAWLPTVLQ-LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDK 262
DE DRLL E++Q W+ V+Q L F + FL SL+T
Sbjct: 458 DEADRLLNESFQEWVDVVMQSLDARKAYGAFGPSGRFLADLGMSLQTKE----------- 506
Query: 263 PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG------------------ETRYKLP 304
PR K+VLSAT+T+D +KL L L +P + G + R+ LP
Sbjct: 507 --PR--KVVLSATMTKDVSKLNSLRLTNPRLVVVGGSDQTTTADDESGVVVHADERFTLP 562
Query: 305 ERLESYKL-ICESKLKP 320
L Y + + + + KP
Sbjct: 563 TTLREYSIAVGDGEHKP 579
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 58/88 (65%)
Query: 369 QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 428
+ S KTL A+R+GKI +++++D +RG+D++ + +V+NYD PA I TY+HR GRTAR
Sbjct: 719 NKSSASRKTLSAYRQGKISIIIATDRASRGLDLQSLTHVINYDVPASITTYVHRVGRTAR 778
Query: 429 AGQLGRCFTLLHKDEVKRFKKLLQKADN 456
AG G +TL+ E + F + K N
Sbjct: 779 AGNEGSAWTLVAHREGRWFTNEISKGSN 806
>gi|145300478|ref|YP_001143319.1| DEAD-box ATP dependent DNA helicase [Aeromonas salmonicida subsp.
salmonicida A449]
gi|418362912|ref|ZP_12963530.1| DEAD-box ATP dependent DNA helicase [Aeromonas salmonicida subsp.
salmonicida 01-B526]
gi|142853250|gb|ABO91571.1| ATP-dependent RNA helicase, DEAD box family [Aeromonas salmonicida
subsp. salmonicida A449]
gi|356685918|gb|EHI50537.1| DEAD-box ATP dependent DNA helicase [Aeromonas salmonicida subsp.
salmonicida 01-B526]
Length = 417
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 118/421 (28%), Positives = 188/421 (44%), Gaps = 72/421 (17%)
Query: 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQT 93
L PRL+ L +G ++ P+Q I L RDL + TG+GKT ++ LP+++
Sbjct: 10 ALSPRLQQTLSELGYAAPTPIQA----RAIPVILTGRDLMAGAQTGTGKTAAFVLPLLEQ 65
Query: 94 L----SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
L ++ R +RALV++PTR+LA+QV D GL+ L G SIA ++
Sbjct: 66 LMQHPASDTARPIRALVLVPTRELAVQVFDSVVRYGQGTGLTSALVYGGVSIAAQV---- 121
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209
+ LQ+ VD+L+ATPGRL+DH+ +LEHL +LV DE DR+
Sbjct: 122 -----------------EALQAGVDLLIATPGRLLDHLRQG-ALSLEHLSHLVFDEADRM 163
Query: 210 LREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVK 269
L + + +L+ +D + A T + F + + R P L++
Sbjct: 164 LDMGFMDEIKALLKQIPADRQTLLFSA-TCDDNLFALSRVLLRD-----------PELIE 211
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329
+ P ++ ++ GE + L E L K
Sbjct: 212 VA--------PRNTTAAEVEQRVYAVDGERKVALVEHLIKVK------------------ 245
Query: 330 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 389
G ++F+ + + +L G+ I + G Q R K L AFR G +Q L
Sbjct: 246 -GWAPVLIFSRTRQGADKLA---QQLGKAGINALAFHGDLSQGAREKVLLAFRAGTLQAL 301
Query: 390 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKK 449
V++D RG+D+ +N V+N + P + Y+HR GRT RAG G TL ++ +K
Sbjct: 302 VATDVAARGLDILDLNYVINLEFPFVAEDYVHRIGRTGRAGNKGLAITLFSPEDAPLLEK 361
Query: 450 L 450
+
Sbjct: 362 V 362
>gi|225561306|gb|EEH09586.1| ATP-dependent RNA helicase DBP6 [Ajellomyces capsulatus G186AR]
Length = 843
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 108/321 (33%), Positives = 165/321 (51%), Gaps = 53/321 (16%)
Query: 14 WMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFER--D 71
W+ P + + +L ++ L L+ G + FP+Q AV E +G G D
Sbjct: 228 WLTQPFAAATLSERNFSNL-GVNKTLVSVLERRGYTEAFPIQAAVL-ELLGTGKHRHSGD 285
Query: 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLS 131
LCI++ TGSGKTL+YALP+V + + LR LVV+PTR+L Q ++ A GL
Sbjct: 286 LCISAATGSGKTLAYALPLVAGIEQSSYPRLRGLVVVPTRELVWQAREACELCATGTGLR 345
Query: 132 VGLAVGQSSIADEISELIKRPKL----------------EAGICYDPEDVLQELQS---- 171
+G AVG +S+ +E + LIK +L ++ ++ ++ + E +S
Sbjct: 346 IGTAVGTASLNEEQASLIKHEQLYSPCTDQIKNIQQMSADSWTSFNIQEYISEAESSPSA 405
Query: 172 ----------AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 221
+VDIL+ TPGRL+ HI +T+GFTL HL +LV+DE DRLL E++Q W+ V
Sbjct: 406 FPNHVAIPSPSVDILICTPGRLVQHIKSTKGFTLGHLEWLVIDEADRLLNESFQEWVEVV 465
Query: 222 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGV--ERGFKDKPYPRLVKMVLSATLTQD 279
+ + NR + GV E G+K PRL K++LSAT+T+D
Sbjct: 466 IPAL---DRNRID-------------VNAKSGGVLQELGWKTC-KPRLQKIILSATMTRD 508
Query: 280 PNKLAQLDLHHPLFLTTGETR 300
+KL L L +P + + + R
Sbjct: 509 ISKLQALRLRNPKLVVSDDPR 529
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 74/131 (56%), Gaps = 6/131 (4%)
Query: 318 LKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN-HFGELRIKIKEYSGLQRQSVRSK 376
KP+ A + S+ ++F S ES RL LL+ +I + + S K
Sbjct: 646 FKPMAASASVSSV-----LIFARSSESASRLARLLSLMHPPFANRIGTLTKSNKSSTSRK 700
Query: 377 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCF 436
TL A+R GK+ +++++D +RG+D+ + +VV+YD P + +YIHR GRTARAG+ G +
Sbjct: 701 TLSAYRNGKLSIVIATDRASRGLDLPSLTHVVSYDIPTSLTSYIHRVGRTARAGRSGSAW 760
Query: 437 TLLHKDEVKRF 447
TL+ E + F
Sbjct: 761 TLVAHSEGRWF 771
>gi|440632967|gb|ELR02886.1| hypothetical protein GMDG_01108 [Geomyces destructans 20631-21]
Length = 870
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 122/372 (32%), Positives = 180/372 (48%), Gaps = 85/372 (22%)
Query: 14 WMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETI-GPGLFERDL 72
W+ SP+ V+ + L L + +L+ GI S F VQ AV + GP D+
Sbjct: 266 WLGSPISVAPTATAQFEDL-GLPSAVIESLKKSGIPSAFAVQAAVLSLLLPGPQKQPGDV 324
Query: 73 CINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG--- 129
+++ TGSGKTL+Y LP+V+ +S V LR L+V+PTR+L Q ++V A A G
Sbjct: 325 LVSAATGSGKTLAYVLPMVEDISQTMVTQLRGLIVMPTRELVTQAREVSDMCANAYGTGS 384
Query: 130 ---LSVGLAVGQSSIADEISELIKRPKLEAGICYDPE----------------------- 163
++VG+A+G ++ E S L+K+ YDP+
Sbjct: 385 RRHINVGVAIGNQTLRQEQSSLMKQ-----DFVYDPKEYRARQERINAAWSGSSVGDEVA 439
Query: 164 ------------DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 211
D + + VDI++ TPGRL++H+ +T GFTLEHL +LV+DE D+LL
Sbjct: 440 NLLMEEDISTPIDHIVQYSPKVDIMICTPGRLVEHLKSTPGFTLEHLKWLVIDEADKLLD 499
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
+++Q WL TV+ + T PS S KD R+ K+V
Sbjct: 500 QSFQQWLETVMA--------SLTSRETAAPSQLRS-------------KD----RITKVV 534
Query: 272 LSATLTQDPNKLAQLDLHHPLF--------LTTGETRY---KLPERL-ESYKLICESKLK 319
LSAT+T+D L+QL L+ P F + GE + LP L ES I + LK
Sbjct: 535 LSATMTRDIGLLSQLKLNKPKFVVLEGNEGMGAGEGQVDTLNLPHTLHESAIKIDQEGLK 594
Query: 320 PLYLVALLQSLG 331
PLYL+ +L+ G
Sbjct: 595 PLYLLEVLKRNG 606
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 73/129 (56%), Gaps = 5/129 (3%)
Query: 319 KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTL 378
KP + L++ G ++FT S ES RL LL + + E + + R +TL
Sbjct: 688 KPAGNIKLVKPHG---VLIFTKSNESAVRLFRLLALL--VPSRASEIGAITSTTSRKRTL 742
Query: 379 KAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 438
++FR G + VL++SD + RG+D+ + +VVNYD P I +Y+HR GRTARAG+ G TL
Sbjct: 743 RSFRSGALSVLIASDLVARGLDLPNLAHVVNYDMPTSITSYVHRVGRTARAGKEGAATTL 802
Query: 439 LHKDEVKRF 447
E + F
Sbjct: 803 FSATEGRWF 811
>gi|310796139|gb|EFQ31600.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
Length = 873
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 130/376 (34%), Positives = 187/376 (49%), Gaps = 84/376 (22%)
Query: 6 KKSMPVLP-WMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIG 64
K S LP W+ +P+ V+ P + ++P+ AL++ G F VQ A + +
Sbjct: 269 KPSYETLPHWLAAPIRVAPDTRTPFADI-GINPKAARALESKGFRDAFAVQTAAFPLLL- 326
Query: 65 PGLFER--DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 122
P R DL I + TGSGKTL+YALP+V+ +S AV LRALVVLPTR+L Q ++VF
Sbjct: 327 PSCKHRQGDLLIAAATGSGKTLAYALPVVRDISQGAVTRLRALVVLPTRELVKQAQEVFE 386
Query: 123 AIAPAVG------LSVGLAVGQSSIADEISELIKRPKLEAGICYDPE------------- 163
A A + +G+++G + E + L++R + YDPE
Sbjct: 387 LCAGAFDGRDQKRVRIGISIGSQQLRHEQAALVEREER-----YDPEAYRAARSRELEAW 441
Query: 164 ----------------------DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYL 201
D + + S VD+L+ TPGRL++HIN T GF+L+H+ +L
Sbjct: 442 MDVEEPATPAGSKDAAAAGSLPDHVVDYTSKVDVLICTPGRLVEHINLTPGFSLDHVRWL 501
Query: 202 VVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKD 261
VVDE D+LL +++Q WL V+ R+ N+FS A F S G GV R
Sbjct: 502 VVDEADKLLAQSFQGWLDVVMPKLRT---NKFS-ARDFPDSNLG--------GVVR---- 545
Query: 262 KPYPRLVKMVLSATLTQDPNKLAQLDLHHP-LFLTTGE--------TRYKLPERL-ESYK 311
K+VLSATLT+D + L+ L L P L + G + LP L ES
Sbjct: 546 -------KIVLSATLTRDLSLLSGLHLRRPQLIVLEGSQADGSAPIAEHTLPTLLKESAI 598
Query: 312 LICESKLKPLYLVALL 327
+ ++ LKPLYL+ LL
Sbjct: 599 RVHDANLKPLYLIDLL 614
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 60/100 (60%), Gaps = 1/100 (1%)
Query: 335 CIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 393
++FT S ES RL L+ L I + Q+ S R + L+AF ++++LV+SD
Sbjct: 704 ALIFTKSNESVLRLSRLIALLEPSLAPSIATLTSTQKTSDRRRALRAFAGRRLRLLVASD 763
Query: 394 AMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 433
+ RG+D+ ++NVVNYD PA Y+HR GRT RAG+ G
Sbjct: 764 LVARGVDLPLLDNVVNYDLPASAAGYVHRDGRTDRAGRAG 803
>gi|357013998|ref|ZP_09078997.1| DEAD/DEAH box helicase domain-containing protein, partial
[Paenibacillus elgii B69]
Length = 406
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 123/400 (30%), Positives = 186/400 (46%), Gaps = 69/400 (17%)
Query: 39 LKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA 98
L A+Q G + P+Q E I L D+ + TG+GKTL++ALPI++ + N A
Sbjct: 15 LAEAMQKHGYNEPTPIQ----SEAIPVALAGHDIIAQAQTGTGKTLAFALPILENI-NPA 69
Query: 99 VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGI 158
++AL+V PTR+LA+Q+ + AP GL V A G
Sbjct: 70 NPNVQALIVTPTRELAIQITEEIKRWAPLKGLRVLSAYG--------------------- 108
Query: 159 CYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWL 218
D E +++L+ + I+VATPGRL+DH+ L L LV+DE D++L + +L
Sbjct: 109 GQDVERQIRKLEGNIHIIVATPGRLLDHLR-RETVQLHKLSVLVLDEADQML---HMGFL 164
Query: 219 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ 278
P V+++ + PS R ++ SAT+
Sbjct: 165 PEVVEII------------SVTPS-----------------------RRQTLLFSATMPP 189
Query: 279 DPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVF 338
+LA+ + P+ + R L E +E + + K L L + + EE +
Sbjct: 190 RIRQLAKEYMRQPVEIEVKSKRVTLDE-IEQVVIQTTDRGK---LETLCKLIDEENPYLA 245
Query: 339 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRG 398
+ R L+N E E G Q+ R + +K FRE KIQ+LV++D RG
Sbjct: 246 MIFCRTKLRASKLMNELAERGYSCDELHGDLTQAKREQVMKRFREAKIQLLVATDIAARG 305
Query: 399 MDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 438
+DVEG+ +V NYD P ++YIHR GRT RAGQ G+ FT
Sbjct: 306 LDVEGITHVFNYDIPHDAESYIHRIGRTGRAGQTGKAFTF 345
>gi|71031306|ref|XP_765295.1| ATP-dependent RNA helicase [Theileria parva strain Muguga]
gi|68352251|gb|EAN33012.1| ATP-dependent RNA helicase, putative [Theileria parva]
Length = 470
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 119/410 (29%), Positives = 195/410 (47%), Gaps = 79/410 (19%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E I L +D+ + TGSGKT ++ +PI+Q L + R L +L++ PTR+
Sbjct: 64 PTKIQI--EAIPIALSGKDIIGLAETGSGKTAAFTIPILQKLLEKPQR-LFSLILAPTRE 120
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
L+LQ+K+ ++ +GL V L +G + + +L K+P
Sbjct: 121 LSLQIKEQLISLGSEIGLDVCLILGGLDMVSQALQLSKKP-------------------- 160
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
I+V +PGR+ DH+ T+GF+LE + YLV+DE D+LL +D ++
Sbjct: 161 -HIIVGSPGRIADHLQNTKGFSLETIKYLVLDEADKLLS---------------TDFDDS 204
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
+ T LP KDK V + SAT+T KL ++ L P+
Sbjct: 205 LNKIITSLP------------------KDK-----VTYLYSATMTSKITKLQKVTLMKPI 241
Query: 293 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352
+ T+Y E L L+ K K YL +L +VF ++ ++ ++ L
Sbjct: 242 QINVN-TKYHTSEHLIQKYLLIPLKFKYTYLACILWKYSTSTIMVFCNTCLTSQKVTLFL 300
Query: 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ-------------VLVSSDAMTRGM 399
+ L K G Q R +L +F+ GK+Q +LV +D +RG+
Sbjct: 301 QN---LSFKSVCLHGKLSQIQRLNSLNSFKTGKLQPIPQPHIISGLFNILVVTDVGSRGL 357
Query: 400 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKK 449
D+ V+ V+N+D P K YIHR GRTARAG+ G TL+ + +++ F++
Sbjct: 358 DIPFVDLVINFDVPNTSKDYIHRVGRTARAGKSGISLTLITQYDIESFQR 407
>gi|154282339|ref|XP_001541965.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150410145|gb|EDN05533.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 826
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 107/321 (33%), Positives = 165/321 (51%), Gaps = 53/321 (16%)
Query: 14 WMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFER--D 71
W+ P + + +L ++ L L+ G + FP+Q AV E +G G D
Sbjct: 228 WLTQPFAAATLSERNFSNL-GVNKTLVSVLERRGYTEAFPIQAAVL-ELLGTGKHRHSGD 285
Query: 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLS 131
LCI++ TGSGKTL+YALP+V + + + LR LVV+PTR+L Q ++ A GL
Sbjct: 286 LCISATTGSGKTLAYALPLVAGIEHSSYPRLRGLVVVPTRELVWQAREACELCATGTGLR 345
Query: 132 VGLAVGQSSIADEISELIKRPKL----------------EAGICYDPEDVLQELQS---- 171
+G AVG +S+ +E + LIK + +A ++ ++ + E ++
Sbjct: 346 IGTAVGTASLNEEQASLIKHEQFYSPRTDQIKNIQQMSADAWTSFNIQEYISEAENSPSA 405
Query: 172 ----------AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 221
+VDIL+ TPGRL+ HI +T+GFTL HL +LV+DE DRLL E++Q W+ V
Sbjct: 406 FPNHVAIPSPSVDILICTPGRLVQHIKSTKGFTLGHLEWLVIDEADRLLNESFQEWVEVV 465
Query: 222 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGV--ERGFKDKPYPRLVKMVLSATLTQD 279
+ + NR + GV E G+K PRL K++LSAT+T+D
Sbjct: 466 IPAL---DRNRID-------------VNAKSGGVLQELGWK-TCKPRLQKIILSATMTRD 508
Query: 280 PNKLAQLDLHHPLFLTTGETR 300
+KL L L +P + + + R
Sbjct: 509 ISKLQALRLRNPKLVVSDDPR 529
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 74/131 (56%), Gaps = 6/131 (4%)
Query: 318 LKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN-HFGELRIKIKEYSGLQRQSVRSK 376
KP+ A + S+ ++F S ES RL LL+ +I + + S K
Sbjct: 646 FKPMAASASVSSV-----LIFARSSESASRLARLLSLMHPPFANRIGTLTKSNKSSTSRK 700
Query: 377 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCF 436
TL AFR GK+ +++++D +RG+D+ + +VV+YD P + +YIHR GRTARAG+ G +
Sbjct: 701 TLSAFRNGKLSIVIATDRASRGLDLPSLTHVVSYDIPTSLTSYIHRVGRTARAGRSGSAW 760
Query: 437 TLLHKDEVKRF 447
TL+ E + F
Sbjct: 761 TLVAHSEGRWF 771
>gi|156083174|ref|XP_001609071.1| DEAD/DEAH box helicase and helicase conserved C-terminal domain
containing protein [Babesia bovis T2Bo]
gi|154796321|gb|EDO05503.1| DEAD/DEAH box helicase and helicase conserved C-terminal domain
containing protein [Babesia bovis]
Length = 454
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 113/398 (28%), Positives = 187/398 (46%), Gaps = 65/398 (16%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P+Q+A I L RD+ + TGSGKT ++ +P++ L R + +V+ P+R+
Sbjct: 57 PIQMAA----IPHALNGRDVIGLAVTGSGKTGAFTIPVLHHLLEDVQR-IYCVVLAPSRE 111
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
L Q+ + F A++ ++ L V + +G + + S L KRP
Sbjct: 112 LCEQIAEQFRALSSSIALQVCVIIGGVDMVHQASALAKRPH------------------- 152
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
++VA+PGRL DH+ T+GF+L + LV+DE DRLL + + L ++ ++ +
Sbjct: 153 --VIVASPGRLADHVENTKGFSLSTVKKLVIDEADRLLSQDFDEELDKIIHAMPTERQ-- 208
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
TFL SAT+T+ +KL ++ L P+
Sbjct: 209 -----TFL-------------------------------FSATMTKKLSKLQKMALKDPI 232
Query: 293 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352
+ + +Y E L+ L+ K K YL ALL IVF + + R L
Sbjct: 233 SVQVDD-KYSTAENLDQRFLLVPQKYKYTYLAALLWYYATRTAIVFCKTCDGAQRCAAYL 291
Query: 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 412
I G Q+ RS+ L+ F+ G + +LV+++ RG+D+ V V+N+D
Sbjct: 292 KGLKFTTICKVCLHGKMTQADRSRALQIFKTGSVNILVATEVGGRGLDLPMVELVINFDI 351
Query: 413 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
P K YIHR GRTARAG+ G T++ + +V+ F+++
Sbjct: 352 PECSKDYIHRVGRTARAGRSGLALTVVTQYDVELFQRI 389
>gi|294676409|ref|YP_003577024.1| ATP-dependent RNA helicase SrmB [Rhodobacter capsulatus SB 1003]
gi|294475229|gb|ADE84617.1| ATP-dependent RNA helicase SrmB [Rhodobacter capsulatus SB 1003]
Length = 548
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 128/415 (30%), Positives = 195/415 (46%), Gaps = 79/415 (19%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LDP + A+ + G + P+Q I P L RD+ + TG+GKT S+ LP+V L
Sbjct: 9 LDPAVLRAIADAGYETPTPIQAGA----IPPALEGRDVLGIAQTGTGKTASFTLPMVTML 64
Query: 95 SN-RA-VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
S+ RA R R+LV+ PTR+LA QV + F A L+ L +G
Sbjct: 65 SSGRARARMPRSLVLCPTRELAAQVAENFDTYAKYTRLTKALLIG--------------- 109
Query: 153 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLR 211
G+ + +D L + VD+L+ATPGRL+DH RG L + +VVDE DR+L
Sbjct: 110 ----GVSFGEQDKL--IDRGVDVLIATPGRLLDHFE--RGKLLLTGVQIMVVDEADRMLD 161
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
F+P +ER F+ P+ R +
Sbjct: 162 MG-------------------------FIPD------------IERIFQLTPFTRQT-LF 183
Query: 272 LSATLTQDPNKLAQLDLHHPLFL------TTGETRYKLPERLESYKLICESKLKPLYLVA 325
SAT+ + ++ LH P + TT ET + ++ + +K K L A
Sbjct: 184 FSATMAPEIERITNTFLHAPARIEVARQATTSETITQKLIQITPPRRDQSAKAKRELLRA 243
Query: 326 LLQSLGEE--KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 383
+++S GE I+F + + L G G QS+R+KTL AFR+
Sbjct: 244 IIKSEGEACTNAIIFCNRKTDVDIVAKSLKTHG---FNAAPIHGDLDQSLRTKTLDAFRD 300
Query: 384 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 438
G +Q+L++SD RG+D+ V++V NYD P++ + Y+HR GRT RAG+LG +++
Sbjct: 301 GSLQLLIASDVAARGLDIPAVSHVFNYDLPSHAEDYVHRIGRTGRAGRLGTAYSI 355
>gi|307179995|gb|EFN68085.1| Probable ATP-dependent RNA helicase DDX31 [Camponotus floridanus]
Length = 871
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 143/476 (30%), Positives = 219/476 (46%), Gaps = 90/476 (18%)
Query: 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFE-RDLCINS 76
PVD +F L + QNM I+ + VQ Q+ I P +F +D+ I S
Sbjct: 278 PVDEPIFTKITFADLNIHPFMISNLEQNMHITKMTTVQ----QKAI-PEIFSGKDVLIRS 332
Query: 77 PTGSGKTLSYALPIVQTLS------NRAVRCLRALVVLPTRDLALQVKDVFAA-IAPAVG 129
TGSGKTL+YALPIV+ L NR L AL+V+PTR+LALQ + F + P
Sbjct: 333 QTGSGKTLAYALPIVELLHKIRPKLNRN-SGLSALIVVPTRELALQTYECFIKLVKPFTW 391
Query: 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA 189
+ G +G KR +A L+ +IL+ TPGRL+DHI
Sbjct: 392 IVPGYIIGGE----------KRKAEKA-----------RLRKGCNILITTPGRLLDHIKH 430
Query: 190 TRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKT 249
T+ L + Y ++DE DR+L Y+ + + Q S EN
Sbjct: 431 TKALRLNEVRYFILDEADRMLEMGYEKNISDMNQEFDSKAENA----------------- 473
Query: 250 IRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL--------TTGETRY 301
+E+ KD R ++LSATLTQ KLA L +++P+F+ T+G
Sbjct: 474 ---QNIEQDCKDVTQSRRKTILLSATLTQAVEKLAGLAMYNPIFVDAAKENLETSGGDTS 530
Query: 302 KLPERL-------ESYKLICESKLKPL----YLVALLQSLGEEKCIVFTSSVE----STH 346
++ E L +SY ++ KL+ + Y+V+ Q+ G+ K ++F ++ + T
Sbjct: 531 EINEDLIVPQSVIQSY-IVTPPKLRMVTLSAYIVSRCQTPGQHKILIFMATQDMVDYHTE 589
Query: 347 RLCTLLNHFGE----------LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT 396
L ++L + + ++ + G Q R++ K F K VL+ +D
Sbjct: 590 ILSSILTESVDDNDDEDSDPLVNVEFFKLHGNMTQKERTEVFKTFSRAKSGVLLCTDVAA 649
Query: 397 RGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 452
RG+D+ V+ VV Y P + Y+HR GRTARAG G L EV+ F ++L+
Sbjct: 650 RGLDMPKVDCVVQYTGPISTRDYVHRIGRTARAGCSGTATIFLTPSEVE-FVRMLE 704
>gi|169598332|ref|XP_001792589.1| hypothetical protein SNOG_01967 [Phaeosphaeria nodorum SN15]
gi|118595361|sp|Q0V1Z7.1|DRS1_PHANO RecName: Full=ATP-dependent RNA helicase DRS1
gi|111069059|gb|EAT90179.1| hypothetical protein SNOG_01967 [Phaeosphaeria nodorum SN15]
Length = 808
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 113/437 (25%), Positives = 205/437 (46%), Gaps = 70/437 (16%)
Query: 31 HLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPI 90
H L ++ L +G + P+Q + I + +D+ + TGSGKT ++ +PI
Sbjct: 288 HAMSLSRPIQKGLAAIGFTEPTPIQA----KAIPIAMQGKDVVGGAETGSGKTAAFLIPI 343
Query: 91 VQTLSNR--AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
++ L R V R + +PTR+LA+Q +V +A ++ L G
Sbjct: 344 LERLLYRPKKVPTTRVAIFMPTRELAVQCFNVATKLASFTDITFALLAG----------- 392
Query: 149 IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208
G ++V+ L++ D+++ATPGR +DH++ T F +EHL LV+DE DR
Sbjct: 393 --------GFSSREQEVM--LKTRPDVVIATPGRFIDHMHNTAAFQVEHLEILVLDEADR 442
Query: 209 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLV 268
+L E ++ L +L T +P + +
Sbjct: 443 MLEEGFETQLNEIL---------------TTIPKSRQT---------------------- 465
Query: 269 KMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP--LYLVAL 326
M+ SAT+T +KL ++ + P+ L ++ + + + + + K YL+ +
Sbjct: 466 -MLFSATMTSTVDKLIRIGMDKPVRLMVDAKKHTVKGLTQEFIRLRQGKEDKRLAYLMYI 524
Query: 327 LQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 386
+ + E+ I+F + HR+ + G +K E G Q R + ++AFR GK
Sbjct: 525 CEKIYTERVIIFFRQKKEAHRVRVVFALCG---LKASELHGNMSQEQRIQAVEAFRSGKS 581
Query: 387 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 446
L+++D +RG+D++ V+ V+NY+ P + Y+HR GRTARAG+ GR TL + + K
Sbjct: 582 SYLLATDVASRGLDIKNVSTVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKV 641
Query: 447 FKKLLQKADNDSCPIHS 463
K+ ++++ + + S
Sbjct: 642 VKQAVKQSRDQGSKVVS 658
>gi|240274402|gb|EER37918.1| ATP-dependent RNA helicase dbp6 [Ajellomyces capsulatus H143]
Length = 826
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 108/321 (33%), Positives = 165/321 (51%), Gaps = 53/321 (16%)
Query: 14 WMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFER--D 71
W+ P + + +L ++ L L+ G + FP+Q AV E +G G D
Sbjct: 228 WLTQPFAAATLSERNFSNL-GVNKTLVSVLERRGYTEAFPIQAAVL-ELLGTGKHRHSGD 285
Query: 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLS 131
LCI++ TGSGKTL+YALP+V + + + LR LVV+PTR+L Q ++ A GL
Sbjct: 286 LCISAATGSGKTLAYALPLVAGIEHSSYPRLRGLVVVPTRELVWQAREACELCATGRGLR 345
Query: 132 VGLAVGQSSIADEISELIKRPKL----------------EAGICYDPEDVLQELQ----- 170
+G AVG +S+ +E + LIK + +A ++ ++ + E +
Sbjct: 346 IGTAVGTASLNEEQASLIKHEQFYSPSIDQIKNIQQMSADAWTSFNIQEYISEAESSHSA 405
Query: 171 ---------SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 221
S+VDIL+ TPGRL+ HI +T+GFTL HL +LV+DE DRLL E++Q W+ V
Sbjct: 406 FPNHVAIPSSSVDILICTPGRLVQHIKSTKGFTLGHLEWLVIDEADRLLNESFQEWVEVV 465
Query: 222 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGV--ERGFKDKPYPRLVKMVLSATLTQD 279
+ + NR + GV E G+K PRL K++LSAT+T+D
Sbjct: 466 IPAL---DRNRID-------------VNAKSGGVLQELGWKTC-KPRLQKIILSATMTRD 508
Query: 280 PNKLAQLDLHHPLFLTTGETR 300
+KL L L +P + + + R
Sbjct: 509 ISKLQVLRLRNPKLVVSDDPR 529
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 74/131 (56%), Gaps = 6/131 (4%)
Query: 318 LKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN-HFGELRIKIKEYSGLQRQSVRSK 376
KP+ A + S+ ++F S ES RL LL+ +I + + S K
Sbjct: 646 FKPMAASASVSSV-----LIFARSSESASRLARLLSLMHPPFANRIGTLTKSNKSSTSRK 700
Query: 377 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCF 436
TL A+R GK+ +++++D +RG+D+ + +VV+YD P + +YIHR GRTARAG+ G +
Sbjct: 701 TLSAYRNGKLSIVIATDRASRGLDLPSLTHVVSYDIPTSLTSYIHRVGRTARAGRSGSAW 760
Query: 437 TLLHKDEVKRF 447
TL+ E + F
Sbjct: 761 TLVAHSEGRWF 771
>gi|327356903|gb|EGE85760.1| DEAD/DEAH box helicase [Ajellomyces dermatitidis ATCC 18188]
Length = 848
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 103/294 (35%), Positives = 155/294 (52%), Gaps = 48/294 (16%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFER--DLCINSPTGSGKTLSYALPIVQ 92
L+ L LQ G ++ FP+Q AV E +G G + DLCI++ TGSGKTL+YALP+V
Sbjct: 267 LNKNLISILQKRGYTTAFPIQAAVL-ELLGNGEHQHSGDLCISAATGSGKTLAYALPLVA 325
Query: 93 TLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
+ + LR LVV+PTR+L Q +D A GL +G AVG +S+ +E + LIK
Sbjct: 326 GIEQLPLARLRGLVVVPTRELVKQARDACELCATRTGLRIGTAVGTASLKEEQALLIKHD 385
Query: 153 KL----------------EAGICYDPEDVLQELQSA--------------VDILVATPGR 182
+L E+ ++ ++ + E++ + +DIL+ TPGR
Sbjct: 386 QLYSPSNRRIGNGHQMIAESWASFNFQEYITEVERSHSAFPDHVTTPSPNIDILICTPGR 445
Query: 183 LMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPS 242
L+DHI +T+GF+LEHL +LV+DE DRLL E++Q W+ V+ + + LP
Sbjct: 446 LVDHIRSTKGFSLEHLEWLVIDEADRLLNESFQEWVEVVIPALERVRVDVAGKSGRILPD 505
Query: 243 AFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT 296
+ C PRL K++LSAT+T+D KL L L +P + +
Sbjct: 506 LGWQI-----C----------KPRLRKIILSATMTRDIAKLNSLRLQNPKLVVS 544
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 72/134 (53%), Gaps = 20/134 (14%)
Query: 335 CIVFTSSVESTHRLCTLL--------NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 386
+VFT S ES RL LL N G L + + S KT+ A+R GK+
Sbjct: 675 VLVFTKSSESASRLARLLVLMHPPFANRIGTL-------AKSSKSSTSRKTISAYRNGKL 727
Query: 387 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 446
+++++D +RG+D+ + +VV+YD P + +YIHR GRTARAG+ G +TL+ E +
Sbjct: 728 SIVIATDRASRGLDLPSLTHVVSYDIPTSLTSYIHRVGRTARAGRSGSAWTLVAHREGRW 787
Query: 447 FKKLLQKADNDSCP 460
F + K CP
Sbjct: 788 FANEIVK-----CP 796
>gi|358396993|gb|EHK46368.1| hypothetical protein TRIATDRAFT_218284 [Trichoderma atroviride IMI
206040]
Length = 863
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 119/344 (34%), Positives = 165/344 (47%), Gaps = 71/344 (20%)
Query: 13 PWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDL 72
PW+ SP+ VS P L L P+ L+ G + F VQ A + DL
Sbjct: 274 PWLASPIRVSQDTQTPFTDLGIL-PKAARFLEQKGYTEAFAVQTAALPLLLPTNKQPGDL 332
Query: 73 CINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG--- 129
+++ TGSGKTL+YALPIV+ LSN + LR LVVLPTR+L Q ++VF A A
Sbjct: 333 LVSAATGSGKTLAYALPIVRDLSNSVITRLRCLVVLPTRELVKQAQEVFELCAKAYEGED 392
Query: 130 ---LSVGLAVGQSSIADEIS-----------ELIKRPKLEAGICYDPEDVLQEL------ 169
+ +G+A+G S+A E E K+ + EA E+ L EL
Sbjct: 393 RKRVRIGIAIGNQSLASEQDILVTKETRYDPETYKQLEEEASSKSTSEEDLDELLTSSDT 452
Query: 170 -----------------QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE 212
S VDIL+ TPGRL++HI+ T GFTL ++ +LVVDE D+LL +
Sbjct: 453 RRTNPRIGPWQGQVIDFHSKVDILICTPGRLVEHIDQTPGFTLSYIRWLVVDEADKLLAQ 512
Query: 213 AYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVL 272
++Q WL VL F + +G+ R F D PY + K++L
Sbjct: 513 SFQGWLDVVL--------------DKFKVNHYGA----------RDFPDMPYSGVRKILL 548
Query: 273 SATLTQDPNKLAQLDLHHP--LFLTTGE----TRYKLPERLESY 310
SATLT+D + L QL L P + L +G + LP+ L Y
Sbjct: 549 SATLTRDLSLLNQLALKRPKLIVLESGSDVQVAEHSLPDLLREY 592
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 68/117 (58%), Gaps = 3/117 (2%)
Query: 334 KCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQSVRSKTLKAFR--EGKIQVLV 390
+ ++FT S E+ RL LL + L +I + S+R KTL+AF +++++
Sbjct: 698 RALIFTKSNEAALRLSRLLTILDKSLATQISTLTSTTPTSIRRKTLRAFTTPSSPLRLII 757
Query: 391 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 447
+SD + RG+D+ + +VVNYD P + Y+HR GRTARAG+ G +TL+ E F
Sbjct: 758 ASDLVARGIDIPKLPHVVNYDLPPSVAGYVHRVGRTARAGRTGCAWTLVGDGESGWF 814
>gi|325090745|gb|EGC44055.1| ATP-dependent RNA helicase DBP6 [Ajellomyces capsulatus H88]
Length = 826
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 108/321 (33%), Positives = 165/321 (51%), Gaps = 53/321 (16%)
Query: 14 WMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFER--D 71
W+ P + + +L ++ L L+ G + FP+Q AV E +G G D
Sbjct: 228 WLTQPFAAATLSERNFSNL-GVNKTLVSVLERRGYTEAFPIQAAVL-ELLGTGKHRHSGD 285
Query: 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLS 131
LCI++ TGSGKTL+YALP+V + + + LR LVV+PTR+L Q ++ A GL
Sbjct: 286 LCISAATGSGKTLAYALPLVAGIEHSSYPRLRGLVVVPTRELVWQAREACELCATGRGLR 345
Query: 132 VGLAVGQSSIADEISELIKRPKL----------------EAGICYDPEDVLQELQ----- 170
+G AVG +S+ +E + LIK + +A ++ ++ + E +
Sbjct: 346 IGTAVGTASLNEEQASLIKHEQFYSPSIDQIKNIQQMSADAWTSFNIQEYISEAESSHSA 405
Query: 171 ---------SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 221
S+VDIL+ TPGRL+ HI +T+GFTL HL +LV+DE DRLL E++Q W+ V
Sbjct: 406 FPNHVAIPSSSVDILICTPGRLVQHIKSTKGFTLGHLEWLVIDEADRLLNESFQEWVEVV 465
Query: 222 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGV--ERGFKDKPYPRLVKMVLSATLTQD 279
+ + NR + GV E G+K PRL K++LSAT+T+D
Sbjct: 466 IPAL---DRNRID-------------VNAKSGGVLQELGWKTC-KPRLQKIILSATMTRD 508
Query: 280 PNKLAQLDLHHPLFLTTGETR 300
+KL L L +P + + + R
Sbjct: 509 ISKLQVLRLRNPKLVVSDDPR 529
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 74/131 (56%), Gaps = 6/131 (4%)
Query: 318 LKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN-HFGELRIKIKEYSGLQRQSVRSK 376
KP+ A + S+ ++F S ES RL LL+ +I + + S K
Sbjct: 646 FKPMAASASVSSV-----LIFARSSESASRLARLLSLMHPPFANRIGTLTKSNKSSTSRK 700
Query: 377 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCF 436
TL A+R GK+ +++++D +RG+D+ + +VV+YD P + +YIHR GRTARAG+ G +
Sbjct: 701 TLSAYRNGKLSIVIATDRASRGLDLPSLTHVVSYDIPTSLTSYIHRVGRTARAGRSGSAW 760
Query: 437 TLLHKDEVKRF 447
TL+ E + F
Sbjct: 761 TLVAHSEGRWF 771
>gi|239612589|gb|EEQ89576.1| DEAD/DEAH box helicase [Ajellomyces dermatitidis ER-3]
Length = 845
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 103/294 (35%), Positives = 155/294 (52%), Gaps = 48/294 (16%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFER--DLCINSPTGSGKTLSYALPIVQ 92
L+ L LQ G ++ FP+Q AV E +G G + DLCI++ TGSGKTL+YALP+V
Sbjct: 267 LNKNLISILQKRGYTTAFPIQAAVL-ELLGNGEHQHSGDLCISAATGSGKTLAYALPLVA 325
Query: 93 TLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
+ + LR LVV+PTR+L Q +D A GL +G AVG +S+ +E + LIK
Sbjct: 326 GIEQLPLARLRGLVVVPTRELVKQARDACELCATRTGLRIGTAVGTASLKEEQALLIKHD 385
Query: 153 KL----------------EAGICYDPEDVLQELQSA--------------VDILVATPGR 182
+L E+ ++ ++ + E++ + +DIL+ TPGR
Sbjct: 386 QLYSPSNRRIGNGHQMIAESWASFNFQEYITEVERSHSAFPDHVATPSPNIDILICTPGR 445
Query: 183 LMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPS 242
L+DHI +T+GF+LEHL +LV+DE DRLL E++Q W+ V+ + + LP
Sbjct: 446 LVDHIRSTKGFSLEHLEWLVIDEADRLLNESFQEWVEVVIPALERVRVDVAGKSGRILPD 505
Query: 243 AFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT 296
+ C PRL K++LSAT+T+D KL L L +P + +
Sbjct: 506 LGWQI-----C----------KPRLRKIILSATMTRDIAKLNSLRLQNPKLVVS 544
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 72/134 (53%), Gaps = 20/134 (14%)
Query: 335 CIVFTSSVESTHRLCTLL--------NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 386
+VFT S ES RL LL N G L + + S KT+ A+R GK+
Sbjct: 672 VLVFTKSSESASRLARLLVLMHPPFANRIGTL-------AKSSKSSTSRKTISAYRNGKL 724
Query: 387 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 446
+++++D +RG+D+ + +VV+YD P + +YIHR GRTARAG+ G +TL+ E +
Sbjct: 725 SIVIATDRASRGLDLPSLTHVVSYDIPTSLTSYIHRVGRTARAGRSGSAWTLVAHREGRW 784
Query: 447 FKKLLQKADNDSCP 460
F + K CP
Sbjct: 785 FANEIVK-----CP 793
>gi|47682722|gb|AAH69876.1| Ddx51 protein, partial [Mus musculus]
Length = 260
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 86/228 (37%), Positives = 129/228 (56%), Gaps = 17/228 (7%)
Query: 267 LVKMVLSATLTQDPNKLAQLDLHHPLFLTT---------------GETRYKLPERLESYK 311
L K++ SATLTQDP KL +L L+ P +T +Y P L +
Sbjct: 18 LQKLLFSATLTQDPEKLQRLGLYQPRLFSTRLGQQSPKDTAEVDENSGKYTFPVGLTHHY 77
Query: 312 LICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQ 371
+ C KPL ++ L+ + + + FT+S E++HRL L FG + + E+S
Sbjct: 78 VPCRLSSKPLIVLHLVLRMSCSRALCFTNSRENSHRLYLLAQAFGG--VSVAEFSSRYGP 135
Query: 372 SVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ 431
R K LK F +GKIQ+L+S+DA RG+DV+GV V+NYD P Y++TY+HR GRTARAG+
Sbjct: 136 GQRKKILKQFEQGKIQLLISTDATARGIDVQGVELVINYDAPQYLRTYVHRVGRTARAGK 195
Query: 432 LGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSV 479
G+ FTLL K + ++F +++ +A H IP L++ L Y++
Sbjct: 196 TGQAFTLLLKVQERKFLQMVSEAGVPELTHHEIPRKLLQPLVARYETA 243
>gi|403350666|gb|EJY74800.1| DEAD/DEAH box helicase family protein [Oxytricha trifallax]
Length = 795
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 130/429 (30%), Positives = 199/429 (46%), Gaps = 65/429 (15%)
Query: 30 DHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALP 89
++ P + P+ L+ GIS LFPVQ + + +DL + TGSGKTL +ALP
Sbjct: 103 ENFPQITPKTVELLKKRGISGLFPVQYSSFNHIWN----RKDLIVRDLTGSGKTLGFALP 158
Query: 90 IVQTLSNR---AVRCLRALVVLPTRDLALQVKDVFAAIAPAVG-LSVGLAVGQSSIADEI 145
V+ L R ++A+V+ PTR+LALQV F A+ G +V G SI D+
Sbjct: 159 TVEYLRKNKLFGTRKIQAMVLAPTRELALQVSKEFNALKHFEGEYNVLTVYGGVSIDDQT 218
Query: 146 SELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 205
+L K VDI V T GR+MDH+ R F L L++DE
Sbjct: 219 YQLRK---------------------GVDIFVGTTGRVMDHME-RRNFDFTDLKTLILDE 256
Query: 206 TDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYP 265
TD++L++ ++ + ++Q ++K R G++ P
Sbjct: 257 TDQMLKQGFKEDVERIMQ----------------------TIKAARPNGMQVLLFSATIP 294
Query: 266 RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVA 325
VK V + D +DL L T +T L S ++++ L +
Sbjct: 295 FWVKQVAKEQMAPD---FQMVDLAQNLKNKTSKTVNHL-----SINCPYQNRMSALADI- 345
Query: 326 LLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 385
L+ G + IVF S+ + L LL+ +++ I+ G Q+ R TLK F+E K
Sbjct: 346 LICYGGLGQTIVFCSTKAEANSL--LLSD--KIKQDIEVMHGDIAQNQREVTLKRFKENK 401
Query: 386 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 445
VLV++D +RG+D+ V+ V+ + P +++YIHRAGRTARAG+ G C T K
Sbjct: 402 FSVLVATDVASRGLDIPNVDLVIQVEPPNDVESYIHRAGRTARAGRTGTCITFYGKKHQY 461
Query: 446 RFKKLLQKA 454
+ QKA
Sbjct: 462 MINMIEQKA 470
>gi|380486755|emb|CCF38497.1| DEAD/DEAH box helicase, partial [Colletotrichum higginsianum]
Length = 621
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 129/378 (34%), Positives = 187/378 (49%), Gaps = 83/378 (21%)
Query: 3 EAKKKSMPVLP-WMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQE 61
+A K S LP W+ +P+ V+ P + ++P+ L+ G F VQ A
Sbjct: 258 DASKPSYETLPHWLAAPIRVAPDTRTPFVDI-GINPKAAQILEARGFRDAFAVQTAAVPL 316
Query: 62 TIGPGLFER--DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKD 119
+ P R DL + + TGSGKTL+YALPIV+ LS AV LRALVVLPTR+L Q ++
Sbjct: 317 LL-PSCKHRQGDLLVAAATGSGKTLAYALPIVRDLSQSAVTRLRALVVLPTRELVKQAQE 375
Query: 120 VFAAIAPAVG------LSVGLAVGQSSIADEISELIKRPKLEAGICYDPE---------- 163
VF A A + VG++VG + E + L++R + YDPE
Sbjct: 376 VFELCAGAFDGRDQKRVRVGVSVGSQQLRHEQAALVERNER-----YDPEAYRAAHQREL 430
Query: 164 DVLQELQ------------------------SAVDILVATPGRLMDHINATRGFTLEHLC 199
D +E++ S VD+L+ TPGRL++HIN T GF+L+++
Sbjct: 431 DAWKEVEESTADADDDAAVASSLPDHVVNYASRVDVLICTPGRLVEHINLTPGFSLDYVR 490
Query: 200 YLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGF 259
+LVVDE D+LL +++Q WL V+ R+D ++FS R F
Sbjct: 491 WLVVDEADKLLAQSFQGWLDVVMPKLRTD--DKFS---------------------ARDF 527
Query: 260 KDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP-LFLTTGE--------TRYKLPERL-ES 309
D + K+VLSATLT+D + L+ L L P L + G+ + LP L ES
Sbjct: 528 PDSNLSGVRKVVLSATLTRDLSLLSGLQLRRPQLIVLEGDQADGTAPIAEHTLPTLLKES 587
Query: 310 YKLICESKLKPLYLVALL 327
+ ++ LKPLYL+ LL
Sbjct: 588 AIRVHDANLKPLYLIDLL 605
>gi|334703122|ref|ZP_08518988.1| putative ATP-dependent RNA helicase RhlE [Aeromonas caviae Ae398]
Length = 417
Score = 154 bits (390), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 123/421 (29%), Positives = 192/421 (45%), Gaps = 72/421 (17%)
Query: 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQT 93
L PRL+ L ++G ++ PVQ + I L RDL + TG+GKT ++ LP+++
Sbjct: 10 ALSPRLQQTLTDLGYAAPTPVQASA----IPLILAGRDLMAGAQTGTGKTAAFVLPLLEQ 65
Query: 94 L----SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
L ++ A R +RALV++PTR+LA+QV + A L+ L G SIA ++
Sbjct: 66 LLQHPTSDAPRPIRALVLVPTRELAVQVAESVTRYARGTTLTSTLVYGGVSIAAQV---- 121
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209
+ L + VDIL+ATPGRL+DH+ G TL L +LV DE DR+
Sbjct: 122 -----------------EALNAGVDILIATPGRLLDHLRQG-GLTLAELRHLVFDEADRM 163
Query: 210 LREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVK 269
L + + +L+ +D + T L SA C V +D P LV+
Sbjct: 164 LDMGFMDEIKALLKQIPADRQ-------TLLFSATCDDNLFALCKVL--LRD---PALVE 211
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329
+ P ++ ++ GE + L E + + K
Sbjct: 212 VA--------PRNTTAAEVEQRVYAVDGERKLALVEHMLTVK------------------ 245
Query: 330 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 389
G ++F+ + + +L L G I + G QS R L AFR G +Q L
Sbjct: 246 -GWAPALIFSRTRQGADKLAQQLGKGG---INALAFHGDLSQSARENVLLAFRAGTLQAL 301
Query: 390 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKK 449
V++D RG+D+ +N+V+N + P + Y+HR GRT RAG G TL ++ +K
Sbjct: 302 VATDVAARGLDITDLNHVINLEFPHQPEDYVHRIGRTGRAGNKGLAITLFSPEDAPLLEK 361
Query: 450 L 450
+
Sbjct: 362 V 362
>gi|242778909|ref|XP_002479334.1| DEAD/DEAH box helicase, putative [Talaromyces stipitatus ATCC
10500]
gi|218722953|gb|EED22371.1| DEAD/DEAH box helicase, putative [Talaromyces stipitatus ATCC
10500]
Length = 836
Score = 154 bits (390), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 125/391 (31%), Positives = 187/391 (47%), Gaps = 84/391 (21%)
Query: 2 EEAKKKSMPVLP-WMRSPVDVSLFEDCPLDHLP------CLDPRLKVALQNMGISSLFPV 54
E ++K + +P W+ +PV S ++ D P LD + L+ G S PV
Sbjct: 220 ETSEKPTYSTMPDWITNPVTKSPYDRE--DGQPVKFENISLDRTVVSKLEKHGYSEATPV 277
Query: 55 QVAVWQETIGPGLFER------DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108
Q T+ P L + DLC+++ TGSGKTLSY LPI Q+L +V LRALV++
Sbjct: 278 QA-----TVIPLLLDEQHRHRGDLCVSASTGSGKTLSYVLPINQSLQRESVARLRALVIV 332
Query: 109 PTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPE----- 163
PTR+L Q ++ F A L +G A+G + DE ++I+ + + Y+ +
Sbjct: 333 PTRELVKQAREAFEACGS--NLRIGTAIGSVVLKDEQQKIIRWDSVYSPEKYNADQQRTM 390
Query: 164 --------DVL--------------QELQSA---VDILVATPGRLMDHINATRGFTLEHL 198
D+L Q +Q A +D+L++TPGRL+DHI T GF+L HL
Sbjct: 391 SESDWAEFDLLKYRDEVVRAGDLAPQYIQVARPNIDVLISTPGRLVDHIRQTEGFSLRHL 450
Query: 199 CYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERG 258
+LVVDE DRLL E++Q W+ ++ + D+ + R G R
Sbjct: 451 QWLVVDEADRLLNESFQEWVSVLMGALDKEKTANIGDS------------VLARIG--RP 496
Query: 259 FKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG-------ETRYKL-------- 303
+ PYPR K++LSATLT D KL L L +P + G E R K
Sbjct: 497 IQ-SPYPR--KVILSATLTNDITKLNSLRLENPKLVAIGSRNMDSNEERVKHEAEQFVLP 553
Query: 304 PERLESYKLICESKLKPLYLVALLQSLGEEK 334
P +E + + + KP+YL+ LL + + K
Sbjct: 554 PSLMEHFVPVGDGFEKPIYLMKLLLMINKSK 584
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 79/134 (58%), Gaps = 1/134 (0%)
Query: 324 VALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFR 382
VA + G ++FT S ES RL LL+ L +I S KTLK +R
Sbjct: 666 VASASNTGVTSVLIFTKSTESAARLSHLLSLMNPSLESQIGTIVKSNNSSSSRKTLKDYR 725
Query: 383 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD 442
G+I ++V++D +RG+D+ G+ V+NYD P + TY+HR GRTARAG+ G+ +TL+
Sbjct: 726 AGRISIIVATDRASRGIDLVGLGGVINYDMPTSLTTYVHRVGRTARAGKSGQAWTLVEHR 785
Query: 443 EVKRFKKLLQKADN 456
E F+K++ K++N
Sbjct: 786 EGLWFQKVIVKSEN 799
>gi|393910350|gb|EFO27145.2| Ddx49-A-prov protein [Loa loa]
Length = 509
Score = 154 bits (390), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 112/398 (28%), Positives = 190/398 (47%), Gaps = 75/398 (18%)
Query: 43 LQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCL 102
++++ +++ PVQV + D+ + TG+GKTL++ LPI+ L+ +
Sbjct: 58 VRHLAMNTPTPVQVNCIPHILAGS----DVLGCAKTGTGKTLAFGLPILHELAIDPY-GI 112
Query: 103 RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDP 162
ALV+ PTR+LA+Q+ D FAA+ +GL +G+ VG + ++L +RP
Sbjct: 113 CALVLTPTRELAIQIGDQFAALGTPIGLKIGIVVGGKDRVAQGNDLARRPH--------- 163
Query: 163 EDVLQELQSAVDILVATPGRLMDHINA---TRGFTLEHLCYLVVDETDRLLREAYQAWLP 219
I+VATPGRL DH+ + G + L +LV+DE DRLL Y L
Sbjct: 164 ------------IVVATPGRLADHLESDSENTGKLFKKLRFLVLDEADRLLDGQYSIELK 211
Query: 220 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 279
T+L FLP +L + SAT+T
Sbjct: 212 TIL---------------NFLPKQRQTL-----------------------LFSATITSA 233
Query: 280 PNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEK----C 335
++L Q+ + P F ++ ++LE ++C +K YLV ++++ E+
Sbjct: 234 LSQLHQVSVKKPYFF-EDKSEIATVDKLEQKYVLCPCAVKDAYLVYVVKNFHEKHPDSLI 292
Query: 336 IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 395
++F+ + L + + G ++ Q R+ +L FR G+I++L+ +D
Sbjct: 293 LIFSHTCRECQALAIMFHGLG---FQVGSLHSQISQQERTSSLTKFRSGRIKILICTDVA 349
Query: 396 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 433
+RG+D+ V+ V+N++ P KTYIHR GR+ARAG+ G
Sbjct: 350 SRGLDIPHVDLVINHNVPQNPKTYIHRVGRSARAGRFG 387
>gi|54024485|ref|YP_118727.1| RNA helicase [Nocardia farcinica IFM 10152]
gi|54015993|dbj|BAD57363.1| putative RNA helicase [Nocardia farcinica IFM 10152]
Length = 518
Score = 154 bits (390), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 129/430 (30%), Positives = 199/430 (46%), Gaps = 78/430 (18%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV-- 99
AL+ GI + FP+Q A T+ L +D+ PTGSGKTL++ LP++ L+ A
Sbjct: 44 ALRRNGIDAPFPIQAA----TVPDALAGKDVLGRGPTGSGKTLAFGLPMLVRLAGNAAAP 99
Query: 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 159
R R LV++PTR+LA Q++ A A+GL V VG + I + L +
Sbjct: 100 RRPRGLVLVPTRELAAQIERALDEPALALGLRVASVVGGAPIKRQADRLAR--------- 150
Query: 160 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 219
VD+L+ATPGRL D I A L+ + +DE D + A +LP
Sbjct: 151 ------------GVDLLIATPGRLSDLI-AQGAAALDDVSITALDEADHM---ADMGFLP 194
Query: 220 TVLQL---TRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 276
V +L T +D + +++ SATL
Sbjct: 195 QVTRLLDRTPADGQ--------------------------------------RLLFSATL 216
Query: 277 TQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCI 336
+ +KL + L +P+ +T + S+ L+ K ++A + + E I
Sbjct: 217 DGEVDKLVKRYLRNPVTHSTAPPSASV--ATMSHHLLYVRKADKRAVIAEIAAR-EGLTI 273
Query: 337 VFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT 396
+F + RL L G I G + Q+ R++TL AF +G + VLV++D
Sbjct: 274 LFVRTKHGADRLAKQLRAAG---IAAGALHGGKAQNNRTRTLAAFADGSVPVLVTTDVAA 330
Query: 397 RGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 456
RG+ V+G++ VV+ D PA K Y+HRAGRTARAG+ G TL+ +DE +K+ +KA
Sbjct: 331 RGIHVDGISLVVHADPPAEPKAYLHRAGRTARAGEDGVVVTLVTEDERADVEKMTRKAGV 390
Query: 457 DSCPIHSIPS 466
D ++ P
Sbjct: 391 DVVGVNVTPG 400
>gi|312067818|ref|XP_003136922.1| Ddx49-A-prov protein [Loa loa]
Length = 478
Score = 154 bits (390), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 112/398 (28%), Positives = 190/398 (47%), Gaps = 75/398 (18%)
Query: 43 LQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCL 102
++++ +++ PVQV + D+ + TG+GKTL++ LPI+ L+ +
Sbjct: 58 VRHLAMNTPTPVQVNCIPHILAGS----DVLGCAKTGTGKTLAFGLPILHELAIDPY-GI 112
Query: 103 RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDP 162
ALV+ PTR+LA+Q+ D FAA+ +GL +G+ VG + ++L +RP
Sbjct: 113 CALVLTPTRELAIQIGDQFAALGTPIGLKIGIVVGGKDRVAQGNDLARRPH--------- 163
Query: 163 EDVLQELQSAVDILVATPGRLMDHINA---TRGFTLEHLCYLVVDETDRLLREAYQAWLP 219
I+VATPGRL DH+ + G + L +LV+DE DRLL Y L
Sbjct: 164 ------------IVVATPGRLADHLESDSENTGKLFKKLRFLVLDEADRLLDGQYSIELK 211
Query: 220 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 279
T+L FLP +L + SAT+T
Sbjct: 212 TIL---------------NFLPKQRQTL-----------------------LFSATITSA 233
Query: 280 PNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEK----C 335
++L Q+ + P F ++ ++LE ++C +K YLV ++++ E+
Sbjct: 234 LSQLHQVSVKKPYFFED-KSEIATVDKLEQKYVLCPCAVKDAYLVYVVKNFHEKHPDSLI 292
Query: 336 IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 395
++F+ + L + + G ++ Q R+ +L FR G+I++L+ +D
Sbjct: 293 LIFSHTCRECQALAIMFHGLG---FQVGSLHSQISQQERTSSLTKFRSGRIKILICTDVA 349
Query: 396 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 433
+RG+D+ V+ V+N++ P KTYIHR GR+ARAG+ G
Sbjct: 350 SRGLDIPHVDLVINHNVPQNPKTYIHRVGRSARAGRFG 387
>gi|452002395|gb|EMD94853.1| hypothetical protein COCHEDRAFT_1128751 [Cochliobolus
heterostrophus C5]
Length = 815
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 114/443 (25%), Positives = 206/443 (46%), Gaps = 72/443 (16%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL--SNRAV 99
L ++G + P+Q + + + +D+ + TGSGKT ++ +PI++ L + +
Sbjct: 303 GLASVGFTEPTPIQ----SKAVPIAMQGKDVVGGAETGSGKTAAFLIPILERLLYRQKKI 358
Query: 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 159
R + +PTR+LA+Q +V +A ++ L G S ++ + L RP
Sbjct: 359 PTTRVAIFMPTRELAVQCFNVATKLASFTDITFALMAGGFSSREQEAVLKTRP------- 411
Query: 160 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 219
D+++ATPGR +DH++ T F +E+L LV+DE DR+L E +++ L
Sbjct: 412 --------------DVVIATPGRFIDHMHNTAAFQVENLEILVLDEADRMLEEGFESQLN 457
Query: 220 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 279
+L T +P + + M+ SAT+T
Sbjct: 458 EIL---------------TTIPKSRQT-----------------------MLFSATMTSS 479
Query: 280 PNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESK--LKPLYLVALLQSLGEEKCIV 337
+KL ++ + P+ L + + + + + + K + YL+ + + + EK IV
Sbjct: 480 VDKLIRIGMDKPVRLMVDSKKQTVKGLTQEFVRLRQGKEDKRLAYLMYICEKIYTEKVIV 539
Query: 338 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTR 397
F + HR+ + G +K E G Q R + ++AFR GK L+++D +R
Sbjct: 540 FFRQKKEAHRVRVVFALCG---LKASELHGNMSQEQRIQAVEAFRSGKSSYLLATDVASR 596
Query: 398 GMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADND 457
G+D++ V+ V+NY+ P + Y+HR GRTARAG+ GR TL + + K K+ ++ +
Sbjct: 597 GLDIKNVSTVINYEAPQTHEIYLHRVGRTARAGRSGRACTLAAEPDRKVVKQAVKASREQ 656
Query: 458 SCPIHS--IPSSLIESLRPVYKS 478
+ S +P+ E KS
Sbjct: 657 GAKVVSRQVPAEETEKWMKKIKS 679
>gi|422294697|gb|EKU21997.1| ATP-dependent RNA helicase DDX23/PRP28 [Nannochloropsis gaditana
CCMP526]
Length = 820
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 135/429 (31%), Positives = 201/429 (46%), Gaps = 69/429 (16%)
Query: 39 LKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQT-LSNR 97
L+ ++ MG P+Q A I G+ RD+ + TGSGKT ++A+P++ L+
Sbjct: 397 LRKTVEGMGWKEPSPIQRAA----IPVGMGRRDIIGIAETGSGKTGAFAIPMINYCLTLP 452
Query: 98 AVRCLR-------ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIK 150
A R ALV+ PTR+LA Q++ A + GL VG I
Sbjct: 453 AEHRTRTPEEGPLALVMAPTRELAEQIEAQVAILIEGTGLKSCSGVGGKPI--------- 503
Query: 151 RPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 210
ED L+ VDIL+ TPGRL D I+ +R L Y+V+DE DR++
Sbjct: 504 ------------EDQAFALREGVDILIGTPGRLKDLID-SRYLVLNQCNYIVLDEADRMV 550
Query: 211 REAYQ----AWLPTVLQLTRSDNE---NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKP 263
++ A L T+ L +S+NE +R +DA+ K +
Sbjct: 551 DMGFEEQVVAVLDTMGGLLKSENEEEADRQADAAQ---------------------KGEQ 589
Query: 264 YPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYL 323
R+ M SAT+ ++A+ L P + GE +R+E + K +
Sbjct: 590 LYRVTAM-FSATMPPAVERIARSYLRAPATIKIGEANSGKNKRIEQRLIFTTEPGKRKAV 648
Query: 324 VALLQS-LGEEKCIVFTSSVESTHRLCTLL-NHFGELRIKIKEYSGLQRQSVRSKTLKAF 381
V LL S E+K IVF ++ R C +L H + RI G + Q R +L+AF
Sbjct: 649 VDLLTSPKKEDKFIVFVNA----KRACDVLARHLEQTRISCGILHGGKSQDQREASLEAF 704
Query: 382 REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK 441
R G VLV++D RG+D+ V++V+NYD PA I+ Y HR GRT RAG+ G TLL +
Sbjct: 705 RNGVFTVLVATDVAARGLDIPDVSHVINYDMPAKIENYCHRIGRTGRAGKEGLATTLLTE 764
Query: 442 DEVKRFKKL 450
++ + F L
Sbjct: 765 NDSEVFHDL 773
>gi|399077018|ref|ZP_10752254.1| DNA/RNA helicase, superfamily II [Caulobacter sp. AP07]
gi|398036112|gb|EJL29334.1| DNA/RNA helicase, superfamily II [Caulobacter sp. AP07]
Length = 663
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 130/426 (30%), Positives = 193/426 (45%), Gaps = 79/426 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P A+ + G ++ P+Q A I L +D+ + TG+GKT ++ LP++ L
Sbjct: 9 LSPTTLQAVADTGYTTATPIQAAA----IPVALAGQDVLGIAQTGTGKTAAFTLPMIDKL 64
Query: 95 -SNRA-VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
S RA R RALV+ PTR+LA QV F A LS L +G S D++
Sbjct: 65 ASGRAKARMPRALVIAPTRELADQVASSFEKYAKGTKLSWALLIGGVSFGDQV------- 117
Query: 153 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE 212
++L VD+L+ATPGRL+DH G + + +VVDE DR+L
Sbjct: 118 --------------KKLDRGVDVLIATPGRLLDHFERG-GLLMTGVQIMVVDEADRMLDM 162
Query: 213 AYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVL 272
F+P +ER FK P P+ +
Sbjct: 163 G-------------------------FIPD------------IERIFKMTP-PKKQTLFF 184
Query: 273 SATLTQDPNKLAQLDLHHPLFL------TTGETRYKLPERLESYKLICESKLKPLYLVAL 326
SAT+ + +L + L P+ + TT E +L ++ S + K K L L AL
Sbjct: 185 SATMPPEITRLTKQFLRDPVRIEASRPATTNENITQLMVKVPS----SDPKAKRLALRAL 240
Query: 327 LQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 386
++ E IVF + + L G G QS R KTL AFR+G +
Sbjct: 241 IEKAQIETGIVFCNRKTEVDVVAKSLKSHG---FDAAAIHGDLDQSQRMKTLAAFRDGSL 297
Query: 387 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 446
++LV+SD RG+D+ V++V NYD P + Y+HR GRT RAG+ G + L+ + K
Sbjct: 298 KILVASDVAARGLDIPAVSHVFNYDVPHHADDYVHRIGRTGRAGRSGIAYMLVTPADDKG 357
Query: 447 FKKLLQ 452
F K+++
Sbjct: 358 FDKVVK 363
>gi|242014121|ref|XP_002427746.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
corporis]
gi|212512187|gb|EEB15008.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
corporis]
Length = 821
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 137/488 (28%), Positives = 214/488 (43%), Gaps = 88/488 (18%)
Query: 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFE-RDLCINS 76
P+ +F + + L +K ++MG++ QV QE P L + +D I S
Sbjct: 246 PIKEDVFSNLKFEDLNLHSYMVKYLKESMGLT-----QVTTVQEKSIPVLLDGKDALIRS 300
Query: 77 PTGSGKTLSYALPIVQTLSNRAVRCLRA-----LVVLPTRDLALQVKDVFAAIAPAVGLS 131
TGSGKTL++ALP++ L + R+ L+VLPTR+LALQ +VF + +
Sbjct: 301 QTGSGKTLAFALPMLHKLQEIRPKITRSDGILSLIVLPTRELALQTYEVFNKLVKSYNWL 360
Query: 132 VGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR 191
V +G KR +A L+ + IL+ TPGRL+DHI T+
Sbjct: 361 VPGYLGGGE---------KRKSKKA-----------RLRKGITILIGTPGRLIDHIQHTK 400
Query: 192 GFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ-LTRSDNENRFSDASTFLPSAFGSLKTI 250
LE + +LV+DE DRLL Y+ + T+L+ L R D D+S P LKT
Sbjct: 401 ALNLEKVSWLVIDEADRLLDMGYEKDVSTLLETLDRHD-----EDSSLLKPDY---LKTD 452
Query: 251 RRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYK-------- 302
+ K+ ++LSATL+ KLA L L P F+ +
Sbjct: 453 EEKEEKEKEKEPKRHHRQTILLSATLSPKVQKLAGLSLRDPTFVDASDKNSSCSDHVPLV 512
Query: 303 ------------LPERLESYKLICESKLKPLYLVALL----QSLGEEKCIVFTSSVESTH 346
LPE L ++ KLK + L + + + ++K ++F + +
Sbjct: 513 SSDMGAETDAMVLPESLIQKYIVTPPKLKLVSLTSFIIWNSKVSQQKKMLIFVGTQDMVD 572
Query: 347 RLCTLLN------------------------HFGELRIKIKEYSGLQRQSVRSKTLKAFR 382
LL+ +F I++ + G +QS R + K FR
Sbjct: 573 YYTELLSTVFGGVTSKNDDDGNDTKSNEGLLNFPTSDIELFKLHGNMKQSDRMEVFKTFR 632
Query: 383 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD 442
+ + VL+ +D RG+D+ V+ VV + P + Y+HR GRTAR+GQ G L +
Sbjct: 633 KSNMGVLLCTDVAARGLDLPEVDWVVQFTGPISVSDYVHRVGRTARSGQSGSSIIFLTPN 692
Query: 443 EVKRFKKL 450
E+ +KL
Sbjct: 693 EINFIRKL 700
>gi|167646708|ref|YP_001684371.1| DEAD/DEAH box helicase [Caulobacter sp. K31]
gi|167349138|gb|ABZ71873.1| DEAD/DEAH box helicase domain protein [Caulobacter sp. K31]
Length = 678
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 132/427 (30%), Positives = 195/427 (45%), Gaps = 81/427 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P A+ + G ++ P+Q A I L +D+ + TG+GKT ++ LP++ L
Sbjct: 9 LSPTTLQAVADTGYTTATPIQAAA----IPVALAGQDVLGIAQTGTGKTAAFTLPLIDKL 64
Query: 95 SN-RA-VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
N RA R RALV+ PTR+LA QV F A LS L +G S D+
Sbjct: 65 MNGRAKARMPRALVIAPTRELADQVASSFEKYAKGTKLSWALLIGGVSFGDQ-------- 116
Query: 153 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLR 211
++L VD+L+ATPGRL+DH RG + + +LVVDE DR+L
Sbjct: 117 -------------EKKLDRGVDVLIATPGRLLDHFE--RGKLLMTGVQFLVVDEADRMLD 161
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
F+P +ER FK P P+ +
Sbjct: 162 MG-------------------------FIPD------------IERIFKMTP-PKKQTLF 183
Query: 272 LSATLTQDPNKLAQLDLHHPLFL------TTGETRYKLPERLESYKLICESKLKPLYLVA 325
SAT+ + +L + L P+ + TT E +L ++ S + K K L L A
Sbjct: 184 FSATMPPEITRLTKQFLKDPVRIEASRPATTNENITQLMVKVPS----SDPKAKRLALRA 239
Query: 326 LLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 385
L++ E IVF + + L G G QS R+KTL AFR+G
Sbjct: 240 LIEKAQIETGIVFCNRKTEVDVVAKSLKSHG---FDAAAIHGDLDQSQRTKTLAAFRDGS 296
Query: 386 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 445
+++LV+SD RG+D+ V++V NYD P + Y+HR GRT RAG+ G + L+ + K
Sbjct: 297 LKILVASDVAARGLDIPAVSHVFNYDVPHHADDYVHRIGRTGRAGRSGVTYMLVTPADDK 356
Query: 446 RFKKLLQ 452
F K+++
Sbjct: 357 GFDKVVK 363
>gi|429856827|gb|ELA31721.1| ATP-dependent RNA helicase dbp6 [Colletotrichum gloeosporioides
Nara gc5]
Length = 877
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 127/382 (33%), Positives = 186/382 (48%), Gaps = 77/382 (20%)
Query: 13 PWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFER-- 70
PW+ +P+ V+ P + ++P+ L++ G F VQ A + P R
Sbjct: 282 PWLAAPIRVAPDTRTPFSEI-GINPKAAQILESKGFKDAFAVQTAAVP-LLLPSCKHRQG 339
Query: 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG- 129
DL + + TGSGKTL+YALPIV+ +S AV LRAL+VLPTR+L Q ++VF A A
Sbjct: 340 DLLVAAATGSGKTLAYALPIVRDISQGAVTRLRALIVLPTRELVKQAQEVFELCAGAFDG 399
Query: 130 -----LSVGLAVGQSSIADEISELIKRPKLEAGICY-----------------DPE---- 163
+ +G+A+G + E + LI+R + Y DPE
Sbjct: 400 RDQKRVRIGIAIGSQQLKYEQTNLIEREEKYDPEAYQAANQRELEAWKDVEEVDPETEDS 459
Query: 164 ----------DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA 213
D + + S VD+L+ TPGRL++HIN T GF+L+++ +LVVDE D+LL ++
Sbjct: 460 TSRVEAGSLPDHIVDYTSKVDVLICTPGRLVEHINLTPGFSLDYVRWLVVDEADKLLAQS 519
Query: 214 YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273
+Q WL V+ R+ +FS R F D + K+VLS
Sbjct: 520 FQGWLDVVMPKLRT---KKFS---------------------ARDFPDSNLSGVRKVVLS 555
Query: 274 ATLTQDPNKLAQLDLHHP-LFLTTGE--------TRYKLPERL-ESYKLICESKLKPLYL 323
ATLT+D + L+ L L P L + GE + LP L ES + ++ LKPLYL
Sbjct: 556 ATLTRDLSLLSGLQLRRPQLIVLEGEKADGTAPIAEHTLPTLLKESAIRVHDANLKPLYL 615
Query: 324 VALLQSLGEEKCIVFTSSVEST 345
+ LL LG +S E+T
Sbjct: 616 IDLL--LGGHLMSEASSKAEAT 635
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 72/121 (59%), Gaps = 1/121 (0%)
Query: 335 CIVFTSSVESTHRLCTLLNH-FGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 393
++FT S ES RL L++ L I + Q+ S R + L+AF ++++LV+SD
Sbjct: 708 ALIFTKSNESALRLSRLISLLHPSLSPFIATLTSTQKTSDRRRALRAFASRRLRLLVASD 767
Query: 394 AMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQK 453
+ RG+D+ ++NV+NYD PA Y+HR GRTARAG++G +TL+ E F + K
Sbjct: 768 LVARGIDLPQLDNVINYDLPASAAGYVHRVGRTARAGRVGAAWTLVEDGESGWFWGKIAK 827
Query: 454 A 454
A
Sbjct: 828 A 828
>gi|451852848|gb|EMD66142.1| hypothetical protein COCSADRAFT_179496 [Cochliobolus sativus
ND90Pr]
Length = 814
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 109/415 (26%), Positives = 196/415 (47%), Gaps = 70/415 (16%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL--SNRAV 99
L ++G + P+Q + + + +D+ + TGSGKT ++ +PI++ L + +
Sbjct: 302 GLASVGFTEPTPIQ----SKAVPIAMQGKDVVGGAETGSGKTAAFLIPILERLLYRQKKI 357
Query: 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 159
R + +PTR+LA+Q +V +A ++ L G S ++ + L RP
Sbjct: 358 PTTRVAIFMPTRELAVQCFNVATKLASFTDITFALMAGGFSSREQEAVLKTRP------- 410
Query: 160 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 219
D+++ATPGR +DH++ T F +E+L LV+DE DR+L E +++ L
Sbjct: 411 --------------DVVIATPGRFIDHMHNTAAFQVENLEILVLDEADRMLEEGFESQLN 456
Query: 220 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 279
+L T +P + + M+ SAT+T
Sbjct: 457 EIL---------------TTIPKSRQT-----------------------MLFSATMTSS 478
Query: 280 PNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP--LYLVALLQSLGEEKCIV 337
+KL ++ + P+ L + + + + + + K YL+ + + + EK IV
Sbjct: 479 VDKLIRIGMDKPVRLMVDAKKQTVKGLTQEFVRLRQGKEDKRLAYLMYICEKIYTEKVIV 538
Query: 338 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTR 397
F + HR+ + G +K E G Q R + ++AFR GK L+++D +R
Sbjct: 539 FFRQKKEAHRVRVVFALCG---LKASELHGNMSQEQRIQAVEAFRSGKSSYLLATDVASR 595
Query: 398 GMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 452
G+D++ V+ V+NY+ P + Y+HR GRTARAG+ GR TL + + K K+ ++
Sbjct: 596 GLDIKNVSTVINYEAPQTHEIYLHRVGRTARAGRSGRACTLAAEPDRKVVKQAVK 650
>gi|329847732|ref|ZP_08262760.1| putative ATP-dependent RNA helicase rhlE [Asticcacaulis
biprosthecum C19]
gi|328842795|gb|EGF92364.1| putative ATP-dependent RNA helicase rhlE [Asticcacaulis
biprosthecum C19]
Length = 606
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 125/420 (29%), Positives = 193/420 (45%), Gaps = 72/420 (17%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P L + L+ G PVQ + I L DL + TG+GKT ++ALPI+Q L
Sbjct: 9 LSPTLLMTLEREGYEKPTPVQA----QAIPYLLKGHDLLGIAQTGTGKTAAFALPILQHL 64
Query: 95 -SNRAV---RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIK 150
SNR + + +RAL++ PTR+LA Q+ + F + +GL + G
Sbjct: 65 LSNRKMPSPKMVRALILSPTRELASQIAESFKTYSKGMGLQIATIYG------------- 111
Query: 151 RPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 210
G+ Y P+ + L +D+LV TPGRL+DHI + L + V+DE D++L
Sbjct: 112 ------GVKYGPQ--YKALLGGLDVLVCTPGRLIDHIE-QKTVDLSQVECFVLDEADQML 162
Query: 211 REAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270
+ + V +N F A+ +P G
Sbjct: 163 DLGFVKPIRQVASRLPKKRQNLFFSAT--MPKEIG------------------------- 195
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL 330
VL++ L DP ++ +T T ER+ L E++ K L +
Sbjct: 196 VLASELLTDPKRVE---------ITPEAT---TAERVSQQVLFIEAQRKRALLSEMYADA 243
Query: 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 390
E+ +VFT + S R+ L G ++ G + QS R + L+AFR GK++ LV
Sbjct: 244 VLERTLVFTRTKRSADRVAAYLQAGG---VEAAAIHGDKNQSQRERALQAFRAGKVRALV 300
Query: 391 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
++D RG+DV+ V++V+NY+ P + Y+HR GRTARAG+ G TL DE + K +
Sbjct: 301 ATDIAARGIDVDNVSHVINYELPNVAEAYVHRIGRTARAGKSGVSITLCADDERRLLKDI 360
>gi|123503211|ref|XP_001328468.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
gi|121911411|gb|EAY16245.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
Length = 473
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 120/418 (28%), Positives = 203/418 (48%), Gaps = 54/418 (12%)
Query: 43 LQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCL 102
LQN ++ FPVQVAV ++ + DL I PTGSGKTL+Y +PI+ L R V+ L
Sbjct: 20 LQNNDYNAPFPVQVAVLEKFFASDV---DLAIGFPTGSGKTLAYLIPIISCLYKRIVQRL 76
Query: 103 RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDP 162
RA++V+P R+LA+QV +V A+ L+ + + + E S P
Sbjct: 77 RAIIVVPNRELAIQVYNVVCALIQNSKLTCAI-LSSNYWCGESSSYTNVP---------- 125
Query: 163 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 222
DI + + L ++ L + Y+V+DE D +L + + WL V
Sbjct: 126 -----------DIYICSSLSLSSYLLDVDDKLLSDIEYIVLDEGDVILEQPLENWLDHVQ 174
Query: 223 QLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 282
+ SD +P F TI V KD+ R+ K++ SATL+++ +
Sbjct: 175 RSLNSDP----------IPEKF----TIPL--VTAPPKDR---RIRKILCSATLSRNSKQ 215
Query: 283 LAQLDLHHP-LFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 341
+ P + +++ ++RY +P L+ +I E + KP A+LQSL +
Sbjct: 216 SEDFKMQFPEILISSDKSRYVIPNHLKEEFIIAERQNKP----AILQSLTTRFQFILCF- 270
Query: 342 VESTHRLCTLLNHFGELRIK----IKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTR 397
V +T R L N L K + E++ + +++ ++ + ++++ +D++ R
Sbjct: 271 VSTTKRAVALANIMRTLLAKTDFQVIEFAASLKSDKKNQAFESVDQNSSRLIICTDSLAR 330
Query: 398 GMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 455
G+++ ++ V+N+D PA +TYIHR GRTAR G G C T L E+ F+ ++ K D
Sbjct: 331 GINLPYIDAVINFDAPASARTYIHRIGRTARGGNSGTCVTFLLDSELILFRDIISKID 388
>gi|47217410|emb|CAG00770.1| unnamed protein product [Tetraodon nigroviridis]
Length = 456
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 114/409 (27%), Positives = 190/409 (46%), Gaps = 77/409 (18%)
Query: 44 QNMGISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNR--AVR 100
+ +GI PVQ E P + + RD + TGSGKT ++ LP++Q LS +
Sbjct: 18 KQLGIHKPTPVQ-----ENCVPAILQGRDCMGCAKTGSGKTAAFVLPVLQKLSEDPYGIF 72
Query: 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY 160
CL V+ PTR+LA Q+ + F + +GL + VG + + SEL +P
Sbjct: 73 CL---VLTPTRELAYQIAEQFRVLGKPLGLRDCIVVGGMDMVSQASELSNQPH------- 122
Query: 161 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 220
++VATPGRL DHI ++ F++ + +L++DE DRLL + +
Sbjct: 123 --------------VVVATPGRLADHIRSSSTFSMSKIQFLIMDEADRLLEQGCTDFT-- 166
Query: 221 VLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP 280
D T +P+ +T ++ SATLT
Sbjct: 167 -------------KDLETIMPALPAKRQT--------------------LLFSATLTDTL 193
Query: 281 NKLAQLDLHHPLFL-TTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEE----KC 335
+L + ++ P F + ETR + L+ ++ K+K YLV L+Q+ ++
Sbjct: 194 QELKNIAMNKPFFWESKSETRT--VDELDQRYILTPEKVKDAYLVHLIQTFTDQHDDWSI 251
Query: 336 IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 395
I+FT++ ++ L +L F I + + +Q R L F+ ++L+++D
Sbjct: 252 IIFTNTCKNCQILTMMLQQFNFPTISL---HSMMKQKQRFANLAKFKASVYKILIATDVA 308
Query: 396 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444
RG+D+ V V+N++ P K YIHR GRTARAG+ G TL+ + ++
Sbjct: 309 ARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGVSITLVTQYDI 357
>gi|317140099|ref|XP_003189236.1| ATP-dependent RNA helicase dbp6 [Aspergillus oryzae RIB40]
Length = 858
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 122/375 (32%), Positives = 179/375 (47%), Gaps = 76/375 (20%)
Query: 2 EEAKKKSMPVLP-WMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQ 60
E+ +K S LP W+ +P+ S E P L + L++ L++ G F VQ V
Sbjct: 226 EQDEKPSYSSLPSWLANPLRTSAEEKTPFSSLGIEENVLRI-LESNGYKEAFAVQSTVIP 284
Query: 61 ETI-GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKD 119
+ G D+CI++ TGSGKTLSY LP+V L LR L+V+PTR+L Q ++
Sbjct: 285 LLLQGSKNHPGDICISAATGSGKTLSYVLPLVTALEQVPAPRLRGLIVVPTRELVKQARE 344
Query: 120 VFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV-------------- 165
A GL V AVG +I +E L++ ++ Y PE+
Sbjct: 345 ACELCAAGSGLRVASAVGNVAIKEEQRSLMRVDEV-----YGPENFKLRQQDKLTDNDWL 399
Query: 166 ---------------------LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVD 204
+++ + VDIL+ TPGRL+DHI T+GFTL+HL +LV+D
Sbjct: 400 NFSLQDYISDAGDQSESLPGYIRKAEPNVDILICTPGRLVDHIRYTKGFTLKHLEWLVID 459
Query: 205 ETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPY 264
E DRLL E++Q W+ V+ ++ + DA TF F S K + G+ KD
Sbjct: 460 EADRLLNESFQEWVDVVM-----NSLDARKDAGTF---GF-SGKFLANLGLPIQTKD--- 507
Query: 265 PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET------------------RYKLPER 306
PR K++LSAT+T+D +KL L L +P + G +Y LP R
Sbjct: 508 PR--KVILSATMTKDISKLNSLRLSNPKLVIVGSAEQATSQEDESGIHDRIGDQYTLPPR 565
Query: 307 LESYKL-ICESKLKP 320
L+ Y L + + KP
Sbjct: 566 LKEYSLSVGDGSQKP 580
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 62/89 (69%), Gaps = 1/89 (1%)
Query: 369 QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 428
+ S KTL A+R+GKI +++++D +RG+D++ + +VVNYD P I TY+HR GRTAR
Sbjct: 721 NKSSASRKTLTAYRQGKISIIIATDRASRGLDLQSLTHVVNYDVPTSITTYVHRVGRTAR 780
Query: 429 AGQLGRCFTLLHKDEVKRF-KKLLQKADN 456
AG+ G +TL+ E + F +++Q +DN
Sbjct: 781 AGREGSAWTLVAHREGRWFTNEVIQTSDN 809
>gi|238483821|ref|XP_002373149.1| DEAD/DEAH box helicase, putative [Aspergillus flavus NRRL3357]
gi|220701199|gb|EED57537.1| DEAD/DEAH box helicase, putative [Aspergillus flavus NRRL3357]
Length = 870
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 122/375 (32%), Positives = 179/375 (47%), Gaps = 76/375 (20%)
Query: 2 EEAKKKSMPVLP-WMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQ 60
E+ +K S LP W+ +P+ S E P L + L++ L++ G F VQ V
Sbjct: 226 EQDEKPSYSSLPSWLANPLRTSAEEKTPFSSLGIEENVLRI-LESNGYKEAFAVQSTVIP 284
Query: 61 ETI-GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKD 119
+ G D+CI++ TGSGKTLSY LP+V L LR L+V+PTR+L Q ++
Sbjct: 285 LLLQGSKNHPGDICISAATGSGKTLSYVLPLVTALEQVPAPRLRGLIVVPTRELVKQARE 344
Query: 120 VFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV-------------- 165
A GL V AVG +I +E L++ ++ Y PE+
Sbjct: 345 ACELCAAGSGLRVASAVGNVAIKEEQRSLMRVDEV-----YGPENFKLRQQDKLTDNDWL 399
Query: 166 ---------------------LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVD 204
+++ + VDIL+ TPGRL+DHI T+GFTL+HL +LV+D
Sbjct: 400 NFSLQDYISDAGDQSESLPGYIRKAEPNVDILICTPGRLVDHIRYTKGFTLKHLEWLVID 459
Query: 205 ETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPY 264
E DRLL E++Q W+ V+ ++ + DA TF F S K + G+ KD
Sbjct: 460 EADRLLNESFQEWVDVVM-----NSLDARKDAGTF---GF-SGKFLANLGLPIQTKD--- 507
Query: 265 PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET------------------RYKLPER 306
PR K++LSAT+T+D +KL L L +P + G +Y LP R
Sbjct: 508 PR--KVILSATMTKDISKLNSLRLSNPKLVIVGSAEQATSREDESGIHDRIGDQYTLPPR 565
Query: 307 LESYKL-ICESKLKP 320
L+ Y L + + KP
Sbjct: 566 LKEYSLSVGDGSQKP 580
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 62/89 (69%), Gaps = 1/89 (1%)
Query: 369 QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 428
+ S KTL A+R+GKI +++++D +RG+D++ + +VVNYD P I TY+HR GRTAR
Sbjct: 733 NKSSASRKTLTAYRQGKISIIIATDRASRGLDLQSLTHVVNYDVPTSITTYVHRVGRTAR 792
Query: 429 AGQLGRCFTLLHKDEVKRF-KKLLQKADN 456
AG+ G +TL+ E + F +++Q +DN
Sbjct: 793 AGREGSAWTLVAHREGRWFTNEVIQTSDN 821
>gi|320157377|ref|YP_004189756.1| ATP-dependent RNA helicase SrmB [Vibrio vulnificus MO6-24/O]
gi|319932689|gb|ADV87553.1| ATP-dependent RNA helicase SrmB [Vibrio vulnificus MO6-24/O]
Length = 408
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 134/446 (30%), Positives = 207/446 (46%), Gaps = 78/446 (17%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LDP L A++ MG P Q+ E I L RD+ ++PTG+GKT ++ LP +Q L
Sbjct: 10 LDPNLLAAIEEMGYER--PTQIQA--EAIPQALEGRDILASAPTGTGKTAAFVLPALQYL 65
Query: 95 SN---RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
+ R R L++ PTR+LA+QV D A+A L++ G
Sbjct: 66 QDFPRRKPGPARVLILTPTRELAMQVADQARALAKNTSLNIFTITG-------------- 111
Query: 152 PKLEAGICY-DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 210
G+ Y + D+L Q DI+VATPGRLM++I A R F + +L++DE DR+L
Sbjct: 112 -----GVQYQEHADILATTQ---DIVVATPGRLMEYIQAER-FDCRAIEWLILDEADRML 162
Query: 211 REAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270
+ PTV +L+ NE R+ T L SA T+ GVE GF
Sbjct: 163 DMGFA---PTVDRLS---NECRWR-KQTMLFSA-----TLEGKGVE-GF----------- 198
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL 330
+A L DP A +D E + +++ + +S L L+ + +
Sbjct: 199 --TADLLNDP---ADID---------AEPSRRERKKITQWYYRADSMEHKLALLKDIINN 244
Query: 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 390
E+ IVF + E RL L H ++ G Q R+ + FR+G + VL+
Sbjct: 245 QAERTIVFLKTRE---RLADLRAHLESEQVNCAWIQGEMPQDRRNNAIARFRDGSVNVLL 301
Query: 391 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
++D RG+D+ V++VVN+D P Y+HR GRTARAG+ G +++ + ++
Sbjct: 302 ATDVAARGIDLPDVSHVVNFDMPRSADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDRV 361
Query: 451 LQKADNDSCPIHSIPSSLIESLRPVY 476
+ D I ++ LRP +
Sbjct: 362 ARYVKED------IKERFVKELRPQH 381
>gi|388580558|gb|EIM20872.1| DEAD-domain-containing protein [Wallemia sebi CBS 633.66]
Length = 801
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 123/459 (26%), Positives = 222/459 (48%), Gaps = 82/459 (17%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGP-GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 100
A+ +G + P+Q +T+ P L +D+ + TGSGKT ++ LP+++ L R
Sbjct: 219 AISGLGFTHPTPIQ-----KTVMPVALAGKDVVGQAVTGSGKTAAFILPVLERLMYRPKT 273
Query: 101 C-----LRALVVLPTRDLALQVKDVFAAIAPAVG-LSVGLAVGQSSIADEISELIKRPKL 154
R LV+ PTR+LA Q +V +++ +G +S L VG S+ + +L +RP
Sbjct: 274 SSKGGETRVLVLCPTRELAQQCFEVGQSLSKFMGDISFCLCVGGLSLKLQEQQLKQRP-- 331
Query: 155 EAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY 214
D+++ATPGRL+DH+ + FTL+ L L++DE DR+L + +
Sbjct: 332 -------------------DVVIATPGRLIDHVRNSPSFTLDALDILIMDEADRMLEDGF 372
Query: 215 QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274
+ L + ++ C P R M+ SA
Sbjct: 373 KDELDEI----------------------------VKEC---------PKNRQT-MLFSA 394
Query: 275 TLTQDPNKLAQLDLHHP--LFLTTGETRYK-LPERLESYKLICESKLKP--LYLVALLQS 329
T+T ++L +L L+ P LF+ ++ K L + + ++ LK L++L +
Sbjct: 395 TMTDKVDELVRLSLNKPVRLFVDPKKSTAKGLTQEFVRIRSNSKNDLKERTATLLSLCRR 454
Query: 330 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 389
+++ I+F S HR+ + FG + + +E G Q R L+ F+ K L
Sbjct: 455 TFKQRTIIFFRSKALAHRMRIM---FGLMELNAEELHGDLSQEQRLNALERFKNQKSDYL 511
Query: 390 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKK 449
+++D +RG+D++GV V+N+D P I+ Y+HR GRTARAG GR +L+ + + K K
Sbjct: 512 LATDLASRGLDIKGVETVINFDLPNQIEIYLHRVGRTARAGTSGRSVSLIGETDRKMLKN 571
Query: 450 LLQKA---DNDSCPIHSIPSSLIESLRPVYKSVRGGISD 485
+++++ DS +P+ ++ + + +S++ I +
Sbjct: 572 IVKRSSAQSTDSIKHRIVPTDVLSDVAELVESLQDQIDE 610
>gi|171689754|ref|XP_001909817.1| hypothetical protein [Podospora anserina S mat+]
gi|170944839|emb|CAP70951.1| unnamed protein product [Podospora anserina S mat+]
Length = 898
Score = 152 bits (383), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 119/348 (34%), Positives = 167/348 (47%), Gaps = 66/348 (18%)
Query: 14 WMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLC 73
W+ SP+ V+ + L KV LQ+ G F VQ AV + + D+
Sbjct: 297 WIASPIRVTESTTKSFEELKIAAEPAKV-LQSKGFKEAFAVQTAVLPLLLPNPDRQGDVV 355
Query: 74 INSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG---- 129
+ +PTGSGKTLSY LP++Q +S + LRAL+VLPTRDL QV+ A A A
Sbjct: 356 VAAPTGSGKTLSYVLPMIQDISYGRITNLRALIVLPTRDLVQQVQQTCEACAAAFASNGG 415
Query: 130 --LSVGLAVGQSSIADEISELIKRPKLEAGICYD-----------------PEDVLQELQ 170
+ +G AVG +E S ++++ K G D PED
Sbjct: 416 KRVKIGTAVGNKVFKEEQSAIVEK-KARYGTAEDSHSMEALSSWTASENINPED----YA 470
Query: 171 SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 230
S VD+L+ TPGRL++HI T GFTL+++ +LVVDE D+LL + +Q WL VL
Sbjct: 471 SKVDVLICTPGRLVEHIKQTPGFTLDYVRWLVVDEADKLLAQDFQQWLNLVLD------- 523
Query: 231 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPR-----LVKMVLSATLTQDPNKLAQ 285
+ VER + +P+ + K++LSAT+T D + L
Sbjct: 524 ---------------------KLSVERRPSRRVFPKSNKKGVRKVILSATMTHDISMLNL 562
Query: 286 LDLHHPLFLTTGETR---YKLPERLESYKL-ICESKLKPLYLVALLQS 329
L L P + T+ LP L+ Y + + E LKPLYLV LLQS
Sbjct: 563 LKLSRPKLVVLEGTKAGDQSLPPLLKEYAIKVREPSLKPLYLVDLLQS 610
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 67/114 (58%), Gaps = 1/114 (0%)
Query: 335 CIVFTSSVESTHRLCTLLNHF-GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 393
++FT S E+ RL LL L I + + R+ TL+AF + K+++LV+SD
Sbjct: 707 ALIFTKSNEAALRLSRLLAILVPGLAHLIGTLTSTTKTIRRTHTLRAFTQAKLRILVASD 766
Query: 394 AMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 447
+RG+D+ + +V+NYD P Y+HR GRTARAG+ G +TLL E +RF
Sbjct: 767 IASRGLDLPNLEHVINYDLPISETAYVHRVGRTARAGRAGAAWTLLEHSEARRF 820
>gi|161486658|ref|NP_933453.2| ATP-dependent RNA helicase SrmB [Vibrio vulnificus YJ016]
Length = 408
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 134/446 (30%), Positives = 207/446 (46%), Gaps = 78/446 (17%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LDP L A++ MG P Q+ E I L RD+ ++PTG+GKT ++ LP +Q L
Sbjct: 10 LDPNLLSAIEEMGYER--PTQIQA--EAIPQALEGRDILASAPTGTGKTAAFVLPALQYL 65
Query: 95 SN---RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
+ R R L++ PTR+LA+QV D A+A L++ G
Sbjct: 66 QDFPRRKPGPARVLILTPTRELAMQVADQARALAKNTSLNIFTITG-------------- 111
Query: 152 PKLEAGICY-DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 210
G+ Y + D+L Q DI+VATPGRLM++I A R F + +L++DE DR+L
Sbjct: 112 -----GVQYQEHADILATTQ---DIVVATPGRLMEYIQAER-FDCRAIEWLILDEADRML 162
Query: 211 REAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270
+ PTV +L+ NE R+ T L SA T+ GVE GF
Sbjct: 163 DMGFA---PTVDRLS---NECRWR-KQTMLFSA-----TLEGKGVE-GF----------- 198
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL 330
+A L DP A +D E + +++ + +S L L+ + +
Sbjct: 199 --TADLLNDP---ADID---------AEPSRRERKKITQWYYRADSMEHKLALLKDIINN 244
Query: 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 390
E+ IVF + E RL L H ++ G Q R+ + FR+G + VL+
Sbjct: 245 QAERTIVFLKTRE---RLADLRAHLESEQVNCAWIQGEMPQDRRNNAIARFRDGSVNVLL 301
Query: 391 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
++D RG+D+ V++VVN+D P Y+HR GRTARAG+ G +++ + ++
Sbjct: 302 ATDVAARGIDLPDVSHVVNFDMPRSADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDRV 361
Query: 451 LQKADNDSCPIHSIPSSLIESLRPVY 476
+ D I ++ LRP +
Sbjct: 362 ARYVKED------IKERFVKELRPQH 381
>gi|27363997|ref|NP_759525.1| ATP-dependent RNA helicase SrmB [Vibrio vulnificus CMCP6]
gi|27360114|gb|AAO09052.1| ATP-dependent RNA helicase SrmB [Vibrio vulnificus CMCP6]
Length = 408
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 133/446 (29%), Positives = 207/446 (46%), Gaps = 78/446 (17%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LDP L A++ MG P Q+ E I L RD+ ++PTG+GKT ++ LP +Q L
Sbjct: 10 LDPNLLAAIEEMGYER--PTQIQA--EAIPQALEGRDILASAPTGTGKTAAFVLPALQYL 65
Query: 95 SN---RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
+ R R L++ PTR+LA+QV D A+A L++ G
Sbjct: 66 QDFPRRKPGPARVLILTPTRELAMQVADQARALAKNTSLNIFTITG-------------- 111
Query: 152 PKLEAGICY-DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 210
G+ Y + D+L Q DI+VATPGRLM++I A R F + +L++DE DR+L
Sbjct: 112 -----GVQYQEHADILATTQ---DIVVATPGRLMEYIQAER-FDCRAIEWLILDEADRML 162
Query: 211 REAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270
+ PTV +L+ NE R+ T L SA T+ GVE GF
Sbjct: 163 DMGFA---PTVDRLS---NECRWR-KQTMLFSA-----TLEGKGVE-GF----------- 198
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL 330
+A L DP A +D E + +++ + ++ L L+ + +
Sbjct: 199 --TADLLNDP---ADID---------AEPSRRERKKITQWYYRADNMEHKLALLKDIINN 244
Query: 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 390
E+ IVF + E RL L H ++ G Q R+ + FR+G + VL+
Sbjct: 245 QAERTIVFLKTRE---RLADLRAHLESEQVNCAWIQGEMPQDRRNNAIARFRDGSVNVLL 301
Query: 391 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
++D RG+D+ V++VVN+D P Y+HR GRTARAG+ G +++ + ++
Sbjct: 302 ATDVAARGIDLPDVSHVVNFDMPRSADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDRV 361
Query: 451 LQKADNDSCPIHSIPSSLIESLRPVY 476
+ D I ++ LRP +
Sbjct: 362 ARYVKED------IKERFVKELRPQH 381
>gi|170095563|ref|XP_001879002.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164646306|gb|EDR10552.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 654
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 119/394 (30%), Positives = 179/394 (45%), Gaps = 75/394 (19%)
Query: 70 RDLCINSPTGSGKTLSYALPIVQTLSNR---AVRCLRALVVLPTRDLALQVKDVFAAIAP 126
+D+ + TGSGKTL++ +P+++ L R A L AL++ PTR+LA+Q+ DV +I
Sbjct: 39 KDVLGAAQTGSGKTLAFLVPVLEILYRRKWGAADGLGALIISPTRELAVQIFDVLRSIGG 98
Query: 127 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDH 186
S GL +G ++ DE L S ++ILVATPGRL+ H
Sbjct: 99 YHSFSAGLVIGGKNLKDERDRL----------------------SRMNILVATPGRLLQH 136
Query: 187 INATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS 246
++ T GF ++L LV+DE DR+L +Q L +L + LP + +
Sbjct: 137 MDQTVGFDADNLQVLVLDEADRILDMGFQKTLAALL---------------SHLPKSRQT 181
Query: 247 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL---TTGETRYKL 303
L + SAT TQ + LA+L L P+++ + +
Sbjct: 182 L-----------------------LFSATQTQSVSDLARLSLKDPVYVGINVASSSTSTM 218
Query: 304 PERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVEST----HRLCTLLNHFGELR 359
P+ LE + +ICE K L + +++ + K IVF SS + C + H G
Sbjct: 219 PQNLEQHYVICELDKKLDVLWSFIKTHLQSKIIVFMSSCKQVRFVFETFCKM--HPG--- 273
Query: 360 IKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTY 419
+ + G Q+QS R F VL ++D RG+D V+ V+ D P TY
Sbjct: 274 VPLLHLHGKQKQSARLTMYTKFSSISHAVLFATDIAARGLDFPSVDWVLQMDAPEDADTY 333
Query: 420 IHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQK 453
IHR GRTAR G+ L E + K LQK
Sbjct: 334 IHRVGRTARYESKGKALLFLMPSEEEGMKVALQK 367
>gi|78776809|ref|YP_393124.1| DEAD/DEAH box helicase [Sulfurimonas denitrificans DSM 1251]
gi|78497349|gb|ABB43889.1| DEAD/DEAH box helicase-like protein [Sulfurimonas denitrificans DSM
1251]
Length = 432
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 120/418 (28%), Positives = 196/418 (46%), Gaps = 88/418 (21%)
Query: 67 LFERDLCINSPTGSGKTLSYALPIVQTL---SNRAVRCLRALVVLPTRDLALQVKDVFAA 123
L + D+ + TG+GKT ++ L ++Q L S+ R LR LV+ PTR+L++Q+ + +
Sbjct: 36 LAKSDVFATAQTGTGKTAAFGLGMLQRLRKTSDDKQRALRGLVIAPTRELSIQIYEDLQS 95
Query: 124 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL 183
A +G+++ + VG D E + L+ VDI++ATPGR+
Sbjct: 96 YAKNMGINIAVLVGGK---------------------DLESQQKILKEGVDIVIATPGRV 134
Query: 184 MDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSA 243
++H++ +G +L H+ V+DE DR+L
Sbjct: 135 LEHVD--KGLSLSHVEIFVLDEADRML--------------------------------D 160
Query: 244 FGSLKTIRRCGVERGFKDKPYPRLVK----MVLSATLTQDPNKLAQLDLHHPLFLTTGET 299
G +K IRR +P L K ++ SAT + KL++L L P F+ T +
Sbjct: 161 MGFMKEIRRI----------HPILPKRHQTLLFSATFSDKVRKLSKLILTKPAFIETSKK 210
Query: 300 RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELR 359
+ + L+ K PL L ++ S + +VFT + S L L G
Sbjct: 211 NSTVDTINQVAYLVDTEKKAPL-LAYIIGSRNFRQVLVFTRTKASADLLVVELKKDG--- 266
Query: 360 IKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTY 419
+K G + Q+ R KTL F+EGKI+VLV++D +RG+D+E + V+NY+ P+ + Y
Sbjct: 267 LKCGIIHGDKTQANRLKTLNEFKEGKIKVLVATDIASRGLDIEELPFVINYELPSIPEDY 326
Query: 420 IHRAGRTARAGQLGRCFTLL---HKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRP 474
+HR GRT RAG+ G +L+ K ++K +KL+ IP +I P
Sbjct: 327 VHRVGRTGRAGRDGMAISLIDIYEKFDIKDIEKLIG---------MKIPQEIIAGFEP 375
>gi|323491504|ref|ZP_08096686.1| ATP-dependent RNA helicase SrmB [Vibrio brasiliensis LMG 20546]
gi|323314258|gb|EGA67340.1| ATP-dependent RNA helicase SrmB [Vibrio brasiliensis LMG 20546]
Length = 411
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 134/444 (30%), Positives = 209/444 (47%), Gaps = 78/444 (17%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LDP L +A++ MG P Q+ E I L RD+ ++PTG+GKT ++ALP +Q L
Sbjct: 10 LDPNLLLAIEEMGYDR--PTQIQA--EAIPQALDGRDVLASAPTGTGKTAAFALPALQFL 65
Query: 95 SN---RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
+ R R L++ PTR+LA+QV D A+A L++ G
Sbjct: 66 QDFPRRKPGPARVLILTPTRELAMQVADQARALAKHTNLNIFTITG-------------- 111
Query: 152 PKLEAGICY-DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 210
G+ Y + D+L Q DI+VATPGRLM++I A R F + +L++DE DR+L
Sbjct: 112 -----GVQYQEHADILATTQ---DIVVATPGRLMEYIEAER-FDCRAIEWLILDEADRML 162
Query: 211 REAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270
+ PTV +L+ +E R+ T L SA T+ GVE GF
Sbjct: 163 DMGFG---PTVDRLS---SECRWR-KQTLLFSA-----TLEGKGVE-GF----------- 198
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL 330
+A L +DP A++D E + +++ + + L L+ + +
Sbjct: 199 --TADLLKDP---AEID---------AEPSRRERKKIAQWYHRADDMTHKLELLKKILTE 244
Query: 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 390
E+ IVF + E RL L + +I G Q R+ + FR+G + VL+
Sbjct: 245 QAERSIVFLKTRE---RLAELRTELEKAQIPCAWIQGEMPQDRRNNAIARFRDGTVNVLL 301
Query: 391 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
++D RG+D+ V++V+NYD P Y+HR GRTARAG+ G +L+ + ++
Sbjct: 302 ATDVAARGIDLPDVSHVINYDMPRSADVYLHRIGRTARAGKKGNAVSLVEAHDQPMIDRV 361
Query: 451 LQKADNDSCPIHSIPSSLIESLRP 474
+ D I I+ +RP
Sbjct: 362 ARYVKED------IKERFIKEMRP 379
>gi|27366679|ref|NP_762206.1| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6]
gi|37676391|ref|NP_936787.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
gi|320158571|ref|YP_004190949.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O]
gi|27358245|gb|AAO07196.1| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6]
gi|37200933|dbj|BAC96757.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
gi|319933883|gb|ADV88746.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O]
Length = 418
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 131/427 (30%), Positives = 200/427 (46%), Gaps = 77/427 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LD L L +G ++ P+Q Q+ I L RD+ + TG+GKT +Y LP++Q L
Sbjct: 10 LDSSLSDHLSQLGFNTPTPIQ----QQAIPHLLQGRDVLAAAQTGTGKTAAYGLPLIQML 65
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
S + A + RAL++ PTR+LA QV D A L++ G +SI + +L
Sbjct: 66 SRQSREETAPKHPRALILAPTRELAQQVFDNLKQYAQHTELAIVTVYGGTSIRVQQEQLA 125
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209
K VDIL+ATPGRL+DH+ T+ +L L LV+DE DR+
Sbjct: 126 K---------------------GVDILIATPGRLLDHL-FTKKTSLNQLQMLVLDEADRM 163
Query: 210 LREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVK 269
L + LP + ++ + E R T L SA + +T + R K+ P V+
Sbjct: 164 LDMGF---LPDIQRIMKRMPEER----QTLLFSA--TFETRVKALAYRLMKE---PVEVQ 211
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329
V +A T D K + +P + K K L L+ S
Sbjct: 212 -VAAANSTADTVK----QMVYP----------------------VDKKRKSELLAYLIGS 244
Query: 330 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 389
++ +VFT + + + L + L G IK +G + Q R K L F+ GK++ L
Sbjct: 245 RNWQQVLVFTKTKQGSDALVSELKLDG---IKAASINGDKSQGARQKALDDFKSGKVRAL 301
Query: 390 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKK 449
+++D RG+D+ + VVN+D P + Y+HR GRT RAGQ G + + +DE +
Sbjct: 302 IATDVAARGLDIAQLEQVVNFDMPYKAEDYVHRIGRTGRAGQTGLAVSFMSRDE----EY 357
Query: 450 LLQKADN 456
LLQ +N
Sbjct: 358 LLQAIEN 364
>gi|268575342|ref|XP_002642650.1| Hypothetical protein CBG00032 [Caenorhabditis briggsae]
Length = 640
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 118/428 (27%), Positives = 199/428 (46%), Gaps = 65/428 (15%)
Query: 48 ISSLFPVQVAVWQETIG-----PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCL 102
IS+ FPVQ +V P L RD+ I +PTGSGKT+ Y LP++ + +R L
Sbjct: 180 ISTWFPVQYSVLPALFKDIQAPPPLRPRDVAIAAPTGSGKTICYVLPVLAAVGSRPSNSL 239
Query: 103 RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDP 162
A++++P + L Q+ + F G + +++ ++ D K + + DP
Sbjct: 240 HAVILVPVQTLVTQIVEEFRRWNGPEGTAKVVSLSGANDFD---------KEQRQLSADP 290
Query: 163 EDVLQELQSAVDILVATPGRLMDHINAT--RGFTLEHLCYLVVDETDRLLREAYQAWLPT 220
+V +VATP RL+ H+ A L L +L+VDE DR+ + + WL
Sbjct: 291 PNV----------IVATPARLVQHLTAQIPPPIDLSKLRFLIVDEADRMGKLMREEWL-- 338
Query: 221 VLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP 280
D FL G ++ R + + + P+ K+VLSATL++D
Sbjct: 339 --------------DLVEFL---CGGME--RVACLNDVIRQRRAPQ--KIVLSATLSKDV 377
Query: 281 NKLAQLDLHHPLFLTTGETRYK----------------LPERLESYKLICESKLKPLYLV 324
+L +L P + T+ K LP + ++ +SK PL +
Sbjct: 378 EELHLWNLFKPKLFSATATKAKDITSTVPMDHISGRLALPSSISHRLIVSDSKFHPLAVY 437
Query: 325 ALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 384
+Q + ++F + V S++RL +L + ++ ++ R K L+ F +
Sbjct: 438 QQIQRNKFNRTLIFVNEVSSSNRLAHVLKELSQGEFEVDYFTAQLFGKRRYKMLEKFNKN 497
Query: 385 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444
+VL+ SD + RG D+ V+ V+NY+ PA K ++HRAGRT RAGQ G ++ K+
Sbjct: 498 PNRVLICSDVLARGTDLNRVDCVINYNLPADDKLFVHRAGRTGRAGQEGYVISVGDKETK 557
Query: 445 KRFKKLLQ 452
+ F K+L+
Sbjct: 558 RLFVKMLK 565
>gi|254508223|ref|ZP_05120347.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus 16]
gi|219548840|gb|EED25841.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus 16]
Length = 403
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 135/425 (31%), Positives = 203/425 (47%), Gaps = 78/425 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LDP L +A++ MG P Q+ E I L RD+ ++PTG+GKT ++ LP +Q L
Sbjct: 3 LDPNLLLAIEEMGYDR--PTQIQA--EAIPQALDGRDILASAPTGTGKTAAFVLPALQYL 58
Query: 95 SN---RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
+ R R L++ PTR+LA+QV D A+A L++ G
Sbjct: 59 QDFPRRKPGPARILILTPTRELAMQVADQARALAKHTKLNIFTITG-------------- 104
Query: 152 PKLEAGICY-DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 210
G+ Y + D+L + Q DI+VATPGRLM++INA R F + +LV+DE DR+L
Sbjct: 105 -----GVQYQEHADILGKTQ---DIVVATPGRLMEYINAER-FDCRAIEWLVLDEADRML 155
Query: 211 REAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270
+ PTV +L+ NE R+ T L SA T+ GVE GF
Sbjct: 156 DMGFG---PTVDRLS---NECRWR-KQTLLFSA-----TLEGKGVE-GF----------- 191
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL 330
+A L +DP A +D E + +++ + + L L+ + +
Sbjct: 192 --TADLLKDP---ADID---------AEPSRRERKKIAQWYHRADDMNHKLELLKKIITD 237
Query: 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 390
E+ IVF + E RL L + +I G Q R+ + FR+G + VL+
Sbjct: 238 QAERSIVFLKTRE---RLGELRTELEKAQIPCAWIQGEMPQDRRNNAIARFRDGTVNVLL 294
Query: 391 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK------DEV 444
++D RG+D+ V++V+NYD P Y+HR GRTARAG+ G +L+ D V
Sbjct: 295 ATDVAARGIDLPDVSHVINYDMPRSADVYLHRIGRTARAGKKGNAVSLVEAHDQPMLDRV 354
Query: 445 KRFKK 449
R+ K
Sbjct: 355 ARYVK 359
>gi|37197585|dbj|BAC93424.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
Length = 441
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 134/446 (30%), Positives = 207/446 (46%), Gaps = 78/446 (17%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LDP L A++ MG P Q+ E I L RD+ ++PTG+GKT ++ LP +Q L
Sbjct: 43 LDPNLLSAIEEMGYER--PTQIQA--EAIPQALEGRDILASAPTGTGKTAAFVLPALQYL 98
Query: 95 SN---RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
+ R R L++ PTR+LA+QV D A+A L++ G
Sbjct: 99 QDFPRRKPGPARVLILTPTRELAMQVADQARALAKNTSLNIFTITG-------------- 144
Query: 152 PKLEAGICY-DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 210
G+ Y + D+L Q DI+VATPGRLM++I A R F + +L++DE DR+L
Sbjct: 145 -----GVQYQEHADILATTQ---DIVVATPGRLMEYIQAER-FDCRAIEWLILDEADRML 195
Query: 211 REAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270
+ PTV +L+ NE R+ T L SA T+ GVE GF
Sbjct: 196 DMGFA---PTVDRLS---NECRWR-KQTMLFSA-----TLEGKGVE-GF----------- 231
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL 330
+A L DP A +D E + +++ + +S L L+ + +
Sbjct: 232 --TADLLNDP---ADID---------AEPSRRERKKITQWYYRADSMEHKLALLKDIINN 277
Query: 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 390
E+ IVF + E RL L H ++ G Q R+ + FR+G + VL+
Sbjct: 278 QAERTIVFLKTRE---RLADLRAHLESEQVNCAWIQGEMPQDRRNNAIARFRDGSVNVLL 334
Query: 391 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
++D RG+D+ V++VVN+D P Y+HR GRTARAG+ G +++ + ++
Sbjct: 335 ATDVAARGIDLPDVSHVVNFDMPRSADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDRV 394
Query: 451 LQKADNDSCPIHSIPSSLIESLRPVY 476
+ D I ++ LRP +
Sbjct: 395 ARYVKED------IKERFVKELRPQH 414
>gi|307104451|gb|EFN52705.1| hypothetical protein CHLNCDRAFT_36787, partial [Chlorella
variabilis]
Length = 689
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 136/469 (28%), Positives = 217/469 (46%), Gaps = 87/469 (18%)
Query: 14 WMRSPVD-VSLFEDCPLDHLPCLDPRLKV-----------ALQNMGISSLFPVQVAVWQE 61
+ RSP SLF D + +DP L + AL+ GI+SLFP+Q V++
Sbjct: 125 FSRSPRSFASLFTDDEAEEAAVVDPSLLLVNCGLSEGSVRALEERGITSLFPIQKTVFE- 183
Query: 62 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTL--SNRAVRCLRALVVLPTRDLALQVKD 119
P + DL + TGSGKTL++A+PI++ + R +R + LV+ PTR+LA QV+
Sbjct: 184 ---PAMRGADLIARAKTGSGKTLAFAIPIIEKIMAGPRNLRKPQCLVLAPTRELAKQVER 240
Query: 120 VFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179
AA AP +G P+ L+EL+ VDI+V T
Sbjct: 241 EIAATAPGLGCGCYYGGN---------------------PIGPQ--LKELRRGVDIVVGT 277
Query: 180 PGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTF 239
PGR++D I+ L + ++V+DE D++L ++ + T+L EN + T
Sbjct: 278 PGRIIDLIDQD-ALDLSMVRFVVLDEADQMLNVGFEKDVETIL-------ENVPQERQTM 329
Query: 240 LPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET 299
L SA PR VK ++ L N +DL + G T
Sbjct: 330 LFSAT-------------------LPRWVKKLVKQYLNNPEN----IDL-----VGEGNT 361
Query: 300 RYKLPERLESYKLICESKLKPLYLVALLQSLGE-EKCIVFTSSV-ESTHRLCTLLNHFGE 357
P+ + + + +++ LV LL GE K IVFT + E+ ++ H
Sbjct: 362 GQD-PDSITALAVPADARRS--VLVDLLTVYGEGGKAIVFTQTKREADEVAASVGGH--- 415
Query: 358 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417
+ G Q R K L +FR K+ VLV++D RG+D+ V+ VV+Y+ P +
Sbjct: 416 --LPCGALHGDMSQREREKVLASFRANKLMVLVATDVAARGLDIPDVDVVVHYELPQDPE 473
Query: 418 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPS 466
+++HR+GRT RAG+ G + E+ FK++L++ + + + PS
Sbjct: 474 SFLHRSGRTGRAGKSGTAIAMFQPKEIGYFKRILRETEVQGVKLITAPS 522
>gi|357589331|ref|ZP_09127997.1| hypothetical protein CnurS_03986 [Corynebacterium nuruki S6-4]
Length = 449
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 122/414 (29%), Positives = 191/414 (46%), Gaps = 71/414 (17%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV-- 99
AL GI F +Q + T+ L +DL + TG GKTL + +P++ + + A
Sbjct: 21 ALAEKGIDRTFAIQ----ERTLPIALTGKDLIGQARTGMGKTLGFGVPLLDRVFDDADVT 76
Query: 100 ---RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 156
+RALVV+PTR+L +QV + + A + L+V G
Sbjct: 77 APDGTVRALVVVPTRELCIQVAEDLSDAAAHLPLTVTTIYG------------------- 117
Query: 157 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 216
G+ + E + L DI+V TPGRL+D ++ + L H+ LV+DE D +L + +
Sbjct: 118 GVPF--EKQTEALAHGTDIVVGTPGRLLD-LSRQQLLDLSHVEILVLDEADEMLDQGFLD 174
Query: 217 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 276
+ ++ T + A+ +P +L RGF D P V++ T
Sbjct: 175 DVKAIMAQTAPHRQTMLFSAT--MPGPIVALS--------RGFMDHP----VRIRADTTD 220
Query: 277 TQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCI 336
Q P TT +T + +S+KL S L LLQ+ G + I
Sbjct: 221 AQ------------PTHATTTQTVF------QSHKLDRMS-----VLARLLQTPGRGRTI 257
Query: 337 VFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT 396
VF + + + N +L ++ G RQ R ++L AFREG + ++V++D
Sbjct: 258 VF---ARTKRQAAMVANDLADLGFRVGAVHGDMRQKDREQSLAAFREGTVDIMVATDVAA 314
Query: 397 RGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
RG+DV+ V +V+NY P KTY+HR GRT RAG G TL+ DEV R++ +
Sbjct: 315 RGIDVDDVTHVINYQVPEDDKTYVHRIGRTGRAGHSGVAVTLVGWDEVTRWQAI 368
>gi|312129451|ref|YP_003996791.1| dead/deah box helicase domain-containing protein [Leadbetterella
byssophila DSM 17132]
gi|311905997|gb|ADQ16438.1| DEAD/DEAH box helicase domain protein [Leadbetterella byssophila
DSM 17132]
Length = 619
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 124/485 (25%), Positives = 216/485 (44%), Gaps = 100/485 (20%)
Query: 29 LDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL 88
LP D +K A++ MG + P+Q A I + RD+ + TG+GKT ++ +
Sbjct: 70 FSELPISDYIVK-AVEEMGFTESTPIQTA----AIPVVMSGRDVIGQAQTGTGKTAAFGI 124
Query: 89 PIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP-AVGLSVGLAVGQSSIADEISE 147
P ++ + N R + L++ PTR+LALQVK+ +A GL V G
Sbjct: 125 PAIEHV-NAEDRNTQVLILCPTRELALQVKEQLTLLAKYKKGLLVSAIYG---------- 173
Query: 148 LIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 207
G Y+ + L+ I+V TPGR+MDHI + L+++ +++DE D
Sbjct: 174 ---------GESYERQ--FANLKRGTQIVVGTPGRIMDHIEK-KTLKLDNISMVILDEAD 221
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
+L ++ + +L + D + T L SA S + + + + F++ P +
Sbjct: 222 EMLNMGFREDIEQILSFAKEDRQ-------TVLFSATMSKEIL---NITKKFQNDP--EI 269
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL------ESYKLICESKLKPL 321
VK+ ++ ++ +L E +++L RL + + C +K K
Sbjct: 270 VKVT--------RKEITNTNIEQSYYLVKKEAKFELMVRLIDVHDLQLMLVFCNTKSKVD 321
Query: 322 YLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 381
+V LQ+ G + E H G RQ+ R++ + F
Sbjct: 322 EIVEELQANG--------YAAEGLH--------------------GDMRQAARNQVMNKF 353
Query: 382 REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK 441
R G ++LV++D RG+DV GV+ V+NYD P ++ Y+HR GRT RAG+LG+ F + K
Sbjct: 354 RNGNTKILVATDVAARGIDVSGVDAVINYDLPMDLEYYVHRIGRTGRAGKLGKAFLFITK 413
Query: 442 DEVKRFKKLLQ-------------KADNDSCPIH----SIPSSLIESLRPVYKSVRGGIS 484
+ R + L Q AD + I+ I +++E P ++ + +
Sbjct: 414 RDRSRMRDLEQYTKVAIPQGKIPTSADLEKSRINKFVEKIRENIVEDTNPAFEKIVDQLK 473
Query: 485 DEAFW 489
+E F+
Sbjct: 474 EEGFY 478
>gi|83945168|ref|ZP_00957517.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Oceanicaulis sp. HTCC2633]
gi|83851338|gb|EAP89194.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Oceanicaulis sp. HTCC2633]
Length = 466
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 121/415 (29%), Positives = 189/415 (45%), Gaps = 76/415 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQT 93
L+P + A+ G + P+Q P + + DL + TG+GKT ++ LP+V
Sbjct: 26 LNPSILTAISEQGYETPTPIQARAI-----PAVMKGHDLIGLAQTGTGKTAAFVLPLVHQ 80
Query: 94 L--SNRAV--RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
L N+ R RAL++ PTR+LA Q+++ A L+ + G
Sbjct: 81 LLAENKQAPGRSCRALILAPTRELAAQIEEQVKAYTAHTKLTSTVVFG------------ 128
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209
G+ P+ ++ L VDILVATPGRL+DH+ R L+ ++++DE D++
Sbjct: 129 -------GVKAGPQ--IKALARGVDILVATPGRLLDHLG-ERKARLDLTRFVILDEADQM 178
Query: 210 LREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVK 269
L ++P + +L R E R +
Sbjct: 179 LD---LGFIPAIRKLLRMVGEERQT----------------------------------- 200
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLP-ERLESYKLICESKLKPLYLVALLQ 328
++ SAT+ +LA L HP T T P ER++ E+ KP L+ L+
Sbjct: 201 LMFSATMAPAIRQLADDFLDHPE--TVAVTPPSKPVERIDQKVFYTEASAKPDALIDLMA 258
Query: 329 SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 388
++ I+FT + R+ L +G K G + Q+ R++ L AF+ G+ V
Sbjct: 259 PEAGKRAIIFTRTKYGADRVAKRLVKYGH---KANAIHGDKSQNQRTRALDAFKSGEAPV 315
Query: 389 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443
LV++D RG+DV+GV+ VVNY+ P + Y+HR GRTARAG GR L DE
Sbjct: 316 LVATDIAARGIDVDGVDLVVNYELPNVAENYVHRIGRTARAGASGRAVALCAPDE 370
>gi|114764595|ref|ZP_01443799.1| ATP-dependent RNA helicase RhlE [Pelagibaca bermudensis HTCC2601]
gi|114542971|gb|EAU45991.1| ATP-dependent RNA helicase RhlE [Roseovarius sp. HTCC2601]
Length = 502
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 130/434 (29%), Positives = 201/434 (46%), Gaps = 84/434 (19%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+P++ A++ G + P+Q I L +D+ + TG+GKT S+ LP++ +L
Sbjct: 9 LNPKVLKAIEEAGYETPTPIQAGA----IPHALEGKDVLGIAQTGTGKTASFTLPMITSL 64
Query: 95 S-NRA-VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
+ RA R R+LV+ PTR+LA QV + F A V L+ L +G
Sbjct: 65 ARGRARARMPRSLVLCPTRELAAQVAENFDTYAKYVKLTKALLIG--------------- 109
Query: 153 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLR 211
G+ + ++ L + VD+L+ATPGRL+DH RG L + +VVDE DR+L
Sbjct: 110 ----GVSFKEQEQL--IDKGVDVLIATPGRLLDHFE--RGKLILTDVKVMVVDEADRMLD 161
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
F+P +ER F P+ R +
Sbjct: 162 MG-------------------------FIPD------------IERIFSLTPFTRQT-LF 183
Query: 272 LSATLTQDPNKLAQLDLHHPLFL------TTGETRYKLPERLESYKLICESKLKPLYLVA 325
SAT+ + ++ L +P + T ET + + + E K L
Sbjct: 184 FSATMAPEIERITNTFLSNPERIEVARQATASETIEQGAVFFKGSRKDREGSEKRTVLRQ 243
Query: 326 LLQSLGEEKC---IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR 382
L+ GE KC IVF + + L +G + G QS R++TL+ FR
Sbjct: 244 LIDREGE-KCTNAIVFCNRKVDVDIVAKSLKKYG---YNAEPIHGDLDQSQRTRTLEGFR 299
Query: 383 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD 442
EG I++L++SD RG+DV V++V N+D P + + Y+HR GRT RAG+ G+ FT++
Sbjct: 300 EGSIRLLIASDVAARGLDVPSVSHVFNFDVPGHAEDYVHRIGRTGRAGREGKAFTIVVPR 359
Query: 443 EVKRF---KKLLQK 453
+ K F +KLLQK
Sbjct: 360 DEKNFEDVEKLLQK 373
>gi|170744521|ref|YP_001773176.1| DEAD/DEAH box helicase [Methylobacterium sp. 4-46]
gi|168198795|gb|ACA20742.1| DEAD/DEAH box helicase domain protein [Methylobacterium sp. 4-46]
Length = 499
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 131/439 (29%), Positives = 198/439 (45%), Gaps = 77/439 (17%)
Query: 42 ALQNMGISSLFPVQV-AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV- 99
AL G + P+Q AV Q G RDLC + TG+GKT ++ALPI+ L++
Sbjct: 16 ALAETGYVTPTPIQAQAVPQAMAG-----RDLCGIAQTGTGKTAAFALPILHRLASETPQ 70
Query: 100 -----RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
R R LV+ PTR+LA Q+ + F + S + G +I +
Sbjct: 71 RRAPRRGCRVLVLSPTRELASQIAESFGDYGKFLPFSTTVVFGGVTIGRQ---------- 120
Query: 155 EAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY 214
+ L + VDILVATPGRL+D I+ R +L+ + YLV+DE D++L +
Sbjct: 121 -----------ERALANGVDILVATPGRLLDLID-RRSLSLDAVEYLVLDEADQMLDLGF 168
Query: 215 QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274
L ++ T LP A SL F PR + L+A
Sbjct: 169 IHALKRIV---------------TLLPKARQSL-----------FFSATMPRNI-ATLAA 201
Query: 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEK 334
+DP ++A P+ T ER+E + + K L +L+ ++
Sbjct: 202 QYLRDPVQVAVT----PVATTA--------ERVEQRVVHVPTGAKQALLATILRDASIDR 249
Query: 335 CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394
+VFT + R+ L G I G + Q R + L AFR G +VLV++D
Sbjct: 250 VLVFTRTKHGADRVVRGLEKAG---IGSAAIHGNKSQPQRERALAAFRAGICRVLVATDI 306
Query: 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 454
RG+DVEGV++VVN+D P + Y+HR GRTARAG G + + DE + + + +++
Sbjct: 307 AARGIDVEGVSHVVNFDLPNVPEAYVHRIGRTARAGADGLAISFCN-DEERAYLRDIERL 365
Query: 455 DNDSCPIHSIPSSLIESLR 473
P +IP + R
Sbjct: 366 TRQKVPEMAIPEGFVPPSR 384
>gi|260433500|ref|ZP_05787471.1| putative ATP-dependent RNA helicase RhlE [Silicibacter
lacuscaerulensis ITI-1157]
gi|260417328|gb|EEX10587.1| putative ATP-dependent RNA helicase RhlE [Silicibacter
lacuscaerulensis ITI-1157]
Length = 476
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 141/471 (29%), Positives = 217/471 (46%), Gaps = 92/471 (19%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+P++ A++ G + P+Q + I P L RD+ + TG+GKT S+ LP++ L
Sbjct: 9 LNPKVLKAIEEAGYETPTPIQ----EGAIPPALEGRDVLGIAQTGTGKTASFVLPMITLL 64
Query: 95 S-NRA-VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
+ RA R R+LV+ PTR+LA QV + F + L+ L +G
Sbjct: 65 ARGRARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIG--------------- 109
Query: 153 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLR 211
G+ + +D L + VD+L+ATPGRL+DH RG L + +VVDE DR+L
Sbjct: 110 ----GVSFKEQDAL--IDRGVDVLIATPGRLLDHFE--RGKLLLTGVQIMVVDEADRMLD 161
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
F+P +ER F P+ R +
Sbjct: 162 MG-------------------------FIPD------------IERIFSLTPFTRQT-LF 183
Query: 272 LSATLTQDPNKLAQLDLHHPLFL------TTGETRYKLPERLESYKLICESKLKPLYLVA 325
SAT+ + ++ L P + T ET + ++ + E K L A
Sbjct: 184 FSATMAPEIERITDTFLSAPARIEVARQATASETIEQGVVMIKGGRRDREGSTKRKVLRA 243
Query: 326 LLQSLGEEKC---IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR 382
L+ + G+ KC I+F + L +G I G QSVR++TL+ FR
Sbjct: 244 LIDAEGD-KCTNAIIFCNRKTDVDITAKSLKKYGYDAAAI---HGDLDQSVRTRTLEGFR 299
Query: 383 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL-LHK 441
EG ++ LV+SD RG+DV V++V N+D P++ + Y+HR GRT RAG+ G+ TL +
Sbjct: 300 EGSLRFLVASDVAARGLDVPSVSHVFNFDVPSHPEDYVHRIGRTGRAGREGKAITLCTAR 359
Query: 442 DE--VKRFKKLLQKA----DNDSCPIHSIPSSLIESLRPVYKSVRGGISDE 486
DE ++ +KL+QK DN P+ + P+ E +P KS DE
Sbjct: 360 DEKALEAIEKLIQKEIPRLDN---PVEAEPAE-AEDKKPEKKSRASTRKDE 406
>gi|440798652|gb|ELR19719.1| DEAD/DEAH box helicase domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 906
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 129/428 (30%), Positives = 200/428 (46%), Gaps = 57/428 (13%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS------ 95
A+++ G P+Q+ ++I GL RDL + TGSGKT ++ LP++ +S
Sbjct: 489 AIESAGYKQPMPIQM----QSIPIGLQGRDLIGLAETGSGKTCAFVLPMLVYISKLPPMT 544
Query: 96 -NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
A AL++ PTR+LALQ++ A A A+G VG SI
Sbjct: 545 AENAADGPYALIMAPTRELALQIEQEAAKFASAMGFRTVAVVGGQSIE------------ 592
Query: 155 EAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY 214
E G L+ +IL+ATPGRL+D + R L Y+V+DE DR++ +
Sbjct: 593 EQGFS---------LRRGAEILIATPGRLVDCLE-QRYVVLNQCNYVVLDEADRMVDMGF 642
Query: 215 QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274
+ + T+L S N S+ T +L+ + V R ++ SA
Sbjct: 643 EVQVTTILDAMPSSNLK--SEDETTAEEQMAALQEEKPDHVYR----------TTVMFSA 690
Query: 275 TLTQDPNKLAQLDLHHPLFLTTGE---TRYKLPERLESYKLICESKLKPLYLVALLQSLG 331
T+ +LA+ L HP + GE K+ +R+E K + K K L+ LL S
Sbjct: 691 TMPVAVERLARKYLRHPAVIQIGEVGKAGEKIEQRVEFVKGDNDKKNK---LLNLLYSGI 747
Query: 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVS 391
+VF + ++ L +N G + +SG + Q +R + + F+ G I +LVS
Sbjct: 748 APPIMVFVNQKKNCDILSRAINKAGFRSATL--HSG-KSQELREEAMDGFKAGTIDILVS 804
Query: 392 SDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF---K 448
+D RG+DV+GV +V+NYD I Y HR GRT RAG G + + D+ F K
Sbjct: 805 TDVAGRGIDVKGVTHVINYDMAKSIADYTHRIGRTGRAGMKGVAVSFITNDDADLFYDLK 864
Query: 449 KLLQKADN 456
++LQ + N
Sbjct: 865 QMLQASGN 872
>gi|220926974|ref|YP_002502276.1| DEAD/DEAH box helicase [Methylobacterium nodulans ORS 2060]
gi|219951581|gb|ACL61973.1| DEAD/DEAH box helicase domain protein [Methylobacterium nodulans
ORS 2060]
Length = 506
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 124/438 (28%), Positives = 198/438 (45%), Gaps = 75/438 (17%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV-- 99
AL G + P+Q + + P + RDLC + TG+GKT ++ALPI+ L++
Sbjct: 16 ALAETGYVTPTPIQA----QAVPPAMTGRDLCGIAQTGTGKTAAFALPILHRLASETPAK 71
Query: 100 ----RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLE 155
R R LV+ PTR+LA Q+ D F + S + G +I +
Sbjct: 72 RAPRRGCRVLVLSPTRELASQIADSFRDYGKFLPFSTTVVFGGVTIGRQ----------- 120
Query: 156 AGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 215
+ L + +D+LVATPGRL+D ++ R +L+ + YLV+DE D++L +
Sbjct: 121 ----------ERALANGIDVLVATPGRLLDLVD-RRSLSLDSVEYLVLDEADQMLDLGFI 169
Query: 216 AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSAT 275
L ++ T LP A SL F P+ + L+A
Sbjct: 170 HALKRIV---------------TLLPKARQSL-----------FFSATMPKNI-ATLAAQ 202
Query: 276 LTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKC 335
+DP ++A P+ T ER+E + + K L +L+ ++
Sbjct: 203 YLRDPVQVAVT----PVATTA--------ERVEQRVIHVSTGAKQALLGTILRDESIDRV 250
Query: 336 IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 395
+VFT + R+ L G I G + Q R + L AFR G +VLV++D
Sbjct: 251 LVFTRTKHGADRVVRGLEKVG---IGSAAIHGNKSQPQRERALAAFRAGTCRVLVATDIA 307
Query: 396 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 455
RG+DVEGV +VVN+D P + Y+HR GRTARAG G + +++E + + + +++
Sbjct: 308 ARGIDVEGVTHVVNFDLPNVPEAYVHRIGRTARAGADGLAISFCNEEE-RAYLRDIERLT 366
Query: 456 NDSCPIHSIPSSLIESLR 473
P +IP + R
Sbjct: 367 RQKVPEMAIPVGFVPPSR 384
>gi|148678591|gb|EDL10538.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47, isoform CRA_a [Mus
musculus]
Length = 354
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 110/365 (30%), Positives = 172/365 (47%), Gaps = 66/365 (18%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 50 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 106
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 107 LAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPH------------------- 147
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 148 --IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 203
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
TFL SAT+T+ KL + L +P+
Sbjct: 204 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 227
Query: 293 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352
++Y+ E+L+ Y L SK K YLV +L L ++F S+ +T R LL
Sbjct: 228 KCAVS-SKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 286
Query: 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 412
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 287 RNLGFTAIPLH---GQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 343
Query: 413 PAYIK 417
P + K
Sbjct: 344 PTHSK 348
>gi|407645090|ref|YP_006808849.1| RNA helicase [Nocardia brasiliensis ATCC 700358]
gi|407307974|gb|AFU01875.1| RNA helicase [Nocardia brasiliensis ATCC 700358]
Length = 580
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 134/436 (30%), Positives = 197/436 (45%), Gaps = 79/436 (18%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101
AL+ GI + FP+Q A T+ L +D+ PTGSGKTL++ LP++ L+ A +
Sbjct: 27 ALRRDGIEAPFPIQAA----TVPDALAGKDVLGRGPTGSGKTLAFGLPMLARLAGAASQP 82
Query: 102 LR--ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 159
R LV++PTR+LA Q++ A A A+GL V VG + I + L +
Sbjct: 83 GRPRGLVLVPTRELAAQIERALDAPALALGLRVASVVGGAPIKRQADRLAR--------- 133
Query: 160 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 219
VD+L+ATPGRL D + R +L + +DE D + A +LP
Sbjct: 134 ------------GVDLLIATPGRLADLV-MQRSASLADVRITALDEADHM---ADMGFLP 177
Query: 220 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 279
V +L + D L SA D +LVK L + +T
Sbjct: 178 QVTKLL----DQTPKDGQRLLFSA---------------TLDGEVDKLVKRYLRSPVTHS 218
Query: 280 ---PNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCI 336
P HH LF+ R KL +R + ++ L I
Sbjct: 219 TAPPAASVATMTHHLLFV-----RDKLAKRAVASEIAAREGL----------------TI 257
Query: 337 VFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT 396
+F + RL L G I G + Q+ R++TL AF +G + VLV++D
Sbjct: 258 MFVRTKHGADRLAKQLRGVG---IPAGALHGGKAQNNRTRTLAAFADGSVPVLVTTDVAA 314
Query: 397 RGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 456
RG+ V+G++ VV+ D PA K Y+HRAGRTARAG+ G TL+ +E + + + +KA
Sbjct: 315 RGIHVDGISLVVHVDPPAESKAYLHRAGRTARAGEDGVVVTLVMDEERRDVESMTRKAGV 374
Query: 457 DSCPIHSIPS--SLIE 470
D I P +LIE
Sbjct: 375 DIKGIAVRPGDRTLIE 390
>gi|126727175|ref|ZP_01743012.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium
HTCC2150]
gi|126703603|gb|EBA02699.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium
HTCC2150]
Length = 574
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 131/431 (30%), Positives = 196/431 (45%), Gaps = 91/431 (21%)
Query: 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQT 93
LDP++ A+ G S P+Q I P L +D+ + TG+GKT S+ LP++
Sbjct: 8 SLDPKVLKAVAETGYESPTPIQAGA----IPPALEGKDVLGIAQTGTGKTASFTLPMISL 63
Query: 94 LSN-RA-VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
LS RA R R+LV+ PTR+LA QV + F A + L+ L +G
Sbjct: 64 LSKGRARARMPRSLVLAPTRELAAQVAENFDAYSKYSKLTKALLIG-------------- 109
Query: 152 PKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLL 210
G+ + +D L + VD+L+ATPGRL+DH+ RG L + +VVDE DR+L
Sbjct: 110 -----GVSFKEQDKL--IDRGVDVLIATPGRLLDHVE--RGKLLLTGVQIMVVDEADRML 160
Query: 211 REAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270
F+P +ER FK P+ R +
Sbjct: 161 DMG-------------------------FIPD------------IERIFKLTPFTRQT-L 182
Query: 271 VLSATLTQDPNKLAQLDLHHPLFL------TTGETR-----YKLPERLESYKLICESKLK 319
SAT+ + ++ L P+ + TT ET + P+R E +K K
Sbjct: 183 FFSATMAPEIERITNTFLSAPVKVEVARAATTSETITQGLIWHEPKRRE-----FGAKDK 237
Query: 320 PLYLVALLQSLGEEKC---IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSK 376
L A +++ GE KC I+F + + L G + G QS R K
Sbjct: 238 RNILRATIEAEGE-KCTNAIIFCNRKVEVDIVAKSLKKHG---YNAEPIHGDLDQSHRMK 293
Query: 377 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCF 436
L FREG+I+ L +SD RG+D+ V++V N+D P + + Y+HR GRT RAG+ G F
Sbjct: 294 VLNGFREGEIRFLCASDVAARGLDIPNVSHVFNFDVPGHAEDYVHRIGRTGRAGRTGTAF 353
Query: 437 TLLHKDEVKRF 447
T+ ++ K+
Sbjct: 354 TIATPNDAKQL 364
>gi|302785159|ref|XP_002974351.1| hypothetical protein SELMODRAFT_149865 [Selaginella moellendorffii]
gi|300157949|gb|EFJ24573.1| hypothetical protein SELMODRAFT_149865 [Selaginella moellendorffii]
Length = 523
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 122/435 (28%), Positives = 211/435 (48%), Gaps = 67/435 (15%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS- 95
P + A+Q G P+Q+A +I GL +RD+ + TGSGKT ++ +P++ +S
Sbjct: 123 PEILRAVQEAGYKKPTPIQMA----SIPLGLQQRDVIGIAGTGSGKTAAFVIPMLMYVSR 178
Query: 96 ------NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
RA+ ALV+ PT +LA Q+++ +A + ++V V +I + S+L+
Sbjct: 179 LPKMTLERAIEGPYALVMAPTTELAQQIQEETVKLAKYMDINVLSLVAGEAIGGQSSKLL 238
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLC-YLVVDETDR 208
+ +I++ATPGRL+ + +G+ + H C Y+V+DE DR
Sbjct: 239 Q---------------------GCEIVIATPGRLLHCLE--QGYAVLHQCNYVVLDEGDR 275
Query: 209 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLV 268
++ + E + DA +PS+ ++ + +D+ Y R
Sbjct: 276 MIALGF---------------EEQVIDALEAMPSS-----NMKPESEDVELEDRIY-RTT 314
Query: 269 KMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ 328
M SAT+ +LA+ L +P+ +T E + +R+ ++ + + KP L LL
Sbjct: 315 YM-FSATMPPAVERLAKKYLRNPVVVTIEE----MSKRISQKVMMVDEEEKPKRLRRLLD 369
Query: 329 SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 388
LGE IVF ++ + ++ L+ G IK+ G + Q R + FR +
Sbjct: 370 ELGEMSTIVFVNTKKQADKVSKQLHDMG---IKVATIHGGKTQQKRQTNFQDFRSKRRSC 426
Query: 389 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF- 447
L+++D + RG+DV V ++VNYD P+ ++ YIHR GRT RAG+ G T L ++ + F
Sbjct: 427 LIATDVVGRGIDVPDVGHIVNYDMPSTVEMYIHRIGRTGRAGKSGAATTFLTLNDSEVFY 486
Query: 448 --KKLLQKADNDSCP 460
K+LL + N P
Sbjct: 487 DLKQLLVRTKNPVPP 501
>gi|45361669|ref|NP_989409.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Xenopus (Silurana)
tropicalis]
gi|40787696|gb|AAH64887.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Xenopus (Silurana)
tropicalis]
Length = 479
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 114/407 (28%), Positives = 188/407 (46%), Gaps = 75/407 (18%)
Query: 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR--AVRCL 102
+GI PVQ + I P L RD + TGSGKT ++ LPI+Q LS + CL
Sbjct: 19 QLGILKPSPVQ----ENCIPPILEGRDCMGCAKTGSGKTAAFVLPILQKLSEDPFGIFCL 74
Query: 103 RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDP 162
V+ PTR+LA Q+ + F + +GL + VG + + EL ++P
Sbjct: 75 ---VLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPH--------- 122
Query: 163 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 222
+++ATPGRL DHI ++ F+++ + +LV+DE DRLL + +
Sbjct: 123 ------------VVIATPGRLADHIRSSNTFSIKKIRFLVLDEADRLLEQGCTDFT---- 166
Query: 223 QLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 282
D L + +T ++ SATLT +
Sbjct: 167 -----------QDLQVILEAVPAQRQT--------------------LLFSATLTDTLQE 195
Query: 283 LAQLDLHHPLFL-TTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEE----KCIV 337
L + ++ P F +T E R E+L+ ++ K+K YLV L+Q +E ++
Sbjct: 196 LKTIAMNKPFFWESTSEVRT--VEQLDQRYILVPEKVKDAYLVHLIQKFQDEHEDWSIMI 253
Query: 338 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTR 397
FT++ ++ L +L F + + + +Q R L F+ ++L+++D R
Sbjct: 254 FTNTCKTCQILNMMLREFSFPSVAL---HSMMKQKQRFAALAKFKSSVFKILIATDVAAR 310
Query: 398 GMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444
G+D+ V V+N++ P K YIHR GRTARAG+ G TL+ + ++
Sbjct: 311 GLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGMAITLVTQYDI 357
>gi|302818333|ref|XP_002990840.1| hypothetical protein SELMODRAFT_11027 [Selaginella moellendorffii]
gi|300141401|gb|EFJ08113.1| hypothetical protein SELMODRAFT_11027 [Selaginella moellendorffii]
Length = 583
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 122/435 (28%), Positives = 211/435 (48%), Gaps = 67/435 (15%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS- 95
P + A+Q G P+Q+A +I GL +RD+ + TGSGKT ++ +P++ +S
Sbjct: 194 PEILRAVQEAGYKKPTPIQMA----SIPLGLQQRDVIGIAGTGSGKTAAFVIPMLMYVSR 249
Query: 96 ------NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
RA+ ALV+ PT +LA Q+++ +A + ++V V +I + S+L+
Sbjct: 250 LPKMTLERAIEGPYALVMAPTTELAQQIQEETVKLAKYMDINVLSLVAGEAIGGQSSKLL 309
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLC-YLVVDETDR 208
+ +I++ATPGRL+ + +G+ + H C Y+V+DE DR
Sbjct: 310 Q---------------------GCEIVIATPGRLLHCLE--QGYAVLHQCNYVVLDEGDR 346
Query: 209 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLV 268
++ + E + DA +PS+ ++ + +D+ Y R
Sbjct: 347 MIALGF---------------EEQVIDALEAMPSS-----NMKPESEDVELEDRIY-RTT 385
Query: 269 KMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ 328
M SAT+ +LA+ L +P+ +T E + +R+ ++ + + KP L LL
Sbjct: 386 YM-FSATMPPAVERLAKKYLRNPVVVTIEE----MSKRISQKVIMVDEEEKPKRLRRLLD 440
Query: 329 SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 388
LGE IVF ++ + ++ L+ G IK+ G + Q R + FR +
Sbjct: 441 ELGEMSTIVFVNTKKQADKVSKQLHDMG---IKVATIHGGKTQQKRQTNFQDFRSKRRSC 497
Query: 389 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF- 447
L+++D + RG+DV V ++VNYD P+ ++ YIHR GRT RAG+ G T L ++ + F
Sbjct: 498 LIATDVVGRGIDVPDVGHIVNYDMPSTVEMYIHRIGRTGRAGKSGAATTFLTLNDSEVFY 557
Query: 448 --KKLLQKADNDSCP 460
K+LL + N P
Sbjct: 558 DLKQLLVRTKNPVPP 572
>gi|150005747|ref|YP_001300491.1| ATP-independent RNA helicase [Bacteroides vulgatus ATCC 8482]
gi|149934171|gb|ABR40869.1| ATP-independent RNA helicase [Bacteroides vulgatus ATCC 8482]
Length = 437
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 122/406 (30%), Positives = 191/406 (47%), Gaps = 79/406 (19%)
Query: 43 LQNMGISSLFPVQVA---VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV 99
L N+ I L P+Q A W+E +DL + SPTGSGKTL+Y LP+VQ+L +
Sbjct: 6 LANLKIERLNPMQEASINAWKEG-------KDLILLSPTGSGKTLAYLLPLVQSLK-PGI 57
Query: 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 159
++A+V++P+R+LALQ+ VF ++ ++ +S RP +E
Sbjct: 58 TGVQAIVLVPSRELALQIDQVFKSM--------------NTPFKAVSCYGGRPAMEE--- 100
Query: 160 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 219
++ +Q +V ++ TPGR+ DH+ + + F + + LV+DE D+ L +Q +
Sbjct: 101 ---HRTIKGMQPSV--IIGTPGRMNDHL-SKQNFDADTVTTLVIDEFDKCLEFGFQEEMA 154
Query: 220 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 279
TV+ G L ++R + +LSAT ++
Sbjct: 155 TVI----------------------GQLPNLQR----------------RFLLSATDAEE 176
Query: 280 PNKLAQLDLHHPL-FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVF 338
+ LD L FL E +L RL YK++ K K L LL +LG + +VF
Sbjct: 177 IPQFTGLDKTIKLNFLNPEE---QLTHRLHLYKVLSPEKDKLETLYKLLCTLGSQSTLVF 233
Query: 339 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRG 398
+ ES R+ L + + + G Q R ++L FR G VL+S+D RG
Sbjct: 234 CNHRESVERVGKYLQ---SQKFQCGIFHGGMEQDDRERSLYKFRNGSCHVLISTDLAARG 290
Query: 399 MDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444
+D+ + NVV+Y PA YIHR GRTAR G + +LH +E
Sbjct: 291 LDIPEIENVVHYHLPANEDGYIHRNGRTARWEAEGNSYVILHAEET 336
>gi|294777226|ref|ZP_06742682.1| DEAD/DEAH box helicase [Bacteroides vulgatus PC510]
gi|294448940|gb|EFG17484.1| DEAD/DEAH box helicase [Bacteroides vulgatus PC510]
Length = 439
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 122/406 (30%), Positives = 191/406 (47%), Gaps = 79/406 (19%)
Query: 43 LQNMGISSLFPVQVA---VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV 99
L N+ I L P+Q A W+E +DL + SPTGSGKTL+Y LP+VQ+L +
Sbjct: 8 LANLKIERLNPMQEASINAWKEG-------KDLILLSPTGSGKTLAYLLPLVQSLK-PGI 59
Query: 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 159
++A+V++P+R+LALQ+ VF ++ ++ +S RP +E
Sbjct: 60 TGVQAIVLVPSRELALQIDQVFKSM--------------NTPFKAVSCYGGRPAMEE--- 102
Query: 160 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 219
++ +Q +V ++ TPGR+ DH+ + + F + + LV+DE D+ L +Q +
Sbjct: 103 ---HRTIKGMQPSV--IIGTPGRMNDHL-SKQNFDADTVTTLVIDEFDKCLEFGFQEEMA 156
Query: 220 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 279
TV+ G L ++R + +LSAT ++
Sbjct: 157 TVI----------------------GQLPNLQR----------------RFLLSATDAEE 178
Query: 280 PNKLAQLDLHHPL-FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVF 338
+ LD L FL E +L RL YK++ K K L LL +LG + +VF
Sbjct: 179 IPQFTGLDKTIKLNFLNPEE---QLTHRLHLYKVLSPEKDKLETLYKLLCTLGSQSTLVF 235
Query: 339 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRG 398
+ ES R+ L + + + G Q R ++L FR G VL+S+D RG
Sbjct: 236 CNHRESVERVGKYLQ---SQKFQCGIFHGGMEQDDRERSLYKFRNGSCHVLISTDLAARG 292
Query: 399 MDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444
+D+ + NVV+Y PA YIHR GRTAR G + +LH +E
Sbjct: 293 LDIPEIENVVHYHLPANEDGYIHRNGRTARWEAEGNSYVILHAEET 338
>gi|395850554|ref|XP_003797848.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Otolemur
garnettii]
Length = 441
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 172/365 (47%), Gaps = 66/365 (18%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 43 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 99
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 100 LAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPH------------------- 140
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
+++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 141 --VVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 196
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
TFL SAT+T+ KL + L +P+
Sbjct: 197 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 220
Query: 293 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352
++Y+ E+L+ Y L SK K YLV +L L ++F S+ +T R LL
Sbjct: 221 KCAVS-SKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 279
Query: 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 412
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 280 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 336
Query: 413 PAYIK 417
P + K
Sbjct: 337 PTHSK 341
>gi|29612573|gb|AAH49396.1| Ddx49-A-prov protein, partial [Xenopus laevis]
Length = 482
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 114/407 (28%), Positives = 188/407 (46%), Gaps = 75/407 (18%)
Query: 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR--AVRCL 102
+GI PVQ + I P L RD + TGSGKT ++ LPI+Q LS + CL
Sbjct: 22 QLGILKPSPVQ----ENCIPPILEGRDCMGCAKTGSGKTAAFVLPILQKLSEDPFGIFCL 77
Query: 103 RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDP 162
V+ PTR+LA Q+ + F + +GL + +G + + EL ++P
Sbjct: 78 ---VLTPTRELAYQIAEQFRVLGKPLGLKDCIIIGGMDMVAQALELSRKPH--------- 125
Query: 163 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 222
I++ATPGRL DHI ++ F+++ + +LV+DE DRLL + +
Sbjct: 126 ------------IVIATPGRLADHIRSSNTFSIKKIRFLVMDEADRLLEQGCTDFT---- 169
Query: 223 QLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 282
D L + +T ++ SATLT +
Sbjct: 170 -----------QDLQVILEAVPAQRQT--------------------LLFSATLTDTLQE 198
Query: 283 LAQLDLHHPLFL-TTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEE----KCIV 337
L + ++ P F +T E R E+L+ ++ K+K YLV L+Q +E ++
Sbjct: 199 LKTVAMNKPFFWESTSEVRT--VEQLDQRYILVPEKVKDAYLVYLIQKFQDEHEDWSIMI 256
Query: 338 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTR 397
FT++ ++ L +L F + + + +Q R L F+ ++L+++D R
Sbjct: 257 FTNTCKTCQILNMMLREFSFPSVAL---HSMMKQKQRFAALAKFKSSVFKILIATDVAAR 313
Query: 398 GMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444
G+D+ V V+N++ P K YIHR GRTARAG+ G TL+ + ++
Sbjct: 314 GLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGMAITLVTQYDI 360
>gi|345519434|ref|ZP_08798857.1| ATP-independent RNA helicase [Bacteroides sp. 4_3_47FAA]
gi|345457170|gb|EET15176.2| ATP-independent RNA helicase [Bacteroides sp. 4_3_47FAA]
Length = 437
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 122/406 (30%), Positives = 191/406 (47%), Gaps = 79/406 (19%)
Query: 43 LQNMGISSLFPVQVA---VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV 99
L N+ I L P+Q A W+E +DL + SPTGSGKTL+Y LP+VQ+L +
Sbjct: 6 LANLKIERLNPMQEASINAWKEG-------KDLILLSPTGSGKTLAYLLPLVQSLK-PGI 57
Query: 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 159
++A+V++P+R+LALQ+ VF ++ ++ +S RP +E
Sbjct: 58 TGVQAIVLVPSRELALQIDQVFKSM--------------NTPFKAVSCYGGRPAMEE--- 100
Query: 160 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 219
++ +Q +V ++ TPGR+ DH+ + + F + + LV+DE D+ L +Q +
Sbjct: 101 ---HRTIKGVQPSV--IIGTPGRMNDHL-SKQNFDADTVTTLVIDEFDKCLEFGFQEEMA 154
Query: 220 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 279
TV+ G L ++R + +LSAT ++
Sbjct: 155 TVI----------------------GQLPNLQR----------------RFLLSATDAEE 176
Query: 280 PNKLAQLDLHHPL-FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVF 338
+ LD L FL E +L RL YK++ K K L LL +LG + +VF
Sbjct: 177 IPQFTGLDKTIKLNFLNPEE---QLTHRLHLYKVLSPEKDKLETLYKLLCTLGSQSTLVF 233
Query: 339 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRG 398
+ ES R+ L + + + G Q R ++L FR G VL+S+D RG
Sbjct: 234 CNHRESVERVGKYLQ---SQKFQCGIFHGGMEQDDRERSLYKFRNGSCHVLISTDLAARG 290
Query: 399 MDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444
+D+ + NVV+Y PA YIHR GRTAR G + +LH +E
Sbjct: 291 LDIPEIENVVHYHLPANEDGYIHRNGRTARWEAEGNSYVILHAEET 336
>gi|47937760|gb|AAH72323.1| Ddx49-A-prov protein, partial [Xenopus laevis]
Length = 429
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 113/405 (27%), Positives = 186/405 (45%), Gaps = 71/405 (17%)
Query: 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA 104
+GI PVQ + I P L RD + TGSGKT ++ LPI+Q LS
Sbjct: 25 QLGILKPSPVQ----ENCIPPILEGRDCMGCAKTGSGKTAAFVLPILQKLSEDPFGIF-C 79
Query: 105 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 164
LV+ PTR+LA Q+ + F + +GL + +G + + EL ++P
Sbjct: 80 LVLTPTRELAYQIAEQFRVLGKPLGLKDCIIIGGMDMVAQALELSRKPH----------- 128
Query: 165 VLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224
I++ATPGRL DHI ++ F+++ + +LV+DE DRLL + +
Sbjct: 129 ----------IVIATPGRLADHIRSSNTFSIKKIRFLVMDEADRLLEQGCTDFT------ 172
Query: 225 TRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 284
D L + +T ++ SATLT +L
Sbjct: 173 ---------QDLQVILEAVPAQRQT--------------------LLFSATLTDTLQELK 203
Query: 285 QLDLHHPLFL-TTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEE----KCIVFT 339
+ ++ P F +T E R E+L+ ++ K+K YLV L+Q +E ++FT
Sbjct: 204 TVAMNKPFFWESTSEVRT--VEQLDQRYILVPEKVKDAYLVYLIQKFQDEHEDWSIMIFT 261
Query: 340 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 399
++ ++ L +L F + + + +Q R L F+ ++L+++D RG+
Sbjct: 262 NTCKTCQILNMMLREFSFPSVAL---HSMMKQKQRFAALAKFKSSVFKILIATDVAARGL 318
Query: 400 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444
D+ V V+N++ P K YIHR GRTARAG+ G TL+ + ++
Sbjct: 319 DIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGMAITLVTQYDI 363
>gi|319640918|ref|ZP_07995627.1| ATP-independent RNA helicase [Bacteroides sp. 3_1_40A]
gi|317387437|gb|EFV68307.1| ATP-independent RNA helicase [Bacteroides sp. 3_1_40A]
Length = 439
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 122/406 (30%), Positives = 191/406 (47%), Gaps = 79/406 (19%)
Query: 43 LQNMGISSLFPVQVA---VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV 99
L N+ I L P+Q A W+E +DL + SPTGSGKTL+Y LP+VQ+L +
Sbjct: 8 LANLKIERLNPMQEASINAWKEG-------KDLILLSPTGSGKTLAYLLPLVQSLK-PGI 59
Query: 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 159
++A+V++P+R+LALQ+ VF ++ ++ +S RP +E
Sbjct: 60 TGVQAIVLVPSRELALQIDQVFKSM--------------NTPFKAVSCYGGRPAMEE--- 102
Query: 160 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 219
++ +Q +V ++ TPGR+ DH+ + + F + + LV+DE D+ L +Q +
Sbjct: 103 ---HRTIKGVQPSV--IIGTPGRMNDHL-SKQNFDADTVTTLVIDEFDKCLEFGFQEEMA 156
Query: 220 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 279
TV+ G L ++R + +LSAT ++
Sbjct: 157 TVI----------------------GQLPNLQR----------------RFLLSATDAEE 178
Query: 280 PNKLAQLDLHHPL-FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVF 338
+ LD L FL E +L RL YK++ K K L LL +LG + +VF
Sbjct: 179 IPQFTGLDKTIKLNFLNPEE---QLTHRLHLYKVLSPEKDKLETLYKLLCTLGSQSTLVF 235
Query: 339 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRG 398
+ ES R+ L + + + G Q R ++L FR G VL+S+D RG
Sbjct: 236 CNHRESVERVGKYLQ---SQKFQCGIFHGGMEQDDRERSLYKFRNGSCHVLISTDLAARG 292
Query: 399 MDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444
+D+ + NVV+Y PA YIHR GRTAR G + +LH +E
Sbjct: 293 LDIPEIENVVHYHLPANEDGYIHRNGRTARWEAEGNSYVILHAEET 338
>gi|156740947|ref|YP_001431076.1| DEAD/DEAH box helicase [Roseiflexus castenholzii DSM 13941]
gi|156232275|gb|ABU57058.1| DEAD/DEAH box helicase domain protein [Roseiflexus castenholzii DSM
13941]
Length = 450
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 125/462 (27%), Positives = 199/462 (43%), Gaps = 102/462 (22%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
P++ ++++G + P+Q ++ I L RD+ + TG+GKT ++ LPI+ L
Sbjct: 8 FHPQINAGIRDLGYHTPTPIQ----EQVIPHALAGRDVIGIAQTGTGKTAAFVLPILHHL 63
Query: 95 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
+RA++V PTR+LA Q++ V A+ G I+ L
Sbjct: 64 MRGPRGRVRAMIVTPTRELAEQIQGVIEALGKHTG-------------------IRSVTL 104
Query: 155 EAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREA 213
G+ Y + +Q L+ V+I V PGRL+DH+ RG TL+HL L +DE D++
Sbjct: 105 YGGVGYQGQ--IQRLRRGVEIAVVCPGRLLDHLE--RGTLTLDHLEVLTLDEADQMFD-- 158
Query: 214 YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273
+LP V ++ +R VER M+ S
Sbjct: 159 -MGFLPDVRRI-------------------------LRLAPVER----------QTMLFS 182
Query: 274 ATLTQDPNKLAQLDLHHPLFLTTGETR---------YKLPERLESYKLICESKLKPLYLV 324
AT+ LA+ L PL + G + Y +PE LK L+
Sbjct: 183 ATMPDAVRSLAREALRDPLTVQIGRSAPVATVTHAIYPVPE-----------HLKTSLLI 231
Query: 325 ALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 384
LL+ E ++FT + RL L G + G Q+ R L FR G
Sbjct: 232 ELLERTDAESVLIFTRTKHRAQRLGDTLARLG---YRATSLHGNLSQNRRQAALDGFRSG 288
Query: 385 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE- 443
+ Q+L ++D RG+DV +++V+NYD P + Y HR GRT RA + G FTL+ + +
Sbjct: 289 RYQILTATDIAARGIDVARISHVINYDMPQTAEAYTHRIGRTGRAARTGDAFTLVTRGDT 348
Query: 444 --VKRFKKLLQKA----------DNDSCPIHSIPSSLIESLR 473
V+ ++L+ + N + P+H S + S R
Sbjct: 349 AMVRAIERLIGEPLKREIVPGFDYNAAAPVHETRSDAVHSNR 390
>gi|302833349|ref|XP_002948238.1| hypothetical protein VOLCADRAFT_80160 [Volvox carteri f.
nagariensis]
gi|300266458|gb|EFJ50645.1| hypothetical protein VOLCADRAFT_80160 [Volvox carteri f.
nagariensis]
Length = 836
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 138/435 (31%), Positives = 210/435 (48%), Gaps = 70/435 (16%)
Query: 24 FEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKT 83
F L P LK A++ +G + P+Q A I L RD+C ++ TGSGKT
Sbjct: 171 FSSSSFADLNLSRPLLK-AVEALGYKTPTPIQAAC----IPLALAGRDICGSAVTGSGKT 225
Query: 84 LSYALPIVQTLSNRAVRCLRA---LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSS 140
++ALP ++ L +R R L A LV+ PTR+LA+Q+ + +A ++V L VG S
Sbjct: 226 AAFALPFLERLLHRP-RGLAATYVLVLTPTRELAVQIHSMIEKLAQFTDVTVALIVGGLS 284
Query: 141 IADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCY 200
++ + + L K P +++VATPGRL+DH+ ++ LE L
Sbjct: 285 LSVQAATLRKLP---------------------EVVVATPGRLIDHLRNSQSVGLEDLAV 323
Query: 201 LVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK 260
LV+DE DRLL ++ V+++ R + R T L SA F
Sbjct: 324 LVLDEADRLLEMGFR---DEVMEVVRCAPKKR----QTMLFSAT--------------FS 362
Query: 261 DKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP 320
D+ V+ ++S +L Q A P LT R K P + + +C
Sbjct: 363 DQ-----VRDLVSLSLKQPVRLAADAARAAPKLLTQEIVRLKGPAAAATKEAVC------ 411
Query: 321 LYLVALL-QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRI-KIKEYSGLQRQSVRSKTL 378
VAL +S + IVF S+ + HRL L FG ++ E G Q+ R ++L
Sbjct: 412 ---VALCSRSFSSGRTIVFCSTKQRAHRLKIL---FGLAKLPPAAELHGNMSQTARLESL 465
Query: 379 KAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 438
++FR G L+++D RG+D++GV VVNYD P ++TY+HR GRTARAG G TL
Sbjct: 466 ESFRRGDTAYLLATDVAARGLDIQGVEVVVNYDAPRKLETYLHRIGRTARAGAAGVAVTL 525
Query: 439 LHKDEVKRFKKLLQK 453
+ + K+L ++
Sbjct: 526 VEDGDRPLLKELTRR 540
>gi|157146569|ref|YP_001453888.1| ATP-dependent RNA helicase RhlE [Citrobacter koseri ATCC BAA-895]
gi|157083774|gb|ABV13452.1| hypothetical protein CKO_02330 [Citrobacter koseri ATCC BAA-895]
Length = 454
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 126/429 (29%), Positives = 198/429 (46%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LNPDILRAIAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 -----SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
+ R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITQQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR K P+
Sbjct: 160 RML--------------------------------DMGFIHDIRRVLA------KLPPKR 181
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R E++ + + K K L ++
Sbjct: 182 QNLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|56696327|ref|YP_166684.1| ATP-dependent RNA helicase RhlE [Ruegeria pomeroyi DSS-3]
gi|56678064|gb|AAV94730.1| ATP-dependent RNA helicase RhlE [Ruegeria pomeroyi DSS-3]
Length = 471
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 132/434 (30%), Positives = 202/434 (46%), Gaps = 84/434 (19%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+P++ A++ G + P+Q I P L RD+ + TG+GKT S+ LP++ L
Sbjct: 9 LNPKVLKAIEEAGYETPTPIQAGA----IPPALEGRDVLGIAQTGTGKTASFTLPMITLL 64
Query: 95 S-NRA-VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
+ RA R R+LV+ PTR+LA QV + F + L+ L +G
Sbjct: 65 ARGRARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIG--------------- 109
Query: 153 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLR 211
G+ + +D L + VD+L+ATPGRL+DH RG L + +VVDE DR+L
Sbjct: 110 ----GVSFKEQDAL--IDRGVDVLIATPGRLLDHFE--RGKLLLTGVQIMVVDEADRMLD 161
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
F+P +ER F P+ R +
Sbjct: 162 MG-------------------------FIPD------------IERIFSLTPFTRQT-LF 183
Query: 272 LSATLTQDPNKLAQLDLHHPLFL------TTGETRYKLPERLESYKLICESKLKPLYLVA 325
SAT+ + ++ L P + T ET + + + E+ K L A
Sbjct: 184 FSATMAPEIERITNTFLSAPARIEVARQATASETIEQGVVLFKGSRRDREASEKRAVLRA 243
Query: 326 LLQSLGEEKC---IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR 382
L+ + GE KC I+F + + L +G I G QS R++TL FR
Sbjct: 244 LIDAEGE-KCTNAIIFCNRKTDVDIVAKSLQKYGYDAAPI---HGDLDQSQRTRTLDGFR 299
Query: 383 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL-LHK 441
EGK+++LV+SD RG+DV V++V N+D P + + Y+HR GRT RAG+ G+ TL + +
Sbjct: 300 EGKLRLLVASDVAARGLDVPSVSHVFNFDVPGHPEDYVHRIGRTGRAGRDGKAITLCIPR 359
Query: 442 DE--VKRFKKLLQK 453
DE + +KL+QK
Sbjct: 360 DEKALDAIEKLIQK 373
>gi|283784562|ref|YP_003364427.1| ATP-dependent RNA helicase [Citrobacter rodentium ICC168]
gi|282948016|emb|CBG87580.1| putative ATP-dependent RNA helicase [Citrobacter rodentium ICC168]
Length = 451
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 127/429 (29%), Positives = 198/429 (46%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+P + A+ G PVQ Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LNPEILRAIAEQGYREPTPVQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 -----SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
+ R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITQQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 160 RML--------------------------------DMGFIHDIRRV-----LAKLPAKRQ 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D +LA+ LH+PL + R E++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKRLAEKLLHNPLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GQGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|336249396|ref|YP_004593106.1| ATP-dependent RNA helicase RhlE [Enterobacter aerogenes KCTC 2190]
gi|334735452|gb|AEG97827.1| ATP-dependent RNA helicase RhlE [Enterobacter aerogenes KCTC 2190]
Length = 446
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 128/429 (29%), Positives = 199/429 (46%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LNPDILRAVAEQGYVEPTPIQ----QQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQRL 63
Query: 95 SN-----RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
+ + R +RAL++ PTR+LA QV G V S I L+
Sbjct: 64 TQDQPHAKGRRPVRALILTPTRELAAQV---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VDILVATPGRL+D H NA +L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDILVATPGRLLDLEHQNAV---SLDKVEVLVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR K PR
Sbjct: 160 RML--------------------------------DMGFIHDIRRVLA------KLPPRR 181
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + + LA+ LH+PL + R E++ + + K K L L+
Sbjct: 182 QNLLFSATFSDEIKALAEKLLHNPLEVEVAR-RNTASEQITQHVHFVDKKRKRELLSQLI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GEGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGGIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ ++LL+K
Sbjct: 358 RDIERLLKK 366
>gi|444352450|ref|YP_007388594.1| ATP-dependent RNA helicase RhlE [Enterobacter aerogenes EA1509E]
gi|443903280|emb|CCG31054.1| ATP-dependent RNA helicase RhlE [Enterobacter aerogenes EA1509E]
Length = 446
Score = 148 bits (373), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 128/429 (29%), Positives = 199/429 (46%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LNPDILRAVAEQGYVEPTPIQ----QQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQRL 63
Query: 95 SN-----RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
+ + R +RAL++ PTR+LA QV G V S I L+
Sbjct: 64 TQEQPHAKGRRPVRALILTPTRELAAQV---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VDILVATPGRL+D H NA +L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDILVATPGRLLDLEHQNAV---SLDKVEVLVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR K PR
Sbjct: 160 RML--------------------------------DMGFIHDIRRVLA------KLPPRR 181
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + + LA+ LH+PL + R E++ + + K K L L+
Sbjct: 182 QNLLFSATFSDEIKALAEKLLHNPLEVEVAR-RNTASEQITQHVHFVDKKRKRELLSQLI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GEGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGGIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ ++LL+K
Sbjct: 358 RDIERLLKK 366
>gi|254466325|ref|ZP_05079736.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium Y4I]
gi|206687233|gb|EDZ47715.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium Y4I]
Length = 467
Score = 148 bits (373), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 129/433 (29%), Positives = 200/433 (46%), Gaps = 82/433 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+P++ A++ G + P+Q I P L RD+ + TG+GKT S+ LP++ L
Sbjct: 9 LNPKVLKAIEEAGYETPTPIQAGA----IPPALEGRDVLGIAQTGTGKTASFTLPMITLL 64
Query: 95 S-NRA-VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
+ RA R R+LV+ PTR+LA QV + F A V L+ L +G
Sbjct: 65 ARGRARARMPRSLVLCPTRELAAQVAENFDTYAKHVKLTKALLIG--------------- 109
Query: 153 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLR 211
G+ + +D L + VD+L+ATPGRL+DH RG L + +VVDE DR+L
Sbjct: 110 ----GVSFKEQDAL--IDKGVDVLIATPGRLLDHFE--RGKLLLTGVQIMVVDEADRMLD 161
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
F+P +ER F P+ R +
Sbjct: 162 MG-------------------------FIPD------------IERIFSLTPFTRQT-LF 183
Query: 272 LSATLTQDPNKLAQLDLHHPLFL------TTGETRYKLPERLESYKLICESKLKPLYLVA 325
SAT+ + ++ L P + T ET + +++ + E K L A
Sbjct: 184 FSATMAPEIERITNTFLSGPARIEVARQATASETIEQAVVQVKPSRRDREGSEKRTVLRA 243
Query: 326 LLQSLGEE--KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 383
L+ G++ I+F + L +G I G QS R++TL +FRE
Sbjct: 244 LIDGEGDKLTNGIIFCNRKTDVDICAKSLKKYGYDAAAI---HGDLDQSQRTRTLDSFRE 300
Query: 384 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL-LHKD 442
G +++LV+SD RG+DV V++V N+D P + + Y+HR GRT RAG+ G+ T+ +D
Sbjct: 301 GSLRILVASDVAARGLDVPSVSHVFNFDVPGHAEDYVHRIGRTGRAGREGKAITICTPRD 360
Query: 443 E--VKRFKKLLQK 453
E + +KL+QK
Sbjct: 361 EKALDAVEKLIQK 373
>gi|16126090|ref|NP_420654.1| DEAD/DEAH box helicase [Caulobacter crescentus CB15]
gi|221234860|ref|YP_002517296.1| ATP-dependent RNA helicase [Caulobacter crescentus NA1000]
gi|13423288|gb|AAK23822.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Caulobacter
crescentus CB15]
gi|220964032|gb|ACL95388.1| ATP-dependent RNA helicase [Caulobacter crescentus NA1000]
Length = 517
Score = 148 bits (373), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 130/427 (30%), Positives = 193/427 (45%), Gaps = 81/427 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P A+ + G ++ P+Q + I L +D+ + TG+GKT ++ LP++ L
Sbjct: 9 LSPTTLQAVADTGYTTATPIQA----QAIPVALAGQDVLGIAQTGTGKTAAFTLPLIDRL 64
Query: 95 -SNRA-VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
S RA R RALV+ PTR+LA QV F A LS L +G S D+
Sbjct: 65 QSGRAKARMPRALVIAPTRELADQVAASFEKYAKGTKLSWALLIGGVSFGDQ-------- 116
Query: 153 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLR 211
++L VD+L+ATPGRL+DH RG + + +LVVDE DR+L
Sbjct: 117 -------------EKKLDRGVDVLIATPGRLLDHFE--RGKLLMTGVQFLVVDEADRMLD 161
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
F+P +ER FK P P+ +
Sbjct: 162 MG-------------------------FIPD------------IERIFKMTP-PKKQTLF 183
Query: 272 LSATLTQDPNKLAQLDLHHPLFL------TTGETRYKLPERLESYKLICESKLKPLYLVA 325
SAT+ + +L + L P+ + TT +L ++ S + K K L L A
Sbjct: 184 FSATMPPEITRLTKQFLRDPVRIEVARPATTNANITQLLVKVPS----SDPKAKRLALRA 239
Query: 326 LLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 385
L++ G E IVF + + L G I G Q+ R KTL FR G
Sbjct: 240 LIEKAGIETGIVFCNRKTEVDIVAKSLKVHGYDAAPIH---GDLDQTQRMKTLADFRSGA 296
Query: 386 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 445
+++LV+SD RG+D+ V++V NYD P + Y+HR GRT RAG+ G + L+ + K
Sbjct: 297 LKILVASDVAARGLDIPAVSHVFNYDVPHHADDYVHRIGRTGRAGRTGITYMLVTPADDK 356
Query: 446 RFKKLLQ 452
F K+++
Sbjct: 357 GFDKVIK 363
>gi|386720987|ref|YP_006187312.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus K02]
gi|384088111|gb|AFH59547.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
mucilaginosus K02]
Length = 425
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 118/401 (29%), Positives = 188/401 (46%), Gaps = 71/401 (17%)
Query: 39 LKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-NR 97
L AL G P+Q +E I L D+ + TG+GKTL++ LPI++++ NR
Sbjct: 15 LAEALHKHGYHEPTPIQ----REAIPSVLGGHDVIAQAQTGTGKTLAFVLPILESIDPNR 70
Query: 98 AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAG 157
+ ++AL+V PTR+LA+Q+ + A AP G+ V A G
Sbjct: 71 S--HVQALIVTPTRELAIQITEEVARWAPLKGIRVLSAYG-------------------- 108
Query: 158 ICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAW 217
D E +++L+ A+ I+VATPGRL+DH+ L L LV+DE D++L + +
Sbjct: 109 -GQDVERQIRKLEGAIHIIVATPGRLLDHLR-RETVQLFKLSTLVLDEADQML---HMGF 163
Query: 218 LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLT 277
LP V+++ + R + ++ SAT+
Sbjct: 164 LPEVVEIISATPTRRQT-----------------------------------LLFSATMP 188
Query: 278 QDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIV 337
+ +LA+ + P+ + R L E +E + + K L AL +++ E+ +
Sbjct: 189 ERVRQLAKEYMKPPVEIEVKAKRVTLDE-IEQIVVQTSDRGK---LDALCKAMEEDPPFL 244
Query: 338 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTR 397
+ R L + E + E G Q+ R + +K FR+ KIQ LV++D R
Sbjct: 245 GMIFCRTKLRATKLRDELDERGYAVDELHGDLTQAKREQVMKRFRDAKIQFLVATDIAAR 304
Query: 398 GMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 438
G+DVEG+ +V NYD P ++YIHR GRT RAGQ G+ T
Sbjct: 305 GLDVEGITHVYNYDIPHDAESYIHRIGRTGRAGQTGKAITF 345
>gi|408825690|ref|ZP_11210580.1| DEAD/DEAH box helicase [Streptomyces somaliensis DSM 40738]
Length = 439
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 130/449 (28%), Positives = 202/449 (44%), Gaps = 90/449 (20%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96
P L AL+ G+++ FP+Q A + L RD+ TGSGKTL++ L ++ L
Sbjct: 20 PALLRALEAEGVTAPFPIQAATLPNS----LAGRDVLGRDRTGSGKTLAFGLALLARLDG 75
Query: 97 RAVRCLR--ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
R ALV++PTR+LA QV D A A A+GL VG SI ++S L
Sbjct: 76 VRAEPKRPLALVLVPTRELAQQVTDALAPYARALGLRQATVVGGVSIGRQVSAL------ 129
Query: 155 EAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF-TLEHLCYLVVDETDRLLREA 213
++ D+LVATPGRL D + TRG L+ + V+DE D++
Sbjct: 130 ---------------RAGADVLVATPGRLRDLV--TRGDCLLDDVDVTVLDEADQMTDMG 172
Query: 214 YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273
+ + +L+LTR D + +M+ S
Sbjct: 173 FLPQITGLLELTRPDGQ--------------------------------------RMLFS 194
Query: 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEE 333
ATL ++ + L + LH P+ + T + +E + L + K + G
Sbjct: 195 ATLDRNVDSLVRRYLHDPVVHSVDPT-AGVVTSMEHHVLHVQEADKNATATEIAARDG-- 251
Query: 334 KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 393
+ I+F +++ H + L H + ++ G + Q R++TL F+EG + VLV+++
Sbjct: 252 RVIMF---LDTKHAVDRLTKHLLKSGVRASALHGGKSQPQRTRTLTQFKEGHVTVLVATN 308
Query: 394 AMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQK 453
RG+ V+ ++ VVN D PA K Y+HR GRTARAG+ G TL+ Q+
Sbjct: 309 VAARGIHVDDLDLVVNVDPPADHKDYLHRGGRTARAGESGSVVTLVLPH---------QR 359
Query: 454 ADNDSCPIHSIPSSLIESLRPVYKSVRGG 482
D DS H+ +RP +VR G
Sbjct: 360 RDMDSLMSHA-------GIRPKTTAVRSG 381
>gi|205375157|ref|ZP_03227948.1| DEAD-box ATP dependent DNA helicase [Bacillus coahuilensis m4-4]
Length = 398
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 190/405 (46%), Gaps = 82/405 (20%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVR 100
AL+ GI+ P+Q V P + E RD+ + TGSGKTL++ LP+++ + +
Sbjct: 16 ALEQQGITEPTPIQTEVI-----PLMVEGRDVIAQAKTGSGKTLAFILPMLEKVDLEKI- 69
Query: 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR--PKLEAGI 158
++ L+V PTR+LA+QV DE+ +L++ P++
Sbjct: 70 AVQGLIVAPTRELAIQV------------------------TDELKKLVELEFPEVNVLA 105
Query: 159 CYDPEDVLQELQS----AVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREA 213
Y +DV ++L + I+VATPGRL+DH+ RG L L L++DE D++L
Sbjct: 106 VYGGQDVEKQLHKLETRNIHIVVATPGRLLDHMR--RGTIDLSELDMLILDEADQML--- 160
Query: 214 YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273
+ +LP V Q+ + R + + S
Sbjct: 161 HIGFLPEVEQIIEATPPTRQT-----------------------------------ALFS 185
Query: 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEE 333
AT+++D LA+ P + + + +L E +E + + + K LV +++
Sbjct: 186 ATISKDVRTLAKRYQQQP-YTVQVKDKERLVEEIEQFVVETTDRKKLQALVEVIKETQPF 244
Query: 334 KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 393
I+F ++ +L L G L + E G Q+ R +K FR+ KIQ+L+++D
Sbjct: 245 MGIIFCRTIRRVSKLHMELKAKGFL---VDELHGDLSQAKRENVMKRFRDAKIQLLIATD 301
Query: 394 AMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 438
RG+DVEGV +V NYD P +++YIHR GRT RAG+ G T
Sbjct: 302 VAARGLDVEGVTHVYNYDIPQDVESYIHRIGRTGRAGETGMAITF 346
>gi|391229094|ref|ZP_10265300.1| DNA/RNA helicase, superfamily II [Opitutaceae bacterium TAV1]
gi|391218755|gb|EIP97175.1| DNA/RNA helicase, superfamily II [Opitutaceae bacterium TAV1]
Length = 539
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 122/425 (28%), Positives = 199/425 (46%), Gaps = 78/425 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQT 93
L+ + A MG + P+Q P + E RD+ ++ TG+GKT ++ALP++
Sbjct: 141 LNDAIAFAAAEMGYTEPTPIQAQAV-----PLVLEGRDVTGSAQTGTGKTAAFALPVLHR 195
Query: 94 LSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPK 153
L LR LV+ PTR+LALQV++ F + L+ + G
Sbjct: 196 LGAHG--RLRCLVLEPTRELALQVEEAFQKYSKYTDLTTTIVYG---------------- 237
Query: 154 LEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA 213
G+ Y + ++LQ VD+L ATPGRL+DH+ TL+ + L++DE DR+L
Sbjct: 238 ---GVGYGKQ--REDLQRGVDVLAATPGRLLDHLEQGT-LTLDSIEILILDEVDRMLD-- 289
Query: 214 YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273
+LP V ++ +++C ER + S
Sbjct: 290 -MGFLPDVKRI-------------------------VQQCPRERQ----------TLFFS 313
Query: 274 ATLTQDPNKLAQLD---LHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL 330
ATL P +LAQL L P+ + G+ R ++ + S+ L L+ LL+
Sbjct: 314 ATL---PPELAQLSSWALRDPVQIKIGQRRSPAETVSHAFYPVVASQKFDL-LIELLKRT 369
Query: 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 390
+ I+FT + R+ L + + + QR+ V + L+ F+ GK +VLV
Sbjct: 370 EFKSIIIFTRTKMGADRIAHRLQR-EQHTVGVIHSDRSQRERV--EALEGFKSGKFEVLV 426
Query: 391 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
++D RG+D+ GV++V+NYD P + Y+HR GRT RA G FTL+ +D+V+ + +
Sbjct: 427 ATDIAARGLDIAGVSHVINYDVPENAEDYVHRIGRTGRANATGDAFTLVTEDDVRDARSI 486
Query: 451 LQKAD 455
+ D
Sbjct: 487 ERYID 491
>gi|337744819|ref|YP_004638981.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus KNP414]
gi|336296008|gb|AEI39111.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
mucilaginosus KNP414]
Length = 425
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 118/401 (29%), Positives = 188/401 (46%), Gaps = 71/401 (17%)
Query: 39 LKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-NR 97
L AL G P+Q +E I L D+ + TG+GKTL++ LPI++++ NR
Sbjct: 15 LAEALHKHGYHEPTPIQ----REAIPSVLGGHDVIAQAQTGTGKTLAFVLPILESIDPNR 70
Query: 98 AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAG 157
+ ++AL+V PTR+LA+Q+ + A AP G+ V A G
Sbjct: 71 S--HVQALIVTPTRELAIQITEEVARWAPLKGIRVLSAYG-------------------- 108
Query: 158 ICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAW 217
D E +++L+ A+ I+VATPGRL+DH+ L L LV+DE D++L + +
Sbjct: 109 -GQDVERQIRKLEGAIHIIVATPGRLLDHLR-RETVQLFKLSTLVLDEADQML---HMGF 163
Query: 218 LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLT 277
LP V+++ + R + ++ SAT+
Sbjct: 164 LPEVVEIISATPTRRQT-----------------------------------LLFSATMP 188
Query: 278 QDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIV 337
+ +LA+ + P+ + R L E +E + + K L AL +++ E+ +
Sbjct: 189 ERVRQLAKEYMKPPVEIEVKAKRVTLDE-IEQIVVQTTDRGK---LDALCKAMEEDPPFL 244
Query: 338 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTR 397
+ R L + E + E G Q+ R + +K FR+ KIQ LV++D R
Sbjct: 245 GMIFCRTKLRATKLRDELDERGYAVDELHGDLTQAKREQVMKRFRDAKIQFLVATDIAAR 304
Query: 398 GMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 438
G+DVEG+ +V NYD P ++YIHR GRT RAGQ G+ T
Sbjct: 305 GLDVEGITHVYNYDIPHDAESYIHRIGRTGRAGQTGKAITF 345
>gi|198424759|ref|XP_002127650.1| PREDICTED: similar to Ddx10 protein [Ciona intestinalis]
Length = 736
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 126/447 (28%), Positives = 194/447 (43%), Gaps = 82/447 (18%)
Query: 21 VSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGS 80
V FE+ P + K L+ G SL +Q A I P + +D+ + TGS
Sbjct: 47 VEKFEEFPFA------TKTKAGLRKAGFVSLTAIQRAA----IKPAMLGKDILGAAKTGS 96
Query: 81 GKTLSYALPIVQTLSNRAVRCLR---ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVG 137
GKTL++ +PI++ L L ALV+ PTR+LA Q+ +V + S GL +G
Sbjct: 97 GKTLAFIIPILECLHKHNWNSLDGPGALVISPTRELAFQIFEVLKKVGGKHNFSAGLLIG 156
Query: 138 QSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEH 197
+++ +E + K +I++ TPGRL+ H++ T F + +
Sbjct: 157 GNNVKEEAHSVGK----------------------TNIIICTPGRLLQHMDTTSYFHMNN 194
Query: 198 LCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVER 257
L L++DE DR+L ++ L ++ EN LPS +L
Sbjct: 195 LKMLILDEADRILDMGFKTTLDAII-------EN--------LPSERQTL---------- 229
Query: 258 GFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT-GETRYKLPERLESYKLICES 316
+ SAT T+ LA+L L P +++ E ++ P+ L + CE
Sbjct: 230 -------------LFSATQTKSVKDLARLSLRDPAYISVHSEAKHSTPQGLTQRFICCEL 276
Query: 317 KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELR--IKIKEYSGLQRQSVR 374
K K L + +++ + KC+VF SS + + F +LR + G Q R
Sbjct: 277 KDKLNVLFSFIRNHQKSKCLVFVSSCKQVQ---FIFAAFCKLRPGTPMLHLHGRMNQLRR 333
Query: 375 SKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 434
+ F K VLV++D RG+D ++ VV D P TYIHRAGRTAR G
Sbjct: 334 MSVYQEFCRKKFAVLVATDIAARGLDFPEIDWVVQLDCPEDADTYIHRAGRTARYNGNGN 393
Query: 435 CFTLLHKDEVKRFKKLLQKADNDSCPI 461
+L E + K LQ N PI
Sbjct: 394 SLLVLTPTEKEAMLKHLQ---NKKVPI 417
>gi|171913474|ref|ZP_02928944.1| DEAD/DEAH box helicase-like protein [Verrucomicrobium spinosum DSM
4136]
Length = 452
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 116/413 (28%), Positives = 188/413 (45%), Gaps = 72/413 (17%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN----R 97
A+Q G S P+Q A + + D+ + TG+GKT ++ LP++ L+
Sbjct: 15 AIQEAGYSEPTPIQAAAIPQVVA----GHDMIGIAQTGTGKTAAFTLPMLHLLAQLHGQG 70
Query: 98 AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAG 157
+R ++AL++ PTR+L Q+ D A A + L V + G +RP++EA
Sbjct: 71 PLRGIKALILAPTRELVAQIHDNVRAYAKHLPLKVAMIFGGVG---------ERPQIEA- 120
Query: 158 ICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAW 217
L++ D+++ATPGRL+D + G L +LV+DE DR+L
Sbjct: 121 -----------LRAGTDLVIATPGRLIDLMGQRHG-NFNSLEFLVLDEADRMLDMG---- 164
Query: 218 LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLT 277
FLPS ++R K P R ++ SATL+
Sbjct: 165 ---------------------FLPS------------IKRIVKALPKKRQT-LLFSATLS 190
Query: 278 QDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIV 337
++ L L+HP + G+ R E + + LKP LV LL+ +V
Sbjct: 191 KEIEALTHEFLNHPKTVQIGK-RSNPAESVTQFVYEVPKHLKPALLVHLLKDPAFNMVLV 249
Query: 338 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTR 397
F+ R+ L+ +G IK + Q+ R + L F+ G +VLV++D R
Sbjct: 250 FSRMKHGADRIARHLDRYG---IKTVTLHSNRTQNQRLRALADFKSGAARVLVATDIAAR 306
Query: 398 GMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
G+DV+G+++VVNYD P + + Y+HR GRT RA +G + + ++ K L
Sbjct: 307 GIDVDGISHVVNYDFPMHAEDYVHRIGRTGRAHAVGDAISFISPEDHGPLKSL 359
>gi|373853830|ref|ZP_09596629.1| DEAD/DEAH box helicase domain protein [Opitutaceae bacterium TAV5]
gi|372473357|gb|EHP33368.1| DEAD/DEAH box helicase domain protein [Opitutaceae bacterium TAV5]
Length = 539
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 121/415 (29%), Positives = 195/415 (46%), Gaps = 78/415 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQT 93
L+ + A MG + P+Q P + E RD+ ++ TG+GKT ++ALP++
Sbjct: 141 LNDAIAFAAAEMGYTDPTPIQAQAV-----PLVLEGRDVTGSAQTGTGKTAAFALPVLHR 195
Query: 94 LSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPK 153
L LR LV+ PTR+LALQV++ F + L+ + G
Sbjct: 196 LGAHG--RLRCLVLEPTRELALQVEEAFQKYSKYTDLTTTIVYG---------------- 237
Query: 154 LEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA 213
G+ Y + ++LQ VD+L ATPGRL+DH+ TL+ + L++DE DR+L
Sbjct: 238 ---GVGYGKQ--REDLQRGVDVLAATPGRLLDHLEQGT-LTLDSIEILILDEVDRMLD-- 289
Query: 214 YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273
+LP V ++ +++C ER + S
Sbjct: 290 -MGFLPDVKRI-------------------------VQQCPRERQ----------TLFFS 313
Query: 274 ATLTQDPNKLAQLD---LHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL 330
ATL P +LAQL L P+ + G+ R ++ + S+ L L+ LL+
Sbjct: 314 ATL---PPELAQLSSWALRDPVQIKIGQRRSPAETVSHAFYPVVASQKFDL-LIELLKRT 369
Query: 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 390
+ I+FT + R+ L + + + QR+ R + L+ F+ GK +VLV
Sbjct: 370 EFKSIIIFTRTKMGADRIAHRLQR-EQHTVGVIHSDRSQRE--RVEALEGFKSGKFEVLV 426
Query: 391 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 445
++D RG+D+ GV++V+NYD P + Y+HR GRT RA G FTL+ +D+V+
Sbjct: 427 ATDIAARGLDIAGVSHVINYDVPENAEDYVHRIGRTGRANATGDAFTLVTEDDVR 481
>gi|126729580|ref|ZP_01745393.1| ATP-dependent RNA helicase RhlE [Sagittula stellata E-37]
gi|126709699|gb|EBA08752.1| ATP-dependent RNA helicase RhlE [Sagittula stellata E-37]
Length = 469
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 127/433 (29%), Positives = 198/433 (45%), Gaps = 82/433 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P++ A++ G ++ P+Q I L +D+ + TG+GKT S+ LP++ L
Sbjct: 9 LSPKVLKAIEEAGYTTPTPIQAGA----IPHALEGKDVLGIAQTGTGKTASFTLPMIHKL 64
Query: 95 S-NRA-VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
+ RA R R+LV+ PTR+LA QV + F + V L+ L +G
Sbjct: 65 ARGRARARMPRSLVLCPTRELAAQVAENFDTYSKHVKLTKALLIG--------------- 109
Query: 153 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLR 211
G+ + +DVL + VD+L+ATPGRL+DH RG L + +VVDE DR+L
Sbjct: 110 ----GVSFKEQDVL--IDKGVDVLIATPGRLLDHFE--RGKLLLTGIEIMVVDEADRMLD 161
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
F+P +ER F P+ R +
Sbjct: 162 MG-------------------------FIPD------------IERIFSLTPFTRQT-LF 183
Query: 272 LSATLTQDPNKLAQLDLHHPLFL------TTGETRYKLPERLESYKLICESKLKPLYLVA 325
SAT+ + ++ L P + T ET + + ES K L A
Sbjct: 184 FSATMAPEIERITNTFLSAPARIEVARQATASETITQGAVVFTPSRRDRESSEKRAVLRA 243
Query: 326 LLQSLGE--EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 383
L+ + GE I+F + + L +G I G QS R++TL FR+
Sbjct: 244 LIDAEGEACSNAIIFCNRKVDVDIVAKSLTKYGYNAAPIH---GDLDQSQRTRTLDGFRD 300
Query: 384 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443
G +++L++SD RG+D+ V +V N+D P++ + Y+HR GRT RAG+ G+ +T+ +
Sbjct: 301 GSVRLLIASDVAARGLDIPAVTHVFNFDVPSHAEDYVHRIGRTGRAGRSGKAYTICTPRD 360
Query: 444 VKRF---KKLLQK 453
K F +KLLQK
Sbjct: 361 EKYFDAVEKLLQK 373
>gi|339998715|ref|YP_004729598.1| ATP-dependent RNA helicase rhlE [Salmonella bongori NCTC 12419]
gi|339512076|emb|CCC29797.1| putative ATP-dependent RNA helicase rhlE [Salmonella bongori NCTC
12419]
Length = 451
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 122/429 (28%), Positives = 197/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT ++LP++Q L
Sbjct: 8 LHPDILRAIAGQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFSLPLLQHL 63
Query: 95 -----SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
+ R +RAL++ PTR+LA Q+ + + + + + G
Sbjct: 64 ITQQPHAKGRRPVRALILTPTRELAAQIGENIRDYSQYLNIRSLVVFG------------ 111
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 112 -------GVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR K P+
Sbjct: 160 RML--------------------------------DMGFIHDIRRVLA------KLPPKR 181
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R E++ + + K K L ++
Sbjct: 182 QNLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GQGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|161504014|ref|YP_001571126.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:- str. RSK2980]
gi|160865361|gb|ABX21984.1| hypothetical protein SARI_02107 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
Length = 455
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 126/429 (29%), Positives = 198/429 (46%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LNPDILRAIAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 -----SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
+ R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITHQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR K P+
Sbjct: 160 RML--------------------------------DMGFIHDIRRVLA------KLPPKR 181
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R E++ + + K K L L+
Sbjct: 182 QNLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSLLI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G ++
Sbjct: 241 GQGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDLR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCIDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|420099387|ref|ZP_14610620.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H11 str.
CVM9455]
gi|394423123|gb|EJE96397.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H11 str.
CVM9455]
Length = 376
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 128/435 (29%), Positives = 198/435 (45%), Gaps = 80/435 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 160 RML--------------------------------DMGFIHDIRRV-----LTKLPAKR- 181
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 182 QNLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQKADNDSC 459
+ +KLL+K D C
Sbjct: 358 RDIEKLLKKRDPAHC 372
>gi|377577364|ref|ZP_09806346.1| ATP-dependent RNA helicase RhlE [Escherichia hermannii NBRC 105704]
gi|377541102|dbj|GAB51511.1| ATP-dependent RNA helicase RhlE [Escherichia hermannii NBRC 105704]
Length = 488
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 126/442 (28%), Positives = 205/442 (46%), Gaps = 84/442 (19%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+P + A+ G + P+Q + I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LNPDILRAVTEQGYNEPTPIQ----HQAIPVVLQGRDLMASAQTGTGKTAGFTLPLLQLL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
+++ R +RAL++ PTR+LA QV G V + S I L+
Sbjct: 64 TDKPYQAKGNRPVRALILTPTRELAAQV---------------GENVREYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+L+ATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLIATPGRLLDLEHQNAVK---LDKVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR K PR
Sbjct: 160 RML--------------------------------DMGFIHDIRRVLA------KLPPRR 181
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+P + R E++ Y + K K L ++
Sbjct: 182 QNLLFSATFSDDIKSLAEKLLHNPAEVEVAR-RNTASEQITQYVHFVDKKRKRELLSLMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G ++
Sbjct: 241 GKENWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDLR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G+ +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGQALSLVCVDEHKLL 357
Query: 445 KRFKKLLQKADNDSCPIHSIPS 466
+ ++LL++ P +IP
Sbjct: 358 RDIERLLKR----EVPRMAIPG 375
>gi|198277297|ref|ZP_03209828.1| hypothetical protein BACPLE_03509 [Bacteroides plebeius DSM 17135]
gi|198269795|gb|EDY94065.1| DEAD/DEAH box helicase [Bacteroides plebeius DSM 17135]
Length = 438
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 121/408 (29%), Positives = 187/408 (45%), Gaps = 77/408 (18%)
Query: 39 LKVALQNMGISSLFPVQVA---VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 95
++ L N+ I L +Q A W+E DL + SPTGSGKTL+Y LP+V +L
Sbjct: 3 IQTILSNLKIDQLNAMQEASIDAWKEG-------SDLILLSPTGSGKTLAYLLPLVSSL- 54
Query: 96 NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLE 155
+ V ++A+V++P+R+LALQ++ VF A+A G V G RP +E
Sbjct: 55 KKGVEGVQAVVLVPSRELALQIEQVFKAMA--TGFPVMSCYG------------GRPAME 100
Query: 156 AGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 215
++ + AV ++ TPGR+ DH+N + F + LV+DE D+ L +Q
Sbjct: 101 E------HRTMKGISPAV--IIGTPGRMNDHLNK-QNFEAGTVRTLVIDEFDKCLEFGFQ 151
Query: 216 AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSAT 275
+ V+ G L +RR + + PR M
Sbjct: 152 DEMAEVI----------------------GKLPALRRRFLLSATDAEEIPRFTGM----- 184
Query: 276 LTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKC 335
N+ +LD FL ET + +RL Y++ K K L LL +LG E
Sbjct: 185 -----NRTLKLD-----FLNPEET---VSQRLSVYRVTSPVKDKLETLYKLLCTLGNEST 231
Query: 336 IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 395
+VF + ES R+ L+ +++ + + G Q R + L FR G + +S+D
Sbjct: 232 LVFCNHRESVDRVGKYLH---SMKVYCETFHGGMEQDDRERALYKFRNGSCHIFISTDLA 288
Query: 396 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443
RG+D+ + +VV+Y P +IHR GRTAR G F +LH +E
Sbjct: 289 ARGLDIPDIRHVVHYHLPVAEDGFIHRNGRTARWEAEGNAFLILHDEE 336
>gi|395227497|ref|ZP_10405823.1| ATP-dependent RNA helicase RhlE [Citrobacter sp. A1]
gi|421844472|ref|ZP_16277630.1| ATP-dependent RNA helicase RhlE [Citrobacter freundii ATCC 8090 =
MTCC 1658]
gi|424728799|ref|ZP_18157404.1| atp-dependent rna helicase [Citrobacter sp. L17]
gi|394718825|gb|EJF24446.1| ATP-dependent RNA helicase RhlE [Citrobacter sp. A1]
gi|411774627|gb|EKS58117.1| ATP-dependent RNA helicase RhlE [Citrobacter freundii ATCC 8090 =
MTCC 1658]
gi|422896670|gb|EKU36452.1| atp-dependent rna helicase [Citrobacter sp. L17]
Length = 448
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 125/429 (29%), Positives = 198/429 (46%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LNPEILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 -----SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
++ R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITNQPHGKSRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+L+ATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLIATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 160 RML--------------------------------DMGFIHDIRRV-----LAKLPAKRQ 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R E++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKSLAEKLLHNPLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GQGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|455643914|gb|EMF23035.1| ATP-dependent RNA helicase RhlE [Citrobacter freundii GTC 09479]
Length = 448
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 125/429 (29%), Positives = 198/429 (46%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LNPEILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 -----SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
++ R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITNQPHGKSRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+L+ATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLIATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 160 RML--------------------------------DMGFIHDIRRV-----LAKLPAKRQ 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R E++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKSLAEKLLHNPLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GQGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|237730773|ref|ZP_04561254.1| ATP-dependent RNA helicase RhlE [Citrobacter sp. 30_2]
gi|226906312|gb|EEH92230.1| ATP-dependent RNA helicase RhlE [Citrobacter sp. 30_2]
Length = 448
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 125/429 (29%), Positives = 198/429 (46%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LNPEILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 -----SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
++ R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITNQPHGKSRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+L+ATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLIATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 160 RML--------------------------------DMGFIHDIRRV-----LAKLPTKRQ 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R E++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKSLAEKLLHNPLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GQGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|365105460|ref|ZP_09334707.1| ATP-dependent RNA helicase rhlE [Citrobacter freundii 4_7_47CFAA]
gi|363643475|gb|EHL82793.1| ATP-dependent RNA helicase rhlE [Citrobacter freundii 4_7_47CFAA]
Length = 448
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 125/429 (29%), Positives = 198/429 (46%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LNPEILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 -----SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
++ R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITNQPHGKSRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+L+ATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLIATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 160 RML--------------------------------DMGFIHDIRRV-----LAKLPAKRQ 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R E++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKSLAEKLLHNPLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GQGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|296103277|ref|YP_003613423.1| putative ATP-dependent RNA helicase RhlE [Enterobacter cloacae
subsp. cloacae ATCC 13047]
gi|295057736|gb|ADF62474.1| putative ATP-dependent RNA helicase RhlE [Enterobacter cloacae
subsp. cloacae ATCC 13047]
Length = 450
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 125/429 (29%), Positives = 199/429 (46%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP+++ L
Sbjct: 8 LNPEILRAIAEQGYVEPTPIQ----QQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLELL 63
Query: 95 SN-----RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
+ R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 VKNQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSRYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+++ LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDNVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR K PR
Sbjct: 160 RML--------------------------------DMGFIHDIRRVLA------KLPPRR 181
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R E++ + + K K L ++
Sbjct: 182 QNLLFSATFSDDIKALAEKLLHNPLEVEVAR-RNTASEQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GQGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ ++LL+K
Sbjct: 358 RDIERLLKK 366
>gi|323454376|gb|EGB10246.1| hypothetical protein AURANDRAFT_23571, partial [Aureococcus
anophagefferens]
Length = 545
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 124/427 (29%), Positives = 188/427 (44%), Gaps = 76/427 (17%)
Query: 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC--------LR 103
F A+ + + L RD+C ++ TGSGKT ++ LP+++ R VR +R
Sbjct: 71 FSRPTAIQERVVPLALAGRDVCASAATGSGKTAAFGLPLLE----RVVRAKAAHGKPTIR 126
Query: 104 ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPE 163
+++LPTR+LA Q +++ + G V L VG + ++ EL R K P
Sbjct: 127 GVILLPTRELAAQCEEMVRGLGQFSGADVALVVGGAKDV-KVQELALRRK--------P- 176
Query: 164 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 223
D++VATPGRL+DH+ RG L+ + V+DE DRLL ++ L +L
Sbjct: 177 ----------DVVVATPGRLLDHLTNGRGVHLDDVECCVLDEADRLLELGFEDELRQLL- 225
Query: 224 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 283
LP G ERG + M+ SAT L
Sbjct: 226 --------------GALPG-----------GSERGKGGRGSGTRQTMLFSATFGAKVESL 260
Query: 284 AQLDLHHPLFL------TTGETRYKLPE---RLESYKLICESKLKPLYLVALLQSLGE-- 332
A L L P+ + G KL + RL++ + E + L+ALL +
Sbjct: 261 AALSLVRPVRVRVASGHGAGGVAAKLTQDFVRLKAAEGRAEDAEREATLLALLTRTVDPA 320
Query: 333 EKCIVFTSSVESTHRLCTLLNHF-------GELRIKIKEYSGLQRQSVRSKTLKAFREGK 385
+ +VF + +T R+ LL G E G RQ+ R L F G
Sbjct: 321 SQAVVFFDTKAATRRVGALLEALRARGGLSGHALPPATELHGGLRQAQRDANLARFERGD 380
Query: 386 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 445
+L+ +D RG+D+ GV VVN++ P + TY+HR GRTARAG+ G TL+ +
Sbjct: 381 AGILLCTDVAARGLDLAGVGAVVNFEMPRTVATYVHRVGRTARAGRSGHAVTLVGPQRRQ 440
Query: 446 RFKKLLQ 452
K+ L+
Sbjct: 441 ALKEFLR 447
>gi|182413406|ref|YP_001818472.1| DEAD/DEAH box helicase [Opitutus terrae PB90-1]
gi|177840620|gb|ACB74872.1| DEAD/DEAH box helicase domain protein [Opitutus terrae PB90-1]
Length = 403
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 125/414 (30%), Positives = 189/414 (45%), Gaps = 76/414 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L L A+Q M P+Q + G D+ ++ TG+GKT ++ALPI+Q L
Sbjct: 10 LQDALAYAVQKMDYVEPTPIQAQAIPIVLKGG----DVIGSAQTGTGKTAAFALPIIQRL 65
Query: 95 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
S LR L++ PTR+LALQV++ F A L V + G
Sbjct: 66 STHG--RLRCLILEPTRELALQVEEAFHKFAKFTDLRVTIVYG----------------- 106
Query: 155 EAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY 214
G+ Y + +L+ +DIL ATPGRL+DH+ +LE + LV+DE DR+L
Sbjct: 107 --GVGYGKQ--TSDLKRGMDILAATPGRLLDHLGQG-NCSLEDVEILVLDEVDRMLD--- 158
Query: 215 QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274
+LP V K ++RC P R + SA
Sbjct: 159 MGFLPDVR-------------------------KIVQRC---------PKARQT-LFFSA 183
Query: 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLES---YKLICESKLKPLYLVALLQSLG 331
TL + +LA LH+P + G R + P S Y ++ K L L LL+
Sbjct: 184 TLPPELEQLAGWALHNPTKVEIG--RVRSPAETVSHGFYPVVASQKFDLLQL--LLERTE 239
Query: 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVS 391
+ ++F + R+ L G + + QR+ R + L F+ GK +VLV+
Sbjct: 240 FKSVLIFCRTRMGADRIAHRLKTKGHT-VGVMHSDRSQRE--RIEALDGFKSGKFEVLVA 296
Query: 392 SDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 445
+D RG+D+ GV++V+NYD P + Y+HR GRT RA G FTL+ +++V+
Sbjct: 297 TDIAARGLDIAGVSHVINYDVPENPEDYVHRIGRTGRAHHTGDAFTLVTEEDVR 350
>gi|127511701|ref|YP_001092898.1| ATP-dependent RNA helicase SrmB [Shewanella loihica PV-4]
gi|126636996|gb|ABO22639.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
Length = 419
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 121/451 (26%), Positives = 205/451 (45%), Gaps = 79/451 (17%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LD L +L+ MG L P + Q+TI L +D+ +PTG+GKT S+ LP +Q L
Sbjct: 21 LDDTLLESLKAMG--HLAPT--TIQQQTIPLALEHKDILARAPTGTGKTASFLLPALQHL 76
Query: 95 SN---RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
+ R R L++ PTR+LA QV + +A +GL + + G
Sbjct: 77 LDFPRRYSGQARVLILAPTRELASQVHRYASHLATGLGLDIAIITG-------------- 122
Query: 152 PKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 211
G+ Y P++ Q L+ +DILVATPGRLM++++ F + + LV+DE DR+L
Sbjct: 123 -----GVPYAPQE--QALKENIDILVATPGRLMEYLDKEL-FDAQSVEILVLDEADRMLD 174
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
+ + + ++ + N A T+ GV R +M+
Sbjct: 175 MGFSSAVQSIAIEAQQRKHNMLFSA------------TLEGGGVSR---------FAEML 213
Query: 272 LS--ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329
L+ T+ P + + +H + L ++ + L+C+ +L+
Sbjct: 214 LTNPVTIETKPPRSEKAKIHQWMHLAD--------DKEHKFALLCD----------ILKR 255
Query: 330 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 389
+ IVF + E L L G I G Q R + L F +G++ VL
Sbjct: 256 EEVSRAIVFVKTREVVASLEGQLQQAG---IHCAFMRGDMEQKARFQALGRFTKGEVNVL 312
Query: 390 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKK 449
+++D RG+D++G+ +V+N+D P TY+HR GRT RAG G +L+ +++ K
Sbjct: 313 LATDVAARGIDIDGITHVINFDMPRSADTYVHRIGRTGRAGNKGTAISLVEAHDMRVVAK 372
Query: 450 LLQKADNDSCPIHSIPSSLIESLRPVYKSVR 480
+ + + + +I+SLRP +K +
Sbjct: 373 IERYIEQ------PLKRRVIDSLRPKHKEAK 397
>gi|336373626|gb|EGO01964.1| hypothetical protein SERLA73DRAFT_49383 [Serpula lacrymans var.
lacrymans S7.3]
Length = 474
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 128/434 (29%), Positives = 191/434 (44%), Gaps = 55/434 (12%)
Query: 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSP 77
P +L + D L P L AL M I + +QVA I P L RD N+
Sbjct: 32 PNTPTLHQSFSFDDLNISSPLL-AALSRMSIRTPTEIQVAC----IPPLLSGRDCIGNAK 86
Query: 78 TGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVG 137
TGSGKT+++ALPI+Q LS ALV+ PTR+LA Q+ D FA + + + + VG
Sbjct: 87 TGSGKTIAFALPILQKLSEDPYGIF-ALVLTPTRELAFQISDQFAVLGAGLSIRTAVIVG 145
Query: 138 QSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLE 196
+ + EL RP ++VATPGR++DH+ ++ G ++L
Sbjct: 146 GMDMMTQALELDNRPH---------------------VVVATPGRIVDHLRSSSGEWSLS 184
Query: 197 HLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVE 256
+ +LV+DE DRLL + L + + + + A T PS + R G
Sbjct: 185 RIKFLVLDEADRLLTPTFSPELSYLFDVLPKERQTCLFTA-TLTPSIDKLAEVPPRPG-- 241
Query: 257 RGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICES 316
K KP+ + + +T + N L R Y L+C
Sbjct: 242 ---KQKPFIHRMNANIETVVTLNQN----------FVLVPSHVRETY-----LYHLLCN- 282
Query: 317 KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSK 376
P +L Q + I+F + + L +LL L I+ Q R
Sbjct: 283 --PPELAASLRQLVQPPPTIIFCTKPRTAAYLTSLLK---TLSIRSTALHSRLTQRERLT 337
Query: 377 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCF 436
+L FR I VLVS+D RG+D+E V V+N+D P + Y HR GRTARAG+ G
Sbjct: 338 SLSLFRSSVIPVLVSTDVGARGLDIEDVAMVINWDLPNEPEEYTHRVGRTARAGKAGIAI 397
Query: 437 TLLHKDEVKRFKKL 450
+ + + + +R K+
Sbjct: 398 SFVTEKDEERVLKI 411
>gi|416896375|ref|ZP_11926222.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli STEC_7v]
gi|417118486|ref|ZP_11969004.1| ATP-dependent RNA helicase RhlE [Escherichia coli 1.2741]
gi|422800154|ref|ZP_16848652.1| DEAD/DEAH box helicase [Escherichia coli M863]
gi|323967399|gb|EGB62820.1| DEAD/DEAH box helicase [Escherichia coli M863]
gi|327253583|gb|EGE65212.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli STEC_7v]
gi|386138020|gb|EIG79180.1| ATP-dependent RNA helicase RhlE [Escherichia coli 1.2741]
Length = 454
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 127/429 (29%), Positives = 196/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 160 RML--------------------------------DMGFIHDIRRV-----LTKLPAKRQ 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R E++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKNLAEKLLHNPLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|384487839|gb|EIE80019.1| hypothetical protein RO3G_04724 [Rhizopus delemar RA 99-880]
Length = 425
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 123/462 (26%), Positives = 203/462 (43%), Gaps = 81/462 (17%)
Query: 22 SLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSG 81
S FED ++ C L++M I +Q A Q P + +D+ + TGSG
Sbjct: 30 SRFEDVGVEEWMC------ETLKSMAIKEPTEIQRACIQ----PIMDGKDVIGGAKTGSG 79
Query: 82 KTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSI 141
KT ++A+PI+Q LS ALV+ PTR+LA Q+ + F + +G+ + VG +
Sbjct: 80 KTAAFAIPILQKLSQDPYGVF-ALVLTPTRELAYQIAEQFRVLGKGIGVKECVVVGGMDM 138
Query: 142 ADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCY 200
+ EL KRP I++ATPGRL DHI ++ G L +
Sbjct: 139 MTQALELAKRPH---------------------IIIATPGRLRDHIQSSSGAVNLSRCKF 177
Query: 201 LVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK 260
LV+DE DR+L + L T+L L + + T L +A + + E
Sbjct: 178 LVMDEADRMLSSTFVPELETILPLLPKNRQ-------TLLFTATMTESILALKDAEEDPA 230
Query: 261 DKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP 320
+P+ + M +S T L+ + + S++K
Sbjct: 231 KRPFVHVCDMSISTVNT-----------------------------LDQFYVFVPSQVKV 261
Query: 321 LYLVALLQS--LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTL 378
+YL LL++ L E I+F + + +L G I+ Q R +L
Sbjct: 262 VYLAHLLRTDDLKERSVIIFCGRCSTAELITVMLKELG---IRCTALHSEMSQQQRLDSL 318
Query: 379 KAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 438
FR +++L+S+D +RG+D+ V V+N+D P YIHR GRTARAG+ G+ ++
Sbjct: 319 GKFRAEVVKILISTDVGSRGLDIPSVECVLNFDIPRDPTDYIHRVGRTARAGRGGKAISI 378
Query: 439 LHKDEVK-------RFKKLLQKADNDSCPIHSIPSSLIESLR 473
+ + +++ R K ++K + D + I S + + R
Sbjct: 379 VAEKDIQLIQNIEERTNKQMEKYEVDENEVLDILSDVTAAKR 420
>gi|420369243|ref|ZP_14869968.1| ATP-dependent RNA helicase rhlE [Shigella flexneri 1235-66]
gi|391321569|gb|EIQ78292.1| ATP-dependent RNA helicase rhlE [Shigella flexneri 1235-66]
Length = 447
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 125/429 (29%), Positives = 198/429 (46%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LNPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 -----SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
++ R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITHQPHGKSRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+L+ATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLIATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 160 RML--------------------------------DMGFIHDIRRV-----LAKLPAKRQ 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R E++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKSLAEKLLHNPLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GQGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|379718419|ref|YP_005310550.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus 3016]
gi|378567091|gb|AFC27401.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
mucilaginosus 3016]
Length = 578
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 117/401 (29%), Positives = 188/401 (46%), Gaps = 71/401 (17%)
Query: 39 LKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-NR 97
L AL G + P+Q +E I L D+ + TG+GKTL++ LPI++++ NR
Sbjct: 15 LAEALHKHGYNEPTPIQ----REAIPSVLGGHDVIAQAQTGTGKTLAFVLPILESIDPNR 70
Query: 98 AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAG 157
+ ++AL+V PTR+LA+Q+ + A AP G+ V A G
Sbjct: 71 S--HVQALIVTPTRELAIQITEEVARWAPLKGIRVLSAYG-------------------- 108
Query: 158 ICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAW 217
D E +++L+ A+ I+VATPGRL+DH+ L L LV+DE D++L + +
Sbjct: 109 -GQDVERQIRKLEGAIHIIVATPGRLLDHLR-RETVQLFKLSTLVLDEADQML---HMGF 163
Query: 218 LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLT 277
LP V+++ + R + ++ SAT+
Sbjct: 164 LPEVVEIISATPTRRQT-----------------------------------LLFSATMP 188
Query: 278 QDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIV 337
+ +LA+ + P+ + R L E +E + + K L AL +++ E+ +
Sbjct: 189 ERVRQLAKEYMKPPVEIEVKAKRVTLDE-IEQIVVQTTDRGK---LDALCKAMEEDPPFL 244
Query: 338 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTR 397
+ R L + E + E G Q+ R + +K FR+ KIQ LV++D R
Sbjct: 245 GMIFCRTKLRATKLRDELDERGYAVDELHGDLTQAKREQVMKRFRDAKIQFLVATDIAAR 304
Query: 398 GMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 438
G+DVEG+ +V NYD P ++YIHR GRT RAG G+ T
Sbjct: 305 GLDVEGITHVYNYDIPHDAESYIHRIGRTGRAGMTGKAITF 345
>gi|321460070|gb|EFX71116.1| hypothetical protein DAPPUDRAFT_309224 [Daphnia pulex]
Length = 757
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 118/424 (27%), Positives = 192/424 (45%), Gaps = 71/424 (16%)
Query: 67 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC--LRALVVLPTRDLALQVKDVFAAI 124
L ++D + S TGSGKTL+YA+PIV++++ + R + ALV++PTR+L LQ F I
Sbjct: 222 LDKKDALVKSQTGSGKTLAYAIPIVESITPKIDRTSGVFALVIVPTRELVLQTYTWFTKI 281
Query: 125 APAVGLSV-GLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL 183
A V G +G E + + K ++IL++TPGRL
Sbjct: 282 LKAFTWVVPGYLIGGEKKKSEKARIRK---------------------GMNILISTPGRL 320
Query: 184 MDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSA 243
+DH+++TR L L +LV+DE DRLL Y+ + +L + +
Sbjct: 321 LDHLSSTRNLNLGRLHWLVMDEADRLLDMGYEKDVARILSIVQ----------------- 363
Query: 244 FGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYK- 302
E K+ R +++SATL++ KLA L L P ++ E +
Sbjct: 364 ------------EHFVKEGCIGRRQNVMVSATLSKGVEKLAGLTLTDPEYIKLSEDDSEN 411
Query: 303 -----LPERLESYKLICESKLKPLYLVALL----QSLGEEKCIVFTSSVESTHRLCTLLN 353
P L+ + +I KL+ L A + E+K ++F ++ +S L N
Sbjct: 412 QDQLVTPTNLKQWYIIVPPKLRLATLAAFILWKCTISTEKKVLIFMTTQDSVDYHAELFN 471
Query: 354 HF---GELRIKIKEYS--GLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVV 408
E R I Y G Q R+ K FR+ VL+ +D RG+D+ ++ +V
Sbjct: 472 RVLAKREDRTSISFYKLHGSMPQKDRTAIFKEFRDTDSGVLLCTDVAARGLDLSAIDWIV 531
Query: 409 NYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSL 468
Y+ P + Y+HR GRTAR G+ G+ L E +L A+ + P ++
Sbjct: 532 QYNPPVTAEEYVHRVGRTARVGKCGQAIIFLAPPETDFVHRL---ANRGISVVEKNPDAI 588
Query: 469 IESL 472
+++L
Sbjct: 589 LKTL 592
>gi|423139268|ref|ZP_17126906.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
houtenae str. ATCC BAA-1581]
gi|379051822|gb|EHY69713.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
houtenae str. ATCC BAA-1581]
Length = 453
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 125/429 (29%), Positives = 198/429 (46%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LNPDILRAIAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 -----SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
+ R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITQQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR + K +
Sbjct: 160 RML--------------------------------DMGFIHDIRRVLAKLPAKRQ----- 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R E++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GQGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|320581178|gb|EFW95399.1| ATP-dependent RNA helicase DBP7 (DEAD-box protein 7) [Ogataea
parapolymorpha DL-1]
Length = 649
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 134/467 (28%), Positives = 209/467 (44%), Gaps = 88/467 (18%)
Query: 11 VLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLF-- 68
VL +P+D S F L+ R+ L I + P ++ Q+ + P L
Sbjct: 111 VLSPSNAPLDTSSFSGL------GLNDRINAHLLGQRIEN--PTKI---QQQVIPRLLAG 159
Query: 69 ERDLCINSPTGSGKTLSYALPIVQTLSN----RAVRCLRALVVLPTRDLALQVKDVFAAI 124
DL + + TGSGKTL++ALPI Q L L AL++ PTR+LA Q+ VF ++
Sbjct: 160 NNDLFVQAQTGSGKTLAFALPIFQKLMEIPNIDRTSGLFALILAPTRELATQIYSVFESL 219
Query: 125 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQE---LQSAVDILVATPG 181
+ K+ AG E E L+ V+ILVATPG
Sbjct: 220 SRC-----------------------HHKIVAGNVIGGEKKKSEKARLRKGVNILVATPG 256
Query: 182 RLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLP 241
RL+DHI T+ L + Y+V+DE DRL+ ++ + +L S +ST +P
Sbjct: 257 RLVDHIEHTQKLDLSKIRYVVLDEGDRLMELGFEESITKILH----------SISSTAVP 306
Query: 242 SAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRY 301
+ SL R + ++ SAT+ KL +L L +TT E
Sbjct: 307 LQYPSLPAKR----------------ISILCSATIKSTVKKLGELSLEKAELVTTSEQIT 350
Query: 302 KLPERLESYKLICESKLKPLYLVALLQSLGEE----KCIVFTSSVESTHRLCTLLNH--- 354
K+P++L ++ KL+ + L L++L ++ + IVF S S L
Sbjct: 351 KVPDQLVQQVVVIPPKLRFVTLAGTLKNLIKDQTASRTIVFFSCSGSVDFHFIALTRKAA 410
Query: 355 --------FGELRIKIKEYSGLQRQSVRSKTLKAFREG-KIQVLVSSDAMTRGMDVEGVN 405
FG K+ G Q R+ TLK F + +L+ +D +RG+D+ +N
Sbjct: 411 SEDTSGTLFGSSIFKL---HGSLSQQTRTSTLKQFADSPNNAILLCTDVASRGLDLPHIN 467
Query: 406 NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 452
NVV +D P + ++HR GRTARAG LG+ L + + + K+++
Sbjct: 468 NVVEFDPPFALDDHLHRVGRTARAGSLGKSVLFLLPGDEENYLKIIE 514
>gi|315503770|ref|YP_004082657.1| dead/deah box helicase domain-containing protein [Micromonospora
sp. L5]
gi|315410389|gb|ADU08506.1| DEAD/DEAH box helicase domain protein [Micromonospora sp. L5]
Length = 417
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 129/426 (30%), Positives = 194/426 (45%), Gaps = 80/426 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P L L GIS+ FP+Q A TI L RD+ TGSGKTL++ LP++
Sbjct: 13 LAPALVSELAAQGISAPFPIQAA----TIPDSLAGRDVLGRGRTGSGKTLAFGLPLLHRT 68
Query: 95 SNRAVRCLR--ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
+ R R R ALV++PTR+LA QV + A A +GL VG S+ + + L
Sbjct: 69 AGRRARPGRPLALVLVPTRELAAQVTEALAPYAATLGLRCATVVGGLSLTRQAAAL---- 124
Query: 153 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLR 211
++ ++LVATPGRL D I+ RG L+ + V+DE D++
Sbjct: 125 -----------------RAGAEVLVATPGRLHDLID--RGDARLDQVAITVLDEADQM-- 163
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
A +LP V +L A G + + ++RG RLV+
Sbjct: 164 -ADMGFLPQVTKLLEQ--------------VAPGGQRMLFSATLDRGVD-----RLVRRF 203
Query: 272 LSATLTQ--DPNKLAQLDL-HHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ 328
L+ +T DP + HH L L +++ KP L +
Sbjct: 204 LTDPVTHSVDPGTATVTAMTHHVLHL--------------------DAEDKPAALAHIAA 243
Query: 329 SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 388
E + IVF ++ R+ L G ++ G + Q R++ L+ FR G++
Sbjct: 244 R--EGRTIVFIATKHRADRVARQLLAKG---VRAAALHGGKSQPQRTRILEQFRTGQVTA 298
Query: 389 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFK 448
LV++D RG+ V+G++ VVN D P K Y+HR GRTARAG+ G TL+ D+ +
Sbjct: 299 LVATDVAARGIHVDGLDLVVNADPPTEAKDYLHRGGRTARAGESGTVVTLVLPDQRRDVA 358
Query: 449 KLLQKA 454
+L+ A
Sbjct: 359 RLMTTA 364
>gi|406603762|emb|CCH44787.1| ATP-dependent RNA helicase [Wickerhamomyces ciferrii]
Length = 435
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 117/390 (30%), Positives = 184/390 (47%), Gaps = 68/390 (17%)
Query: 73 CIN-SPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLS 131
CI + TGSGKT+++ P++ S + LV+ PTR+LALQ+ + FAA+ A+ +
Sbjct: 35 CIGGAKTGSGKTIAFGAPMLTKWSEDPMGIF-GLVLTPTRELALQIAEQFAALGAAMNIR 93
Query: 132 VGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR 191
+ + VG S+ ++ +L +P ++ATPGRL DHI +
Sbjct: 94 IAVIVGGESMVEQAIKLQGKPHF---------------------VIATPGRLADHILNSG 132
Query: 192 GFTLEHLC---YLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS-- 246
T+E L YLV+DE DRLL ++ SD + FS LPSA
Sbjct: 133 EDTIEGLKRVRYLVLDEADRLLSNSFG-----------SDLQRCFS----ILPSADKRQT 177
Query: 247 -LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPE 305
L T R KD+P P T P +L +H + +P
Sbjct: 178 LLFTATVTDAVRALKDRPTP-----------TNKP----KLFIHE----VDSVDKVAIPS 218
Query: 306 RLESYKLICESKLKPLYLVALLQSLGEEK--CIVFTSSVESTHRLCTLLNHFGELRIKIK 363
+LE+Y ++ S +K YL ++L EK +VF V TH + L I++
Sbjct: 219 QLETYFMLVPSYVKESYLYSILSHEDNEKKTAMVF---VNRTHTAEVVRRTLRNLEIRVA 275
Query: 364 EYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRA 423
Q R+ +L FR +VL+++D +RG+D+ V V+NYD PA ++HR
Sbjct: 276 SLHSELPQQERTNSLHRFRANAARVLIATDVASRGLDIPDVELVINYDIPADPDDFVHRV 335
Query: 424 GRTARAGQLGRCFTLLHKDEVKRFKKLLQK 453
GRTARAG+ G+ +L+ + +V R + + ++
Sbjct: 336 GRTARAGRKGQTISLVSEKDVSRIQAIEER 365
>gi|417690323|ref|ZP_12339547.1| putative ATP-dependent RNA helicase rhlE [Shigella boydii 5216-82]
gi|332088993|gb|EGI94105.1| putative ATP-dependent RNA helicase rhlE [Shigella boydii 5216-82]
Length = 441
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 126/429 (29%), Positives = 198/429 (46%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR + K +
Sbjct: 160 RML--------------------------------DMGFIHDIRRVLTKLPAKRQ----- 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SATL+ D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATLSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|86137575|ref|ZP_01056152.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. MED193]
gi|85825910|gb|EAQ46108.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. MED193]
Length = 527
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 133/430 (30%), Positives = 198/430 (46%), Gaps = 70/430 (16%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+ ++ A+ G S P+Q I P L RD+ + TG+GKT S+ LP++ L
Sbjct: 9 LNAKVLKAIAEAGYESPTPIQAGA----IPPALEGRDVLGIAQTGTGKTASFTLPMITLL 64
Query: 95 S-NRA-VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
+ RA R R+LV+ PTR+LA QV + F + L+ L +G
Sbjct: 65 ARGRARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIG--------------- 109
Query: 153 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLR 211
G+ + +D L + VD+L+ATPGRL+DH RG L + +VVDE DR+L
Sbjct: 110 ----GVSFKEQDQL--IDKGVDVLIATPGRLLDHFE--RGKLLLTGVQIMVVDEADRMLD 161
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
+ + + LT + F A T P I R + F P V
Sbjct: 162 MGFIPDIERIFSLTPFTRQTLFFSA-TMAPE-------IER--ITNTFLSAPERIEVARQ 211
Query: 272 LSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLG 331
SA+ T ++ H LF + + R E+ K L AL+ + G
Sbjct: 212 ASASET--------IEQHVVLFKASRKDR--------------EASEKRTALRALINAEG 249
Query: 332 EE--KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 389
E+ I+F + + L +G G QS R+KTL FREGK+++L
Sbjct: 250 EKLTNGIIFCNRKSDVDIVAKSLKKYG---FDAAPIHGDLDQSQRTKTLDGFREGKLRIL 306
Query: 390 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH-KDE--VKR 446
V+SD RG+DV V++V N+D P + + Y+HR GRT RAG+ G+ T+ +DE +
Sbjct: 307 VASDVAARGLDVPSVSHVFNFDVPGHPEDYVHRIGRTGRAGREGKAITICSGRDEKALAA 366
Query: 447 FKKLLQKADN 456
+ LLQK N
Sbjct: 367 VESLLQKEIN 376
>gi|159489242|ref|XP_001702606.1| predicted protein [Chlamydomonas reinhardtii]
gi|158280628|gb|EDP06385.1| predicted protein [Chlamydomonas reinhardtii]
Length = 602
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 138/434 (31%), Positives = 205/434 (47%), Gaps = 67/434 (15%)
Query: 24 FEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKT 83
F L P LK A++ +G S P+Q A I L RD+C ++ TGSGKT
Sbjct: 146 FSSASFADLNISRPLLK-AVEALGYKSPTPIQAAC----IPLALAGRDICGSAVTGSGKT 200
Query: 84 LSYALPIVQTLSNRAVRCLRA---LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSS 140
++ALP ++ L +R R L A LV+ PTR+LA+Q+ + +A ++V L VG S
Sbjct: 201 AAFALPFLERLLHRP-RGLAATYVLVLTPTRELAVQIHSMIEKLAQFTDINVALIVGGLS 259
Query: 141 IADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCY 200
+ + L + P +++VATPGRL+DH+ ++ LE L
Sbjct: 260 LQVQAITLRQSP---------------------EVVVATPGRLIDHLRNSQSVGLEDLAV 298
Query: 201 LVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK 260
LV+DE DRLL ++ V ++ R+ R T L SA F
Sbjct: 299 LVLDEADRLLEMGFR---EEVAEVVRAAPRKR----QTMLFSAT--------------FN 337
Query: 261 DKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP 320
D+ V+ +++ +L Q A P LT R K P + + +C
Sbjct: 338 DQ-----VRDLVALSLKQPVRLAADAARAAPKLLTQEIVRLKGPAAAATKEAVC------ 386
Query: 321 LYLVALLQSLGEE-KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLK 379
L L A +S G+ + IVF S+ HRL L G E G Q+ R ++L+
Sbjct: 387 LALCA--RSFGDRGRTIVFCSTKTKAHRLKILFGLAG--LPPAAELHGNMSQTARLESLE 442
Query: 380 AFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439
+FR G L+++D RG+D++GV VVNYD P ++TY+HR GRTARAG G TL+
Sbjct: 443 SFRRGDTAFLLATDVAARGLDIQGVEVVVNYDAPPKLETYLHRIGRTARAGAAGVAVTLV 502
Query: 440 HKDEVKRFKKLLQK 453
+ K+L +K
Sbjct: 503 EDGDRGLLKELGKK 516
>gi|365848675|ref|ZP_09389147.1| ATP-dependent RNA helicase RhlE [Yokenella regensburgei ATCC 43003]
gi|364570255|gb|EHM47873.1| ATP-dependent RNA helicase RhlE [Yokenella regensburgei ATCC 43003]
Length = 450
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 126/429 (29%), Positives = 198/429 (46%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LNPEILRAVAEQGYREPTPIQ----QQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
+R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ISREPHAKGRRPIRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNA---LKLDSIEVLVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR + K +
Sbjct: 160 RML--------------------------------DMGFIHDIRRVLAKLPAKRQ----- 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R E++ + + K K L L+
Sbjct: 183 -NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSHLI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKDDWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ ++LL+K
Sbjct: 358 RDIERLLKK 366
>gi|302869748|ref|YP_003838385.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora
aurantiaca ATCC 27029]
gi|302572607|gb|ADL48809.1| DEAD/DEAH box helicase domain protein [Micromonospora aurantiaca
ATCC 27029]
Length = 417
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 129/426 (30%), Positives = 194/426 (45%), Gaps = 80/426 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P L L GIS+ FP+Q A TI L RD+ TGSGKTL++ LP++
Sbjct: 13 LAPALVSELAAQGISAPFPIQAA----TIPDSLAGRDVLGRGRTGSGKTLAFGLPLLHRT 68
Query: 95 SNRAVRCLR--ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
+ R R R ALV++PTR+LA QV + A A +GL VG S+ + + L
Sbjct: 69 AGRRARPGRPLALVLVPTRELAAQVTEALAPYAATLGLRCATVVGGLSLTRQAAAL---- 124
Query: 153 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLR 211
++ ++LVATPGRL D I+ RG L+ + V+DE D++
Sbjct: 125 -----------------RAGAEVLVATPGRLHDLID--RGDARLDQVTITVLDEADQM-- 163
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
A +LP V +L A G + + ++RG RLV+
Sbjct: 164 -ADMGFLPQVTKLLEQ--------------VAPGGQRMLFSATLDRGVD-----RLVRRF 203
Query: 272 LSATLTQ--DPNKLAQLDL-HHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ 328
L+ +T DP + HH L L +++ KP L +
Sbjct: 204 LTDPVTHSVDPGTATVTAMTHHVLHL--------------------DAEDKPAALAHIAA 243
Query: 329 SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 388
E + IVF ++ R+ L G ++ G + Q R++ L+ FR G++
Sbjct: 244 R--EGRTIVFIATKHRADRVARQLLAKG---VRAAALHGGKSQPQRTRILEQFRTGQVTA 298
Query: 389 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFK 448
LV++D RG+ V+G++ VVN D P K Y+HR GRTARAG+ G TL+ D+ +
Sbjct: 299 LVATDVAARGIHVDGLDLVVNADPPTEAKDYLHRGGRTARAGESGTVVTLVLPDQRRDVA 358
Query: 449 KLLQKA 454
+L+ A
Sbjct: 359 RLMTTA 364
>gi|389594423|ref|XP_003722434.1| putative ATP-dependent DEAD-box RNA helicase [Leishmania major
strain Friedlin]
gi|323363662|emb|CBZ12667.1| putative ATP-dependent DEAD-box RNA helicase [Leishmania major
strain Friedlin]
Length = 405
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 119/425 (28%), Positives = 190/425 (44%), Gaps = 73/425 (17%)
Query: 39 LKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA 98
L++ + G PVQ +E I L +D+ + G+GKT S+ +P+++ + R
Sbjct: 41 LQMGIFEKGFEKPSPVQ----EEAIPVALQGKDVLARAKNGTGKTASFVIPVLEKVDTRE 96
Query: 99 VRCLRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAG 157
+ ++AL+++PTR+LALQ V + + GL V + G +++ D+I L
Sbjct: 97 L-YVQALLMVPTRELALQTAQVTKELGKHIPGLEVMVTTGGTTLRDDILRLT-------- 147
Query: 158 ICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAW 217
S V ILVATPGR++D + + + L H LV+DE D+LL + +
Sbjct: 148 -------------SKVHILVATPGRVLD-LASKKAVDLSHCHILVLDEADKLLSQEFMEI 193
Query: 218 LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLT 277
+ D T+LPS S M+ SAT
Sbjct: 194 I---------------DDLYTYLPSQLQS-----------------------MLFSATFP 215
Query: 278 QDPNKLAQLDLHHPLFLT-TGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCI 336
A+ LH+P + E K + Y E + K L L L + I
Sbjct: 216 VTVKTFAERHLHNPYEINLMDELTLK---GVTQYYAFVEERQKIHCLNTLFNKLQINQSI 272
Query: 337 VFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT 396
+F +SV L + G I ++ +Q+Q R++ FREG + LV SD +T
Sbjct: 273 IFCNSVNRVELLAKKITQLGYSCYYI--HARMQQQH-RNRVFHDFREGHCRNLVCSDLIT 329
Query: 397 RGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 456
RG+D++ VN V+N+D P Y +TY+HR GR+ R G LG + D+ ++ Q+ D
Sbjct: 330 RGIDIQAVNVVINFDFPKYAETYLHRIGRSGRFGHLGVAINFVTYDDRYNVYRIEQELDT 389
Query: 457 DSCPI 461
+ PI
Sbjct: 390 EIKPI 394
>gi|302682610|ref|XP_003030986.1| hypothetical protein SCHCODRAFT_77182 [Schizophyllum commune H4-8]
gi|300104678|gb|EFI96083.1| hypothetical protein SCHCODRAFT_77182 [Schizophyllum commune H4-8]
Length = 775
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 126/458 (27%), Positives = 200/458 (43%), Gaps = 82/458 (17%)
Query: 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSP 77
P D+ LF D P+ K L+ ++ VQ +++ L +D+ +
Sbjct: 48 PDDLKLFSDLPISQA------TKRGLKKAAFINMTDVQA----KSLPVSLKGKDVLGAAR 97
Query: 78 TGSGKTLSYALPIVQTLSNRA---VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGL 134
TGSGKTL++ +P+++ L R L AL++ PTR+LA+Q+ +V +I P S GL
Sbjct: 98 TGSGKTLAFLIPVLEILYRRKWGPADGLGALIISPTRELAVQIFEVLRSIGPFHSFSAGL 157
Query: 135 AVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194
+G ++ DE L++ ++ILVATPGRL+ H++ T GF
Sbjct: 158 VIGGKNLKDERDRLVR----------------------MNILVATPGRLLQHMDQTYGFE 195
Query: 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCG 254
++L LV+DE DR+L + L +L G L R+
Sbjct: 196 CDNLQVLVLDEADRILDMGFAKTLSALL----------------------GHLPKSRQT- 232
Query: 255 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYK----LPERLESY 310
++ SAT T + LA+L L P F+ T E P+ LE +
Sbjct: 233 ---------------LLFSATQTDSVSDLARLSLTDPAFIATKEAEESHTATTPKNLEQH 277
Query: 311 KLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELR--IKIKEYSGL 368
IC K L + +++ + K +VF SS + ++ + F +++ + + G
Sbjct: 278 YAICTLDQKLDLLWSFIKTHLQSKTLVFLSSCK---QVRFVYETFCKMQPGVSLLHLHGK 334
Query: 369 QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 428
Q+Q R F + VL ++D RG+D V+ V+ D P ++TYIHR GRTAR
Sbjct: 335 QKQMTRLAMYDRFTKMSHVVLFATDIAARGLDFPAVDWVLQLDAPEDVETYIHRVGRTAR 394
Query: 429 AGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPS 466
G+ L E + K D D I PS
Sbjct: 395 YESKGKGLLFLMPSEEEGMLAAFAKRDIDIKKIKIRPS 432
>gi|170754257|ref|YP_001782408.1| DEAD/DEAH box helicase [Clostridium botulinum B1 str. Okra]
gi|429244877|ref|ZP_19208296.1| DEAD/DEAH box helicase [Clostridium botulinum CFSAN001628]
gi|169119469|gb|ACA43305.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum B1 str. Okra]
gi|428758067|gb|EKX80520.1| DEAD/DEAH box helicase [Clostridium botulinum CFSAN001628]
Length = 524
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 118/434 (27%), Positives = 202/434 (46%), Gaps = 81/434 (18%)
Query: 24 FEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKT 83
E+ ++L + LK A+Q+MG F A+ +++I L D+ + TG+GKT
Sbjct: 1 MENKNFENLNLNEDVLK-AIQHMG----FETPSAIQEKSIPVVLEGADVIAQAQTGTGKT 55
Query: 84 LSYALPIVQTL-SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIA 142
L++ P++ L N + ++ALV+ PTR+LALQ+KD ++ V G SI
Sbjct: 56 LAFGAPVISALCDNEKKKGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVYGGESIE 115
Query: 143 DEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLV 202
+I ++++S VDI+V TPGR++DHIN R L + +L+
Sbjct: 116 RQI---------------------KDIKSGVDIVVGTPGRILDHIN-RRTLKLGGIDFLI 153
Query: 203 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDK 262
+DE D +L + + T+++ T + + A+ P I++ + KD
Sbjct: 154 LDEADEMLNMGFIEDIETIMESTSEEKQTMLFSATMPAP--------IKKLALNYMKKDV 205
Query: 263 PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKL------PERLESYKLICES 316
+ ++K L+ +K+AQ H+ F + + + E ES + C +
Sbjct: 206 EHIAILKKSLTV------DKIAQ---HY--FAVKNKDKLEAICRIIDSEEPESAIIFCRT 254
Query: 317 KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSK 376
K LV +QS G +VE H G Q+ R
Sbjct: 255 KRGVDELVEAMQSKG--------YNVEGMH--------------------GDMSQNQRIN 286
Query: 377 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCF 436
TLK F++ + LV++D RG+DVE +++V+NYD P ++Y+HR GRT RA + G +
Sbjct: 287 TLKKFKKATLNFLVATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAY 346
Query: 437 TLLHKDEVKRFKKL 450
+L+ EV +++
Sbjct: 347 SLVTPREVSSIRQI 360
>gi|254229671|ref|ZP_04923081.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
gi|262395214|ref|YP_003287068.1| ATP-dependent RNA helicase SrmB [Vibrio sp. Ex25]
gi|151937792|gb|EDN56640.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
gi|262338808|gb|ACY52603.1| ATP-dependent RNA helicase SrmB [Vibrio sp. Ex25]
Length = 407
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 134/425 (31%), Positives = 199/425 (46%), Gaps = 78/425 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LD L A++ MG +Q E I L RD+ ++PTG+GKT ++ LP +Q L
Sbjct: 10 LDQNLLEAIEEMGYKRPTKIQA----EAIPQALDGRDILASAPTGTGKTAAFVLPALQYL 65
Query: 95 SN---RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
+ R R L++ PTR+LA+Q+ D A+A L++ G
Sbjct: 66 QDFPRRKPGPARILILTPTRELAMQIADQARALAKNTKLNIFTITG-------------- 111
Query: 152 PKLEAGICY-DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 210
G+ Y + D+L Q DI+VATPGRL ++I+A R F + +L++DE DR+L
Sbjct: 112 -----GVQYQEHADILATTQ---DIVVATPGRLKEYIDAER-FDCRAIEWLILDEADRML 162
Query: 211 REAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270
+ PTV +L+ NE R+ T L SA T+ GVE GF
Sbjct: 163 DMGFA---PTVDRLS---NECRWR-KQTLLFSA-----TLEGKGVE-GF----------- 198
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL 330
+A L DP A++D PL R K+ + E KL+ L + Q+
Sbjct: 199 --TADLLNDP---AEIDAKSPL-----RERKKIAQWYHRAD-DAEHKLELLKHIITQQA- 246
Query: 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 390
E+ IVF + E RL L +I G Q R+ + FR+G + VL+
Sbjct: 247 --ERTIVFLKTRE---RLAELRAQLESAQIPCSWIQGEMPQDRRNNAISRFRDGTVNVLL 301
Query: 391 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK------DEV 444
++D RG+D+ V++V+NYD P Y+HR GRTARAG+ G +++ D V
Sbjct: 302 ATDVAARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDRV 361
Query: 445 KRFKK 449
R+ K
Sbjct: 362 ARYVK 366
>gi|441516681|ref|ZP_20998428.1| putative ATP-dependent RNA helicase, partial [Gordonia hirsuta DSM
44140 = NBRC 16056]
gi|441456474|dbj|GAC56389.1| putative ATP-dependent RNA helicase, partial [Gordonia hirsuta DSM
44140 = NBRC 16056]
Length = 464
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 128/429 (29%), Positives = 191/429 (44%), Gaps = 59/429 (13%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
+DP + AL+ G S F +Q + T+ L DL + TG GKT + +P++ L
Sbjct: 31 VDPAIVAALEADGKSHTFAIQ----ELTLPLALAGSDLIGQARTGMGKTFGFGVPLLHRL 86
Query: 95 SNRA---VRCL----RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISE 147
+ A +R L RALV++PTR+L +QV A V + + S
Sbjct: 87 VHTADLGLRGLDGTPRALVIVPTRELCIQVYADLTTAAKGVQVETVTTGEDGAETAGASR 146
Query: 148 LIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDET 206
+K + G YD + + ELQS VD++V TPGRL+D A +G L + LV+DE
Sbjct: 147 PLKLTAIYGGRPYDSQ--IAELQSGVDVVVGTPGRLLDL--AQQGHLVLGKVQILVLDEA 202
Query: 207 DRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPR 266
D +L FLP +ER P PR
Sbjct: 203 DEMLDLG-------------------------FLPD------------IERIMGALPTPR 225
Query: 267 LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR-YKLPERLESYKLICESKLKPLYLVA 325
M+ SAT+ LA+ L P + + + ER Y + K +
Sbjct: 226 QT-MLFSATMPGPIVTLARTFLTQPTHIRAEQANDSAVHERTTQYVYRAHALDKAELVAR 284
Query: 326 LLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 385
+LQ+ G ++FT + + ++ + E + G Q R K L FREG
Sbjct: 285 ILQAEGRGATMIFTRTKRTAQKVA---DDLAERGFSVGAVHGDLGQVAREKALGKFREGN 341
Query: 386 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 445
I VLV++D RG+D++ V +V+NY P KTY+HR GRT RAG+ G T + DE+
Sbjct: 342 IDVLVATDVAARGIDIDDVTHVINYQCPEDDKTYVHRIGRTGRAGRTGTAITFVDWDELH 401
Query: 446 RFKKLLQKA 454
R+ +L+ KA
Sbjct: 402 RW-ELIDKA 409
>gi|451975526|ref|ZP_21926713.1| dead/deah box helicase domain protein [Vibrio alginolyticus E0666]
gi|451930509|gb|EMD78216.1| dead/deah box helicase domain protein [Vibrio alginolyticus E0666]
Length = 407
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 134/425 (31%), Positives = 199/425 (46%), Gaps = 78/425 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LD L A++ MG +Q E I L RD+ ++PTG+GKT ++ LP +Q L
Sbjct: 10 LDQNLLEAIEEMGYERPTKIQA----EAIPQALDGRDILASAPTGTGKTAAFVLPALQYL 65
Query: 95 SN---RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
+ R R L++ PTR+LA+Q+ D A+A L++ G
Sbjct: 66 QDFPRRKPGPARILILTPTRELAMQIADQARALAKNTKLNIFTITG-------------- 111
Query: 152 PKLEAGICY-DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 210
G+ Y + D+L Q DI+VATPGRL ++I+A R F + +L++DE DR+L
Sbjct: 112 -----GVQYQEHADILATTQ---DIVVATPGRLKEYIDAER-FDCRAIEWLILDEADRML 162
Query: 211 REAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270
+ PTV +L+ NE R+ T L SA T+ GVE GF
Sbjct: 163 DMGFA---PTVDRLS---NECRWR-KQTLLFSA-----TLEGKGVE-GF----------- 198
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL 330
+A L DP A++D PL R K+ + E KL+ L + Q+
Sbjct: 199 --TADLLNDP---AEIDAKSPL-----RERKKIAQWYHRAD-DAEHKLELLKHIITQQA- 246
Query: 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 390
E+ IVF + E RL L +I G Q R+ + FR+G + VL+
Sbjct: 247 --ERTIVFLKTRE---RLAELRAQLESAQIPCSWIQGEMPQDRRNNAISRFRDGTVNVLL 301
Query: 391 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK------DEV 444
++D RG+D+ V++V+NYD P Y+HR GRTARAG+ G +++ D V
Sbjct: 302 ATDVAARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDRV 361
Query: 445 KRFKK 449
R+ K
Sbjct: 362 ARYVK 366
>gi|269964515|ref|ZP_06178755.1| Superfamily II DNA and RNA helicase [Vibrio alginolyticus 40B]
gi|269830752|gb|EEZ84971.1| Superfamily II DNA and RNA helicase [Vibrio alginolyticus 40B]
Length = 403
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 134/425 (31%), Positives = 198/425 (46%), Gaps = 78/425 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LD L A++ MG +Q E I L RD+ ++PTG+GKT ++ LP +Q L
Sbjct: 10 LDQNLLEAIEEMGYERPTKIQA----EAIPQALDGRDILASAPTGTGKTAAFVLPALQYL 65
Query: 95 SN---RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
+ R R L++ PTR+LA+Q+ D A+A L++ G
Sbjct: 66 QDFPRRKPGPARILILTPTRELAMQIADQARALAKNTKLNIFTITG-------------- 111
Query: 152 PKLEAGICYDPE-DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 210
G+ Y D+L Q DI+VATPGRL ++I+A R F + +L++DE DR+L
Sbjct: 112 -----GVQYQEHADILATTQ---DIVVATPGRLKEYIDAER-FDCRAIEWLILDEADRML 162
Query: 211 REAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270
+ PTV +L+ NE R+ T L SA T+ GVE GF
Sbjct: 163 DMGFA---PTVDRLS---NECRWR-KQTLLFSA-----TLEGKGVE-GF----------- 198
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL 330
+A L DP A++D PL R K+ + E KL+ L + Q+
Sbjct: 199 --TADLLNDP---AEIDAKSPL-----RERKKIAQWYHRAD-DAEHKLELLKHIITQQA- 246
Query: 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 390
E+ IVF + E RL L +I G Q R+ + FR+G + VL+
Sbjct: 247 --ERTIVFLKTRE---RLAELRAQLESAQIPCSWIQGEMPQDRRNNAISRFRDGTVNVLL 301
Query: 391 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK------DEV 444
++D RG+D+ V++V+NYD P Y+HR GRTARAG+ G +++ D V
Sbjct: 302 ATDVAARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDRV 361
Query: 445 KRFKK 449
R+ K
Sbjct: 362 ARYVK 366
>gi|91226790|ref|ZP_01261443.1| ATP-dependent RNA helicase SrmB [Vibrio alginolyticus 12G01]
gi|91188921|gb|EAS75205.1| ATP-dependent RNA helicase SrmB [Vibrio alginolyticus 12G01]
Length = 407
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 134/425 (31%), Positives = 199/425 (46%), Gaps = 78/425 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LD L A++ MG +Q E I L RD+ ++PTG+GKT ++ LP +Q L
Sbjct: 10 LDQNLLEAIEEMGYERPTKIQA----EAIPQALDGRDILASAPTGTGKTAAFVLPALQYL 65
Query: 95 SN---RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
+ R R L++ PTR+LA+Q+ D A+A L++ G
Sbjct: 66 QDFPRRKPGPARILILTPTRELAMQIADQARALAKNTKLNIFTITG-------------- 111
Query: 152 PKLEAGICY-DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 210
G+ Y + D+L Q DI+VATPGRL ++I+A R F + +L++DE DR+L
Sbjct: 112 -----GVQYQEHADILATTQ---DIVVATPGRLKEYIDAER-FDCRAIEWLILDEADRML 162
Query: 211 REAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270
+ PTV +L+ NE R+ T L SA T+ GVE GF
Sbjct: 163 DMGFA---PTVDRLS---NECRWR-KQTLLFSA-----TLEGKGVE-GF----------- 198
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL 330
+A L DP A++D PL R K+ + E KL+ L + Q+
Sbjct: 199 --TADLLNDP---AEIDAKSPL-----RERKKIAQWYHRAD-DAEHKLELLKHIITQQA- 246
Query: 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 390
E+ IVF + E RL L +I G Q R+ + FR+G + VL+
Sbjct: 247 --ERTIVFLKTRE---RLAELRAQLESAQIPCSWIQGEMPQDRRNNAISRFRDGTVNVLL 301
Query: 391 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK------DEV 444
++D RG+D+ V++V+NYD P Y+HR GRTARAG+ G +++ D V
Sbjct: 302 ATDVAARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDRV 361
Query: 445 KRFKK 449
R+ K
Sbjct: 362 ARYVK 366
>gi|365969640|ref|YP_004951201.1| ATP-dependent RNA helicase rhlE [Enterobacter cloacae EcWSU1]
gi|365748553|gb|AEW72780.1| ATP-dependent RNA helicase rhlE [Enterobacter cloacae EcWSU1]
Length = 460
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 124/429 (28%), Positives = 198/429 (46%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP+++ L
Sbjct: 8 LNPEILRAIAEQGYVEPTPIQ----QQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLELL 63
Query: 95 SN-----RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
+ R +RAL++ PTR+LA Q+ G V + S I L+
Sbjct: 64 VKNQPHAKGRRPVRALILTPTRELAAQI---------------GENVREYSRYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNA---LKLDSIEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR K PR
Sbjct: 160 RML--------------------------------DMGFIHDIRRVLA------KLPPRR 181
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + + LA+ LH+PL + R E++ + + K K L ++
Sbjct: 182 QNLLFSATFSDEIKALAEKLLHNPLEVEVAR-RNTASEQITQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GQGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALAEFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ ++LL+K
Sbjct: 358 RDIERLLRK 366
>gi|401429120|ref|XP_003879042.1| putative ATP-dependent DEAD-box RNA helicase [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495292|emb|CBZ30595.1| putative ATP-dependent DEAD-box RNA helicase [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 405
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 119/425 (28%), Positives = 189/425 (44%), Gaps = 73/425 (17%)
Query: 39 LKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA 98
L++ + G PVQ +E I L +D+ + G+GKT S+ +P+++ + R
Sbjct: 41 LQMGIFEKGFEKPSPVQ----EEAIPVALQGKDVLARAKNGTGKTASFVIPVLEKVDTRE 96
Query: 99 VRCLRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAG 157
++AL+++PTR+LALQ V + + GL V + G +++ D+I L
Sbjct: 97 -SYVQALLMVPTRELALQTAQVTKELGKHIPGLEVMVTTGGTTLRDDILRLT-------- 147
Query: 158 ICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAW 217
S V ILVATPGR++D + + + L H LV+DE D+LL + +
Sbjct: 148 -------------SKVHILVATPGRVLD-LASKKAVDLSHCHILVLDEADKLLSQEFMEI 193
Query: 218 LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLT 277
+ D T+LPS S M+ SAT
Sbjct: 194 I---------------DDLYTYLPSQLQS-----------------------MLFSATFP 215
Query: 278 QDPNKLAQLDLHHPLFLT-TGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCI 336
A+ LH+P + E K + Y E + K L L L + I
Sbjct: 216 VTVKTFAERHLHNPYEINLMDELTLK---GVTQYYAFVEERQKIHCLNTLFNKLQINQSI 272
Query: 337 VFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT 396
+F +SV L + G I ++ +Q+Q R++ FREG + LV SD +T
Sbjct: 273 IFCNSVNRVELLAKKITQLGYSCYYI--HARMQQQH-RNRVFHDFREGHCRNLVCSDLIT 329
Query: 397 RGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 456
RG+D++ VN V+N+D P Y +TY+HR GR+ R G LG + D+ ++ Q+ D
Sbjct: 330 RGIDIQAVNVVINFDFPKYAETYLHRIGRSGRFGHLGVAINFVTYDDRYNVYRIEQELDT 389
Query: 457 DSCPI 461
+ PI
Sbjct: 390 EIKPI 394
>gi|153839366|ref|ZP_01992033.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AQ3810]
gi|149747114|gb|EDM58102.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AQ3810]
Length = 407
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 132/444 (29%), Positives = 205/444 (46%), Gaps = 78/444 (17%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LD L A++ MG +Q E I L RD+ ++PTG+GKT ++ LP +Q L
Sbjct: 10 LDQNLLEAIEEMGYERPTKIQA----EAIPQALDGRDILASAPTGTGKTAAFVLPALQYL 65
Query: 95 SN---RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
+ R R L++ PTR+LA+QV D A+A L++ G
Sbjct: 66 QDFPRRKPGPARILILTPTRELAMQVADQARALAKKTKLNIFTITG-------------- 111
Query: 152 PKLEAGICY-DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 210
G+ Y + D+L Q DI+VATPGRL ++I+A R F + +LV+DE DR+L
Sbjct: 112 -----GVQYQEHADILATTQ---DIVVATPGRLREYIDAER-FDCRAIEWLVLDEADRML 162
Query: 211 REAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270
+ PTV +L+ NE R+ T L SA T+ GVE GF
Sbjct: 163 DMGFA---PTVDRLS---NECRWR-KQTLLFSA-----TLEGKGVE-GF----------- 198
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL 330
+A L +P A++D PL + +++ + +S L L+ + +
Sbjct: 199 --TADLLNEP---AEIDAKSPL---------RERKKIAQWYHRADSAEHKLALLKHIITE 244
Query: 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 390
E+ IVF + E RL L +I G Q R+ + FR+G + VL+
Sbjct: 245 QAERTIVFLKTRE---RLAELRAQLESAQIPCSWIQGEMPQDRRNNAIARFRDGTVNVLL 301
Query: 391 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
++D RG+D+ V++V+NYD P Y+HR GRTARAG+ G +++ + ++
Sbjct: 302 ATDVAARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDRV 361
Query: 451 LQKADNDSCPIHSIPSSLIESLRP 474
+ D I I+ +RP
Sbjct: 362 ARYVKED------IKERFIKEMRP 379
>gi|392978221|ref|YP_006476809.1| ATP-dependent RNA helicase RhlE [Enterobacter cloacae subsp.
dissolvens SDM]
gi|392324154|gb|AFM59107.1| ATP-dependent RNA helicase RhlE [Enterobacter cloacae subsp.
dissolvens SDM]
Length = 450
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 124/429 (28%), Positives = 199/429 (46%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP+++ L
Sbjct: 8 LNPEILRAIAEQGYVEPTPIQ----QQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLELL 63
Query: 95 SN-----RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
+ R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 VKNQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSRYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+++ LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDNVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR K PR
Sbjct: 160 RML--------------------------------DMGFIHDIRRVLA------KLPPRR 181
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + + LA+ LH+PL + R E++ + + K K L ++
Sbjct: 182 QNLLFSATFSDEIKALAEKLLHNPLEVEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GQGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ ++LL+K
Sbjct: 358 RDIERLLKK 366
>gi|346972935|gb|EGY16387.1| ATP-dependent RNA helicase dbp6 [Verticillium dahliae VdLs.17]
Length = 775
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 111/351 (31%), Positives = 165/351 (47%), Gaps = 84/351 (23%)
Query: 13 PWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFER-- 70
PW+ +P+ V+ P + D K+ L++ G F VQ A + P R
Sbjct: 197 PWLAAPIRVAADTRTPFPEIGINDRSAKI-LESKGFKDAFAVQTAAIPLLL-PSCKHRQG 254
Query: 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG- 129
DL + + TGSGKTL+YALPIV+ +S V LRALVVLPTR+L Q ++VF A A
Sbjct: 255 DLLVAAATGSGKTLAYALPIVRDISQGQVTRLRALVVLPTRELVNQAQEVFQLCAAAFDA 314
Query: 130 -----LSVGLAVGQSSIADEISELIKRPKLEAGICYDPE--------------------- 163
+ +G+++G + ++ + L+++ + YDPE
Sbjct: 315 RDQKRVRIGISIGSHQLKNDQANLVEQTER-----YDPEAYADAVKRDREAWTTLEDADA 369
Query: 164 ---------------DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208
D + + S VD+L+ TPGRL+DHIN T GFTL+++ +LVVDE D+
Sbjct: 370 EGGPQASRPVMGNLPDHVVDYNSKVDVLICTPGRLVDHINHTPGFTLDYVRWLVVDEADK 429
Query: 209 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLV 268
LL +++Q WL V+ R+ N+FS R F D +
Sbjct: 430 LLAQSFQGWLDVVMPKLRT---NKFS---------------------ARDFPDSNLTGVR 465
Query: 269 KMVLSATLTQDPNKLAQLDLHHPLFL---------TTGETRYKLPERLESY 310
K+VLSATLT+D + L L L P + TT + LP L+ +
Sbjct: 466 KVVLSATLTRDLSLLGSLQLRRPQLIVLEGGKADGTTQVAEHTLPSSLKEF 516
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 55/86 (63%)
Query: 362 IKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIH 421
I + Q+ S R + L +F G +++LV+SD + RG+D+ ++NVVNYD PA Y+H
Sbjct: 633 IGTLTSTQKTSHRRRVLASFTTGTLRILVASDLVARGIDLPALDNVVNYDLPASAAGYVH 692
Query: 422 RAGRTARAGQLGRCFTLLHKDEVKRF 447
R GRTARAG+ GR FTL+ E F
Sbjct: 693 RVGRTARAGRQGRAFTLVETRESGWF 718
>gi|295689524|ref|YP_003593217.1| DEAD/DEAH box helicase [Caulobacter segnis ATCC 21756]
gi|295431427|gb|ADG10599.1| DEAD/DEAH box helicase domain protein [Caulobacter segnis ATCC
21756]
Length = 524
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 129/427 (30%), Positives = 192/427 (44%), Gaps = 81/427 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P A+ + G ++ P+Q + I L +D+ + TG+GKT ++ LP++ L
Sbjct: 9 LSPTTLQAVADTGYTTATPIQA----QAIPVALAGQDVLGIAQTGTGKTAAFTLPLIDKL 64
Query: 95 -SNRA-VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
S RA R RALV+ PTR+LA QV F A LS L +G S D+
Sbjct: 65 QSGRAKARMPRALVIAPTRELADQVASSFEKYAKGTKLSWALLIGGVSFGDQ-------- 116
Query: 153 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLR 211
++L VD+L+ATPGRL+DH RG + + +LVVDE DR+L
Sbjct: 117 -------------EKKLDRGVDVLIATPGRLLDHFE--RGKLLMTGVQFLVVDEADRMLD 161
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
F+P +ER FK P P+ +
Sbjct: 162 MG-------------------------FIPD------------IERIFKMTP-PKKQTLF 183
Query: 272 LSATLTQDPNKLAQLDLHHPLFL------TTGETRYKLPERLESYKLICESKLKPLYLVA 325
SAT+ + +L + L P+ + TT +L ++ S + K K L L A
Sbjct: 184 FSATMPPEITRLTKQFLRDPVRIEVARPATTNANITQLLVKVPS----SDPKAKRLALRA 239
Query: 326 LLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 385
L++ E IVF + + L G I G Q+ R KTL FR G
Sbjct: 240 LIEKAQIETGIVFCNRKTEVDIVAKSLKVHGYDAAPIH---GDLDQTQRMKTLADFRSGA 296
Query: 386 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 445
+++LV+SD RG+D+ V++V NYD P + Y+HR GRT RAG+ G + L+ + K
Sbjct: 297 LKILVASDVAARGLDIPAVSHVFNYDVPHHADDYVHRIGRTGRAGRTGITYMLVTPADDK 356
Query: 446 RFKKLLQ 452
F K+++
Sbjct: 357 GFDKVVK 363
>gi|115400041|ref|XP_001215609.1| ATP-dependent rRNA helicase RRP3 [Aspergillus terreus NIH2624]
gi|114191275|gb|EAU32975.1| ATP-dependent rRNA helicase RRP3 [Aspergillus terreus NIH2624]
Length = 360
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 107/342 (31%), Positives = 157/342 (45%), Gaps = 64/342 (18%)
Query: 104 ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPE 163
+L++ PTR+LA Q+ A+ + + L +G + + L K+P
Sbjct: 14 SLILAPTRELAQQIAHTVEALGARISVRCTLLIGGMDMISQAIALGKKPH---------- 63
Query: 164 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 223
++VATPGRL+DH+ T+GF+L L YLV+DE DRLL + L +L+
Sbjct: 64 -----------VIVATPGRLLDHLENTKGFSLRTLKYLVLDEADRLLDLDFGPILDKLLR 112
Query: 224 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 283
L LP K K Y + SAT++ L
Sbjct: 113 L---------------LP------------------KRKTY------LFSATMSSKVESL 133
Query: 284 AQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVE 343
+ L P+ ++ + L+SY L K K YLV LL + I+FT +V
Sbjct: 134 QRASLSDPVRVSVSTKNQTASKLLQSY-LFIPHKFKDFYLVYLLNERAGQMGIIFTRTVH 192
Query: 344 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG 403
T RL +L + G I I G QS R +L FR +L+++D RG+D+
Sbjct: 193 ETQRLSIMLRNLGFPAIPI---HGQLSQSARLASLNKFRARSRNLLIATDVAARGLDIPA 249
Query: 404 VNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 445
V+ V+NYD P KTYIHR GRTARAG+ G F+ + + EV+
Sbjct: 250 VDYVLNYDLPQDSKTYIHRVGRTARAGKSGIAFSFVTQYEVE 291
>gi|170760570|ref|YP_001788120.1| DEAD/DEAH box helicase [Clostridium botulinum A3 str. Loch Maree]
gi|169407559|gb|ACA55970.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum A3 str. Loch Maree]
Length = 524
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 118/434 (27%), Positives = 206/434 (47%), Gaps = 81/434 (18%)
Query: 24 FEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKT 83
E+ ++L + LK A+Q+MG F A+ +++I L D+ + TG+GKT
Sbjct: 1 MENKNFENLNLNEDVLK-AIQHMG----FETPSAIQEKSIPVVLEGADVIAQAQTGTGKT 55
Query: 84 LSYALPIVQTL-SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIA 142
L++ P++ +L N + ++ALV+ PTR+LALQ+KD ++ V G SI
Sbjct: 56 LAFGAPVISSLCDNEKKKGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVYGGESIE 115
Query: 143 DEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLV 202
+I ++++S VDI+V TPGR++DHIN R L + +L+
Sbjct: 116 RQI---------------------KDIKSGVDIVVGTPGRILDHIN-RRTLKLGGIDFLI 153
Query: 203 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDK 262
+DE D +L + + T+++ T + + A+ +P+A I++ + +D
Sbjct: 154 LDEADEMLNMGFIEDIETIMESTPEEKQTMLFSAT--MPAA------IKKLALNYMKEDV 205
Query: 263 PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKL------PERLESYKLICES 316
+ ++K L+ +K+AQ H+ F + + + E ES + C +
Sbjct: 206 EHIAILKKSLTV------DKIAQ---HY--FAVKNKDKLEAICRIIDSEEPESAIIFCRT 254
Query: 317 KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSK 376
K LV +QS G +VE H G Q+ R
Sbjct: 255 KRGVDELVEAMQSKG--------YNVEGMH--------------------GDMSQNQRIN 286
Query: 377 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCF 436
TLK F++ + LV++D RG+DVE +++V+NYD P ++Y+HR GRT RA + G +
Sbjct: 287 TLKKFKKATLNFLVATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAY 346
Query: 437 TLLHKDEVKRFKKL 450
+L+ EV +++
Sbjct: 347 SLVTPREVSSIRQI 360
>gi|419231381|ref|ZP_13774170.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC9B]
gi|378081545|gb|EHW43497.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC9B]
Length = 454
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 126/429 (29%), Positives = 196/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRSVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 160 RML--------------------------------DMGFIHDIRRV-----LTKLPAKRQ 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|398022937|ref|XP_003864630.1| ATP-dependent DEAD-box RNA helicase, putative [Leishmania donovani]
gi|322502866|emb|CBZ37948.1| ATP-dependent DEAD-box RNA helicase, putative [Leishmania donovani]
Length = 405
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 119/425 (28%), Positives = 189/425 (44%), Gaps = 73/425 (17%)
Query: 39 LKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA 98
L++ + G PVQ +E I L +D+ + G+GKT S+ +P+++ + R
Sbjct: 41 LQMGIFEKGFEKPSPVQ----EEAIPVALQGKDVLARAKNGTGKTASFVIPVLEKVDTRE 96
Query: 99 VRCLRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAG 157
++AL+++PTR+LALQ V + + GL V + G +++ D+I L
Sbjct: 97 -SYVQALLMVPTRELALQTAQVTKELGKHIPGLEVMVTTGGTTLRDDILRLT-------- 147
Query: 158 ICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAW 217
S V ILVATPGR++D + + + L H LV+DE D+LL + +
Sbjct: 148 -------------SKVHILVATPGRVLD-LASKKAVDLSHCHILVLDEADKLLSQEFMEI 193
Query: 218 LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLT 277
+ D T+LPS S M+ SAT
Sbjct: 194 I---------------DDLYTYLPSQLQS-----------------------MLFSATFP 215
Query: 278 QDPNKLAQLDLHHPLFLT-TGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCI 336
A+ LH+P + E K + Y E + K L L L + I
Sbjct: 216 VTVKTFAERHLHNPYEINLMDELTLK---GVTQYYAFVEERQKIHCLNTLFNKLQINQSI 272
Query: 337 VFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT 396
+F +SV L + G I ++ +Q+Q R++ FREG + LV SD +T
Sbjct: 273 IFCNSVNRVELLAKKITQLGYSCYYI--HARMQQQH-RNRVFHDFREGHCRNLVCSDLIT 329
Query: 397 RGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 456
RG+D++ VN V+N+D P Y +TY+HR GR+ R G LG + D+ ++ Q+ D
Sbjct: 330 RGIDIQAVNVVINFDFPKYAETYLHRIGRSGRFGHLGVAINFVTYDDRYNVYRIEQELDT 389
Query: 457 DSCPI 461
+ PI
Sbjct: 390 EIKPI 394
>gi|297735665|emb|CBI18352.3| unnamed protein product [Vitis vinifera]
Length = 688
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 123/434 (28%), Positives = 197/434 (45%), Gaps = 58/434 (13%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P L A++ G + P+Q+A I GL +RD+ + TGSGKT ++ LP++ +
Sbjct: 217 LSPELLKAVERAGYKTPSPIQMAA----IPLGLQQRDVIGIAETGSGKTAAFVLPMLTYI 272
Query: 95 S-------NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISE 147
S A+V+ PTR+LA Q++D A +G+ V VG SI
Sbjct: 273 SRLPPISEENEAEGPYAVVMAPTRELAQQIEDETVKFAHYLGIKVVSIVGGQSIE----- 327
Query: 148 LIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 207
E G ++ ++++ATPGRL+D + R L Y+V+DE D
Sbjct: 328 -------EQGF---------RIRQGCEVVIATPGRLIDCLE-RRYAVLNQCNYVVLDEAD 370
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R++ ++ + VL S N ++ + +K R
Sbjct: 371 RMIDMGFEPQVVGVLDAMPSSN--------------------LKPENEDEELDEKKIYRT 410
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
M SAT+ +LA+ L +P+ +T G T K + + + ++ + K L LL
Sbjct: 411 TYM-FSATMPPAVERLARKYLRNPVVVTIG-TAGKATDLITQHVIMVKGSEKMPKLQKLL 468
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
LG++ IVF ++ +ST L L+ G ++ G + Q R +L+ FR +
Sbjct: 469 DELGDKTAIVFINTKKSTDTLAKGLDKAG---YRVTTLHGGKSQEQREISLEGFRTKRYN 525
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 447
VLV++D RG+D+ V +V+NYD P I+ Y HR GRT RAG+ G T L + F
Sbjct: 526 VLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLHDSDVF 585
Query: 448 KKLLQKADNDSCPI 461
L Q + P+
Sbjct: 586 YDLKQMLIQSNSPV 599
>gi|170725457|ref|YP_001759483.1| DEAD/DEAH box helicase [Shewanella woodyi ATCC 51908]
gi|169810804|gb|ACA85388.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
51908]
Length = 432
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 116/414 (28%), Positives = 194/414 (46%), Gaps = 78/414 (18%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96
P + A+ G + PVQ Q+ I +D+ ++ TG+GKT ++ALPI+Q + +
Sbjct: 10 PEILRAISECGYQKMTPVQ----QQAIPAIRRGQDVLASAQTGTGKTAAFALPILQKMID 65
Query: 97 RAVRC----LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
+ RAL++ PTR+LA S IAD I++ K
Sbjct: 66 KPSETQRSNTRALILTPTRELA------------------------SQIADNINDYSKHM 101
Query: 153 KLEAGICYDP---EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209
++ Y E Q+++ VDI+VATPGRL++HI A L ++ ++V+DE DR+
Sbjct: 102 QVSVLTIYGGVKLETQAQKIKRGVDIIVATPGRLLEHIQAC-NLNLSNVDFMVLDEADRM 160
Query: 210 LREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVK 269
L + + + VLQ N+ S F + S+K + F DKP
Sbjct: 161 LDMGFVSDIQKVLQAV-----NKNSQKMLFSATFSSSVKKL-----ANDFLDKP------ 204
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329
KL +D + T + Y + +R +L+ E L+
Sbjct: 205 ------------KLISVDKQNTTADTVSQVVYPVEQR-RKRELVSE----------LIGK 241
Query: 330 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 389
++ ++FT++ ++ +L LN G I G + Q R + L+ F+EGK++VL
Sbjct: 242 KNWKQVLIFTATRDAADKLVKELNLDG---IPSSVVHGEKAQGNRRRALREFKEGKVRVL 298
Query: 390 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443
V+++ RG+D++ + VVNYD P + Y+HR GRT RAG+ G +L+ ++E
Sbjct: 299 VATEVAARGLDIQDLEYVVNYDLPFLAEDYVHRIGRTGRAGKSGVAISLVSREE 352
>gi|28897279|ref|NP_796884.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus RIMD
2210633]
gi|260876244|ref|ZP_05888599.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AN-5034]
gi|260896422|ref|ZP_05904918.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus Peru-466]
gi|260902727|ref|ZP_05911122.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AQ4037]
gi|417321363|ref|ZP_12107903.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus 10329]
gi|28805488|dbj|BAC58768.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus RIMD
2210633]
gi|308088406|gb|EFO38101.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus Peru-466]
gi|308092964|gb|EFO42659.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AN-5034]
gi|308107646|gb|EFO45186.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AQ4037]
gi|328472043|gb|EGF42920.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus 10329]
Length = 407
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 132/444 (29%), Positives = 205/444 (46%), Gaps = 78/444 (17%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LD L A++ MG +Q E I L RD+ ++PTG+GKT ++ LP +Q L
Sbjct: 10 LDQNLLEAIEEMGYERPTKIQA----EAIPQALDGRDILASAPTGTGKTAAFVLPALQYL 65
Query: 95 SN---RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
+ R R L++ PTR+LA+QV D A+A L++ G
Sbjct: 66 QDFPRRKPGPARILILTPTRELAMQVADQARALAKNTKLNIFTITG-------------- 111
Query: 152 PKLEAGICY-DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 210
G+ Y + D+L Q DI+VATPGRL ++I+A R F + +LV+DE DR+L
Sbjct: 112 -----GVQYQEHADILATTQ---DIVVATPGRLREYIDAER-FDCRAIEWLVLDEADRML 162
Query: 211 REAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270
+ PTV +L+ NE R+ T L SA T+ GVE GF
Sbjct: 163 DMGFA---PTVDRLS---NECRWR-KQTLLFSA-----TLEGKGVE-GF----------- 198
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL 330
+A L +P A++D PL + +++ + +S L L+ + +
Sbjct: 199 --TADLLNEP---AEIDAKSPL---------RERKKIAQWYHRADSAEHKLALLKHIITE 244
Query: 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 390
E+ IVF + E RL L +I G Q R+ + FR+G + VL+
Sbjct: 245 QAERTIVFLKTRE---RLAELRAQLESAQIPCSWIQGEMPQDRRNNAIARFRDGTVNVLL 301
Query: 391 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
++D RG+D+ V++V+NYD P Y+HR GRTARAG+ G +++ + ++
Sbjct: 302 ATDVAARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDRV 361
Query: 451 LQKADNDSCPIHSIPSSLIESLRP 474
+ D I I+ +RP
Sbjct: 362 ARYVKED------IKERFIKEMRP 379
>gi|163803377|ref|ZP_02197253.1| ATP-dependent RNA helicase SrmB [Vibrio sp. AND4]
gi|159172839|gb|EDP57681.1| ATP-dependent RNA helicase SrmB [Vibrio sp. AND4]
Length = 407
Score = 145 bits (365), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 136/444 (30%), Positives = 205/444 (46%), Gaps = 78/444 (17%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LD L A++ MG VQ E I L RD+ ++PTG+GKT ++ LP +Q L
Sbjct: 10 LDQNLLEAIEQMGYERPTNVQA----EAIPQALDGRDILASAPTGTGKTAAFVLPALQYL 65
Query: 95 SN---RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
+ R R L++ PTR+LA+QV D A+A L++ G
Sbjct: 66 QDFPRRKPGPARILILTPTRELAMQVADQARAMAKNTKLNIFTITG-------------- 111
Query: 152 PKLEAGICY-DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 210
G+ Y + D+L Q DI+VATPGRL ++I+A R F + +L++DE DR+L
Sbjct: 112 -----GVQYQEHADILATTQ---DIVVATPGRLREYIDAER-FDCRAIEWLILDEADRML 162
Query: 211 REAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270
+ PTV +L+ NE R+ T L SA T+ GVE GF
Sbjct: 163 DMGFA---PTVDRLS---NECRWR-KQTLLFSA-----TLEGKGVE-GF----------- 198
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL 330
+A L +P A++D PL R K+ + E KL L + Q+
Sbjct: 199 --TADLLNEP---AKIDAKSPL-----RERKKIAQWYHRAD-DAEHKLALLKHIITEQA- 246
Query: 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 390
E+ IVF + E RL L +I G Q R+ + FREG + VL+
Sbjct: 247 --ERTIVFLKTRE---RLAELRAQLESAQIPCSWIQGEMPQDRRNNAISRFREGAVNVLL 301
Query: 391 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
++D RG+D+ V++V+NYD P Y+HR GRTARAG+ G +++ + +++
Sbjct: 302 ATDVAARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAISIVEAHDQPMLERV 361
Query: 451 LQKADNDSCPIHSIPSSLIESLRP 474
+ D I ++ +RP
Sbjct: 362 ARYVKED------IKERFVKEMRP 379
>gi|348535433|ref|XP_003455205.1| PREDICTED: ATP-dependent RNA helicase DDX55-like [Oreochromis
niloticus]
Length = 590
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 140/492 (28%), Positives = 213/492 (43%), Gaps = 100/492 (20%)
Query: 26 DCPLDHLPC-LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTL 84
D D LP L+ ++ L + + + PVQ A I + +D+ + TGSGKTL
Sbjct: 6 DGTWDRLPVKLNEKILQTLDELKFTHMTPVQSAC----IPLFMSNKDVAAEAVTGSGKTL 61
Query: 85 SYALPIVQTLSNRAVRCLR----ALVVLPTRDLALQVKDVFAA-IAPAVGLSVGLAVGQS 139
++ +PI++ L R + + ALV+ PTR+LA+Q+ +V I L +G S
Sbjct: 62 AFVIPIIELLLKREEKLKKMQVGALVITPTRELAVQISEVMEQFIEKFPQFKQILLIGGS 121
Query: 140 SIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHI-NATRGFTL--- 195
+ A EDV + +I++ATPGRL D + G L
Sbjct: 122 NPA--------------------EDVEKFKDKGANIVIATPGRLEDMFRRKSDGLDLASS 161
Query: 196 -EHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCG 254
+ L LV+DE DRLL ++A L T+L G L RR G
Sbjct: 162 VKSLDVLVLDEADRLLDMGFEASLNTIL----------------------GYLPKQRRTG 199
Query: 255 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE-------TRYKLPERL 307
+ SAT TQ+ KL + L +P+ +T E T K P RL
Sbjct: 200 ----------------LFSATQTQELEKLVRAGLRNPVRITVKEKGLAAAATAQKTPSRL 243
Query: 308 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGEL------RIK 361
+Y IC ++ K LVA L+ EK +VF S+ C + ++G + ++
Sbjct: 244 SNYYTICRAEDKFNNLVAFLRQHKHEKLLVFFST-------CACVEYYGRVLEMLVKKVT 296
Query: 362 IKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIH 421
I G + R+ FR+ K +LV +D M RG+D+ VN V+ YD P+ ++H
Sbjct: 297 IHCIHGKMKHK-RNSIFADFRKLKSGILVCTDVMARGIDIPDVNWVLQYDPPSSASAFVH 355
Query: 422 RAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSI-PSSLIESLRPVYKSVR 480
R GRTAR G G L E L + N CP+ + P + + P K++
Sbjct: 356 RCGRTARIGNYGDALVFLLPMEETYVNFL---SINQKCPLQKMSPIKDVVDVLPKVKAM- 411
Query: 481 GGISDEAFWKVG 492
+ D A ++ G
Sbjct: 412 -ALEDRAMFERG 422
>gi|325189223|emb|CCA23746.1| DEAD box helicase putative [Albugo laibachii Nc14]
Length = 809
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 129/431 (29%), Positives = 196/431 (45%), Gaps = 67/431 (15%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101
A+Q M P+Q+ + I GL +RD+ + TGSGKT ++ +PI+ L +
Sbjct: 364 AIQEMRFERPSPIQM----QAIPIGLAKRDIIGIAETGSGKTAAFLIPIIAYLYHLPAVM 419
Query: 102 LR--------ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPK 153
L AL++ PTR+LALQ++ AI VG+ Q+ I
Sbjct: 420 LERTGEQGPLALIMAPTRELALQIEQ--EAIKLCKHTQVGVVGSQNRIR----------T 467
Query: 154 LEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA 213
L ED +L+ VDI++ TPGRLMD + + L Y+V+DE DR++
Sbjct: 468 LSVVGGQSIEDQAFKLRQGVDIIIGTPGRLMDCME-SHYLVLNQCNYVVLDEADRMIDMG 526
Query: 214 YQAWLPTVLQ----LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVK 269
++ + VL L +S+NE +ER + + V
Sbjct: 527 FEPQVVAVLDNMGSLLKSENEEEMEKQ------------------LERANNAQEFRYRVT 568
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ- 328
M+ SAT+ + +LA+ L HP + G+ +R+E + S K L L LL
Sbjct: 569 MMFSATMPTEVERLAKTYLRHPAIIKIGDEDSGKNKRIEQRVVFLNSGKKKLRLQHLLHE 628
Query: 329 ---SLGE------------EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSV 373
S G+ +K +VF + + L L G R I G + Q
Sbjct: 629 TLSSSGQVRISRKEKVVDGQKVMVFVNIKKECDVLGKYLAQEG-FRTTI--LHGGKSQEQ 685
Query: 374 RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 433
R ++L+ FREG VLV++D RG+D+ V +VVNYD P+ I+ Y HR GRT RAG+ G
Sbjct: 686 REESLRGFREGFCDVLVATDVAGRGLDIPDVTHVVNYDLPSKIENYCHRIGRTGRAGKEG 745
Query: 434 RCFTLL-HKDE 443
+ L ++DE
Sbjct: 746 VAISFLTNEDE 756
>gi|146100408|ref|XP_001468856.1| putative ATP-dependent DEAD-box RNA helicase [Leishmania infantum
JPCM5]
gi|134073225|emb|CAM71946.1| putative ATP-dependent DEAD-box RNA helicase [Leishmania infantum
JPCM5]
Length = 405
Score = 144 bits (364), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 119/425 (28%), Positives = 189/425 (44%), Gaps = 73/425 (17%)
Query: 39 LKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA 98
L++ + G PVQ +E I L +D+ + G+GKT S+ +P+++ + R
Sbjct: 41 LQMGIFEKGFEKPSPVQ----EEAIPVALQGKDVLARAKNGTGKTASFVIPVLEKVDTRE 96
Query: 99 VRCLRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAG 157
++AL+++PTR+LALQ V + + GL V + G +++ D+I L
Sbjct: 97 -SYVQALLMVPTRELALQTAQVTKELGKHIPGLEVMVTTGGTTLRDDILRLT-------- 147
Query: 158 ICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAW 217
S V ILVATPGR++D + + + L H LV+DE D+LL + +
Sbjct: 148 -------------SKVHILVATPGRVLD-LASKKAVDLSHCHILVLDEADKLLSQEFMEI 193
Query: 218 LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLT 277
+ D T+LPS S M+ SAT
Sbjct: 194 I---------------DDLYTYLPSQLQS-----------------------MLFSATFP 215
Query: 278 QDPNKLAQLDLHHPLFLT-TGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCI 336
A+ LH+P + E K + Y E + K L L L + I
Sbjct: 216 VTVKTFAERHLHNPYEINLMDELTLK---GVTQYYAFVEERQKIHCLNTLFNKLQINQSI 272
Query: 337 VFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT 396
+F +SV L + G I ++ +Q+Q R++ FREG + LV SD +T
Sbjct: 273 IFCNSVNRVELLAKKITQLGYSCYYI--HARMQQQH-RNRVFHDFREGHCRNLVCSDLIT 329
Query: 397 RGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 456
RG+D++ VN V+N+D P Y +TY+HR GR+ R G LG + D+ ++ Q+ D
Sbjct: 330 RGIDIQAVNVVINFDFPKYSETYLHRIGRSGRFGHLGVAINFVTYDDRYNVYRIEQELDT 389
Query: 457 DSCPI 461
+ PI
Sbjct: 390 EIKPI 394
>gi|153938870|ref|YP_001392080.1| DEAD/DEAH box helicase [Clostridium botulinum F str. Langeland]
gi|384463072|ref|YP_005675667.1| ATP-dependent RNA helicase [Clostridium botulinum F str. 230613]
gi|152934766|gb|ABS40264.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum F str. Langeland]
gi|295320089|gb|ADG00467.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum F str. 230613]
Length = 524
Score = 144 bits (364), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 118/434 (27%), Positives = 203/434 (46%), Gaps = 81/434 (18%)
Query: 24 FEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKT 83
E+ ++L + LK A+Q+MG F A+ +++I L D+ + TG+GKT
Sbjct: 1 MENKNFENLNLNEDVLK-AIQHMG----FETPSAIQEKSIPVVLEGADVIAQAQTGTGKT 55
Query: 84 LSYALPIVQTLSNR-AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIA 142
L++ P++ L ++ + ++ALV+ PTR+LALQ+KD ++ V G SI
Sbjct: 56 LAFGAPVISALCDKEKKKGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVYGGESIE 115
Query: 143 DEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLV 202
+I ++++S VDI+V TPGR++DHIN R L + +L+
Sbjct: 116 RQI---------------------KDIKSGVDIVVGTPGRVLDHIN-RRTLKLGGIDFLI 153
Query: 203 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDK 262
+DE D +L + + T+++ T + + A+ P I++ + KD
Sbjct: 154 LDEADEMLNMGFIEDIETIMESTSEEKQTMLFSATMPAP--------IKKLALNYMKKDV 205
Query: 263 PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKL------PERLESYKLICES 316
+ +VK L+ +K+AQ H+ F + + + E ES + C +
Sbjct: 206 EHIAIVKKSLTV------DKIAQ---HY--FAVKNKDKLEAICRIIDSEEPESAIIFCRT 254
Query: 317 KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSK 376
K LV +QS G +VE H G Q+ R
Sbjct: 255 KRGVDELVEAMQSKG--------YNVEGMH--------------------GDMSQNQRIN 286
Query: 377 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCF 436
TLK F++ + LV++D RG+DVE +++V+NYD P ++Y+HR GRT RA + G +
Sbjct: 287 TLKKFKKATLNFLVATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAY 346
Query: 437 TLLHKDEVKRFKKL 450
+L+ EV +++
Sbjct: 347 SLVTPREVSSIRQI 360
>gi|419344419|ref|ZP_13885801.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC13A]
gi|419348857|ref|ZP_13890210.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC13B]
gi|419353846|ref|ZP_13895128.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC13C]
gi|419359241|ref|ZP_13900466.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC13D]
gi|378188847|gb|EHX49441.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC13A]
gi|378204519|gb|EHX64935.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC13B]
gi|378206700|gb|EHX67102.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC13D]
gi|378207818|gb|EHX68206.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC13C]
Length = 445
Score = 144 bits (364), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 125/429 (29%), Positives = 197/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR + K +
Sbjct: 160 RML--------------------------------DMGFIHDIRRVLTKLPAKRQ----- 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|366160940|ref|ZP_09460802.1| ATP-dependent RNA helicase RhlE [Escherichia sp. TW09308]
gi|432371534|ref|ZP_19614587.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE11]
gi|430898972|gb|ELC21078.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE11]
Length = 454
Score = 144 bits (364), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 125/429 (29%), Positives = 198/429 (46%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
+R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ISREPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR + K +
Sbjct: 160 RML--------------------------------DMGFIHDIRRVLTKLPAKRQ----- 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + + LA+ LH+PL + R E++ + + K K L ++
Sbjct: 183 -NLLFSATFSDEIKALAEKLLHNPLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|424817011|ref|ZP_18242162.1| ATP-dependent RNA helicase RhlE [Escherichia fergusonii ECD227]
gi|325498031|gb|EGC95890.1| ATP-dependent RNA helicase RhlE [Escherichia fergusonii ECD227]
Length = 453
Score = 144 bits (364), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 125/429 (29%), Positives = 197/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR + K +
Sbjct: 160 RML--------------------------------DMGFIHDIRRVLTKLPAKRQ----- 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKNLAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|432717836|ref|ZP_19952831.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE9]
gi|431265515|gb|ELF57079.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE9]
Length = 454
Score = 144 bits (364), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 126/429 (29%), Positives = 196/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 160 RML--------------------------------DMGFIHDIRRV-----LTKLPAKRQ 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|417288603|ref|ZP_12075888.1| ATP-dependent RNA helicase RhlE [Escherichia coli TW07793]
gi|386247395|gb|EII93568.1| ATP-dependent RNA helicase RhlE [Escherichia coli TW07793]
Length = 453
Score = 144 bits (364), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 126/429 (29%), Positives = 196/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 160 RML--------------------------------DMGFIHDIRRV-----LTKLPAKRQ 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|225443496|ref|XP_002270644.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 21-like [Vitis
vinifera]
Length = 709
Score = 144 bits (364), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 123/434 (28%), Positives = 197/434 (45%), Gaps = 58/434 (13%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P L A++ G + P+Q+A I GL +RD+ + TGSGKT ++ LP++ +
Sbjct: 296 LSPELLKAVERAGYKTPSPIQMAA----IPLGLQQRDVIGIAETGSGKTAAFVLPMLTYI 351
Query: 95 S-------NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISE 147
S A+V+ PTR+LA Q++D A +G+ V VG SI
Sbjct: 352 SRLPPISEENEAEGPYAVVMAPTRELAQQIEDETVKFAHYLGIKVVSIVGGQSIE----- 406
Query: 148 LIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 207
E G ++ ++++ATPGRL+D + R L Y+V+DE D
Sbjct: 407 -------EQGF---------RIRQGCEVVIATPGRLIDCLE-RRYAVLNQCNYVVLDEAD 449
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R++ ++ + VL S N ++ + +K R
Sbjct: 450 RMIDMGFEPQVVGVLDAMPSSN--------------------LKPENEDEELDEKKIYRT 489
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
M SAT+ +LA+ L +P+ +T G T K + + + ++ + K L LL
Sbjct: 490 TYM-FSATMPPAVERLARKYLRNPVVVTIG-TAGKATDLITQHVIMVKGSEKMPKLQKLL 547
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
LG++ IVF ++ +ST L L+ G ++ G + Q R +L+ FR +
Sbjct: 548 DELGDKTAIVFINTKKSTDTLAKGLDKAG---YRVTTLHGGKSQEQREISLEGFRTKRYN 604
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 447
VLV++D RG+D+ V +V+NYD P I+ Y HR GRT RAG+ G T L + F
Sbjct: 605 VLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLHDSDVF 664
Query: 448 KKLLQKADNDSCPI 461
L Q + P+
Sbjct: 665 YDLKQMLIQSNSPV 678
>gi|218549636|ref|YP_002383427.1| ATP-dependent RNA helicase RhlE [Escherichia fergusonii ATCC 35469]
gi|218357177|emb|CAQ89812.1| RNA helicase [Escherichia fergusonii ATCC 35469]
Length = 454
Score = 144 bits (364), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 126/429 (29%), Positives = 196/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 160 RML--------------------------------DMGFIHDIRRV-----LTKLPAKRQ 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKNLAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|432849252|ref|ZP_20080474.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE144]
gi|431401252|gb|ELG84596.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE144]
Length = 454
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 126/429 (29%), Positives = 197/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
+R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ISRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 160 RML--------------------------------DMGFIHDIRRV-----LTKLPAKRQ 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|422804761|ref|ZP_16853193.1| DEAD/DEAH box helicase [Escherichia fergusonii B253]
gi|324114364|gb|EGC08333.1| DEAD/DEAH box helicase [Escherichia fergusonii B253]
Length = 453
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 125/429 (29%), Positives = 197/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR + K +
Sbjct: 160 RML--------------------------------DMGFIHDIRRVLTKLPAKRQ----- 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|432542177|ref|ZP_19779033.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE236]
gi|432547647|ref|ZP_19784434.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE237]
gi|432620931|ref|ZP_19856972.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE76]
gi|432814385|ref|ZP_20048175.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE115]
gi|431076431|gb|ELD83926.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE236]
gi|431083583|gb|ELD89755.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE237]
gi|431161397|gb|ELE61868.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE76]
gi|431366608|gb|ELG53105.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE115]
Length = 454
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 126/429 (29%), Positives = 196/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 160 RML--------------------------------DMGFIHDIRRV-----LTKLPAKRQ 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|331656814|ref|ZP_08357776.1| ATP-dependent RNA helicase RhlE [Escherichia coli TA206]
gi|331682303|ref|ZP_08382922.1| ATP-dependent RNA helicase RhlE [Escherichia coli H299]
gi|450186646|ref|ZP_21889564.1| ATP-dependent RNA helicase RhlE [Escherichia coli SEPT362]
gi|331055062|gb|EGI27071.1| ATP-dependent RNA helicase RhlE [Escherichia coli TA206]
gi|331079934|gb|EGI51113.1| ATP-dependent RNA helicase RhlE [Escherichia coli H299]
gi|449324165|gb|EMD14102.1| ATP-dependent RNA helicase RhlE [Escherichia coli SEPT362]
Length = 453
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 126/429 (29%), Positives = 196/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 160 RML--------------------------------DMGFIHDIRRV-----LTKLPAKRQ 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|26246770|ref|NP_752810.1| ATP-dependent RNA helicase RhlE [Escherichia coli CFT073]
gi|110641001|ref|YP_668729.1| ATP-dependent RNA helicase RhlE [Escherichia coli 536]
gi|191174652|ref|ZP_03036132.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli F11]
gi|222155523|ref|YP_002555662.1| ATP-dependent RNA helicase rhlE [Escherichia coli LF82]
gi|227884241|ref|ZP_04002046.1| ATP-dependent RNA helicase RhlE [Escherichia coli 83972]
gi|300939831|ref|ZP_07154469.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 21-1]
gi|300992077|ref|ZP_07179779.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 200-1]
gi|300993271|ref|ZP_07180318.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 45-1]
gi|301051284|ref|ZP_07198110.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 185-1]
gi|306812801|ref|ZP_07446994.1| ATP-dependent RNA helicase RhlE [Escherichia coli NC101]
gi|331646014|ref|ZP_08347117.1| ATP-dependent RNA helicase RhlE [Escherichia coli M605]
gi|386628337|ref|YP_006148057.1| ATP-dependent RNA helicase RhlE [Escherichia coli str. 'clone D
i2']
gi|386633257|ref|YP_006152976.1| ATP-dependent RNA helicase RhlE [Escherichia coli str. 'clone D
i14']
gi|386638150|ref|YP_006104948.1| ATP-dependent RNA helicase [Escherichia coli ABU 83972]
gi|387616054|ref|YP_006119076.1| ATP-dependent RNA helicase RhlE [Escherichia coli O83:H1 str. NRG
857C]
gi|416335171|ref|ZP_11671882.1| ATP-dependent RNA helicase RhlE [Escherichia coli WV_060327]
gi|417661322|ref|ZP_12310903.1| ATP-dependent RNA helicase RhlE [Escherichia coli AA86]
gi|419699658|ref|ZP_14227271.1| ATP-dependent RNA helicase RhlE [Escherichia coli SCI-07]
gi|422364701|ref|ZP_16445212.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 153-1]
gi|422379081|ref|ZP_16459284.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 57-2]
gi|432380422|ref|ZP_19623377.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE15]
gi|432386249|ref|ZP_19629145.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE16]
gi|432396679|ref|ZP_19639464.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE25]
gi|432405614|ref|ZP_19648334.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE28]
gi|432410799|ref|ZP_19653480.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE39]
gi|432430847|ref|ZP_19673290.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE187]
gi|432435375|ref|ZP_19677774.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE188]
gi|432455662|ref|ZP_19697861.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE201]
gi|432470167|ref|ZP_19712219.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE206]
gi|432494600|ref|ZP_19736416.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE214]
gi|432503439|ref|ZP_19745174.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE220]
gi|432512992|ref|ZP_19750227.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE224]
gi|432522884|ref|ZP_19760021.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE230]
gi|432567630|ref|ZP_19804155.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE53]
gi|432591850|ref|ZP_19828177.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE60]
gi|432606617|ref|ZP_19842810.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE67]
gi|432610468|ref|ZP_19846639.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE72]
gi|432645226|ref|ZP_19881025.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE86]
gi|432650259|ref|ZP_19886019.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE87]
gi|432655024|ref|ZP_19890736.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE93]
gi|432679216|ref|ZP_19914615.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE143]
gi|432698104|ref|ZP_19933270.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE169]
gi|432712457|ref|ZP_19947506.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE8]
gi|432722309|ref|ZP_19957232.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE17]
gi|432726851|ref|ZP_19961732.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE18]
gi|432731462|ref|ZP_19966298.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE45]
gi|432740537|ref|ZP_19975258.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE23]
gi|432744724|ref|ZP_19979423.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE43]
gi|432758541|ref|ZP_19993042.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE46]
gi|432782638|ref|ZP_20016822.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE63]
gi|432843102|ref|ZP_20076437.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE141]
gi|432893524|ref|ZP_20105536.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE165]
gi|432903336|ref|ZP_20112802.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE194]
gi|432942848|ref|ZP_20140002.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE183]
gi|432970909|ref|ZP_20159787.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE207]
gi|432977456|ref|ZP_20166279.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE209]
gi|432984426|ref|ZP_20173163.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE215]
gi|432989850|ref|ZP_20178516.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE217]
gi|432994527|ref|ZP_20183141.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE218]
gi|432998946|ref|ZP_20187484.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE223]
gi|433037791|ref|ZP_20225403.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE113]
gi|433057090|ref|ZP_20244173.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE124]
gi|433076958|ref|ZP_20263520.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE131]
gi|433081679|ref|ZP_20268153.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE133]
gi|433086407|ref|ZP_20272802.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE137]
gi|433100308|ref|ZP_20286415.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE145]
gi|433110072|ref|ZP_20295946.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE150]
gi|433114682|ref|ZP_20300496.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE153]
gi|433124341|ref|ZP_20309928.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE160]
gi|433138401|ref|ZP_20323685.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE167]
gi|433143374|ref|ZP_20328540.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE168]
gi|433148188|ref|ZP_20333252.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE174]
gi|433187583|ref|ZP_20371700.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE88]
gi|433197356|ref|ZP_20381279.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE94]
gi|433206916|ref|ZP_20390611.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE97]
gi|433211664|ref|ZP_20395277.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE99]
gi|442606347|ref|ZP_21021147.1| ATP-dependent RNA helicase RhlE [Escherichia coli Nissle 1917]
gi|26107169|gb|AAN79353.1|AE016757_257 Putative ATP-dependent RNA helicase rhlE [Escherichia coli CFT073]
gi|110342593|gb|ABG68830.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli 536]
gi|190905071|gb|EDV64730.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli F11]
gi|222032528|emb|CAP75267.1| ATP-dependent RNA helicase rhlE [Escherichia coli LF82]
gi|227838993|gb|EEJ49459.1| ATP-dependent RNA helicase RhlE [Escherichia coli 83972]
gi|300297043|gb|EFJ53428.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 185-1]
gi|300305406|gb|EFJ59926.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 200-1]
gi|300406679|gb|EFJ90217.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 45-1]
gi|300455363|gb|EFK18856.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 21-1]
gi|305853564|gb|EFM54003.1| ATP-dependent RNA helicase RhlE [Escherichia coli NC101]
gi|307552642|gb|ADN45417.1| ATP-dependent RNA helicase [Escherichia coli ABU 83972]
gi|312945315|gb|ADR26142.1| ATP-dependent RNA helicase RhlE [Escherichia coli O83:H1 str. NRG
857C]
gi|315292604|gb|EFU51956.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 153-1]
gi|320196708|gb|EFW71331.1| ATP-dependent RNA helicase RhlE [Escherichia coli WV_060327]
gi|324009618|gb|EGB78837.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 57-2]
gi|330910540|gb|EGH39050.1| ATP-dependent RNA helicase RhlE [Escherichia coli AA86]
gi|331044766|gb|EGI16893.1| ATP-dependent RNA helicase RhlE [Escherichia coli M605]
gi|355419236|gb|AER83433.1| ATP-dependent RNA helicase RhlE [Escherichia coli str. 'clone D
i2']
gi|355424156|gb|AER88352.1| ATP-dependent RNA helicase RhlE [Escherichia coli str. 'clone D
i14']
gi|380349203|gb|EIA37478.1| ATP-dependent RNA helicase RhlE [Escherichia coli SCI-07]
gi|430909170|gb|ELC30555.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE16]
gi|430910737|gb|ELC32037.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE15]
gi|430916999|gb|ELC38047.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE25]
gi|430931768|gb|ELC52202.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE28]
gi|430937297|gb|ELC57552.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE39]
gi|430955287|gb|ELC74070.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE187]
gi|430965703|gb|ELC83112.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE188]
gi|430984389|gb|ELD01012.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE201]
gi|430999345|gb|ELD15427.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE206]
gi|431027205|gb|ELD40268.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE214]
gi|431041485|gb|ELD51985.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE220]
gi|431044031|gb|ELD54311.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE224]
gi|431054194|gb|ELD63775.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE230]
gi|431102578|gb|ELE07392.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE53]
gi|431131766|gb|ELE33782.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE60]
gi|431140069|gb|ELE41846.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE67]
gi|431150809|gb|ELE51851.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE72]
gi|431182457|gb|ELE82274.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE86]
gi|431192815|gb|ELE92159.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE87]
gi|431193934|gb|ELE93204.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE93]
gi|431224276|gb|ELF21503.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE143]
gi|431246244|gb|ELF40510.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE169]
gi|431258590|gb|ELF51353.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE8]
gi|431267386|gb|ELF58903.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE17]
gi|431274639|gb|ELF65684.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE18]
gi|431277717|gb|ELF68721.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE45]
gi|431285128|gb|ELF75964.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE23]
gi|431294200|gb|ELF84380.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE43]
gi|431311130|gb|ELF99308.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE46]
gi|431331037|gb|ELG18300.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE63]
gi|431396873|gb|ELG80335.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE141]
gi|431424504|gb|ELH06600.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE165]
gi|431435780|gb|ELH17388.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE194]
gi|431452735|gb|ELH33146.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE183]
gi|431480967|gb|ELH60681.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE209]
gi|431486046|gb|ELH65703.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE207]
gi|431496725|gb|ELH76303.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE217]
gi|431505005|gb|ELH83628.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE215]
gi|431508740|gb|ELH87011.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE218]
gi|431513286|gb|ELH91369.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE223]
gi|431553961|gb|ELI27843.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE113]
gi|431573658|gb|ELI46455.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE124]
gi|431600236|gb|ELI69908.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE131]
gi|431605514|gb|ELI74903.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE133]
gi|431609064|gb|ELI78397.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE137]
gi|431621765|gb|ELI90555.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE145]
gi|431630708|gb|ELI99036.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE150]
gi|431636392|gb|ELJ04523.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE153]
gi|431649148|gb|ELJ16507.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE160]
gi|431664579|gb|ELJ31313.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE167]
gi|431665476|gb|ELJ32194.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE168]
gi|431676301|gb|ELJ42421.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE174]
gi|431708583|gb|ELJ73091.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE88]
gi|431725002|gb|ELJ88915.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE94]
gi|431732132|gb|ELJ95588.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE97]
gi|431735862|gb|ELJ99206.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE99]
gi|441712423|emb|CCQ07124.1| ATP-dependent RNA helicase RhlE [Escherichia coli Nissle 1917]
Length = 453
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 126/429 (29%), Positives = 196/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 160 RML--------------------------------DMGFIHDIRRV-----LTKLPAKRQ 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|432601332|ref|ZP_19837581.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE66]
gi|431143165|gb|ELE44903.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE66]
Length = 453
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 125/429 (29%), Positives = 197/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR + K +
Sbjct: 160 RML--------------------------------DMGFIHDIRRVLTKLPAKRQ----- 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|406986526|gb|EKE07099.1| hypothetical protein ACD_18C00189G0005 [uncultured bacterium]
Length = 451
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 114/427 (26%), Positives = 201/427 (47%), Gaps = 79/427 (18%)
Query: 43 LQNMGISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101
L+N G P+Q V PG E +D+ + TG+GKTL+Y +P++Q L+
Sbjct: 41 LKNKGFEKPTPIQHQVI-----PGALEGKDVVGIAQTGTGKTLAYGIPLIQNLATG--NG 93
Query: 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD 161
+ L+++PTR+LA QV D ++I ++GL + + +G G+
Sbjct: 94 GQGLILVPTRELAQQVADALSSIGKSLGLRIAVIIG-------------------GVSSR 134
Query: 162 PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 221
P+ +++L++ I++ATPGRL D + R + L+ + L++DE DR+L
Sbjct: 135 PQ--IKDLRNNPHIVIATPGRL-DDLMEQRQYRLDKVSMLILDEADRMLDVG-------- 183
Query: 222 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 281
FLP IRR FK P R M+ SAT+ +
Sbjct: 184 -----------------FLPQ-------IRRI-----FKLAPVNRQT-MLFSATMPPSIS 213
Query: 282 KLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 341
LA + PL + E +E I K L +LL++ ++ ++F+ +
Sbjct: 214 SLASAFMKMPLRIEIAPQGTS-AENVEQEVFIISKPDKMRLLYSLLKTYKDDTVLIFSRT 272
Query: 342 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 401
R+ +N G +I + Q R +L+ F G+ +++V++D RG+DV
Sbjct: 273 KHGAKRIARDINTVGHSATEIHSN---RTQGQRKASLEGFSRGRFRIMVATDIAARGIDV 329
Query: 402 EGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL---HKDEVKRFKKLLQKADNDS 458
+ ++ V+N+D P + Y+HR GRT RAG+ G+ + + K ++++ +KL++K +
Sbjct: 330 KQISLVINFDLPDNSEDYVHRIGRTGRAGRSGKAISFVTPSEKMDIRKIEKLIRK----T 385
Query: 459 CPIHSIP 465
PI +P
Sbjct: 386 LPILDLP 392
>gi|425299062|ref|ZP_18689104.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli 07798]
gi|408221005|gb|EKI44988.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli 07798]
Length = 448
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 126/429 (29%), Positives = 196/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 3 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 58
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 59 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 103
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 104 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 154
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 155 RML--------------------------------DMGFIHDIRRV-----LTKLPAKRQ 177
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 178 -NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 235
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 236 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 292
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 293 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 352
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 353 RDIEKLLKK 361
>gi|91209829|ref|YP_539815.1| ATP-dependent RNA helicase RhlE [Escherichia coli UTI89]
gi|218557702|ref|YP_002390615.1| ATP-dependent RNA helicase RhlE [Escherichia coli S88]
gi|218688583|ref|YP_002396795.1| ATP-dependent RNA helicase RhlE [Escherichia coli ED1a]
gi|237707244|ref|ZP_04537725.1| ATP-dependent RNA helicase RhlE [Escherichia sp. 3_2_53FAA]
gi|386598515|ref|YP_006100021.1| ATP-dependent RNA helicase [Escherichia coli IHE3034]
gi|386605309|ref|YP_006111609.1| ATP-dependent RNA helicase RhlE [Escherichia coli UM146]
gi|417083288|ref|ZP_11951383.1| ATP-dependent RNA helicase RhlE [Escherichia coli cloneA_i1]
gi|419945239|ref|ZP_14461691.1| ATP-dependent RNA helicase RhlE [Escherichia coli HM605]
gi|422753403|ref|ZP_16807230.1| DEAD/DEAH box helicase [Escherichia coli H263]
gi|422839261|ref|ZP_16887233.1| ATP-dependent RNA helicase rhlE [Escherichia coli H397]
gi|432357084|ref|ZP_19600329.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE4]
gi|432361555|ref|ZP_19604739.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE5]
gi|432440118|ref|ZP_19682471.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE189]
gi|432445289|ref|ZP_19687595.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE191]
gi|432464759|ref|ZP_19706865.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE205]
gi|432572730|ref|ZP_19809221.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE55]
gi|432582855|ref|ZP_19819265.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE57]
gi|432587037|ref|ZP_19823407.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE58]
gi|432596680|ref|ZP_19832961.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE62]
gi|432753536|ref|ZP_19988102.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE22]
gi|432777676|ref|ZP_20011926.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE59]
gi|432786464|ref|ZP_20020629.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE65]
gi|432801077|ref|ZP_20035062.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE84]
gi|432820056|ref|ZP_20053769.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE118]
gi|432826272|ref|ZP_20059927.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE123]
gi|432897685|ref|ZP_20108516.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE192]
gi|433004263|ref|ZP_20192701.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE227]
gi|433012971|ref|ZP_20201347.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE104]
gi|433022657|ref|ZP_20210669.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE106]
gi|433027779|ref|ZP_20215652.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE109]
gi|433071845|ref|ZP_20258540.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE129]
gi|433119347|ref|ZP_20305054.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE157]
gi|433152888|ref|ZP_20337854.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE176]
gi|433167597|ref|ZP_20352264.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE180]
gi|433182333|ref|ZP_20366629.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE85]
gi|433323476|ref|ZP_20400825.1| ATP-dependent RNA helicase RhlE [Escherichia coli J96]
gi|91071403|gb|ABE06284.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli UTI89]
gi|218364471|emb|CAR02153.1| RNA helicase [Escherichia coli S88]
gi|218426147|emb|CAR06967.1| RNA helicase [Escherichia coli ED1a]
gi|226898454|gb|EEH84713.1| ATP-dependent RNA helicase RhlE [Escherichia sp. 3_2_53FAA]
gi|294493052|gb|ADE91808.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Escherichia coli
IHE3034]
gi|307627793|gb|ADN72097.1| ATP-dependent RNA helicase RhlE [Escherichia coli UM146]
gi|323958086|gb|EGB53795.1| DEAD/DEAH box helicase [Escherichia coli H263]
gi|355352704|gb|EHG01878.1| ATP-dependent RNA helicase RhlE [Escherichia coli cloneA_i1]
gi|371609793|gb|EHN98326.1| ATP-dependent RNA helicase rhlE [Escherichia coli H397]
gi|388416387|gb|EIL76278.1| ATP-dependent RNA helicase RhlE [Escherichia coli HM605]
gi|430879262|gb|ELC02612.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE4]
gi|430889445|gb|ELC12106.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE5]
gi|430969031|gb|ELC86193.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE189]
gi|430975131|gb|ELC92033.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE191]
gi|430996565|gb|ELD12841.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE205]
gi|431111068|gb|ELE14985.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE55]
gi|431119871|gb|ELE22870.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE57]
gi|431123204|gb|ELE25946.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE58]
gi|431132465|gb|ELE34464.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE62]
gi|431304772|gb|ELF93296.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE22]
gi|431329865|gb|ELG17150.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE59]
gi|431341100|gb|ELG28114.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE65]
gi|431350312|gb|ELG37124.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE84]
gi|431370312|gb|ELG56113.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE118]
gi|431374056|gb|ELG59651.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE123]
gi|431428412|gb|ELH10353.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE192]
gi|431517584|gb|ELH95106.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE227]
gi|431534619|gb|ELI11099.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE104]
gi|431539394|gb|ELI15145.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE106]
gi|431545406|gb|ELI20061.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE109]
gi|431592521|gb|ELI63097.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE129]
gi|431648209|gb|ELJ15608.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE157]
gi|431677981|gb|ELJ43993.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE176]
gi|431693120|gb|ELJ58537.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE180]
gi|431711126|gb|ELJ75485.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE85]
gi|432348179|gb|ELL42631.1| ATP-dependent RNA helicase RhlE [Escherichia coli J96]
Length = 453
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 126/429 (29%), Positives = 196/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 160 RML--------------------------------DMGFIHDIRRV-----LTKLPAKRQ 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|432390781|ref|ZP_19633639.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE21]
gi|432792011|ref|ZP_20026101.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE78]
gi|432797974|ref|ZP_20031999.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE79]
gi|430921399|gb|ELC42223.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE21]
gi|431341593|gb|ELG28599.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE78]
gi|431344996|gb|ELG31928.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE79]
Length = 454
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 126/429 (29%), Positives = 196/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 160 RML--------------------------------DMGFIHDIRRV-----LTKLPAKRQ 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|417307244|ref|ZP_12094116.1| ATP-dependent RNA helicase rhlE [Escherichia coli PCN033]
gi|338771115|gb|EGP25863.1| ATP-dependent RNA helicase rhlE [Escherichia coli PCN033]
Length = 453
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 126/429 (29%), Positives = 196/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 160 RML--------------------------------DMGFIHDIRRV-----LTKLPAKRQ 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|425287375|ref|ZP_18678299.1| ATP-dependent RNA helicase rhlE [Escherichia coli 3006]
gi|408218139|gb|EKI42372.1| ATP-dependent RNA helicase rhlE [Escherichia coli 3006]
Length = 454
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 125/429 (29%), Positives = 197/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR + K +
Sbjct: 160 RML--------------------------------DMGFIHDIRRVLTKLPAKRQ----- 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|417137678|ref|ZP_11981468.1| ATP-dependent RNA helicase RhlE [Escherichia coli 97.0259]
gi|386159242|gb|EIH15575.1| ATP-dependent RNA helicase RhlE [Escherichia coli 97.0259]
Length = 453
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 126/429 (29%), Positives = 196/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 160 RML--------------------------------DMGFIHDIRRV-----LTKLPAKRQ 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|415836765|ref|ZP_11519063.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli RN587/1]
gi|417282857|ref|ZP_12070155.1| ATP-dependent RNA helicase RhlE [Escherichia coli 3003]
gi|425276656|ref|ZP_18667983.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli
ARS4.2123]
gi|323190923|gb|EFZ76190.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli RN587/1]
gi|386244062|gb|EII85794.1| ATP-dependent RNA helicase RhlE [Escherichia coli 3003]
gi|408206357|gb|EKI31167.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli
ARS4.2123]
Length = 453
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 126/429 (29%), Positives = 196/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 160 RML--------------------------------DMGFIHDIRRV-----LTKLPAKRQ 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSYMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|423107485|ref|ZP_17095180.1| ATP-dependent RNA helicase rhlE [Klebsiella oxytoca 10-5243]
gi|376388510|gb|EHT01205.1| ATP-dependent RNA helicase rhlE [Klebsiella oxytoca 10-5243]
Length = 454
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 127/429 (29%), Positives = 197/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LNPEILRAVAEQGYVEPTPIQ----QQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
++ R +RAL++ PTR+LA Q+ G V S + L+
Sbjct: 64 IHKEPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNVRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+S VDILVATPGRL+D H NA +L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRSGVDILVATPGRLLDLEHQNAV---SLDKVEVLVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 160 RML--------------------------------DMGFIHDIRRV-----LAKLPAKRQ 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R E++ + K K L ++
Sbjct: 183 -NLLFSATFSDDIKSLAEKLLHNPLEIEVAR-RNTASEQVSQLVHFVDKKRKRELLSQMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GEGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGGIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK-- 445
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE K
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 446 -RFKKLLQK 453
++LL+K
Sbjct: 358 HDIERLLKK 366
>gi|422970694|ref|ZP_16974206.1| ATP-dependent RNA helicase rhlE [Escherichia coli TA124]
gi|371600132|gb|EHN88909.1| ATP-dependent RNA helicase rhlE [Escherichia coli TA124]
Length = 454
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 125/429 (29%), Positives = 197/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR + K +
Sbjct: 160 RML--------------------------------DMGFIHDIRRVLTKLPVKRQ----- 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|260854088|ref|YP_003227979.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
11368]
gi|415785215|ref|ZP_11492829.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli EPECa14]
gi|417295208|ref|ZP_12082464.1| ATP-dependent RNA helicase RhlE [Escherichia coli 900105 (10e)]
gi|419207940|ref|ZP_13751063.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC8C]
gi|419214487|ref|ZP_13757510.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC8D]
gi|419253551|ref|ZP_13796090.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC10A]
gi|419259612|ref|ZP_13802056.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC10B]
gi|419265751|ref|ZP_13808132.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC10C]
gi|419271293|ref|ZP_13813617.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC10D]
gi|419879319|ref|ZP_14400758.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H11 str.
CVM9534]
gi|419886119|ref|ZP_14406771.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H11 str.
CVM9545]
gi|419903986|ref|ZP_14422997.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CVM9942]
gi|419910328|ref|ZP_14428852.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CVM10026]
gi|420112198|ref|ZP_14622003.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H11 str.
CVM9553]
gi|420117106|ref|ZP_14626474.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CVM10021]
gi|420123029|ref|ZP_14631931.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CVM10030]
gi|420129457|ref|ZP_14637989.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CVM10224]
gi|420135205|ref|ZP_14643297.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CVM9952]
gi|424746487|ref|ZP_18174725.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CFSAN001629]
gi|424762635|ref|ZP_18190136.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H11 str.
CFSAN001630]
gi|425377700|ref|ZP_18762068.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1865]
gi|257752737|dbj|BAI24239.1| RNA helicase RhlE [Escherichia coli O26:H11 str. 11368]
gi|323155682|gb|EFZ41853.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli EPECa14]
gi|378061114|gb|EHW23300.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC8C]
gi|378067249|gb|EHW29374.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC8D]
gi|378105091|gb|EHW66738.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC10A]
gi|378114392|gb|EHW75948.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC10B]
gi|378117330|gb|EHW78846.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC10C]
gi|378120824|gb|EHW82286.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC10D]
gi|386261571|gb|EIJ17036.1| ATP-dependent RNA helicase RhlE [Escherichia coli 900105 (10e)]
gi|388332252|gb|EIK98931.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H11 str.
CVM9534]
gi|388347103|gb|EIL12797.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H11 str.
CVM9545]
gi|388368577|gb|EIL32204.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CVM9942]
gi|388371735|gb|EIL35193.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CVM10026]
gi|394382613|gb|EJE60242.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CVM10224]
gi|394397074|gb|EJE73380.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H11 str.
CVM9553]
gi|394402533|gb|EJE78247.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CVM10021]
gi|394417988|gb|EJE91696.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CVM10030]
gi|394420435|gb|EJE93966.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CVM9952]
gi|408308877|gb|EKJ26102.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1865]
gi|421940874|gb|EKT98310.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H11 str.
CFSAN001630]
gi|421948130|gb|EKU05171.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CFSAN001629]
Length = 454
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 125/429 (29%), Positives = 197/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR + K +
Sbjct: 160 RML--------------------------------DMGFIHDIRRVLTKLPAKRQ----- 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|218699169|ref|YP_002406798.1| ATP-dependent RNA helicase RhlE [Escherichia coli IAI39]
gi|386623197|ref|YP_006142925.1| ATP-dependent RNA helicase [Escherichia coli O7:K1 str. CE10]
gi|218369155|emb|CAR16910.1| RNA helicase [Escherichia coli IAI39]
gi|349736935|gb|AEQ11641.1| ATP-dependent RNA helicase [Escherichia coli O7:K1 str. CE10]
Length = 453
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 126/429 (29%), Positives = 196/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 160 RML--------------------------------DMGFIHDIRRV-----LTKLPAKRQ 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKNLAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|157155652|ref|YP_001461987.1| ATP-dependent RNA helicase RhlE [Escherichia coli E24377A]
gi|193064450|ref|ZP_03045531.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli E22]
gi|194428200|ref|ZP_03060743.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli B171]
gi|260843040|ref|YP_003220818.1| RNA helicase RhlE [Escherichia coli O103:H2 str. 12009]
gi|293433058|ref|ZP_06661486.1| ATP-dependent RNA helicase RhlE [Escherichia coli B088]
gi|300824257|ref|ZP_07104374.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 119-7]
gi|331676532|ref|ZP_08377228.1| ATP-dependent RNA helicase RhlE [Escherichia coli H591]
gi|332282359|ref|ZP_08394772.1| ATP-dependent RNA helicase RhlE [Shigella sp. D9]
gi|415803124|ref|ZP_11500296.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli E128010]
gi|415827804|ref|ZP_11514573.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli OK1357]
gi|416345038|ref|ZP_11678681.1| ATP-dependent RNA helicase RhlE [Escherichia coli EC4100B]
gi|417144495|ref|ZP_11986301.1| ATP-dependent RNA helicase RhlE [Escherichia coli 1.2264]
gi|417161484|ref|ZP_11997720.1| ATP-dependent RNA helicase RhlE [Escherichia coli 99.0741]
gi|417177330|ref|ZP_12006811.1| ATP-dependent RNA helicase RhlE [Escherichia coli 3.2608]
gi|417180033|ref|ZP_12007741.1| ATP-dependent RNA helicase RhlE [Escherichia coli 93.0624]
gi|417223820|ref|ZP_12027111.1| ATP-dependent RNA helicase RhlE [Escherichia coli 96.154]
gi|417242638|ref|ZP_12037855.1| ATP-dependent RNA helicase RhlE [Escherichia coli 9.0111]
gi|417254717|ref|ZP_12046468.1| ATP-dependent RNA helicase RhlE [Escherichia coli 4.0967]
gi|417267555|ref|ZP_12054916.1| ATP-dependent RNA helicase RhlE [Escherichia coli 3.3884]
gi|417601131|ref|ZP_12251713.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_94C]
gi|417606902|ref|ZP_12257426.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_DG131-3]
gi|417622131|ref|ZP_12272456.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_H.1.8]
gi|417665935|ref|ZP_12315497.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_O31]
gi|419225574|ref|ZP_13768459.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC9A]
gi|419236763|ref|ZP_13779507.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC9C]
gi|419242295|ref|ZP_13784942.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC9D]
gi|419247811|ref|ZP_13790418.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC9E]
gi|419277008|ref|ZP_13819269.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC10E]
gi|419282779|ref|ZP_13824991.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC10F]
gi|419288330|ref|ZP_13830440.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC11A]
gi|419293682|ref|ZP_13835737.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC11B]
gi|419299089|ref|ZP_13841102.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC11C]
gi|419305383|ref|ZP_13847293.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC11D]
gi|419310421|ref|ZP_13852292.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC11E]
gi|419315707|ref|ZP_13857531.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC12A]
gi|419321653|ref|ZP_13863385.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC12B]
gi|419327782|ref|ZP_13869410.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC12C]
gi|419333303|ref|ZP_13874859.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC12D]
gi|419338624|ref|ZP_13880109.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC12E]
gi|419374460|ref|ZP_13915511.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC14B]
gi|419379737|ref|ZP_13920712.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC14C]
gi|419384945|ref|ZP_13925844.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC14D]
gi|419804719|ref|ZP_14329872.1| ATP-dependent RNA helicase RhlE [Escherichia coli AI27]
gi|419870728|ref|ZP_14392820.1| ATP-dependent RNA helicase RhlE [Escherichia coli O103:H2 str.
CVM9450]
gi|419928780|ref|ZP_14446487.1| ATP-dependent RNA helicase RhlE [Escherichia coli 541-1]
gi|419952234|ref|ZP_14468408.1| ATP-dependent RNA helicase RhlE [Escherichia coli CUMT8]
gi|420390263|ref|ZP_14889531.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli EPEC C342-62]
gi|422775387|ref|ZP_16829043.1| DEAD/DEAH box helicase [Escherichia coli H120]
gi|423708718|ref|ZP_17683096.1| ATP-dependent RNA helicase rhlE [Escherichia coli B799]
gi|425423250|ref|ZP_18804418.1| ATP-dependent RNA helicase rhlE [Escherichia coli 0.1288]
gi|432375905|ref|ZP_19618913.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE12]
gi|432480171|ref|ZP_19722133.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE210]
gi|432812897|ref|ZP_20046742.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE101]
gi|432830770|ref|ZP_20064353.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE135]
gi|432833878|ref|ZP_20067420.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE136]
gi|432966894|ref|ZP_20155810.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE203]
gi|157077682|gb|ABV17390.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Escherichia coli
E24377A]
gi|192928912|gb|EDV82525.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli E22]
gi|194413760|gb|EDX30039.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli B171]
gi|257758187|dbj|BAI29684.1| RNA helicase RhlE [Escherichia coli O103:H2 str. 12009]
gi|291323877|gb|EFE63299.1| ATP-dependent RNA helicase RhlE [Escherichia coli B088]
gi|300523231|gb|EFK44300.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 119-7]
gi|320198986|gb|EFW73583.1| ATP-dependent RNA helicase RhlE [Escherichia coli EC4100B]
gi|323159727|gb|EFZ45705.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli E128010]
gi|323185047|gb|EFZ70413.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli OK1357]
gi|323947045|gb|EGB43058.1| DEAD/DEAH box helicase [Escherichia coli H120]
gi|331075221|gb|EGI46519.1| ATP-dependent RNA helicase RhlE [Escherichia coli H591]
gi|332104711|gb|EGJ08057.1| ATP-dependent RNA helicase RhlE [Shigella sp. D9]
gi|345353137|gb|EGW85373.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_94C]
gi|345364307|gb|EGW96433.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_DG131-3]
gi|345385199|gb|EGX15046.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_H.1.8]
gi|378080476|gb|EHW42438.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC9A]
gi|378088482|gb|EHW50335.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC9C]
gi|378093646|gb|EHW55450.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC9D]
gi|378099976|gb|EHW61673.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC9E]
gi|378132177|gb|EHW93529.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC10E]
gi|378135208|gb|EHW96520.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC11A]
gi|378138246|gb|EHW99504.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC10F]
gi|378145181|gb|EHX06347.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC11B]
gi|378151862|gb|EHX12964.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC11D]
gi|378155043|gb|EHX16103.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC11C]
gi|378160136|gb|EHX21133.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC11E]
gi|378173088|gb|EHX33932.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC12B]
gi|378173799|gb|EHX34632.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC12A]
gi|378175241|gb|EHX36059.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC12C]
gi|378189533|gb|EHX50125.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC12D]
gi|378193147|gb|EHX53688.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC12E]
gi|378224523|gb|EHX84725.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC14B]
gi|378232924|gb|EHX93018.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC14C]
gi|378236537|gb|EHX96583.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC14D]
gi|384472327|gb|EIE56385.1| ATP-dependent RNA helicase RhlE [Escherichia coli AI27]
gi|385707439|gb|EIG44470.1| ATP-dependent RNA helicase rhlE [Escherichia coli B799]
gi|386164378|gb|EIH26164.1| ATP-dependent RNA helicase RhlE [Escherichia coli 1.2264]
gi|386174020|gb|EIH46021.1| ATP-dependent RNA helicase RhlE [Escherichia coli 99.0741]
gi|386175879|gb|EIH53361.1| ATP-dependent RNA helicase RhlE [Escherichia coli 3.2608]
gi|386185388|gb|EIH68114.1| ATP-dependent RNA helicase RhlE [Escherichia coli 93.0624]
gi|386198868|gb|EIH97859.1| ATP-dependent RNA helicase RhlE [Escherichia coli 96.154]
gi|386211626|gb|EII22082.1| ATP-dependent RNA helicase RhlE [Escherichia coli 9.0111]
gi|386214999|gb|EII31496.1| ATP-dependent RNA helicase RhlE [Escherichia coli 4.0967]
gi|386229913|gb|EII57268.1| ATP-dependent RNA helicase RhlE [Escherichia coli 3.3884]
gi|388338976|gb|EIL05370.1| ATP-dependent RNA helicase RhlE [Escherichia coli O103:H2 str.
CVM9450]
gi|388405146|gb|EIL65583.1| ATP-dependent RNA helicase RhlE [Escherichia coli 541-1]
gi|388412943|gb|EIL72969.1| ATP-dependent RNA helicase RhlE [Escherichia coli CUMT8]
gi|391314587|gb|EIQ72137.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli EPEC C342-62]
gi|397786486|gb|EJK97322.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_O31]
gi|408343465|gb|EKJ57866.1| ATP-dependent RNA helicase rhlE [Escherichia coli 0.1288]
gi|430900533|gb|ELC22551.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE12]
gi|431009653|gb|ELD24267.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE210]
gi|431356103|gb|ELG42794.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE101]
gi|431379611|gb|ELG64540.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE135]
gi|431386759|gb|ELG70712.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE136]
gi|431472866|gb|ELH52700.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE203]
Length = 454
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 125/429 (29%), Positives = 197/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR + K +
Sbjct: 160 RML--------------------------------DMGFIHDIRRVLTKLPAKRQ----- 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|340975938|gb|EGS23053.1| hypothetical protein CTHT_0015380 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 852
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 118/360 (32%), Positives = 167/360 (46%), Gaps = 74/360 (20%)
Query: 14 WMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLC 73
W+ SP+ V+ P + L + P L++ G F VQ AV + + D+
Sbjct: 272 WLASPIRVNPEMKQPWNEL-GISPESARVLESKGFKDAFAVQTAVLPLLLPSADRQGDVV 330
Query: 74 INSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVG 133
+ +PTGSGKTLSY LP+V LS + LRAL+VLPTRDL QV+ A A ++ G
Sbjct: 331 VAAPTGSGKTLSYVLPMVHDLSRGRITRLRALIVLPTRDLVHQVQLACETCAAAFAVNGG 390
Query: 134 ------LAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ----------------- 170
A+G DE + ++ + YDPE + L+
Sbjct: 391 KRVKIATAMGNRPFKDEQTVIMGEEQ-----KYDPEGFEKYLRKQDSFVDLEESDEEDDE 445
Query: 171 -----------------SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA 213
S VDIL+ TPGRL++HI T GFTL+++ +L+VDE D+LL +
Sbjct: 446 LHIGRTLPLPYHVISHVSKVDILICTPGRLVEHITKTPGFTLDYVRWLIVDEADKLLAQD 505
Query: 214 YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273
+Q WL TV + ST P A T + GV K++LS
Sbjct: 506 FQQWLATVTE-----------KLSTAKPGAR-DFPTSNKSGVR------------KVILS 541
Query: 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYK---LPERLESYKL-ICESKLKPLYLVALLQS 329
AT+T+D + L L L P + TR LP L + + + E+ LKPLYLV LL+S
Sbjct: 542 ATMTRDLSLLNGLKLSRPQLVLVEGTRAGEQVLPSTLSEFAIKVREASLKPLYLVDLLRS 601
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 56/74 (75%)
Query: 374 RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 433
R++TL+AF +GK+++LV+SD ++RG+D+ + +VVNYD P +Y+HR GRTARAG+ G
Sbjct: 720 RTRTLRAFTQGKLRILVASDLVSRGIDLLNLEHVVNYDVPISETSYVHRVGRTARAGRKG 779
Query: 434 RCFTLLHKDEVKRF 447
+TL+ E +RF
Sbjct: 780 CAWTLVEFSEGRRF 793
>gi|424075736|ref|ZP_17813076.1| ATP-dependent RNA helicase rhlE [Escherichia coli FDA505]
gi|424094910|ref|ZP_17830656.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK1985]
gi|424101330|ref|ZP_17836476.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK1990]
gi|424132527|ref|ZP_17865318.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA10]
gi|424139068|ref|ZP_17871353.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA14]
gi|424454056|ref|ZP_17905582.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA33]
gi|424466839|ref|ZP_17917018.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA41]
gi|424567552|ref|ZP_18008456.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4448]
gi|425142383|ref|ZP_18542670.1| ATP-dependent RNA helicase rhlE [Escherichia coli 10.0869]
gi|425184632|ref|ZP_18582246.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK1997]
gi|425309735|ref|ZP_18699189.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1735]
gi|425321723|ref|ZP_18710381.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1737]
gi|425346380|ref|ZP_18733171.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1849]
gi|428945401|ref|ZP_19018016.1| ATP-dependent RNA helicase rhlE [Escherichia coli 88.1467]
gi|429024709|ref|ZP_19091099.1| ATP-dependent RNA helicase rhlE [Escherichia coli 96.0427]
gi|444968033|ref|ZP_21285499.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.1793]
gi|390652270|gb|EIN30494.1| ATP-dependent RNA helicase rhlE [Escherichia coli FDA505]
gi|390672006|gb|EIN48371.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK1990]
gi|390672509|gb|EIN48807.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK1985]
gi|390707718|gb|EIN81057.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA10]
gi|390710520|gb|EIN83538.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA14]
gi|390754145|gb|EIO23767.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA33]
gi|390775273|gb|EIO43340.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA41]
gi|390913428|gb|EIP72014.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4448]
gi|408115758|gb|EKH47123.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK1997]
gi|408237515|gb|EKI60370.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1735]
gi|408252100|gb|EKI73797.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1737]
gi|408278182|gb|EKI97944.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1849]
gi|408603387|gb|EKK77028.1| ATP-dependent RNA helicase rhlE [Escherichia coli 10.0869]
gi|427215678|gb|EKV84846.1| ATP-dependent RNA helicase rhlE [Escherichia coli 88.1467]
gi|427291116|gb|EKW54560.1| ATP-dependent RNA helicase rhlE [Escherichia coli 96.0427]
gi|444585228|gb|ELV60806.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.1793]
Length = 450
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 126/429 (29%), Positives = 196/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 3 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 58
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 59 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 103
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 104 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 154
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 155 RML--------------------------------DMGFIHDIRRV-----LTKLPAKRQ 177
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 178 -NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 235
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 236 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 292
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 293 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 352
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 353 RDIEKLLKK 361
>gi|417539031|ref|ZP_12191433.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
enterica serovar Wandsworth str. A4-580]
gi|353665295|gb|EHD03472.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
enterica serovar Wandsworth str. A4-580]
Length = 453
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 121/429 (28%), Positives = 197/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LNPDILRAIAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 -----SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
+ R +RAL++ PTR+LA Q+ + A + + + + G
Sbjct: 64 ITHQPHAKGRRPVRALILTPTRELAAQIGENVRAYSKYLNIRSLVVFG------------ 111
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 112 -------GVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR + K +
Sbjct: 160 RML--------------------------------DMGFIHDIRRVLAKLPAKRQ----- 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ L +PL + R E++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLRNPLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GQGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|415771440|ref|ZP_11485299.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 3431]
gi|417617233|ref|ZP_12267663.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli G58-1]
gi|419400716|ref|ZP_13941447.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC15C]
gi|425114155|ref|ZP_18515976.1| ATP-dependent RNA helicase rhlE [Escherichia coli 8.0566]
gi|425282199|ref|ZP_18673305.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW00353]
gi|315619798|gb|EFV00317.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 3431]
gi|345380405|gb|EGX12304.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli G58-1]
gi|378251021|gb|EHY10922.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC15C]
gi|408205467|gb|EKI30348.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW00353]
gi|408571867|gb|EKK47794.1| ATP-dependent RNA helicase rhlE [Escherichia coli 8.0566]
Length = 449
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 126/429 (29%), Positives = 196/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 3 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 58
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 59 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 103
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 104 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 154
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 155 RML--------------------------------DMGFIHDIRRV-----LTKLPAKRQ 177
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 178 -NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 235
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 236 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 292
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 293 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 352
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 353 RDIEKLLKK 361
>gi|422377585|ref|ZP_16457824.1| ATP-dependent RNA helicase RhlE, partial [Escherichia coli MS 60-1]
gi|324011108|gb|EGB80327.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 60-1]
Length = 438
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 126/429 (29%), Positives = 196/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 160 RML--------------------------------DMGFIHDIRRV-----LTKLPAKRQ 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|301646226|ref|ZP_07246122.1| ATP-dependent RNA helicase RhlE, partial [Escherichia coli MS
146-1]
gi|301075563|gb|EFK90369.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 146-1]
Length = 446
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 126/429 (29%), Positives = 196/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 160 RML--------------------------------DMGFIHDIRRV-----LTKLPAKRQ 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|301024520|ref|ZP_07188196.1| ATP-dependent RNA helicase RhlE, partial [Escherichia coli MS
196-1]
gi|299880373|gb|EFI88584.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 196-1]
Length = 438
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 125/429 (29%), Positives = 197/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR + K +
Sbjct: 160 RML--------------------------------DMGFIHDIRRVLTKLPAKRQ----- 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|422782366|ref|ZP_16835151.1| DEAD/DEAH box helicase [Escherichia coli TW10509]
gi|323976817|gb|EGB71905.1| DEAD/DEAH box helicase [Escherichia coli TW10509]
Length = 454
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 126/429 (29%), Positives = 196/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 160 RML--------------------------------DMGFIHDIRRV-----LTKLPAKRQ 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKNLAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|146310946|ref|YP_001176020.1| ATP-dependent RNA helicase RhlE [Enterobacter sp. 638]
gi|145317822|gb|ABP59969.1| DEAD/DEAH box helicase domain protein [Enterobacter sp. 638]
Length = 462
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 126/429 (29%), Positives = 198/429 (46%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LNPEILRAVAEQGYLEPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQRL 63
Query: 95 SN-----RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
+ R +RAL++ PTR+LA Q+ G V + S +I L+
Sbjct: 64 VQNEPHAKGRRPVRALILTPTRELAAQI---------------GENVREYSRYLDIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+S VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRSGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 160 RML--------------------------------DMGFIHDIRRV-----LAKLPAKRQ 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + + LA+ L +PL + R E++ Y + K K L ++
Sbjct: 183 -NLLFSATFSDEIKGLAEKLLRNPLEIEVAR-RNTASEQVSQYVHFVDKKRKRELLSQMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GEGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK-- 445
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE K
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 446 -RFKKLLQK 453
++LL+K
Sbjct: 358 HDIERLLKK 366
>gi|417595796|ref|ZP_12246456.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 3030-1]
gi|345358931|gb|EGW91111.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 3030-1]
Length = 454
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 125/429 (29%), Positives = 197/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR + K +
Sbjct: 160 RML--------------------------------DMGFIHDIRRVLTKLPAKRQ----- 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|115397383|ref|XP_001214283.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114192474|gb|EAU34174.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 853
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 119/341 (34%), Positives = 167/341 (48%), Gaps = 69/341 (20%)
Query: 2 EEAKKKSMPVLP-WM----RSPVDV-SLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQ 55
E+ +K + LP W+ R+P D + F D ++H L L+N G F VQ
Sbjct: 214 EQQEKPTYSSLPSWLANPFRTPADERTKFADLGIEH------DLLKNLENNGYKEAFAVQ 267
Query: 56 VAVWQETI-GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114
AV + GP DLCI++ TGSGKTLSY LP+V L +R L+V+PTR+L
Sbjct: 268 SAVIPLLLKGPRNHPGDLCISAATGSGKTLSYVLPLVTALEQAPAPRMRGLIVVPTRELV 327
Query: 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPE----------- 163
Q ++ A GL V AVG +I DE L++ ++ Y PE
Sbjct: 328 KQAREACELCAAGSGLRVASAVGNVAIKDEQRSLMRVDQV-----YGPEISRQRQHTKMT 382
Query: 164 --------------DV----------LQELQSAVDILVATPGRLMDHINATRGFTLEHLC 199
DV + + + VDIL+ TPGRL+DHI T+GFTL+HL
Sbjct: 383 DQDWTNFNLQEYVADVADRGDCLPGYVHKAEPNVDILICTPGRLVDHIRYTKGFTLKHLE 442
Query: 200 YLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTI-RRCGVERG 258
+LV+DE DRLL E++Q W+ V+ S + + SD AFGS I G+
Sbjct: 443 WLVIDEADRLLNESFQEWVDVVMT---SLDSRKDSD-------AFGSSGQIMADLGLPIQ 492
Query: 259 FKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET 299
K+ PR K++LSAT+T+D KL L L +P + G +
Sbjct: 493 TKE---PR--KVILSATMTRDVTKLNSLRLLNPKLVLVGSS 528
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 55/81 (67%)
Query: 369 QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 428
+ S KTL A+R GKI +++++D +RG+D+ +N+VVNYD P + TY+HR GRTAR
Sbjct: 716 NKSSASRKTLTAYRRGKISIIIATDRASRGLDLPSLNHVVNYDVPPSVTTYVHRVGRTAR 775
Query: 429 AGQLGRCFTLLHKDEVKRFKK 449
AG+ G +TL+ E + F K
Sbjct: 776 AGREGSAWTLVAHREGRWFVK 796
>gi|300947123|ref|ZP_07161337.1| DEAD/DEAH box helicase, partial [Escherichia coli MS 116-1]
gi|300453201|gb|EFK16821.1| DEAD/DEAH box helicase [Escherichia coli MS 116-1]
Length = 433
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 126/429 (29%), Positives = 196/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 160 RML--------------------------------DMGFIHDIRRV-----LTKLPAKRQ 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|300957744|ref|ZP_07169931.1| ATP-dependent RNA helicase RhlE, partial [Escherichia coli MS
175-1]
gi|300315560|gb|EFJ65344.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 175-1]
Length = 439
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 125/429 (29%), Positives = 197/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR + K +
Sbjct: 160 RML--------------------------------DMGFIHDIRRVLTKLPAKRQ----- 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|423119382|ref|ZP_17107066.1| ATP-dependent RNA helicase rhlE [Klebsiella oxytoca 10-5246]
gi|376398561|gb|EHT11185.1| ATP-dependent RNA helicase rhlE [Klebsiella oxytoca 10-5246]
Length = 466
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 127/429 (29%), Positives = 197/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LNPDILRAVAEQGYLEPTPIQ----QQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 -----SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
+ R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 IQKEPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+S VD+LVATPGRL+D H NA +L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRSGVDVLVATPGRLLDLEHQNAV---SLDKVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 160 RML--------------------------------DMGFIHDIRRV-----LAKLPAKRQ 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R E++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GEGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGGIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK-- 445
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE K
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 446 -RFKKLLQK 453
++LL+K
Sbjct: 358 HDIERLLKK 366
>gi|422358967|ref|ZP_16439616.1| ATP-dependent RNA helicase RhlE, partial [Escherichia coli MS
110-3]
gi|315287179|gb|EFU46591.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 110-3]
Length = 439
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 126/429 (29%), Positives = 196/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 160 RML--------------------------------DMGFIHDIRRV-----LTKLPAKRQ 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|422368931|ref|ZP_16449335.1| ATP-dependent RNA helicase RhlE, partial [Escherichia coli MS 16-3]
gi|315299273|gb|EFU58525.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 16-3]
Length = 446
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 125/429 (29%), Positives = 197/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR + K +
Sbjct: 160 RML--------------------------------DMGFIHDIRRVLTKLPAKRQ----- 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|170768930|ref|ZP_02903383.1| putative ATP-dependent RNA helicase RhlE [Escherichia albertii
TW07627]
gi|170122002|gb|EDS90933.1| putative ATP-dependent RNA helicase RhlE [Escherichia albertii
TW07627]
Length = 447
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 126/429 (29%), Positives = 196/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 160 RML--------------------------------DMGFIHDIRRV-----LTKLPAKRQ 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKNLAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSYMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|88857449|ref|ZP_01132092.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain;
DEAD-box protein family protein [Pseudoalteromonas
tunicata D2]
gi|88820646|gb|EAR30458.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain;
DEAD-box protein family protein [Pseudoalteromonas
tunicata D2]
Length = 435
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 117/412 (28%), Positives = 195/412 (47%), Gaps = 74/412 (17%)
Query: 37 PRLKVALQNMGISSLFPVQ-VAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 95
P + A+ G + L PVQ +A+ G D+ N+ TG+GKT ++ALPI+Q L
Sbjct: 10 PEILRAIDECGYTELSPVQRLAIPHVRRG-----HDVLANAQTGTGKTAAFALPILQKLI 64
Query: 96 N----RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
+ R +ALV+ PTR+LA Q+ + F + +SV G
Sbjct: 65 DTPTPRVASNAKALVLAPTRELAEQIANSFERYGKYLDISVAAIFG-------------- 110
Query: 152 PKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 211
G+ + + + +L++ DI+VATPGRL++HI +L ++ +LV+DE DR+L
Sbjct: 111 -----GVSHKGQAI--KLKAGADIIVATPGRLLEHIQMC-NVSLSNVSFLVLDEADRMLD 162
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
++ + L + N+ R T L SA YP +K
Sbjct: 163 ---MGFINDIKMLMAAVNDER----QTLLFSA-------------------TYPSSMKQ- 195
Query: 272 LSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLG 331
SA++ + P K+ Q + T Y + ER ++ +L+ E L+
Sbjct: 196 FSASVLKQP-KIVQATKDNSTAETVQHVVYPVEERRKN-ELLSE----------LIGRKN 243
Query: 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVS 391
+ +VF + E+ + LN FG I G + Q R + L+ F+EGK++VLV+
Sbjct: 244 WHQVLVFVNMKETASSVVEELNQFG---ISAAVCHGDKTQGARRRALREFKEGKVRVLVA 300
Query: 392 SDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443
++ RG+D+ G+ V+N D P + Y+HR GRT RAG +G+ + + ++E
Sbjct: 301 TEVAARGLDIVGLERVINVDLPFLAEDYVHRIGRTGRAGNIGQAVSFVSREE 352
>gi|419364204|ref|ZP_13905383.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC13E]
gi|378218012|gb|EHX78286.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC13E]
Length = 440
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 125/429 (29%), Positives = 197/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 3 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 58
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 59 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 103
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 104 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 154
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR + K +
Sbjct: 155 RML--------------------------------DMGFIHDIRRVLTKLPAKRQ----- 177
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 178 -NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 235
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 236 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 292
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 293 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 352
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 353 RDIEKLLKK 361
>gi|350530261|ref|ZP_08909202.1| ATP-dependent RNA helicase SrmB [Vibrio rotiferianus DAT722]
Length = 407
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 135/425 (31%), Positives = 198/425 (46%), Gaps = 78/425 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LD L A++ MG +Q E I L RD+ ++PTG+GKT ++ LP +Q L
Sbjct: 10 LDQNLLEAIEEMGYERPTKIQA----EAIPQALDGRDILASAPTGTGKTAAFVLPALQYL 65
Query: 95 SN---RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
+ R R L++ PTR+LA+Q+ D A+A L++ G
Sbjct: 66 QDFPRRKPGPARILILTPTRELAMQIADQARALAKNTKLNIFTITG-------------- 111
Query: 152 PKLEAGICY-DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 210
G+ Y + D+L Q DI+VATPGRL ++I+A R F + +LV+DE DR+L
Sbjct: 112 -----GVQYQEHADILATTQ---DIVVATPGRLREYIDAER-FDCRAIEWLVLDEADRML 162
Query: 211 REAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270
+ PTV +L+ NE R+ T L SA T+ GVE GF
Sbjct: 163 DMGFA---PTVDRLS---NECRWR-KQTLLFSA-----TLEGKGVE-GF----------- 198
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL 330
+A L +P A++D PL R K+ + E KL L + Q+
Sbjct: 199 --TADLLNEP---AEIDAKSPL-----RERKKIAQWYHRAD-DAEHKLALLKHIITEQA- 246
Query: 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 390
E+ IVF + E RL L +I G Q R+ + FREG + VL+
Sbjct: 247 --ERTIVFLKTRE---RLAELRAQLESAQIPCSWIQGEMPQDRRNNAIARFREGTVNVLL 301
Query: 391 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK------DEV 444
++D RG+D+ V++V+NYD P Y+HR GRTARAG+ G +++ D V
Sbjct: 302 ATDVAARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDRV 361
Query: 445 KRFKK 449
R+ K
Sbjct: 362 ARYVK 366
>gi|386618245|ref|YP_006137825.1| ATP-dependent RNA helicase [Escherichia coli NA114]
gi|387828776|ref|YP_003348713.1| putative ATP-dependent RNA helicase [Escherichia coli SE15]
gi|432420873|ref|ZP_19663428.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE178]
gi|432499009|ref|ZP_19740785.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE216]
gi|432557779|ref|ZP_19794468.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE49]
gi|432693549|ref|ZP_19928760.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE162]
gi|432709596|ref|ZP_19944661.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE6]
gi|432918019|ref|ZP_20122424.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE173]
gi|432925309|ref|ZP_20127338.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE175]
gi|432980270|ref|ZP_20169048.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE211]
gi|433095692|ref|ZP_20281903.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE139]
gi|433104902|ref|ZP_20290920.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE148]
gi|281177933|dbj|BAI54263.1| putative ATP-dependent RNA helicase [Escherichia coli SE15]
gi|333968746|gb|AEG35551.1| ATP-dependent RNA helicase [Escherichia coli NA114]
gi|430946490|gb|ELC66413.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE178]
gi|431031680|gb|ELD44418.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE216]
gi|431093857|gb|ELD99513.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE49]
gi|431236215|gb|ELF31428.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE162]
gi|431251298|gb|ELF45315.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE6]
gi|431446200|gb|ELH26949.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE173]
gi|431448030|gb|ELH28748.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE175]
gi|431493165|gb|ELH72759.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE211]
gi|431618950|gb|ELI87878.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE139]
gi|431633658|gb|ELJ01921.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE148]
Length = 453
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 126/429 (29%), Positives = 196/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 160 RML--------------------------------DMGFIHDIRRV-----LTKLPAKRQ 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|269959614|ref|ZP_06173995.1| Superfamily II DNA and RNA helicase [Vibrio harveyi 1DA3]
gi|424047884|ref|ZP_17785440.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HENC-03]
gi|269835672|gb|EEZ89750.1| Superfamily II DNA and RNA helicase [Vibrio harveyi 1DA3]
gi|408883194|gb|EKM21981.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HENC-03]
Length = 407
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 135/425 (31%), Positives = 198/425 (46%), Gaps = 78/425 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LD L A++ MG +Q E I L RD+ ++PTG+GKT ++ LP +Q L
Sbjct: 10 LDQNLLEAIEEMGYERPTKIQA----EAIPQALDGRDILASAPTGTGKTAAFVLPALQYL 65
Query: 95 SN---RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
+ R R L++ PTR+LA+QV D A+A L++ G
Sbjct: 66 QDFPRRKPGPARILILTPTRELAMQVADQARALAKNTKLNIFTITG-------------- 111
Query: 152 PKLEAGICY-DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 210
G+ Y + D+L Q DI+VATPGRL ++I+A R F + +L++DE DR+L
Sbjct: 112 -----GVQYQEHADILATTQ---DIVVATPGRLREYIDAER-FDCRAIEWLILDEADRML 162
Query: 211 REAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270
+ PTV +L+ NE R+ T L SA T+ GVE GF
Sbjct: 163 DMGFA---PTVDRLS---NECRWR-KQTLLFSA-----TLEGKGVE-GF----------- 198
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL 330
+A L +P A++D PL R K+ + E KL L + Q+
Sbjct: 199 --TADLLNEP---AEIDAKSPL-----RERKKIAQWYHRAD-DAEHKLALLKHIITEQA- 246
Query: 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 390
E+ IVF + E RL L +I G Q R+ + FREG + VL+
Sbjct: 247 --ERTIVFLKTRE---RLAELRAQLESAQIPCSWIQGEMPQDRRNNAIARFREGTVNVLL 301
Query: 391 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK------DEV 444
++D RG+D+ V++V+NYD P Y+HR GRTARAG+ G +++ D V
Sbjct: 302 ATDVAARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDRV 361
Query: 445 KRFKK 449
R+ K
Sbjct: 362 ARYVK 366
>gi|117622979|ref|YP_851892.1| ATP-dependent RNA helicase RhlE [Escherichia coli APEC O1]
gi|115512103|gb|ABJ00178.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli APEC O1]
Length = 453
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 126/429 (29%), Positives = 196/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 160 RML--------------------------------DMGFIHDIRRV-----LTKLPAKRQ 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|443316249|ref|ZP_21045701.1| DNA/RNA helicase, superfamily II [Leptolyngbya sp. PCC 6406]
gi|442784157|gb|ELR94045.1| DNA/RNA helicase, superfamily II [Leptolyngbya sp. PCC 6406]
Length = 438
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 116/420 (27%), Positives = 193/420 (45%), Gaps = 77/420 (18%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSN---- 96
A+++ G S+ P+Q P + E +DL ++ TG+GKT + LPI+ L++
Sbjct: 15 AVEDQGYSTPTPIQAKAI-----PLVLEGKDLMASAQTGTGKTAGFTLPILHKLASAGRG 69
Query: 97 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 156
+ R RALV+ PTR+LA QV + A V L + G
Sbjct: 70 QGRRPPRALVLTPTRELAAQVAESIATYGKYVPLRTAVVFG------------------- 110
Query: 157 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 216
G+ P+ + +LQ VD+LVATPGRL+DH+ R L + LV+DE DR+L
Sbjct: 111 GVKIQPQ--IHKLQRGVDVLVATPGRLLDHVG-QRTVDLSQVEVLVLDEADRML------ 161
Query: 217 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 276
G + IRR + P R M SAT
Sbjct: 162 --------------------------DMGFIHDIRRL-----LNELPAERQTLM-FSATF 189
Query: 277 TQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCI 336
+ + KLA L P+ + R +++ + + K L ++ ++ +
Sbjct: 190 SNEIKKLADDILRDPVLVEVA-ARNSTADKISQVVHPVDRQRKRELLSYMIGQHNWQQVL 248
Query: 337 VFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT 396
VFT + +RL L G +K G + Q R++ L+ F++G ++VLV++D
Sbjct: 249 VFTRTKHGANRLAEQLERDG---LKTAAIHGNKSQGARTRALQDFKKGAVRVLVATDIAA 305
Query: 397 RGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQK 453
RG+D++ + +VVN++ P + Y+HR GRT RAG G+ +L+ +E ++ ++LL++
Sbjct: 306 RGLDIDHLPHVVNFELPNVSEDYVHRIGRTGRAGNTGQAVSLVSSEEYPLLRSIERLLKQ 365
>gi|419911645|ref|ZP_14430115.1| ATP-dependent RNA helicase RhlE [Escherichia coli KD1]
gi|388393221|gb|EIL54610.1| ATP-dependent RNA helicase RhlE [Escherichia coli KD1]
Length = 452
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 126/429 (29%), Positives = 196/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 160 RML--------------------------------DMGFIHDIRRV-----LTKLPAKRQ 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|422353494|ref|ZP_16434247.1| ATP-dependent RNA helicase RhlE, partial [Escherichia coli MS
117-3]
gi|324018526|gb|EGB87745.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 117-3]
Length = 442
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 126/429 (29%), Positives = 196/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 160 RML--------------------------------DMGFIHDIRRV-----LTKLPAKRQ 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|422765321|ref|ZP_16819048.1| DEAD/DEAH box helicase [Escherichia coli E1520]
gi|323938152|gb|EGB34412.1| DEAD/DEAH box helicase [Escherichia coli E1520]
Length = 454
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 126/429 (29%), Positives = 196/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 160 RML--------------------------------DMGFIHDIRRV-----LTKLPAKRQ 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSNDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|225450401|ref|XP_002278318.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic
[Vitis vinifera]
gi|296089875|emb|CBI39694.3| unnamed protein product [Vitis vinifera]
Length = 764
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 122/427 (28%), Positives = 191/427 (44%), Gaps = 81/427 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L PRL +L+ GI+ LFP+Q AV + P L RDL + TG+GKTL++ +PI++ L
Sbjct: 123 LPPRLVESLEQRGITHLFPIQRAV----LVPALEGRDLIARAKTGTGKTLAFGIPIIKRL 178
Query: 95 SN---------RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEI 145
S R+ R R LV+ PTR+LA QV+ AP LS G
Sbjct: 179 SEDDEKRTSQRRSGRLPRVLVLAPTRELAKQVEKEIKESAPY--LSTVCVYG-------- 228
Query: 146 SELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 205
G+ Y + L VD++V TPGR++D I L + LV+DE
Sbjct: 229 -----------GVSYITQQ--NALSRGVDVVVGTPGRIIDLIKGN-SLKLGEVQNLVLDE 274
Query: 206 TDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYP 265
D++L ++ + +L+ S+ ++
Sbjct: 275 ADQMLAVGFEEDVEVILEKLPSERQS---------------------------------- 300
Query: 266 RLVKMVLSATLTQDPNKLAQLDLHHPLFLT-TGETRYKLPERLESYKLICESKLKPLYLV 324
M+ SAT+ KLA+ L +PL + G+ KL E ++ Y + + K L
Sbjct: 301 ----MLFSATMPAWVKKLARKYLDNPLTIDLVGDHDEKLAEGIKLYAIPTTATSKRTILS 356
Query: 325 ALLQSLGE-EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 383
L+ + K IVFT + + L + I + G Q R +TL FR+
Sbjct: 357 DLITVYAKGGKTIVFTQTKRDADEVSMALTN----SIASEALHGDISQHQRERTLNGFRQ 412
Query: 384 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443
GK VLV++D RG+D+ V+ +++Y+ P +T++HR+GRT RAG+ G + +
Sbjct: 413 GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 472
Query: 444 VKRFKKL 450
+ K L
Sbjct: 473 RRTVKSL 479
>gi|432945988|ref|ZP_20141726.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE196]
gi|433042299|ref|ZP_20229823.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE117]
gi|431462321|gb|ELH42535.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE196]
gi|431559502|gb|ELI33055.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE117]
Length = 454
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 126/429 (29%), Positives = 196/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 160 RML--------------------------------DMGFIHDIRRV-----LTKLPAKRQ 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|425304306|ref|ZP_18694089.1| ATP-dependent RNA helicase rhlE [Escherichia coli N1]
gi|408231316|gb|EKI54593.1| ATP-dependent RNA helicase rhlE [Escherichia coli N1]
Length = 454
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 126/429 (29%), Positives = 196/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 160 RML--------------------------------DMGFIHDIRRV-----LTKLPAKRQ 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|301020713|ref|ZP_07184781.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 69-1]
gi|419917866|ref|ZP_14436087.1| ATP-dependent RNA helicase RhlE [Escherichia coli KD2]
gi|300398524|gb|EFJ82062.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 69-1]
gi|388392900|gb|EIL54301.1| ATP-dependent RNA helicase RhlE [Escherichia coli KD2]
Length = 452
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 126/429 (29%), Positives = 196/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 160 RML--------------------------------DMGFIHDIRRV-----LTKLPAKRQ 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|387606349|ref|YP_006095205.1| putative ATP-dependent RNA helicase [Escherichia coli 042]
gi|284920649|emb|CBG33712.1| putative ATP-dependent RNA helicase [Escherichia coli 042]
Length = 454
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 126/429 (29%), Positives = 196/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 160 RML--------------------------------DMGFIHDIRRV-----LTKLPAKRQ 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKNLAEKLLHNPLEIEVSR-RNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|432769642|ref|ZP_20003995.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE50]
gi|432960359|ref|ZP_20150490.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE202]
gi|433062038|ref|ZP_20248995.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE125]
gi|431317724|gb|ELG05500.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE50]
gi|431478046|gb|ELH57805.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE202]
gi|431586954|gb|ELI58336.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE125]
Length = 454
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 126/429 (29%), Positives = 196/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 160 RML--------------------------------DMGFIHDIRRV-----LTKLPAKRQ 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKHKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|157160272|ref|YP_001457590.1| ATP-dependent RNA helicase RhlE [Escherichia coli HS]
gi|157065952|gb|ABV05207.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli HS]
Length = 454
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 125/429 (29%), Positives = 197/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR + K +
Sbjct: 160 RML--------------------------------DMGFIHDIRRVLTKLPAKRQ----- 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLHNPLEIKVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|82776130|ref|YP_402477.1| ATP-dependent RNA helicase RhlE [Shigella dysenteriae Sd197]
gi|81240278|gb|ABB60988.1| putative ATP-dependent RNA helicase [Shigella dysenteriae Sd197]
Length = 454
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 125/429 (29%), Positives = 197/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR + K +
Sbjct: 160 RML--------------------------------DMGFIHDIRRVLTKLPAKRQ----- 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|215485885|ref|YP_002328316.1| ATP-dependent RNA helicase RhlE [Escherichia coli O127:H6 str.
E2348/69]
gi|312969182|ref|ZP_07783389.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 2362-75]
gi|417754655|ref|ZP_12402746.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC2B]
gi|418995949|ref|ZP_13543556.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC1A]
gi|419001015|ref|ZP_13548567.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC1B]
gi|419006513|ref|ZP_13553966.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC1C]
gi|419012350|ref|ZP_13559714.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC1D]
gi|419017347|ref|ZP_13564666.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC1E]
gi|419022935|ref|ZP_13570176.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC2A]
gi|419027809|ref|ZP_13575002.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC2C]
gi|419033704|ref|ZP_13580800.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC2D]
gi|419038617|ref|ZP_13585671.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC2E]
gi|215263957|emb|CAS08297.1| RNA helicase [Escherichia coli O127:H6 str. E2348/69]
gi|312286584|gb|EFR14497.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 2362-75]
gi|377847939|gb|EHU12936.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC1A]
gi|377849589|gb|EHU14558.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC1C]
gi|377852750|gb|EHU17664.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC1B]
gi|377861973|gb|EHU26787.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC1D]
gi|377865803|gb|EHU30593.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC1E]
gi|377867945|gb|EHU32694.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC2A]
gi|377878098|gb|EHU42686.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC2B]
gi|377882881|gb|EHU47412.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC2D]
gi|377884294|gb|EHU48807.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC2C]
gi|377897502|gb|EHU61881.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC2E]
Length = 453
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 125/429 (29%), Positives = 197/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQYL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR + K +
Sbjct: 160 RML--------------------------------DMGFIHDIRRVLTKLPAKRQ----- 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|432873837|ref|ZP_20093105.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE147]
gi|431404432|gb|ELG87683.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE147]
Length = 454
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 126/429 (29%), Positives = 196/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 160 RML--------------------------------DMGFIHDIRRV-----LTKLPAKRQ 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|74311340|ref|YP_309759.1| ATP-dependent RNA helicase RhlE [Shigella sonnei Ss046]
gi|383177421|ref|YP_005455426.1| ATP-dependent RNA helicase RhlE [Shigella sonnei 53G]
gi|414575042|ref|ZP_11432248.1| ATP-dependent RNA helicase rhlE [Shigella sonnei 3233-85]
gi|415850222|ref|ZP_11527142.1| putative ATP-dependent RNA helicase rhlE [Shigella sonnei 53G]
gi|418263069|ref|ZP_12884253.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Shigella sonnei str. Moseley]
gi|420357517|ref|ZP_14858525.1| ATP-dependent RNA helicase rhlE [Shigella sonnei 3226-85]
gi|420362435|ref|ZP_14863351.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Shigella sonnei 4822-66]
gi|73854817|gb|AAZ87524.1| putative ATP-dependent RNA helicase [Shigella sonnei Ss046]
gi|323165715|gb|EFZ51501.1| putative ATP-dependent RNA helicase rhlE [Shigella sonnei 53G]
gi|391287551|gb|EIQ46075.1| ATP-dependent RNA helicase rhlE [Shigella sonnei 3226-85]
gi|391287991|gb|EIQ46500.1| ATP-dependent RNA helicase rhlE [Shigella sonnei 3233-85]
gi|391296008|gb|EIQ54124.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Shigella sonnei 4822-66]
gi|397902862|gb|EJL19172.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Shigella sonnei str. Moseley]
Length = 454
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 125/429 (29%), Positives = 197/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR + K +
Sbjct: 160 RML--------------------------------DMGFIHDIRRVLTKLPAKRQ----- 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|392404056|ref|YP_006440668.1| DEAD/DEAH box helicase domain protein [Turneriella parva DSM 21527]
gi|390612010|gb|AFM13162.1| DEAD/DEAH box helicase domain protein [Turneriella parva DSM 21527]
Length = 424
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 110/400 (27%), Positives = 186/400 (46%), Gaps = 68/400 (17%)
Query: 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111
F + +E I L +D+ + TG+GKT ++ LP+++ LS + R +RALVV PTR
Sbjct: 22 FKAPTPIQKEAIPHALAGKDILGLAQTGTGKTAAFVLPMLEKLSAQPARKIRALVVAPTR 81
Query: 112 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 171
+LA Q+ V + L G +S+ ++ EL K
Sbjct: 82 ELAEQIHQVIVTLGKDTRLQSMTIYGGASMNRQLGELRK--------------------- 120
Query: 172 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN 231
VDI+VA PGRL+DH+ + TL+ + LV+DE D++ +LP + Q+ +
Sbjct: 121 GVDIVVACPGRLLDHLQ-RKSLTLDAVETLVLDEADQMFD---MGFLPAIKQIVAKLPQK 176
Query: 232 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 291
R + M+ SAT+ ++ KL+ L P
Sbjct: 177 RQT-----------------------------------MLFSATMPEEIRKLSAQILREP 201
Query: 292 LFLTTGETRYKLPERLESYKLI-CESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 350
+ + + P S+ L +LK L+ LL+ G++ +VFT ++ H+
Sbjct: 202 VKVELA----RGPVATISHALYPVTHELKTPLLLHLLKDAGDQPILVFT---KTKHKATR 254
Query: 351 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 410
L + + G Q+ R L F+ GK Q+LV++D RG+DV +++++NY
Sbjct: 255 LADQLAKAGFTTASLQGNLSQNRRDSALAGFKSGKYQILVATDIAARGIDVNNISHIINY 314
Query: 411 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
D PA +TYIHR GRTARA + G +T + ++ ++ +++
Sbjct: 315 DIPASSETYIHRIGRTARATKSGDAYTFVTSEDNRQVREI 354
>gi|432615625|ref|ZP_19851752.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE75]
gi|431156800|gb|ELE57466.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE75]
Length = 453
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 125/429 (29%), Positives = 197/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR + K +
Sbjct: 160 RML--------------------------------DMGFIHDIRRVLTKLPAKRQ----- 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|15800548|ref|NP_286560.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
EDL933]
gi|15830129|ref|NP_308902.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
Sakai]
gi|168752016|ref|ZP_02777038.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4113]
gi|168756582|ref|ZP_02781589.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4401]
gi|168764299|ref|ZP_02789306.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4501]
gi|168767298|ref|ZP_02792305.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4486]
gi|168777223|ref|ZP_02802230.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4196]
gi|168779341|ref|ZP_02804348.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4076]
gi|168787011|ref|ZP_02812018.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC869]
gi|168799929|ref|ZP_02824936.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC508]
gi|195936837|ref|ZP_03082219.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
EC4024]
gi|208808862|ref|ZP_03251199.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4206]
gi|208814983|ref|ZP_03256162.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4045]
gi|208822342|ref|ZP_03262661.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4042]
gi|209396359|ref|YP_002269466.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
EC4115]
gi|217324654|ref|ZP_03440738.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. TW14588]
gi|254791991|ref|YP_003076828.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
TW14359]
gi|261225444|ref|ZP_05939725.1| RNA helicase [Escherichia coli O157:H7 str. FRIK2000]
gi|261258587|ref|ZP_05951120.1| RNA helicase [Escherichia coli O157:H7 str. FRIK966]
gi|291281794|ref|YP_003498612.1| ATP-dependent RNA helicase RhlE [Escherichia coli O55:H7 str.
CB9615]
gi|293414075|ref|ZP_06656724.1| ATP-dependent RNA helicase RhlE [Escherichia coli B185]
gi|387505903|ref|YP_006158159.1| ATP-dependent RNA helicase RhlE [Escherichia coli O55:H7 str.
RM12579]
gi|387881409|ref|YP_006311711.1| ATP-dependent RNA helicase RhlE [Escherichia coli Xuzhou21]
gi|416309552|ref|ZP_11655924.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
1044]
gi|416317432|ref|ZP_11660473.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
EC1212]
gi|416332189|ref|ZP_11670268.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
1125]
gi|416781898|ref|ZP_11877367.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
G5101]
gi|416793131|ref|ZP_11882292.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H- str.
493-89]
gi|416804396|ref|ZP_11887151.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H- str. H
2687]
gi|416815421|ref|ZP_11891857.1| ATP-dependent RNA helicase RhlE [Escherichia coli O55:H7 str.
3256-97]
gi|416825253|ref|ZP_11896441.1| ATP-dependent RNA helicase RhlE [Escherichia coli O55:H7 str. USDA
5905]
gi|416836098|ref|ZP_11901713.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
LSU-61]
gi|419044083|ref|ZP_13591054.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC3A]
gi|419049436|ref|ZP_13596352.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC3B]
gi|419055518|ref|ZP_13602371.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC3C]
gi|419061090|ref|ZP_13607869.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC3D]
gi|419067186|ref|ZP_13613661.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC3E]
gi|419074099|ref|ZP_13619667.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC3F]
gi|419079198|ref|ZP_13624680.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC4A]
gi|419084835|ref|ZP_13630244.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC4B]
gi|419091085|ref|ZP_13636402.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC4C]
gi|419096771|ref|ZP_13642013.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC4D]
gi|419102575|ref|ZP_13647740.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC4E]
gi|419107936|ref|ZP_13653045.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC4F]
gi|419113710|ref|ZP_13658740.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC5A]
gi|419119348|ref|ZP_13664326.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC5B]
gi|419125059|ref|ZP_13669956.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC5C]
gi|419130595|ref|ZP_13675442.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC5D]
gi|419135320|ref|ZP_13680126.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC5E]
gi|420268096|ref|ZP_14770500.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA22]
gi|420273875|ref|ZP_14776207.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA40]
gi|420279271|ref|ZP_14781536.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW06591]
gi|420285269|ref|ZP_14787484.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW10246]
gi|420290983|ref|ZP_14793146.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW11039]
gi|420296582|ref|ZP_14798675.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW09109]
gi|420302895|ref|ZP_14804921.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW10119]
gi|420308059|ref|ZP_14810031.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1738]
gi|420313779|ref|ZP_14815684.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1734]
gi|421811066|ref|ZP_16246865.1| ATP-dependent RNA helicase rhlE [Escherichia coli 8.0416]
gi|421817148|ref|ZP_16252703.1| ATP-dependent RNA helicase rhlE [Escherichia coli 10.0821]
gi|421822551|ref|ZP_16257988.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK920]
gi|421829288|ref|ZP_16264615.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA7]
gi|423664723|ref|ZP_17639886.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA31]
gi|424082066|ref|ZP_17818917.1| ATP-dependent RNA helicase rhlE [Escherichia coli FDA517]
gi|424088699|ref|ZP_17824945.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK1996]
gi|424108130|ref|ZP_17842696.1| ATP-dependent RNA helicase rhlE [Escherichia coli 93-001]
gi|424114123|ref|ZP_17848259.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA3]
gi|424120181|ref|ZP_17853874.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA5]
gi|424126420|ref|ZP_17859615.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA9]
gi|424145511|ref|ZP_17877271.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA15]
gi|424151642|ref|ZP_17882889.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA24]
gi|424190135|ref|ZP_17888328.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA25]
gi|424271705|ref|ZP_17894236.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA28]
gi|424425322|ref|ZP_17899959.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA32]
gi|424460367|ref|ZP_17911281.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA39]
gi|424473404|ref|ZP_17923064.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA42]
gi|424479335|ref|ZP_17928574.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW07945]
gi|424485404|ref|ZP_17934260.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW09098]
gi|424491576|ref|ZP_17939919.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW09195]
gi|424498624|ref|ZP_17945886.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4203]
gi|424504858|ref|ZP_17951619.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4196]
gi|424511106|ref|ZP_17957321.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW14313]
gi|424518644|ref|ZP_17963068.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW14301]
gi|424524503|ref|ZP_17968517.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4421]
gi|424530707|ref|ZP_17974322.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4422]
gi|424536684|ref|ZP_17979934.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4013]
gi|424542601|ref|ZP_17985401.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4402]
gi|424548920|ref|ZP_17991111.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4439]
gi|424555167|ref|ZP_17996880.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4436]
gi|424561523|ref|ZP_18002803.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4437]
gi|424573744|ref|ZP_18014155.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1845]
gi|424579693|ref|ZP_18019614.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1863]
gi|425096364|ref|ZP_18499377.1| ATP-dependent RNA helicase rhlE [Escherichia coli 3.4870]
gi|425102508|ref|ZP_18505148.1| ATP-dependent RNA helicase rhlE [Escherichia coli 5.2239]
gi|425108313|ref|ZP_18510551.1| ATP-dependent RNA helicase rhlE [Escherichia coli 6.0172]
gi|425124149|ref|ZP_18525707.1| ATP-dependent RNA helicase rhlE [Escherichia coli 8.0586]
gi|425130179|ref|ZP_18531268.1| ATP-dependent RNA helicase rhlE [Escherichia coli 8.2524]
gi|425136543|ref|ZP_18537257.1| ATP-dependent RNA helicase rhlE [Escherichia coli 10.0833]
gi|425148733|ref|ZP_18548610.1| ATP-dependent RNA helicase rhlE [Escherichia coli 88.0221]
gi|425154337|ref|ZP_18553879.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA34]
gi|425160784|ref|ZP_18559955.1| ATP-dependent RNA helicase rhlE [Escherichia coli FDA506]
gi|425166310|ref|ZP_18565111.1| ATP-dependent RNA helicase rhlE [Escherichia coli FDA507]
gi|425172598|ref|ZP_18570987.1| ATP-dependent RNA helicase rhlE [Escherichia coli FDA504]
gi|425178488|ref|ZP_18576530.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK1999]
gi|425191392|ref|ZP_18588508.1| ATP-dependent RNA helicase rhlE [Escherichia coli NE1487]
gi|425197701|ref|ZP_18594343.1| ATP-dependent RNA helicase rhlE [Escherichia coli NE037]
gi|425204368|ref|ZP_18600488.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK2001]
gi|425210121|ref|ZP_18605847.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA4]
gi|425216172|ref|ZP_18611477.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA23]
gi|425222753|ref|ZP_18617595.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA49]
gi|425228981|ref|ZP_18623364.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA45]
gi|425235284|ref|ZP_18629238.1| ATP-dependent RNA helicase rhlE [Escherichia coli TT12B]
gi|425241281|ref|ZP_18634909.1| ATP-dependent RNA helicase rhlE [Escherichia coli MA6]
gi|425247409|ref|ZP_18640604.1| ATP-dependent RNA helicase rhlE [Escherichia coli 5905]
gi|425253144|ref|ZP_18646003.1| ATP-dependent RNA helicase rhlE [Escherichia coli CB7326]
gi|425259420|ref|ZP_18651779.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC96038]
gi|425265567|ref|ZP_18657468.1| ATP-dependent RNA helicase rhlE [Escherichia coli 5412]
gi|425292999|ref|ZP_18683570.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA38]
gi|425315656|ref|ZP_18704719.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1736]
gi|425327915|ref|ZP_18716122.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1846]
gi|425334099|ref|ZP_18721803.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1847]
gi|425340513|ref|ZP_18727738.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1848]
gi|425352617|ref|ZP_18738981.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1850]
gi|425358604|ref|ZP_18744561.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1856]
gi|425364714|ref|ZP_18750242.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1862]
gi|425371162|ref|ZP_18756108.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1864]
gi|425383958|ref|ZP_18767821.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1866]
gi|425390648|ref|ZP_18774088.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1868]
gi|425396767|ref|ZP_18779796.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1869]
gi|425402754|ref|ZP_18785345.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1870]
gi|425409293|ref|ZP_18791431.1| ATP-dependent RNA helicase rhlE [Escherichia coli NE098]
gi|425415574|ref|ZP_18797194.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK523]
gi|425426707|ref|ZP_18807746.1| ATP-dependent RNA helicase rhlE [Escherichia coli 0.1304]
gi|428951536|ref|ZP_19023643.1| ATP-dependent RNA helicase rhlE [Escherichia coli 88.1042]
gi|428957401|ref|ZP_19029068.1| ATP-dependent RNA helicase rhlE [Escherichia coli 89.0511]
gi|428963723|ref|ZP_19034884.1| ATP-dependent RNA helicase rhlE [Escherichia coli 90.0091]
gi|428969936|ref|ZP_19040549.1| ATP-dependent RNA helicase rhlE [Escherichia coli 90.0039]
gi|428976421|ref|ZP_19046575.1| ATP-dependent RNA helicase rhlE [Escherichia coli 90.2281]
gi|428982032|ref|ZP_19051749.1| ATP-dependent RNA helicase rhlE [Escherichia coli 93.0055]
gi|428988330|ref|ZP_19057597.1| ATP-dependent RNA helicase rhlE [Escherichia coli 93.0056]
gi|428994131|ref|ZP_19063022.1| ATP-dependent RNA helicase rhlE [Escherichia coli 94.0618]
gi|429000267|ref|ZP_19068753.1| ATP-dependent RNA helicase rhlE [Escherichia coli 95.0183]
gi|429006446|ref|ZP_19074338.1| ATP-dependent RNA helicase rhlE [Escherichia coli 95.1288]
gi|429012785|ref|ZP_19080022.1| ATP-dependent RNA helicase rhlE [Escherichia coli 95.0943]
gi|429019038|ref|ZP_19085803.1| ATP-dependent RNA helicase rhlE [Escherichia coli 96.0428]
gi|429031042|ref|ZP_19096893.1| ATP-dependent RNA helicase rhlE [Escherichia coli 96.0939]
gi|429037193|ref|ZP_19102617.1| ATP-dependent RNA helicase rhlE [Escherichia coli 96.0932]
gi|429043163|ref|ZP_19108143.1| ATP-dependent RNA helicase rhlE [Escherichia coli 96.0107]
gi|429048882|ref|ZP_19113535.1| ATP-dependent RNA helicase rhlE [Escherichia coli 97.0003]
gi|429054278|ref|ZP_19118758.1| ATP-dependent RNA helicase rhlE [Escherichia coli 97.1742]
gi|429059931|ref|ZP_19124063.1| ATP-dependent RNA helicase rhlE [Escherichia coli 97.0007]
gi|429065437|ref|ZP_19129277.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0672]
gi|429071962|ref|ZP_19135308.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0678]
gi|429077288|ref|ZP_19140496.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0713]
gi|429824529|ref|ZP_19355999.1| ATP-dependent RNA helicase rhlE [Escherichia coli 96.0109]
gi|429830882|ref|ZP_19361698.1| ATP-dependent RNA helicase rhlE [Escherichia coli 97.0010]
gi|444923221|ref|ZP_21242900.1| ATP-dependent RNA helicase rhlE [Escherichia coli 09BKT078844]
gi|444929524|ref|ZP_21248665.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0814]
gi|444934814|ref|ZP_21253742.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0815]
gi|444940413|ref|ZP_21259049.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0816]
gi|444945962|ref|ZP_21264373.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0839]
gi|444951558|ref|ZP_21269771.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0848]
gi|444957033|ref|ZP_21275021.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.1753]
gi|444962292|ref|ZP_21280031.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.1775]
gi|444973536|ref|ZP_21290805.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.1805]
gi|444979084|ref|ZP_21296069.1| ATP-dependent RNA helicase rhlE [Escherichia coli ATCC 700728]
gi|444984373|ref|ZP_21301233.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA11]
gi|444989619|ref|ZP_21306350.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA19]
gi|444994964|ref|ZP_21311552.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA13]
gi|445000476|ref|ZP_21316930.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA2]
gi|445005935|ref|ZP_21322265.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA47]
gi|445011046|ref|ZP_21327230.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA48]
gi|445016880|ref|ZP_21332922.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA8]
gi|445022315|ref|ZP_21338229.1| ATP-dependent RNA helicase rhlE [Escherichia coli 7.1982]
gi|445027574|ref|ZP_21343342.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.1781]
gi|445033074|ref|ZP_21348687.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.1762]
gi|445038764|ref|ZP_21354226.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA35]
gi|445044065|ref|ZP_21359392.1| ATP-dependent RNA helicase rhlE [Escherichia coli 3.4880]
gi|445049558|ref|ZP_21364714.1| ATP-dependent RNA helicase rhlE [Escherichia coli 95.0083]
gi|445055210|ref|ZP_21370151.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0670]
gi|452970952|ref|ZP_21969179.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
EC4009]
gi|12513789|gb|AAG55168.1|AE005260_7 putative ATP-dependent RNA helicase [Escherichia coli O157:H7 str.
EDL933]
gi|13360334|dbj|BAB34298.1| putative ATP-dependent RNA helicase [Escherichia coli O157:H7 str.
Sakai]
gi|187767485|gb|EDU31329.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4196]
gi|188014049|gb|EDU52171.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4113]
gi|189002895|gb|EDU71881.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4076]
gi|189356291|gb|EDU74710.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4401]
gi|189363536|gb|EDU81955.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4486]
gi|189365692|gb|EDU84108.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4501]
gi|189373064|gb|EDU91480.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC869]
gi|189377707|gb|EDU96123.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC508]
gi|208728663|gb|EDZ78264.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4206]
gi|208731631|gb|EDZ80319.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4045]
gi|208737827|gb|EDZ85510.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4042]
gi|209157759|gb|ACI35192.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4115]
gi|209775908|gb|ACI86266.1| putative ATP-dependent RNA helicase [Escherichia coli]
gi|209775910|gb|ACI86267.1| putative ATP-dependent RNA helicase [Escherichia coli]
gi|209775912|gb|ACI86268.1| putative ATP-dependent RNA helicase [Escherichia coli]
gi|209775914|gb|ACI86269.1| putative ATP-dependent RNA helicase [Escherichia coli]
gi|209775916|gb|ACI86270.1| putative ATP-dependent RNA helicase [Escherichia coli]
gi|217320875|gb|EEC29299.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. TW14588]
gi|254591391|gb|ACT70752.1| RNA helicase [Escherichia coli O157:H7 str. TW14359]
gi|290761667|gb|ADD55628.1| ATP-dependent RNA helicase RhlE [Escherichia coli O55:H7 str.
CB9615]
gi|291434133|gb|EFF07106.1| ATP-dependent RNA helicase RhlE [Escherichia coli B185]
gi|320192728|gb|EFW67369.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
EC1212]
gi|320637659|gb|EFX07451.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
G5101]
gi|320642785|gb|EFX11986.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H- str.
493-89]
gi|320648241|gb|EFX16896.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H- str. H
2687]
gi|320654078|gb|EFX22146.1| ATP-dependent RNA helicase RhlE [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320659701|gb|EFX27257.1| ATP-dependent RNA helicase RhlE [Escherichia coli O55:H7 str. USDA
5905]
gi|320664171|gb|EFX31322.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
LSU-61]
gi|326338317|gb|EGD62146.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
1125]
gi|326346295|gb|EGD70033.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
1044]
gi|374357897|gb|AEZ39604.1| ATP-dependent RNA helicase RhlE [Escherichia coli O55:H7 str.
RM12579]
gi|377899702|gb|EHU64048.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC3A]
gi|377901498|gb|EHU65814.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC3B]
gi|377913110|gb|EHU77254.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC3C]
gi|377917176|gb|EHU81241.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC3D]
gi|377919854|gb|EHU83888.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC3E]
gi|377931075|gb|EHU94945.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC3F]
gi|377933305|gb|EHU97150.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC4A]
gi|377938207|gb|EHV01975.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC4B]
gi|377949244|gb|EHV12884.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC4C]
gi|377950209|gb|EHV13837.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC4D]
gi|377953743|gb|EHV17307.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC4E]
gi|377964410|gb|EHV27845.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC5A]
gi|377966303|gb|EHV29715.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC4F]
gi|377970991|gb|EHV34348.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC5B]
gi|377978988|gb|EHV42266.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC5C]
gi|377979166|gb|EHV42443.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC5D]
gi|377986469|gb|EHV49659.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC5E]
gi|386794867|gb|AFJ27901.1| ATP-dependent RNA helicase RhlE [Escherichia coli Xuzhou21]
gi|390649930|gb|EIN28402.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK1996]
gi|390651672|gb|EIN29942.1| ATP-dependent RNA helicase rhlE [Escherichia coli FDA517]
gi|390669056|gb|EIN45761.1| ATP-dependent RNA helicase rhlE [Escherichia coli 93-001]
gi|390687795|gb|EIN62940.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA3]
gi|390690684|gb|EIN65470.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA9]
gi|390691364|gb|EIN66112.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA5]
gi|390709283|gb|EIN82393.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA15]
gi|390719403|gb|EIN92128.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA22]
gi|390732457|gb|EIO04142.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA25]
gi|390732767|gb|EIO04441.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA24]
gi|390735327|gb|EIO06721.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA28]
gi|390751004|gb|EIO20976.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA31]
gi|390751421|gb|EIO21332.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA32]
gi|390761962|gb|EIO31232.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA40]
gi|390776912|gb|EIO44791.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA42]
gi|390781177|gb|EIO48862.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA39]
gi|390784981|gb|EIO52537.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW06591]
gi|390794132|gb|EIO61431.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW10246]
gi|390801014|gb|EIO68080.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW11039]
gi|390808163|gb|EIO75009.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW07945]
gi|390811320|gb|EIO78034.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW09109]
gi|390818720|gb|EIO85089.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW10119]
gi|390821664|gb|EIO87843.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW09098]
gi|390836280|gb|EIP00833.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4203]
gi|390838892|gb|EIP03069.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4196]
gi|390839808|gb|EIP03888.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW09195]
gi|390854827|gb|EIP17604.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW14301]
gi|390857889|gb|EIP20312.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW14313]
gi|390858020|gb|EIP20441.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4421]
gi|390870510|gb|EIP32011.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4422]
gi|390874956|gb|EIP36038.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4013]
gi|390884803|gb|EIP45069.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4402]
gi|390887323|gb|EIP47306.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4439]
gi|390893053|gb|EIP52621.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4436]
gi|390903454|gb|EIP62500.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1738]
gi|390908508|gb|EIP67331.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4437]
gi|390911273|gb|EIP69978.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1734]
gi|390924107|gb|EIP81909.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1863]
gi|390925816|gb|EIP83448.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1845]
gi|408071615|gb|EKH05950.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA7]
gi|408075733|gb|EKH09965.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK920]
gi|408085388|gb|EKH19012.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA34]
gi|408089225|gb|EKH22556.1| ATP-dependent RNA helicase rhlE [Escherichia coli FDA506]
gi|408094017|gb|EKH27062.1| ATP-dependent RNA helicase rhlE [Escherichia coli FDA507]
gi|408101056|gb|EKH33525.1| ATP-dependent RNA helicase rhlE [Escherichia coli FDA504]
gi|408109307|gb|EKH41234.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK1999]
gi|408121072|gb|EKH52036.1| ATP-dependent RNA helicase rhlE [Escherichia coli NE1487]
gi|408129264|gb|EKH59497.1| ATP-dependent RNA helicase rhlE [Escherichia coli NE037]
gi|408130964|gb|EKH61025.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK2001]
gi|408140235|gb|EKH69770.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA4]
gi|408149439|gb|EKH78117.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA23]
gi|408151260|gb|EKH79768.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA49]
gi|408156447|gb|EKH84649.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA45]
gi|408166156|gb|EKH93774.1| ATP-dependent RNA helicase rhlE [Escherichia coli TT12B]
gi|408170867|gb|EKH98017.1| ATP-dependent RNA helicase rhlE [Escherichia coli MA6]
gi|408172863|gb|EKH99915.1| ATP-dependent RNA helicase rhlE [Escherichia coli 5905]
gi|408186144|gb|EKI12251.1| ATP-dependent RNA helicase rhlE [Escherichia coli CB7326]
gi|408190165|gb|EKI15836.1| ATP-dependent RNA helicase rhlE [Escherichia coli 5412]
gi|408190455|gb|EKI16100.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC96038]
gi|408232112|gb|EKI55365.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA38]
gi|408248415|gb|EKI70464.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1736]
gi|408258389|gb|EKI79660.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1846]
gi|408267432|gb|EKI87892.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1847]
gi|408268914|gb|EKI89236.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1848]
gi|408283982|gb|EKJ03111.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1850]
gi|408286629|gb|EKJ05548.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1856]
gi|408299401|gb|EKJ17202.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1862]
gi|408299864|gb|EKJ17629.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1864]
gi|408315484|gb|EKJ31799.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1868]
gi|408315913|gb|EKJ32211.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1866]
gi|408330454|gb|EKJ45717.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1869]
gi|408335464|gb|EKJ50310.1| ATP-dependent RNA helicase rhlE [Escherichia coli NE098]
gi|408336989|gb|EKJ51735.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1870]
gi|408349709|gb|EKJ63631.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK523]
gi|408352595|gb|EKJ66139.1| ATP-dependent RNA helicase rhlE [Escherichia coli 0.1304]
gi|408557723|gb|EKK34146.1| ATP-dependent RNA helicase rhlE [Escherichia coli 5.2239]
gi|408557978|gb|EKK34393.1| ATP-dependent RNA helicase rhlE [Escherichia coli 3.4870]
gi|408558710|gb|EKK35069.1| ATP-dependent RNA helicase rhlE [Escherichia coli 6.0172]
gi|408584545|gb|EKK59545.1| ATP-dependent RNA helicase rhlE [Escherichia coli 8.0586]
gi|408588569|gb|EKK63141.1| ATP-dependent RNA helicase rhlE [Escherichia coli 8.2524]
gi|408589960|gb|EKK64459.1| ATP-dependent RNA helicase rhlE [Escherichia coli 10.0833]
gi|408605138|gb|EKK78667.1| ATP-dependent RNA helicase rhlE [Escherichia coli 8.0416]
gi|408606641|gb|EKK80067.1| ATP-dependent RNA helicase rhlE [Escherichia coli 88.0221]
gi|408616341|gb|EKK89496.1| ATP-dependent RNA helicase rhlE [Escherichia coli 10.0821]
gi|427213706|gb|EKV83106.1| ATP-dependent RNA helicase rhlE [Escherichia coli 88.1042]
gi|427215415|gb|EKV84597.1| ATP-dependent RNA helicase rhlE [Escherichia coli 89.0511]
gi|427232964|gb|EKW00763.1| ATP-dependent RNA helicase rhlE [Escherichia coli 90.2281]
gi|427233069|gb|EKW00855.1| ATP-dependent RNA helicase rhlE [Escherichia coli 90.0039]
gi|427234609|gb|EKW02286.1| ATP-dependent RNA helicase rhlE [Escherichia coli 90.0091]
gi|427250384|gb|EKW17055.1| ATP-dependent RNA helicase rhlE [Escherichia coli 93.0056]
gi|427251916|gb|EKW18438.1| ATP-dependent RNA helicase rhlE [Escherichia coli 93.0055]
gi|427253243|gb|EKW19685.1| ATP-dependent RNA helicase rhlE [Escherichia coli 94.0618]
gi|427269502|gb|EKW34459.1| ATP-dependent RNA helicase rhlE [Escherichia coli 95.0183]
gi|427269662|gb|EKW34614.1| ATP-dependent RNA helicase rhlE [Escherichia coli 95.0943]
gi|427274177|gb|EKW38837.1| ATP-dependent RNA helicase rhlE [Escherichia coli 95.1288]
gi|427285696|gb|EKW49635.1| ATP-dependent RNA helicase rhlE [Escherichia coli 96.0428]
gi|427292672|gb|EKW55999.1| ATP-dependent RNA helicase rhlE [Escherichia coli 96.0939]
gi|427304283|gb|EKW66940.1| ATP-dependent RNA helicase rhlE [Escherichia coli 97.0003]
gi|427305314|gb|EKW67909.1| ATP-dependent RNA helicase rhlE [Escherichia coli 96.0932]
gi|427309391|gb|EKW71709.1| ATP-dependent RNA helicase rhlE [Escherichia coli 96.0107]
gi|427320780|gb|EKW82514.1| ATP-dependent RNA helicase rhlE [Escherichia coli 97.1742]
gi|427321347|gb|EKW83041.1| ATP-dependent RNA helicase rhlE [Escherichia coli 97.0007]
gi|427333180|gb|EKW94290.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0713]
gi|427333393|gb|EKW94498.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0678]
gi|427336332|gb|EKW97310.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0672]
gi|429259288|gb|EKY42985.1| ATP-dependent RNA helicase rhlE [Escherichia coli 96.0109]
gi|429261458|gb|EKY44900.1| ATP-dependent RNA helicase rhlE [Escherichia coli 97.0010]
gi|444541943|gb|ELV21373.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0814]
gi|444549573|gb|ELV27810.1| ATP-dependent RNA helicase rhlE [Escherichia coli 09BKT078844]
gi|444551365|gb|ELV29325.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0815]
gi|444564136|gb|ELV41093.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0839]
gi|444566458|gb|ELV43291.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0816]
gi|444570293|gb|ELV46830.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0848]
gi|444581231|gb|ELV57093.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.1753]
gi|444584375|gb|ELV60020.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.1775]
gi|444598674|gb|ELV73587.1| ATP-dependent RNA helicase rhlE [Escherichia coli ATCC 700728]
gi|444599239|gb|ELV74129.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA11]
gi|444607041|gb|ELV81638.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.1805]
gi|444613400|gb|ELV87659.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA19]
gi|444613514|gb|ELV87772.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA13]
gi|444621829|gb|ELV95797.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA2]
gi|444631187|gb|ELW04791.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA48]
gi|444631451|gb|ELW05049.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA47]
gi|444636219|gb|ELW09621.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA8]
gi|444646598|gb|ELW19600.1| ATP-dependent RNA helicase rhlE [Escherichia coli 7.1982]
gi|444649268|gb|ELW22169.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.1781]
gi|444652588|gb|ELW25346.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.1762]
gi|444661713|gb|ELW34001.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA35]
gi|444665877|gb|ELW37971.1| ATP-dependent RNA helicase rhlE [Escherichia coli 3.4880]
gi|444671957|gb|ELW43717.1| ATP-dependent RNA helicase rhlE [Escherichia coli 95.0083]
gi|444674008|gb|ELW45592.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0670]
Length = 455
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 125/429 (29%), Positives = 197/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR + K +
Sbjct: 160 RML--------------------------------DMGFIHDIRRVLTKLPAKRQ----- 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|16128765|ref|NP_415318.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
MG1655]
gi|170020847|ref|YP_001725801.1| ATP-dependent RNA helicase RhlE [Escherichia coli ATCC 8739]
gi|170080456|ref|YP_001729776.1| ATP-dependent RNA helicase RhlE [Escherichia coli str. K-12 substr.
DH10B]
gi|188494973|ref|ZP_03002243.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli 53638]
gi|191166178|ref|ZP_03028012.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli B7A]
gi|194433132|ref|ZP_03065414.1| putative ATP-dependent RNA helicase RhlE [Shigella dysenteriae
1012]
gi|194438467|ref|ZP_03070557.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli 101-1]
gi|209918043|ref|YP_002292127.1| ATP-dependent RNA helicase RhlE [Escherichia coli SE11]
gi|218553381|ref|YP_002386294.1| ATP-dependent RNA helicase RhlE [Escherichia coli IAI1]
gi|218694271|ref|YP_002401938.1| ATP-dependent RNA helicase RhlE [Escherichia coli 55989]
gi|238900056|ref|YP_002925852.1| ATP-dependent RNA helicase RhlE [Escherichia coli BW2952]
gi|251784316|ref|YP_002998620.1| ATP-dependent RNA helicase [Escherichia coli BL21(DE3)]
gi|253774200|ref|YP_003037031.1| ATP-dependent RNA helicase RhlE [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254160874|ref|YP_003043982.1| ATP-dependent RNA helicase RhlE [Escherichia coli B str. REL606]
gi|254287688|ref|YP_003053436.1| RNA helicase [Escherichia coli BL21(DE3)]
gi|297521312|ref|ZP_06939698.1| ATP-dependent RNA helicase RhlE [Escherichia coli OP50]
gi|300816442|ref|ZP_07096664.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 107-1]
gi|300907124|ref|ZP_07124790.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 84-1]
gi|300920043|ref|ZP_07136502.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 115-1]
gi|300922820|ref|ZP_07138906.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 182-1]
gi|300929402|ref|ZP_07144871.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 187-1]
gi|301303551|ref|ZP_07209673.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 124-1]
gi|301327988|ref|ZP_07221153.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 78-1]
gi|307313793|ref|ZP_07593410.1| DEAD/DEAH box helicase domain protein [Escherichia coli W]
gi|309794255|ref|ZP_07688679.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 145-7]
gi|312970872|ref|ZP_07785051.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 1827-70]
gi|331641310|ref|ZP_08342445.1| ATP-dependent RNA helicase RhlE [Escherichia coli H736]
gi|378713847|ref|YP_005278740.1| DEAD/DEAH box helicase [Escherichia coli KO11FL]
gi|386279806|ref|ZP_10057482.1| ATP-dependent RNA helicase rhlE [Escherichia sp. 4_1_40B]
gi|386596367|ref|YP_006092767.1| DEAD/DEAH box helicase [Escherichia coli DH1]
gi|386608116|ref|YP_006123602.1| RNA helicase [Escherichia coli W]
gi|386612960|ref|YP_006132626.1| ATP-dependent RNA helicase RhlE [Escherichia coli UMNK88]
gi|386708558|ref|YP_006172279.1| ATP-dependent RNA helicase RhlE [Escherichia coli W]
gi|387611339|ref|YP_006114455.1| putative ATP-dependent RNA helicase [Escherichia coli ETEC H10407]
gi|387620524|ref|YP_006128151.1| ATP-dependent RNA helicase RhlE [Escherichia coli DH1]
gi|388476882|ref|YP_489070.1| RNA helicase [Escherichia coli str. K-12 substr. W3110]
gi|404374120|ref|ZP_10979340.1| ATP-dependent RNA helicase rhlE [Escherichia sp. 1_1_43]
gi|407468269|ref|YP_006785289.1| ATP-dependent RNA helicase RhlE [Escherichia coli O104:H4 str.
2009EL-2071]
gi|407482998|ref|YP_006780147.1| ATP-dependent RNA helicase RhlE [Escherichia coli O104:H4 str.
2011C-3493]
gi|410483550|ref|YP_006771096.1| ATP-dependent RNA helicase RhlE [Escherichia coli O104:H4 str.
2009EL-2050]
gi|415812962|ref|ZP_11504956.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli LT-68]
gi|415860752|ref|ZP_11534467.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 85-1]
gi|415875932|ref|ZP_11542552.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 79-10]
gi|416286848|ref|ZP_11648633.1| ATP-dependent RNA helicase RhlE [Shigella boydii ATCC 9905]
gi|417120582|ref|ZP_11970140.1| ATP-dependent RNA helicase RhlE [Escherichia coli 97.0246]
gi|417130674|ref|ZP_11975945.1| ATP-dependent RNA helicase RhlE [Escherichia coli 5.0588]
gi|417152584|ref|ZP_11991375.1| ATP-dependent RNA helicase RhlE [Escherichia coli 96.0497]
gi|417229406|ref|ZP_12030992.1| ATP-dependent RNA helicase RhlE [Escherichia coli 5.0959]
gi|417261194|ref|ZP_12048682.1| ATP-dependent RNA helicase RhlE [Escherichia coli 2.3916]
gi|417274502|ref|ZP_12061842.1| ATP-dependent RNA helicase RhlE [Escherichia coli 2.4168]
gi|417275438|ref|ZP_12062775.1| ATP-dependent RNA helicase RhlE [Escherichia coli 3.2303]
gi|417290025|ref|ZP_12077308.1| ATP-dependent RNA helicase RhlE [Escherichia coli B41]
gi|417580058|ref|ZP_12230876.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_B2F1]
gi|417611890|ref|ZP_12262362.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_EH250]
gi|417633416|ref|ZP_12283635.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_S1191]
gi|417638120|ref|ZP_12288287.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli TX1999]
gi|417672819|ref|ZP_12322278.1| putative ATP-dependent RNA helicase rhlE [Shigella dysenteriae
155-74]
gi|417831928|ref|ZP_12478449.1| ATP-dependent RNA helicase RhlE [Escherichia coli O104:H4 str.
01-09591]
gi|417864079|ref|ZP_12509126.1| hypothetical protein C22711_1012 [Escherichia coli O104:H4 str.
C227-11]
gi|417945085|ref|ZP_12588322.1| ATP-dependent RNA helicase RhlE [Escherichia coli XH140A]
gi|417975121|ref|ZP_12615921.1| ATP-dependent RNA helicase RhlE [Escherichia coli XH001]
gi|418042874|ref|ZP_12681057.1| ATP-dependent RNA helicase RhlE [Escherichia coli W26]
gi|418301699|ref|ZP_12913493.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli UMNF18]
gi|418958870|ref|ZP_13510779.1| DEAD/DEAH box helicase domain protein [Escherichia coli J53]
gi|419141314|ref|ZP_13686068.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC6A]
gi|419146912|ref|ZP_13691603.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC6B]
gi|419152706|ref|ZP_13697290.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC6C]
gi|419158127|ref|ZP_13702644.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC6D]
gi|419163060|ref|ZP_13707536.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC6E]
gi|419168783|ref|ZP_13713177.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC7A]
gi|419174163|ref|ZP_13718016.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC7B]
gi|419179764|ref|ZP_13723387.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC7C]
gi|419185324|ref|ZP_13728846.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC7D]
gi|419190518|ref|ZP_13733985.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC7E]
gi|419369058|ref|ZP_13910186.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC14A]
gi|419390192|ref|ZP_13931029.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC15A]
gi|419395363|ref|ZP_13936146.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC15B]
gi|419405890|ref|ZP_13946592.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC15D]
gi|419411382|ref|ZP_13952053.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC15E]
gi|419809588|ref|ZP_14334473.1| ATP-dependent RNA helicase RhlE [Escherichia coli O32:H37 str. P4]
gi|419925807|ref|ZP_14443635.1| ATP-dependent RNA helicase RhlE [Escherichia coli 541-15]
gi|419941037|ref|ZP_14457748.1| ATP-dependent RNA helicase RhlE [Escherichia coli 75]
gi|420347950|ref|ZP_14849344.1| ATP-dependent RNA helicase rhlE [Shigella boydii 965-58]
gi|420384419|ref|ZP_14883805.1| ATP-dependent RNA helicase rhlE [Escherichia coli EPECa12]
gi|421776878|ref|ZP_16213479.1| ATP-dependent RNA helicase RhlE [Escherichia coli AD30]
gi|422769987|ref|ZP_16823678.1| DEAD/DEAH box helicase [Escherichia coli E482]
gi|422785387|ref|ZP_16838126.1| DEAD/DEAH box helicase [Escherichia coli H489]
gi|422791573|ref|ZP_16844276.1| DEAD/DEAH box helicase [Escherichia coli TA007]
gi|422819824|ref|ZP_16868034.1| ATP-dependent RNA helicase rhlE [Escherichia coli M919]
gi|422959077|ref|ZP_16971008.1| ATP-dependent RNA helicase rhlE [Escherichia coli H494]
gi|422991531|ref|ZP_16982302.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
C227-11]
gi|422993473|ref|ZP_16984237.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
C236-11]
gi|422998684|ref|ZP_16989440.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
09-7901]
gi|423007145|ref|ZP_16997888.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
04-8351]
gi|423008791|ref|ZP_16999529.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-3677]
gi|423022979|ref|ZP_17013682.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4404]
gi|423028131|ref|ZP_17018824.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4522]
gi|423033965|ref|ZP_17024649.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4623]
gi|423036831|ref|ZP_17027505.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4632 C1]
gi|423041950|ref|ZP_17032617.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4632 C2]
gi|423048640|ref|ZP_17039297.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4632 C3]
gi|423052222|ref|ZP_17041030.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4632 C4]
gi|423059188|ref|ZP_17047984.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4632 C5]
gi|423701599|ref|ZP_17676058.1| ATP-dependent RNA helicase rhlE [Escherichia coli H730]
gi|425118864|ref|ZP_18520586.1| ATP-dependent RNA helicase rhlE [Escherichia coli 8.0569]
gi|425271545|ref|ZP_18663041.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW15901]
gi|427803888|ref|ZP_18970955.1| putative ATP-dependent RNA helicase [Escherichia coli chi7122]
gi|427808473|ref|ZP_18975538.1| putative ATP-dependent RNA helicase [Escherichia coli]
gi|429723022|ref|ZP_19257911.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429775196|ref|ZP_19307194.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02030]
gi|429780383|ref|ZP_19312333.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02033-1]
gi|429784436|ref|ZP_19316345.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02092]
gi|429789773|ref|ZP_19321645.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02093]
gi|429796003|ref|ZP_19327826.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02281]
gi|429801928|ref|ZP_19333703.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02318]
gi|429805560|ref|ZP_19337304.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02913]
gi|429811156|ref|ZP_19342855.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-03439]
gi|429816507|ref|ZP_19348163.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-04080]
gi|429821715|ref|ZP_19353327.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-03943]
gi|429907384|ref|ZP_19373352.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429911585|ref|ZP_19377541.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-9941]
gi|429917420|ref|ZP_19383360.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429922458|ref|ZP_19388379.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429923311|ref|ZP_19389227.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429932206|ref|ZP_19398100.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429933808|ref|ZP_19399698.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429939467|ref|ZP_19405341.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429947109|ref|ZP_19412964.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429949741|ref|ZP_19415589.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429958019|ref|ZP_19423848.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec12-0466]
gi|432368810|ref|ZP_19611911.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE10]
gi|432415781|ref|ZP_19658405.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE44]
gi|432484490|ref|ZP_19726410.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE212]
gi|432530124|ref|ZP_19767164.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE233]
gi|432533021|ref|ZP_19770012.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE234]
gi|432562727|ref|ZP_19799348.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE51]
gi|432579446|ref|ZP_19815877.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE56]
gi|432626403|ref|ZP_19862384.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE77]
gi|432636070|ref|ZP_19871952.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE81]
gi|432660024|ref|ZP_19895674.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE111]
gi|432669700|ref|ZP_19905241.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE119]
gi|432684601|ref|ZP_19919913.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE156]
gi|432690689|ref|ZP_19925928.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE161]
gi|432703361|ref|ZP_19938480.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE171]
gi|432736297|ref|ZP_19971068.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE42]
gi|432749230|ref|ZP_19983844.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE29]
gi|432764118|ref|ZP_19998566.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE48]
gi|432804897|ref|ZP_20038838.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE91]
gi|432880532|ref|ZP_20097067.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE154]
gi|432933336|ref|ZP_20133004.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE184]
gi|432954097|ref|ZP_20146216.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE197]
gi|433046931|ref|ZP_20234342.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE120]
gi|433091124|ref|ZP_20277420.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE138]
gi|433129147|ref|ZP_20314616.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE163]
gi|433133962|ref|ZP_20319336.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE166]
gi|433172626|ref|ZP_20357179.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE232]
gi|433192762|ref|ZP_20376776.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE90]
gi|442595224|ref|ZP_21013074.1| ATP-dependent RNA helicase RhlE [Escherichia coli O10:K5(L):H4 str.
ATCC 23506]
gi|442599480|ref|ZP_21017198.1| ATP-dependent RNA helicase RhlE [Escherichia coli O5:K4(L):H4 str.
ATCC 23502]
gi|443616850|ref|YP_007380706.1| ATP-dependent RNA helicase RhlE [Escherichia coli APEC O78]
gi|450212255|ref|ZP_21894522.1| ATP-dependent RNA helicase RhlE [Escherichia coli O08]
gi|450240632|ref|ZP_21899377.1| ATP-dependent RNA helicase RhlE [Escherichia coli S17]
gi|548730|sp|P25888.3|RHLE_ECOLI RecName: Full=ATP-dependent RNA helicase RhlE
gi|560801|gb|AAA53653.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
W3110]
gi|1787016|gb|AAC73884.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
MG1655]
gi|4062355|dbj|BAA35457.1| RNA helicase [Escherichia coli str. K12 substr. W3110]
gi|169755775|gb|ACA78474.1| DEAD/DEAH box helicase domain protein [Escherichia coli ATCC 8739]
gi|169888291|gb|ACB01998.1| RNA helicase [Escherichia coli str. K-12 substr. DH10B]
gi|188490172|gb|EDU65275.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli 53638]
gi|190903787|gb|EDV63502.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli B7A]
gi|194418629|gb|EDX34716.1| putative ATP-dependent RNA helicase RhlE [Shigella dysenteriae
1012]
gi|194422691|gb|EDX38688.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli 101-1]
gi|209911302|dbj|BAG76376.1| putative ATP-dependent RNA helicase [Escherichia coli SE11]
gi|218351003|emb|CAU96707.1| RNA helicase [Escherichia coli 55989]
gi|218360149|emb|CAQ97698.1| RNA helicase [Escherichia coli IAI1]
gi|238863492|gb|ACR65490.1| RNA helicase [Escherichia coli BW2952]
gi|242376589|emb|CAQ31298.1| ATP-dependent RNA helicase [Escherichia coli BL21(DE3)]
gi|253325244|gb|ACT29846.1| DEAD/DEAH box helicase domain protein [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253972775|gb|ACT38446.1| RNA helicase [Escherichia coli B str. REL606]
gi|253976995|gb|ACT42665.1| RNA helicase [Escherichia coli BL21(DE3)]
gi|260450056|gb|ACX40478.1| DEAD/DEAH box helicase domain protein [Escherichia coli DH1]
gi|300401169|gb|EFJ84707.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 84-1]
gi|300412990|gb|EFJ96300.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 115-1]
gi|300420852|gb|EFK04163.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 182-1]
gi|300462602|gb|EFK26095.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 187-1]
gi|300531132|gb|EFK52194.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 107-1]
gi|300841050|gb|EFK68810.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 124-1]
gi|300845553|gb|EFK73313.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 78-1]
gi|306906433|gb|EFN36947.1| DEAD/DEAH box helicase domain protein [Escherichia coli W]
gi|308122160|gb|EFO59422.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 145-7]
gi|309701075|emb|CBJ00373.1| putative ATP-dependent RNA helicase [Escherichia coli ETEC H10407]
gi|310336633|gb|EFQ01800.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 1827-70]
gi|315060033|gb|ADT74360.1| RNA helicase [Escherichia coli W]
gi|315135447|dbj|BAJ42606.1| ATP-dependent RNA helicase RhlE [Escherichia coli DH1]
gi|315257782|gb|EFU37750.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 85-1]
gi|320178508|gb|EFW53473.1| ATP-dependent RNA helicase RhlE [Shigella boydii ATCC 9905]
gi|323172087|gb|EFZ57726.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli LT-68]
gi|323379408|gb|ADX51676.1| DEAD/DEAH box helicase domain protein [Escherichia coli KO11FL]
gi|323942670|gb|EGB38835.1| DEAD/DEAH box helicase [Escherichia coli E482]
gi|323963044|gb|EGB58615.1| DEAD/DEAH box helicase [Escherichia coli H489]
gi|323971962|gb|EGB67183.1| DEAD/DEAH box helicase [Escherichia coli TA007]
gi|331038108|gb|EGI10328.1| ATP-dependent RNA helicase RhlE [Escherichia coli H736]
gi|332091029|gb|EGI96119.1| putative ATP-dependent RNA helicase rhlE [Shigella dysenteriae
155-74]
gi|332342129|gb|AEE55463.1| ATP-dependent RNA helicase RhlE [Escherichia coli UMNK88]
gi|339413797|gb|AEJ55469.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli UMNF18]
gi|340735584|gb|EGR64641.1| ATP-dependent RNA helicase RhlE [Escherichia coli O104:H4 str.
01-09591]
gi|341917368|gb|EGT66984.1| hypothetical protein C22711_1012 [Escherichia coli O104:H4 str.
C227-11]
gi|342363259|gb|EGU27369.1| ATP-dependent RNA helicase RhlE [Escherichia coli XH140A]
gi|342929072|gb|EGU97794.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 79-10]
gi|344195112|gb|EGV49182.1| ATP-dependent RNA helicase RhlE [Escherichia coli XH001]
gi|345343247|gb|EGW75637.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_B2F1]
gi|345365239|gb|EGW97348.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_EH250]
gi|345390130|gb|EGX19929.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_S1191]
gi|345395107|gb|EGX24859.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli TX1999]
gi|354856533|gb|EHF16991.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
04-8351]
gi|354857780|gb|EHF18233.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
C227-11]
gi|354864548|gb|EHF24977.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
C236-11]
gi|354874861|gb|EHF35227.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
09-7901]
gi|354878821|gb|EHF39168.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4404]
gi|354882613|gb|EHF42935.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-3677]
gi|354884235|gb|EHF44548.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4522]
gi|354887292|gb|EHF47567.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4623]
gi|354900487|gb|EHF60621.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4632 C1]
gi|354903632|gb|EHF63732.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4632 C2]
gi|354905995|gb|EHF66077.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4632 C3]
gi|354916912|gb|EHF76882.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4632 C5]
gi|354920973|gb|EHF80898.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4632 C4]
gi|359331489|dbj|BAL37936.1| RNA helicase [Escherichia coli str. K-12 substr. MDS42]
gi|371595351|gb|EHN84201.1| ATP-dependent RNA helicase rhlE [Escherichia coli H494]
gi|377998929|gb|EHV62016.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC6A]
gi|378000431|gb|EHV63502.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC6B]
gi|378002941|gb|EHV65990.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC6C]
gi|378012216|gb|EHV75148.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC6D]
gi|378015762|gb|EHV78653.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC6E]
gi|378018001|gb|EHV80868.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC7A]
gi|378026949|gb|EHV89581.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC7C]
gi|378032742|gb|EHV95323.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC7D]
gi|378037020|gb|EHV99555.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC7B]
gi|378041755|gb|EHW04213.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC7E]
gi|378221719|gb|EHX81964.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC14A]
gi|378242955|gb|EHY02903.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC15A]
gi|378250840|gb|EHY10743.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC15B]
gi|378257173|gb|EHY17015.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC15D]
gi|378261059|gb|EHY20856.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC15E]
gi|383404250|gb|AFH10493.1| ATP-dependent RNA helicase RhlE [Escherichia coli W]
gi|383474131|gb|EID66127.1| ATP-dependent RNA helicase RhlE [Escherichia coli W26]
gi|384378339|gb|EIE36221.1| DEAD/DEAH box helicase domain protein [Escherichia coli J53]
gi|385157769|gb|EIF19760.1| ATP-dependent RNA helicase RhlE [Escherichia coli O32:H37 str. P4]
gi|385536439|gb|EIF83332.1| ATP-dependent RNA helicase rhlE [Escherichia coli M919]
gi|385711895|gb|EIG48851.1| ATP-dependent RNA helicase rhlE [Escherichia coli H730]
gi|386123053|gb|EIG71654.1| ATP-dependent RNA helicase rhlE [Escherichia sp. 4_1_40B]
gi|386149237|gb|EIG95669.1| ATP-dependent RNA helicase RhlE [Escherichia coli 97.0246]
gi|386153782|gb|EIH05063.1| ATP-dependent RNA helicase RhlE [Escherichia coli 5.0588]
gi|386169308|gb|EIH35816.1| ATP-dependent RNA helicase RhlE [Escherichia coli 96.0497]
gi|386205896|gb|EII10402.1| ATP-dependent RNA helicase RhlE [Escherichia coli 5.0959]
gi|386224321|gb|EII46656.1| ATP-dependent RNA helicase RhlE [Escherichia coli 2.3916]
gi|386232930|gb|EII64915.1| ATP-dependent RNA helicase RhlE [Escherichia coli 2.4168]
gi|386242091|gb|EII79004.1| ATP-dependent RNA helicase RhlE [Escherichia coli 3.2303]
gi|386256063|gb|EIJ05751.1| ATP-dependent RNA helicase RhlE [Escherichia coli B41]
gi|388385529|gb|EIL47208.1| ATP-dependent RNA helicase RhlE [Escherichia coli 541-15]
gi|388401755|gb|EIL62377.1| ATP-dependent RNA helicase RhlE [Escherichia coli 75]
gi|391270091|gb|EIQ28988.1| ATP-dependent RNA helicase rhlE [Shigella boydii 965-58]
gi|391309255|gb|EIQ66932.1| ATP-dependent RNA helicase rhlE [Escherichia coli EPECa12]
gi|404292334|gb|EJZ49160.1| ATP-dependent RNA helicase rhlE [Escherichia sp. 1_1_43]
gi|406778712|gb|AFS58136.1| ATP-dependent RNA helicase RhlE [Escherichia coli O104:H4 str.
2009EL-2050]
gi|407055295|gb|AFS75346.1| ATP-dependent RNA helicase RhlE [Escherichia coli O104:H4 str.
2011C-3493]
gi|407064304|gb|AFS85351.1| ATP-dependent RNA helicase RhlE [Escherichia coli O104:H4 str.
2009EL-2071]
gi|408197166|gb|EKI22433.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW15901]
gi|408457992|gb|EKJ81782.1| ATP-dependent RNA helicase RhlE [Escherichia coli AD30]
gi|408572879|gb|EKK48760.1| ATP-dependent RNA helicase rhlE [Escherichia coli 8.0569]
gi|412962070|emb|CCK45984.1| putative ATP-dependent RNA helicase [Escherichia coli chi7122]
gi|412968652|emb|CCJ43277.1| putative ATP-dependent RNA helicase [Escherichia coli]
gi|429349931|gb|EKY86666.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02030]
gi|429350885|gb|EKY87608.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02033-1]
gi|429351021|gb|EKY87742.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02092]
gi|429365299|gb|EKZ01912.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02093]
gi|429366250|gb|EKZ02853.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02281]
gi|429368813|gb|EKZ05396.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02318]
gi|429381220|gb|EKZ17707.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02913]
gi|429382188|gb|EKZ18653.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-03439]
gi|429383623|gb|EKZ20082.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-03943]
gi|429395454|gb|EKZ31820.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-04080]
gi|429396668|gb|EKZ33016.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429397546|gb|EKZ33892.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429409274|gb|EKZ45504.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429417734|gb|EKZ53881.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429421403|gb|EKZ57524.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429423143|gb|EKZ59251.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429427145|gb|EKZ63230.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429434027|gb|EKZ70056.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429438014|gb|EKZ74008.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429443370|gb|EKZ79322.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429449473|gb|EKZ85372.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec12-0466]
gi|429455349|gb|EKZ91205.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-9941]
gi|430888022|gb|ELC10745.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE10]
gi|430942326|gb|ELC62459.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE44]
gi|431017641|gb|ELD31096.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE212]
gi|431056498|gb|ELD65999.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE233]
gi|431062742|gb|ELD72002.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE234]
gi|431097945|gb|ELE03270.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE51]
gi|431107436|gb|ELE11601.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE56]
gi|431164351|gb|ELE64742.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE77]
gi|431172964|gb|ELE73045.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE81]
gi|431201896|gb|ELF00592.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE111]
gi|431212870|gb|ELF10791.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE119]
gi|431224108|gb|ELF21337.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE156]
gi|431229075|gb|ELF25727.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE161]
gi|431245926|gb|ELF40204.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE171]
gi|431285837|gb|ELF76672.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE42]
gi|431299242|gb|ELF88817.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE29]
gi|431312697|gb|ELG00686.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE48]
gi|431356509|gb|ELG43199.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE91]
gi|431412760|gb|ELG95559.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE154]
gi|431454978|gb|ELH35334.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE184]
gi|431469395|gb|ELH49324.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE197]
gi|431571170|gb|ELI44070.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE120]
gi|431613756|gb|ELI82925.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE138]
gi|431650869|gb|ELJ18177.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE163]
gi|431662039|gb|ELJ28849.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE166]
gi|431695617|gb|ELJ60919.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE232]
gi|431720457|gb|ELJ84486.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE90]
gi|441604670|emb|CCP98208.1| ATP-dependent RNA helicase RhlE [Escherichia coli O10:K5(L):H4 str.
ATCC 23506]
gi|441651750|emb|CCQ02695.1| ATP-dependent RNA helicase RhlE [Escherichia coli O5:K4(L):H4 str.
ATCC 23502]
gi|443421358|gb|AGC86262.1| ATP-dependent RNA helicase RhlE [Escherichia coli APEC O78]
gi|449322017|gb|EMD12021.1| ATP-dependent RNA helicase RhlE [Escherichia coli O08]
gi|449324310|gb|EMD14245.1| ATP-dependent RNA helicase RhlE [Escherichia coli S17]
Length = 454
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 125/429 (29%), Positives = 197/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR + K +
Sbjct: 160 RML--------------------------------DMGFIHDIRRVLTKLPAKRQ----- 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|331651800|ref|ZP_08352819.1| ATP-dependent RNA helicase RhlE [Escherichia coli M718]
gi|417627721|ref|ZP_12277968.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_MHI813]
gi|432453551|ref|ZP_19695788.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE193]
gi|433032291|ref|ZP_20220065.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE112]
gi|331050078|gb|EGI22136.1| ATP-dependent RNA helicase RhlE [Escherichia coli M718]
gi|345378025|gb|EGX09956.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_MHI813]
gi|430973690|gb|ELC90635.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE193]
gi|431558677|gb|ELI32286.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE112]
Length = 454
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 125/429 (29%), Positives = 197/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR + K +
Sbjct: 160 RML--------------------------------DMGFIHDIRRVLTKLPAKRQ----- 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|170683710|ref|YP_001742900.1| ATP-dependent RNA helicase RhlE [Escherichia coli SMS-3-5]
gi|422827999|ref|ZP_16876172.1| ATP-dependent RNA helicase rhlE [Escherichia coli B093]
gi|170521428|gb|ACB19606.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli SMS-3-5]
gi|371615757|gb|EHO04145.1| ATP-dependent RNA helicase rhlE [Escherichia coli B093]
Length = 454
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 126/429 (29%), Positives = 196/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 160 RML--------------------------------DMGFIHDIRRV-----LTKLPAKRQ 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|310816695|ref|YP_003964659.1| ATP-dependent RNA helicase RhlE [Ketogulonicigenium vulgare Y25]
gi|385234299|ref|YP_005795641.1| ATP-dependent RNA helicase [Ketogulonicigenium vulgare WSH-001]
gi|308755430|gb|ADO43359.1| putative ATP-dependent RNA helicase RhlE [Ketogulonicigenium
vulgare Y25]
gi|343463210|gb|AEM41645.1| ATP-dependent RNA helicase, putative [Ketogulonicigenium vulgare
WSH-001]
Length = 517
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 121/422 (28%), Positives = 195/422 (46%), Gaps = 82/422 (19%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LDP++ A+ G ++ P+Q E L RD+ + TG+GKT S+ LP++Q L
Sbjct: 9 LDPKVLQAVAEAGYTTPTPIQAGAIPE----ALAGRDVLGIAQTGTGKTASFTLPMIQLL 64
Query: 95 S-NRA-VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
S RA R R+LV+ PTR+LA QV + F A L+ L +G
Sbjct: 65 SRGRARARMPRSLVLCPTRELAAQVAENFDMYAKYTKLTKALLIG--------------- 109
Query: 153 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLR 211
G+ + +D L + VD+L+ATPGRL+DH RG L + +VVDE DR+L
Sbjct: 110 ----GVSFKDQDTL--IDRGVDVLIATPGRLLDHFE--RGKLLLTGVQIMVVDEADRMLD 161
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
F+P +ER F+ P+ R +
Sbjct: 162 MG-------------------------FIPD------------IERIFQMTPFTRQT-LF 183
Query: 272 LSATLTQDPNKLAQLDLHHPLFLTTGE---TRYKLPERLESYKLICESKLKPLYLVALLQ 328
SAT+ + ++ L P + T + + + +K + + +P A+L+
Sbjct: 184 FSATMAPEIERITNTFLSAPARIEVARAATTNQNITQAVVQFKGSSKER-EPSEKRAVLR 242
Query: 329 SLGEEKCIVFTSSVESTHR------LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR 382
+L E + T+++ +R + L +G + G QS R +TL FR
Sbjct: 243 ALIEAESATLTNAIIFCNRKIDVDIVAKSLKKYG---YNAEPIHGDLDQSQRMRTLDGFR 299
Query: 383 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL-LHK 441
+G ++ LV+SD RG+D+ V++V N+D P++ + Y+HR GRT RAG+ G F + + +
Sbjct: 300 DGSVKFLVASDVAARGLDIPSVSHVFNFDVPSHAEDYVHRIGRTGRAGRTGSTFMICVPR 359
Query: 442 DE 443
DE
Sbjct: 360 DE 361
>gi|398978771|ref|ZP_10688050.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM25]
gi|398136766|gb|EJM25846.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM25]
Length = 492
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 139/486 (28%), Positives = 208/486 (42%), Gaps = 91/486 (18%)
Query: 6 KKSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGP 65
K PV+PW V E H L P L A+Q++G P+Q V +G
Sbjct: 80 KPKAPVIPWKLEDFVVEPQEGKTRFHDFKLSPELMHAIQDLGFPYCTPIQAQV----LGF 135
Query: 66 GLFERDLCINSPTGSGKTLSYALPIVQTL------SNRAVRCLRALVVLPTRDLALQVKD 119
L +D + TG+GKT ++ + I+ L R + RAL++ PTR+L +Q+
Sbjct: 136 TLAGKDAIGRAQTGTGKTAAFLISIITQLLQTPPPKERYMGEPRALIIAPTRELVVQIAK 195
Query: 120 VFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179
A + GL+V VG ++ LEA C DILVAT
Sbjct: 196 DAADLTKYTGLNVMTFVGGMDFDKQLKH------LEARHC--------------DILVAT 235
Query: 180 PGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTF 239
PGRL+D N L+ + +V+DE DR+L + +P V Q+ R S+ T
Sbjct: 236 PGRLLD-FNQRGDVHLDMVEVMVLDEADRMLDMGF---IPQVRQIIRQTPPK--SERQTL 289
Query: 240 LPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP-------NKLAQLDLHHPL 292
L SA F D M L+ T DP +A ++ +
Sbjct: 290 LFSA--------------TFTDD------VMNLAKQWTTDPAIVEIEVTNVANENVEQHI 329
Query: 293 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352
+ G +YKL L L+ G E+ IVF + + R+ L
Sbjct: 330 YAVAGADKYKL-------------------LFNLVNDNGWERVIVFANRKDEVRRIEERL 370
Query: 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 412
G I + SG Q R KTL+ FREGKI+VLV++D RG+ ++G+++V+N+
Sbjct: 371 VRDG---INAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTL 427
Query: 413 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF----KKLLQKADNDSCPIHSIPSSL 468
P Y+HR GRT RAG G + +D+ + +KL +K ++ P H +
Sbjct: 428 PEVPDDYVHRIGRTGRAGADGVSISFAGEDDSYQLPSIEEKLGRKISCETPPTHLL--RA 485
Query: 469 IESLRP 474
+E RP
Sbjct: 486 VERKRP 491
>gi|74143864|dbj|BAE41247.1| unnamed protein product [Mus musculus]
Length = 323
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 89/277 (32%), Positives = 142/277 (51%), Gaps = 42/277 (15%)
Query: 174 DILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRF 233
+I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 12 NIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK--- 68
Query: 234 SDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLF 293
TFL SAT+T+ KL + L +P+
Sbjct: 69 ----TFL-------------------------------FSATMTKKVQKLQRAALKNPVK 93
Query: 294 LTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN 353
++Y+ E+L+ Y L SK K YLV +L L ++F S+ +T R LL
Sbjct: 94 CAVS-SKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLR 152
Query: 354 HFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP 413
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D P
Sbjct: 153 NLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIP 209
Query: 414 AYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
+ K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 210 THSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 246
>gi|218704175|ref|YP_002411694.1| ATP-dependent RNA helicase RhlE [Escherichia coli UMN026]
gi|293404097|ref|ZP_06648091.1| ATP-dependent RNA helicase RhlE [Escherichia coli FVEC1412]
gi|298379878|ref|ZP_06989483.1| ATP-dependent RNA helicase RhlE [Escherichia coli FVEC1302]
gi|300898284|ref|ZP_07116635.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 198-1]
gi|331662152|ref|ZP_08363075.1| ATP-dependent RNA helicase RhlE [Escherichia coli TA143]
gi|417585601|ref|ZP_12236377.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_C165-02]
gi|422332390|ref|ZP_16413404.1| ATP-dependent RNA helicase rhlE [Escherichia coli 4_1_47FAA]
gi|432352753|ref|ZP_19596037.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE2]
gi|432400987|ref|ZP_19643741.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE26]
gi|432425043|ref|ZP_19667558.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE181]
gi|432459813|ref|ZP_19701970.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE204]
gi|432474903|ref|ZP_19716911.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE208]
gi|432488391|ref|ZP_19730277.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE213]
gi|432521485|ref|ZP_19758641.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE228]
gi|432536852|ref|ZP_19773769.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE235]
gi|432630413|ref|ZP_19866357.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE80]
gi|432640011|ref|ZP_19875851.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE83]
gi|432665080|ref|ZP_19900666.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE116]
gi|432773985|ref|ZP_20008271.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE54]
gi|432838408|ref|ZP_20071897.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE140]
gi|432885207|ref|ZP_20099802.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE158]
gi|432911150|ref|ZP_20117631.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE190]
gi|433017767|ref|ZP_20206028.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE105]
gi|433052168|ref|ZP_20239394.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE122]
gi|433067044|ref|ZP_20253870.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE128]
gi|433157777|ref|ZP_20342642.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE177]
gi|433177329|ref|ZP_20361779.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE82]
gi|433202290|ref|ZP_20386089.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE95]
gi|218431272|emb|CAR12150.1| RNA helicase [Escherichia coli UMN026]
gi|291428683|gb|EFF01708.1| ATP-dependent RNA helicase RhlE [Escherichia coli FVEC1412]
gi|298279576|gb|EFI21084.1| ATP-dependent RNA helicase RhlE [Escherichia coli FVEC1302]
gi|300358073|gb|EFJ73943.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 198-1]
gi|331060574|gb|EGI32538.1| ATP-dependent RNA helicase RhlE [Escherichia coli TA143]
gi|345340250|gb|EGW72669.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_C165-02]
gi|373246701|gb|EHP66153.1| ATP-dependent RNA helicase rhlE [Escherichia coli 4_1_47FAA]
gi|430877681|gb|ELC01115.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE2]
gi|430927585|gb|ELC48148.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE26]
gi|430958277|gb|ELC76871.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE181]
gi|430991096|gb|ELD07512.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE204]
gi|431008411|gb|ELD23212.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE208]
gi|431023274|gb|ELD36471.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE213]
gi|431044549|gb|ELD54821.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE228]
gi|431072429|gb|ELD80180.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE235]
gi|431173448|gb|ELE73524.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE80]
gi|431184527|gb|ELE84284.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE83]
gi|431203485|gb|ELF02142.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE116]
gi|431319983|gb|ELG07635.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE54]
gi|431390874|gb|ELG74522.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE140]
gi|431419190|gb|ELH01548.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE158]
gi|431443866|gb|ELH24891.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE190]
gi|431536139|gb|ELI12470.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE105]
gi|431574944|gb|ELI47701.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE122]
gi|431589985|gb|ELI61099.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE128]
gi|431681153|gb|ELJ46959.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE177]
gi|431709238|gb|ELJ73708.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE82]
gi|431725326|gb|ELJ89181.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE95]
Length = 454
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 127/430 (29%), Positives = 198/430 (46%), Gaps = 82/430 (19%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQT 93
L P + A+ G P+Q Q+ I P + E RDL ++ TG+GKT + LP++Q
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAI-PAVMEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 94 LSNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
L R R +RAL++ PTR+LA Q+ G V S I L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSL 107
Query: 149 IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDET 206
+ + G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE
Sbjct: 108 V----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEA 158
Query: 207 DRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPR 266
DR+L G + IRR P R
Sbjct: 159 DRML--------------------------------DMGFIHDIRRV-----LTKLPAKR 181
Query: 267 LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVAL 326
++ SAT + D LA+ LH+PL + R +++ + + K K L +
Sbjct: 182 Q-NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHM 239
Query: 327 LQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 386
+ ++ +VFT + + L LN G I+ G + Q R++ L F+ G I
Sbjct: 240 IGKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDI 296
Query: 387 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE--- 443
+VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356
Query: 444 VKRFKKLLQK 453
++ +KLL+K
Sbjct: 357 LRDIEKLLKK 366
>gi|407782464|ref|ZP_11129676.1| DEAD/DEAH box helicase [Oceanibaculum indicum P24]
gi|407205829|gb|EKE75795.1| DEAD/DEAH box helicase [Oceanibaculum indicum P24]
Length = 515
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 118/410 (28%), Positives = 185/410 (45%), Gaps = 76/410 (18%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR- 100
A+ G + P+Q + I P L RDL + TG+GKT ++ALPI+ L+
Sbjct: 16 AVTAEGYETPTPIQA----QAIPPVLTGRDLMGIAQTGTGKTAAFALPILNRLTEEGNHI 71
Query: 101 -----CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLE 155
R L++ PTR+LA Q+ + F + LSV G
Sbjct: 72 KTPRGSCRVLILSPTRELASQIAESFRVYGKFLNLSVATVFG------------------ 113
Query: 156 AGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 215
G+ P+ + LQ VDI+VATPGRL+DH+ R L+ + V+DE D++L +
Sbjct: 114 -GVSAGPQ--AKALQRGVDIVVATPGRLIDHLQ-NRVVRLDQVEIFVLDEADQMLDMGFI 169
Query: 216 AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSAT 275
+ +++ + +N F A+ PR ++ L+
Sbjct: 170 QPIRRIVKTLPAKRQNLFFSAT--------------------------MPREIE-TLAGE 202
Query: 276 LTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ--SLGEE 333
L DP K+A P+ T ER+ + + LK L LL +G
Sbjct: 203 LLHDPAKVAVT----PVASTA--------ERVSQQVIFVPTGLKRALLADLLSDAQMGFG 250
Query: 334 KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 393
+ +VFT + ++ L G + I G + QS R + L AFR+G +VL+++D
Sbjct: 251 RTLVFTRTKHGADKVVRYLEGAGIVSAAIH---GNKSQSQRERALLAFRDGACKVLIATD 307
Query: 394 AMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443
RG+DV+GV +V+NYD P ++Y+HR GRTARAG G + ++E
Sbjct: 308 IAARGIDVDGVTHVINYDLPNIAESYVHRIGRTARAGADGMAISFCDREE 357
>gi|309786547|ref|ZP_07681170.1| putative ATP-dependent RNA helicase rhlE [Shigella dysenteriae
1617]
gi|308925610|gb|EFP71094.1| putative ATP-dependent RNA helicase rhlE [Shigella dysenteriae
1617]
Length = 449
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 125/429 (29%), Positives = 197/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 3 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 58
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 59 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 103
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 104 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 154
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR + K +
Sbjct: 155 RML--------------------------------DMGFIHDIRRVLTKLPAKRQ----- 177
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 178 -NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 235
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 236 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 292
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 293 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 352
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 353 RDIEKLLKK 361
>gi|419865132|ref|ZP_14387522.1| ATP-dependent RNA helicase RhlE [Escherichia coli O103:H25 str.
CVM9340]
gi|388338203|gb|EIL04676.1| ATP-dependent RNA helicase RhlE [Escherichia coli O103:H25 str.
CVM9340]
Length = 454
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 126/429 (29%), Positives = 196/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNICSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 160 RML--------------------------------DMGFIHDIRRV-----LTKLPAKRQ 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|293409172|ref|ZP_06652748.1| conserved hypothetical protein [Escherichia coli B354]
gi|291469640|gb|EFF12124.1| conserved hypothetical protein [Escherichia coli B354]
Length = 454
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 127/430 (29%), Positives = 198/430 (46%), Gaps = 82/430 (19%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQT 93
L P + A+ G P+Q Q+ I P + E RDL ++ TG+GKT + LP++Q
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAI-PAVMEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 94 LSNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
L R R +RAL++ PTR+LA Q+ G V S I L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSL 107
Query: 149 IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDET 206
+ + G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE
Sbjct: 108 V----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEA 158
Query: 207 DRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPR 266
DR+L G + IRR P R
Sbjct: 159 DRML--------------------------------DMGFIHDIRRV-----LTKLPAKR 181
Query: 267 LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVAL 326
++ SAT + D LA+ LH+PL + R +++ + + K K L +
Sbjct: 182 Q-NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHM 239
Query: 327 LQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 386
+ ++ +VFT + + L LN G I+ G + Q R++ L F+ G I
Sbjct: 240 IGKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDI 296
Query: 387 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE--- 443
+VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356
Query: 444 VKRFKKLLQK 453
++ +KLL+K
Sbjct: 357 LRDIEKLLKK 366
>gi|84502634|ref|ZP_01000753.1| ATP-dependent RNA helicase RhlE [Oceanicola batsensis HTCC2597]
gi|84389029|gb|EAQ01827.1| ATP-dependent RNA helicase RhlE [Oceanicola batsensis HTCC2597]
Length = 471
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 124/421 (29%), Positives = 189/421 (44%), Gaps = 80/421 (19%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LDP++ A+ + G S P+Q Q I P L RD+ + TG+GKT S+ LP++ L
Sbjct: 9 LDPKVLQAIADAGYESPTPIQ----QGAIPPALEGRDVLGIAQTGTGKTASFTLPMITLL 64
Query: 95 S-NRA-VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
S RA R R+LV+ PTR+LA QV + F + L+ L +G
Sbjct: 65 SKGRARARMPRSLVLAPTRELAAQVAENFDTYTKHLKLTKALLIG--------------- 109
Query: 153 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLR 211
G+ + +D L + VD+L+ATPGRL+DH RG L + +VVDE DR+L
Sbjct: 110 ----GVSFKEQDAL--IDRGVDVLIATPGRLLDHFE--RGKLLLTGVQIMVVDEADRMLD 161
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
F+P +ER F P+ R +
Sbjct: 162 MG-------------------------FIPD------------IERIFSLTPFTRQT-LF 183
Query: 272 LSATLTQDPNKLAQLDLHHPLFL------TTGETRYKLPERLESYKLICESKLKPLYLVA 325
SAT+ + ++ L P + T ET + + + E K L
Sbjct: 184 FSATMAPEIERITNTFLSGPARVEVARQATASETIEQGVVMFKGSRRDREGSEKRQVLRD 243
Query: 326 LLQSLGEE--KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 383
L+ GE+ I+F + L +G G QS R+KTL+ FR+
Sbjct: 244 LIDREGEDCRNAIIFCNRKTDVDVTAKSLKKYG---FDAAPIHGDLEQSQRTKTLEGFRD 300
Query: 384 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL-LHKD 442
G ++ LV+SD RG+D+ V++V N+D P++ + Y+HR GRT RAG+ G+ + + +D
Sbjct: 301 GSLRFLVASDVAARGLDIPNVSHVFNFDVPSHAEDYVHRIGRTGRAGRSGKAIMICVPRD 360
Query: 443 E 443
E
Sbjct: 361 E 361
>gi|422763931|ref|ZP_16817684.1| DEAD/DEAH box helicase [Escherichia coli E1167]
gi|324116221|gb|EGC10143.1| DEAD/DEAH box helicase [Escherichia coli E1167]
Length = 454
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 125/429 (29%), Positives = 197/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR + K +
Sbjct: 160 RML--------------------------------DMGFIHDIRRVLTKLPAKRQ----- 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|58177858|gb|AAH89107.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 [Rattus norvegicus]
Length = 598
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 126/448 (28%), Positives = 199/448 (44%), Gaps = 70/448 (15%)
Query: 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSP 77
P ++ F+ LD + PRL LQN+ + + F V + + I L R+L ++P
Sbjct: 158 PDSIATFQQ--LDQEYKISPRL---LQNI-LDAGFQVPTPIQMQAIPVMLHGRELLASAP 211
Query: 78 TGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVG 137
TGSGKTL++++PI+ L + RALV+ PTR+LA Q+ I+ G + + +
Sbjct: 212 TGSGKTLAFSIPILMQLKQPTNKGFRALVISPTRELASQIHRELIKISEGTGFRIHM-IH 270
Query: 138 QSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR-GFTLE 196
+++IA + + P+ DILV TP RL+ + G L
Sbjct: 271 KAAIAAK--------------KFGPKS-----SKKFDILVTTPNRLIYLLKQEPPGIDLT 311
Query: 197 HLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSD--ASTFLPSAFGSLKTIRRCG 254
+ +LVVDE+D+L D + F D AS FL
Sbjct: 312 SVEWLVVDESDKLFE----------------DGKTGFRDQLASIFLACT----------- 344
Query: 255 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC 314
P++ + + SAT D + +L+L + + ++ G R E +E L
Sbjct: 345 ---------SPKVRRAMFSATFAYDVEQWCKLNLDNIVSVSIG-ARNSAVETVEQELLFV 394
Query: 315 ESKL-KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSV 373
S+ K L + L++ +VF S+E L L + G I + + Q
Sbjct: 395 GSETGKLLAMRELVKKGFNPPVLVFVQSIERAKELFHELIYEG---INVDVIHAERTQQQ 451
Query: 374 RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 433
R T+ +FR GKI VL+ + + RG+D +GVN V+NYD P YIHR GRT RAG G
Sbjct: 452 RDNTVHSFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNRG 511
Query: 434 RCFTLLHKDEVKRFKKLLQKADNDSCPI 461
+ T +D+ + + CP+
Sbjct: 512 KAVTFFTEDDKPLLRSVANVIQQAGCPV 539
>gi|319899018|ref|YP_004159111.1| ATP-dependent RNA helicase [Bartonella clarridgeiae 73]
gi|319402982|emb|CBI76535.1| ATP-dependent RNA helicase [Bartonella clarridgeiae 73]
Length = 454
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 130/433 (30%), Positives = 205/433 (47%), Gaps = 90/433 (20%)
Query: 28 PLDHLPCLDPRLKV--ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLS 85
PLD L KV A++++G ++ P+Q A TI L ++D+ + TG+GKT S
Sbjct: 4 PLDSFDNLGLSKKVIKAIKSVGYTTPTPIQSA----TIPHILQKKDVLGIAQTGTGKTAS 59
Query: 86 YALPIVQTLSN-RA-VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIAD 143
+ LP++ L RA R R L++ PTR+LA QVK+ + L+V L +G
Sbjct: 60 FVLPMLTLLEKGRARARIPRTLILEPTRELAAQVKENYDKYGIHHNLNVALLIG------ 113
Query: 144 EISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLV 202
G+ ++ +D ++L+ DIL+ATPGRL+DH RG L + LV
Sbjct: 114 -------------GVSFEHQD--RKLERGADILIATPGRLLDHFE--RGKLLLVGVEILV 156
Query: 203 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDK 262
+DE DR+L F+P+ +ER K
Sbjct: 157 IDEADRMLDMG-------------------------FIPN------------IERICKLT 179
Query: 263 PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL---TTGETRYKLPERLESYKLICESKLK 319
P+ R + SAT+ + +L + LH P+++ T T + +RL +S K
Sbjct: 180 PFTRQT-LFFSATMAPEITQLTKKFLHSPIYVEITKTFSTAKTITQRL------VKSGSK 232
Query: 320 PLYLVALLQSL----GEE--KCIVFTSSVESTHRLC-TLLNHFGELRIKIKEYSGLQRQS 372
P A+L+ L G+E I+F + + L +L+ H + G Q
Sbjct: 233 PWDKRAILRELIHKEGDELKNAIIFCNRKKDISELFRSLVKH----NFSVGALHGDMDQH 288
Query: 373 VRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL 432
R+ TL F++ K+ +LV+SD RG+D+ V++V NYD P + + YIHR GRT RA +
Sbjct: 289 SRTNTLANFKDNKLTLLVASDVAARGLDIPAVSHVFNYDVPTHAEDYIHRIGRTGRAKRN 348
Query: 433 GRCFTLLHKDEVK 445
G+ FT++ K + K
Sbjct: 349 GKAFTIVTKADEK 361
>gi|432552747|ref|ZP_19789477.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE47]
gi|431086319|gb|ELD92342.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE47]
Length = 453
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 125/429 (29%), Positives = 196/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 160 RML--------------------------------DMGFIHDIRRV-----LTKLPAKRQ 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L +N G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQINKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|418254156|ref|ZP_12879053.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Shigella flexneri 6603-63]
gi|420370803|ref|ZP_14871309.1| ATP-dependent RNA helicase rhlE [Shigella flexneri 1235-66]
gi|391319894|gb|EIQ76836.1| ATP-dependent RNA helicase rhlE [Shigella flexneri 1235-66]
gi|397900513|gb|EJL16872.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Shigella flexneri 6603-63]
Length = 406
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 126/429 (29%), Positives = 196/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 160 RML--------------------------------DMGFIHDIRRV-----LTKLPAKRQ 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSVAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLEK 366
>gi|411010727|ref|ZP_11387056.1| ATP-dependent RNA helicase RhlE [Aeromonas aquariorum AAK1]
Length = 415
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 114/421 (27%), Positives = 186/421 (44%), Gaps = 72/421 (17%)
Query: 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQT 93
L PRL+ L +G + PVQ + I L RDL + TG+GKT ++ LP+++
Sbjct: 10 ALSPRLQQTLTELGYVAPTPVQASA----IPVILAGRDLMAGAQTGTGKTAAFVLPLLEQ 65
Query: 94 L----SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
L ++ A R +RALV++PTR+LA+QV + A L+ L G SIA ++
Sbjct: 66 LLQHPTSDAPRPIRALVLVPTRELAVQVHESVTRYAKGTDLTSTLVYGGVSIAAQV---- 121
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209
+ L++ VD+L+ATPGRL+DH+ +L L +LV DE DR+
Sbjct: 122 -----------------EALKAGVDLLIATPGRLLDHLRQG-ALSLAALRHLVFDEADRM 163
Query: 210 LREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVK 269
L + + +L+ +D + A T + F K + R P L++
Sbjct: 164 LDMGFMDEIKALLKQIPADRQTLLFSA-TCDDNLFALSKVLLRD-----------PALIE 211
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329
+ P ++ ++ G+ + L E + K
Sbjct: 212 VA--------PRNTTAAEVEQRVYTVDGDRKLALVEHMLKVK------------------ 245
Query: 330 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 389
G ++F+ + + +L G+ I + G Q R K L FR G +Q L
Sbjct: 246 -GWAPALIFSRTRQGADKLA---QQLGKTGINALAFHGDLSQGAREKVLLEFRAGTLQAL 301
Query: 390 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKK 449
V++D RG+D+ +N V+N + P + Y+HR GRT RAG G TL ++ +K
Sbjct: 302 VATDVAARGLDITDLNYVINMEFPFVAEDYVHRIGRTGRAGNKGLAITLFSPEDAPLLEK 361
Query: 450 L 450
+
Sbjct: 362 V 362
>gi|417711406|ref|ZP_12360409.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-272]
gi|417716231|ref|ZP_12365163.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-227]
gi|417826857|ref|ZP_12473430.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Shigella flexneri J1713]
gi|420319296|ref|ZP_14821149.1| ATP-dependent RNA helicase rhlE [Shigella flexneri 2850-71]
gi|333009786|gb|EGK29235.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-272]
gi|333020451|gb|EGK39714.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-227]
gi|335576625|gb|EGM62870.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Shigella flexneri J1713]
gi|391253484|gb|EIQ12657.1| ATP-dependent RNA helicase rhlE [Shigella flexneri 2850-71]
Length = 454
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 126/429 (29%), Positives = 196/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 160 RML--------------------------------DMGFIHDIRRV-----LTKLPAKRQ 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSVAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|385208130|ref|ZP_10034998.1| DNA/RNA helicase, superfamily II [Burkholderia sp. Ch1-1]
gi|385180468|gb|EIF29744.1| DNA/RNA helicase, superfamily II [Burkholderia sp. Ch1-1]
Length = 520
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 121/423 (28%), Positives = 189/423 (44%), Gaps = 75/423 (17%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L +L A+ +G ++ P+Q + G DL + TG+GKT + LPI+Q L
Sbjct: 8 LSEQLVRAVHELGYTTPTPIQTQAIPAVLNGG----DLLAGAQTGTGKTAGFTLPILQRL 63
Query: 95 -SNRAV------RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISE 147
S+ AV R +RAL++ PTR+LA QV++ A + L + G
Sbjct: 64 NSSPAVANGSGKRAVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFG---------- 113
Query: 148 LIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 207
G+ +P+ + L+S VDI+VATPGRL+DH+ + L HL LV+DE D
Sbjct: 114 ---------GVGINPQ--IGALRSGVDIVVATPGRLLDHMQ-QKTIDLSHLEILVLDEAD 161
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L + + VL LP P+
Sbjct: 162 RMLDMGFIHDIKRVL---------------AKLP-----------------------PKR 183
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + + LA L P + + + K + L L L+
Sbjct: 184 QNLLFSATFSDEIKTLADNLLDSPALIEVARRNTTAESVAQKIHPVDRDKKREL-LTHLI 242
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
+ + +VFT + +RL L G I G + QS R++ L F++G +Q
Sbjct: 243 KQHNWFQVLVFTRTKHGANRLAEQLTKDG---INSLAIHGNKSQSARTRALAEFKDGTLQ 299
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 447
VLV++D RG+D++ + +VVNYD P + Y+HR GRT RAG G +L+ DE++
Sbjct: 300 VLVATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQLL 359
Query: 448 KKL 450
K +
Sbjct: 360 KDI 362
>gi|156973271|ref|YP_001444178.1| ATP-dependent RNA helicase SrmB [Vibrio harveyi ATCC BAA-1116]
gi|388600479|ref|ZP_10158875.1| ATP-dependent RNA helicase SrmB [Vibrio campbellii DS40M4]
gi|424032046|ref|ZP_17771467.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HENC-01]
gi|444427731|ref|ZP_21223102.1| ATP-dependent RNA helicase SrmB [Vibrio campbellii CAIM 519 = NBRC
15631]
gi|156524865|gb|ABU69951.1| hypothetical protein VIBHAR_00952 [Vibrio harveyi ATCC BAA-1116]
gi|408876458|gb|EKM15575.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HENC-01]
gi|444239029|gb|ELU50609.1| ATP-dependent RNA helicase SrmB [Vibrio campbellii CAIM 519 = NBRC
15631]
Length = 407
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 135/425 (31%), Positives = 197/425 (46%), Gaps = 78/425 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LD L A+ MG +Q E I L RD+ ++PTG+GKT ++ LP +Q L
Sbjct: 10 LDQNLLEAIDEMGYERPTKIQA----EAIPQALDGRDILASAPTGTGKTAAFVLPALQYL 65
Query: 95 SN---RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
+ R R L++ PTR+LA+QV D A+A L++ G
Sbjct: 66 QDFPRRKPGPARILILTPTRELAMQVADQARALAKNTKLNIFTITG-------------- 111
Query: 152 PKLEAGICY-DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 210
G+ Y + D+L Q DI+VATPGRL ++I+A R F + +L++DE DR+L
Sbjct: 112 -----GVQYQEHADILATTQ---DIVVATPGRLREYIDAER-FDCRAIEWLILDEADRML 162
Query: 211 REAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270
+ PTV +L+ NE R+ T L SA T+ GVE GF
Sbjct: 163 DMGFA---PTVDRLS---NECRWR-KQTLLFSA-----TLEGKGVE-GF----------- 198
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL 330
+A L +P A++D PL R K+ + E KL L + Q+
Sbjct: 199 --TADLLNEP---AEIDAKSPL-----RERKKIAQWYHRAD-DAEHKLALLKHIITEQA- 246
Query: 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 390
E+ IVF + E RL L +I G Q R+ + FREG + VL+
Sbjct: 247 --ERTIVFLKTRE---RLAELRAQLESAQIPCSWIQGEMPQDRRNNAISRFREGTVNVLL 301
Query: 391 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK------DEV 444
++D RG+D+ V++V+NYD P Y+HR GRTARAG+ G +++ D V
Sbjct: 302 ATDVAARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDRV 361
Query: 445 KRFKK 449
R+ K
Sbjct: 362 ARYVK 366
>gi|154417727|ref|XP_001581883.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
gi|121916114|gb|EAY20897.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
Length = 441
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 121/413 (29%), Positives = 196/413 (47%), Gaps = 64/413 (15%)
Query: 44 QNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR 103
+ +GIS VQ A ++ I + + S TG+GKT ++ALPI+ TLS +
Sbjct: 19 KEIGISKPTAVQQACVKQIITG----HNCIVISQTGTGKTAAFALPIISTLSKDPY-GIY 73
Query: 104 ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPE 163
ALV+ PTR+LA Q+ F + + +G +I D+ S L K P
Sbjct: 74 ALVISPTRELAQQICQQFKIFGRGMNADICPIIGGLAITDQASALEKNPH---------- 123
Query: 164 DVLQELQSAVDILVATPGRLMDHI-NATRG---FTLEHLCYLVVDETDRLLREAYQAWLP 219
I+VATPGR++ H+ +A++G F+ ++L YLV+DE DRL ++ Y W
Sbjct: 124 -----------IVVATPGRILHHLRSASKGNTRFSFDNLQYLVLDEVDRLFKDGY--W-D 169
Query: 220 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA---TL 276
VL++ + E R + + S L TI P P + K S T
Sbjct: 170 DVLEIIKYLPEKRQTLCFSATKSDQVDLLTI--MTKPPSTSSCPLPSVGKSWFSDDKLTF 227
Query: 277 TQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGE---- 332
+P L ++E K++ + + + +YL+ ++Q L E
Sbjct: 228 YWEPTD-------------------DLKPKIEHVKVLVQDEGREVYLMIIIQKLMEADLY 268
Query: 333 EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS 392
++ IVF S+ E+ + +L +F K ++S R K L+ FR G+ ++LV++
Sbjct: 269 KQVIVFASTKEAAQTITLILRNFS---YKTAVMHSDMQESERLKELEEFRAGRQRILVAT 325
Query: 393 DAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 445
D RG+D+ V+NV++++ P TY+HRAGRT RAG+ GR + E K
Sbjct: 326 DVAARGLDIPFVDNVIHFNPPQNAATYVHRAGRTGRAGREGRSILFVSGREKK 378
>gi|84686458|ref|ZP_01014352.1| ATP-dependent RNA helicase RhlE [Maritimibacter alkaliphilus
HTCC2654]
gi|84665641|gb|EAQ12117.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium
HTCC2654]
Length = 474
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 134/467 (28%), Positives = 210/467 (44%), Gaps = 85/467 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P++ A++ G + P+Q I P L RD+ + TG+GKT S+ LP++ L
Sbjct: 9 LSPKVLKAVEEAGYETPTPIQAGA----IPPALEGRDVLGIAQTGTGKTASFTLPMITML 64
Query: 95 S-NRA-VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
+ RA R R+LV+ PTR+LA QV + F A V L+ L +G
Sbjct: 65 ARGRARARMPRSLVLCPTRELAAQVAENFDTYAKHVKLTKALLIG--------------- 109
Query: 153 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLR 211
G+ + +D L + VD+L+ATPGRL+DH RG L + +VVDE DR+L
Sbjct: 110 ----GVSFKEQDQL--IDRGVDVLIATPGRLLDHFE--RGKLLLTGVQVMVVDEADRMLD 161
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
F+P +ER F P+ R +
Sbjct: 162 MG-------------------------FIPD------------IERIFGLVPFTRQT-LF 183
Query: 272 LSATLTQDPNKLAQLDLHHPLFL------TTGETRYKLPERLESYKLICESKLKPLYLVA 325
SAT+ + ++ L +P + TTGE + + ++ + + K L A
Sbjct: 184 FSATMASEIERITNTFLSNPARVEVARQATTGENIAQEVCKFKASRRDRAATEKRRLLRA 243
Query: 326 LLQSLGEE--KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 383
L+ GE I+F + + L +G I G QS R +TL+ FR+
Sbjct: 244 LIDREGEACTNAIIFCNRKMDVDVVAKSLKKYGYDAAPI---HGDLDQSKRMETLQGFRD 300
Query: 384 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443
G ++ LV+SD RG+DV V++V N+D P + + Y+HR GRT RAG+ G+ + +
Sbjct: 301 GTLRFLVASDVAARGLDVPAVSHVFNFDVPGHAEDYVHRIGRTGRAGRKGKAVMICEPRD 360
Query: 444 VKRF---KKLLQKA-DNDSCPIHSIPSSLIESLRPVYKSVRGGISDE 486
K ++L++K P+ P + E+ +P KS R SD+
Sbjct: 361 EKNLDAVERLIEKEIPRIESPLGDAP--VEETPKPEKKSARSKPSDK 405
>gi|398930681|ref|ZP_10664746.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM48]
gi|398164991|gb|EJM53115.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM48]
Length = 496
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 138/481 (28%), Positives = 209/481 (43%), Gaps = 81/481 (16%)
Query: 6 KKSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGP 65
K PV+PW V E H L P L A+Q++G P+Q V +G
Sbjct: 84 KPKAPVIPWKLEDFVVEPQEGKTRFHDFKLAPELMHAIQDLGFPYCTPIQAQV----LGF 139
Query: 66 GLFERDLCINSPTGSGKTLSYALPIVQTL------SNRAVRCLRALVVLPTRDLALQVKD 119
L +D + TG+GKT ++ + I+ L R + RAL++ PTR+L +Q+
Sbjct: 140 TLAGKDAIGRAQTGTGKTAAFLISIITQLLQTPPPKERYMGEPRALIIAPTRELVVQIAK 199
Query: 120 VFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179
A + GL+V VG ++ LEA C DILVAT
Sbjct: 200 DAADLTKYTGLNVMTFVGGMDFDKQLKH------LEARHC--------------DILVAT 239
Query: 180 PGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTF 239
PGRL+D N L+ + +V+DE DR+L ++P V Q+ R
Sbjct: 240 PGRLLD-FNQRGDVHLDMVEVMVLDEADRMLD---MGFIPQVRQIIR------------- 282
Query: 240 LPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET 299
+ P ++ SAT T+D LA+ P + E+
Sbjct: 283 --------------------QTPPKAERQTLLFSATFTEDVMNLAKQWTTDPSIVEI-ES 321
Query: 300 RYKLPERLES--YKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 357
+ E +E Y + K K LY L+ G E+ IVF + + R+ L G
Sbjct: 322 QNVANENVEQHIYAVAGADKYKLLY--NLVNDNGWERVIVFANRKDEVRRIEERLVRDG- 378
Query: 358 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417
I + SG Q R KTL+ FREGKI+VLV++D RG+ ++G+++V+N+ P
Sbjct: 379 --INAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEVPD 436
Query: 418 TYIHRAGRTARAGQLGRCFTLLHKDEVKRF----KKLLQKADNDSCPIHSIPSSLIESLR 473
Y+HR GRT RAG G + +D+ + +KL +K ++ P H + +E R
Sbjct: 437 DYVHRIGRTGRAGADGVSISFAGEDDSYQLPSIEEKLGRKISCETPPTHLL--RAVERKR 494
Query: 474 P 474
P
Sbjct: 495 P 495
>gi|237796237|ref|YP_002863789.1| DEAD/DEAH box family ATP-dependent RNA helicase [Clostridium
botulinum Ba4 str. 657]
gi|229263626|gb|ACQ54659.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum Ba4 str. 657]
Length = 524
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 114/432 (26%), Positives = 198/432 (45%), Gaps = 77/432 (17%)
Query: 24 FEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKT 83
E+ ++L + LK A+Q+MG F A+ +++I L D+ + TG+GKT
Sbjct: 1 MENKNFENLNLNEDVLK-AIQHMG----FETPSAIQEKSIPVVLEGADVIAQAQTGTGKT 55
Query: 84 LSYALPIVQTLSNRAVR-CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIA 142
L++ P++ L ++ + ++ALV+ PTR+LALQ+KD ++ V G SI
Sbjct: 56 LAFGAPVISALCDKEKKKGVKALVLTPTRELALQIKDELKRLSEYSKTKVLPVYGGESIE 115
Query: 143 DEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLV 202
+I ++++S VDI+V TPGR++DHIN R L + +L+
Sbjct: 116 RQI---------------------KDIKSGVDIVVGTPGRVLDHIN-RRTLKLGGIDFLI 153
Query: 203 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDK 262
+DE D +L + + T+++ T + +
Sbjct: 154 LDEADEMLNMGFIEDIETIMESTSEEKQT------------------------------- 182
Query: 263 PYPRLVKMVLSATLTQDPNKLA----QLDLHHPLFLTTGETRYKLPERLESYKLICESKL 318
M+ SAT+ + KLA + D+ H L T K+ + + K +K
Sbjct: 183 -------MLFSATMPEPIKKLALNYMKKDVEHIAILKKSLTVDKIAQNYFAVK----NKD 231
Query: 319 KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTL 378
K L ++ S E I+F + L + G ++ G Q+ R TL
Sbjct: 232 KLEALCRIIDSEEPESAIIFCRTKRGVDELVEAMQSKG---YNVEGMHGDMSQNQRINTL 288
Query: 379 KAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 438
K F++ + LV++D RG+DVE +++V+NYD P ++Y+HR GRT RA + G ++L
Sbjct: 289 KKFKKATLNFLVATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSL 348
Query: 439 LHKDEVKRFKKL 450
+ EV +++
Sbjct: 349 VTPREVSSIRQI 360
>gi|422835705|ref|ZP_16883758.1| ATP-dependent RNA helicase rhlE [Escherichia coli E101]
gi|371611884|gb|EHO00403.1| ATP-dependent RNA helicase rhlE [Escherichia coli E101]
Length = 454
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 127/430 (29%), Positives = 198/430 (46%), Gaps = 82/430 (19%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQT 93
L P + A+ G P+Q Q+ I P + E RDL ++ TG+GKT + LP++Q
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAI-PAVMEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 94 LSNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
L R R +RAL++ PTR+LA Q+ G V S I L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSL 107
Query: 149 IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDET 206
+ + G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE
Sbjct: 108 V----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEA 158
Query: 207 DRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPR 266
DR+L G + IRR P R
Sbjct: 159 DRML--------------------------------DMGFIHDIRRV-----LTKLPAKR 181
Query: 267 LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVAL 326
++ SAT + D LA+ LH+PL + R +++ + + K K L +
Sbjct: 182 Q-NLLFSATFSDDIKVLAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHM 239
Query: 327 LQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 386
+ ++ +VFT + + L LN G I+ G + Q R++ L F+ G I
Sbjct: 240 IGKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDI 296
Query: 387 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE--- 443
+VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356
Query: 444 VKRFKKLLQK 453
++ +KLL+K
Sbjct: 357 LRDIEKLLKK 366
>gi|227833123|ref|YP_002834830.1| ATP-dependent RNA helicase [Corynebacterium aurimucosum ATCC
700975]
gi|262182386|ref|ZP_06041807.1| putative ATP-dependent RNA helicase [Corynebacterium aurimucosum
ATCC 700975]
gi|227454139|gb|ACP32892.1| putative ATP-dependent RNA helicase [Corynebacterium aurimucosum
ATCC 700975]
Length = 430
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 118/415 (28%), Positives = 185/415 (44%), Gaps = 72/415 (17%)
Query: 43 LQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR-- 100
L GI++ FP+Q A + L +D+ PTGSGKT ++ LP++ L+ V
Sbjct: 17 LDKQGITTPFPIQEAAIPDA----LSGKDVLGRGPTGSGKTFTFGLPMLSRLAASGVSRP 72
Query: 101 -CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 159
R LV+ PTR+LA Q++ A A+GL V VG +I + I L RP
Sbjct: 73 AHPRGLVLAPTRELATQIQQRLEEPAAALGLRVLAVVGGVNINNHIRSL-ARP------- 124
Query: 160 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 219
VD+LVATPGR D I+ + F +H+ +DE D++ + +
Sbjct: 125 -------------VDLLVATPGRAQDLIDQGKLF-FDHVAIAALDEADQMADMGFLPQVR 170
Query: 220 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 279
+L+LT + + +++ SATL +
Sbjct: 171 KLLKLTPEEGQ--------------------------------------RLLFSATLDGE 192
Query: 280 PNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFT 339
NKL + +H P+ +T + + +E + LI + V L + K I+F
Sbjct: 193 VNKLVEQFMHEPVTHSTAPVEAAV-DTME-HHLIFIGTREARNDVVLRLGARKGKTIMFM 250
Query: 340 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 399
+ R L G I G + Q R+K ++ F +G + VLV++D RG+
Sbjct: 251 RTKHGVDRQAKKLRRVG---INALPLHGDKGQGSRTKAIEGFADGSVPVLVATDIAARGI 307
Query: 400 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 454
D+ V+ VV+ D PA K Y+HR+GRTAR G+ G TL+ ++ KL+ KA
Sbjct: 308 DIADVSLVVHVDPPAEHKAYLHRSGRTARGGESGTVVTLVTDEQRDEVAKLIAKA 362
>gi|168180793|ref|ZP_02615457.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum NCTC 2916]
gi|226950212|ref|YP_002805303.1| DEAD/DEAH box family ATP-dependent RNA helicase [Clostridium
botulinum A2 str. Kyoto]
gi|182668220|gb|EDT80199.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum NCTC 2916]
gi|226841562|gb|ACO84228.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum A2 str. Kyoto]
Length = 524
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 115/432 (26%), Positives = 198/432 (45%), Gaps = 77/432 (17%)
Query: 24 FEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKT 83
E+ ++L + LK A+Q+MG F A+ +++I L D+ + TG+GKT
Sbjct: 1 MENKNFENLNLNEDVLK-AIQHMG----FETPSAIQEKSIPVVLEGADVIAQAQTGTGKT 55
Query: 84 LSYALPIVQTLSNR-AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIA 142
L++ P++ L ++ + ++ALV+ PTR+LALQ+KD ++ V G SI
Sbjct: 56 LAFGAPVISALCDKEKKKGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVYGGESIE 115
Query: 143 DEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLV 202
+I ++++S VDI+V TPGR++DHIN R L + +LV
Sbjct: 116 RQI---------------------KDIKSGVDIVVGTPGRVLDHIN-RRTLKLGGIDFLV 153
Query: 203 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDK 262
+DE D +L + + T+++ T + +
Sbjct: 154 LDEADEMLNMGFIEDIETIMESTSEEKQT------------------------------- 182
Query: 263 PYPRLVKMVLSATLTQDPNKLA----QLDLHHPLFLTTGETRYKLPERLESYKLICESKL 318
M+ SAT+ + KLA + D+ H L T K+ + + K +K
Sbjct: 183 -------MLFSATMPEPIKKLALNYMKKDVEHIAILKKSLTVDKIAQNYFAVK----NKD 231
Query: 319 KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTL 378
K L ++ S E I+F + L + G ++ G Q+ R TL
Sbjct: 232 KLEALCRIIDSEEPESAIIFCRTKRGVDELVEAMQSKG---YNVEGMHGDMSQNQRINTL 288
Query: 379 KAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 438
K F++ + LV++D RG+DVE +++V+NYD P ++Y+HR GRT RA + G ++L
Sbjct: 289 KKFKKATLNFLVATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSL 348
Query: 439 LHKDEVKRFKKL 450
+ EV +++
Sbjct: 349 VTPREVSSIRQI 360
>gi|204929853|ref|ZP_03220874.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Javiana str. GA_MM04042433]
gi|452120973|ref|YP_007471221.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Javiana str. CFSAN001992]
gi|204320847|gb|EDZ06048.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Javiana str. GA_MM04042433]
gi|451909977|gb|AGF81783.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Javiana str. CFSAN001992]
Length = 453
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 125/429 (29%), Positives = 196/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQ-- 92
L+P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q
Sbjct: 8 LNPDILRAIAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 93 ---TLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
L + R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITHQLHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 160 RML--------------------------------DMGFIHDIRRV-----LAKLPAKRQ 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ L +PL + R E++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLRNPLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GQGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|398872243|ref|ZP_10627544.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM74]
gi|398203843|gb|EJM90658.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM74]
Length = 496
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 138/481 (28%), Positives = 209/481 (43%), Gaps = 81/481 (16%)
Query: 6 KKSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGP 65
K PV+PW V E H L P L A+Q++G P+Q V +G
Sbjct: 84 KPKAPVIPWKLEDFVVEPQEGKTRFHDFKLAPELMHAIQDLGFPYCTPIQAQV----LGF 139
Query: 66 GLFERDLCINSPTGSGKTLSYALPIVQTL------SNRAVRCLRALVVLPTRDLALQVKD 119
L +D + TG+GKT ++ + I+ L R + RAL++ PTR+L +Q+
Sbjct: 140 TLAGKDAIGRAQTGTGKTAAFLISIITQLLQTPPPKERYMGEPRALIIAPTRELVVQIAK 199
Query: 120 VFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179
A + GL+V VG ++ LEA C DILVAT
Sbjct: 200 DAADLTKYTGLNVMTFVGGMDFDKQLKH------LEARHC--------------DILVAT 239
Query: 180 PGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTF 239
PGRL+D N L+ + +V+DE DR+L ++P V Q+ R
Sbjct: 240 PGRLLD-FNQRGDVHLDMVEVMVLDEADRMLD---MGFIPQVRQIIR------------- 282
Query: 240 LPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET 299
+ P ++ SAT T+D LA+ P + E+
Sbjct: 283 --------------------QTPPKSERQTLLFSATFTEDVMNLAKQWTTDPSIVEI-ES 321
Query: 300 RYKLPERLES--YKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 357
+ E +E Y + K K LY L+ G E+ IVF + + R+ L G
Sbjct: 322 QNVANENVEQHIYAVAGADKYKLLY--NLVNDNGWERVIVFANRKDEVRRIEERLVRDG- 378
Query: 358 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417
I + SG Q R KTL+ FREGKI+VLV++D RG+ ++G+++V+N+ P
Sbjct: 379 --INAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEVPD 436
Query: 418 TYIHRAGRTARAGQLGRCFTLLHKDEVKRF----KKLLQKADNDSCPIHSIPSSLIESLR 473
Y+HR GRT RAG G + +D+ + +KL +K ++ P H + +E R
Sbjct: 437 DYVHRIGRTGRAGADGVSISFAGEDDSYQLPSIEEKLGRKISCETPPTHLL--RAVERKR 494
Query: 474 P 474
P
Sbjct: 495 P 495
>gi|24112165|ref|NP_706675.1| ATP-dependent RNA helicase RhlE [Shigella flexneri 2a str. 301]
gi|30062282|ref|NP_836453.1| ATP-dependent RNA helicase RhlE [Shigella flexneri 2a str. 2457T]
gi|110804797|ref|YP_688317.1| ATP-dependent RNA helicase RhlE [Shigella flexneri 5 str. 8401]
gi|384542336|ref|YP_005726398.1| putative ATP-dependent RNA helicase [Shigella flexneri 2002017]
gi|415854782|ref|ZP_11530368.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri 2a str.
2457T]
gi|417706409|ref|ZP_12355465.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri VA-6]
gi|417721811|ref|ZP_12370653.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-304]
gi|417727186|ref|ZP_12375928.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-671]
gi|417732356|ref|ZP_12381025.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri
2747-71]
gi|417737649|ref|ZP_12386250.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri
4343-70]
gi|417742288|ref|ZP_12390838.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Shigella flexneri 2930-71]
gi|420330111|ref|ZP_14831808.1| ATP-dependent RNA helicase rhlE [Shigella flexneri K-1770]
gi|420340408|ref|ZP_14841932.1| ATP-dependent RNA helicase rhlE [Shigella flexneri K-404]
gi|424837260|ref|ZP_18261897.1| ATP-dependent RNA helicase RhlE [Shigella flexneri 5a str. M90T]
gi|24051003|gb|AAN42382.1| putative ATP-dependent RNA helicase [Shigella flexneri 2a str. 301]
gi|30040527|gb|AAP16259.1| putative ATP-dependent RNA helicase [Shigella flexneri 2a str.
2457T]
gi|110614345|gb|ABF03012.1| putative ATP-dependent RNA helicase [Shigella flexneri 5 str. 8401]
gi|281600121|gb|ADA73105.1| putative ATP-dependent RNA helicase [Shigella flexneri 2002017]
gi|313650305|gb|EFS14717.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri 2a str.
2457T]
gi|332759696|gb|EGJ89999.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri
4343-70]
gi|332760467|gb|EGJ90756.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri
2747-71]
gi|332763287|gb|EGJ93529.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-671]
gi|332767959|gb|EGJ98145.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Shigella flexneri 2930-71]
gi|333006587|gb|EGK26086.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri VA-6]
gi|333021182|gb|EGK40438.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-304]
gi|383466312|gb|EID61333.1| ATP-dependent RNA helicase RhlE [Shigella flexneri 5a str. M90T]
gi|391258157|gb|EIQ17263.1| ATP-dependent RNA helicase rhlE [Shigella flexneri K-1770]
gi|391272965|gb|EIQ31794.1| ATP-dependent RNA helicase rhlE [Shigella flexneri K-404]
Length = 406
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 126/429 (29%), Positives = 196/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 160 RML--------------------------------DMGFIHDIRRV-----LTKLPAKRQ 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSVAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|46581491|ref|YP_012299.1| DEAD/DEAH box helicase [Desulfovibrio vulgaris str. Hildenborough]
gi|120601341|ref|YP_965741.1| DEAD/DEAH box helicase [Desulfovibrio vulgaris DP4]
gi|387154696|ref|YP_005703632.1| DEAD/DEAH box helicase [Desulfovibrio vulgaris RCH1]
gi|46450913|gb|AAS97559.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Desulfovibrio
vulgaris str. Hildenborough]
gi|120561570|gb|ABM27314.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris DP4]
gi|311235140|gb|ADP87994.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris RCH1]
Length = 577
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 126/435 (28%), Positives = 194/435 (44%), Gaps = 82/435 (18%)
Query: 26 DCPLDHLPC-----LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFE-RDLCINSPTG 79
D P D LP L PRL+ A G SL PVQ P LF+ RDL + S TG
Sbjct: 30 DEPEDALPSVQFADLAPRLQEACIRAGWQSLMPVQAHAL-----PYLFDGRDLMVQSRTG 84
Query: 80 SGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQS 139
SGKT ++ LP+++ L + A +ALV++PTR+LALQV+ + GL V G
Sbjct: 85 SGKTGAFLLPLLERL-DPAEASTQALVLVPTRELALQVEHEARTLFEGTGLRVAAVYG-- 141
Query: 140 SIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLC 199
G+ Y ++ L+ +V TPGR++DH+ R L+ L
Sbjct: 142 -----------------GVGYGKQN--DALREGAHFVVGTPGRVLDHL-LRRTMQLDRLR 181
Query: 200 YLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGF 259
L DE DR+L + + +K I+R
Sbjct: 182 ALTFDEADRMLSIGF-----------------------------YPDMKEIQRY------ 206
Query: 260 KDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL- 318
P R+ + SAT LA L P L+ ++ + ++ + CESK
Sbjct: 207 --LPKRRIATCLFSATYPPHVLNLAGEFLREPQMLSLSHSQVHV---AQTQHMFCESKPM 261
Query: 319 -KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKT 377
K L+ LL+ I+F ++ + H + +L FG E S QS R +
Sbjct: 262 DKDRALIRLLEIENPSSAIIFCNTKANVHYITAVLQGFG---YNADELSADLSQSKREQV 318
Query: 378 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFT 437
L+ R +++ LV++D RG+D+ +++V+ Y+ P ++YIHRAGRT RAG +G +
Sbjct: 319 LERLRNNEVRFLVATDVAARGIDIPALSHVILYEPPEDRESYIHRAGRTGRAGAVGTVIS 378
Query: 438 L---LHKDEVKRFKK 449
L + K E++R +
Sbjct: 379 LVDIMQKLELQRIAR 393
>gi|357618886|gb|EHJ71689.1| hypothetical protein KGM_12880 [Danaus plexippus]
Length = 533
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 117/414 (28%), Positives = 180/414 (43%), Gaps = 74/414 (17%)
Query: 43 LQNMGISSLFPVQVAVWQETIGPGLFERDLCINSP-TGSGKTLSYALPIVQTLSNRAVRC 101
L +GI + P+Q P + CI + TGSGKT ++ALPI+Q L+
Sbjct: 22 LITLGIKTPTPIQKGCI-----PNILSGQDCIGAAKTGSGKTFAFALPILQNLAEDPYGI 76
Query: 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD 161
ALV+ PT +LA Q+ D F + + L V + G S +E +L KRP
Sbjct: 77 F-ALVLTPTHELAYQIADQFLILGQPLKLRVCIVTGGSDQLEESLKLAKRPH-------- 127
Query: 162 PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 221
I+VA PGRL DHI+ F+L+ + YLV+DE DRL E++ L T+
Sbjct: 128 -------------IVVAMPGRLADHISGCDTFSLKKIKYLVLDEADRLFSESFTGDLETI 174
Query: 222 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 281
+ +N ++ SAT+T+D
Sbjct: 175 FEALPQKRQN--------------------------------------LLFSATITEDVK 196
Query: 282 KLAQLDLHHPLFLTTGETRYKLP-ERLESYKLICESKLKPLYLVALLQSLGE----EKCI 336
+ L L+ T +T L L+ ++C + + +YLV L+ E I
Sbjct: 197 ESKVLSLNKDNLSTWCDTDTTLTVSTLDQRYVVCPAYARDVYLVQTLRKYREGAPSSHVI 256
Query: 337 VFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT 396
VFT + + L +L G + + G RQ R L FR L++++
Sbjct: 257 VFTDTKKECQVLSMMLADIGMDNVCL---HGFMRQKERVSALAQFRSNLKCTLIATNVAA 313
Query: 397 RGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
RG+D+ V+ VVN+ P K YIHR GRTARAG+ G +++ ++ R ++
Sbjct: 314 RGLDIPSVDLVVNHKLPLEPKEYIHRVGRTARAGRSGMAISIITPYDILRLGEI 367
>gi|91785132|ref|YP_560338.1| ATP-dependent RNA helicase 1 [Burkholderia xenovorans LB400]
gi|91689086|gb|ABE32286.1| Putative ATP-dependent RNA helicase 1 [Burkholderia xenovorans
LB400]
Length = 543
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 119/429 (27%), Positives = 190/429 (44%), Gaps = 76/429 (17%)
Query: 29 LDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL 88
D L +P ++ A+ +G ++ P+Q + G DL + TG+GKT + L
Sbjct: 25 FDSLGLSEPLVR-AVHELGYTTPTPIQTQAIPAVLNGG----DLLAGAQTGTGKTAGFTL 79
Query: 89 PIVQTLSNRAV-------RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSI 141
PI+Q L++ R +RAL++ PTR+LA QV++ A + L + G
Sbjct: 80 PILQRLNSSPAVANGSGKRAVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFG---- 135
Query: 142 ADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYL 201
G+ +P+ + L+S VDI+VATPGRL+DH+ + L HL L
Sbjct: 136 ---------------GVGINPQ--IGALRSGVDIVVATPGRLLDHMQ-QKTIDLSHLEIL 177
Query: 202 VVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKD 261
V+DE DR+L + + VL LP
Sbjct: 178 VLDEADRMLDMGFIHDIKRVL---------------AKLP-------------------- 202
Query: 262 KPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPL 321
P+ ++ SAT + + LA L P + + + K + L
Sbjct: 203 ---PKRQNLLFSATFSDEIKTLADNLLDSPALIEVARRNTTAETVAQKIHPVDRDKKREL 259
Query: 322 YLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 381
L L++ + +VFT + +RL L G I G + QS R++ L F
Sbjct: 260 -LTHLIKQHNWFQVLVFTRTKHGANRLAEQLTKDG---ISALAIHGNKSQSARTRALAEF 315
Query: 382 REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK 441
++G +QVLV++D RG+D++ + +VVNYD P + Y+HR GRT RAG G +L+
Sbjct: 316 KDGTLQVLVATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCV 375
Query: 442 DEVKRFKKL 450
DE++ K +
Sbjct: 376 DELQLLKDI 384
>gi|187778617|ref|ZP_02995090.1| hypothetical protein CLOSPO_02212 [Clostridium sporogenes ATCC
15579]
gi|387819068|ref|YP_005679415.1| cold-shock DEAD-box protein A [Clostridium botulinum H04402 065]
gi|187772242|gb|EDU36044.1| DEAD/DEAH box helicase [Clostridium sporogenes ATCC 15579]
gi|322807112|emb|CBZ04686.1| cold-shock DEAD-box protein A [Clostridium botulinum H04402 065]
Length = 524
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 119/434 (27%), Positives = 202/434 (46%), Gaps = 81/434 (18%)
Query: 24 FEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKT 83
E+ ++L + LK A+Q+MG F A+ +++I L D+ + TG+GKT
Sbjct: 1 MENKNFENLNLNEDVLK-AIQHMG----FETPSAIQEKSIPVVLEGADVIAQAQTGTGKT 55
Query: 84 LSYALPIVQTLSNRAVR-CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIA 142
L++ P++ TL + + ++ALV+ PTR+LALQ+KD ++ V G SI
Sbjct: 56 LAFGAPVISTLCDEGKKKGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVYGGESIE 115
Query: 143 DEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLV 202
+I ++++S VDI+V TPGR++DHIN R L + +LV
Sbjct: 116 RQI---------------------KDIKSGVDIVVGTPGRVLDHIN-RRTLKLGGIDFLV 153
Query: 203 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDK 262
+DE D +L + + T++ T + + A+ P I++ + KD
Sbjct: 154 LDEADEMLNMGFIEDIETIMASTPEEKQTMLFSATMPAP--------IKKLALNYMKKDV 205
Query: 263 PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKL------PERLESYKLICES 316
+ ++K L+ +K+AQ H+ F + + + E ES + C +
Sbjct: 206 EHIAILKKSLTV------DKIAQ---HY--FAVKNKDKLEAICRIIDSEEPESAIIFCRT 254
Query: 317 KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSK 376
K LV +QS G +VE H G Q+ R
Sbjct: 255 KRGVDELVEAMQSKG--------YNVEGMH--------------------GDMSQNQRIN 286
Query: 377 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCF 436
TLK F++ + LV++D RG+DVE +++V+NYD P ++Y+HR GRT RA + G +
Sbjct: 287 TLKKFKKATLNFLVATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAY 346
Query: 437 TLLHKDEVKRFKKL 450
+L+ EV +++
Sbjct: 347 SLVTPREVSSIRQI 360
>gi|114771836|ref|ZP_01449229.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium
HTCC2255]
gi|114547652|gb|EAU50543.1| ATP-dependent RNA helicase RhlE [alpha proteobacterium HTCC2255]
Length = 461
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 128/429 (29%), Positives = 195/429 (45%), Gaps = 83/429 (19%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P++ A+ ++G + P+Q E I L RD+ + TG+GKT + LP++ L
Sbjct: 9 LSPKVMKAINDVGYDTPTPIQ----SEAIPHALEGRDVLGIAQTGTGKTAGFTLPMIHKL 64
Query: 95 S-NRA-VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
+ RA R R+LV+ PTR+LA QV + F A V L + L +G
Sbjct: 65 ARGRARARMPRSLVLAPTRELAAQVAENFEQYAKYVKLDMALLIG--------------- 109
Query: 153 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLR 211
G+ + +D L + VD+L+ATPGRL+DH RG L + +VVDE DR+L
Sbjct: 110 ----GVSFKDQDRL--IDRGVDVLIATPGRLLDHFE--RGKLLLTGIEIMVVDEADRMLD 161
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
F+P +ER FK P+ R +
Sbjct: 162 MG-------------------------FIPD------------IERIFKLTPFTRQT-LF 183
Query: 272 LSATLTQDPNKLAQLDLHHPLFL------TTGE--TRYKLPERLESYKLICESKLKPLYL 323
SAT+ + N++ Q L +P + TT E T+ + + E+ KL E+K K L
Sbjct: 184 FSATMAPEINRITQEFLQNPKLVEVARQATTSENITQNVICFKAENRKL--EAKKKRDLL 241
Query: 324 VALLQSLGEE--KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 381
+++ GE+ IVF + + L G + G Q R + L F
Sbjct: 242 RTIIKDEGEKLTNGIVFCNRKVDVDIVMKSLKKHGH---SVGAIHGDLDQRYRMEVLAGF 298
Query: 382 REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK 441
+ I +LV+SD RG+D+ V++V N+D P + + Y+HR GRT RAG+ G F L
Sbjct: 299 KNNDITLLVASDVAARGLDIPAVSHVFNFDVPIHAEDYVHRIGRTGRAGRKGWAFMLCLP 358
Query: 442 DEVKRFKKL 450
E+K K+
Sbjct: 359 HEIKHLDKI 367
>gi|451940595|ref|YP_007461233.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bartonella
australis Aust/NH1]
gi|451899982|gb|AGF74445.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bartonella
australis Aust/NH1]
Length = 468
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 122/426 (28%), Positives = 206/426 (48%), Gaps = 76/426 (17%)
Query: 26 DCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLS 85
DC D+L L ++ A++++G + P+Q ETI L ++D+ + TG+GKT S
Sbjct: 6 DC-FDNL-GLSSKVIKAVKSVGYTIPTPIQ----SETIPHVLQKKDVLGIAQTGTGKTAS 59
Query: 86 YALPIVQTLSN-RA-VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIAD 143
+ LP++ L RA R R L+++PTR+LA QVK+ F L+V L +G
Sbjct: 60 FVLPMLTLLEKGRARARMPRTLILVPTRELAAQVKENFDKYGMNHRLNVALLIG------ 113
Query: 144 EISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLV 202
G+ ++ +D ++L+ D+L+ATPGRL+DH RG L + LV
Sbjct: 114 -------------GVSFEHQD--RKLERGTDVLIATPGRLLDHFE--RGKLLLVGVEILV 156
Query: 203 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDK 262
+DE DR+L F+P +ER +
Sbjct: 157 IDEADRMLDMG-------------------------FIPD------------IERICRLT 179
Query: 263 PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLY 322
P+ R + SAT+ + KL + LH P+++ T+ + R + +L+ +S KP
Sbjct: 180 PFTRQT-LFFSATMAPEIAKLTEQFLHSPVYIEI--TKEFVTARTITQRLV-KSGSKPWD 235
Query: 323 LVALLQSLGEEKCIVFTSSVESTHR---LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLK 379
A+L+ L ++ +++ +R + L + + G Q R+ TL
Sbjct: 236 KRAILRGLIHDEGDKLKNAIIFCNRKKDISELFRSLVKYNFSVGALHGDMDQHTRTSTLA 295
Query: 380 AFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439
F++GKI +L++SD RG+D+ V+++ NYD P + + YIHR GRT RA + G+ FT++
Sbjct: 296 NFKDGKITLLIASDVAARGLDIPAVSHIFNYDVPTHAEDYIHRIGRTGRAKRSGKAFTIV 355
Query: 440 HKDEVK 445
+ + K
Sbjct: 356 TQADEK 361
>gi|168183134|ref|ZP_02617798.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum Bf]
gi|182673701|gb|EDT85662.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum Bf]
Length = 524
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 114/432 (26%), Positives = 198/432 (45%), Gaps = 77/432 (17%)
Query: 24 FEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKT 83
E+ ++L + LK A+Q+MG F A+ +++I L D+ + TG+GKT
Sbjct: 1 MENKNFENLNLNEDVLK-AIQHMG----FETPSAIQEKSIPVVLEGADVIAQAQTGTGKT 55
Query: 84 LSYALPIVQTLSNRAVR-CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIA 142
L++ P++ L ++ + ++ALV+ PTR+LALQ+KD ++ V G SI
Sbjct: 56 LAFGAPVISALCDKEKKKGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVYGGESIE 115
Query: 143 DEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLV 202
+I ++++S VDI+V TPGR++DHIN R L + +L+
Sbjct: 116 RQI---------------------KDIKSGVDIVVGTPGRVLDHIN-RRTLKLGGIDFLI 153
Query: 203 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDK 262
+DE D +L + + T+++ T + +
Sbjct: 154 LDEADEMLNMGFIEDIETIMESTSEEKQT------------------------------- 182
Query: 263 PYPRLVKMVLSATLTQDPNKLA----QLDLHHPLFLTTGETRYKLPERLESYKLICESKL 318
M+ SAT+ + KLA + D+ H L T K+ + + K +K
Sbjct: 183 -------MLFSATMPEPIKKLALNYMKKDVEHIAILKKSLTVDKIAQNYFAVK----NKD 231
Query: 319 KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTL 378
K L ++ S E I+F + L + G ++ G Q+ R TL
Sbjct: 232 KLEALCRIIDSEEPESAIIFCRTKRGVDELVEAMQSKG---YNVEGMHGDMSQNQRINTL 288
Query: 379 KAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 438
K F++ + LV++D RG+DVE +++V+NYD P ++Y+HR GRT RA + G ++L
Sbjct: 289 KKFKKATLNFLVATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSL 348
Query: 439 LHKDEVKRFKKL 450
+ EV +++
Sbjct: 349 VTPREVSSIRQI 360
>gi|60649461|gb|AAH91696.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Rattus norvegicus]
Length = 323
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 89/276 (32%), Positives = 141/276 (51%), Gaps = 42/276 (15%)
Query: 175 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 234
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 13 IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK---- 68
Query: 235 DASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL 294
TFL SAT+T+ KL + L +P+
Sbjct: 69 ---TFL-------------------------------FSATMTKKVQKLQRAALKNPVKC 94
Query: 295 TTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNH 354
++Y+ E+L+ Y L SK K YLV +L L ++F S+ +T R LL +
Sbjct: 95 AVS-SKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRN 153
Query: 355 FGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA 414
G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D P
Sbjct: 154 LGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPT 210
Query: 415 YIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
+ K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 211 HSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 246
>gi|197265494|ref|ZP_03165568.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA23]
gi|197243749|gb|EDY26369.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA23]
Length = 453
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 124/429 (28%), Positives = 197/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LNPDILRAIAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 -----SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
+ R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITHQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR + K +
Sbjct: 160 RML--------------------------------DMGFIHDIRRVLAKLPAKRQ----- 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ L +PL + R E++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLRNPLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GQGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|375264486|ref|YP_005021929.1| ATP-dependent RNA helicase SrmB [Vibrio sp. EJY3]
gi|369839810|gb|AEX20954.1| ATP-dependent RNA helicase SrmB [Vibrio sp. EJY3]
Length = 407
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 135/425 (31%), Positives = 198/425 (46%), Gaps = 78/425 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LD L A++ MG VQ E I L RD+ ++PTG+GKT ++ LP +Q L
Sbjct: 10 LDSNLLDAIEEMGFERPTKVQA----EAIPQALDGRDILASAPTGTGKTAAFVLPALQYL 65
Query: 95 SN---RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
+ R R L++ PTR+LA+QV D A+A L++ G
Sbjct: 66 QDFPRRKPGPARILILTPTRELAMQVADQARALAKNTKLNIFTITG-------------- 111
Query: 152 PKLEAGICY-DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 210
G+ Y + D+L Q DI+VATPGRL ++I A R F + +L++DE DR+L
Sbjct: 112 -----GVQYQEHADILATTQ---DIVVATPGRLREYIEAER-FDCRAIEWLILDEADRML 162
Query: 211 REAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270
+ PTV +L+ NE R+ T L SA T+ GVE GF
Sbjct: 163 DMGFA---PTVDRLS---NECRWR-KQTLLFSA-----TLEGRGVE-GF----------- 198
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL 330
+A L +P A++D PL R K+ + E KL L + Q+
Sbjct: 199 --TADLLNEP---AEIDAKSPL-----RERKKIAQWYHRAD-DAEHKLALLKHIITEQA- 246
Query: 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 390
E+ IVF + E RL L + +I G Q R+ + FR+G + VL+
Sbjct: 247 --ERTIVFLKTRE---RLAELRSQLESAQIPCSWIQGEMPQDRRNNAIARFRDGTVNVLL 301
Query: 391 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK------DEV 444
++D RG+D+ V++V+NYD P Y+HR GRTARAG+ G +++ D V
Sbjct: 302 ATDVAARGIDLPDVSHVINYDLPRTADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDRV 361
Query: 445 KRFKK 449
R+ K
Sbjct: 362 ARYVK 366
>gi|333916134|ref|YP_004489866.1| DEAD/DEAH box helicase domain-containing protein [Delftia sp.
Cs1-4]
gi|333746334|gb|AEF91511.1| DEAD/DEAH box helicase domain protein [Delftia sp. Cs1-4]
Length = 504
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 129/446 (28%), Positives = 202/446 (45%), Gaps = 91/446 (20%)
Query: 39 LKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL---- 94
L A+ +MG S+ P+Q + I L +D+ + TG+GKT +++LP++Q L
Sbjct: 14 LARAVADMGYESMTPIQA----QAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQRLMRHE 69
Query: 95 ---SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
++ A +RALV+LPTR+LA QV A +I++ K
Sbjct: 70 NTSASPARHPVRALVLLPTRELADQV------------------------AQQIAQYAKY 105
Query: 152 PKLEAGICYDPEDV---LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208
KL + + + D+ EL+ V++LVATPGRL+DHI A + L + Y+V+DE DR
Sbjct: 106 TKLRSTVVFGGMDMKPQTLELKKGVEVLVATPGRLLDHIEA-KNAVLNQVEYVVLDEADR 164
Query: 209 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLV 268
+L FLP ++R P R
Sbjct: 165 MLDIG-------------------------FLPD------------LQRILSHLPKTRTT 187
Query: 269 KMVLSATLTQDPNKLAQLDLHHPLFLTTG---ETRYKLPERLESYKLICESKLKPLYLVA 325
++ SAT + + +LA L P+ + ET + +R S K L +
Sbjct: 188 -LLFSATFSPEIKRLASSYLQDPVTIEVARPNETASTVEQRFYS----VSDDDKRYALRS 242
Query: 326 LLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 385
LL+ + VF++S RL L G ++ G + Q R K L+AF+ G+
Sbjct: 243 LLKQRDIRQAFVFSNSKLGCARLTRALERDG---LRATALHGDKSQDERLKALEAFKRGE 299
Query: 386 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE-- 443
+ +LV +D RG+D++ V V NYD P + Y+HR GRT RAG G TL+ +
Sbjct: 300 VDLLVCTDVAARGLDIKDVPAVFNYDVPFNAEDYVHRIGRTGRAGASGIAVTLVTNHDAR 359
Query: 444 -VKRFKKLLQKADN-DSCPIHSIPSS 467
V +KL++K N ++CP+ S
Sbjct: 360 LVGEIEKLIKKKINVEACPMEDFRGS 385
>gi|16758984|ref|NP_445977.1| probable ATP-dependent RNA helicase DDX52 [Rattus norvegicus]
gi|34582286|sp|Q99PT0.1|DDX52_RAT RecName: Full=Probable ATP-dependent RNA helicase DDX52; AltName:
Full=ATP-dependent RNA helicase ROK1-like; Short=rROK1L;
AltName: Full=DEAD box protein 52
gi|12862376|dbj|BAB32441.1| ROK1-like protein [Rattus norvegicus]
gi|149053684|gb|EDM05501.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 [Rattus norvegicus]
Length = 598
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 126/448 (28%), Positives = 199/448 (44%), Gaps = 70/448 (15%)
Query: 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSP 77
P ++ F+ LD + PRL LQN+ + + F V + + I L R+L ++P
Sbjct: 158 PDPIATFQQ--LDQEYKISPRL---LQNI-LDAGFQVPTPIQMQAIPVMLHGRELLASAP 211
Query: 78 TGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVG 137
TGSGKTL++++PI+ L + RALV+ PTR+LA Q+ I+ G + + +
Sbjct: 212 TGSGKTLAFSIPILMQLKQPTNKGFRALVISPTRELASQIHRELIKISEGTGFRIHM-IH 270
Query: 138 QSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR-GFTLE 196
+++IA + + P+ DILV TP RL+ + G L
Sbjct: 271 KAAIAAK--------------KFGPKS-----SKKFDILVTTPNRLIYLLKQEPPGIDLT 311
Query: 197 HLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSD--ASTFLPSAFGSLKTIRRCG 254
+ +LVVDE+D+L D + F D AS FL
Sbjct: 312 SVEWLVVDESDKLF----------------EDGKTGFRDQLASIFLACT----------- 344
Query: 255 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC 314
P++ + + SAT D + +L+L + + ++ G R E +E L
Sbjct: 345 ---------SPKVRRAMFSATFAYDVEQWCKLNLDNIVSVSIG-ARNSAVETVEQELLFV 394
Query: 315 ESKL-KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSV 373
S+ K L + L++ +VF S+E L L + G I + + Q
Sbjct: 395 GSETGKLLAMRELVKKGFNPPVLVFVQSIERAKELFHELIYEG---INVDVIHAERTQQQ 451
Query: 374 RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 433
R T+ +FR GKI VL+ + + RG+D +GVN V+NYD P YIHR GRT RAG G
Sbjct: 452 RDNTVHSFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNRG 511
Query: 434 RCFTLLHKDEVKRFKKLLQKADNDSCPI 461
+ T +D+ + + CP+
Sbjct: 512 KAVTFFTEDDKPLLRSVANVIQQAGCPV 539
>gi|445268473|ref|ZP_21410195.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Enteritidis str. 436]
gi|444888135|gb|ELY11755.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Enteritidis str. 436]
Length = 452
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 124/429 (28%), Positives = 197/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LNPDILRAIAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 -----SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
+ R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITHQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR + K +
Sbjct: 160 RML--------------------------------DMGFIHDIRRVLAKLPAKRQ----- 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ L +PL + R E++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLRNPLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GQGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|319405816|emb|CBI79446.1| ATP-dependent RNA helicase [Bartonella sp. AR 15-3]
Length = 465
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 122/416 (29%), Positives = 196/416 (47%), Gaps = 86/416 (20%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-RA-V 99
A+++ G + P+Q TI L +RD+ + TG+GKT S+ LP++ L RA
Sbjct: 20 AIKSAGYTIPTPIQSG----TIPHILQKRDILGIAQTGTGKTASFVLPMLTLLEKGRARA 75
Query: 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 159
R R L++ PTR+LA QV++ F L+V L +G G+
Sbjct: 76 RIPRTLILEPTRELATQVQENFDKYGVNHNLNVALLIG-------------------GVS 116
Query: 160 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 219
++ +D ++L+ D+L+ATPGRL+DH + L + LV+DE DR+L
Sbjct: 117 FEQQD--RKLERGADVLIATPGRLLDHFEHGK-LLLLGIEILVIDEADRMLDMG------ 167
Query: 220 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 279
F+P+ +ER K P+ R + SAT+ +
Sbjct: 168 -------------------FIPN------------IERICKLTPFTRQT-LFFSATMAPE 195
Query: 280 PNKLAQLDLHHPLFL---TTGETRYKLPERLESYKLICESKLKPLYLVALLQSL----GE 332
KL + LH P+++ T K+ +RL +S KP A+L+ L G+
Sbjct: 196 ITKLTKQFLHSPVYIEITKASSTAKKITQRL------VKSGSKPWDKRAILRELIHKEGD 249
Query: 333 E--KCIVFTSSVESTHRLC-TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 389
E I+F + + L +L+ H + G Q R+ TL F++ K+ +L
Sbjct: 250 ELKNAIIFCNRKKDISELVRSLIKH----NFSVGTLHGDMDQHSRTSTLANFKDNKLTLL 305
Query: 390 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 445
V+SD +RG+D+ V++V NYD P + + YIHR GRT RA + G+ FT++ K + K
Sbjct: 306 VASDVASRGLDIPAVSHVFNYDVPTHAEDYIHRIGRTGRAKRSGKAFTIVTKADEK 361
>gi|432860541|ref|ZP_20085680.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE146]
gi|431407525|gb|ELG90736.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE146]
Length = 463
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 125/429 (29%), Positives = 196/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 -----SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
+ R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITCQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 160 RML--------------------------------DMGFIHDIRRV-----LTKLPAKRQ 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKNLAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|417509372|ref|ZP_12174654.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Senftenberg str. A4-543]
gi|353649195|gb|EHC91885.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Senftenberg str. A4-543]
Length = 444
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 124/429 (28%), Positives = 197/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LNPDILRAIAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 -----SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
+ R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITHQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR + K +
Sbjct: 160 RML--------------------------------DMGFIHDIRRVLAKLPAKRQ----- 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ L +PL + R E++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLRNPLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GQGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|238913888|ref|ZP_04657725.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
Length = 455
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 124/429 (28%), Positives = 197/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LNPDILRAIAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 -----SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
+ R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITHQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR + K +
Sbjct: 160 RML--------------------------------DMGFIHDIRRVLAKLPAKRQ----- 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ L +PL + R E++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLRNPLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GQGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|62179387|ref|YP_215804.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|375113712|ref|ZP_09758882.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SCSA50]
gi|62127020|gb|AAX64723.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|322713858|gb|EFZ05429.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SCSA50]
Length = 453
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 124/429 (28%), Positives = 197/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LNPDILRAIAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 -----SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
+ R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITHQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR + K +
Sbjct: 160 RML--------------------------------DMGFIHDIRRVLAKLPAKRQ----- 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ L +PL + R E++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLRNPLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GQGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|402221225|gb|EJU01294.1| DEAD-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 813
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 125/445 (28%), Positives = 198/445 (44%), Gaps = 80/445 (17%)
Query: 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSP 77
P LF PL LP + AL+ ++ +Q Q T L RD+ +
Sbjct: 52 PSTAELFAGLPL-SLPT-----QRALRAASYTTPTTIQARTLQHT----LRGRDVLGAAR 101
Query: 78 TGSGKTLSYALPIVQTLSNRA---VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGL 134
TGSGKTL++ LP+++ L L AL++ PTR+LA+Q+ +V ++ S GL
Sbjct: 102 TGSGKTLAFLLPVLELLWRSKWGPQDGLGALIISPTRELAMQIFEVLRSVGQYHSFSAGL 161
Query: 135 AVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194
+G ++ DE QE + ++ILVATPGRL+ H++ T GF
Sbjct: 162 VIGGKNVRDE----------------------QERLTRMNILVATPGRLLQHMDQTAGFA 199
Query: 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCG 254
++L LV+DE DR+L + + ++ +L R+
Sbjct: 200 TDNLQILVLDEADRILDMGFSHTINAII----------------------ANLPKTRQT- 236
Query: 255 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKL--PERLESYKL 312
++ SAT TQ LA+L L P F++ E +L P+ LE + L
Sbjct: 237 ---------------LLFSATQTQSVKDLARLSLKDPEFVSVREAGQELATPKNLEQHYL 281
Query: 313 ICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELR--IKIKEYSGLQR 370
+CE K L + +++ + K +VF S S ++ + F +L+ I + G Q+
Sbjct: 282 VCELDKKLDVLYSFIKAHLKSKALVFLS---SGKQVRFVFEAFRKLQPGIPLLHLLGKQK 338
Query: 371 QSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG 430
+ R + F VL ++D RG+D V+ VV D P TYIHR GRTAR
Sbjct: 339 LAKRMDIFQRFTSSTNAVLFATDIAARGLDFPAVDWVVQLDAPEDADTYIHRVGRTARYD 398
Query: 431 QLGRCFTLLHKDEVKRFKKLLQKAD 455
G+ L +E + K L++ +
Sbjct: 399 SAGKALLFLLPNEEEGMLKELERKE 423
>gi|339243587|ref|XP_003377719.1| ATP-dependent RNA helicase DBP8 [Trichinella spiralis]
gi|316973448|gb|EFV57036.1| ATP-dependent RNA helicase DBP8 [Trichinella spiralis]
Length = 563
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 109/416 (26%), Positives = 189/416 (45%), Gaps = 74/416 (17%)
Query: 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 105
MGI PVQ+ E L +D S TG+GKTL++A+PI+Q LS + AL
Sbjct: 123 MGIVEPSPVQLNCIPEI----LIGKDAIGCSKTGTGKTLAFAIPIIQRLSEDPY-GIYAL 177
Query: 106 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 165
V+ P+R+LA Q+ + F + +GL + VG + ++ +E+ +P
Sbjct: 178 VLTPSRELAFQIGEQFQVLGKPLGLRTSIVVGGRDMIEQANEIANQPH------------ 225
Query: 166 LQELQSAVDILVATPGRLMDHINATRGFTLEH-LCYLVVDETDRLLREAYQAWLPTVLQL 224
IL+ATPGRL DHI + H + + V+DE DRLL Y L T+++
Sbjct: 226 ---------ILIATPGRLADHILSRSDENWFHKIKFFVLDEADRLLDGQYDLQLETIIEK 276
Query: 225 TRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 284
+ + ++ SAT+T +L
Sbjct: 277 LPKERQT--------------------------------------LLFSATITDALCRLQ 298
Query: 285 QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEK----CIVFTS 340
+L + P F + + LE ++C +K Y+ +++ ++ ++F+
Sbjct: 299 ELSVKKPFFWQEQSCTVTV-DTLEQRYVLCPKSVKDAYVTYVVKLFTDKNPQSSVLIFSH 357
Query: 341 SVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMD 400
S L + F +L K+ + Q R + F+ ++++L+ +D +RG+D
Sbjct: 358 SCYECQALTLM---FADLGFKVGALHSMISQRERLSSFNLFKSNQLKILICTDVASRGLD 414
Query: 401 VEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 456
+ V+ V+N++ PA KTYIHR GR+ARAG+ GR T + + ++ + ++KA N
Sbjct: 415 LPFVDLVINHNIPAVAKTYIHRVGRSARAGRSGRAVTFITQYDIALLQA-IEKAIN 469
>gi|205352078|ref|YP_002225879.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|375122870|ref|ZP_09768034.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Gallinarum str. SG9]
gi|445130786|ref|ZP_21381494.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9184]
gi|205271859|emb|CAR36694.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
subsp. enterica serovar Gallinarum str. 287/91]
gi|326627120|gb|EGE33463.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Gallinarum str. SG9]
gi|444851544|gb|ELX76633.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9184]
Length = 453
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 124/429 (28%), Positives = 197/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LNPDILRAIAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 -----SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
+ R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITHQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR + K +
Sbjct: 160 RML--------------------------------DMGFIHDIRRVLAKLPAKRQ----- 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ L +PL + R E++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLRNPLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GQGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHNLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|194442237|ref|YP_002040055.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|418790452|ref|ZP_13346227.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19447]
gi|418791862|ref|ZP_13347613.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19449]
gi|418798926|ref|ZP_13354599.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19567]
gi|418808339|ref|ZP_13363894.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21550]
gi|418812496|ref|ZP_13368019.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22513]
gi|418815866|ref|ZP_13371361.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21538]
gi|418820078|ref|ZP_13375513.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22425]
gi|418833247|ref|ZP_13388177.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM N18486]
gi|418835168|ref|ZP_13390064.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM N1543]
gi|418842083|ref|ZP_13396896.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21554]
gi|418843195|ref|ZP_13397994.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19443]
gi|418850126|ref|ZP_13404845.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 37978]
gi|418853485|ref|ZP_13408174.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19593]
gi|418859588|ref|ZP_13414190.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19470]
gi|418861916|ref|ZP_13416466.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19536]
gi|418869078|ref|ZP_13423519.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 4176]
gi|194400900|gb|ACF61122.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Newport str. SL254]
gi|392758015|gb|EJA14892.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19447]
gi|392765568|gb|EJA22354.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19567]
gi|392769395|gb|EJA26128.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19449]
gi|392775916|gb|EJA32606.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22513]
gi|392776527|gb|EJA33214.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21550]
gi|392791233|gb|EJA47723.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21538]
gi|392793094|gb|EJA49539.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22425]
gi|392795819|gb|EJA52170.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM N18486]
gi|392803986|gb|EJA60163.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM N1543]
gi|392807408|gb|EJA63479.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21554]
gi|392817333|gb|EJA73248.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19443]
gi|392819332|gb|EJA75204.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 37978]
gi|392826746|gb|EJA82467.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19593]
gi|392829782|gb|EJA85443.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19470]
gi|392837155|gb|EJA92726.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19536]
gi|392837768|gb|EJA93338.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 4176]
Length = 453
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 124/429 (28%), Positives = 197/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LNPDILRAIAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 -----SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
+ R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITHQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR + K +
Sbjct: 160 RML--------------------------------DMGFIHDIRRVLAKLPAKRQ----- 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ L +PL + R E++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLRNPLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GQGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|56414080|ref|YP_151155.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|167550495|ref|ZP_02344252.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA29]
gi|168240684|ref|ZP_02665616.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL486]
gi|168263681|ref|ZP_02685654.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Hadar str. RI_05P066]
gi|168466416|ref|ZP_02700278.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Newport str. SL317]
gi|194451116|ref|YP_002044848.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|197363003|ref|YP_002142640.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|198243732|ref|YP_002214783.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|207856257|ref|YP_002242908.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|375000580|ref|ZP_09724920.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Infantis str. SARB27]
gi|375118271|ref|ZP_09763438.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Dublin str. SD3246]
gi|386590728|ref|YP_006087128.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. B182]
gi|416421869|ref|ZP_11689773.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|416431386|ref|ZP_11695540.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|416441634|ref|ZP_11701846.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|416445410|ref|ZP_11704299.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|416454128|ref|ZP_11710131.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|416459340|ref|ZP_11713849.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|416467278|ref|ZP_11717295.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|416481043|ref|ZP_11723099.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|416500446|ref|ZP_11731517.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|416505189|ref|ZP_11733623.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB31]
gi|416523109|ref|ZP_11740856.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. ATCC BAA710]
gi|416530487|ref|ZP_11745013.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. LQC 10]
gi|416537766|ref|ZP_11749062.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB30]
gi|416546393|ref|ZP_11753879.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|416553658|ref|ZP_11757826.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 29N]
gi|416560250|ref|ZP_11761079.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 42N]
gi|416570320|ref|ZP_11765981.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 4441 H]
gi|416578494|ref|ZP_11770614.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|416582432|ref|ZP_11772706.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|416593743|ref|ZP_11780149.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|416599470|ref|ZP_11783704.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|416604972|ref|ZP_11786593.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|416612620|ref|ZP_11791645.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|416620697|ref|ZP_11795886.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|416629582|ref|ZP_11800206.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|416643586|ref|ZP_11806084.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|416650093|ref|ZP_11810201.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|416654173|ref|ZP_11812137.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|416669875|ref|ZP_11819718.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|416679932|ref|ZP_11823189.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|416690487|ref|ZP_11825906.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|416707553|ref|ZP_11832651.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|416714851|ref|ZP_11838169.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|416716629|ref|ZP_11838976.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|416724879|ref|ZP_11845263.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|416730351|ref|ZP_11848602.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|416740514|ref|ZP_11854470.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|416756557|ref|ZP_11862643.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|416760825|ref|ZP_11865033.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|417371944|ref|ZP_12142365.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Inverness str. R8-3668]
gi|417454938|ref|ZP_12163427.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. S5-403]
gi|418483709|ref|ZP_13052715.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 80959-06]
gi|418491688|ref|ZP_13058196.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035278]
gi|418494018|ref|ZP_13060478.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035318]
gi|418500025|ref|ZP_13066424.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035320]
gi|418501847|ref|ZP_13068223.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035321]
gi|418509664|ref|ZP_13075956.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035327]
gi|418510917|ref|ZP_13077187.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Pomona str. ATCC 10729]
gi|418526685|ref|ZP_13092654.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008286]
gi|418763606|ref|ZP_13319721.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35185]
gi|418765207|ref|ZP_13321297.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35199]
gi|418769492|ref|ZP_13325522.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21539]
gi|418773422|ref|ZP_13329406.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 33953]
gi|418780105|ref|ZP_13335996.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35188]
gi|418783033|ref|ZP_13338884.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21559]
gi|418803660|ref|ZP_13359278.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35202]
gi|419727968|ref|ZP_14254936.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41579]
gi|419736759|ref|ZP_14263585.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41563]
gi|419738617|ref|ZP_14265377.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41573]
gi|419742538|ref|ZP_14269211.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41566]
gi|419747650|ref|ZP_14274154.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41565]
gi|419790882|ref|ZP_14316548.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. Levine 1]
gi|419794538|ref|ZP_14320150.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. Levine 15]
gi|421357993|ref|ZP_15808300.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 622731-39]
gi|421364779|ref|ZP_15815010.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639016-6]
gi|421367454|ref|ZP_15817647.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 640631]
gi|421370361|ref|ZP_15820527.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-0424]
gi|421377806|ref|ZP_15827896.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-6]
gi|421382364|ref|ZP_15832411.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 485549-17]
gi|421386100|ref|ZP_15836115.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-22]
gi|421392135|ref|ZP_15842096.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-70]
gi|421393025|ref|ZP_15842972.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-26]
gi|421398933|ref|ZP_15848837.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-37]
gi|421404842|ref|ZP_15854678.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-46]
gi|421407977|ref|ZP_15857783.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-50]
gi|421411212|ref|ZP_15860980.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-1427]
gi|421419078|ref|ZP_15868774.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-2659]
gi|421421358|ref|ZP_15871026.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 78-1757]
gi|421424345|ref|ZP_15873988.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22510-1]
gi|421432250|ref|ZP_15881826.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 8b-1]
gi|421434591|ref|ZP_15884140.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648905 5-18]
gi|421438819|ref|ZP_15888313.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 6-18]
gi|421446374|ref|ZP_15895786.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-3079]
gi|421450861|ref|ZP_15900231.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 58-6482]
gi|421569210|ref|ZP_16014914.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00322]
gi|421573437|ref|ZP_16019073.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00325]
gi|421580106|ref|ZP_16025667.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00326]
gi|421584754|ref|ZP_16030261.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00328]
gi|436591026|ref|ZP_20512039.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22704]
gi|436667097|ref|ZP_20517358.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE30663]
gi|436801822|ref|ZP_20525138.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS44]
gi|436811759|ref|ZP_20530639.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1882]
gi|436816131|ref|ZP_20533682.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1884]
gi|436839279|ref|ZP_20537599.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1594]
gi|436851726|ref|ZP_20542325.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1566]
gi|436858488|ref|ZP_20547008.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1580]
gi|436865664|ref|ZP_20551631.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1543]
gi|436875162|ref|ZP_20557069.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1441]
gi|436879149|ref|ZP_20559540.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1810]
gi|436884969|ref|ZP_20562367.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1558]
gi|436896784|ref|ZP_20569540.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1018]
gi|436904121|ref|ZP_20574222.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1010]
gi|436911286|ref|ZP_20577115.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1729]
gi|436918637|ref|ZP_20581783.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0895]
gi|436930853|ref|ZP_20589078.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0899]
gi|436933091|ref|ZP_20589530.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1457]
gi|436942428|ref|ZP_20595374.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1747]
gi|436947983|ref|ZP_20598389.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0968]
gi|436963604|ref|ZP_20605881.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1444]
gi|436969786|ref|ZP_20608701.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1445]
gi|436977489|ref|ZP_20612267.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1559]
gi|436995584|ref|ZP_20619309.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1565]
gi|437005335|ref|ZP_20622427.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1808]
gi|437022924|ref|ZP_20628789.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1811]
gi|437032228|ref|ZP_20631872.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0956]
gi|437041852|ref|ZP_20635757.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1455]
gi|437050076|ref|ZP_20640357.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1575]
gi|437055377|ref|ZP_20643520.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1725]
gi|437068567|ref|ZP_20650698.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1745]
gi|437077641|ref|ZP_20655540.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1791]
gi|437086984|ref|ZP_20660993.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1795]
gi|437088622|ref|ZP_20661659.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 576709]
gi|437108580|ref|ZP_20667547.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 635290-58]
gi|437124198|ref|ZP_20673269.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-16]
gi|437134169|ref|ZP_20678593.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-19]
gi|437138041|ref|ZP_20680771.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-2]
gi|437147658|ref|ZP_20686940.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-9]
gi|437156209|ref|ZP_20692134.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629163]
gi|437161668|ref|ZP_20695604.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE15-1]
gi|437166399|ref|ZP_20698052.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_N202]
gi|437179723|ref|ZP_20705574.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_56-3991]
gi|437184726|ref|ZP_20708577.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_76-3618]
gi|437207742|ref|ZP_20712669.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13183-1]
gi|437260816|ref|ZP_20717886.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_81-2490]
gi|437267035|ref|ZP_20721001.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL909]
gi|437276394|ref|ZP_20726403.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL913]
gi|437300726|ref|ZP_20733150.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_69-4941]
gi|437311289|ref|ZP_20735884.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 638970-15]
gi|437320056|ref|ZP_20738223.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 17927]
gi|437336531|ref|ZP_20743138.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS4]
gi|437420194|ref|ZP_20754571.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 22-17]
gi|437447978|ref|ZP_20759146.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 40-18]
gi|437467994|ref|ZP_20764636.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 1-1]
gi|437473851|ref|ZP_20765958.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 4-1]
gi|437489679|ref|ZP_20770464.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642046 4-7]
gi|437512856|ref|ZP_20777411.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648898 4-5]
gi|437528012|ref|ZP_20780039.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648899 3-17]
gi|437556151|ref|ZP_20784988.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648900 1-16]
gi|437579691|ref|ZP_20791741.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 1-17]
gi|437596113|ref|ZP_20796163.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 39-2]
gi|437607079|ref|ZP_20800097.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648902 6-8]
gi|437621948|ref|ZP_20804458.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648903 1-6]
gi|437640751|ref|ZP_20807826.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648904 3-6]
gi|437659148|ref|ZP_20812075.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 653049 13-19]
gi|437690308|ref|ZP_20820226.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 9-7]
gi|437712843|ref|ZP_20827219.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 42-20]
gi|437735588|ref|ZP_20832484.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 16-16]
gi|437782952|ref|ZP_20836607.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 76-2651]
gi|437804095|ref|ZP_20838764.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 33944]
gi|438089517|ref|ZP_20860192.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 81-2625]
gi|438104757|ref|ZP_20866021.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 62-1976]
gi|438114074|ref|ZP_20869850.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 53-407]
gi|445139834|ref|ZP_21384592.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Dublin str. SL1438]
gi|445152653|ref|ZP_21390929.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Dublin str. HWS51]
gi|445177694|ref|ZP_21397816.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE8a]
gi|445197126|ref|ZP_21400661.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 20037]
gi|445227809|ref|ZP_21404421.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE10]
gi|445340930|ref|ZP_21416592.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 18569]
gi|445348207|ref|ZP_21419576.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13-1]
gi|445367477|ref|ZP_21425604.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. PT23]
gi|56128337|gb|AAV77843.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
subsp. enterica serovar Paratyphi A str. ATCC 9150]
gi|194409420|gb|ACF69639.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL476]
gi|195631083|gb|EDX49669.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Newport str. SL317]
gi|197094480|emb|CAR59997.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
subsp. enterica serovar Paratyphi A str. AKU_12601]
gi|197938248|gb|ACH75581.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Dublin str. CT_02021853]
gi|205324518|gb|EDZ12357.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA29]
gi|205339744|gb|EDZ26508.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL486]
gi|205347690|gb|EDZ34321.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Hadar str. RI_05P066]
gi|206708060|emb|CAR32351.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
subsp. enterica serovar Enteritidis str. P125109]
gi|322616296|gb|EFY13205.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322619546|gb|EFY16421.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322622758|gb|EFY19603.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322628670|gb|EFY25457.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322631607|gb|EFY28363.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322637134|gb|EFY33837.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322641666|gb|EFY38302.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322644539|gb|EFY41079.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322654208|gb|EFY50531.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322658123|gb|EFY54390.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|322663597|gb|EFY59799.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|322670333|gb|EFY66473.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322671569|gb|EFY67691.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322676925|gb|EFY72992.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322682850|gb|EFY78869.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322686529|gb|EFY82511.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|323194574|gb|EFZ79767.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|323199095|gb|EFZ84191.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323202050|gb|EFZ87109.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|323213909|gb|EFZ98679.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|323215239|gb|EFZ99984.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323220842|gb|EGA05280.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|323227299|gb|EGA11467.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|323229917|gb|EGA14040.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323233142|gb|EGA17238.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323240877|gb|EGA24919.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323243194|gb|EGA27214.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323248733|gb|EGA32661.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323251737|gb|EGA35604.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323261448|gb|EGA45029.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|323267879|gb|EGA51358.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|326622538|gb|EGE28883.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Dublin str. SD3246]
gi|353075268|gb|EHB41028.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Infantis str. SARB27]
gi|353606659|gb|EHC60830.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Inverness str. R8-3668]
gi|353635043|gb|EHC81466.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. S5-403]
gi|363550756|gb|EHL35082.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. ATCC BAA710]
gi|363550939|gb|EHL35264.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. LQC 10]
gi|363556123|gb|EHL40338.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB31]
gi|363562577|gb|EHL46673.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 29N]
gi|363562885|gb|EHL46973.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB30]
gi|363574925|gb|EHL58784.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 42N]
gi|363575604|gb|EHL59454.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 4441 H]
gi|366060253|gb|EHN24517.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035278]
gi|366060684|gb|EHN24944.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 80959-06]
gi|366063265|gb|EHN27485.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035318]
gi|366069492|gb|EHN33615.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035320]
gi|366076294|gb|EHN40332.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035321]
gi|366077759|gb|EHN41768.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035327]
gi|366085166|gb|EHN49056.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Pomona str. ATCC 10729]
gi|366828276|gb|EHN55163.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|372205293|gb|EHP18808.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008286]
gi|381290433|gb|EIC31698.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41563]
gi|381301550|gb|EIC42606.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41579]
gi|381302017|gb|EIC43066.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41573]
gi|381313833|gb|EIC54612.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41566]
gi|381316617|gb|EIC57363.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41565]
gi|383797772|gb|AFH44854.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. B182]
gi|392612625|gb|EIW95094.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. Levine 1]
gi|392614840|gb|EIW97284.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. Levine 15]
gi|392733074|gb|EIZ90280.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35185]
gi|392739788|gb|EIZ96920.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21539]
gi|392741360|gb|EIZ98465.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35199]
gi|392750338|gb|EJA07307.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35188]
gi|392753796|gb|EJA10717.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 33953]
gi|392758103|gb|EJA14979.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21559]
gi|392772755|gb|EJA29455.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35202]
gi|395983007|gb|EJH92201.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639016-6]
gi|395985974|gb|EJH95138.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 640631]
gi|395989088|gb|EJH98223.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 622731-39]
gi|395998083|gb|EJI07121.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-6]
gi|395998271|gb|EJI07303.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 485549-17]
gi|396006913|gb|EJI15874.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-0424]
gi|396009815|gb|EJI18738.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-70]
gi|396014719|gb|EJI23604.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-22]
gi|396019276|gb|EJI28133.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-26]
gi|396024689|gb|EJI33474.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-46]
gi|396029107|gb|EJI37846.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-50]
gi|396029377|gb|EJI38114.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-37]
gi|396036586|gb|EJI45245.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-2659]
gi|396040673|gb|EJI49296.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 78-1757]
gi|396046746|gb|EJI55329.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-1427]
gi|396050641|gb|EJI59163.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 8b-1]
gi|396060342|gb|EJI68788.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648905 5-18]
gi|396060399|gb|EJI68844.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22510-1]
gi|396061956|gb|EJI70369.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-3079]
gi|396065357|gb|EJI73734.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 58-6482]
gi|396072047|gb|EJI80362.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 6-18]
gi|402520585|gb|EJW27927.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00326]
gi|402527564|gb|EJW34825.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00322]
gi|402527696|gb|EJW34956.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00325]
gi|402530726|gb|EJW37940.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00328]
gi|434957778|gb|ELL51385.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS44]
gi|434964390|gb|ELL57412.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1882]
gi|434974247|gb|ELL66635.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1884]
gi|434979916|gb|ELL71867.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22704]
gi|434980587|gb|ELL72508.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1594]
gi|434987028|gb|ELL78679.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1566]
gi|434990640|gb|ELL82190.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1580]
gi|434994753|gb|ELL86070.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1441]
gi|434996699|gb|ELL88015.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1543]
gi|435007132|gb|ELL97989.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1810]
gi|435013151|gb|ELM03811.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1558]
gi|435014459|gb|ELM05025.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE30663]
gi|435016673|gb|ELM07199.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1018]
gi|435017493|gb|ELM07995.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1010]
gi|435025531|gb|ELM15662.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1729]
gi|435030635|gb|ELM20644.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0895]
gi|435032508|gb|ELM22452.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0899]
gi|435042627|gb|ELM32344.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1747]
gi|435044146|gb|ELM33844.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1457]
gi|435048853|gb|ELM38409.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1444]
gi|435056721|gb|ELM46092.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0968]
gi|435058556|gb|ELM47877.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1445]
gi|435063026|gb|ELM52198.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1565]
gi|435070702|gb|ELM59684.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1559]
gi|435071675|gb|ELM60615.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1808]
gi|435076182|gb|ELM64978.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1811]
gi|435080164|gb|ELM68857.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0956]
gi|435085116|gb|ELM73670.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1455]
gi|435095058|gb|ELM83395.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1745]
gi|435095217|gb|ELM83535.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1575]
gi|435098719|gb|ELM86950.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1725]
gi|435103130|gb|ELM91233.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1795]
gi|435103345|gb|ELM91440.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1791]
gi|435116657|gb|ELN04392.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 576709]
gi|435119369|gb|ELN06985.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 635290-58]
gi|435119648|gb|ELN07250.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-19]
gi|435120552|gb|ELN08130.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-16]
gi|435133761|gb|ELN20917.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-9]
gi|435133978|gb|ELN21122.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-2]
gi|435136988|gb|ELN24060.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629163]
gi|435144725|gb|ELN31557.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE15-1]
gi|435150330|gb|ELN37008.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_56-3991]
gi|435153057|gb|ELN39678.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_N202]
gi|435160643|gb|ELN46906.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_76-3618]
gi|435163272|gb|ELN49408.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_81-2490]
gi|435173752|gb|ELN59221.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL913]
gi|435176187|gb|ELN61577.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL909]
gi|435178589|gb|ELN63796.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_69-4941]
gi|435184051|gb|ELN68997.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 638970-15]
gi|435197394|gb|ELN81679.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 17927]
gi|435197600|gb|ELN81883.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS4]
gi|435201396|gb|ELN85308.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 22-17]
gi|435204891|gb|ELN88542.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13183-1]
gi|435209245|gb|ELN92573.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 40-18]
gi|435215443|gb|ELN98130.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 1-1]
gi|435224774|gb|ELO06723.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 4-1]
gi|435230548|gb|ELO11854.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648898 4-5]
gi|435231681|gb|ELO12910.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642046 4-7]
gi|435241271|gb|ELO21636.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 1-17]
gi|435241692|gb|ELO22034.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648900 1-16]
gi|435246979|gb|ELO26966.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648899 3-17]
gi|435250443|gb|ELO30173.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 39-2]
gi|435254285|gb|ELO33688.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648902 6-8]
gi|435256168|gb|ELO35513.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648903 1-6]
gi|435270200|gb|ELO48704.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 653049 13-19]
gi|435276700|gb|ELO54698.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648904 3-6]
gi|435281679|gb|ELO59339.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 9-7]
gi|435285984|gb|ELO63326.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 16-16]
gi|435287126|gb|ELO64341.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 42-20]
gi|435299320|gb|ELO75472.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 76-2651]
gi|435303024|gb|ELO78945.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 33944]
gi|435316942|gb|ELO90018.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 81-2625]
gi|435322053|gb|ELO94394.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 62-1976]
gi|435329098|gb|ELP00551.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 53-407]
gi|444853132|gb|ELX78204.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Dublin str. SL1438]
gi|444853682|gb|ELX78750.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Dublin str. HWS51]
gi|444855949|gb|ELX80988.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE8a]
gi|444864050|gb|ELX88860.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 20037]
gi|444866719|gb|ELX91439.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE10]
gi|444871920|gb|ELX96307.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 18569]
gi|444876342|gb|ELY00518.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13-1]
gi|444882424|gb|ELY06390.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. PT23]
Length = 453
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 124/429 (28%), Positives = 197/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LNPDILRAIAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 -----SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
+ R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITHQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR + K +
Sbjct: 160 RML--------------------------------DMGFIHDIRRVLAKLPAKRQ----- 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ L +PL + R E++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLRNPLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GQGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|16759741|ref|NP_455358.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|29142486|ref|NP_805828.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|213163843|ref|ZP_03349553.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhi str. E00-7866]
gi|213424785|ref|ZP_03357535.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
gi|213854569|ref|ZP_03382809.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
gi|378960234|ref|YP_005217720.1| ATP-dependent RNA helicase rhlE [Salmonella enterica subsp.
enterica serovar Typhi str. P-stx-12]
gi|25385229|pir||AI0599 probable ATP-dependent RNA helicase rhlE STY0855 [imported] -
Salmonella enterica subsp. enterica serovar Typhi
(strain CT18)
gi|16502034|emb|CAD05267.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
subsp. enterica serovar Typhi]
gi|29138117|gb|AAO69688.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
subsp. enterica serovar Typhi str. Ty2]
gi|374354106|gb|AEZ45867.1| ATP-dependent RNA helicase rhlE [Salmonella enterica subsp.
enterica serovar Typhi str. P-stx-12]
Length = 455
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 124/429 (28%), Positives = 197/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LNPDILRAIAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 -----SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
+ R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITHQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR + K +
Sbjct: 160 RML--------------------------------DMGFIHDIRRVLAKLPAKRQ----- 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ L +PL + R E++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLRNPLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GQGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|417356647|ref|ZP_12132146.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Give str. S5-487]
gi|353595575|gb|EHC52803.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Give str. S5-487]
Length = 463
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 124/429 (28%), Positives = 197/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LNPDILRAIAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 -----SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
+ R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITHQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR + K +
Sbjct: 160 RML--------------------------------DMGFIHDIRRVLAKLPAKRQ----- 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ L +PL + R E++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLRNPLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GQGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|422748197|ref|ZP_16802110.1| DEAD/DEAH box helicase [Escherichia coli H252]
gi|433011473|ref|ZP_20199877.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE229]
gi|433162588|ref|ZP_20347347.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE179]
gi|323953540|gb|EGB49406.1| DEAD/DEAH box helicase [Escherichia coli H252]
gi|431518088|gb|ELH95608.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE229]
gi|431691258|gb|ELJ56718.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE179]
Length = 453
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 125/429 (29%), Positives = 195/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +R L++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRTLILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 160 RML--------------------------------DMGFIHDIRRV-----LTKLPAKRQ 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|161614932|ref|YP_001588897.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|168230715|ref|ZP_02655773.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Kentucky str. CDC 191]
gi|168820033|ref|ZP_02832033.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Weltevreden str. HI_N05-537]
gi|194471685|ref|ZP_03077669.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Kentucky str. CVM29188]
gi|200390413|ref|ZP_03217024.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Virchow str. SL491]
gi|409249265|ref|YP_006885097.1| probable ATP-dependent RNA helicase DDX17 DEAD box protein 17;
RNA-dependent helicase p72; DEAD box protein p72
[Salmonella enterica subsp. enterica serovar Weltevreden
str. 2007-60-3289-1]
gi|161364296|gb|ABX68064.1| hypothetical protein SPAB_02686 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194458049|gb|EDX46888.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Kentucky str. CVM29188]
gi|199602858|gb|EDZ01404.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Virchow str. SL491]
gi|205334823|gb|EDZ21587.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Kentucky str. CDC 191]
gi|205343118|gb|EDZ29882.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Weltevreden str. HI_N05-537]
gi|320085093|emb|CBY94880.1| probable ATP-dependent RNA helicase DDX17 DEAD box protein 17;
RNA-dependent helicase p72; DEAD box protein p72
[Salmonella enterica subsp. enterica serovar Weltevreden
str. 2007-60-3289-1]
Length = 454
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 124/429 (28%), Positives = 197/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LNPDILRAIAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 -----SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
+ R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITHQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR + K +
Sbjct: 160 RML--------------------------------DMGFIHDIRRVLAKLPAKRQ----- 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ L +PL + R E++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLRNPLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GQGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|197247942|ref|YP_002145775.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|440761276|ref|ZP_20940363.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Agona str. SH11G1113]
gi|440766050|ref|ZP_20945053.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Agona str. SH08SF124]
gi|440771501|ref|ZP_20950417.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Agona str. SH10GFN094]
gi|197211645|gb|ACH49042.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Agona str. SL483]
gi|436421208|gb|ELP19056.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Agona str. SH10GFN094]
gi|436423881|gb|ELP21678.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Agona str. SH08SF124]
gi|436424985|gb|ELP22737.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Agona str. SH11G1113]
Length = 453
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 124/429 (28%), Positives = 197/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LNPDILRAIAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 -----SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
+ R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITHQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR + K +
Sbjct: 160 RML--------------------------------DMGFIHDIRRVLAKLPAKRQ----- 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ L +PL + R E++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLRNPLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GQGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|384498821|gb|EIE89312.1| hypothetical protein RO3G_14023 [Rhizopus delemar RA 99-880]
Length = 808
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 133/480 (27%), Positives = 220/480 (45%), Gaps = 50/480 (10%)
Query: 7 KSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPG 66
K P + + VDVS ++D L P ++ AL+ SS P+Q ++T+
Sbjct: 236 KKRPTIDDVDQSVDVSAWKDFELAQ-PIVN-----ALKYHKFSSPTPIQ----EKTLPLA 285
Query: 67 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126
L RD+ ++ TGSGKTL++ +PIVQ L+ L L++ PTR+LA+QVKD A +A
Sbjct: 286 LQGRDIVGSAETGSGKTLAFGIPIVQYLATHEKEDLSGLILTPTRELAIQVKDHIANVAL 345
Query: 127 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDH 186
+ VG G+ ++ L L+ DI+VATPGRL +
Sbjct: 346 FTDIRCVAIVG-------------------GMSAQKQERL--LKGKPDIIVATPGRLWEL 384
Query: 187 INATRGFT--LEHLCYLVVDETDRLLREAYQAWLPTVL-------QLTRSDNENRFSDAS 237
+ + + L+ + +LV+DE DR+L + + L +L Q T E
Sbjct: 385 FSGNQEYMDMLKRIKFLVLDEADRMLEKGHFEELTNILNTLSTKRQTTTDWPEEIGQGNR 444
Query: 238 TFLPSAFGSLKT-IRRCGVERGFKDKPYPRLVKMVLSATLTQDP--NKLAQLDLHHPLFL 294
LP G +T I + + + + K T T D +++ D L
Sbjct: 445 KILPQDLGVHQTFIYTATLSKDIRFNVKAKKRKATAQPTGTMDDLLSRIEFADQEPALID 504
Query: 295 TTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNH 354
T E + RL K+ C K +Y+ + + I+F +S+++ RL +
Sbjct: 505 MTSEN--IVASRLLEAKIDCLQNEKDVYVYYFVTRYPG-RTIIFVNSIDAIRRLVPV--- 558
Query: 355 FGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA 414
F L +++ +Q R K L F+ VLV+SD RG+D+ V +V++Y P
Sbjct: 559 FKLLNVEVLGLHAQMQQKQRLKNLDRFKANDKAVLVASDVAARGLDIPSVEHVIHYQLPR 618
Query: 415 YIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQK-ADNDSCPIHSIPSSLIESLR 473
+ Y+HR+GRTARA + G L +E K ++KL Q N+ P+ + +++ S++
Sbjct: 619 SGEIYVHRSGRTARANRDGISLLLCGPEETKIYQKLCQTLRKNEEYPLFPVDLNILRSMK 678
>gi|148380762|ref|YP_001255303.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum A str. ATCC 3502]
gi|153932415|ref|YP_001385046.1| DEAD/DEAH box helicase [Clostridium botulinum A str. ATCC 19397]
gi|153936759|ref|YP_001388516.1| DEAD/DEAH box helicase [Clostridium botulinum A str. Hall]
gi|148290246|emb|CAL84365.1| ATP-dependent RNA helicase (cold-shock dead-box protein)
[Clostridium botulinum A str. ATCC 3502]
gi|152928459|gb|ABS33959.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum A str. ATCC 19397]
gi|152932673|gb|ABS38172.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum A str. Hall]
Length = 524
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 117/434 (26%), Positives = 202/434 (46%), Gaps = 81/434 (18%)
Query: 24 FEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKT 83
E+ ++L + LK A+Q MG F A+ +++I L D+ + TG+GKT
Sbjct: 1 MENKNFENLNLNEDVLK-AIQYMG----FETPSAIQEKSIPVVLEGADVIAQAQTGTGKT 55
Query: 84 LSYALPIVQTLSNR-AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIA 142
L++ P++ L ++ + ++ALV+ PTR+LALQ+KD ++ V G SI
Sbjct: 56 LAFGAPVISALCDKEKKKGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVYGGESIE 115
Query: 143 DEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLV 202
+I ++++S VDI+V TPGR++DHIN R L + +L+
Sbjct: 116 RQI---------------------KDIKSGVDIVVGTPGRILDHIN-RRTLKLGGIDFLI 153
Query: 203 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDK 262
+DE D +L + + T+++ T + + A+ P I++ + KD
Sbjct: 154 LDEADEMLNMGFIEDIETIMESTSEEKQTMLFSATMPAP--------IKKLALNYMKKDV 205
Query: 263 PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKL------PERLESYKLICES 316
+ ++K L+ +K+AQ H+ F + + + E ES + C +
Sbjct: 206 EHIAILKKSLTV------DKIAQ---HY--FAVKNKDKLEAICRIIDSEEPESAIIFCRT 254
Query: 317 KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSK 376
K LV +QS G +VE H G Q+ R
Sbjct: 255 KRGVDELVEAMQSKG--------YNVEGMH--------------------GDMSQNQRIN 286
Query: 377 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCF 436
TLK F++ + LV++D RG+DVE +++V+NYD P ++Y+HR GRT RA + G +
Sbjct: 287 TLKKFKKATLNFLVATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAY 346
Query: 437 TLLHKDEVKRFKKL 450
+L+ EV +++
Sbjct: 347 SLVTPREVSSIRQI 360
>gi|283833909|ref|ZP_06353650.1| ATP-dependent RNA helicase RhlE [Citrobacter youngae ATCC 29220]
gi|291070581|gb|EFE08690.1| ATP-dependent RNA helicase RhlE [Citrobacter youngae ATCC 29220]
Length = 447
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 124/429 (28%), Positives = 197/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LNPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 -----SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
++ R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 VTHQPHGKSRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+L+ATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLIATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 160 RML--------------------------------DMGFIHDIRRV-----LAKLPAKRQ 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ L +PL + R E++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKSLAEKLLRNPLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GQGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|437843415|ref|ZP_20846970.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. SARB17]
gi|435295547|gb|ELO71998.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Enteritidis str. SARB17]
Length = 455
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 125/429 (29%), Positives = 196/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LNPDILRAIAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 -----SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
+ R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITHQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 160 RML--------------------------------DMGFIHDIRRV-----LAKLPAKRQ 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ L +PL + R E++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLRNPLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GQGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|16764183|ref|NP_459798.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|167992052|ref|ZP_02573150.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|374978841|ref|ZP_09720183.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|378444299|ref|YP_005231931.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
subsp. enterica serovar Typhimurium str. D23580]
gi|378449185|ref|YP_005236544.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|378698757|ref|YP_005180714.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
subsp. enterica serovar Typhimurium str. SL1344]
gi|378983416|ref|YP_005246571.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|378988204|ref|YP_005251368.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
gi|379700028|ref|YP_005241756.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. ST4/74]
gi|383495604|ref|YP_005396293.1| ATP-dependent RNA helicase rhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. 798]
gi|422024961|ref|ZP_16371428.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm1]
gi|422029986|ref|ZP_16376224.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm2]
gi|427547193|ref|ZP_18926740.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm8]
gi|427563240|ref|ZP_18931505.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm9]
gi|427598123|ref|ZP_18940041.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm3]
gi|427628938|ref|ZP_18946004.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm6]
gi|427652236|ref|ZP_18950770.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm10]
gi|427660201|ref|ZP_18955720.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm11]
gi|427665329|ref|ZP_18960478.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm12]
gi|16419327|gb|AAL19757.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|205329602|gb|EDZ16366.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|261246078|emb|CBG23880.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
subsp. enterica serovar Typhimurium str. D23580]
gi|267992563|gb|ACY87448.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|301157405|emb|CBW16894.1| hypothetical ATP-dependent RNA helicase rhlE [Salmonella enterica
subsp. enterica serovar Typhimurium str. SL1344]
gi|312911844|dbj|BAJ35818.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|321226393|gb|EFX51444.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|323129127|gb|ADX16557.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. ST4/74]
gi|332987751|gb|AEF06734.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
gi|380462425|gb|AFD57828.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
subsp. enterica serovar Typhimurium str. 798]
gi|414022550|gb|EKT06027.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm8]
gi|414022674|gb|EKT06146.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm1]
gi|414024129|gb|EKT07524.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm2]
gi|414026435|gb|EKT09705.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm3]
gi|414036371|gb|EKT19205.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm9]
gi|414050948|gb|EKT33096.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm10]
gi|414052210|gb|EKT34273.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm6]
gi|414056455|gb|EKT38280.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm11]
gi|414061189|gb|EKT42625.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm12]
Length = 454
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 125/429 (29%), Positives = 196/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LNPDILRAIAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 -----SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
+ R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITHQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 160 RML--------------------------------DMGFIHDIRRV-----LAKLPAKRQ 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ L +PL + R E++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLRNPLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GQGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|427604256|ref|ZP_18941103.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm4]
gi|414041027|gb|EKT23616.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm4]
Length = 453
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 125/429 (29%), Positives = 196/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LNPDILRAIAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 -----SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
+ R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITHQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 160 RML--------------------------------DMGFIHDIRRV-----LAKLPAKRQ 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ L +PL + R E++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLRNPLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GQGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|386702440|ref|YP_006166277.1| ATP-dependent RNA helicase RhlE [Escherichia coli KO11FL]
gi|383393967|gb|AFH18925.1| ATP-dependent RNA helicase RhlE [Escherichia coli KO11FL]
Length = 454
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 124/429 (28%), Positives = 197/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR + K +
Sbjct: 160 RML--------------------------------DMGFIHDIRRVLTKLPAKRQ----- 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ ++FT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLMFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|378955820|ref|YP_005213307.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
subsp. enterica serovar Gallinarum/pullorum str.
RKS5078]
gi|438146852|ref|ZP_20876018.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Pullorum str. ATCC 9120]
gi|357206431|gb|AET54477.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
subsp. enterica serovar Gallinarum/pullorum str.
RKS5078]
gi|434938585|gb|ELL45535.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Pullorum str. ATCC 9120]
Length = 453
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 124/429 (28%), Positives = 197/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LNPDILRAIAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 -----SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
+ R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITHQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR + K +
Sbjct: 160 RML--------------------------------DMGFIHDIRRVLAKLPAKRQ----- 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ L +PL + R E++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLRNPLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GQGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|224024842|ref|ZP_03643208.1| hypothetical protein BACCOPRO_01573 [Bacteroides coprophilus DSM
18228]
gi|224018077|gb|EEF76076.1| hypothetical protein BACCOPRO_01573 [Bacteroides coprophilus DSM
18228]
Length = 445
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 120/409 (29%), Positives = 192/409 (46%), Gaps = 79/409 (19%)
Query: 39 LKVALQNMGISSLFPVQVA---VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 95
++ L N+ I L P+Q A +QE DL + SPTGSGKTL+Y LP+V +L
Sbjct: 10 IQTILANLKIEQLNPMQQASLKAFQEGC-------DLILLSPTGSGKTLAYLLPLVSSLK 62
Query: 96 NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLE 155
V ++A+V++P+R+LALQ++ VF A+ G +V G RP +E
Sbjct: 63 E-GVDGVQAVVLVPSRELALQIEQVFKAM--GTGWNVMSCYG------------GRPAME 107
Query: 156 AGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 215
++ ++ +V ++ TPGR+ DH++ + F + LV+DE D+ L +Q
Sbjct: 108 E------HRTMKGIRPSV--IIGTPGRMNDHLD-KQNFDASTVRLLVIDEFDKCLEFGFQ 158
Query: 216 AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSAT 275
+ V+ G L +RR + +LSAT
Sbjct: 159 EEMAEVI----------------------GKLPALRR----------------RFLLSAT 180
Query: 276 LTQDPNKLAQLDLHHPL-FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEK 334
T++ + L+ L FL E ++ ERL YK+ +K K L LL SLG+
Sbjct: 181 DTEEIPRFTGLNQTVKLDFLNPEE---QVSERLHIYKVCSPAKDKLETLYKLLCSLGDAS 237
Query: 335 CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394
+VF + ES R ++ + ++ + + G Q R + L FR G +L+S+D
Sbjct: 238 TLVFCNHRESVDR---VMKYLHSQKVYCEAFHGGMEQDDRERALYKFRNGSCHILISTDL 294
Query: 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443
RG+D+ + N+V+Y P +IHR GRTAR G + +LH +E
Sbjct: 295 AARGLDIPEIRNIVHYHLPVGEDGFIHRNGRTARWEAEGSAYLILHSEE 343
>gi|168236748|ref|ZP_02661806.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. SL480]
gi|194735725|ref|YP_002113911.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|194711227|gb|ACF90448.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. CVM19633]
gi|197290147|gb|EDY29504.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. SL480]
Length = 453
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 125/429 (29%), Positives = 196/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LNPDILRAIAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 -----SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
+ R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITHQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 160 RML--------------------------------DMGFIHDIRRV-----LAKLPAKRQ 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ L +PL + R E++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLRNPLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GQGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|389579132|ref|ZP_10169159.1| DNA/RNA helicase, superfamily II [Desulfobacter postgatei 2ac9]
gi|389400767|gb|EIM62989.1| DNA/RNA helicase, superfamily II [Desulfobacter postgatei 2ac9]
Length = 422
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 118/415 (28%), Positives = 196/415 (47%), Gaps = 77/415 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
DP + + G + P+Q +E I P L RD+ + TG+GKT ++ LP++Q L
Sbjct: 8 FDPTIDAGIAACGYTLPTPIQ----KEAIPPILEGRDILGLAQTGTGKTAAFVLPLLQRL 63
Query: 95 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
N + +RAL+V PTR+LA Q+ + + GL SI+ +
Sbjct: 64 LNGPRKKVRALIVAPTRELAEQIHADISKLGQKTGL--------QSIS-----------I 104
Query: 155 EAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY 214
G+ P+ ++ ++S V+I+VA PGRL+D +N R F+L+ + LV+DE D + +
Sbjct: 105 YGGVGKPPQ--IKAIRSGVEIIVACPGRLLDLLN-DRSFSLQAVEMLVLDEADHMFDKG- 160
Query: 215 QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274
FLP IRR K P R +V SA
Sbjct: 161 ------------------------FLPD-------IRRI-----IKQLPTKRQ-SLVFSA 183
Query: 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEK 334
T+ ++ LA+ L +P+ + T+ L +++ E K +LL+++ +E+
Sbjct: 184 TMPEEIRHLAENILINPVTVQINHTQPVLAISHVLFQVAKEQK------TSLLKTIIKEE 237
Query: 335 ----CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 390
+VFT + L +L G K G Q R + L F+ G+ ++LV
Sbjct: 238 EMKSTLVFTRTKHKAKSLALVLQKAG---YKAASIQGNLSQLKRQEALNGFKTGEFKILV 294
Query: 391 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 445
++D RG+DV+G+++V+NYD P +TY HR GRT RA + G+ F ++++K
Sbjct: 295 ATDIAARGIDVKGISHVINYDVPDTPETYTHRTGRTGRAERAGQAFIFAGQEDIK 349
>gi|417412622|ref|ZP_12158261.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Mississippi str. A4-633]
gi|353626248|gb|EHC74832.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Mississippi str. A4-633]
Length = 406
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 125/429 (29%), Positives = 196/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LNPDILRAIAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 -----SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
+ R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITHQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 160 RML--------------------------------DMGFIHDIRRV-----LAKLPAKRQ 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ L +PL + R E++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLRNPLEIEVAH-RNTASEQVTQHVHFVDKKRKRELLSQMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GQGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|408399225|gb|EKJ78348.1| hypothetical protein FPSE_01453 [Fusarium pseudograminearum CS3096]
Length = 906
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 112/354 (31%), Positives = 168/354 (47%), Gaps = 88/354 (24%)
Query: 13 PWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQ---ETIGPGLFE 69
PW+ P+ VS P L L P+ L+ G F VQ A T PG
Sbjct: 334 PWLAKPLRVSQDTRTPFSELDIL-PKACRVLEEKGFRDAFAVQTAAIPLLLPTSRPG--- 389
Query: 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129
D+C+++ TGSGKTL+YALP+ + +S + LRALVVLPTR+L Q ++ F A A
Sbjct: 390 -DVCVSAATGSGKTLAYALPVTRDISQGCLTRLRALVVLPTRELVKQAQETFELCARAFD 448
Query: 130 LS------VGLAVGQSSIADEISELIKRPKLEAGICYDPE-------------------- 163
S VG++VG S DE ++ +E + YDPE
Sbjct: 449 GSDRKRVRVGVSVGSQSFEDE-----QKAFMEQELRYDPEAYKKLQDEVQQQNQLKLGLS 503
Query: 164 --DVLQELQ-----------------SAVDILVATPGRLMDHINATRGFTLEHLCYLVVD 204
D L +L+ S +D+L+ TPGRL++H+ T GF L+++ +LVVD
Sbjct: 504 ATDSLDDLEDTDPRLSSKNGYVVDFLSKIDVLICTPGRLVEHMEQTPGFNLDYVRWLVVD 563
Query: 205 ETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPY 264
E D+LL +++Q WL V++ R P+A R F D +
Sbjct: 564 EADKLLAQSFQGWLDVVMEKFRVSK-----------PTA-------------RDFPDINF 599
Query: 265 PRLVKMVLSATLTQDPNKLAQLDLHHPLFL---TTGETR---YKLPERLESYKL 312
+ K++LSATLT+D + L QL LH P + + G+ + + LP +L+ + +
Sbjct: 600 SGVRKIILSATLTRDLSLLNQLGLHRPQMIVLESDGDVQIAEHSLPAQLKEHSI 653
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 56/80 (70%), Gaps = 2/80 (2%)
Query: 373 VRSKTLKAFR--EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG 430
+R KTL+AF I++LV+SD ++RG+D+ +++V+NYD PA + Y+HR GRTARAG
Sbjct: 785 IRRKTLRAFSTPSSPIRLLVASDLVSRGIDLPNLDHVINYDMPASVAGYVHRVGRTARAG 844
Query: 431 QLGRCFTLLHKDEVKRFKKL 450
+ G +TL+ DE + K+
Sbjct: 845 KSGSAWTLVGDDESWFYNKI 864
>gi|291614701|ref|YP_003524858.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus
ES-1]
gi|291584813|gb|ADE12471.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus
ES-1]
Length = 450
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 121/429 (28%), Positives = 193/429 (44%), Gaps = 78/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + AL G + P+Q + I L DL + TG+GKT ++ALP++Q L
Sbjct: 11 LAPPILKALTEAGYVTPTPIQA----QAIPLALEGHDLMAGAQTGTGKTAAFALPMLQKL 66
Query: 95 -------SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISE 147
++ A +RAL+++PTR+LA+QV++ A A L + G I +
Sbjct: 67 LPHASASTSPAKHPVRALILVPTRELAVQVEESVKAYAKHTNLRSLVVYGGVDIKTQT-- 124
Query: 148 LIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 207
P L+ G V+ILVATPGRL+DHI + L + LV+DE D
Sbjct: 125 ----PHLKTG---------------VEILVATPGRLLDHIE-QKTVLLNQVQMLVLDEAD 164
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L + L +L L LP SL
Sbjct: 165 RMLDMGFMPALKRILAL---------------LPRQRQSL-------------------- 189
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
+ SAT + + KL++ +++P + + E + + E K L LL
Sbjct: 190 ---MFSATFSNEIKKLSEDFMNYPTLIEVARSNASA-ENITQKVYLVEQSGKHQLLAQLL 245
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
+ ++ IVFT + + RL L G + G + Q R + L AF++G++
Sbjct: 246 RGDDAKQVIVFTKTKLTASRLAKQLQREG---VSADAIHGDKSQLERMQALDAFKQGRVA 302
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK-- 445
VL+++D RG+D++ + V+NY+ P + Y+HR GRT RAG G +L+ +E K
Sbjct: 303 VLIATDVAARGLDIDSLPMVINYEIPHAAEDYVHRIGRTGRAGASGTAISLVSPEEEKYL 362
Query: 446 -RFKKLLQK 453
+KL++K
Sbjct: 363 LEIEKLIKK 371
>gi|417364412|ref|ZP_12137345.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Hvittingfoss str. A4-620]
gi|353597290|gb|EHC54049.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Hvittingfoss str. A4-620]
Length = 452
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 125/429 (29%), Positives = 196/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LNPDILRAIAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 -----SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
+ R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITHQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 160 RML--------------------------------DMGFIHDIRRV-----LAKLPAKRQ 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ L +PL + R E++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLRNPLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GQGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|417381863|ref|ZP_12147999.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Johannesburg str. S5-703]
gi|353616624|gb|EHC67835.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Johannesburg str. S5-703]
Length = 397
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 125/429 (29%), Positives = 196/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LNPDILRAIAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 -----SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
+ R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITHQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 160 RML--------------------------------DMGFIHDIRRV-----LAKLPAKRQ 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ L +PL + R E++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLRNPLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GQGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|224582633|ref|YP_002636431.1| ATP-dependent RNA helicase rhlE [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|224467160|gb|ACN44990.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
subsp. enterica serovar Paratyphi C strain RKS4594]
Length = 488
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 124/429 (28%), Positives = 197/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LNPDILRAIAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 -----SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
+ R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITHQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR + K +
Sbjct: 160 RML--------------------------------DMGFIHDIRRVLAKLPAKRQ----- 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ L +PL + R E++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLRNPLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GQGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|260866964|ref|YP_003233366.1| RNA helicase RhlE [Escherichia coli O111:H- str. 11128]
gi|415824802|ref|ZP_11513036.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli OK1180]
gi|417193204|ref|ZP_12015051.1| ATP-dependent RNA helicase RhlE [Escherichia coli 4.0522]
gi|417209507|ref|ZP_12020791.1| ATP-dependent RNA helicase RhlE [Escherichia coli JB1-95]
gi|417590515|ref|ZP_12241230.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 2534-86]
gi|419195910|ref|ZP_13739314.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC8A]
gi|419202149|ref|ZP_13745371.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC8B]
gi|419887299|ref|ZP_14407895.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H8 str.
CVM9570]
gi|419894549|ref|ZP_14414445.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H8 str.
CVM9574]
gi|420088816|ref|ZP_14600676.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H8 str.
CVM9602]
gi|420094200|ref|ZP_14605802.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H8 str.
CVM9634]
gi|424769471|ref|ZP_18196698.1| RNA helicase RhlE [Escherichia coli O111:H8 str. CFSAN001632]
gi|257763320|dbj|BAI34815.1| RNA helicase RhlE [Escherichia coli O111:H- str. 11128]
gi|323175585|gb|EFZ61180.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli OK1180]
gi|345344461|gb|EGW76828.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 2534-86]
gi|378051718|gb|EHW14033.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC8A]
gi|378055793|gb|EHW18054.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC8B]
gi|386190385|gb|EIH79133.1| ATP-dependent RNA helicase RhlE [Escherichia coli 4.0522]
gi|386196132|gb|EIH90358.1| ATP-dependent RNA helicase RhlE [Escherichia coli JB1-95]
gi|388363164|gb|EIL27104.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H8 str.
CVM9570]
gi|388363386|gb|EIL27315.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H8 str.
CVM9574]
gi|394389606|gb|EJE66748.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H8 str.
CVM9602]
gi|394396885|gb|EJE73216.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H8 str.
CVM9634]
gi|421944120|gb|EKU01382.1| RNA helicase RhlE [Escherichia coli O111:H8 str. CFSAN001632]
Length = 454
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 125/429 (29%), Positives = 196/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR + K +
Sbjct: 160 RML--------------------------------DMGFIHDIRRVLTKLPAKRQ----- 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIC 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|395531966|ref|XP_003768044.1| PREDICTED: probable ATP-dependent RNA helicase DDX52 [Sarcophilus
harrisii]
Length = 618
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 126/454 (27%), Positives = 200/454 (44%), Gaps = 77/454 (16%)
Query: 28 PLDHLPCLDPRLKVA---LQNM---GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSG 81
P+ LD K+ LQN+ G + P+Q+ + I L R+L ++PTGSG
Sbjct: 168 PITSFQQLDQEYKIHSRLLQNILDAGFQTPTPIQM----QAIPVMLHGRELLASAPTGSG 223
Query: 82 KTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSI 141
KTL++++PI+ L + RAL++ PTR+LA Q I+ G + + + ++++
Sbjct: 224 KTLAFSIPILMQLKQPTNKGFRALIISPTRELASQTHRELVRISEGTGFRIHM-IHKAAV 282
Query: 142 ADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR-GFTLEHLCY 200
A + + P+ DILV TP RL+ + G L+++ +
Sbjct: 283 AAK--------------KFGPKS-----SKKFDILVTTPNRLIYLLKQDPPGIDLKNVEW 323
Query: 201 LVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK 260
LVVDE+D+L D + F D F+ A S K +RR
Sbjct: 324 LVVDESDKLF----------------EDGKTGFRDQLAFIFLACTSHK-VRRA------- 359
Query: 261 DKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL-K 319
+ SAT D + +L+L + + ++ G R E +E L S+ K
Sbjct: 360 ----------MFSATFAHDVEQWCKLNLDNVISISIG-ARNSAAETVEQELLFVGSETGK 408
Query: 320 PLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLK 379
L + L++ +VF S+E L L + G I + + Q R T+
Sbjct: 409 LLAMRDLIKKGFHPPVLVFVQSIERAKELFHELIYEG---INVDVIHAERTQQQRDNTVH 465
Query: 380 AFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439
+FR GKI VL+ + + RG+D +GVN V+NYD P YIHR GRT RAG G+ T
Sbjct: 466 SFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSAVEYIHRIGRTGRAGHKGKAVTFF 525
Query: 440 HKDEVKRFKKLLQKADNDSCPI-------HSIPS 466
+D+ + + CP+ H +PS
Sbjct: 526 TEDDKPLLRSVANVIQQAGCPVPEYIRSFHKLPS 559
>gi|297744770|emb|CBI38032.3| unnamed protein product [Vitis vinifera]
Length = 797
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 121/434 (27%), Positives = 196/434 (45%), Gaps = 58/434 (13%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L L A++ G + P+Q+A I GL +RD+ + TGSGKT ++ LP++ +
Sbjct: 313 LSTELLKAVERAGYKTPSPIQMAA----IPLGLQQRDVIGIAETGSGKTAAFVLPMLTYI 368
Query: 95 S-------NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISE 147
S A+V+ PTR+LA Q++D A +G+ V VG SI
Sbjct: 369 SRLPPMSEENEAEGPYAVVMAPTRELAQQIEDETVKFAHYLGIKVVSIVGGQSIE----- 423
Query: 148 LIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 207
E G ++ ++++ATPGRL+D + R L Y+V+DE D
Sbjct: 424 -------EQGF---------RIRQGCEVVIATPGRLIDCLE-RRYAVLNQCNYVVLDEAD 466
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R++ ++ + VL S N ++ + +K R
Sbjct: 467 RMIDMGFEPQVVGVLDAMPSSN--------------------LKPENEDEELDEKKIYRT 506
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
M SAT+ +LA+ L +P+ +T G T K + + + ++ + K L LL
Sbjct: 507 TYM-FSATMPPAVERLARKYLRNPVVVTIG-TAGKATDLITQHVIMMKESEKMFKLQKLL 564
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
LG++ IVF ++ +S L L+ G ++ G + Q R +L+ FR +
Sbjct: 565 DELGDKTAIVFINTKKSADNLAKGLDKAG---YRVTTLHGGKSQEQREISLEGFRTKRYN 621
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 447
VLV++D RG+D+ V +V+NYD P I+ Y HR GRT RAG+ G T L + F
Sbjct: 622 VLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLHDSDVF 681
Query: 448 KKLLQKADNDSCPI 461
L Q ++ P+
Sbjct: 682 YDLKQMLIQNNSPV 695
>gi|423128237|ref|ZP_17115916.1| ATP-dependent RNA helicase rhlE [Klebsiella oxytoca 10-5250]
gi|376393593|gb|EHT06249.1| ATP-dependent RNA helicase rhlE [Klebsiella oxytoca 10-5250]
Length = 449
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 126/429 (29%), Positives = 196/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LNPEILRAVAEQGYVEPTPIQ----QQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
+ R +RAL++ PTR+LA Q+ G V S + L+
Sbjct: 64 VQKEPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNVRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+S VDILVATPGRL+D H NA +L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRSGVDILVATPGRLLDLEHQNAV---SLDKVEVLVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 160 RML--------------------------------DMGFIHDIRRV-----LAKLPAKRQ 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + + LA+ LH+PL + R E++ + K K L ++
Sbjct: 183 -NLLFSATFSDEIKSLAEKLLHNPLEIEVAR-RNTASEQVSQLVHFVDKKRKRELLSQMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GEGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGGIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK-- 445
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE K
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 446 -RFKKLLQK 453
++LL+K
Sbjct: 358 HDIERLLKK 366
>gi|134296873|ref|YP_001120608.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
vietnamiensis G4]
gi|387903185|ref|YP_006333524.1| ATP-dependent RNA helicase RhlE [Burkholderia sp. KJ006]
gi|134140030|gb|ABO55773.1| DEAD/DEAH box helicase domain protein [Burkholderia vietnamiensis
G4]
gi|387578077|gb|AFJ86793.1| ATP-dependent RNA helicase RhlE [Burkholderia sp. KJ006]
Length = 486
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 130/452 (28%), Positives = 196/452 (43%), Gaps = 81/452 (17%)
Query: 29 LDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL 88
+ L +P +K A+ +G +S P+Q +G G DL + TG+GKT + L
Sbjct: 3 FESLGLAEPLVK-AVNELGYTSPTPIQQQAIPAVLGGG----DLLAGAQTGTGKTAGFTL 57
Query: 89 PIVQTLSN------RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIA 142
PI+Q L A R +RAL++ PTR+LA QV++ A + V L + G SI
Sbjct: 58 PILQRLHTFYTEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSI- 116
Query: 143 DEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLV 202
P+++A L+ VDI+VATPGRL+DH+ + L L LV
Sbjct: 117 --------NPQIDA------------LKRGVDIVVATPGRLLDHMQ-QKTIDLSDLDILV 155
Query: 203 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDK 262
+DE DR+L G + I+R K
Sbjct: 156 LDEADRML--------------------------------DMGFIHDIKRVLA------K 177
Query: 263 PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLY 322
PR ++ SAT + + LA L P + R E + + K
Sbjct: 178 LPPRRQNLLFSATFSDEIKALADSLLDSPALIEVAR-RNTTAETVAQKIHPVDRDRKREL 236
Query: 323 LVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR 382
L L++ + +VFT + +RL L G I G + QS R++ L F+
Sbjct: 237 LTHLIREHNWFQVLVFTRTKHGANRLAEQLTKDG---ISAMAIHGNKSQSARTRALAEFK 293
Query: 383 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD 442
+QVLV++D RG+D++ + +VVN+D P + Y+HR GRT RAG G +L+ D
Sbjct: 294 NNTLQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVD 353
Query: 443 EVKRFKKLLQKADNDSCPIHSIPSSLIESLRP 474
E K+LL+ D + IP +I P
Sbjct: 354 E----KQLLR--DIERLIKREIPQEVIAGFEP 379
>gi|449308931|ref|YP_007441287.1| ATP-dependent RNA helicase RhlE [Cronobacter sakazakii SP291]
gi|449098964|gb|AGE86998.1| ATP-dependent RNA helicase RhlE [Cronobacter sakazakii SP291]
Length = 444
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 121/423 (28%), Positives = 194/423 (45%), Gaps = 77/423 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G + P+Q ++ I L +DL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPEILRAIAEQGYNEPTPIQ----RQAIPVVLSGKDLMASAQTGTGKTAGFTLPLLQRL 63
Query: 95 SN-----RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
+ + R +RAL++ PTR+LA QV G V + S +I L+
Sbjct: 64 TANQPHPKGRRPVRALILTPTRELAAQV---------------GENVREYSKYLDIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+L+ATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLIATPGRLLDLEHQNAVK---LDQVEVLVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR K P+
Sbjct: 160 RML--------------------------------DMGFIHDIRRVLA------KLPPKR 181
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+P + R E++ + + K K L L+
Sbjct: 182 QNLLFSATFSDDIKSLAEKLLHNPEEVEVAR-RNTASEQVTQHVHFVDKKRKRELLSYLI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I G + Q R++ L F+ G I+
Sbjct: 241 GDGNWQQVLVFTRTKHGANHLAEQLNKDG---ITAAAIHGNKSQGARTRALADFKTGGIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 447
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE K
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 448 KKL 450
+ +
Sbjct: 358 RDI 360
>gi|421498297|ref|ZP_15945417.1| ATP-dependent RNA helicase RhlE [Aeromonas media WS]
gi|407182701|gb|EKE56638.1| ATP-dependent RNA helicase RhlE [Aeromonas media WS]
Length = 417
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 112/421 (26%), Positives = 185/421 (43%), Gaps = 72/421 (17%)
Query: 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQT 93
L PRL+ L +G ++ P+Q + I L RDL + TG+GKT ++ LP+++
Sbjct: 10 ALSPRLQQTLCELGYAAPTPIQAS----AIPVILAGRDLLAGAQTGTGKTAAFVLPLLEQ 65
Query: 94 L----SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
L + R +RALV++PTR+LA+QV + L+ L G SIA ++
Sbjct: 66 LMQQPQGESPRPIRALVLVPTRELAVQVFESVVRYGQGTDLTSALVYGGVSIAAQV---- 121
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209
+ L++ VD+L+ATPGRL+DH+ L L +LV DE DR+
Sbjct: 122 -----------------EALKNGVDLLIATPGRLLDHLRQG-ALRLGSLSHLVFDEADRM 163
Query: 210 LREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVK 269
L + + +L+ +D + A T + F K + R P L++
Sbjct: 164 LDMGFMDEIKALLKQIPADRQTLLFSA-TCDDNLFALSKVLLRD-----------PELIE 211
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329
+ P ++ ++ G+ + L E + + K
Sbjct: 212 VA--------PRNTTAAEVEQRVYAVDGDRKLALVEHMLTVK------------------ 245
Query: 330 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 389
G ++F+ + + +L G+ I + G QS R K L FR G +Q L
Sbjct: 246 -GWAPALIFSRTRQGADKLA---QQLGKAGINALAFHGDLSQSAREKVLLEFRAGTLQAL 301
Query: 390 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKK 449
V++D RG+D+ +N V+N + P + Y+HR GRT RAG G TL ++ +K
Sbjct: 302 VATDVAARGLDISDLNYVINLEFPFVAEDYVHRIGRTGRAGNKGLAITLFSPEDAPLLEK 361
Query: 450 L 450
+
Sbjct: 362 V 362
>gi|416771944|ref|ZP_11873090.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008287]
gi|323268735|gb|EGA52195.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
Length = 404
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 124/429 (28%), Positives = 197/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LNPDILRAIAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 -----SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
+ R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITHQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR + K +
Sbjct: 160 RML--------------------------------DMGFIHDIRRVLAKLPAKRQ----- 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ L +PL + R E++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLRNPLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GQGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|417340297|ref|ZP_12121649.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Baildon str. R6-199]
gi|417527880|ref|ZP_12184955.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Urbana str. R8-2977]
gi|353668359|gb|EHD05564.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Urbana str. R8-2977]
gi|357959299|gb|EHJ83588.1| ATP-dependent RNA helicase RhlE, partial [Salmonella enterica
subsp. enterica serovar Baildon str. R6-199]
Length = 398
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 125/429 (29%), Positives = 196/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LNPDILRAIAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 -----SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
+ R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITHQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 160 RML--------------------------------DMGFIHDIRRV-----LAKLPAKR- 181
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ L +PL + R E++ + + K K L ++
Sbjct: 182 QNLLFSATFSDDIKALAEKLLRNPLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GQGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|213620634|ref|ZP_03373417.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
Length = 402
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 125/429 (29%), Positives = 196/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LNPDILRAIAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 -----SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
+ R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITHQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 160 RML--------------------------------DMGFIHDIRRV-----LAKLPAKR- 181
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ L +PL + R E++ + + K K L ++
Sbjct: 182 QNLLFSATFSDDIKALAEKLLRNPLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GQGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|269125451|ref|YP_003298821.1| DEAD/DEAH box helicase domain-containing protein [Thermomonospora
curvata DSM 43183]
gi|268310409|gb|ACY96783.1| DEAD/DEAH box helicase domain protein [Thermomonospora curvata DSM
43183]
Length = 565
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 126/465 (27%), Positives = 205/465 (44%), Gaps = 83/465 (17%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101
AL++ GI FP+Q + + GL D+ + TG+GKTL++ +P++Q + + +
Sbjct: 40 ALESEGIVDAFPIQ----EMALPIGLRGYDIIGQARTGTGKTLAFGIPLLQRIEHGG-KA 94
Query: 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD 161
R LV+ PTR+LA QV D L G +G +A + G Y+
Sbjct: 95 PRGLVLAPTRELASQVTDDL--------LVAGGKLGTRVVA-----------VYGGRAYE 135
Query: 162 PEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPT 220
P+ +Q L+ VD++V TPGRL+D A +G L + LV+DE DR+L + +
Sbjct: 136 PQ--IQALRDGVDVVVGTPGRLLDL--ARQGHLDLSQIQMLVLDEADRMLDLGFLPDIER 191
Query: 221 VLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP 280
+++L ++ + M+ SAT+ +
Sbjct: 192 IIELVPAERQT--------------------------------------MLFSATMPGEI 213
Query: 281 NKLAQLDLHHPLFLTTG-ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFT 339
L++ L+ P + T + ++ + KP L LLQ+ G +VF
Sbjct: 214 VALSRRYLNRPTNVRAEVHTESEATPQVTQHVFQTHPMDKPEVLARLLQANGRGLTMVFC 273
Query: 340 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 399
+ + R+ L G G Q R + L+AFR GK+ VLV++D RG+
Sbjct: 274 QTKRACDRIAADLTRRG---FAAAAVHGDLGQGQRERALRAFRSGKVDVLVATDVAARGL 330
Query: 400 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFK---KLLQKADN 456
DVE V +V+NY+ P +T++HR GRT RAG+ G TL+ ++ R+K LQ
Sbjct: 331 DVEDVTHVINYECPDSAETHVHRIGRTGRAGREGTAVTLVDWSDLPRWKLINNALQLPFG 390
Query: 457 DSCPIHSIPSSLIESLR---------PVYKSVRGGISDEAFWKVG 492
+ +S L E+L P + R G+ E +G
Sbjct: 391 EPPETYSTSDHLYEALDIPREATGTLPKERRGRAGLEAEELEDIG 435
>gi|156086188|ref|XP_001610503.1| DEAD/DEAH box helicase family protein [Babesia bovis T2Bo]
gi|154797756|gb|EDO06935.1| DEAD/DEAH box helicase family protein [Babesia bovis]
Length = 497
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 127/438 (28%), Positives = 192/438 (43%), Gaps = 79/438 (18%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFER------DLCINSPTGSGKTLSYALPI 90
P L + L+ GI+ LFPVQ V I + +R D+ I +PTG G
Sbjct: 44 PHLLLLLERHGITDLFPVQKQVIPWLINCDVLDRFSSSACDIVITAPTGQG--------- 94
Query: 91 VQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIK 150
R L AL++ PTR+L Q D +S+ D +
Sbjct: 95 ---------RGLCALILAPTRELVKQTYD----------FCTWFLEDDASVYDLKGGTLL 135
Query: 151 RPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHIN---ATRGFTLEH--LCYLVVDE 205
R L G +D L+ + I++ TPGR ++H N ++ G L++ + ++V+DE
Sbjct: 136 RAHLCYGSTSFVDDHTYLLEHSPQIVLFTPGRFVEHYNHRNSSCGKILDYSSIRWMVIDE 195
Query: 206 TDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYP 265
D LL ++Y W V ++R E + + L ++F P
Sbjct: 196 VDMLLSQSYFNWTSVVTSISRECQEKQ-----SLLDTSF------------------PVV 232
Query: 266 RLVKMVLSATLTQDPNKLAQLDL---HHPLFLTT-GETRYKLPERLESYKLICESKLKPL 321
R K+++SAT+ P K A++DL + PL + + + Y LP L + + KPL
Sbjct: 233 RPQKILVSATI---PTKSAEIDLIQLNRPLLMKSRSQALYSLPANLTQWYIKTTKNNKPL 289
Query: 322 YLVALLQSLGE-----EKCIVFTSSVESTHRLCTLLN----HFGELRIKIKEYSGLQRQS 372
L LL + +K IVF S ++ H + +L H G ++ E S Q
Sbjct: 290 VLAKLLLHIMANGSTGDKTIVFCSYRQTAHAMVRMLELFSIHTGH-NLRSLELSASLSQK 348
Query: 373 VRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL 432
R + FR+G LV SD +RGM+ NV+NYD P I YIHR GRTARA +
Sbjct: 349 QRHDVVDMFRKGDSFCLVCSDVASRGMNFSNTRNVINYDFPTSIAKYIHRIGRTARAYES 408
Query: 433 GRCFTLLHKDEVKRFKKL 450
G + LL +V F+K
Sbjct: 409 GNSYILLTGQQVVGFQKF 426
>gi|421887362|ref|ZP_16318522.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Senftenberg str. SS209]
gi|379983078|emb|CCF90795.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Senftenberg str. SS209]
Length = 453
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 123/429 (28%), Positives = 197/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LNPDILRAIAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 -----SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
+ R +RAL++ PTR+LA Q+ G V S + L+
Sbjct: 64 ITHQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNVRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR + K +
Sbjct: 160 RML--------------------------------DMGFIHDIRRVLAKLPAKRQ----- 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ L +PL + R E++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLRNPLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GQGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|390605167|gb|EIN14558.1| DEAD-domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 808
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 118/405 (29%), Positives = 182/405 (44%), Gaps = 87/405 (21%)
Query: 70 RDLCINSPTGSGKTLSYALPIVQTLSNRA---VRCLRALVVLPTRDLALQVKDVFAAIAP 126
+D+ + TGSGKTL++ +P+++ L R L AL++ PTR+LA+Q+ +V +I
Sbjct: 93 KDVLGAARTGSGKTLAFLVPVLELLYRRKWGPQDGLGALIISPTRELAVQIFEVLRSIGG 152
Query: 127 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDH 186
S GL +G ++ DE L + ++ILVATPGRL+ H
Sbjct: 153 YHNFSAGLVIGGKNLKDERDRLGR----------------------MNILVATPGRLLQH 190
Query: 187 INATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS 246
++ T GF ++L LV+DE DR+L + L +L + LP +
Sbjct: 191 MDQTIGFDCDNLQILVLDEADRILDMGFSRTLSALL---------------SHLPKGRQT 235
Query: 247 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT---GETRYK- 302
L + SAT TQ LA+L L +P+F++T E K
Sbjct: 236 L-----------------------LFSATQTQSVQDLARLSLQNPVFVSTQHASEINTKD 272
Query: 303 -----------LPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVEST----HR 347
+P+ LE + ++CE K L + ++S K +VF SS +
Sbjct: 273 PSKISLTSTDFIPKTLEQHYVVCELDQKLNLLFSFIKSHLTSKTLVFLSSCKQVRFVFET 332
Query: 348 LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV 407
C L H G + + G Q+Q R + F K VL ++D +RG+D GV+ V
Sbjct: 333 FCKL--HPG---VPLMHLHGKQKQQTRIDIYQKFIASKHSVLFATDIASRGLDFPGVDWV 387
Query: 408 VNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 452
V D P TY+HR GRTAR G+ +L E + +LL+
Sbjct: 388 VQVDAPEDADTYVHRVGRTARYESEGKALLVLCPSEEEGMLRLLE 432
>gi|156934713|ref|YP_001438629.1| ATP-dependent RNA helicase RhlE [Cronobacter sakazakii ATCC
BAA-894]
gi|156532967|gb|ABU77793.1| hypothetical protein ESA_02548 [Cronobacter sakazakii ATCC BAA-894]
Length = 474
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 121/423 (28%), Positives = 194/423 (45%), Gaps = 77/423 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G + P+Q ++ I L +DL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPEILRAIAEQGYNEPTPIQ----RQAIPVVLSGKDLMASAQTGTGKTAGFTLPLLQRL 63
Query: 95 SN-----RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
+ + R +RAL++ PTR+LA QV G V + S +I L+
Sbjct: 64 TANQPHPKGRRPVRALILTPTRELAAQV---------------GENVREYSKYLDIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+L+ATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLIATPGRLLDLEHQNAVK---LDQVEVLVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR K P+
Sbjct: 160 RML--------------------------------DMGFIHDIRRVLA------KLPPKR 181
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+P + R E++ + + K K L L+
Sbjct: 182 QNLLFSATFSDDIKSLAEKLLHNPEEVEVAR-RNTASEQVTQHVHFVDKKRKRELLSYLI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I G + Q R++ L F+ G I+
Sbjct: 241 GDGNWQQVLVFTRTKHGANHLAEQLNKDG---ITAAAIHGNKSQGARTRALADFKTGGIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 447
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE K
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 448 KKL 450
+ +
Sbjct: 358 RDI 360
>gi|119351039|gb|ABL63415.1| ATP-dependent RNA helicase [Rattus norvegicus]
Length = 598
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 125/448 (27%), Positives = 199/448 (44%), Gaps = 70/448 (15%)
Query: 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSP 77
P ++ F+ LD + PRL LQN+ + + F V + + I L R+L ++P
Sbjct: 158 PDPIATFQQ--LDQEYKISPRL---LQNI-LDAGFQVPTPIQMQAIPVMLHGRELLASAP 211
Query: 78 TGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVG 137
TGSGKTL++++PI+ L + RALV+ PTR+LA Q+ I+ G + + +
Sbjct: 212 TGSGKTLAFSIPILMQLKQPTNKGFRALVISPTRELASQIHRELIKISEGTGFRIHM-IH 270
Query: 138 QSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR-GFTLE 196
++++A + + P+ DILV TP RL+ + G L
Sbjct: 271 KAAVAAK--------------KFGPKS-----SKKFDILVTTPNRLIYLLKQEPPGIDLT 311
Query: 197 HLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSD--ASTFLPSAFGSLKTIRRCG 254
+ +LVVDE+D+L D + F D AS FL
Sbjct: 312 SVEWLVVDESDKLF----------------EDGKTGFRDQLASIFLACT----------- 344
Query: 255 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC 314
P++ + + SAT D + +L+L + + ++ G R E +E L
Sbjct: 345 ---------SPKVRRAMFSATFAYDVEQWCKLNLDNIVSVSIG-ARNSAVETVEQELLFV 394
Query: 315 ESKL-KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSV 373
S+ K L + L++ +VF S+E L L + G I + + Q
Sbjct: 395 GSETGKLLAMRELVKKGFNPPVLVFVQSIERAKELFHELIYEG---INVDVIHAERTQQQ 451
Query: 374 RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 433
R T+ +FR GKI VL+ + + RG+D +GVN V+NYD P YIHR GRT RAG G
Sbjct: 452 RDNTVHSFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNRG 511
Query: 434 RCFTLLHKDEVKRFKKLLQKADNDSCPI 461
+ T +D+ + + CP+
Sbjct: 512 KAVTFFTEDDKPLLRSVANVIQQAGCPV 539
>gi|147899081|ref|NP_001086608.1| ATP-dependent RNA helicase DDX55 [Xenopus laevis]
gi|82199952|sp|Q6AZV7.1|DDX55_XENLA RecName: Full=ATP-dependent RNA helicase DDX55; AltName: Full=DEAD
box protein 55
gi|50603912|gb|AAH77172.1| Ddx55-prov protein [Xenopus laevis]
Length = 594
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 135/486 (27%), Positives = 218/486 (44%), Gaps = 97/486 (19%)
Query: 30 DHLPC-LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL 88
D LP L+ ++ L+ + + + PVQ A TI + +D+ + TGSGKTL++ +
Sbjct: 10 DSLPQKLNGSIRRTLEELKFTHMTPVQSA----TIPLFMNNKDIAAEAITGSGKTLAFVI 65
Query: 89 PIVQTLSNRAVRCLR----ALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIAD 143
P+++ L R + + AL++ PTR+LA+Q+ +V + S L +G S+ D
Sbjct: 66 PLLEILLKREEKLKKNQVGALIITPTRELAVQIDEVLSCFTKHFPQFSQILLIGGSNPVD 125
Query: 144 EISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHI-NATRGFTL----EHL 198
DV + + +I+VATPGRL D G L + L
Sbjct: 126 --------------------DVRKFKEHGGNIIVATPGRLEDMFRRQADGLDLVICVKTL 165
Query: 199 CYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERG 258
L++DE DRLL ++A + T+L FLP RR G
Sbjct: 166 DVLILDEADRLLDMGFEASINTIL---------------GFLPKQ-------RRTG---- 199
Query: 259 FKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE------TRYKLPERLESYKL 312
+ SAT TQ+ L + L +P+ + E + K P RL++Y +
Sbjct: 200 ------------LFSATQTQELENLVRAGLRNPVRIAVKEKGVAATSTQKTPIRLQNYYM 247
Query: 313 ICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGL--- 368
IC++ K L+A LQ +EK +VF S+ C + ++G+ L + +K +
Sbjct: 248 ICKADEKFNKLIAFLQKRKQEKHLVFFST-------CACVEYYGKALEMLLKPVKVMCIH 300
Query: 369 -QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 427
+ + R++ FR+ +LV +D M RG+D+ VN VV YD P+ ++HR GRTA
Sbjct: 301 GKMKHKRNRIFTEFRKINSGILVCTDVMARGIDIHEVNWVVQYDPPSSASAFVHRCGRTA 360
Query: 428 RAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIE-SLRPVYKSVRGGISDE 486
R G G L E L + N CP+ + +I L P K++ +D
Sbjct: 361 RIGHHGSALVFLLPMEESYVSFL---SINQKCPLQEMTELIISVDLLPKLKAM--AETDR 415
Query: 487 AFWKVG 492
A ++ G
Sbjct: 416 AVFEKG 421
>gi|226942043|ref|YP_002797117.1| RhlE3 [Laribacter hongkongensis HLHK9]
gi|226716970|gb|ACO76108.1| RhlE3 [Laribacter hongkongensis HLHK9]
Length = 582
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 120/420 (28%), Positives = 188/420 (44%), Gaps = 76/420 (18%)
Query: 32 LPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIV 91
L +DP L+ A+ G + P+Q +E I P L RDL + TG+GKT +ALP++
Sbjct: 9 LQLVDPLLR-AITEAGYTEPTPIQ----REAIAPVLAGRDLMAAAQTGTGKTAGFALPLL 63
Query: 92 QTLS------NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEI 145
Q L+ + A R R LV+ PTR+LA QV + A + + L+ + G + +I
Sbjct: 64 QRLAATHPHPHPAGRP-RGLVLTPTRELAAQVGESIATLGTHLPLTSLVIFGGVRVKPQI 122
Query: 146 SELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 205
L +R VDIL+ATPGRL+D + L + LV+DE
Sbjct: 123 EALTQR---------------------VDILIATPGRLID-LAKQEAVDLSGVEILVLDE 160
Query: 206 TDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYP 265
DR+L + + VL+L ++ +N
Sbjct: 161 ADRMLDMGFIRDVRKVLKLLPAERQN---------------------------------- 186
Query: 266 RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVA 325
++ SAT D LA LH P + E + + + + K L
Sbjct: 187 ----LLFSATFNDDIKALADTFLHDPQLVEVSPPNSTT-ELVTHHVHLVDRNRKRELLTH 241
Query: 326 LLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 385
L++S ++ +VFT + +RL +L G I G + Q R++ L F++G
Sbjct: 242 LVESRQWQQVLVFTRTKHGANRLAEVLAKGG---IPAAAIHGNKSQGARTRALSEFKDGS 298
Query: 386 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 445
++VLV++D RG+D+ + VVNY+ P + Y+HR GRT RAG G +L+ DE+K
Sbjct: 299 LRVLVATDIAARGIDISELPQVVNYELPNVPEDYVHRIGRTGRAGSPGEAVSLVCVDELK 358
>gi|119351037|gb|ABL63414.1| ATP-dependent RNA helicase [Rattus norvegicus]
Length = 598
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 125/448 (27%), Positives = 199/448 (44%), Gaps = 70/448 (15%)
Query: 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSP 77
P ++ F+ LD + PRL LQN+ + + F V + + I L R+L ++P
Sbjct: 158 PDPIATFQQ--LDQEYKISPRL---LQNI-LDAGFQVPTPIQMQAIPVMLHGRELLASAP 211
Query: 78 TGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVG 137
TGSGKTL++++PI+ L + RALV+ PTR+LA Q+ I+ G + + +
Sbjct: 212 TGSGKTLAFSIPILMQLKQPTNKGFRALVISPTRELASQIHRELIKISEGTGFRIHM-IH 270
Query: 138 QSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR-GFTLE 196
++++A + + P+ DILV TP RL+ + G L
Sbjct: 271 KAAVAAK--------------KFGPKS-----SKKFDILVTTPNRLIYLLKQEPPGIDLT 311
Query: 197 HLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSD--ASTFLPSAFGSLKTIRRCG 254
+ +LVVDE+D+L D + F D AS FL
Sbjct: 312 SVEWLVVDESDKLF----------------EDGKTGFRDQLASIFLACT----------- 344
Query: 255 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC 314
P++ + + SAT D + +L+L + + ++ G R E +E L
Sbjct: 345 ---------SPKVRRAMFSATFAYDVEQWCKLNLDNIVSVSIG-ARNSAVETVEQELLFV 394
Query: 315 ESKL-KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSV 373
S+ K L + L++ +VF S+E L L + G I + + Q
Sbjct: 395 GSETGKLLAMRELVKKGFNPPVLVFVQSIERAKELFHELIYEG---INVDVIHAERTQQQ 451
Query: 374 RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 433
R T+ +FR GKI VL+ + + RG+D +GVN V+NYD P YIHR GRT RAG G
Sbjct: 452 RDNTVHSFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNRG 511
Query: 434 RCFTLLHKDEVKRFKKLLQKADNDSCPI 461
+ T +D+ + + CP+
Sbjct: 512 KAVTFFTEDDKPLLRSVANVIQQAGCPV 539
>gi|429122441|ref|ZP_19183020.1| ATP-dependent RNA helicase RhlE [Cronobacter sakazakii 680]
gi|426323043|emb|CCK13757.1| ATP-dependent RNA helicase RhlE [Cronobacter sakazakii 680]
Length = 467
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 121/423 (28%), Positives = 194/423 (45%), Gaps = 77/423 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G + P+Q ++ I L +DL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPEILRAIAEQGYNEPTPIQ----RQAIPVVLSGKDLMASAQTGTGKTAGFTLPLLQRL 63
Query: 95 SN-----RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
+ + R +RAL++ PTR+LA QV G V + S +I L+
Sbjct: 64 TANQPHPKGRRPVRALILTPTRELAAQV---------------GENVREYSKYLDIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+L+ATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLIATPGRLLDLEHQNAVK---LDQVEVLVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR K P+
Sbjct: 160 RML--------------------------------DMGFIHDIRRVLA------KLPPKR 181
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+P + R E++ + + K K L L+
Sbjct: 182 QNLLFSATFSDDIKSLAEKLLHNPEEVEVAR-RNTASEQVTQHVHFVDKKRKRELLSYLI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I G + Q R++ L F+ G I+
Sbjct: 241 GDGNWQQVLVFTRTKHGANHLAEQLNKDG---ITAAAIHGNKSQGARTRALADFKTGGIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 447
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE K
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 448 KKL 450
+ +
Sbjct: 358 RDI 360
>gi|255961279|ref|YP_346703.3| ATP-dependent RNA helicase RhlB [Pseudomonas fluorescens Pf0-1]
gi|77381201|gb|ABA72714.1| ATP-dependent RNA helicase [Pseudomonas fluorescens Pf0-1]
Length = 492
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 138/486 (28%), Positives = 207/486 (42%), Gaps = 91/486 (18%)
Query: 6 KKSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGP 65
K PV+PW V E H L P L A+ ++G P+Q V +G
Sbjct: 80 KPKAPVIPWKLEDFVVEPQEGKTRFHDFKLAPELMHAIHDLGFPYCTPIQAQV----LGY 135
Query: 66 GLFERDLCINSPTGSGKTLSYALPIVQTL------SNRAVRCLRALVVLPTRDLALQVKD 119
L +D + TG+GKT ++ + I+ L R + RAL++ PTR+L +Q+
Sbjct: 136 TLAGKDAIGRAQTGTGKTAAFLISIITQLLQTPPPKERYMGEPRALIIAPTRELVVQIAK 195
Query: 120 VFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179
A + GL+V VG ++ LEA C DILVAT
Sbjct: 196 DAADLTKYTGLNVMTFVGGMDFDKQLKH------LEARHC--------------DILVAT 235
Query: 180 PGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTF 239
PGRL+D N L+ + +V+DE DR+L + +P V Q+ R S+ T
Sbjct: 236 PGRLLD-FNQRGDVHLDMVEVMVLDEADRMLDMGF---IPQVRQIIRQTPPK--SERQTL 289
Query: 240 LPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP-------NKLAQLDLHHPL 292
L SA F D M L+ T DP +A ++ +
Sbjct: 290 LFSA--------------TFTDD------VMNLAKQWTTDPAIVEIEVTNVANENVEQHI 329
Query: 293 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352
+ G +YKL L L+ G E+ IVF + + R+ L
Sbjct: 330 YAVAGADKYKL-------------------LFNLVNDNGWERVIVFANRKDEVRRIEERL 370
Query: 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 412
G I + SG Q R KTL+ FREGKI+VLV++D RG+ ++G+++V+N+
Sbjct: 371 VRDG---INAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTL 427
Query: 413 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF----KKLLQKADNDSCPIHSIPSSL 468
P Y+HR GRT RAG G + +D+ + +KL +K ++ P H +
Sbjct: 428 PEVPDDYVHRIGRTGRAGADGVSISFAGEDDSYQLPSIEEKLGRKISCETPPTHLL--RA 485
Query: 469 IESLRP 474
+E RP
Sbjct: 486 VERKRP 491
>gi|260597188|ref|YP_003209759.1| ATP-dependent RNA helicase RhlE [Cronobacter turicensis z3032]
gi|260216365|emb|CBA29399.1| Putative ATP-dependent RNA helicase rhlE [Cronobacter turicensis
z3032]
Length = 500
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 123/429 (28%), Positives = 200/429 (46%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G + P+Q ++ I L +DL ++ TG+GKT + LP++Q L
Sbjct: 10 LSPEILRAIAEQGYNEPTPIQ----RQAIPVVLSGKDLMASAQTGTGKTAGFTLPLLQRL 65
Query: 95 SNRAV-----RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
+ +A R +RAL++ PTR+LA QV G V + S +I L+
Sbjct: 66 TAKAPHAQGRRPVRALILTPTRELAAQV---------------GENVREYSKYLDIRSLV 110
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+S VD+L+ATPGRL+D H NA + L+ + LV+DE D
Sbjct: 111 ----VFGGVSINPQ--MMKLRSGVDVLIATPGRLLDLEHQNAVK---LDQVEVLVLDEAD 161
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR K P+
Sbjct: 162 RML--------------------------------DMGFIHDIRRVLA------KLPPKR 183
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ L +P + R E++ + + K K L L+
Sbjct: 184 QNLLFSATFSDDIKTLAEKLLRNPEEVEVAR-RNTASEQITQHVHFVDKKRKRELLSYLI 242
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I G + Q R++ L F+ G I+
Sbjct: 243 GDGNWQQVLVFTRTKHGANHLAEQLNKDG---ITAAAIHGNKSQGARTRALADFKTGGIR 299
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 300 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 359
Query: 445 KRFKKLLQK 453
+ +++LQ+
Sbjct: 360 RDIERVLQR 368
>gi|321250140|ref|XP_003191703.1| hypothetical protein CGB_A8530W [Cryptococcus gattii WM276]
gi|317458170|gb|ADV19916.1| Hypothetical protein CGB_A8530W [Cryptococcus gattii WM276]
Length = 860
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 121/431 (28%), Positives = 195/431 (45%), Gaps = 72/431 (16%)
Query: 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSP 77
P +++LF + P+ + + L++ + P+Q I P L RD+ ++
Sbjct: 56 PSEITLFSELPMSS------KTQKGLKSSHFLNPTPIQSLA----IPPALQARDILGSAK 105
Query: 78 TGSGKTLSYALPIVQTLSNRA---VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGL 134
TGSGKTL++ +P+++ L + L A+V+ PTR+LA+Q I S GL
Sbjct: 106 TGSGKTLAFLIPLLERLYLEKWGPMDGLGAVVISPTRELAVQTFMQLRDIGKYHNFSAGL 165
Query: 135 AVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194
+G + +E QE ++IL+ATPGRL+ H+++T GF
Sbjct: 166 VIGGKPLKEE----------------------QERLGRMNILIATPGRLLQHLDSTVGFD 203
Query: 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCG 254
+ LV+DE DRLL + L ++ + FS T A GS
Sbjct: 204 PSAVKVLVLDEADRLLDLGFLPALKAIV--------SHFSPVQT----APGS-------- 243
Query: 255 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYK--LPERLESYKL 312
P ++ SAT ++D LA+L LH PL+++ + + +P LE Y
Sbjct: 244 ---------RPSRQTLLFSATQSKDLAALAKLSLHEPLYISCNKPGEEGVMPANLEQYYA 294
Query: 313 IC--ESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELR--IKIKEYSGL 368
+ E KL L+ ++S + K IVF +S + ++ + F L + + G
Sbjct: 295 VVPLERKLDALW--GFVKSHLKMKGIVFVTSGKQVRQVRFIFETFRRLHPGLPLMHLHGK 352
Query: 369 QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 428
Q+Q R + F K +L+ +D RG+D V+ V+ D P + TYIHR GRTAR
Sbjct: 353 QKQPTRLDIFQRFSSSKSALLICTDVAARGLDFPAVDWVIQLDCPDDVDTYIHRVGRTAR 412
Query: 429 AGQLGRCFTLL 439
G T+L
Sbjct: 413 YQSAGTALTIL 423
>gi|209694151|ref|YP_002262079.1| ATP-dependent RNA helicase SrmB [Aliivibrio salmonicida LFI1238]
gi|208008102|emb|CAQ78243.1| ATP-dependent RNA helicase SrmB [Aliivibrio salmonicida LFI1238]
Length = 416
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 134/449 (29%), Positives = 206/449 (45%), Gaps = 79/449 (17%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P L AL+ +G P QV I L +D+ ++PTG+GK+ ++ LP +Q L
Sbjct: 10 LSPNLLRALEEIGYQR--PTQVQAM--AIPEALEGKDILASAPTGTGKSAAFLLPALQHL 65
Query: 95 SNRAVR---CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
+ R R L++ PTR+LA+QV D +A V G
Sbjct: 66 DDFPRRDPGPARVLILTPTRELAIQVADEARELAKYTHHKVFTITG-------------- 111
Query: 152 PKLEAGICY-DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 210
GI Y + D+L Q DI+VATPGRLM++I A R F + L++DE DR+L
Sbjct: 112 -----GISYQEHADILARTQ---DIVVATPGRLMEYIEAER-FDCRAIETLILDEADRML 162
Query: 211 REAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270
+ P V +L++ E R+ TFL SA T+ GV+ GF
Sbjct: 163 DMGFG---PVVDRLSK---ECRWR-KQTFLFSA-----TLEGRGVD-GF----------- 198
Query: 271 VLSATLTQDPNKL-AQLDLHHPLFLTTGETRY-KLPERLESYKLICESKLKPLYLVALLQ 328
+A L +P K+ A+ +T R LP ++E K I ++
Sbjct: 199 --TADLLNEPAKIVAEPSRRERKKITQWYHRADSLPHKIELLKSILTNQT---------- 246
Query: 329 SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 388
E+ IVF V++ RL L H +I G Q R+ + FR+GK+ V
Sbjct: 247 ----ERAIVF---VKTRERLAELRGHLETAKISCAWLQGEMPQESRNNAISRFRDGKVNV 299
Query: 389 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFK 448
L+++D RG+D+ V++V+N+D P Y+HR GRTARAG+ G +L+ + K +
Sbjct: 300 LIATDVAARGIDLPDVSHVINFDMPRTADVYLHRIGRTARAGKKGNAVSLIEAHDQKMME 359
Query: 449 KLLQKADNDSCPIHSIPSSLIESLRPVYK 477
++ + + I +E L+P +K
Sbjct: 360 RVGRYVKEED---EIIKERFVEGLKPTHK 385
>gi|255261571|ref|ZP_05340913.1| putative ATP-dependent RNA helicase RhlE [Thalassiobium sp. R2A62]
gi|255103906|gb|EET46580.1| putative ATP-dependent RNA helicase RhlE [Thalassiobium sp. R2A62]
Length = 499
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 123/422 (29%), Positives = 194/422 (45%), Gaps = 82/422 (19%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LD ++ A+++ G + P+Q I P L RD+ + TG+GKT S+ LP++ L
Sbjct: 9 LDRKVLSAVEDAGYTEPTPIQAGA----IPPALEGRDVLGIAQTGTGKTASFTLPMISML 64
Query: 95 S-NRA-VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
RA R R+LV+ PTR+LA QV + F A L+ L +G
Sbjct: 65 KRGRARARMPRSLVLAPTRELAAQVAENFDVYAKNTKLTKALLIG--------------- 109
Query: 153 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLR 211
G+ + +D L + VD+L+ATPGRL+DH RG L + +VVDE DR+L
Sbjct: 110 ----GVSFKEQDQL--IDRGVDVLIATPGRLLDHFE--RGKLLLTGVQIMVVDEADRMLD 161
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
F+P +ER F P+ R +
Sbjct: 162 MG-------------------------FIPD------------IERIFGLTPFTRQT-LF 183
Query: 272 LSATLTQDPNKLAQLDLHHPLFL------TTGETRYKLPERLESYKLICESKLKPLYLVA 325
SAT+ + ++ L +P + TT +T + + + ES K L
Sbjct: 184 FSATMAPEIERITNTFLSNPAKVEVARAATTSDTITQSVVMFKGSRKDRESSEKRQLLRT 243
Query: 326 LLQSLGEEKC---IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR 382
++++ G+ KC I+F + + + +G + G QS R +TL AFR
Sbjct: 244 MIENEGD-KCRNGIIFCNRKVDVDIVAKSMKKYG---LDASPIHGDLDQSKRMETLAAFR 299
Query: 383 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL-LHK 441
+G ++ LV+SD RG+D+ V++V NYD P++ + Y+HR GRT RAG+LG + + +
Sbjct: 300 DGTLRFLVASDVAARGLDIPNVSHVFNYDVPSHAEDYVHRIGRTGRAGKLGTAMMICVPR 359
Query: 442 DE 443
DE
Sbjct: 360 DE 361
>gi|366994109|ref|XP_003676819.1| hypothetical protein NCAS_0E03920 [Naumovozyma castellii CBS 4309]
gi|342302686|emb|CCC70462.1| hypothetical protein NCAS_0E03920 [Naumovozyma castellii CBS 4309]
Length = 437
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 123/437 (28%), Positives = 199/437 (45%), Gaps = 78/437 (17%)
Query: 39 LKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA 98
L+ ALQ M I+ +Q A E L RD + TGSGKT+++A P++ S
Sbjct: 18 LQEALQAMKINQPTAIQKACIPEI----LKGRDCIGGAKTGSGKTVAFAAPMLTKWSEDP 73
Query: 99 VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGI 158
+ +V+ PTR+LA+Q+ + F A+ ++ + V L VG SI D+ +L K+P
Sbjct: 74 -SGMFGVVLTPTRELAMQIAEQFTALGSSMNIRVALVVGGESIVDQAIQLQKKPHF---- 128
Query: 159 CYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT---LEHLCYLVVDETDRLLREAYQ 215
++ATPGRL HI ++ T L+ +LV+DE D LL + +
Sbjct: 129 -----------------IIATPGRLAHHIMSSGEDTIGGLKRAKFLVLDEADSLLTDTFA 171
Query: 216 AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSAT 275
+ L T + LPS KDK ++ +AT
Sbjct: 172 SDLATCIGA---------------LPS-----------------KDKRQ----TLLFTAT 195
Query: 276 LTQDPNKLAQLDLHH---PLFLTTGET--RYKLPERLESYKLICESKLKPLYLVALL--Q 328
+T L + PLF E+ + +P L++ ++ +K YL LL +
Sbjct: 196 ITDQVRALEDAPIQEGKPPLFTYQVESVDKVAIPSTLKTEYILVPEHVKEAYLYQLLTCE 255
Query: 329 SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 388
+ + I+F + + L L H L +++ Q R+ +L FR +V
Sbjct: 256 TYKDSSAIIFVNRTMTAEILRRTLYH---LEVRVASLHSQMPQQERTNSLHRFRANVARV 312
Query: 389 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR-- 446
L+++D +RG+D+ V V+NYD PA T+IHRAGRTARAG+ G + + + +V R
Sbjct: 313 LIATDVASRGLDIPTVELVINYDIPADPDTFIHRAGRTARAGRSGDAISFVTQRDVSRIE 372
Query: 447 -FKKLLQKADNDSCPIH 462
+K + K +S +H
Sbjct: 373 AIEKRINKKMTESDKVH 389
>gi|21228658|ref|NP_634580.1| ATP-dependent RNA helicase [Methanosarcina mazei Go1]
gi|20907159|gb|AAM32252.1| ATP-dependent RNA helicase [Methanosarcina mazei Go1]
Length = 429
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 118/422 (27%), Positives = 196/422 (46%), Gaps = 72/422 (17%)
Query: 40 KVALQNMGISSL----FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 95
K+ L N + S+ F A+ +++I L D+ + TGSGKTLS+A I+Q +
Sbjct: 33 KLGLSNAVLKSIDEHGFESPTAIQEKSIPLILAGEDVIGGAATGSGKTLSFASGILQ--N 90
Query: 96 NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLE 155
+ + ++AL++ PTR+LA QV + + L++ G I +I EL
Sbjct: 91 SEKGKGIQALILTPTRELAEQVANSLRKFSKYDPLNIASIYGGVGINTQIKEL------- 143
Query: 156 AGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 215
+++V TPGRL+DHI + L ++ LV+DE D + +
Sbjct: 144 ---------------KNAEVVVGTPGRLLDHI-SRNTIKLNNVKTLVLDEADHMFDMGF- 186
Query: 216 AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSAT 275
+ VE+ K+ P R ++ SAT
Sbjct: 187 ------------------------------------KVDVEKIIKECPQNRQT-LLFSAT 209
Query: 276 LTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKC 335
+T+D +L++ + +P+ ++T Y P++L + +K LV LLQ+
Sbjct: 210 ITKDIVRLSRKYMENPVRVST--ESYIDPQKLNQVVYKVQDDMKLSLLVYLLQNEKSNLG 267
Query: 336 IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 395
+VF ++ +T ++ L + I + GL Q+ R++ L+ F G I VLV +D
Sbjct: 268 MVFCNTKRNTDKVAKNLRKSSINAVAI--HGGLT-QNERTRILEKFHSGNIGVLVCTDVA 324
Query: 396 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 455
RG+D++GV++V NYD P K YIHR GRTARAG G+ +L K++ F +L+ D
Sbjct: 325 GRGLDIQGVSHVYNYDIPRESKQYIHRIGRTARAGTEGKAINILSKNDHANFMSVLKDND 384
Query: 456 ND 457
D
Sbjct: 385 VD 386
>gi|420334965|ref|ZP_14836583.1| ATP-dependent RNA helicase rhlE [Shigella flexneri K-315]
gi|391266947|gb|EIQ25888.1| ATP-dependent RNA helicase rhlE [Shigella flexneri K-315]
Length = 449
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 125/429 (29%), Positives = 195/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 3 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 58
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 59 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 103
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 104 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 154
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 155 RML--------------------------------DMGFIHDIRRV-----LTKLPAKRQ 177
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 178 -NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 235
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ I+
Sbjct: 236 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSSDIR 292
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 293 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 352
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 353 RDIEKLLKK 361
>gi|389841642|ref|YP_006343726.1| ATP-dependent RNA helicase RhlE [Cronobacter sakazakii ES15]
gi|387852118|gb|AFK00216.1| ATP-dependent RNA helicase RhlE [Cronobacter sakazakii ES15]
Length = 474
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 121/423 (28%), Positives = 194/423 (45%), Gaps = 77/423 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G + P+Q ++ I L +DL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPEILRAIAEQGYNEPTPIQ----RQAIPVVLSGKDLMASAQTGTGKTAGFTLPLLQRL 63
Query: 95 SN-----RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
+ + R +RAL++ PTR+LA QV G V + S +I L+
Sbjct: 64 TANQPHPKGRRPVRALILTPTRELAAQV---------------GENVREYSKYLDIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+L+ATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLIATPGRLLDLEHQNAVK---LDQVEVLVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR K P+
Sbjct: 160 RML--------------------------------DMGFIHDIRRVLA------KLPPKR 181
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+P + R E++ + + K K L L+
Sbjct: 182 QNLLFSATFSDDIKSLAEKLLHNPEEVEVAR-RNTASEQVTQHVHFVDKKRKRELLSYLI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I G + Q R++ L F+ G I+
Sbjct: 241 GDGNWQQVLVFTRTKHGANHLAEQLNKDG---ITAAAIHGNKSQGARTRALADFKTGGIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 447
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE K
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 448 KKL 450
+ +
Sbjct: 358 RDI 360
>gi|193069347|ref|ZP_03050302.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli E110019]
gi|432673792|ref|ZP_19909281.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE142]
gi|192957300|gb|EDV87748.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli E110019]
gi|431217166|gb|ELF14746.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE142]
Length = 454
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 125/429 (29%), Positives = 195/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 160 RML--------------------------------DMGFIHDIRRV-----LTKLPAKRQ 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLHNPLEIEVARCNTA-SDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|357127458|ref|XP_003565397.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 14-like
[Brachypodium distachyon]
Length = 655
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 118/424 (27%), Positives = 186/424 (43%), Gaps = 73/424 (17%)
Query: 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALP---I 90
C P + +Q G S+ P+Q W T L RD+ + TGSGKTL Y LP +
Sbjct: 161 CFPPEILREVQQAGFSAPSPIQAQSWPIT----LKGRDIVAVAKTGSGKTLGYLLPGFIL 216
Query: 91 VQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIK 150
V+ L N + LV+ PTR+LA Q++D + G+SS I
Sbjct: 217 VKNLRNNSRDGPTVLVLSPTRELATQIQDE------------AVKFGRSS-------RIS 257
Query: 151 RPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 210
L G P+ L++L+ DI+VATPGRL D I R +L + YLV+DE DR+L
Sbjct: 258 STCLYGGAPKGPQ--LRDLERGADIVVATPGRLND-ILEMRKVSLHQVAYLVLDEADRML 314
Query: 211 REAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270
++ + +++ + P+ +
Sbjct: 315 DMGFEPQIRKIVKQVQ--------------------------------------PKRQTL 336
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPER-LESYKLICESKLKPLYLVALLQS 329
+ +AT ++ K+A L +P+ + G T + + + Y + K L +L+S
Sbjct: 337 MFTATWPKEVRKIASDLLTNPVQVNIGNTDQLVANKSITQYVEVISPMEKQRRLDQILRS 396
Query: 330 LGE-EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 388
+ I+F ST R+C L+ + G + Q+ R L FR G+ +
Sbjct: 397 QEPGSRIIIFC----STKRMCDQLSRNLSRQYGASAIHGDKSQAERDSVLSEFRNGRCPI 452
Query: 389 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFK 448
LV++D RG+DV+ + VVNYD P ++ Y+HR GRT RAG G +T + K
Sbjct: 453 LVATDVAARGLDVKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGLAYTFFCDQDSKYAS 512
Query: 449 KLLQ 452
L++
Sbjct: 513 DLVK 516
>gi|392962181|ref|ZP_10327628.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans DSM
17108]
gi|421055965|ref|ZP_15518892.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans B4]
gi|421068803|ref|ZP_15530040.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans A12]
gi|421073056|ref|ZP_15534160.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans A11]
gi|392438381|gb|EIW16204.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans B4]
gi|392439079|gb|EIW16825.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans A12]
gi|392445483|gb|EIW22815.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans A11]
gi|392452939|gb|EIW29844.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans DSM
17108]
Length = 447
Score = 141 bits (356), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 115/381 (30%), Positives = 177/381 (46%), Gaps = 87/381 (22%)
Query: 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129
+D+ S TG+GKTL++ LPI++ + + ++AL++ PTR+LALQ+ A +A +G
Sbjct: 41 KDVVGQSQTGTGKTLAFILPILEKIEI-SKPIVQALIITPTRELALQITREVAKLADQLG 99
Query: 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV---LQELQSAVDILVATPGRLMDH 186
+ V L+V Y +DV +++L+ I++ TPGRLMDH
Sbjct: 100 IQV-LSV-----------------------YGGQDVDRQIKKLKGGAQIVIGTPGRLMDH 135
Query: 187 INATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFG 245
+ RG LE++ LV+DE D++L + +L V +L R + R +
Sbjct: 136 LR--RGTIQLENVTKLVLDEADQML---HMGFLEDVEELVRQTSNKRQT----------- 179
Query: 246 SLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL-------FLTTGE 298
M+ SAT+ LA + PL +T E
Sbjct: 180 ------------------------MLFSATMPSKIRGLADRYMRKPLDIRIQTKNITLDE 215
Query: 299 TRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGEL 358
+ + E ES K++ S + Y L IVF + + + L+ G
Sbjct: 216 IKQIMVEVPESEKIVKLSSMIDEYRPYL--------AIVFCHTKKRAIAVNMALSQKG-- 265
Query: 359 RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKT 418
+ E G Q R + +K FRE KIQ+LV++D RG+DVEGV ++ NYD P + +
Sbjct: 266 -YETDELHGELSQPKREQVMKRFREAKIQILVATDIAARGLDVEGVTHIFNYDIPHDVDS 324
Query: 419 YIHRAGRTARAGQLGRCFTLL 439
YIHR GRT RAGQ G TL+
Sbjct: 325 YIHRIGRTGRAGQAGMAITLI 345
>gi|359475106|ref|XP_003631587.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 21-like [Vitis
vinifera]
Length = 712
Score = 141 bits (356), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 121/427 (28%), Positives = 198/427 (46%), Gaps = 58/427 (13%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS------ 95
A++ G + P+Q+A I GL +RD+ + TGSGKT ++ LP++ +S
Sbjct: 306 AVERAGYKTPSPIQMAA----IPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPMS 361
Query: 96 -NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
A+V+ PTR+LA Q++D A +G+ V VG SI
Sbjct: 362 EENEAEGPYAVVMAPTRELAQQIEDETVKFAHYLGIKVVSIVGGQSIE------------ 409
Query: 155 EAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY 214
E G ++ ++++ATPGRL+D + R L Y+V+DE DR++ +
Sbjct: 410 EQGF---------RIRQGCEVVIATPGRLIDCLE-RRYAVLNQCNYVVLDEADRMIDMGF 459
Query: 215 QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274
+ + VL DA +PS+ ++ + +K R M SA
Sbjct: 460 EPQVVGVL------------DA---MPSS-----NLKPENEDEELDEKKIYRTTYM-FSA 498
Query: 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEK 334
T+ +LA+ L +P+ +T G T K + + + ++ + K L LL LG++
Sbjct: 499 TMPPAVERLARKYLRNPVVVTIG-TAGKATDLITQHVIMMKESEKMFKLQKLLDELGDKT 557
Query: 335 CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394
IVF ++ +S L L+ G ++ G + Q R +L+ FR + VLV++D
Sbjct: 558 AIVFINTKKSADNLAKGLDKAG---YRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDV 614
Query: 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 454
RG+D+ V +V+NYD P I+ Y HR GRT RAG+ G T L + F L Q
Sbjct: 615 AGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLHDSDVFYDLKQML 674
Query: 455 DNDSCPI 461
++ P+
Sbjct: 675 IQNNSPV 681
>gi|431805723|ref|YP_007232624.1| ATP-dependent RNA helicase [Liberibacter crescens BT-1]
gi|430799698|gb|AGA64369.1| ATP-dependent RNA helicase [Liberibacter crescens BT-1]
Length = 464
Score = 141 bits (356), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 113/372 (30%), Positives = 177/372 (47%), Gaps = 68/372 (18%)
Query: 76 SPTGSGKTLSYALPIVQTLSNRAVRCLR--ALVVLPTRDLALQVKDVFAAIAPAVGLSVG 133
+ TG+GKT S+ LP++ L R AL++ PTR+LA QV D F L+V
Sbjct: 45 AQTGTGKTASFVLPMLTILEESRARARMPLALILEPTRELAAQVADSFEKYGKNHKLNVA 104
Query: 134 LAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG- 192
L +G G+ ++ ++ ++L+ VD+L+ TPGR++DH RG
Sbjct: 105 LLIG-------------------GVSFEEQN--RKLERGVDVLICTPGRMLDHFE--RGK 141
Query: 193 FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRR 252
+ + LV+DE DR+L ++P + + R + R T L SA SL+ +
Sbjct: 142 LLMSGIKILVIDEADRMLD---MGFIPDIENIVRIISSTR----QTLLFSATMSLELQK- 193
Query: 253 CGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKL 312
+ + F P T+ +P+ A + H + + ESY+
Sbjct: 194 --ISKNFLRNP----------KTIEVNPSSSAAKTVKH----------WFVAAHSESYQ- 230
Query: 313 ICESKLKPLYLVALLQSLGEEK-CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQ 371
K + L L++S + K I+F + + L LNH G + G Q
Sbjct: 231 ------KRVVLRKLIRSQDDLKNAIIFCNQKKDVTSLFRSLNHHG---FSVCAIHGDMNQ 281
Query: 372 SVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ 431
+R K L F+EG IQ++V+SD RG+D+ V +V N+D P + + YIHR GRT RAG+
Sbjct: 282 RMRMKILDNFKEGTIQLMVASDIAARGLDIHDVGHVFNFDVPIHAEDYIHRIGRTGRAGR 341
Query: 432 LGRCFTLL-HKD 442
G+ FTL+ HKD
Sbjct: 342 HGKAFTLVTHKD 353
>gi|404497424|ref|YP_006721530.1| ATP-dependent RNA helicase RhlE [Geobacter metallireducens GS-15]
gi|418066827|ref|ZP_12704184.1| DEAD/DEAH box helicase domain protein [Geobacter metallireducens
RCH3]
gi|78195025|gb|ABB32792.1| ATP-dependent RNA helicase RhlE [Geobacter metallireducens GS-15]
gi|373559816|gb|EHP86098.1| DEAD/DEAH box helicase domain protein [Geobacter metallireducens
RCH3]
Length = 451
Score = 141 bits (356), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 120/421 (28%), Positives = 192/421 (45%), Gaps = 73/421 (17%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQT 93
L P++ + G ++ P+Q P + E RD+ + TG+GKT ++ALPI+
Sbjct: 8 LHPQVMAGVTAAGYTTPTPIQAQAI-----PTVMEGRDVMGLAQTGTGKTAAFALPILHR 62
Query: 94 LSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPK 153
L+ +RALV+ PTR+LA Q+ D F + +G+ + ++
Sbjct: 63 LAQGERGRVRALVIAPTRELAEQINDSF------------VTLGRQTRLRSVT------- 103
Query: 154 LEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA 213
+ G+ +P+ +Q+L++ +I+VA PGRL+DH+ A L HL LV+DE D++
Sbjct: 104 VYGGVNVNPQ--IQKLKAGAEIVVACPGRLLDHM-AQGTIDLSHLEVLVLDEADQMF--- 157
Query: 214 YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273
G L +RR K P P+ ++ S
Sbjct: 158 -----------------------------DMGFLPDLRRI-----LKQLP-PKRQTLLFS 182
Query: 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLI-CESKLKPLYLVALLQSLGE 332
AT+ D LAQ L P+ + G P ++ L E LK L+ LL+
Sbjct: 183 ATMPIDIRVLAQEILRDPVTVQVGTV---APAVTVTHALYPVEQHLKTPLLLELLRHTDT 239
Query: 333 EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS 392
E ++FT + RL + G K G Q+ R L FR+G Q+LV++
Sbjct: 240 ESVLIFTRTKHRAKRLGEQMEKAG---YKAASLQGNLSQNRRQAALDGFRDGTFQILVAT 296
Query: 393 DAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 452
D RG+DV V++V+NYD P + YIHR GRT RA + G FT++ ++ + + +
Sbjct: 297 DIAARGIDVSQVSHVINYDIPDTAEAYIHRIGRTGRAARSGDAFTMVTSEDTAMVRTIER 356
Query: 453 K 453
K
Sbjct: 357 K 357
>gi|421498965|ref|ZP_15946032.1| ATP-dependent RNA helicase SrmB [Aeromonas media WS]
gi|407182005|gb|EKE55995.1| ATP-dependent RNA helicase SrmB [Aeromonas media WS]
Length = 407
Score = 141 bits (356), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 126/451 (27%), Positives = 196/451 (43%), Gaps = 79/451 (17%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+P L AL MG F + Q + P L RD+ ++PTG+GKT ++ LP +Q L
Sbjct: 10 LNPALNRALAEMG----FTRPTTIQQMVLEPALDGRDILASAPTGTGKTAAFLLPAMQHL 65
Query: 95 SNRAVR----CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIK 150
+ R C R L++ PTR+LALQV A+A LS+ +G
Sbjct: 66 LDFPRRKPGPC-RMLILTPTRELALQVSAHARALAVHTHLSIETIIG------------- 111
Query: 151 RPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 210
G+ + E+ L L DI+VATPGRL+++I F + LV+DE DR+L
Sbjct: 112 ------GVSH--EEQLPALTKTTDIVVATPGRLLEYIEKEE-FESHDIEVLVLDEADRML 162
Query: 211 REAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270
G +K + R E ++ M
Sbjct: 163 --------------------------------DMGFIKDVNRIVEEARYRKH------TM 184
Query: 271 VLSATLT-QDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329
+ SATL K A L+ P+ L R + + L ++ K L+ +L+
Sbjct: 185 LFSATLEGAGLTKFANEILNDPVELHAEPPRSERRPITQWVHLADDAAHKLALLIHILKD 244
Query: 330 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 389
+K IVF V++ RL L + G QS R ++++ F EG++ L
Sbjct: 245 PQTQKAIVF---VKTRERLAELSGQLQAAGVSCAWIRGEMEQSKRVESIRKFHEGEVPFL 301
Query: 390 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKK 449
+++D RG+D+ V++V+NYD P Y+HR GRT RAG G +L+ ++ K
Sbjct: 302 IATDVAARGIDLPNVSHVINYDMPYGTDVYVHRIGRTGRAGNRGCAISLVEAHDMAMVAK 361
Query: 450 LLQKADNDSCPIHSIPSSLIESLRPVYKSVR 480
+ + + + +IE LRP +K R
Sbjct: 362 IERYTEE------RLKRRVIEELRPRHKEAR 386
>gi|398988803|ref|ZP_10692503.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM24]
gi|399013990|ref|ZP_10716288.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM16]
gi|398112166|gb|EJM02033.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM16]
gi|398148833|gb|EJM37498.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM24]
Length = 492
Score = 141 bits (356), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 136/481 (28%), Positives = 207/481 (43%), Gaps = 81/481 (16%)
Query: 6 KKSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGP 65
K PV+PW V E H L P L A+Q++G P+Q V +G
Sbjct: 80 KPKAPVIPWKLEDFVVEPQEGKTRFHDFNLSPELMHAIQDLGFPYCTPIQAQV----LGF 135
Query: 66 GLFERDLCINSPTGSGKTLSYALPIVQTL------SNRAVRCLRALVVLPTRDLALQVKD 119
L +D + TG+GKT ++ + I+ L R + RAL++ PTR+L +Q+
Sbjct: 136 TLAGKDAIGRAQTGTGKTAAFLISIITQLLQTPPPKERYMGEPRALIIAPTRELVVQIAK 195
Query: 120 VFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179
A + GL+V VG ++ LEA C DILVAT
Sbjct: 196 DAADLTKYTGLNVMTFVGGMDFDKQLKH------LEARHC--------------DILVAT 235
Query: 180 PGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTF 239
PGRL+D N L+ + +V+DE DR+L + +P V Q+ R
Sbjct: 236 PGRLLD-FNQRGDVHLDMVEVMVLDEADRMLDMGF---IPQVRQIIR------------- 278
Query: 240 LPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET 299
+ P ++ SAT T+D LA+ P + E
Sbjct: 279 --------------------QTPPKSERQTLLFSATFTEDVMNLAKQWTTDPSIVEI-EV 317
Query: 300 RYKLPERLES--YKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 357
E +E Y + K K LY L+ G E+ +VF + + R+ L G
Sbjct: 318 TNVASENVEQHIYAVAGADKYKLLY--NLVNDNGWERVMVFANRKDEVRRIEERLVRDG- 374
Query: 358 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417
+ + SG Q R KTL+ FREGKI+VLV++D RG+ ++G+++V+N+ P
Sbjct: 375 --VNAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEVPD 432
Query: 418 TYIHRAGRTARAGQLGRCFTLLHKDEVKRF----KKLLQKADNDSCPIHSIPSSLIESLR 473
Y+HR GRT RAG G + +D+ + +KL +K ++ P H + +E R
Sbjct: 433 DYVHRIGRTGRAGADGVSISFAGEDDSYQLPSIEEKLGRKISCETPPTHLL--RAVERKR 490
Query: 474 P 474
P
Sbjct: 491 P 491
>gi|375147728|ref|YP_005010169.1| DEAD/DEAH box helicase [Niastella koreensis GR20-10]
gi|361061774|gb|AEW00766.1| DEAD/DEAH box helicase domain protein [Niastella koreensis GR20-10]
Length = 563
Score = 141 bits (356), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 125/433 (28%), Positives = 198/433 (45%), Gaps = 76/433 (17%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQ 92
LD RL A +G + P+Q E P L +DL + TG+GKT ++ LP++
Sbjct: 9 LDERLIQATNALGYVNPTPIQ-----EQAIPVLLSGTKDLVGLAQTGTGKTAAFGLPLLH 63
Query: 93 TLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKR 151
L N ++ +ALVV PTR+L +Q+ + + G+ V G + I +I
Sbjct: 64 -LVNEQLKHPQALVVCPTRELCMQIVNEVEGFKKFIPGMFVAAVYGGAPIGQQI------ 116
Query: 152 PKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 211
+EL+ V I+VATPGRL+D I + LE + Y+++DE D +L
Sbjct: 117 ---------------RELRRGVQIVVATPGRLIDLIE-RKAIDLEQIQYVILDEADEMLN 160
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
+Q + +L+ T E + ++T P IRR +R KD P V V
Sbjct: 161 MGFQDDIEFILKNT-PKREATWLFSATMPPE-------IRRVS-KRYMKD-PIEVTVGKV 210
Query: 272 LSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLG 331
SA NK ++ H +LT+ + RY+ +RL + +Y
Sbjct: 211 NSA------NK----NIDHQYYLTSAQHRYEALKRLIDFN-------PGIY--------- 244
Query: 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVS 391
I+FT + + L G I G Q R K + FRE +Q+L++
Sbjct: 245 ---GIIFTRTKADAQDIAEKLTREG---YDIDALHGDLTQQQRDKVMGDFREKTLQLLIA 298
Query: 392 SDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLL 451
+D RG+DV+G+ +V+NY+ P ++ Y HR+GRT RAG+ G C +++H V+ K+
Sbjct: 299 TDVAARGIDVQGITHVINYELPDDVEVYTHRSGRTGRAGKTGVCMSIVH---VRELGKMR 355
Query: 452 QKADNDSCPIHSI 464
Q P H +
Sbjct: 356 QIQTIVQAPFHKL 368
>gi|398915867|ref|ZP_10657527.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM49]
gi|398175918|gb|EJM63657.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM49]
Length = 496
Score = 141 bits (356), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 130/446 (29%), Positives = 194/446 (43%), Gaps = 75/446 (16%)
Query: 6 KKSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGP 65
K PV+PW V E H L P L A+Q++G P+Q V +G
Sbjct: 84 KPKAPVIPWKLEDFVVEPQEGKTRFHDFKLAPELMHAIQDLGFPYCTPIQAQV----LGF 139
Query: 66 GLFERDLCINSPTGSGKTLSYALPIVQTL------SNRAVRCLRALVVLPTRDLALQVKD 119
L +D + TG+GKT ++ + I+ L R + RAL++ PTR+L +Q+
Sbjct: 140 TLAGKDAIGRAQTGTGKTAAFLISIITQLLQTPPPKERYMGEPRALIIAPTRELVVQIAK 199
Query: 120 VFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179
A + GL+V VG ++ LEA C DILVAT
Sbjct: 200 DAADLTKYTGLNVMTFVGGMDFDKQLKH------LEARHC--------------DILVAT 239
Query: 180 PGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTF 239
PGRL+D N L+ + +V+DE DR+L + +P V Q+ R
Sbjct: 240 PGRLLD-FNQRGDVHLDMVEVMVLDEADRMLDMGF---IPQVRQIIR------------- 282
Query: 240 LPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET 299
+ P ++ SAT T+D LA+ P + E+
Sbjct: 283 --------------------QTPPKSERQTLLFSATFTEDVMNLAKQWTTDPSIVEI-ES 321
Query: 300 RYKLPERLES--YKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 357
+ E +E Y + K K LY L+ G E+ IVF + + R+ L G
Sbjct: 322 QNVASENVEQHIYAVAGADKYKLLY--NLVNDNGWERVIVFANRKDEVRRIEERLVRDG- 378
Query: 358 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417
I + SG Q R KTL+ FREGKI+VLV++D RG+ ++G+++V+N+ P
Sbjct: 379 --INAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEVPD 436
Query: 418 TYIHRAGRTARAGQLGRCFTLLHKDE 443
Y+HR GRT RAG G + +D+
Sbjct: 437 DYVHRIGRTGRAGADGVSISFAGEDD 462
>gi|46108158|ref|XP_381137.1| hypothetical protein FG00961.1 [Gibberella zeae PH-1]
Length = 906
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 108/330 (32%), Positives = 156/330 (47%), Gaps = 82/330 (24%)
Query: 13 PWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQ---ETIGPGLFE 69
PW+ P+ VS P L L P+ L+ G F VQ A T PG
Sbjct: 334 PWLAKPLRVSQDTRTPFSELDIL-PKACRVLEEKGFQDAFAVQTAAIPLLLPTSRPG--- 389
Query: 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129
D+C+++ TGSGKTL+Y LPI + +S + LRALVVLPTR+L Q ++ F A A
Sbjct: 390 -DVCVSAATGSGKTLAYTLPITRDISQGCLTRLRALVVLPTRELVKQAQETFELCARAFD 448
Query: 130 LS------VGLAVGQSSIADEISELIKRPKLEAGICYDPE-------------------- 163
S VG++VG S DE ++ +E + YDPE
Sbjct: 449 GSDRKRVRVGVSVGSQSFEDE-----QKAFMEQELRYDPEAYKKLQDEVQQQNQLKLGLS 503
Query: 164 --DVLQELQ-----------------SAVDILVATPGRLMDHINATRGFTLEHLCYLVVD 204
D L +L+ S +D+L+ TPGRL++H+ T GF+L+++ +LVVD
Sbjct: 504 TTDSLDDLEDTDPRLSSKNGYVVDLLSKIDVLICTPGRLVEHMEQTPGFSLDYVRWLVVD 563
Query: 205 ETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPY 264
E D+LL +++Q WL V++ R P+A R F D +
Sbjct: 564 EADKLLAQSFQGWLDVVMEKFRVSK-----------PTA-------------RDFPDINF 599
Query: 265 PRLVKMVLSATLTQDPNKLAQLDLHHPLFL 294
+ K++LSATLT+D + L QL LH P +
Sbjct: 600 SGVRKIILSATLTRDLSLLNQLGLHRPQMI 629
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 56/80 (70%), Gaps = 2/80 (2%)
Query: 373 VRSKTLKAFR--EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG 430
+R KTL+AF I++LV+SD ++RG+D+ +++V+NYD PA + Y+HR GRTARAG
Sbjct: 785 IRRKTLRAFSTPSSPIRLLVASDLVSRGIDLPNLDHVINYDMPASVAGYVHRVGRTARAG 844
Query: 431 QLGRCFTLLHKDEVKRFKKL 450
+ G +TL+ DE + K+
Sbjct: 845 KSGSAWTLVGDDESWFYNKI 864
>gi|149376365|ref|ZP_01894128.1| ATP-dependent RNA helicase RhlB [Marinobacter algicola DG893]
gi|149359379|gb|EDM47840.1| ATP-dependent RNA helicase RhlB [Marinobacter algicola DG893]
Length = 428
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 127/418 (30%), Positives = 193/418 (46%), Gaps = 76/418 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LD R+ A+ ++G P+Q ET+ L +DL + TG+GKT ++ + +Q++
Sbjct: 18 LDQRVLDAITDIGFEHCTPIQA----ETLPFTLACQDLIGQAQTGTGKTAAFLITAIQSM 73
Query: 95 -------SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISE 147
+R R L + PTR+LA+Q+ + G +V VG
Sbjct: 74 LETPIPKEDRFASEPRVLALAPTRELAMQIAKDAEQLCGYTGHNVVTVVG---------- 123
Query: 148 LIKRPKLEAGICYDPE-DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDET 206
G+ YD + D LQ VDILVATPGRL+D + + F L+ L L++DE
Sbjct: 124 ---------GMNYDKQRDQLQ--NEIVDILVATPGRLIDFLGSQDVF-LDQLDILILDEA 171
Query: 207 DRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPR 266
DR+L ++P V ++ IR+C P
Sbjct: 172 DRMLD---MGFIPDVKRI-------------------------IRKC--------TPKEE 195
Query: 267 LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL-ESYKLICESKLKPLYLVA 325
++ SAT QD LA + F+ E K ER+ ++ L+ E + P+ LV
Sbjct: 196 RQTLLFSATFNQDVLNLASMWTKSAEFVEI-EPEQKTAERVKQTVYLVGEDEKLPV-LVN 253
Query: 326 LLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 385
LQ EK IVF + + L L + G +K+ SG Q+ R KTL+ F+ G
Sbjct: 254 YLQRPEVEKAIVFANRRDQCRDLDEDLRNQG---VKVALMSGEIAQNKRLKTLEQFKNGS 310
Query: 386 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443
IQVLV++D RG+ V+GV +V NY+ P + Y+HR GRT RAG+ G + +D+
Sbjct: 311 IQVLVATDVAGRGIHVDGVTHVFNYNLPDNAEDYVHRIGRTGRAGKHGVSVSFASEDD 368
>gi|187733875|ref|YP_001881017.1| ATP-dependent RNA helicase RhlE [Shigella boydii CDC 3083-94]
gi|416268083|ref|ZP_11642051.1| ATP-dependent RNA helicase RhlE [Shigella dysenteriae CDC 74-1112]
gi|416304675|ref|ZP_11653972.1| ATP-dependent RNA helicase RhlE [Shigella flexneri CDC 796-83]
gi|417681065|ref|ZP_12330444.1| putative ATP-dependent RNA helicase rhlE [Shigella boydii 3594-74]
gi|420324512|ref|ZP_14826293.1| ATP-dependent RNA helicase rhlE [Shigella flexneri CCH060]
gi|420353560|ref|ZP_14854672.1| ATP-dependent RNA helicase rhlE [Shigella boydii 4444-74]
gi|420379143|ref|ZP_14878632.1| ATP-dependent RNA helicase rhlE [Shigella dysenteriae 225-75]
gi|421681481|ref|ZP_16121307.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Shigella flexneri 1485-80]
gi|187430867|gb|ACD10141.1| putative ATP-dependent RNA helicase RhlE [Shigella boydii CDC
3083-94]
gi|320175218|gb|EFW50327.1| ATP-dependent RNA helicase RhlE [Shigella dysenteriae CDC 74-1112]
gi|320183285|gb|EFW58140.1| ATP-dependent RNA helicase RhlE [Shigella flexneri CDC 796-83]
gi|332097530|gb|EGJ02510.1| putative ATP-dependent RNA helicase rhlE [Shigella boydii 3594-74]
gi|391256040|gb|EIQ15179.1| ATP-dependent RNA helicase rhlE [Shigella flexneri CCH060]
gi|391278315|gb|EIQ37027.1| ATP-dependent RNA helicase rhlE [Shigella boydii 4444-74]
gi|391305618|gb|EIQ63398.1| ATP-dependent RNA helicase rhlE [Shigella dysenteriae 225-75]
gi|404341432|gb|EJZ67838.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Shigella flexneri 1485-80]
Length = 454
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 124/429 (28%), Positives = 196/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR + K +
Sbjct: 160 RML--------------------------------DMGFIHDIRRVLTKLPAKRQ----- 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSSDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|423113365|ref|ZP_17101056.1| ATP-dependent RNA helicase rhlE [Klebsiella oxytoca 10-5245]
gi|376388734|gb|EHT01427.1| ATP-dependent RNA helicase rhlE [Klebsiella oxytoca 10-5245]
Length = 454
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 121/407 (29%), Positives = 188/407 (46%), Gaps = 76/407 (18%)
Query: 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-----SNRAVRCLRALVVLPTR 111
++ Q+ I L RDL ++ TG+GKT + LP++Q L + R +RAL++ PTR
Sbjct: 26 SIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQHLIQKEPHAKGRRPVRALILTPTR 85
Query: 112 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 171
+LA Q+ G V S + L+ + G+ +P+ + +L+S
Sbjct: 86 ELAAQI---------------GENVRDYSKYLNVRSLV----VFGGVSINPQ--MMKLRS 124
Query: 172 AVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDN 229
VDILVATPGRL+D H NA +L+ + LV+DE DR+L
Sbjct: 125 GVDILVATPGRLLDLEHQNAV---SLDKVEVLVLDEADRML------------------- 162
Query: 230 ENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH 289
G + IRR P R ++ SAT + D LA+ LH
Sbjct: 163 -------------DMGFIHDIRRV-----LAKLPAKRQ-NLLFSATFSDDIKSLAEKLLH 203
Query: 290 HPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLC 349
+PL + R E++ + K K L ++ ++ +VFT + + L
Sbjct: 204 NPLEIEVAR-RNTASEQVSQLVHFVDKKRKRELLSQMIGEGNWQQVLVFTRTKHGANHLA 262
Query: 350 TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN 409
LN G I+ G + Q R++ L F+ G I+VLV++D RG+D+E + +VVN
Sbjct: 263 EQLNKDG---IRSAAIHGNKSQGARTRALADFKSGGIRVLVATDIAARGLDIEELPHVVN 319
Query: 410 YDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK---RFKKLLQK 453
Y+ P + Y+HR GRT RA G +L+ DE K ++LL+K
Sbjct: 320 YELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLHDIERLLKK 366
>gi|311280327|ref|YP_003942558.1| DEAD/DEAH box helicase [Enterobacter cloacae SCF1]
gi|308749522|gb|ADO49274.1| DEAD/DEAH box helicase domain protein [Enterobacter cloacae SCF1]
Length = 446
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 125/429 (29%), Positives = 196/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+P + A+ G P+Q ++ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LNPEILRAVAEQGYREPTPIQ----KQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQRL 63
Query: 95 SN-----RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
+ R +RAL++ PTR+LA QV G V + S I L+
Sbjct: 64 VQNEPHAKGRRPIRALILTPTRELAAQV---------------GENVREYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VDILVATPGRL+D H NA L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDILVATPGRLLDLEHQNA---LKLDSVEVLVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 160 RML--------------------------------DMGFIHDIRRV-----LAKLPAKRQ 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ L +PL + R E++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLRNPLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GEGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ ++LL+K
Sbjct: 358 RDIERLLKK 366
>gi|336386445|gb|EGO27591.1| hypothetical protein SERLADRAFT_360268 [Serpula lacrymans var.
lacrymans S7.9]
Length = 520
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 131/438 (29%), Positives = 198/438 (45%), Gaps = 54/438 (12%)
Query: 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSP 77
P +L + D L P L AL M I + +QVA I P L RD N+
Sbjct: 69 PNTPTLHQSFSFDDLNISSPLL-AALSRMSIRTPTEIQVAC----IPPLLSGRDCIGNAK 123
Query: 78 TGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVG 137
TGSGKT+++ALPI+Q LS ALV+ PTR+LA Q+ D FA + + + + VG
Sbjct: 124 TGSGKTIAFALPILQKLSEDPYGIF-ALVLTPTRELAFQISDQFAVLGAGLSIRTAVIVG 182
Query: 138 QSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLE 196
+ + EL RP ++VATPGR++DH+ ++ G ++L
Sbjct: 183 GMDMMTQALELDNRPH---------------------VVVATPGRIVDHLRSSSGEWSLS 221
Query: 197 HLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVE 256
+ +LV+DE DRLL + L + + + + A T PS + R G +
Sbjct: 222 RIKFLVLDEADRLLTPTFSPELSYLFDVLPKERQTCLFTA-TLTPSIDKLAEVPPRPGKQ 280
Query: 257 RGFKDKPYPRLVKMVLSATLTQD----PNKLAQLDLHHPLFLTTGETRYKLPERLESYKL 312
+ F + + +V TL Q+ P+ + + L+H L PE S +
Sbjct: 281 KPFIHRMNANIETVV---TLNQNFVLVPSHVRETYLYHLL--------CNPPELAASLRR 329
Query: 313 ICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQS 372
I K L+Q I+F + + L +LL L I+ Q
Sbjct: 330 IPPDTEK----RELVQP---PPTIIFCTKPRTAAYLTSLLK---TLSIRSTALHSRLTQR 379
Query: 373 VRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL 432
R +L FR I VLVS+D RG+D+E V V+N+D P + Y HR GRTARAG+
Sbjct: 380 ERLTSLSLFRSSVIPVLVSTDVGARGLDIEDVAMVINWDLPNEPEEYTHRVGRTARAGKA 439
Query: 433 GRCFTLLHKDEVKRFKKL 450
G + + + + +R K+
Sbjct: 440 GIAISFVTEKDEERVLKI 457
>gi|440790460|gb|ELR11743.1| helicase conserved Cterminal domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 249
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 68/147 (46%), Positives = 101/147 (68%), Gaps = 2/147 (1%)
Query: 312 LICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQ 371
+IC KPL L+ LL+ ++ + FTSSVESTHRL LL G+ + EYS Q
Sbjct: 2 VICSLAYKPLVLLYLLEMFDFKRTLCFTSSVESTHRLYLLLTLMGQ--TGVAEYSSTLPQ 59
Query: 372 SVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ 431
R++ ++ F +G I+++++SDAM+RG+D+E V NV+NYD P +IKTY+HR GRTARAG+
Sbjct: 60 RKRTQIIEKFAKGDIKIVIASDAMSRGLDIEDVENVINYDVPPFIKTYVHRVGRTARAGR 119
Query: 432 LGRCFTLLHKDEVKRFKKLLQKADNDS 458
G+ +TLL K E F+ +L+KA++ +
Sbjct: 120 QGKTYTLLLKSEAHHFRSMLKKAEHST 146
>gi|117620545|ref|YP_858124.1| ATP-dependent RNA helicase SrmB [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117561952|gb|ABK38900.1| ATP-dependent RNA helicase SrmB [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 407
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 126/450 (28%), Positives = 195/450 (43%), Gaps = 77/450 (17%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+P L AL MG S +Q Q + P L RD+ ++PTG+GKT ++ LP +Q L
Sbjct: 10 LNPALNRALAEMGFSRPTTIQ----QMVLEPALDGRDILASAPTGTGKTAAFLLPALQHL 65
Query: 95 SN---RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
+ R R LV+ PTR+LALQV A+A LS+ +G
Sbjct: 66 LDFPRRKPGPCRMLVLTPTRELALQVTAHAKALAAHTNLSIETIIG-------------- 111
Query: 152 PKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 211
G+ + E+ L L DI+VATPGRL+++I F + LV+DE DR+L
Sbjct: 112 -----GVSH--EEQLPALTKTTDIVVATPGRLLEYIEKEE-FESHDIEVLVLDEADRMLD 163
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
G +K + R E ++ M+
Sbjct: 164 --------------------------------MGFIKDVNRIVEEARYRKH------TML 185
Query: 272 LSATLT-QDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL 330
SATL K A L P+ L R + + L ++ K LV +L+
Sbjct: 186 FSATLEGAGLEKFANDILKEPVELHAEPPRSERRPITQWVHLADDAAHKLALLVHILKDP 245
Query: 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 390
+K I+F V++ RL L + G QS R ++++ F EG++ L+
Sbjct: 246 ETQKAIIF---VKTRERLAELSGQLQAAGVSCAWIRGEMEQSKRIESIRKFHEGEVPFLI 302
Query: 391 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
++D RG+D+ V++V+NYD P Y+HR GRT RAG G +L+ ++ K+
Sbjct: 303 ATDVAARGIDLPNVSHVINYDMPYGADVYVHRIGRTGRAGNRGCAISLVEAHDMAMVAKI 362
Query: 451 LQKADNDSCPIHSIPSSLIESLRPVYKSVR 480
+ + + +I+ LRP +K R
Sbjct: 363 ERYTEE------RLKRRVIDELRPKHKEAR 386
>gi|237805399|ref|ZP_04592103.1| ATP-dependent RNA helicase RhlB, partial [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|331026506|gb|EGI06561.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. oryzae
str. 1_6]
Length = 355
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 121/408 (29%), Positives = 188/408 (46%), Gaps = 74/408 (18%)
Query: 65 PGLFERDLCINSPTGSGKTLSYALPIVQTLSNR----AVRCLRALVVLPTRDLALQVKDV 120
P L RDL + TG+GKT +ALP++Q L+ A +RALV+ PTR+LA QV +
Sbjct: 2 PVLAGRDLMAAAQTGTGKTAGFALPLLQRLTMEGPKVAPNSIRALVLAPTRELADQVHES 61
Query: 121 FAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180
A + LS A G G+ +P+ + +L+ VD+LVATP
Sbjct: 62 IRQYAEHLPLSTYAAYG-------------------GVSINPQ--MMKLRKGVDVLVATP 100
Query: 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFL 240
GRL+D ++ + L L++DE DR+L ++P V Q+ R
Sbjct: 101 GRLLD-LHRQKAVKFSQLQTLILDEADRMLD---MGFIPQVRQIIRQTPHK--------- 147
Query: 241 PSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR 300
G +T ++ SAT T+D LA+ P + E+
Sbjct: 148 ----GERQT--------------------LLFSATFTEDVMNLAKQWTTEPSIVEI-ESL 182
Query: 301 YKLPERLES--YKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGEL 358
+ +E Y + K K LY L+ G E+ +VF + + R+ L G
Sbjct: 183 NVASDNVEQHIYAVAGADKYKLLY--NLVTDNGWERVMVFANRKDEVRRIEERLVRDG-- 238
Query: 359 RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKT 418
+ + SG Q R KTL+ FREGKI+VLV++D RG+ ++G+++V+N+ P
Sbjct: 239 -VNAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEVPDD 297
Query: 419 YIHRAGRTARAGQLGRCFTLLHKDEVKRF----KKLLQKADNDSCPIH 462
Y+HR GRT RAG G + +D+ + +KL +K ++ P H
Sbjct: 298 YVHRIGRTGRAGADGVSISFAGEDDSYQLPAIEEKLGRKISCETPPTH 345
>gi|417700880|ref|ZP_12350014.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-218]
gi|333007150|gb|EGK26642.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-218]
Length = 406
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 125/429 (29%), Positives = 196/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 160 RML--------------------------------DMGFIHDIRRV-----LTKLPAKRQ 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSVAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVN++ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNHELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|300088260|ref|YP_003758782.1| DEAD/DEAH box helicase [Dehalogenimonas lykanthroporepellens
BL-DC-9]
gi|299527993|gb|ADJ26461.1| DEAD/DEAH box helicase domain protein [Dehalogenimonas
lykanthroporepellens BL-DC-9]
Length = 429
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 121/424 (28%), Positives = 188/424 (44%), Gaps = 76/424 (17%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P ++ +++ G + P+Q + I P L RDL + TG+GKT ++ LP++Q L
Sbjct: 8 LHPAVRDGVKSAGYTEPTPIQA----QAIPPALQGRDLIGLAQTGTGKTTAFVLPMLQRL 63
Query: 95 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
LR L+V PTR+LA Q+ D ++ GL G
Sbjct: 64 LRGPRGKLRGLIVSPTRELAEQIYDSVKTLSQHTGLRAMAIYG----------------- 106
Query: 155 EAGICYDPEDVLQELQSAVDILVATPGRLMDHI-NATRGFTLEHLCYLVVDETDRLLREA 213
G+ +P+ +L++ DI++A PGRL+DH+ T F + + LV+DE DR+
Sbjct: 107 --GVGMEPQKA--KLRAGTDIVIACPGRLLDHVWQGTIDF--DDVEMLVIDEADRMFDMG 160
Query: 214 YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273
FLP ++ I RC V P ++ S
Sbjct: 161 -------------------------FLPD----IRKILRCLVR--------PERQTLLFS 183
Query: 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLI-CESKLKPLYLVALLQSLGE 332
AT+ D KL Q L P+ + G P ++ L LK L +L+ + +
Sbjct: 184 ATMPADVRKLVQEFLTDPVTVQIGTV---APAVTVTHALYPVRQDLKTALLKQILRQIED 240
Query: 333 EKCI-VFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVS 391
+ VFT + T R+ L G + G Q R L F++G +VLV+
Sbjct: 241 AGSVLVFTRTKHRTERVAIALRQAG---YAVASIQGNLSQYRRQAALDGFKDGTFKVLVA 297
Query: 392 SDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFK 448
+D +RG+DV V++V+NYD P YIHR GRT R G+ G FT + ++ V+ +
Sbjct: 298 TDIASRGIDVSDVSHVINYDMPDTADAYIHRIGRTGRIGRSGDAFTFVTPEDESMVRALE 357
Query: 449 KLLQ 452
KLL+
Sbjct: 358 KLLK 361
>gi|167533855|ref|XP_001748606.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163772847|gb|EDQ86493.1| predicted protein [Monosiga brevicollis MX1]
Length = 698
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 119/441 (26%), Positives = 198/441 (44%), Gaps = 63/441 (14%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIV--- 91
L+P + A+Q +G + P+Q A I GL RD+ + TGSGKTL++ LP++
Sbjct: 280 LNPEMLKAIQKLGFENPTPIQRAA----IPIGLNNRDIIGVAETGSGKTLAFVLPLLNWI 335
Query: 92 ---------QTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIA 142
Q + N A+++ PTRDLA Q++D A +G+ + +G S
Sbjct: 336 ISLPQLVREQDIDNGPY----AVILAPTRDLAQQIEDEANKFARPLGVRLVSVIGGHS-- 389
Query: 143 DEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLV 202
ED +L ++++ATPGRL+D ++ L Y+V
Sbjct: 390 -------------------REDQSFKLNQGCEVVIATPGRLIDVLD-NHYMVLNQCSYIV 429
Query: 203 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDK 262
+DE DR+L ++ + +L+ N +D + + E
Sbjct: 430 MDEADRMLDMGFEPEVQRILEYIPVSNMKPDTDEAE-----------DQHLLAENSRNKA 478
Query: 263 PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLY 322
Y + V + +AT+ +LA+ L P + G + +R+E L+ K K
Sbjct: 479 KYRQTV--LFTATMPTSVERLARTYLRRPATVNIG-VAGRAADRVEQRVLMLSEKQKRNE 535
Query: 323 LVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR 382
LV LL S+ E I+F + + L L G + G + Q +R + L +
Sbjct: 536 LVKLLDSM-EPPVIIFVNQKKGADVLTKSLEKMG---YRASALHGGKSQDLRERALSQLK 591
Query: 383 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD 442
+ +LV++D RG+D++G++ V+NYD I+ Y HR GRT RAG G T L ++
Sbjct: 592 DKTKDILVATDVAGRGIDIKGISMVINYDMAKNIEDYTHRIGRTGRAGSSGVAVTFLTEE 651
Query: 443 EVKRF---KKLLQKADNDSCP 460
+ K F K++L+ + N CP
Sbjct: 652 DSKVFWDLKEMLKSSKNSVCP 672
>gi|443293943|ref|ZP_21033037.1| Putative ATP-dependent RNA helicase [Micromonospora lupini str.
Lupac 08]
gi|385883801|emb|CCH21188.1| Putative ATP-dependent RNA helicase [Micromonospora lupini str.
Lupac 08]
Length = 437
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 132/460 (28%), Positives = 201/460 (43%), Gaps = 92/460 (20%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P L AL GI FP+Q A ++ L RD+ TGSGKTL++ LP++
Sbjct: 13 LAPALLSALTAQGIIEPFPIQSATLPDS----LAGRDVLGRGRTGSGKTLAFGLPLLSRT 68
Query: 95 SNRAVRCLR--ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
+ R R R ALV++PTR+LA QV A A AVGL VG S+ + L
Sbjct: 69 AGRKARPGRPLALVLVPTRELAQQVTTALAPYARAVGLRCATVVGGLSLQRQADAL---- 124
Query: 153 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLR 211
++ +++VATPGRL D IN RG L+ + V+DE D++
Sbjct: 125 -----------------RAGAEVVVATPGRLNDLIN--RGDARLDQVEITVLDEADQM-- 163
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
A +LP V +L ++ P+ +M+
Sbjct: 164 -ADMGFLPQVTKLL-----------------------------------EQVAPQGQRML 187
Query: 272 LSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLG 331
SATL ++L + L P+ + + + + L ++ KP L +
Sbjct: 188 FSATLDGGVDRLVRRFLSSPVTHSVDPGTATVTA-MTHHVLHVDALDKPDALTRIAAR-- 244
Query: 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVS 391
E + I+F + RL L G ++ G + Q R++ L+ FR G++ LV+
Sbjct: 245 EGRTILFMGTKHRADRLARQLLSKG---VRAAALHGGKSQPQRTRILEQFRNGQVTALVA 301
Query: 392 SDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLL 451
+D RG+ V+G++ VVN D P K Y+HR GRTARAG+ G TL+ ++ + +L+
Sbjct: 302 TDVAARGIHVDGLDMVVNVDPPTEAKDYLHRGGRTARAGESGSVVTLVLPEQRRDVSRLM 361
Query: 452 QKADNDSCPIHSIPSSLIESLRPVYKSVRGGISDEAFWKV 491
A +RP VR G DEA +V
Sbjct: 362 ATA----------------GIRPQSVQVRPG--DEALARV 383
>gi|152013506|sp|Q6BJX6.2|DHH1_DEBHA RecName: Full=ATP-dependent RNA helicase DHH1
Length = 516
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 127/449 (28%), Positives = 197/449 (43%), Gaps = 79/449 (17%)
Query: 24 FEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKT 83
FED PL L + + G PVQ +E+I L RD+ + G+GKT
Sbjct: 32 FEDFPLKR------ELLMGIFEAGFEKPSPVQ----EESIPMALAGRDILARAKNGTGKT 81
Query: 84 LSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIAD 143
S+ +P +Q + V ++AL+++PTR+LALQ V + +GL + G +S+ D
Sbjct: 82 ASFVIPCLQQARPK-VNKIQALILVPTRELALQTSQVVRTLGKHLGLQCMVTTGGTSLRD 140
Query: 144 EISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVV 203
+I L DP V +LV TPGR++D + + + L V+
Sbjct: 141 DILRL-----------NDP----------VHVLVGTPGRVLD-LASRKVADLSECPLFVM 178
Query: 204 DETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKP 263
DE D++L ++ + +L F P+ SL
Sbjct: 179 DEADKMLSREFKGIIEQIL---------------AFFPTTRQSL-----------LFSAT 212
Query: 264 YPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYL 323
+P VK + LT K +++L L L Y E E KL C L
Sbjct: 213 FPLAVKSFMDQHLT----KPYEINLMDELTLRGISQFYAFVE--EKQKLHC--------L 258
Query: 324 VALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 383
L L + I+F + ST+R+ L EL Q R+K FR+
Sbjct: 259 NTLFSKLQINQAIIFCN---STNRVELLAKKITELGYSCYYSHAKMPQHARNKVFHEFRQ 315
Query: 384 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443
GK++VLV SD +TRG+D++ VN V+N+D P +TY+HR GR+ R G LG L+ ++
Sbjct: 316 GKVRVLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLMSWND 375
Query: 444 VKRFKKLLQKADNDSCPIHSIPSSLIESL 472
K+ Q+ + I IP+++ +SL
Sbjct: 376 RYNLYKIEQELGTE---IKPIPATIDKSL 401
>gi|387813947|ref|YP_005429430.1| ATP-dependent RNA helicase [Marinobacter hydrocarbonoclasticus ATCC
49840]
gi|381338960|emb|CCG95007.1| ATP-dependent RNA helicase [Marinobacter hydrocarbonoclasticus ATCC
49840]
Length = 423
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 125/407 (30%), Positives = 184/407 (45%), Gaps = 74/407 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LD RL A+ +G P+Q ET+ L DL + TG+GKT ++ + +Q+L
Sbjct: 18 LDKRLLDAISKIGFEYCTPIQA----ETLPWTLACEDLIGQAQTGTGKTAAFLITAIQSL 73
Query: 95 -------SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISE 147
R R L + PTR+LA+Q+ + G +V VG
Sbjct: 74 LETPIDEKERFASEPRVLALAPTRELAMQIAKDAEQLCHYTGHNVVTVVG---------- 123
Query: 148 LIKRPKLEAGICYDPEDVLQELQSA-VDILVATPGRLMDHINATRGFTLEHLCYLVVDET 206
G+ YD + ++LQ+ VDILVATPGRL+D + + F L+ L L++DE
Sbjct: 124 ---------GMNYDKQ--REQLQNEIVDILVATPGRLIDFLGSQDVF-LDQLDILILDEA 171
Query: 207 DRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPR 266
DR+L ++P V ++ IR+C P
Sbjct: 172 DRMLD---MGFIPDVKRI-------------------------IRKC--------TPKDE 195
Query: 267 LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVAL 326
++ SAT QD LA + + F+ E K ER+E + K LV
Sbjct: 196 RQTLLFSATFNQDVLNLASMWTRNAEFVEI-EPEQKTAERVEQTVFLVSDNEKLPVLVNY 254
Query: 327 LQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 386
L+ EK IVF + + L L + G +K+ SG Q+ R KTL F++G+I
Sbjct: 255 LKRPEVEKAIVFANRRDQCRDLEEDLKNQG---VKVALMSGEIAQNKRLKTLDQFKKGQI 311
Query: 387 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 433
QVLV++D RG+ V GV +V NY+ P + Y+HR GRT RAG+ G
Sbjct: 312 QVLVATDVAGRGIHVNGVTHVFNYNLPDNAEDYVHRIGRTGRAGKTG 358
>gi|120554694|ref|YP_959045.1| DEAD/DEAH box helicase [Marinobacter aquaeolei VT8]
gi|120324543|gb|ABM18858.1| DEAD/DEAH box helicase domain protein [Marinobacter aquaeolei VT8]
Length = 423
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 125/407 (30%), Positives = 184/407 (45%), Gaps = 74/407 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LD RL A+ +G P+Q ET+ L DL + TG+GKT ++ + +Q+L
Sbjct: 18 LDKRLLDAISKIGFEYCTPIQA----ETLPWTLACEDLIGQAQTGTGKTAAFLITAIQSL 73
Query: 95 -------SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISE 147
R R L + PTR+LA+Q+ + G +V VG
Sbjct: 74 LETPIDEKERFASEPRVLALAPTRELAMQIAKDAEQLCHYTGHNVVTVVG---------- 123
Query: 148 LIKRPKLEAGICYDPEDVLQELQSA-VDILVATPGRLMDHINATRGFTLEHLCYLVVDET 206
G+ YD + ++LQ+ VDILVATPGRL+D + + F L+ L L++DE
Sbjct: 124 ---------GMNYDKQ--REQLQNEIVDILVATPGRLIDFLGSQDVF-LDQLDILILDEA 171
Query: 207 DRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPR 266
DR+L ++P V ++ IR+C P
Sbjct: 172 DRMLD---MGFIPDVKRI-------------------------IRKC--------TPKDE 195
Query: 267 LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVAL 326
++ SAT QD LA + + F+ E K ER+E + K LV
Sbjct: 196 RQTLLFSATFNQDVLNLASMWTRNAEFVEI-EPEQKTAERVEQTVFLVSDNEKLPVLVNY 254
Query: 327 LQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 386
L+ EK IVF + + L L + G +K+ SG Q+ R KTL F++G+I
Sbjct: 255 LKRPEVEKAIVFANRRDQCRDLEEDLKNQG---VKVALMSGEIAQNKRLKTLDQFKKGQI 311
Query: 387 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 433
QVLV++D RG+ V GV +V NY+ P + Y+HR GRT RAG+ G
Sbjct: 312 QVLVATDVAGRGIHVNGVTHVFNYNLPDNAEDYVHRIGRTGRAGKTG 358
>gi|294660132|ref|XP_462573.2| DEHA2G23782p [Debaryomyces hansenii CBS767]
gi|218512022|sp|Q6BGU8.2|DBP8_DEBHA RecName: Full=ATP-dependent RNA helicase DBP8
gi|199434486|emb|CAG91086.2| DEHA2G23782p [Debaryomyces hansenii CBS767]
Length = 441
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 120/417 (28%), Positives = 192/417 (46%), Gaps = 71/417 (17%)
Query: 39 LKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCIN-SPTGSGKTLSYALPIVQTLSNR 97
L AL +M I + +Q A P + + CI + TGSGKT+++A P++ S
Sbjct: 12 LSEALNSMKIHTPTTIQSACI-----PKILKGHDCIGGAKTGSGKTIAFAAPMLTQWSED 66
Query: 98 AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAG 157
+ LV+ PTR+LALQ+ + FAA+ ++ + V + VG I + EL +RP
Sbjct: 67 P-SGIYGLVLTPTRELALQIAEQFAALGSSMNIKVSVIVGGEDIVKQALELQRRPHF--- 122
Query: 158 ICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT---LEHLCYLVVDETDRLLREAY 214
+VATPGRL DHI + T L + YL++DE DRLL ++
Sbjct: 123 ------------------VVATPGRLADHILNSGEDTVCGLRRVKYLILDEADRLLSNSF 164
Query: 215 QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274
L + S ++ + T L +A T+ R KD+P P+
Sbjct: 165 GGDLERCFNILPSTDKRQ-----TLLFTA-----TV--TDAVRALKDRPVPK-------- 204
Query: 275 TLTQDPNKLAQLDLHHPLFLTTGET--RYKLPERLESYKLICESKLKPLYLVALLQ--SL 330
KL P+F+ ET + +P L + S +K YL ++L
Sbjct: 205 ------GKL-------PVFIHEVETVDKVAIPSTLSVKYVFVPSYVKEAYLHSILNLPQY 251
Query: 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 390
+ I+FT+ + L L +L ++ Q+ R+ +L F+ G ++L+
Sbjct: 252 SDSLSIIFTNRTATAELLRRTLR---KLEFRVASLHSEMPQTERTNSLHRFKAGAAKILI 308
Query: 391 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 447
++D +RG+D+ V VVNYD PA +IHR GRTARAG+ G +++ + +V R
Sbjct: 309 ATDVASRGLDIPTVELVVNYDIPADADDFIHRVGRTARAGRKGDAISIVAEKDVDRI 365
>gi|398937670|ref|ZP_10667379.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM41(2012)]
gi|398166787|gb|EJM54878.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM41(2012)]
Length = 495
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 128/446 (28%), Positives = 194/446 (43%), Gaps = 75/446 (16%)
Query: 6 KKSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGP 65
K PV+PW V E H L P L A+Q++G P+Q V +G
Sbjct: 84 KPKAPVIPWKLEDFAVEPQEGKTRFHDFKLAPELMHAIQDLGFPYCTPIQAQV----LGF 139
Query: 66 GLFERDLCINSPTGSGKTLSYALPIVQTL------SNRAVRCLRALVVLPTRDLALQVKD 119
L +D + TG+GKT ++ + I+ L R + RAL++ PTR+L +Q+
Sbjct: 140 TLAGKDAIGRAQTGTGKTAAFLISIITQLLETPPPKERYMGEPRALIIAPTRELVVQIAK 199
Query: 120 VFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179
A + GL+V VG ++ LEA C DILVAT
Sbjct: 200 DAADLTKYTGLNVMTFVGGMDFDKQLKH------LEARHC--------------DILVAT 239
Query: 180 PGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTF 239
PGRL+D N L+ + +V+DE DR+L ++P V Q+ R
Sbjct: 240 PGRLLD-FNQRGDVHLDMVEVMVLDEADRMLD---MGFIPQVRQIIR------------- 282
Query: 240 LPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET 299
+ P ++ SAT T+D LA+ P + E+
Sbjct: 283 --------------------QTPPKNERQTLLFSATFTEDVMNLAKQWTTDPSIVEI-ES 321
Query: 300 RYKLPERLES--YKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 357
+ E +E Y + K K LY L+ G E+ +VF + + R+ L G
Sbjct: 322 QNVASENVEQHIYAVAGADKYKLLY--NLVNDNGWERVMVFANRKDEVRRIEERLVRDG- 378
Query: 358 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417
+ + SG Q R KTL+ FREGKI+VLV++D RG+ ++G+++V+N+ P
Sbjct: 379 --VNAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEVPD 436
Query: 418 TYIHRAGRTARAGQLGRCFTLLHKDE 443
Y+HR GRT RAG G + +D+
Sbjct: 437 DYVHRIGRTGRAGADGVSISFAGEDD 462
>gi|398851105|ref|ZP_10607796.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM80]
gi|398247294|gb|EJN32745.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM80]
Length = 492
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 136/481 (28%), Positives = 207/481 (43%), Gaps = 81/481 (16%)
Query: 6 KKSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGP 65
K PV+PW V E H L P L A+Q++G P+Q V +G
Sbjct: 80 KPKAPVIPWKLEDFVVEPQEGKTRFHDFKLSPELMHAIQDLGFPYCTPIQAQV----LGF 135
Query: 66 GLFERDLCINSPTGSGKTLSYALPIVQTL------SNRAVRCLRALVVLPTRDLALQVKD 119
L +D + TG+GKT ++ + I+ L R + RAL++ PTR+L +Q+
Sbjct: 136 TLAGKDAIGRAQTGTGKTAAFLISIITQLLQTPPPKERYMGEPRALIIAPTRELVVQIAK 195
Query: 120 VFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179
A + GL+V VG ++ LEA C DILVAT
Sbjct: 196 DAADLTKYTGLNVMTFVGGMDFDKQLKH------LEARHC--------------DILVAT 235
Query: 180 PGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTF 239
PGRL+D N L+ + +V+DE DR+L + +P V Q+ R
Sbjct: 236 PGRLLD-FNQRGDVHLDMVEVMVLDEADRMLDMGF---IPQVRQIIR------------- 278
Query: 240 LPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET 299
+ P ++ SAT T+D LA+ P + E
Sbjct: 279 --------------------QTPPKSERQTLLFSATFTEDVMNLAKQWTTDPSIVEI-EV 317
Query: 300 RYKLPERLES--YKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 357
E +E Y + K K LY L+ G E+ +VF + + R+ L G
Sbjct: 318 TNVASENVEQHIYAVAGADKYKLLY--NLVNDNGWERVMVFANRKDEVRRIEERLVRDG- 374
Query: 358 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417
+ + SG Q R KTL+ FREGKI+VLV++D RG+ ++G+++V+N+ P
Sbjct: 375 --VNAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEVPD 432
Query: 418 TYIHRAGRTARAGQLGRCFTLLHKDEVKRF----KKLLQKADNDSCPIHSIPSSLIESLR 473
Y+HR GRT RAG G + +D+ + +KL +K ++ P H + +E R
Sbjct: 433 DYVHRIGRTGRAGADGVSISFAGEDDSYQLPSIEEKLGRKISCETPPTHLL--RAVERKR 490
Query: 474 P 474
P
Sbjct: 491 P 491
>gi|390454552|ref|ZP_10240080.1| ATP-dependent RNA helicase dbpA [Paenibacillus peoriae KCTC 3763]
Length = 481
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 117/428 (27%), Positives = 192/428 (44%), Gaps = 83/428 (19%)
Query: 24 FEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKT 83
F D PL + AL ++G + VQ E I L ++DL + S TGSGKT
Sbjct: 6 FTDYPLSE------EIVRALNSLGYETPTKVQT----EVIPVALVKKDLVVKSQTGSGKT 55
Query: 84 LSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIAD 143
+Y +P+ + L + +AL++ PTR+LALQVK+ I + V G+
Sbjct: 56 AAYGIPLCE-LVDWNENKPQALILTPTRELALQVKEDITNIGRFKRIKVTSVYGKHPFHI 114
Query: 144 EISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLV 202
+ +EL +R I+V TPGR++DHI RG +LE + YLV
Sbjct: 115 QKAELKQR---------------------THIVVGTPGRVLDHIE--RGTLSLERMAYLV 151
Query: 203 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDK 262
+DE D +L + + +++Q SD
Sbjct: 152 IDEADEMLNMGFIEQVQSIIQALPSDR--------------------------------- 178
Query: 263 PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL---TTGETRYKLPERLESYKLICESKLK 319
V M+ SAT D +L++ + HP+ + TG T + L +++ KL
Sbjct: 179 -----VTMLFSATFPDDVAQLSRKYMDHPVNIEIKATGITTATIDHSL--IQVMETDKLL 231
Query: 320 PLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLK 379
L + ++++ + CI+F + E+ + L +L G Q R + +
Sbjct: 232 LLQNLLIVEN--PDSCIIFCRTQEN---VDILFRELADLDYPCDRIHGGMEQEERFEVMN 286
Query: 380 AFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439
AFR G+ + L+++D RG+D+ + +V+NYD P ++Y+HR GRT RAG+ G+ TL+
Sbjct: 287 AFRRGQFRYLIATDVAARGIDITNITHVINYDVPLEKESYVHRTGRTGRAGKTGKAITLV 346
Query: 440 HKDEVKRF 447
+ KR
Sbjct: 347 TPKDSKRL 354
>gi|421477647|ref|ZP_15925459.1| DEAD/DEAH box helicase, partial [Burkholderia multivorans CF2]
gi|400226180|gb|EJO56273.1| DEAD/DEAH box helicase, partial [Burkholderia multivorans CF2]
Length = 414
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 129/452 (28%), Positives = 196/452 (43%), Gaps = 81/452 (17%)
Query: 29 LDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL 88
+ L +P +K A+ +G +S P+Q +G G DL + TG+GKT + L
Sbjct: 3 FESLGLAEPLVK-AVNELGYTSPTPIQQQAIPAVLGGG----DLLAGAQTGTGKTAGFTL 57
Query: 89 PIVQTLSN------RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIA 142
PI+Q L A R +RAL++ PTR+LA QV++ A + + L + G SI
Sbjct: 58 PILQRLHTFYTEHRSAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSI- 116
Query: 143 DEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLV 202
P+++A L+ VDI+VATPGRL+DH+ + L L LV
Sbjct: 117 --------NPQIDA------------LKRGVDIVVATPGRLLDHMQ-QKTIDLSDLDILV 155
Query: 203 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDK 262
+DE DR+L G + I+R K
Sbjct: 156 LDEADRMLD--------------------------------MGFIHDIKRVLA------K 177
Query: 263 PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLY 322
PR ++ SAT + + LA L P + R E + + K
Sbjct: 178 LPPRRQNLLFSATFSDEIKALADSLLDSPALIEVAR-RNTTAETVAQKIHPVDRDRKREL 236
Query: 323 LVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR 382
L L++ + +VFT + +RL L G I G + QS R++ L F+
Sbjct: 237 LTHLIREHNWFQVLVFTRTKHGANRLAEQLTKDG---ISAMAIHGNKSQSARTRALAEFK 293
Query: 383 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD 442
+QVLV++D RG+D++ + +VVN+D P + Y+HR GRT RAG G +L+ D
Sbjct: 294 NNTLQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVD 353
Query: 443 EVKRFKKLLQKADNDSCPIHSIPSSLIESLRP 474
E K+LL+ D + IP +I P
Sbjct: 354 E----KQLLR--DIERLIKREIPREVIAGFEP 379
>gi|453074826|ref|ZP_21977616.1| ATP-dependent RNA helicase [Rhodococcus triatomae BKS 15-14]
gi|452763775|gb|EME22050.1| ATP-dependent RNA helicase [Rhodococcus triatomae BKS 15-14]
Length = 636
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 129/487 (26%), Positives = 214/487 (43%), Gaps = 90/487 (18%)
Query: 41 VALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR--- 97
L GI+ P+Q + I R++ + TGSGKTL++ LP++ L+ R
Sbjct: 42 AGLARDGITVPSPIQAMAIPDAI----AGRNVLGRAQTGSGKTLAFGLPMLARLAGRDDR 97
Query: 98 -AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 156
A + RALV++PTR+LA+QV D A VGL V AVG ++ +L +
Sbjct: 98 PAAKRPRALVLVPTRELAVQVVDSLLPYASTVGLKVRSAVGGMVFTKQVDQLAR------ 151
Query: 157 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 216
VDILVATPGRL DH+ L+ + + +DE D++ +
Sbjct: 152 ---------------GVDILVATPGRLGDHLRQET-CVLDEVEMIALDEADQMADMGFLP 195
Query: 217 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 276
+ ++++ TR D + +++ SATL
Sbjct: 196 EVRSIIEQTRPDGQ--------------------------------------RLLFSATL 217
Query: 277 TQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCI 336
++ L + L + T + R + +E Y L + K L + G + I
Sbjct: 218 DREVQSLVRRFLPDHVEHATADGRASVTT-MEHYVLNVDRGQKDAVLAEIGARSGG-RTI 275
Query: 337 VFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT 396
+F + + L G + + G + Q+ R++ L+ F+ G+ +LV++D
Sbjct: 276 MFARTKLGAEGITERLRDVG---VVAEALHGGKAQNQRTRVLERFKNGRTPILVATDVAA 332
Query: 397 RGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 456
RG+ V+G++ VV+ D PA K Y+HRAGRTARAG+ G +++ ++ + ++L A
Sbjct: 333 RGIHVDGIDLVVHVDPPADHKDYLHRAGRTARAGEKGTVVSIVLPNQRRMVRRLTDTAGV 392
Query: 457 DSCPIHSIPSS-----LIESLRPVYKSVRG--GISDEAFWKVGCDLHGVNRVRR-SFYQT 508
D+ ++ P S + + P + VR SD F +R RR YQ
Sbjct: 393 DAVEVNVRPGSEELTAITGARTPSGEPVRERRERSDRGFG---------DRPRREGGYQR 443
Query: 509 SGDRALG 515
GDR+ G
Sbjct: 444 GGDRSFG 450
>gi|444377668|ref|ZP_21176877.1| ATP-dependent RNA helicase SrmB [Enterovibrio sp. AK16]
gi|443678252|gb|ELT84924.1| ATP-dependent RNA helicase SrmB [Enterovibrio sp. AK16]
Length = 413
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 118/409 (28%), Positives = 191/409 (46%), Gaps = 70/409 (17%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LDP+L AL +M +Q V I G+ RD+ ++PTG+GKT ++ LP++Q L
Sbjct: 9 LDPQLLQALDDMSFERPTAIQAGV----IPHGMDGRDILASAPTGTGKTAAFVLPLLQHL 64
Query: 95 SN---RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
+ + RAL++ PTR+LA+QV D A+A L + G
Sbjct: 65 IDFPRQKPGPARALILTPTRELAIQVADQARALAKYTDLKIITITG-------------- 110
Query: 152 PKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 211
GI Y ++ + L DI+VATPGRLM++I A R F + LV+DE DR+L
Sbjct: 111 -----GISY--QEHAEILGKTQDIVVATPGRLMEYIEAER-FDCRAIESLVLDEADRMLD 162
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
+ P V +L+ E R+ S + T+ G+E GFK+
Sbjct: 163 MGFG---PAVDKLS---TECRWRKQSMLFSA------TLEGKGIE-GFKN---------- 199
Query: 272 LSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLG 331
TL DP ++ E + +++ + C+ L+ + +
Sbjct: 200 ---TLLTDPVEV------------EAEPPRRERKKITQWYYRCDDMAHKNALLKAILTEQ 244
Query: 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVS 391
E+ I+F V++ RL L + ++ G Q+ R+ ++ F G+I VL++
Sbjct: 245 AERAIIF---VKTRERLAALREFLTKEKVNCAWLQGEMAQAKRTYAIERFTTGEINVLLA 301
Query: 392 SDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 440
+D RG+DV +++V+N+D P Y+HR GRTARAG+ G +L+
Sbjct: 302 TDVAARGIDVPDIDHVINFDLPRKADVYLHRIGRTARAGKKGNAISLVE 350
>gi|418408565|ref|ZP_12981881.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens 5A]
gi|358005479|gb|EHJ97805.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens 5A]
Length = 504
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 121/417 (29%), Positives = 192/417 (46%), Gaps = 88/417 (21%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-NRA-V 99
A+ + G ++ P+Q I P L +RD+C + TG+GKT S+ LP++ L RA
Sbjct: 16 AIADAGYTTPTPIQAGA----IPPALEKRDICGIAQTGTGKTASFVLPMLTLLEKGRARA 71
Query: 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 159
R R L++ PTR+LA QV + F L+V L +G G+
Sbjct: 72 RMPRTLILEPTRELAAQVAENFEKYGKNHKLNVALLIG-------------------GVS 112
Query: 160 YDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWL 218
++ +D ++L+ D+L+ TPGRL+DH RG + + LV+DE DR+L
Sbjct: 113 FEDQD--RKLERGADVLICTPGRLLDHCE--RGKLLMTGVEILVIDEADRMLDMG----- 163
Query: 219 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ 278
F+P +ER K P+ R + SAT+
Sbjct: 164 --------------------FIPD------------IERIAKMIPFTRQT-LFFSATMPP 190
Query: 279 DPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE----SKLKPLYLVALLQSL--GE 332
+ KLA L +P TR ++ + + K + + S K A+L+ L E
Sbjct: 191 EIQKLADRFLQNP-------TRIEVAKPSSTAKTVTQRIVASHNKDYEKRAVLRDLVRAE 243
Query: 333 E----KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 388
E I+F + + L L+ G + G Q R+ L+ FR+G++ +
Sbjct: 244 EAELKNAIIFCNRKKDVADLFRSLDRHG---FSVGALHGDMDQRSRTTMLQNFRDGQLTL 300
Query: 389 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 445
LV+SD RG+D+ V++V N+D P + + Y+HR GRT RAG+ G+ FTL+ K + K
Sbjct: 301 LVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTLVTKSDAK 357
>gi|221211314|ref|ZP_03584293.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
CGD1]
gi|221168675|gb|EEE01143.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
CGD1]
Length = 480
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 127/452 (28%), Positives = 195/452 (43%), Gaps = 81/452 (17%)
Query: 29 LDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL 88
+ L +P +K A+ +G +S P+Q +G G DL + TG+GKT + L
Sbjct: 3 FESLGLAEPLVK-AVNELGYTSPTPIQQQAIPAVLGGG----DLLAGAQTGTGKTAGFTL 57
Query: 89 PIVQTLSN------RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIA 142
PI+Q L A R +RAL++ PTR+LA QV++ A + + L + G
Sbjct: 58 PILQRLHTFYTEHRSAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFG----- 112
Query: 143 DEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLV 202
G+ +P+ + L+ VDI+VATPGRL+DH+ + L L LV
Sbjct: 113 --------------GVSINPQ--IDALKRGVDIVVATPGRLLDHMQ-QKTIDLSDLDILV 155
Query: 203 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDK 262
+DE DR+L G + I+R K
Sbjct: 156 LDEADRML--------------------------------DMGFIHDIKRVLA------K 177
Query: 263 PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLY 322
PR ++ SAT + + LA L P + R E + + K
Sbjct: 178 LPPRRQNLLFSATFSDEIKALADSLLDSPALIEVAR-RNTTAETVAQKIHPVDRDRKREL 236
Query: 323 LVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR 382
L L++ + +VFT + +RL L G I G + QS R++ L F+
Sbjct: 237 LTHLIREHNWFQVLVFTRTKHGANRLAEQLTKDG---ISAMAIHGNKSQSARTRALAEFK 293
Query: 383 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD 442
+QVLV++D RG+D++ + +VVN+D P + Y+HR GRT RAG G +L+ D
Sbjct: 294 NNTLQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVD 353
Query: 443 EVKRFKKLLQKADNDSCPIHSIPSSLIESLRP 474
E K+LL+ D + IP +I P
Sbjct: 354 E----KQLLR--DIERLIKREIPREVIAGFEP 379
>gi|421472538|ref|ZP_15920727.1| DEAD/DEAH box helicase, partial [Burkholderia multivorans ATCC
BAA-247]
gi|400222909|gb|EJO53257.1| DEAD/DEAH box helicase, partial [Burkholderia multivorans ATCC
BAA-247]
Length = 407
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 129/452 (28%), Positives = 196/452 (43%), Gaps = 81/452 (17%)
Query: 29 LDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL 88
+ L +P +K A+ +G +S P+Q +G G DL + TG+GKT + L
Sbjct: 3 FESLGLAEPLVK-AVNELGYTSPTPIQQQAIPAVLGGG----DLLAGAQTGTGKTAGFTL 57
Query: 89 PIVQTLSN------RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIA 142
PI+Q L A R +RAL++ PTR+LA QV++ A + + L + G SI
Sbjct: 58 PILQRLHTFYTEHRSARRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSI- 116
Query: 143 DEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLV 202
P+++A L+ VDI+VATPGRL+DH+ + L L LV
Sbjct: 117 --------NPQIDA------------LKRGVDIVVATPGRLLDHMQ-QKTIDLSDLDILV 155
Query: 203 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDK 262
+DE DR+L G + I+R K
Sbjct: 156 LDEADRML--------------------------------DMGFIHDIKRVLA------K 177
Query: 263 PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLY 322
PR ++ SAT + + LA L P + R E + + K
Sbjct: 178 LPPRRQNLLFSATFSDEIKALADSLLDSPALIEVAR-RNTTAETVAQKIHPVDRDRKREL 236
Query: 323 LVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR 382
L L++ + +VFT + +RL L G I G + QS R++ L F+
Sbjct: 237 LTHLIREHNWFQVLVFTRTKHGANRLAEQLTKDG---ISAMAIHGNKSQSARTRALAEFK 293
Query: 383 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD 442
+QVLV++D RG+D++ + +VVN+D P + Y+HR GRT RAG G +L+ D
Sbjct: 294 NNTLQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVD 353
Query: 443 EVKRFKKLLQKADNDSCPIHSIPSSLIESLRP 474
E K+LL+ D + IP +I P
Sbjct: 354 E----KQLLR--DIERLIKREIPREVIAGFEP 379
>gi|255957139|ref|XP_002569322.1| Pc21g23550 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211591033|emb|CAP97252.1| Pc21g23550 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 819
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 112/329 (34%), Positives = 158/329 (48%), Gaps = 65/329 (19%)
Query: 8 SMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAV-----WQET 62
S+P PW+ +P+ S + L + P L L+ F VQ V E
Sbjct: 215 SLP--PWLANPLRKSAQDTKKFSEL-GIKPDLLKILEQQNYKEAFAVQSTVIPLLLQGEQ 271
Query: 63 IGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 122
PG DLC+++ TGSGKTLSY LP+V L R LR L+V+PTR+L Q ++
Sbjct: 272 NHPG----DLCVSAATGSGKTLSYVLPLVTALPPRPASRLRGLIVVPTRELVKQARESCE 327
Query: 123 AIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDP-------------------- 162
A L +G AVG +I DE L++ ++ Y+P
Sbjct: 328 LCASGSRLHIGSAVGNVAIKDEQKLLMRVDQV-----YNPAIQQQQRDGLKGNDWMNLSL 382
Query: 163 EDVLQEL--------------QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208
ED + E + VDIL+ TPGRL+DHI T+GFTL+HL +LV+DE DR
Sbjct: 383 EDCVNEAIDSSGSLPGHIQRSEPNVDILICTPGRLVDHIRYTKGFTLKHLEWLVIDEADR 442
Query: 209 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLV 268
LL E++Q W+ V+ ++ N TF P K + G+ KP PR
Sbjct: 443 LLNESFQEWVDVVM-----NSLNSREAPETFGPGG----KLLSELGL--SIDAKP-PR-- 488
Query: 269 KMVLSATLTQDPNKLAQLDLHHPLFLTTG 297
K++LSAT+T+D +KL L L +P + G
Sbjct: 489 KVILSATMTRDISKLNSLRLANPKMVIIG 517
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 74/123 (60%), Gaps = 1/123 (0%)
Query: 326 LLQSLGEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREG 384
L+ S + ++FT S ES RL L++ L ++ + S KTL A+R+G
Sbjct: 648 LVPSPSRKTVLIFTKSSESASRLARLISLLHPALAKRVGTIIKSNKSSASRKTLTAYRQG 707
Query: 385 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444
+I V+V++D +RG+D+E + +V+NYD P I TY+HR GRTARAG+ G ++L+ E
Sbjct: 708 RISVIVATDRASRGLDLESLTHVINYDIPTSITTYVHRVGRTARAGRAGSAWSLVAHREG 767
Query: 445 KRF 447
+ F
Sbjct: 768 RWF 770
>gi|325293235|ref|YP_004279099.1| ATP-dependent RNA helicase [Agrobacterium sp. H13-3]
gi|325061088|gb|ADY64779.1| ATP-dependent RNA helicase [Agrobacterium sp. H13-3]
Length = 533
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 121/417 (29%), Positives = 192/417 (46%), Gaps = 88/417 (21%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-NRA-V 99
A+ + G ++ P+Q I P L +RD+C + TG+GKT S+ LP++ L RA
Sbjct: 45 AIADAGYTTPTPIQAGA----IPPALEKRDICGIAQTGTGKTASFVLPMLTLLEKGRARA 100
Query: 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 159
R R L++ PTR+LA QV + F L+V L +G G+
Sbjct: 101 RMPRTLILEPTRELAAQVAENFEKYGKNHKLNVALLIG-------------------GVS 141
Query: 160 YDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWL 218
++ +D ++L+ D+L+ TPGRL+DH RG + + LV+DE DR+L
Sbjct: 142 FEDQD--RKLERGADVLICTPGRLLDHCE--RGKLLMTGVEILVIDEADRMLDMG----- 192
Query: 219 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ 278
F+P +ER K P+ R + SAT+
Sbjct: 193 --------------------FIPD------------IERIAKMIPFTRQT-LFFSATMPP 219
Query: 279 DPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE----SKLKPLYLVALLQSL--GE 332
+ KLA L +P TR ++ + + K + + S K A+L+ L E
Sbjct: 220 EIQKLADRFLQNP-------TRIEVAKPSSTAKTVTQRIVASHNKDYEKRAVLRDLVRAE 272
Query: 333 E----KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 388
E I+F + + L L+ G + G Q R+ L+ FR+G++ +
Sbjct: 273 EAELKNAIIFCNRKKDVADLFRSLDRHG---FSVGALHGDMDQRSRTTMLQNFRDGQLTL 329
Query: 389 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 445
LV+SD RG+D+ V++V N+D P + + Y+HR GRT RAG+ G+ FTL+ K + K
Sbjct: 330 LVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTLVTKSDAK 386
>gi|196002119|ref|XP_002110927.1| hypothetical protein TRIADDRAFT_21982 [Trichoplax adhaerens]
gi|190586878|gb|EDV26931.1| hypothetical protein TRIADDRAFT_21982 [Trichoplax adhaerens]
Length = 435
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 118/402 (29%), Positives = 178/402 (44%), Gaps = 70/402 (17%)
Query: 60 QETIGPGLFERDLCIN-SPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK 118
QE P + + CI + TGSGKT ++ALPI+Q L+ + AL++ PTR+LA Q+
Sbjct: 32 QEKCIPPILQGQNCIGCAKTGSGKTAAFALPILQNLAKEPF-GIYALILTPTRELAFQLA 90
Query: 119 DVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVA 178
D F A +G+ + +G I + L K+P I++A
Sbjct: 91 DQFRAFGKPIGMRDAIVIGGLDIISQSIALSKKPH---------------------IVIA 129
Query: 179 TPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAST 238
TPGRL D I+ + +LV+DE DRLL ++ L + ++ D + T
Sbjct: 130 TPGRLADLIDNDSKVHFSKIKFLVLDEADRLLEASFGPDLGKIFEILPEDRQ-------T 182
Query: 239 FLPSAFGSLKTIRRCGVERGFKDKPYP-RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 297
L SA + R E KP+ M +SAT+ QLD H+
Sbjct: 183 LLFSATMTNAMAR--AQEVAASKKPFIYEDTDMKISATVE-------QLDQHY------- 226
Query: 298 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEE-------KCIVFTSSVE-STHRLC 349
L+ + +K Y V L++ L E ++FTS+ S R C
Sbjct: 227 --------------LLMPAVVKDCYFVYLIKQLSLELEKNPRWNMMIFTSTYNFSNRRSC 272
Query: 350 TLLN-HFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVV 408
+L L L Q R +L F+ G +++LV++D +RG+D+ V VV
Sbjct: 273 QILAIMLSRLEFSCAALHSLMPQRQRLGSLARFKNGLLKILVATDVASRGLDIPTVEAVV 332
Query: 409 NYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
NY+ P YIHR GRTARAG+ G TL+ + +V R +
Sbjct: 333 NYNVPLSADDYIHRVGRTARAGKKGMAVTLMTQYDVNRIHNI 374
>gi|213647600|ref|ZP_03377653.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
Length = 364
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 122/423 (28%), Positives = 191/423 (45%), Gaps = 77/423 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LNPDILRAIAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 -----SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
+ R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITHQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR P R
Sbjct: 160 RML--------------------------------DMGFIHDIRRV-----LAKLPAKR- 181
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ L +PL + R E++ + + K K L ++
Sbjct: 182 QNLLFSATFSDDIKALAEKLLRNPLEIEVAR-RNTASEQVTQHVHFVDKKRKRELLSQMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GQGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 447
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE K
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 448 KKL 450
+ +
Sbjct: 358 RDI 360
>gi|357418532|ref|YP_004931552.1| ATP-dependent RNA helicase [Pseudoxanthomonas spadix BD-a59]
gi|355336110|gb|AER57511.1| ATP-dependent RNA helicase [Pseudoxanthomonas spadix BD-a59]
Length = 456
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 118/431 (27%), Positives = 191/431 (44%), Gaps = 77/431 (17%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P L AL G + P+Q ++ I L RDL + TG+GKT ++ LP++Q L
Sbjct: 8 LAPFLLRALAEQGYETPTPIQ----EQAIPLALAGRDLMAGAQTGTGKTAAFGLPLLQHL 63
Query: 95 SN------RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
R R RALV+ PTR+LA QV + + S+
Sbjct: 64 GTHPQAVTRGPRRPRALVLTPTRELATQVHESLR---------------------DYSKY 102
Query: 149 IKRPK--LEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDET 206
++ P + G+ P+ L L+ VD+++A PGRL+DH+ R L + LV+DE
Sbjct: 103 LRIPSATIYGGVGMGPQ--LDTLRRGVDLVIACPGRLIDHLE-RRSVDLSGIEVLVLDEA 159
Query: 207 DRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPR 266
DR+L FLPS ++R P
Sbjct: 160 DRMLDMG-------------------------FLPS------------IKRILAKLPKQN 182
Query: 267 LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVAL 326
++ SAT + LA+ +H PL + + + E + +S K L+ L
Sbjct: 183 RQTLLFSATFDDNIKLLAREFMHDPLEIQA-TPKNTVHENITHRVHPVDSARKRDLLLHL 241
Query: 327 LQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 386
L E+ +VF + + +L L G I+ G + QS R + L+ F+ GK+
Sbjct: 242 LAEDSREQTLVFAKTKHGSDKLALFLEKAG---IQTAAIHGNKSQSQRLRALRDFKAGKV 298
Query: 387 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 446
VLV++D RG+D++ + V+N+D P + Y+HR GRT R G G+ +L+ +++ K
Sbjct: 299 TVLVATDIAARGIDIDQLPKVINFDLPMVAEDYVHRIGRTGRNGSTGQAVSLVSQEDAKL 358
Query: 447 FKKLLQKADND 457
+ +++ D D
Sbjct: 359 LRAIVRLLDRD 369
>gi|162451888|ref|YP_001614255.1| hypothetical protein sce3615 [Sorangium cellulosum So ce56]
gi|161162470|emb|CAN93775.1| unnamed protein product [Sorangium cellulosum So ce56]
Length = 812
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 117/419 (27%), Positives = 186/419 (44%), Gaps = 76/419 (18%)
Query: 29 LDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL 88
D LP L L+ L +G PVQ+AVW+ P RD + + TG+GKT ++ L
Sbjct: 30 FDVLP-LSSELRETLAEIGYVHPTPVQLAVWE----PVTRGRDAVVQARTGTGKTAAFGL 84
Query: 89 PIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
PIV R++ + L + PTR+LALQV + G+ V G + + +I L
Sbjct: 85 PIVDHAVKRSLAQAQVLALCPTRELALQVSAEVERLGKRKGIKVVAVYGGAPMQRQIDAL 144
Query: 149 IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETD 207
+ ++V TPGR++DH+ RG +H+ LV+DE D
Sbjct: 145 A---------------------AGAQVIVGTPGRVLDHLR--RGTIVAKHIRLLVLDECD 181
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
+L ++ L +L LP P
Sbjct: 182 EMLSMGFERELTAIL---------------AELP-----------------------PER 203
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLT-TGETRYKLPERLESY-KLICESKLKPLYLVA 325
++ SATL D ++A+ L P F+T +G+ L +++ Y LI KL LV
Sbjct: 204 QTLLFSATLPPDIERIARSKLRSPEFITLSGDAVGAL--QIQHYVYLITGDKL--TSLVR 259
Query: 326 LLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 385
+++ E ++F ++ + T + L G +G QS R K + A REG+
Sbjct: 260 IIEVENPENAVIFCNTKDETEAVAGALKRQG---YDADWLNGDLPQSDREKVMSATREGR 316
Query: 386 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444
++ LV++D RG+D+ + +V+NYD P + Y+HR GRT RAG+ G L+ +V
Sbjct: 317 LRFLVATDVAARGIDISHLTHVINYDFPQDAEAYVHRTGRTGRAGRTGTAIALITPQDV 375
>gi|161523807|ref|YP_001578819.1| DEAD/DEAH box helicase [Burkholderia multivorans ATCC 17616]
gi|189351431|ref|YP_001947059.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
gi|160341236|gb|ABX14322.1| DEAD/DEAH box helicase domain protein [Burkholderia multivorans
ATCC 17616]
gi|189335453|dbj|BAG44523.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
Length = 480
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 129/452 (28%), Positives = 196/452 (43%), Gaps = 81/452 (17%)
Query: 29 LDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL 88
+ L +P +K A+ +G +S P+Q +G G DL + TG+GKT + L
Sbjct: 3 FESLGLAEPLVK-AVNELGYTSPTPIQQQAIPAVLGGG----DLLAGAQTGTGKTAGFTL 57
Query: 89 PIVQTLSN------RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIA 142
PI+Q L A R +RAL++ PTR+LA QV++ A + + L + G SI
Sbjct: 58 PILQRLHTFYTEHRSAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSI- 116
Query: 143 DEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLV 202
P+++A L+ VDI+VATPGRL+DH+ + L L LV
Sbjct: 117 --------NPQIDA------------LKRGVDIVVATPGRLLDHMQ-QKTIDLSDLDILV 155
Query: 203 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDK 262
+DE DR+L G + I+R K
Sbjct: 156 LDEADRML--------------------------------DMGFIHDIKRVLA------K 177
Query: 263 PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLY 322
PR ++ SAT + + LA L P + R E + + K
Sbjct: 178 LPPRRQNLLFSATFSDEIKALADSLLDSPALIEVAR-RNTTAETVAQKIHPVDRDRKREL 236
Query: 323 LVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR 382
L L++ + +VFT + +RL L G I G + QS R++ L F+
Sbjct: 237 LTHLIREHNWFQVLVFTRTKHGANRLAEQLTKDG---ISAMAIHGNKSQSARTRALAEFK 293
Query: 383 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD 442
+QVLV++D RG+D++ + +VVN+D P + Y+HR GRT RAG G +L+ D
Sbjct: 294 NNTLQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVD 353
Query: 443 EVKRFKKLLQKADNDSCPIHSIPSSLIESLRP 474
E K+LL+ D + IP +I P
Sbjct: 354 E----KQLLR--DIERLIKREIPREVIAGFEP 379
>gi|390341643|ref|XP_784918.3| PREDICTED: probable ATP-dependent RNA helicase DDX31-like
[Strongylocentrotus purpuratus]
Length = 718
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 139/489 (28%), Positives = 216/489 (44%), Gaps = 69/489 (14%)
Query: 22 SLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSG 81
++F LP + +N+G S + VQ Q I L +D I S TG+G
Sbjct: 108 AIFSSTQFSELPLHSFMISNIEKNLGFSQMTTVQ----QRAIPTLLHGQDTLIKSQTGTG 163
Query: 82 KTLSYALPIVQTLSNRAVRCLR-----ALVVLPTRDLALQ-VKDVFAAIAPAVGLSVGLA 135
KTL+YA+P+VQ L + R AL+++PTR+LA Q + + + P + G+
Sbjct: 164 KTLAYAVPVVQQLQGLQPKVQRLHGPYALILVPTRELACQSFETLVKLVKPFHWIVPGVL 223
Query: 136 VGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTL 195
+G ++ K E G ++ ++ILV+TPGRL+DHIN T T
Sbjct: 224 MGG-----------EKKKSEKG----------RIRKGINILVSTPGRLVDHINTTEALTF 262
Query: 196 EHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGV 255
+ ++++DE DRLL ++ + T+L +N+ T L SA S R +
Sbjct: 263 SRVRWVILDEADRLLDLGFEKDVTTILNAINEQCQNQ---KQTVLVSATLSEGVKRLANI 319
Query: 256 ERGFKDKPYPRLVKMVLSATL-----------TQD---PNKL-AQLDLHHPLFLTTGETR 300
KD + + K L L T++ P K +Q +
Sbjct: 320 T--LKDPVFIDVAKHQLDKALPPAPWSASSSSTEEKLRPAKTGSQTEETGEGETGEDAEM 377
Query: 301 YKLPERLESYKLICESKLKPLYLVALL----QSLGEEKCIVFTSSVESTH---------R 347
+ +PERL+ I SKL+ + L AL+ +S K +VF SS ES +
Sbjct: 378 FSVPERLKQQFAIVPSKLRLVALTALVAGGFKSPSGCKMLVFLSSCESVDFHYTLFQACK 437
Query: 348 LCTLLNHFGELR----IKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG 403
C++L G + + G Q+ R K AF E + VL+ +D RG+D+
Sbjct: 438 GCSILKEDGTASKREGMPLFRLHGSMSQAERIKMYHAFSEARKGVLLCTDVAARGLDLPK 497
Query: 404 VNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL-LQKADNDSCPIH 462
V +V Y+ P Y+HR GRTAR G+ G+ L EV+ + L Q+ P+
Sbjct: 498 VKWIVQYNIPGSAADYVHRVGRTARIGKEGQALLFLAPSEVEYIRILEEQQIRIKEQPLD 557
Query: 463 SIPSSLIES 471
I SSL+ S
Sbjct: 558 DILSSLMTS 566
>gi|334322496|ref|XP_001371632.2| PREDICTED: probable ATP-dependent RNA helicase DDX52 isoform 1
[Monodelphis domestica]
Length = 604
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 123/447 (27%), Positives = 196/447 (43%), Gaps = 71/447 (15%)
Query: 29 LDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL 88
LD + RL + N G + P+Q+ + I L R+L ++PTGSGKTL++++
Sbjct: 170 LDQEYKIHSRLLQNILNAGFQNPTPIQM----QAIPVMLHGRELLASAPTGSGKTLAFSI 225
Query: 89 PIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
PI+ L + RAL++ PTR+LA Q ++ G + + + ++++A +
Sbjct: 226 PILMQLKQPTNKGFRALIISPTRELASQTHRELVRLSEGTGFRIHM-IHKAAVAAK---- 280
Query: 149 IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR-GFTLEHLCYLVVDETD 207
+ P+ DILV TP RL+ + G L+++ +LVVDE+D
Sbjct: 281 ----------KFGPKS-----SKKFDILVTTPNRLIYLLKQDPPGIDLKNVEWLVVDESD 325
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
+L D + F D F+ A S K +RR
Sbjct: 326 KLF----------------EDGKTGFRDQLAFIFLACTSHK-VRRA-------------- 354
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL-KPLYLVAL 326
+ SAT D + +L+L + ++ G R E +E L S+ K L + L
Sbjct: 355 ---MFSATFAHDVEQWCKLNLDSVISVSIG-ARNSAAETVEQELLFVGSETGKLLAIRDL 410
Query: 327 LQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 386
++ +VF S+E L L + G I + + Q R T+ +FR GKI
Sbjct: 411 IKKGFHPPVLVFVQSIERAKELFHELIYEG---INVDVIHAERTQQQRDNTVHSFRAGKI 467
Query: 387 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 446
VL+ + + RG+D +GVN V+NYD P YIHR GRT RAG G+ T +D+
Sbjct: 468 WVLICTALLARGIDFKGVNLVINYDFPTSAVEYIHRIGRTGRAGHKGKAVTFFTEDDKPL 527
Query: 447 FKKLLQKADNDSCPI-------HSIPS 466
+ + CP+ H +PS
Sbjct: 528 LRSVANVIQQAGCPVPEYIRSFHKLPS 554
>gi|221200134|ref|ZP_03573177.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
CGD2M]
gi|221206713|ref|ZP_03579725.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
CGD2]
gi|221173368|gb|EEE05803.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
CGD2]
gi|221180373|gb|EEE12777.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
CGD2M]
Length = 480
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 129/452 (28%), Positives = 196/452 (43%), Gaps = 81/452 (17%)
Query: 29 LDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL 88
+ L +P +K A+ +G +S P+Q +G G DL + TG+GKT + L
Sbjct: 3 FESLGLAEPLVK-AVNELGYTSPTPIQQQAIPAVLGGG----DLLAGAQTGTGKTAGFTL 57
Query: 89 PIVQTLSN------RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIA 142
PI+Q L A R +RAL++ PTR+LA QV++ A + + L + G SI
Sbjct: 58 PILQRLHTFYTEHRSAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSI- 116
Query: 143 DEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLV 202
P+++A L+ VDI+VATPGRL+DH+ + L L LV
Sbjct: 117 --------NPQIDA------------LKRGVDIVVATPGRLLDHMQ-QKTIDLSDLDILV 155
Query: 203 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDK 262
+DE DR+L G + I+R K
Sbjct: 156 LDEADRML--------------------------------DMGFIHDIKRVLA------K 177
Query: 263 PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLY 322
PR ++ SAT + + LA L P + R E + + K
Sbjct: 178 LPPRRQNLLFSATFSDEIKALADSLLDSPALIEVAR-RNTTAETVAQKIHPVDRDRKREL 236
Query: 323 LVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR 382
L L++ + +VFT + +RL L G I G + QS R++ L F+
Sbjct: 237 LTHLIREHNWFQVLVFTRTKHGANRLAEQLTKDG---ISAMAIHGNKSQSARTRALAEFK 293
Query: 383 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD 442
+QVLV++D RG+D++ + +VVN+D P + Y+HR GRT RAG G +L+ D
Sbjct: 294 NNTLQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVD 353
Query: 443 EVKRFKKLLQKADNDSCPIHSIPSSLIESLRP 474
E K+LL+ D + IP +I P
Sbjct: 354 E----KQLLR--DIERLIKREIPREVIAGFEP 379
>gi|330828264|ref|YP_004391216.1| ATP-dependent RNA helicase SrmB [Aeromonas veronii B565]
gi|406678532|ref|ZP_11085707.1| hypothetical protein HMPREF1170_03915 [Aeromonas veronii AMC35]
gi|423205247|ref|ZP_17191803.1| hypothetical protein HMPREF1168_01438 [Aeromonas veronii AMC34]
gi|423211047|ref|ZP_17197600.1| hypothetical protein HMPREF1169_03118 [Aeromonas veronii AER397]
gi|328803400|gb|AEB48599.1| ATP-dependent RNA helicase SrmB [Aeromonas veronii B565]
gi|404614049|gb|EKB11053.1| hypothetical protein HMPREF1169_03118 [Aeromonas veronii AER397]
gi|404621645|gb|EKB18511.1| hypothetical protein HMPREF1170_03915 [Aeromonas veronii AMC35]
gi|404624330|gb|EKB21165.1| hypothetical protein HMPREF1168_01438 [Aeromonas veronii AMC34]
Length = 407
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 126/451 (27%), Positives = 193/451 (42%), Gaps = 79/451 (17%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P L AL MG F + Q + P L RD+ ++PTG+GKT S+ LP +Q L
Sbjct: 10 LHPALNRALAEMG----FTRPTTIQQMVLEPALDGRDILASAPTGTGKTASFLLPALQHL 65
Query: 95 SNRAVR----CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIK 150
+ R C R L++ PTR+LALQV A+A LS+ +G
Sbjct: 66 LDFPRRKPGPC-RMLILTPTRELALQVTAHAKALAAHTNLSIETIIG------------- 111
Query: 151 RPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 210
G+ + E+ L L DI+VATPGRL+++I F + LV+DE DR+L
Sbjct: 112 ------GVSH--EEQLPALTKTTDIVVATPGRLLEYIEKEE-FESHDIEVLVLDEADRML 162
Query: 211 REAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270
G +K + R E ++ M
Sbjct: 163 D--------------------------------MGFIKDVNRIVAEARYRKH------TM 184
Query: 271 VLSATLT-QDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329
+ SATL K A L P+ L R + + L ++ K L +L+
Sbjct: 185 LFSATLEGAGLEKFANEILKDPVELHAEPPRSERRPITQWIHLADDAAHKLALLTHILKD 244
Query: 330 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 389
+K I+F V++ RL L I G QS R ++++ F EG++ L
Sbjct: 245 PETQKAIIF---VKTRERLAELSGQLQAAGISCAWIRGEMEQSKRIESIRKFHEGEVPFL 301
Query: 390 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKK 449
+++D RG+D+ V++V+NYD P Y+HR GRT RAG G +L+ ++ K
Sbjct: 302 IATDVAARGIDLPNVSHVINYDMPYGADVYVHRIGRTGRAGNRGCAISLVEAHDMAMVAK 361
Query: 450 LLQKADNDSCPIHSIPSSLIESLRPVYKSVR 480
+ + + + +I+ LRP +K R
Sbjct: 362 IERYTEE------RLKRRVIDELRPKHKEAR 386
>gi|334322494|ref|XP_003340257.1| PREDICTED: probable ATP-dependent RNA helicase DDX52 isoform 2
[Monodelphis domestica]
Length = 608
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 123/447 (27%), Positives = 196/447 (43%), Gaps = 71/447 (15%)
Query: 29 LDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL 88
LD + RL + N G + P+Q+ + I L R+L ++PTGSGKTL++++
Sbjct: 174 LDQEYKIHSRLLQNILNAGFQNPTPIQM----QAIPVMLHGRELLASAPTGSGKTLAFSI 229
Query: 89 PIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
PI+ L + RAL++ PTR+LA Q ++ G + + + ++++A +
Sbjct: 230 PILMQLKQPTNKGFRALIISPTRELASQTHRELVRLSEGTGFRIHM-IHKAAVAAK---- 284
Query: 149 IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR-GFTLEHLCYLVVDETD 207
+ P+ DILV TP RL+ + G L+++ +LVVDE+D
Sbjct: 285 ----------KFGPKS-----SKKFDILVTTPNRLIYLLKQDPPGIDLKNVEWLVVDESD 329
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
+L D + F D F+ A S K +RR
Sbjct: 330 KLF----------------EDGKTGFRDQLAFIFLACTSHK-VRRA-------------- 358
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL-KPLYLVAL 326
+ SAT D + +L+L + ++ G R E +E L S+ K L + L
Sbjct: 359 ---MFSATFAHDVEQWCKLNLDSVISVSIG-ARNSAAETVEQELLFVGSETGKLLAIRDL 414
Query: 327 LQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 386
++ +VF S+E L L + G I + + Q R T+ +FR GKI
Sbjct: 415 IKKGFHPPVLVFVQSIERAKELFHELIYEG---INVDVIHAERTQQQRDNTVHSFRAGKI 471
Query: 387 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 446
VL+ + + RG+D +GVN V+NYD P YIHR GRT RAG G+ T +D+
Sbjct: 472 WVLICTALLARGIDFKGVNLVINYDFPTSAVEYIHRIGRTGRAGHKGKAVTFFTEDDKPL 531
Query: 447 FKKLLQKADNDSCPI-------HSIPS 466
+ + CP+ H +PS
Sbjct: 532 LRSVANVIQQAGCPVPEYIRSFHKLPS 558
>gi|346992915|ref|ZP_08860987.1| ATP-dependent RNA helicase RhlE [Ruegeria sp. TW15]
Length = 455
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 124/416 (29%), Positives = 189/416 (45%), Gaps = 81/416 (19%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+P++ A++ G + P+Q + I L RD+ + TG+GKT S+ LP++ L
Sbjct: 14 LNPKVLKAIEEAGYETPTPIQ----EGAIPAALEGRDVLGIAQTGTGKTASFTLPMITLL 69
Query: 95 S-NRA-VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
+ RA R R+LV+ PTR+LA QV + F A + L+ L +G
Sbjct: 70 ARGRARARMPRSLVLCPTRELAAQVAENFDTYAKHLKLTKALLIG--------------- 114
Query: 153 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLR 211
G+ + +D L + VD+L+ATPGRL+DH RG L + +VVDE DR+L
Sbjct: 115 ----GVSFKEQDAL--IDRGVDVLIATPGRLLDHFE--RGKLLLTGVQIMVVDEADRMLD 166
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
F+P +ER F P+ R +
Sbjct: 167 MG-------------------------FIPD------------IERIFSLTPFTRQT-LF 188
Query: 272 LSATLTQDPNKLAQLDLHHPLFL------TTGETRYKLPERLESYKLICESKLKPLYLVA 325
SAT+ + ++ L P + T ET + + + E+ K L A
Sbjct: 189 FSATMAPEIERITDTFLSAPTRVEVARQATASETIEQGVVMFKGGRRDREASQKRKTLRA 248
Query: 326 LLQSLGEEKC---IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR 382
L+ S GE KC I+F + L +G I G QS R KTL FR
Sbjct: 249 LIDSEGE-KCTNAIIFCNRKTDVDICAKSLKKYGYNAAAI---HGDLDQSQRMKTLDGFR 304
Query: 383 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 438
+G +++LV+SD RG+D+ V++V N+D P + + Y+HR GRT RAG+ G+ T+
Sbjct: 305 DGSLRLLVASDVAARGLDIPSVSHVFNFDVPGHAEDYVHRIGRTGRAGREGKAITI 360
>gi|399545428|ref|YP_006558736.1| ATP-dependent RNA helicase rhlB [Marinobacter sp. BSs20148]
gi|399160760|gb|AFP31323.1| ATP-dependent RNA helicase rhlB [Marinobacter sp. BSs20148]
Length = 463
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 127/428 (29%), Positives = 187/428 (43%), Gaps = 80/428 (18%)
Query: 24 FEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKT 83
F D LDH RL+ A+ +G P+Q ET+ L +DL + TG+GKT
Sbjct: 44 FSDLNLDH------RLQQAIAAIGFEYCTPIQA----ETLPWTLACQDLIGQAQTGTGKT 93
Query: 84 LSYALPIVQTL-------SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAV 136
++ + +QT+ S R R L + PTR+LA+Q+ + G V V
Sbjct: 94 AAFLITAIQTMLETPIEDSKRFASEPRVLALAPTRELAMQIAKDAEQLCAHTGHKVVTVV 153
Query: 137 GQSSIADEISELIKRPKLEAGICYDPE-DVLQELQSAVDILVATPGRLMDHINATRGFTL 195
G G+ YD + D LQ VDILVATPGRL+D + + F L
Sbjct: 154 G-------------------GMHYDKQRDQLQ--NEVVDILVATPGRLIDFLGSQDVF-L 191
Query: 196 EHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGV 255
+ + L++DE DR+L ++P V ++ IR+C
Sbjct: 192 DQIDILILDEADRMLD---MGFIPDVKRI-------------------------IRKC-- 221
Query: 256 ERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE 315
P ++ SAT QD LA + F+ E K ER+E +
Sbjct: 222 ------TPKEDRQTLLFSATFNQDVLNLASMWTQSAEFVEI-EPEQKTAERVEQTVYLVG 274
Query: 316 SKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRS 375
K LV L+ +K +VF + + L L + G + + SG Q+ R
Sbjct: 275 DDEKLRVLVNYLKRPEVDKALVFANRRDQCRDLEEDLRNQG---VSVSLMSGEIAQAKRL 331
Query: 376 KTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRC 435
KTL+ F+ G IQVLV++D RG+ V GV +V NY+ P + Y+HR GRT RAG G
Sbjct: 332 KTLEQFKAGSIQVLVATDVAGRGIHVNGVTHVFNYNLPDNAEDYVHRIGRTGRAGSTGVS 391
Query: 436 FTLLHKDE 443
+ +D+
Sbjct: 392 ISFAGEDD 399
>gi|358450610|ref|ZP_09161068.1| DEAD/DEAH box helicase domain-containing protein [Marinobacter
manganoxydans MnI7-9]
gi|357225259|gb|EHJ03766.1| DEAD/DEAH box helicase domain-containing protein [Marinobacter
manganoxydans MnI7-9]
Length = 427
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 126/417 (30%), Positives = 187/417 (44%), Gaps = 74/417 (17%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LD RL A+ +G P+Q ET+ L DL + TG+GKT ++ + +Q+L
Sbjct: 18 LDKRLLDAITAIGFEYCTPIQA----ETLPWTLACEDLIGQAQTGTGKTAAFLITAIQSL 73
Query: 95 -------SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISE 147
++R R L + PTR+LA+Q+ + G +V VG
Sbjct: 74 LETPIPETDRFASEPRVLALAPTRELAMQIAKDAEQLCQHTGHNVVTVVG---------- 123
Query: 148 LIKRPKLEAGICYDPE-DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDET 206
G+ YD + D LQ VDILVATPGRL+D + + F L+ L L++DE
Sbjct: 124 ---------GMNYDKQRDQLQ--NEIVDILVATPGRLIDFLGSQDVF-LDQLDILILDEA 171
Query: 207 DRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPR 266
DR+L ++P V ++ IR+C P
Sbjct: 172 DRMLD---MGFIPDVKRI-------------------------IRKC--------TPKDE 195
Query: 267 LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVAL 326
++ SAT QD LA + + F+ E K ER+E + K LV
Sbjct: 196 RQTLLFSATFNQDVLNLASMWTSNAEFVEI-EPEQKTAERVEQTVYLVGDDEKLPVLVNF 254
Query: 327 LQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 386
L+ EK +VF + + L L + G +K+ SG Q+ R KTL F++G I
Sbjct: 255 LKRPEVEKALVFANRRDQCRDLEEDLRNQG---VKVALMSGEIAQNKRLKTLDQFKKGSI 311
Query: 387 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443
QVLV++D RG+ V GV +V NY+ P + Y+HR GRT RAG+ G + +D+
Sbjct: 312 QVLVATDVAGRGIHVNGVTHVFNYNLPDNAEDYVHRIGRTGRAGKHGVSISFAGEDD 368
>gi|222148785|ref|YP_002549742.1| ATP-dependent RNA helicase [Agrobacterium vitis S4]
gi|221735771|gb|ACM36734.1| ATP-dependent RNA helicase [Agrobacterium vitis S4]
Length = 516
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 134/473 (28%), Positives = 215/473 (45%), Gaps = 87/473 (18%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-NRA-V 99
A+ + G + P+Q I P L RD+C + TG+GKT S+ LP++ L RA
Sbjct: 8 AVTDAGYTVPTPIQAGA----IPPALMRRDICGIAQTGTGKTASFVLPMLTLLEKGRARA 63
Query: 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 159
R R L++ PTR+LA QV + F L++ L +G G+
Sbjct: 64 RMPRTLIMEPTRELAAQVAENFEKYGKNHKLNIALLIG-------------------GVS 104
Query: 160 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 219
+D +D ++L+ D+L+ TPGRL+DH + + + LV+DE DR+L
Sbjct: 105 FDEQD--RKLERGADVLICTPGRLLDHCERGK-LLMTGVEILVIDEADRMLDMG------ 155
Query: 220 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 279
F+P +ER K P+ R + SAT+ +
Sbjct: 156 -------------------FIPD------------IERIAKLIPFTRQT-LFFSATMPPE 183
Query: 280 PNKLAQLDLHHPLFLTTG---ETRYKLPERLESYKLICESK--LKPLYLVALLQSLGEEK 334
KLA L +P + T + +RL + C++K K L ++++ + K
Sbjct: 184 IQKLADKFLQNPERIEVAPPSSTAKTVTQRL----VACQNKDYEKRSTLRDIIRAQDDLK 239
Query: 335 -CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 393
I+F + + L L G + G Q R+ L F++ +I +LV+SD
Sbjct: 240 NAIIFCNRKKDVADLFRSLERHG---FSVGALHGDMDQRSRTNMLAGFKDNQITLLVASD 296
Query: 394 AMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK---RFKKL 450
RG+D+ V++V N+D P + + Y+HR GRT RAG+ GR FTL+ K + K +KL
Sbjct: 297 VAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGRAFTLVTKSDAKYLDAIEKL 356
Query: 451 L-QKADNDSCPIHSIPSSLIESLRPVYKSVRGGISDEAFWKVGCDLHGVNRVR 502
+ +K + + S+P + E R + RGG + A K G D +G +R R
Sbjct: 357 IGEKPEWLDGDVASLP-PMAEGDRDERRG-RGGKN--ARDKSGSDRNGSDRGR 405
>gi|126667283|ref|ZP_01738256.1| ATP-dependent RNA helicase [Marinobacter sp. ELB17]
gi|126628228|gb|EAZ98852.1| ATP-dependent RNA helicase [Marinobacter sp. ELB17]
Length = 463
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 127/428 (29%), Positives = 187/428 (43%), Gaps = 80/428 (18%)
Query: 24 FEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKT 83
F D LDH RL+ A+ +G P+Q ET+ L +DL + TG+GKT
Sbjct: 44 FSDLNLDH------RLQQAIAAIGFEYCTPIQA----ETLPWTLACQDLIGQAQTGTGKT 93
Query: 84 LSYALPIVQTL-------SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAV 136
++ + +QT+ S R R L + PTR+LA+Q+ + G V V
Sbjct: 94 AAFLITAIQTMLETPIEDSKRFASEPRVLALAPTRELAMQIAKDAEQLCAHTGHKVVTVV 153
Query: 137 GQSSIADEISELIKRPKLEAGICYDPE-DVLQELQSAVDILVATPGRLMDHINATRGFTL 195
G G+ YD + D LQ VDILVATPGRL+D + + F L
Sbjct: 154 G-------------------GMHYDKQRDQLQ--NEVVDILVATPGRLIDFLGSQDVF-L 191
Query: 196 EHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGV 255
+ + L++DE DR+L ++P V ++ IR+C
Sbjct: 192 DQIDILILDEADRMLD---MGFIPDVKRI-------------------------IRKC-- 221
Query: 256 ERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE 315
P ++ SAT QD LA + F+ E K ER+E +
Sbjct: 222 ------TPKEDRQTLLFSATFNQDVLNLASMWTQSAEFVEI-EPEQKTAERVEQTVYLVG 274
Query: 316 SKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRS 375
K LV L+ +K +VF + + L L + G + + SG Q+ R
Sbjct: 275 DDEKLRVLVNYLKRPEVDKALVFANRRDQCRDLEEDLRNQG---VSVSLMSGEIAQAKRL 331
Query: 376 KTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRC 435
KTL+ F+ G IQVLV++D RG+ V GV +V NY+ P + Y+HR GRT RAG G
Sbjct: 332 KTLEQFKAGSIQVLVATDVAGRGIHVNGVTHVFNYNLPDNAEDYVHRIGRTGRAGSTGVS 391
Query: 436 FTLLHKDE 443
+ +D+
Sbjct: 392 ISFAGEDD 399
>gi|419220091|ref|ZP_13763043.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC8E]
gi|378071325|gb|EHW33395.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC8E]
Length = 454
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 124/429 (28%), Positives = 195/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR + K +
Sbjct: 160 RMLD--------------------------------MGFIHDIRRVLTKLPAKRQ----- 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIC 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+H GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHHIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|261193383|ref|XP_002623097.1| ATP-dependent RNA helicase DBP10 [Ajellomyces dermatitidis
SLH14081]
gi|239588702|gb|EEQ71345.1| ATP-dependent RNA helicase DBP10 [Ajellomyces dermatitidis
SLH14081]
Length = 945
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 114/419 (27%), Positives = 190/419 (45%), Gaps = 48/419 (11%)
Query: 42 ALQNMGISSL---------FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQ 92
Q+MG+++ F V + ++TI L ++D+ + TGSGKT ++ +P+++
Sbjct: 87 GFQSMGLNATLLKAITRKGFSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVIPMIE 146
Query: 93 TLSNRAVR-CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
L N + + RAL++LP+R+LALQ V + L L VG S+ ++ +
Sbjct: 147 KLKNHSAKFGSRALILLPSRELALQTLKVVKELGRGTDLKSVLLVGGDSLEEQFEYMAGN 206
Query: 152 PKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 211
P DI++ATPGR + H+ L + Y+V DE DRL
Sbjct: 207 P---------------------DIIIATPGRFL-HLKVEMSLDLSSIRYVVFDEADRLFE 244
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVER------GFKDKPYP 265
+ A L +L S + A+ LP SL R G++ + K P
Sbjct: 245 MGFAAQLTEILHGLPSSRQTLLFSAT--LPK---SLVEFARAGLQEPTLIRLDAESKISP 299
Query: 266 RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVA 325
L + ++ L L LH + + TGET + E+ K + K +
Sbjct: 300 DLQNAFFTVKSSEKEGALLHL-LHEVIKIPTGETEAHKRAKEEA-KNPRKRKRSEFASNS 357
Query: 326 LLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 385
+S E I+FT++ L ++L G + G Q+ R ++ FR G
Sbjct: 358 HKESPTEHSTIIFTATKHHVDYLVSILRISG---FAVSYAYGSLDQTARKIEVQNFRSGI 414
Query: 386 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444
+LV +D RG+D+ ++NV+NYD P+ K ++HR GRTARAG+ G ++L+ + +
Sbjct: 415 THILVVTDVAARGIDIPILSNVINYDFPSQAKIFVHRVGRTARAGKTGWSYSLIRESDA 473
>gi|261212229|ref|ZP_05926515.1| ATP-dependent RNA helicase SrmB [Vibrio sp. RC341]
gi|260838837|gb|EEX65488.1| ATP-dependent RNA helicase SrmB [Vibrio sp. RC341]
Length = 421
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 128/415 (30%), Positives = 196/415 (47%), Gaps = 82/415 (19%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LDP L A++ MG S P QV E I L RD+ ++PTG+GKT ++A+P +Q L
Sbjct: 10 LDPILLEAIEEMGFSR--PTQVQA--EAIPQALDGRDVLASAPTGTGKTAAFAIPALQYL 65
Query: 95 SN---RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
+ R R L++ PTR+LA+QV + A+A L++ G
Sbjct: 66 LDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITG-------------- 111
Query: 152 PKLEAGICY-DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 210
G+ Y + D+L Q DI+VATPGRL+++I+A R F + +L++DE DR+L
Sbjct: 112 -----GVQYQEHADILATTQ---DIVVATPGRLLEYIDAER-FDCRAIEWLILDEADRML 162
Query: 211 REAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270
+ PTV +L+ E R+ T L SA T+ GVE GF
Sbjct: 163 DMGFG---PTVDRLS---TECRWR-KQTLLFSA-----TLEGRGVE-GF----------- 198
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRY-----KLPERLESYKLICESKLKPLYLVA 325
+A L +DP A +D P +++ +P ++E K I +
Sbjct: 199 --TADLLKDP---AHVDAEPPRRERKKISQWYHRADDMPHKVELLKKILTEQ-------- 245
Query: 326 LLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 385
E+ IVF + E RL L + +I G Q R+ + FREG
Sbjct: 246 ------AERSIVFLKTRE---RLADLRAELEKAQIPCAWIQGEMPQDRRNNAITRFREGD 296
Query: 386 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 440
+ +L+++D RG+DV +++V+N+D P Y+HR GRT RAG+ G +L+
Sbjct: 297 VNILLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVE 351
>gi|84516715|ref|ZP_01004073.1| ATP-dependent RNA helicase RhlE [Loktanella vestfoldensis SKA53]
gi|84509183|gb|EAQ05642.1| ATP-dependent RNA helicase RhlE [Loktanella vestfoldensis SKA53]
Length = 498
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 119/410 (29%), Positives = 189/410 (46%), Gaps = 79/410 (19%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LDP++ A+ G + P+Q I P L RD+ + TG+GKT ++ LP++ L
Sbjct: 9 LDPKVLKAVAETGYDTPTPIQ----DGAIPPALEGRDVLGIAQTGTGKTAAFTLPMITLL 64
Query: 95 S-NRA-VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
RA R R+LV+ PTR+LA QV + F A L+ L +G +S D+ +LI +
Sbjct: 65 GRGRARARMPRSLVLAPTRELAAQVAENFDTYAKYTKLTKALLIGGTSFKDQ-DKLIDK- 122
Query: 153 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLR 211
VD+L+ATPGRL+DH+ RG L + +VVDE DR+L
Sbjct: 123 -------------------GVDVLIATPGRLLDHLE--RGKLILTDVKIMVVDEADRMLD 161
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
F+P +E FK P+ R +
Sbjct: 162 MG-------------------------FIPD------------IEEIFKRTPFTRQT-LF 183
Query: 272 LSATLTQDPNKLAQLDLHHPLFLTTGE---TRYKLPERLESYKL---ICESKLKPLYLVA 325
SAT+ + ++ L +P + T + + + ++ + E+ K L A
Sbjct: 184 FSATMAPEIERITNTFLSNPAKVEVARAATTNVNIKQGVVMFRASAKLREATEKRALLRA 243
Query: 326 LLQSLGE--EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 383
L+ + G+ I+F + + LN +G I G QS R++TL++FR+
Sbjct: 244 LINAEGDACSNAIIFCNRKADVDVVAKSLNKYGYDAAPI---HGDLEQSHRTRTLESFRD 300
Query: 384 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 433
K++ LV+SD RG+D+ V +V N+D P++ + Y+HR GRT RAG+ G
Sbjct: 301 NKLRFLVASDVAARGLDIPAVTHVFNFDVPSHAEDYVHRIGRTGRAGRSG 350
>gi|195173765|ref|XP_002027657.1| GL15985 [Drosophila persimilis]
gi|198470361|ref|XP_001355297.2| GA14086 [Drosophila pseudoobscura pseudoobscura]
gi|194114592|gb|EDW36635.1| GL15985 [Drosophila persimilis]
gi|198145414|gb|EAL32354.2| GA14086 [Drosophila pseudoobscura pseudoobscura]
Length = 558
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 121/458 (26%), Positives = 205/458 (44%), Gaps = 106/458 (23%)
Query: 15 MRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFE-RDLC 73
M SP + F + LDH R+ A+ +G Q + Q T P L E +D+
Sbjct: 1 MSSPEKLPKFHELELDH------RILKAVSKLGWE-----QPTLIQGTAIPLLLEGKDVV 49
Query: 74 INSPTGSGKTLSYALPIVQTLSNRAV----RCLRALVVLPTRDLALQVKDVFAAIAPAVG 129
+ + TGSGKT +YALP++Q + N + +C+ A+V+ PT++L Q + V +A
Sbjct: 50 VRARTGSGKTATYALPLIQKILNSKLTATEQCVSAVVLAPTKELCRQSRAVIEQLAEYCH 109
Query: 130 LSVGLAVGQSSIADEISE---LIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDH 186
V +A + ++ ++E L +RP DI+VATP +L++H
Sbjct: 110 KVVRVADISGTTSNTVTERHALAERP---------------------DIVVATPAKLLNH 148
Query: 187 INATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS 246
A L+ + LVVDE D + Y+ +L+ LPS + S
Sbjct: 149 AKADGVVDLKKVETLVVDEADLIFAFGYEMDFKALLK---------------HLPSIYQS 193
Query: 247 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPER 306
+ ++SATL+ D ++ L LH+P+ L E ++
Sbjct: 194 V-----------------------LVSATLSDDVVRMKGLCLHNPVTLKLEEPDVVSQDQ 230
Query: 307 LESYKLICESKLKPLYLVALLQ-SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEY 365
L +++ E KP+ L ALL+ L K I+F ++++ ++++ L FG I+
Sbjct: 231 LTHQRILAEENDKPVILYALLKLQLIRGKTIIFVNTIDRSYKIRLFLEQFG---IRACVL 287
Query: 366 SGLQRQSVRSKTLKAFREGKIQVLVSSD------------------------AMTRGMDV 401
+ S+R + F +G ++++SD + +RG+D
Sbjct: 288 NPQLPASIRINMISQFNKGTYDIIIASDQHYLERPDNGSQDKRKSTRGDFESSASRGIDF 347
Query: 402 EGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439
+ VNNV+N+D P + +YIHRAGRTAR G +L+
Sbjct: 348 QSVNNVINFDFPLDVTSYIHRAGRTARGNNKGSVLSLV 385
>gi|407366305|ref|ZP_11112837.1| ATP-dependent RNA helicase RhlB [Pseudomonas mandelii JR-1]
Length = 493
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 126/446 (28%), Positives = 194/446 (43%), Gaps = 75/446 (16%)
Query: 6 KKSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGP 65
K PV+PW V E H L P L A+Q++G P+Q V +G
Sbjct: 82 KPKAPVIPWKLEDFAVEPQEGKTRFHDFKLAPELMHAIQDLGFPYCTPIQAQV----LGF 137
Query: 66 GLFERDLCINSPTGSGKTLSYALPIVQTL------SNRAVRCLRALVVLPTRDLALQVKD 119
L +D + TG+GKT ++ + I+ L R + RAL++ PTR+L +Q+
Sbjct: 138 TLAGKDAIGRAQTGTGKTAAFLISIITQLLETPPPKERYMGEPRALIIAPTRELVVQIAK 197
Query: 120 VFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179
A + GL+V VG ++ LEA C DILVAT
Sbjct: 198 DAADLTKYTGLNVMTFVGGMDFDKQLKH------LEARHC--------------DILVAT 237
Query: 180 PGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTF 239
PGRL+D N L+ + +V+DE DR+L + + +++ T NE +
Sbjct: 238 PGRLLD-FNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKNERQ------- 289
Query: 240 LPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET 299
++ SAT T+D LA+ P + E+
Sbjct: 290 -----------------------------TLLFSATFTEDVMNLAKQWTTDPSIVEI-ES 319
Query: 300 RYKLPERLES--YKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 357
+ E +E Y + K K LY L+ G E+ +VF + + R+ L G
Sbjct: 320 QNVASENVEQHIYAVAGADKYKLLY--NLVNDNGWERVMVFANRKDEVRRIEERLVRDG- 376
Query: 358 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417
+ + SG Q R KTL+ FREGKI+VLV++D RG+ ++G+++V+N+ P
Sbjct: 377 --VNAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEVPD 434
Query: 418 TYIHRAGRTARAGQLGRCFTLLHKDE 443
Y+HR GRT RAG G + +D+
Sbjct: 435 DYVHRIGRTGRAGAEGVSISFAGEDD 460
>gi|398862676|ref|ZP_10618268.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM78]
gi|398250215|gb|EJN35563.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM78]
Length = 496
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 137/481 (28%), Positives = 208/481 (43%), Gaps = 81/481 (16%)
Query: 6 KKSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGP 65
K PV+PW V E H L P L A+Q++G P+Q V +G
Sbjct: 84 KPKAPVIPWKLEDFVVEPQEGKTRFHDFKLAPELMHAIQDLGFPYCTPIQAQV----LGF 139
Query: 66 GLFERDLCINSPTGSGKTLSYALPIVQTL------SNRAVRCLRALVVLPTRDLALQVKD 119
L +D + TG+GKT ++ + I+ L R + RAL++ PTR+L +Q+
Sbjct: 140 TLAGKDAIGRAQTGTGKTAAFLISIITQLLQTPPPKERYMGEPRALIIAPTRELVVQIAK 199
Query: 120 VFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179
A + GL+V VG ++ LEA C DILVAT
Sbjct: 200 DAADLTKYTGLNVMTFVGGMDFDKQLKH------LEARHC--------------DILVAT 239
Query: 180 PGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTF 239
PGRL+D N L+ + +V+DE DR+L + +P V Q+ R
Sbjct: 240 PGRLLD-FNQRGDVHLDMVEVMVLDEADRMLDMGF---IPQVRQIIR------------- 282
Query: 240 LPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET 299
+ P ++ SAT T+D LA+ P + E+
Sbjct: 283 --------------------QTPPKSERQTLLFSATFTEDVMNLAKQWTTDPAIVEI-ES 321
Query: 300 RYKLPERLES--YKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 357
+ E +E Y + K K LY L+ G E+ IVF + + R+ L G
Sbjct: 322 QNVANENVEQHIYAVAGADKYKLLY--NLVTDNGWERVIVFANRKDEVRRIEERLVRDG- 378
Query: 358 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417
+ + SG Q R KTL+ FREG I+VLV++D RG+ ++G+++V+N+ P
Sbjct: 379 --VNAAQLSGDVPQHKRIKTLEGFREGHIRVLVATDVAGRGIHIDGISHVINFTLPEVPD 436
Query: 418 TYIHRAGRTARAGQLGRCFTLLHKDEVKRF----KKLLQKADNDSCPIHSIPSSLIESLR 473
Y+HR GRT RAG G + +D+ + +KL +K ++ P H + IE R
Sbjct: 437 DYVHRIGRTGRAGADGVSISFAGEDDSYQLPAIEEKLGRKISCETPPTHLL--RPIERKR 494
Query: 474 P 474
P
Sbjct: 495 P 495
>gi|344344833|ref|ZP_08775692.1| DEAD/DEAH box helicase domain protein [Marichromatium purpuratum
984]
gi|343803527|gb|EGV21434.1| DEAD/DEAH box helicase domain protein [Marichromatium purpuratum
984]
Length = 453
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 127/429 (29%), Positives = 192/429 (44%), Gaps = 74/429 (17%)
Query: 24 FEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKT 83
F D PLD P L L+ G PVQ AV + P L RDL + + TGSGKT
Sbjct: 5 FSDYPLD------PSLLRGLEQAGYEQPTPVQEAVLE----PALDGRDLMVCAATGSGKT 54
Query: 84 LSYALPIVQTL--SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSI 141
++ LP++Q + + +A RAL+++PTR+LA QV++ F I L V + G S
Sbjct: 55 AAFLLPMMQHMLETPKADGGTRALILVPTRELARQVREHFMRIGGHTRLGVDVITGGDSR 114
Query: 142 ADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYL 201
A +I+ L + P + L+ATPGR + + R L+ L +L
Sbjct: 115 AHQIATLRRNP---------------------EFLIATPGRFREMLEHGR-TELDDLEFL 152
Query: 202 VVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKD 261
V+DE DR+L + + T++ EN D + L SA T+ R G+ER
Sbjct: 153 VLDEADRMLEMGFVEDVVTII-------ENSNPDRQSLLFSA-----TLERRGLERITAL 200
Query: 262 KPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPL 321
L + + + A D+ H L+ E K
Sbjct: 201 LLDDPLALTLDAV-------REAHPDIRHQCLLSD------------------EVAHKRE 235
Query: 322 YLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 381
L LL + EK +VF +S + L L GE ++ G Q R++ +
Sbjct: 236 QLRWLLANETFEKALVFVNSRDLATELGGWLGAQGE---RVAVLHGELEQRERNRVMGLL 292
Query: 382 REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK 441
++GK++VLV++D RG+DV GV V N + P + Y+HR+GRT RAG+ G L+
Sbjct: 293 QQGKVRVLVATDLAARGIDVPGVERVFNLEVPRNGEDYLHRSGRTGRAGEQGVAVNLVGP 352
Query: 442 DEVKRFKKL 450
E R + +
Sbjct: 353 TEWNRMESI 361
>gi|407792657|ref|ZP_11139694.1| ATP-dependent RNA helicase SrmB [Idiomarina xiamenensis 10-D-4]
gi|407217770|gb|EKE87602.1| ATP-dependent RNA helicase SrmB [Idiomarina xiamenensis 10-D-4]
Length = 420
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 135/452 (29%), Positives = 203/452 (44%), Gaps = 88/452 (19%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LD RL L+ ++ VQ Q++I L D+ +++PTG+GKTL++ LP +Q +
Sbjct: 10 LDERLVGVLKQANLNKPSKVQ----QQSIPLALDGLDVMVSAPTGTGKTLAFLLPAIQHM 65
Query: 95 SNRAVR---CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
+ R R LV+ PTR+LA Q+ A A GLS L G
Sbjct: 66 LDYPRRQPGAARVLVLAPTRELAEQIATQAQAFEVATGLSCVLITG-------------- 111
Query: 152 PKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 211
GI Y + L +L+ A DI+VATPGRL+D I A + + LE + +L++DE DR+L
Sbjct: 112 -----GINYGTQ--LDQLELAHDIVVATPGRLIDLIEAEQ-YELESVEWLIIDEADRMLD 163
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDK--PYPRLVK 269
+ A V QL E R + L + S GVER F + P+ V
Sbjct: 164 MGFSA---AVQQLA---AECRQRQQAMLLSATLNS------PGVER-FAQQLLKQPKRVD 210
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLT-TGETRYKLPERLESYKLICESKLKPLYLVALLQ 328
+ DP K + +H L + T E +Y L RL +
Sbjct: 211 V--------DPPKREKGKIHQWLHIADTAEHKYALLHRLLNQH----------------- 245
Query: 329 SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 388
E + +VF + E +L L G +K G Q+ R +K ++ +
Sbjct: 246 ---EGRRVVFVRTRERASQLANQLQRDG---LKSFTLRGDMPQADRQAVVKKLKQQTDTI 299
Query: 389 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VK 445
L+++D RG+D++ V VVNYD P Y+HR GRTARAG+ G L+ + +
Sbjct: 300 LIATDVAARGLDIDDVTLVVNYDLPKQADVYLHRIGRTARAGKSGTAIALVEAHDALLLG 359
Query: 446 RFKKLLQKADNDSCPIHSIPSSLIESLRPVYK 477
R ++ L++ I +I+ LRP YK
Sbjct: 360 RIERYLKE---------KIERRIIKDLRPQYK 382
>gi|304319730|ref|YP_003853373.1| hypothetical protein PB2503_00757 [Parvularcula bermudensis
HTCC2503]
gi|303298633|gb|ADM08232.1| hypothetical protein PB2503_00757 [Parvularcula bermudensis
HTCC2503]
Length = 460
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 137/459 (29%), Positives = 210/459 (45%), Gaps = 78/459 (16%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LD ++ AL G + P+Q + I L RD+ + TG+GKT S+ LP++ L
Sbjct: 21 LDTKILEALTESGYTHPTPIQA----DAIPEALRGRDVLGIAQTGTGKTASFVLPVIHRL 76
Query: 95 SNRAVRCLR--ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
+ R +L++ PTR+LA QV + F LS+ L +G S AD+ ++L +
Sbjct: 77 ARGRARARMPRSLILAPTRELAAQVSEQFEKYGKNHKLSMALLIGGVSFADQDAKLTR-- 134
Query: 153 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLR 211
VD+L+ATPGRL+DH RG L L +VVDE DR+L
Sbjct: 135 -------------------GVDVLIATPGRLLDH--HERGKLLLTGLEVMVVDEADRMLD 173
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
+ L + +LT + F A+ +P RL
Sbjct: 174 MGFIPDLERIFKLTPFTRQTLFFSAT--MPPEI--------------------QRLTDQF 211
Query: 272 LSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLG 331
LSA A++++ P TT +T + RL S E KLK L L+++
Sbjct: 212 LSAP--------ARIEVAKPA--TTAKTITQRIARLPS----GEDKLKRAALRHLVETAE 257
Query: 332 EEK-CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 390
K I+F + ++ + L G + G QS R++TL+ FR+G +++LV
Sbjct: 258 NLKNGIIFCNRKKNVDVIAKSLQEHG---FDARPIHGDLPQSFRTETLQMFRDGGLKLLV 314
Query: 391 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
+SD RG+D+ V++V N+ P Y+HR GRT RAG+LG L+ D+ K F +
Sbjct: 315 ASDVAARGLDIPDVSHVFNFSVPINADDYVHRIGRTGRAGRLGHAVMLVTPDDGKAFDAV 374
Query: 451 LQKADNDSCPIHSIPSSLIE----SLRPVYK---SVRGG 482
L+ D H I S+L++ + RP K + RGG
Sbjct: 375 LKVTGLDKIEEHDI-SALLDDWNGAARPPEKGRNNRRGG 412
>gi|403052034|ref|ZP_10906518.1| ATP-dependent RNA helicase RhlB [Acinetobacter bereziniae LMG 1003]
gi|445418409|ref|ZP_21434896.1| DEAD/DEAH box helicase [Acinetobacter sp. WC-743]
gi|444760745|gb|ELW85181.1| DEAD/DEAH box helicase [Acinetobacter sp. WC-743]
Length = 383
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 117/415 (28%), Positives = 187/415 (45%), Gaps = 71/415 (17%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P+LK A+ +G + P+Q V + T+ D + TG+GKT ++ + I+ L
Sbjct: 10 LHPQLKQAIDALGFKEMTPIQQKVLKYTLAG----HDAIGRAQTGTGKTAAFLVSIINDL 65
Query: 95 SNRAVRCLR------ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
N ++ R AL++ PTR+LA+Q+++ + GL+V VG
Sbjct: 66 LNNPIQTQRFRGEPRALILAPTRELAIQIENDAKDLVKYSGLNVVTLVG----------- 114
Query: 149 IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208
G+ +D + Q Q VDILVATPGRL+D + L+ + +LV+DE DR
Sbjct: 115 --------GVDFDKQRK-QLDQGFVDILVATPGRLID-FTEQKEIWLDQIEFLVIDEADR 164
Query: 209 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLV 268
LL ++P+V ++ R F K R+
Sbjct: 165 LLD---MGFIPSVKRIVR-----------------FSPRKEQRQT--------------- 189
Query: 269 KMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ 328
++ SAT + D LAQ L P+ + E K +E + E K K L +L
Sbjct: 190 -LMFSATFSYDVLNLAQQWLFEPVTVEI-EPEKKTNADVEQRVYVVEKKDKYKLLREILT 247
Query: 329 SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 388
EK ++F + + +L +H K+ SG Q R K L F+ GK +
Sbjct: 248 DEPIEKVMIFANRRDQVRKLY---DHLKADGYKVVMLSGEIAQDKRLKMLDQFKNGKHNI 304
Query: 389 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443
++++D RG+ V+GV++V+N+ P Y+HR GRT RAG G + L +D+
Sbjct: 305 MIATDVAGRGIHVDGVSHVINFTLPEQSDDYVHRIGRTGRAGTQGVSISFLSEDD 359
>gi|323453625|gb|EGB09496.1| hypothetical protein AURANDRAFT_10388, partial [Aureococcus
anophagefferens]
Length = 589
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 122/410 (29%), Positives = 197/410 (48%), Gaps = 53/410 (12%)
Query: 39 LKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR- 97
L +A+++ G P+Q ++ I GL RD+ + TGSGKT ++ +P+++ +S
Sbjct: 187 LLMAIRDAGYKEPSPIQ----RQAIPVGLELRDIIGVAETGSGKTAAFCIPMIRYISKLP 242
Query: 98 AVRCLR-------ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIK 150
A R ALV+ PTR+LA Q+ + + ++V VG SI D+
Sbjct: 243 AARIASLADDGPLALVMAPTRELATQIAGECKKLTAHMDMNVTTVVGGMSIEDQAF---- 298
Query: 151 RPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 210
VL+E V+I+V TPGR+ D ++ T+ L Y+V+DE DR++
Sbjct: 299 --------------VLRE---GVEIIVGTPGRIQDCLD-TQYLVLNQANYVVLDEADRMI 340
Query: 211 REAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270
++ + ++L+ + L S +R V+RG + R+ M
Sbjct: 341 DMGFEPQVHSILE-----------EMGGLLLSEDDIEMEQQRLAVQRG---EACYRITAM 386
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKL-ICESKLKPLYLVALLQS 329
SAT+ KLA+ L HP + G+ +R+ + L I E+ K + L +
Sbjct: 387 -FSATMPSAVEKLAKKFLRHPAIVCIGDEDSGKNKRIAQHVLYIAEAAKKNAVVDILRKK 445
Query: 330 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 389
++K +VF + + L +L+ G LR + G + Q R TL A++ G + VL
Sbjct: 446 KAQDKYLVFCNEKKGCDALAKVLSTAG-LRSSV--LHGGKTQEHRDATLAAYKAGSVTVL 502
Query: 390 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439
V++D RG+D+ V +VVNYD P I+ Y HR GRT RAG+ G TLL
Sbjct: 503 VATDVAGRGLDIPDVAHVVNYDMPLKIENYSHRIGRTGRAGKDGVATTLL 552
>gi|404320397|ref|ZP_10968330.1| DEAD/DEAH box helicase [Ochrobactrum anthropi CTS-325]
Length = 484
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 121/425 (28%), Positives = 194/425 (45%), Gaps = 90/425 (21%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P++ A++ G S+ P+Q I P L +D+ + TG+GKT S+ LP++ L
Sbjct: 9 LSPKVLAAVEAAGYSAPTPIQAGA----IPPALERKDVLGIAQTGTGKTASFVLPMLTLL 64
Query: 95 S-NRA-VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
RA R R L++ PTR+LA QV++ F L+V L +G
Sbjct: 65 EKGRARARMPRTLILEPTRELAAQVEENFTKYGVNHRLNVALLIG--------------- 109
Query: 153 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLR 211
G+ +D ++ ++L+ D+L+ATPGRL+DH RG L + LV+DE DR+L
Sbjct: 110 ----GVSFDEQE--RKLERGADVLIATPGRLLDHFE--RGKLLLTGVEILVIDEADRMLD 161
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
F+P +ER K P+ R +
Sbjct: 162 MG-------------------------FIPD------------IERICKLIPFTRQT-LF 183
Query: 272 LSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP--------LYL 323
SAT+ + KL + LH P TR ++ + + K + + +K L
Sbjct: 184 FSATMPPEITKLTEQFLHSP-------TRVEVAKASSTAKTVTQRLVKSSKKDWDKRAVL 236
Query: 324 VALLQSLGE--EKCIVFTSSVESTHRLC-TLLNHFGELRIKIKEYSGLQRQSVRSKTLKA 380
L+++ G+ + I+F + + L +L H G Q R L
Sbjct: 237 RDLVRAEGDTLKNAIIFCNRKKDVSELFRSLTRH----EFNAGALHGDMDQRARMTMLAN 292
Query: 381 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 440
F+EGK+Q+LV+SD RG+D+ V++V N+D P + + Y+HR GRT RAG+ G+ FT++
Sbjct: 293 FKEGKLQLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGKAFTIVT 352
Query: 441 KDEVK 445
+ K
Sbjct: 353 PSDTK 357
>gi|356520440|ref|XP_003528870.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 13-like [Glycine
max]
Length = 810
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 126/466 (27%), Positives = 205/466 (43%), Gaps = 79/466 (16%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P L A+ +G P+Q A G +D+ + TGSGKTL++ LPI+Q L
Sbjct: 182 LHPLLLKAICKLGFKEPTPIQKACIPAAAHQG---KDVVGAAETGSGKTLAFGLPILQRL 238
Query: 95 SNRAVRC-------------------LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLA 135
+ LRAL++ PTR+LALQV D A+A + + V
Sbjct: 239 LEEREKAGNMVGERGEEPEKYASTGLLRALIIAPTRELALQVTDHLKAVAKHINVRVTPI 298
Query: 136 VGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTL 195
VG GI + ++ L L++ +I+V TPGRL + ++A +
Sbjct: 299 VG-------------------GILAEKQERL--LKAKPEIVVGTPGRLWELMSAGEKHLV 337
Query: 196 E--HLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS---------------- 237
E L + V+DE DR+++ + L +++ + N N D S
Sbjct: 338 ELHSLSFFVLDEADRMVQNGHFKELQSIIDMLPMSN-NSAEDNSQHVQSCVTVSSYQRKK 396
Query: 238 --TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP---NKLAQLDLHHPL 292
T + SA +L + R ++RG + + TL++ + A +DL +P
Sbjct: 397 RQTLVFSATVALSSDFRKKLKRGSIKQKQSLTDGLNSIETLSERAGMRSNAAIIDLTNPS 456
Query: 293 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352
L T +LE + C + K YL +L G+ + IVF +S+ + + ++L
Sbjct: 457 ILAT---------KLEESFIECREEDKDAYLYYILTVHGQGRTIVFCTSIAALRHISSIL 507
Query: 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 412
G I + +Q R K + FRE + +LV++D RG+D+ GV VV+Y
Sbjct: 508 RILG---INVWTLHAQMQQRARLKAMDRFRENENGILVATDVAARGLDIPGVRTVVHYQL 564
Query: 413 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDS 458
P + Y+HR+GRTARA G L+ + +F L + D+
Sbjct: 565 PHSAEVYVHRSGRTARASAEGCSIALISSRDTSKFASLCKSFSKDN 610
>gi|262401641|ref|ZP_06078207.1| ATP-dependent RNA helicase SrmB [Vibrio sp. RC586]
gi|262352058|gb|EEZ01188.1| ATP-dependent RNA helicase SrmB [Vibrio sp. RC586]
Length = 416
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 128/415 (30%), Positives = 196/415 (47%), Gaps = 82/415 (19%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LDP L A++ MG S P QV E I L RD+ ++PTG+GKT ++A+P +Q L
Sbjct: 10 LDPILLEAIEEMGFSR--PTQVQA--EAIPQALDGRDVLASAPTGTGKTAAFAIPALQYL 65
Query: 95 SN---RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
+ R R L++ PTR+LA+QV + A+A L++ G
Sbjct: 66 LDFPRRKPGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITG-------------- 111
Query: 152 PKLEAGICY-DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 210
G+ Y + D+L Q DI+VATPGRL+++I+A R F + +L++DE DR+L
Sbjct: 112 -----GVQYQEHADILATTQ---DIVVATPGRLLEYIDAER-FDCRAIEWLILDEADRML 162
Query: 211 REAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270
+ PTV +L+ E R+ T L SA T+ GVE GF
Sbjct: 163 DMGFG---PTVDRLS---TECRWR-KQTLLFSA-----TLEGRGVE-GF----------- 198
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRY-----KLPERLESYKLICESKLKPLYLVA 325
+A L +DP A +D P +++ +P ++E K I +
Sbjct: 199 --TADLLKDP---AHVDAEPPRRERKKISQWYHRADDMPHKVELLKKILTEQ-------- 245
Query: 326 LLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 385
E+ IVF + E RL L + +I G Q R+ + FREG
Sbjct: 246 ------AERSIVFLKTRE---RLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGD 296
Query: 386 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 440
+ +L+++D RG+DV +++V+N+D P Y+HR GRT RAG+ G +L+
Sbjct: 297 VNILLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVE 351
>gi|422909174|ref|ZP_16943826.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HE-09]
gi|424658529|ref|ZP_18095786.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HE-16]
gi|341635764|gb|EGS60470.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HE-09]
gi|408055013|gb|EKG89967.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HE-16]
Length = 423
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 127/415 (30%), Positives = 196/415 (47%), Gaps = 82/415 (19%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LDP L A++ MG S P QV E I L RD+ ++PTG+GKT ++ +P +Q L
Sbjct: 10 LDPILLEAIEEMGFSR--PTQVQA--EAIPQALDGRDVLASAPTGTGKTAAFVIPALQYL 65
Query: 95 SN---RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
+ R R L++ PTR+LA+QV + A+A L++ G
Sbjct: 66 LDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITG-------------- 111
Query: 152 PKLEAGICY-DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 210
G+ Y + D+L Q DI+VATPGRL+++I+A R F + +L++DE DR+L
Sbjct: 112 -----GVQYQEHADILATTQ---DIVVATPGRLLEYIDAER-FDCRAIEWLILDEADRML 162
Query: 211 REAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270
+ PTV +L+ E R+ T L SA T+ GVE GF
Sbjct: 163 DMGFG---PTVDRLS---TECRWR-KQTLLFSA-----TLEGRGVE-GF----------- 198
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRY-----KLPERLESYKLICESKLKPLYLVA 325
+A L +DP A +D P +++ +P ++E K I +
Sbjct: 199 --TADLLKDP---AHIDAEPPRRERKKISQWYHRADDMPHKVELLKKILTEQ-------- 245
Query: 326 LLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 385
E+ IVF + E RL L + + +I G Q R+ + FREG
Sbjct: 246 ------AERSIVFLKTRE---RLADLRSELEKAQIPCAWIQGEMPQDRRNNAISRFREGD 296
Query: 386 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 440
+ +L+++D RG+DV +++V+N+D P Y+HR GRT RAG+ G +L+
Sbjct: 297 VNILLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVE 351
>gi|153009579|ref|YP_001370794.1| DEAD/DEAH box helicase [Ochrobactrum anthropi ATCC 49188]
gi|151561467|gb|ABS14965.1| DEAD/DEAH box helicase domain protein [Ochrobactrum anthropi ATCC
49188]
Length = 498
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 121/420 (28%), Positives = 193/420 (45%), Gaps = 80/420 (19%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P++ A++ G S+ P+Q I P L +D+ + TG+GKT S+ LP++ L
Sbjct: 23 LSPKVLAAVEAAGYSAPTPIQAGA----IPPALERKDVLGIAQTGTGKTASFVLPMLTLL 78
Query: 95 S-NRA-VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
RA R R L++ PTR+LA QV++ F L+V L +G
Sbjct: 79 EKGRARARMPRTLILEPTRELAAQVEENFTKYGVNHRLNVALLIG--------------- 123
Query: 153 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLR 211
G+ +D ++ ++L+ D+L+ATPGRL+DH RG L + LV+DE DR+L
Sbjct: 124 ----GVSFDEQE--RKLERGADVLIATPGRLLDHFE--RGKLLLTGVEILVIDEADRMLD 175
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
F+P +ER K P+ R +
Sbjct: 176 MG-------------------------FIPD------------IERICKLIPFTRQT-LF 197
Query: 272 LSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL---KPLYLVALLQ 328
SAT+ + KL + LH P + + + + +L+ SK K L L++
Sbjct: 198 FSATMPPEITKLTEQFLHSPTRVEVAKASST--AKTVTQRLVKSSKKDWDKRAVLRDLVR 255
Query: 329 SLGE--EKCIVFTSSVESTHRLC-TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 385
+ G+ + I+F + + L +L H G Q R L F+EGK
Sbjct: 256 AEGDTLKNAIIFCNRKKDVSELFRSLTRH----EFNAGALHGDMDQRARMTMLANFKEGK 311
Query: 386 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 445
+Q+LV+SD RG+D+ V++V N+D P + + Y+HR GRT RAG+ G+ FT++ + K
Sbjct: 312 LQLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGKAFTIVTPSDTK 371
>gi|229520951|ref|ZP_04410373.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae TM 11079-80]
gi|229342184|gb|EEO07180.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae TM 11079-80]
Length = 423
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 127/415 (30%), Positives = 195/415 (46%), Gaps = 82/415 (19%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LDP L A++ MG S P QV E I L RD+ ++PTG+GKT ++ +P +Q L
Sbjct: 10 LDPILLEAIEEMGFSR--PTQVQA--EAIPQALDGRDVLASAPTGTGKTAAFVIPALQYL 65
Query: 95 SN---RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
+ R R L++ PTR+LA+QV + A+A L++ G
Sbjct: 66 LDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITG-------------- 111
Query: 152 PKLEAGICY-DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 210
G+ Y + D+L Q DI+VATPGRL+++I+A R F + +L++DE DR+L
Sbjct: 112 -----GVQYQEHADILATTQ---DIVVATPGRLLEYIDAER-FDCRAIEWLILDEADRML 162
Query: 211 REAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270
+ PTV +L+ E R+ T L SA T+ GVE GF
Sbjct: 163 DMGFG---PTVDRLS---TECRWR-KQTLLFSA-----TLEGRGVE-GF----------- 198
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRY-----KLPERLESYKLICESKLKPLYLVA 325
+A L +DP A +D P +++ +P ++E K I +
Sbjct: 199 --TADLLKDP---AHVDAESPRRERKKISQWYHRADDMPHKVELLKKILTEQ-------- 245
Query: 326 LLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 385
E+ IVF + E RL L + +I G Q R+ + FREG
Sbjct: 246 ------AERSIVFLKTRE---RLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGD 296
Query: 386 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 440
+ +L+++D RG+DV +++V+N+D P Y+HR GRT RAG+ G +L+
Sbjct: 297 VNILLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVE 351
>gi|418299490|ref|ZP_12911323.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens CCNWGS0286]
gi|355534955|gb|EHH04251.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens CCNWGS0286]
Length = 501
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 120/417 (28%), Positives = 191/417 (45%), Gaps = 88/417 (21%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-NRA-V 99
A+ + G ++ P+Q I P L +RD+C + TG+GKT S+ LP++ L RA
Sbjct: 16 AIADAGYTTPTPIQAGA----IPPALEKRDICGIAQTGTGKTASFVLPMLTLLEKGRARA 71
Query: 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 159
R R L++ PTR+LA QV + F L+V L +G G+
Sbjct: 72 RMPRTLILEPTRELAAQVAENFEKYGKNHKLNVALLIG-------------------GVS 112
Query: 160 YDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWL 218
++ +D ++L+ D+L+ TPGRL+DH RG + + LV+DE DR+L
Sbjct: 113 FEDQD--RKLERGADVLICTPGRLLDHCE--RGKLLMTGVEILVIDEADRMLDMG----- 163
Query: 219 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ 278
F+P +ER K P+ R + SAT+
Sbjct: 164 --------------------FIPD------------IERIAKMIPFTRQT-LFFSATMPP 190
Query: 279 DPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE----SKLKPLYLVALLQSL--GE 332
+ KLA L +P TR ++ + + K + + + K A+L+ L E
Sbjct: 191 EIQKLADRFLQNP-------TRIEVAKPSSTAKTVTQRIVAAHNKDYEKRAVLRDLVRAE 243
Query: 333 E----KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 388
E I+F + + L L+ G + G Q R+ L+ FR+G + +
Sbjct: 244 EAELKNAIIFCNRKKDVADLFRSLDRHG---FSVGALHGDMDQRSRTTMLQNFRDGNLSL 300
Query: 389 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 445
LV+SD RG+D+ V++V N+D P + + Y+HR GRT RAG+ G+ FTL+ K + K
Sbjct: 301 LVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTLVTKSDAK 357
>gi|358347102|ref|XP_003637601.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355503536|gb|AES84739.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 781
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 120/427 (28%), Positives = 198/427 (46%), Gaps = 58/427 (13%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS------ 95
A++ G + P+Q+A I GL +RD+ + TGSGKT ++ LP++ ++
Sbjct: 300 AVEKAGYKTPSPIQMAA----IPLGLQQRDVIGVAETGSGKTAAFVLPMLSYITRLPPIS 355
Query: 96 -NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
A+V+ PTR+LA Q++D A +G+ V VG SI
Sbjct: 356 EENEAEGPYAVVMAPTRELAQQIEDETVKFAQYMGIKVVSIVGGQSIE------------ 403
Query: 155 EAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY 214
E G +++ +I++ATPGRL+D + R L Y+V+DE DR++ +
Sbjct: 404 EQGF---------KIRQGCEIVIATPGRLIDCLE-RRYAVLNQCNYVVLDEADRMIDMGF 453
Query: 215 QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274
+ + VL DA +PS+ ++ + +K R M SA
Sbjct: 454 EPQVMGVL------------DA---MPSS-----NLKPENEDEELDEKRIYRTTYM-FSA 492
Query: 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEK 334
T+ +LA+ L +P+ +T G T K + + + ++ + K L LL L ++
Sbjct: 493 TMPPAVERLARKYLRNPVVVTIG-TAGKATDLISQHVIMMKESEKNYKLQRLLDELNDKT 551
Query: 335 CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394
IVF ++ +S L L+ G ++ G + Q R +L+ FR + VLV++D
Sbjct: 552 AIVFVNTKKSADFLAKNLDKEG---YRVTTLHGGKSQDQREISLEGFRTKRYNVLVATDV 608
Query: 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 454
RG+D+ V +V+NYD P I+ Y HR GRT RAG+ G T L + F +L Q
Sbjct: 609 AGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLQDTDVFYELKQML 668
Query: 455 DNDSCPI 461
+ P+
Sbjct: 669 IQSNSPV 675
>gi|145300503|ref|YP_001143344.1| ATP-dependent RNA helicase SrmB [Aeromonas salmonicida subsp.
salmonicida A449]
gi|418362888|ref|ZP_12963506.1| ATP-dependent RNA helicase SrmB [Aeromonas salmonicida subsp.
salmonicida 01-B526]
gi|142853275|gb|ABO91596.1| ATP-dependent RNA helicase SrmB [Aeromonas salmonicida subsp.
salmonicida A449]
gi|356685894|gb|EHI50513.1| ATP-dependent RNA helicase SrmB [Aeromonas salmonicida subsp.
salmonicida 01-B526]
Length = 407
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 125/450 (27%), Positives = 194/450 (43%), Gaps = 77/450 (17%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P L AL MG + +Q Q + P L RD+ ++PTG+GKT ++ LP +Q L
Sbjct: 10 LHPALNRALAEMGFTRPTTIQ----QMVLEPALDGRDILASAPTGTGKTAAFVLPALQHL 65
Query: 95 SN---RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
+ R R L++ PTR+LALQV A+A LS+ +G
Sbjct: 66 LDFPRRKPGPCRMLILTPTRELALQVTAHAKALAVHTNLSIETIIG-------------- 111
Query: 152 PKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 211
G+ + E+ L L DI+VATPGRL+++I+ F + LV+DE DR+L
Sbjct: 112 -----GVSH--EEQLPALTKTTDIVVATPGRLLEYIDKEE-FESHDIEVLVLDEADRMLD 163
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
G +K + R E ++ M+
Sbjct: 164 --------------------------------MGFVKDVNRIVAEARYRKH------TML 185
Query: 272 LSATLT-QDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL 330
SATL K A L+ P+ L R + + L ++ K L+ +L+
Sbjct: 186 FSATLEGAGLEKFANEILNEPVELHAEPPRSERRPITQWVHLADDAAHKLALLIHILKDP 245
Query: 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 390
+K IVF V + RL L I G QS R ++++ F G++ LV
Sbjct: 246 ETQKAIVF---VRTRERLAELSGQLQAAGIPCAWIRGEMEQSKRVESIRKFHAGEVPFLV 302
Query: 391 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
++D RG+D+ V++V+NYD P Y+HR GRT RAG G +L+ ++ K+
Sbjct: 303 ATDVAARGIDLPNVSHVINYDMPYGTDVYVHRIGRTGRAGNRGCAISLVEAHDMGMVAKI 362
Query: 451 LQKADNDSCPIHSIPSSLIESLRPVYKSVR 480
+ + + +I+ LRP +K R
Sbjct: 363 ERYTEE------RLKRRVIDELRPKHKEAR 386
>gi|294875674|ref|XP_002767430.1| ATP-dependent RNA helicase dbp10, putative [Perkinsus marinus ATCC
50983]
gi|239868997|gb|EER00148.1| ATP-dependent RNA helicase dbp10, putative [Perkinsus marinus ATCC
50983]
Length = 952
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 121/434 (27%), Positives = 187/434 (43%), Gaps = 92/434 (21%)
Query: 36 DPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 95
DP K A+Q MG + P+Q +G D+ + TGSGKT ++ +P++QTL
Sbjct: 32 DPLFK-AIQKMGYNQPTPIQRKAIPVILGGS----DVVAMARTGSGKTAAFVIPMIQTLK 86
Query: 96 NRA-VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
+ V RA+++ PTR+LA+Q V + L + L VG S+ + L P
Sbjct: 87 GHSEVVGARAVILSPTRELAMQTIKVTRMLGKFTDLRLCLIVGGHSMESQFDRLSSNP-- 144
Query: 155 EAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY 214
D+L+ TPGRL+ H+ +L+ + Y+V DE DRL +
Sbjct: 145 -------------------DVLICTPGRLVHHM-VEADLSLQRVQYIVFDEADRLFEMGF 184
Query: 215 QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274
+ T+L+ T + A+ LPS L R G
Sbjct: 185 SDDMQTILKATPPSRQCLLFSAT--LPS---QLTQFSRAG-------------------- 219
Query: 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL---QSLG 331
L D + +LD+ H + T L+ + L + KP L++LL QS+G
Sbjct: 220 -LRSDSTEFIRLDVEHTISDT-----------LDLWFLYTTADSKPAALISLLRKLQSMG 267
Query: 332 EE---------------------KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQR 370
K IVF ++ + +LL G I G
Sbjct: 268 NANADSSTAVVAAGKGGKKARSPKTIVFVATRHNVEFFASLLTQVG---ITNAPIYGSMD 324
Query: 371 QSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG 430
Q+ R+ +L FR GK VL+ +D RG+D+ ++ V+NYD P+ K ++HR GRTARAG
Sbjct: 325 QTQRTSSLSKFRSGKASVLLVTDVAARGIDIPQLDYVINYDFPSSSKLFVHRCGRTARAG 384
Query: 431 QLGRCFTLLHKDEV 444
G C +L+ D++
Sbjct: 385 AKGLCASLVTHDDM 398
>gi|239831816|ref|ZP_04680145.1| ATP-dependent RNA helicase dbp2 [Ochrobactrum intermedium LMG 3301]
gi|239824083|gb|EEQ95651.1| ATP-dependent RNA helicase dbp2 [Ochrobactrum intermedium LMG 3301]
Length = 484
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 121/425 (28%), Positives = 194/425 (45%), Gaps = 90/425 (21%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P++ A++ G ++ P+Q I P L +D+ + TG+GKT S+ LP++ L
Sbjct: 9 LSPKVLAAVEAAGYTAPTPIQAGA----IPPALERKDVLGIAQTGTGKTASFVLPMLTLL 64
Query: 95 S-NRA-VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
RA R R L++ PTR+LA QV++ FA L+V L +G
Sbjct: 65 EKGRARARMPRTLILEPTRELAAQVEENFAKYGINQRLNVALLIG--------------- 109
Query: 153 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLR 211
G+ +D D ++L+ D+L+ATPGRL+DH RG L + LV+DE DR+L
Sbjct: 110 ----GVSFD--DQERKLERGADVLIATPGRLLDHFE--RGKLLLTGVEILVIDEADRMLD 161
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
F+P +ER K P+ R +
Sbjct: 162 MG-------------------------FIPD------------IERICKLIPFTRQT-LF 183
Query: 272 LSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPL--------YL 323
SAT+ + KL + LH P TR ++ + + K + + +K L
Sbjct: 184 FSATMPPEITKLTEQFLHSP-------TRVEVAKASSTAKTVTQRLVKSTKKDWDKRAVL 236
Query: 324 VALLQSLGE--EKCIVFTSSVESTHRLC-TLLNHFGELRIKIKEYSGLQRQSVRSKTLKA 380
L+++ G+ + I+F + + L +L H G Q R L
Sbjct: 237 RDLIRAEGDTLKNAIIFCNRKKDVSELFRSLTRH----EFNAGALHGDMDQRARMTMLSN 292
Query: 381 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 440
F++GK+Q+LV+SD RG+D+ V++V N+D P + + Y+HR GRT RAG+ G+ FT++
Sbjct: 293 FKDGKLQLLVASDVAARGLDIPDVSHVFNFDIPIHSEDYVHRIGRTGRAGRSGKAFTIVT 352
Query: 441 KDEVK 445
+ K
Sbjct: 353 PSDTK 357
>gi|126736040|ref|ZP_01751784.1| ATP-dependent RNA helicase, putative [Roseobacter sp. CCS2]
gi|126714597|gb|EBA11464.1| ATP-dependent RNA helicase, putative [Roseobacter sp. CCS2]
Length = 484
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 122/421 (28%), Positives = 191/421 (45%), Gaps = 80/421 (19%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P++ A+ G + P+Q I P L RD+ + TG+GKT ++ LP++ L
Sbjct: 9 LAPKVLKAVTETGYDTPTPIQAGA----IAPALEGRDVLGIAQTGTGKTAAFTLPMITLL 64
Query: 95 S-NRA-VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
RA R R+LV+ PTR+LA QV + F A A LS L +G +S D+ ++I +
Sbjct: 65 GRGRARARMPRSLVLAPTRELAAQVAENFDAYAKYTKLSRALLIGGTSFKDQ-DKIIDK- 122
Query: 153 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLR 211
VD+L+ATPGRL+DH+ RG L + +VVDE DR+L
Sbjct: 123 -------------------GVDVLIATPGRLLDHLE--RGKLILTDVKIMVVDEADRMLD 161
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
F+P +E FK P+ R +
Sbjct: 162 MG-------------------------FIPD------------IEEIFKRTPFTRQT-LF 183
Query: 272 LSATLTQDPNKLAQLDLHHPLFLTTGE---TRYKLPERLESYKLICESKL---KPLYLVA 325
SAT+ + ++ L +P + T + + + +K + K K L
Sbjct: 184 FSATMAPEIERITNTFLSNPAKIEVARAATTNTNIKQGVVMFKGSAKPKEPSEKRELLRK 243
Query: 326 LLQSLGEE--KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 383
L+ + GE I+F + + LN +G I G QS R+KTL FR+
Sbjct: 244 LIDAEGEACTNAIIFCNRKSDVDIVAKSLNKYGYQAAPI---HGDLDQSHRTKTLDKFRD 300
Query: 384 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL-LHKD 442
++++LV+SD RG+D+ V +V N+D P++ + Y+HR GRT RAG+ G + + +D
Sbjct: 301 NELRILVASDVAARGLDIPAVTHVFNFDVPSHAEDYVHRIGRTGRAGRSGTAIMICVPRD 360
Query: 443 E 443
E
Sbjct: 361 E 361
>gi|444311371|ref|ZP_21146981.1| DEAD/DEAH box helicase [Ochrobactrum intermedium M86]
gi|443485287|gb|ELT48079.1| DEAD/DEAH box helicase [Ochrobactrum intermedium M86]
Length = 484
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 121/425 (28%), Positives = 194/425 (45%), Gaps = 90/425 (21%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P++ A++ G ++ P+Q I P L +D+ + TG+GKT S+ LP++ L
Sbjct: 9 LSPKVLAAVEAAGYTAPTPIQAGA----IPPALERKDVLGIAQTGTGKTASFVLPMLTLL 64
Query: 95 S-NRA-VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
RA R R L++ PTR+LA QV++ FA L+V L +G
Sbjct: 65 EKGRARARMPRTLILEPTRELAAQVEENFAKYGINQRLNVALLIG--------------- 109
Query: 153 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLR 211
G+ +D D ++L+ D+L+ATPGRL+DH RG L + LV+DE DR+L
Sbjct: 110 ----GVSFD--DQERKLERGADVLIATPGRLLDHFE--RGKLLLTGVEILVIDEADRMLD 161
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
F+P +ER K P+ R +
Sbjct: 162 MG-------------------------FIPD------------IERICKLIPFTRQT-LF 183
Query: 272 LSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPL--------YL 323
SAT+ + KL + LH P TR ++ + + K + + +K L
Sbjct: 184 FSATMPPEITKLTEQFLHSP-------TRVEVAKASSTAKTVTQRLVKSTKKDWDKRAVL 236
Query: 324 VALLQSLGE--EKCIVFTSSVESTHRLC-TLLNHFGELRIKIKEYSGLQRQSVRSKTLKA 380
L+++ G+ + I+F + + L +L H G Q R L
Sbjct: 237 RDLIRAEGDTLKNAIIFCNRKKDVSELFRSLTRH----EFNAGALHGDMDQRARMTMLSN 292
Query: 381 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 440
F++GK+Q+LV+SD RG+D+ V++V N+D P + + Y+HR GRT RAG+ G+ FT++
Sbjct: 293 FKDGKLQLLVASDVAARGLDIPDVSHVFNFDIPIHSEDYVHRIGRTGRAGRSGKAFTIVT 352
Query: 441 KDEVK 445
+ K
Sbjct: 353 PSDTK 357
>gi|15889136|ref|NP_354817.1| ATP-dependent RNA helicase [Agrobacterium fabrum str. C58]
gi|335036272|ref|ZP_08529599.1| ATP-dependent RNA helicase [Agrobacterium sp. ATCC 31749]
gi|15156946|gb|AAK87602.1| ATP-dependent RNA helicase [Agrobacterium fabrum str. C58]
gi|333792163|gb|EGL63533.1| ATP-dependent RNA helicase [Agrobacterium sp. ATCC 31749]
Length = 503
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 120/417 (28%), Positives = 192/417 (46%), Gaps = 88/417 (21%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-NRA-V 99
A+ + G ++ P+Q I P L +RD+C + TG+GKT S+ LP++ L RA
Sbjct: 16 AIADAGYTTPTPIQAGA----IPPALEKRDICGIAQTGTGKTASFVLPMLTLLEKGRARA 71
Query: 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 159
R R L++ PTR+LA QV + F L+V L +G G+
Sbjct: 72 RMPRTLILEPTRELAAQVAENFEKYGKNHKLNVALLIG-------------------GVS 112
Query: 160 YDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWL 218
++ +D ++L+ D+L+ TPGRL+DH RG + + LV+DE DR+L
Sbjct: 113 FEDQD--RKLERGADVLICTPGRLLDHCE--RGKLLMTGVEILVIDEADRMLDMG----- 163
Query: 219 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ 278
F+P +ER K P+ R + SAT+
Sbjct: 164 --------------------FIPD------------IERIAKMIPFTRQT-LFFSATMPP 190
Query: 279 DPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE----SKLKPLYLVALLQSL--GE 332
+ KLA L +P TR ++ + + K + + + K A+L+ L E
Sbjct: 191 EIQKLADRFLQNP-------TRIEVAKPSSTAKTVTQRIVAAHNKDYEKRAVLRDLVRAE 243
Query: 333 E----KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 388
E I+F + + L L+ G + G Q R+ L+ FR+G++ +
Sbjct: 244 EAELKNAIIFCNRKKDVADLFRSLDRHG---FSVGALHGDMDQRSRTTMLQNFRDGQLTL 300
Query: 389 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 445
LV+SD RG+D+ V++V N+D P + + Y+HR GRT RAG+ G+ FTL+ K + K
Sbjct: 301 LVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTLVTKSDAK 357
>gi|163789554|ref|ZP_02183992.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Carnobacterium sp. AT7]
gi|159875086|gb|EDP69152.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Carnobacterium sp. AT7]
Length = 483
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 112/420 (26%), Positives = 196/420 (46%), Gaps = 66/420 (15%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117
V +E I L +D+ + S TGSGKT+SY +P+ +T+ + + LV++PTR+LA+QV
Sbjct: 31 VQEEVIPLALEGKDVIVESQTGSGKTVSYGVPLCETVDWEENKP-QVLVLVPTRELAIQV 89
Query: 118 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177
K+ I + G++S + SEL ++ I+V
Sbjct: 90 KEDLMNIGRLKRVKATAVYGKASFDTQKSELKQKSH---------------------IVV 128
Query: 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 237
TPGR++DH+ F +E + LV+DE D +L + + ++
Sbjct: 129 GTPGRVLDHLQKGT-FKVEKIDCLVLDEADEMLNMGFADQVEAII--------------- 172
Query: 238 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 297
FLP+ +L P+ ++ + S + QD + + T
Sbjct: 173 NFLPAERQTL-----------LFSATMPKEIERIASFYMKQD---------KQSIVIET- 211
Query: 298 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 357
T P+ ++S + E K K L+ LL + C++F ++ E+ + L T LN G
Sbjct: 212 -TELSKPKIIQSSVKVQEDK-KEQQLLDLLTVENADSCMIFCNTQEAVNNLYTFLNKAG- 268
Query: 358 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417
+ I + G Q R + FR+G+ + LV++D RG+D+E V +VVN+D P +
Sbjct: 269 --LPIDKIHGGMVQEDRFSVMDDFRQGRFRYLVATDVAARGIDIENVTHVVNFDVPVEKE 326
Query: 418 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSS-LIESLRPVY 476
+++HR GRT RAG+ G TL+ E K + ++ A + S+P++ L++S + +
Sbjct: 327 SFVHRTGRTGRAGKTGMALTLVTPKEEKWWNEVKAYAGQTVIEV-SLPTTRLVQSHKTSF 385
>gi|126740399|ref|ZP_01756087.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. SK209-2-6]
gi|126718535|gb|EBA15249.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. SK209-2-6]
Length = 506
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 119/415 (28%), Positives = 186/415 (44%), Gaps = 79/415 (19%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+P++ A+ G + P+Q I P L RD+ + TG+GKT S+ LP++ L
Sbjct: 43 LNPKVLKAIYEAGYETPTPIQAGA----IPPALEGRDVLGIAQTGTGKTASFTLPMITLL 98
Query: 95 S-NRA-VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
+ RA R R+LV+ PTR+LA QV + F + L+ L +G
Sbjct: 99 ARGRARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIG--------------- 143
Query: 153 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLR 211
G+ + +D L + VD+L+ATPGRL+DH RG L + +VVDE DR+L
Sbjct: 144 ----GVSFKEQDQL--IDKGVDVLIATPGRLLDHFE--RGKLLLTGVQIMVVDEADRMLD 195
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
F+P +ER F P+ R +
Sbjct: 196 MG-------------------------FIPD------------IERIFSLTPFTRQT-LF 217
Query: 272 LSATLTQDPNKLAQLDLHHPLFL------TTGETRYKLPERLESYKLICESKLKPLYLVA 325
SAT+ + ++ L P + TT E + ++ + E K L
Sbjct: 218 FSATMAPEIERITNTFLSAPERVEVARQATTSENIEQSVVMFKASRKDREGSEKRRVLRT 277
Query: 326 LLQSLGEE--KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 383
L++ G++ I+F + + L +G G QS R+KTL FR+
Sbjct: 278 LIEQEGDKLTNGIIFCNRKTDVDIVAKSLKKYG---FDAAPIHGDLDQSQRTKTLDGFRD 334
Query: 384 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 438
G +++LV+SD RG+DV V++V N+D P + + Y+HR GRT RAG+ G+ T+
Sbjct: 335 GSLRILVASDVAARGLDVPSVSHVFNFDVPGHAEDYVHRIGRTGRAGRDGKAITI 389
>gi|421075784|ref|ZP_15536790.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans JBW45]
gi|392526099|gb|EIW49219.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans JBW45]
Length = 447
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 110/373 (29%), Positives = 173/373 (46%), Gaps = 71/373 (19%)
Query: 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129
+D+ S TG+GKTL++ LPI++ + + ++AL++ PTR+LALQ+ A +A +G
Sbjct: 41 KDVVGQSQTGTGKTLAFILPILEKIEI-SKPIVQALIITPTRELALQITREVAKLADQLG 99
Query: 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV---LQELQSAVDILVATPGRLMDH 186
+ V L+V Y +DV +++L+ I++ TPGRLMDH
Sbjct: 100 IQV-LSV-----------------------YGGQDVDRQIKKLKGGAQIVIGTPGRLMDH 135
Query: 187 INATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS 246
+ LE++ LV+DE D++L + +L V +L R + R +
Sbjct: 136 LR-RETIQLENVTKLVLDEADQML---HMGFLEDVEELVRQTSNKRQT------------ 179
Query: 247 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPER 306
M+ SAT+ LA + PL + L E
Sbjct: 180 -----------------------MLFSATMPSKIRGLADRYMRKPLDIRIQTKNITLDEI 216
Query: 307 LESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYS 366
+ + ES+ K L +++ IVF + + + L+ G + E
Sbjct: 217 KQIMVEVPESE-KIAKLSSMIDEYRPYLAIVFCHTKKRAIAVNMALSQKG---YETDELH 272
Query: 367 GLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRT 426
G Q R + +K FRE KIQ+LV++D RG+DVEGV ++ NYD P + +YIHR GRT
Sbjct: 273 GELSQPKREQVMKRFREAKIQILVATDIAARGLDVEGVTHIFNYDIPHDVDSYIHRIGRT 332
Query: 427 ARAGQLGRCFTLL 439
RAGQ G TL+
Sbjct: 333 GRAGQAGMAITLI 345
>gi|358365431|dbj|GAA82053.1| DEAD/DEAH box helicase [Aspergillus kawachii IFO 4308]
Length = 861
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 110/322 (34%), Positives = 158/322 (49%), Gaps = 50/322 (15%)
Query: 8 SMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETI-GPG 66
S+P PW+ +P+ S E L +D L L++ G F VQ V + GP
Sbjct: 237 SLP--PWLANPLRASAQERRKFADL-GIDSSLLRVLEDNGYHEAFAVQSTVIPLLLQGPT 293
Query: 67 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126
DLCI++ TGSGKTLSY LP+V L LR L+V+PTR+L Q ++ A
Sbjct: 294 NHPGDLCISAATGSGKTLSYVLPLVTALKPLPAPRLRGLIVVPTRELVKQAREACELCAA 353
Query: 127 AVGLSVGLAVGQSSIADEISELIKRPKL----------------EAGICYDPEDVLQEL- 169
GL V AVG +I DE L++ ++ + ++ +D + E
Sbjct: 354 GSGLRVASAVGNVAIKDEQRSLMRVDQVYGPATFKLRQNVQLTGDDWTNFNLQDYISEAG 413
Query: 170 -------------QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 216
+ VDIL+ TPGRL+DH+ T+GFTL++L +LV+DE DRLL E++Q
Sbjct: 414 DLSESLPGYVHRSEPNVDILICTPGRLVDHLRYTKGFTLKNLDWLVIDEADRLLNESFQE 473
Query: 217 WLPTVLQLTRSDNENRFSDASTFLPSAFG-SLKTIRRCGVERGFKDKPYPRLVKMVLSAT 275
W+ V+ S + P AFG S + G+ K+ PR K+VLSAT
Sbjct: 474 WVDVVMT----------SLDARKAPGAFGFSGNFLSELGLPIQSKE---PR--KIVLSAT 518
Query: 276 LTQDPNKLAQLDLHHPLFLTTG 297
+T+D KL L L +P + G
Sbjct: 519 MTRDVTKLNSLRLANPKLVVIG 540
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 57/88 (64%)
Query: 369 QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 428
+ S KTL A+R GKI V++++D +RG+D+ + +VVNYD PA I TY+HR GRTAR
Sbjct: 724 NKSSASRKTLTAYRRGKISVIIATDRASRGLDLRSLTHVVNYDVPASITTYVHRVGRTAR 783
Query: 429 AGQLGRCFTLLHKDEVKRFKKLLQKADN 456
AGQ G +TL+ E K F + K +
Sbjct: 784 AGQEGSAWTLVAHREGKWFASQIAKGSD 811
>gi|425780841|gb|EKV18837.1| DEAD/DEAH box helicase, putative [Penicillium digitatum PHI26]
gi|425783078|gb|EKV20947.1| DEAD/DEAH box helicase, putative [Penicillium digitatum Pd1]
Length = 809
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 109/324 (33%), Positives = 157/324 (48%), Gaps = 65/324 (20%)
Query: 14 WMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERD-- 71
W+ +P+ S+ + L LK+ L+ F VQ T+ P L + D
Sbjct: 219 WLANPLRKSVQDTRKFSELGIKSDLLKI-LEQQNYKQAFAVQ-----STVIPLLLQGDRN 272
Query: 72 ----LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 127
LCI++ TGSGKTLSY LP+V L R+ LR L+V+PTR+L Q ++ A
Sbjct: 273 HPGDLCISAATGSGKTLSYVLPLVTALPPRSASRLRGLIVVPTRELVKQARESCELCASG 332
Query: 128 VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDP--------------------EDVLQ 167
L +G AVG +I DE L++ ++ Y+P ED +
Sbjct: 333 SRLHIGSAVGNVAIKDEQKLLMRMDQV-----YNPAIQQQQRDGLNGNDWMNLSLEDCIS 387
Query: 168 EL--------------QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA 213
E + VDIL+ TPGRL+DHI T+GFTL+HL +LV+DE DRLL E+
Sbjct: 388 EAIGSNGSLPGHIQRSEPNVDILICTPGRLVDHIRYTKGFTLKHLEWLVIDEADRLLNES 447
Query: 214 YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273
+Q W+ V+ ++ N TF P K + G+ KP PR K++LS
Sbjct: 448 FQEWVDVVM-----NSLNSREAPETFGPGG----KVLSELGL--SIDAKP-PR--KVILS 493
Query: 274 ATLTQDPNKLAQLDLHHPLFLTTG 297
AT+T+D +KL L L +P + G
Sbjct: 494 ATMTRDISKLNSLRLVNPKMVIIG 517
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 70/114 (61%), Gaps = 1/114 (0%)
Query: 335 CIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 393
++FT S ES RL L++ L ++ + S KTL A+R+G+I V+V++D
Sbjct: 647 VLIFTKSSESASRLARLISLLHPALAKRVGTIIKSNKSSASRKTLTAYRQGRISVIVATD 706
Query: 394 AMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 447
+RG+D++ + +V+NYD P I TY+HR GRTARAG+ G ++L+ E + F
Sbjct: 707 RASRGLDLQSLTHVINYDIPTSITTYVHRVGRTARAGRAGSAWSLVAHREGRWF 760
>gi|375311376|ref|ZP_09776631.1| ATP-dependent RNA helicase dbpA [Paenibacillus sp. Aloe-11]
gi|375076556|gb|EHS54809.1| ATP-dependent RNA helicase dbpA [Paenibacillus sp. Aloe-11]
Length = 481
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 116/428 (27%), Positives = 192/428 (44%), Gaps = 83/428 (19%)
Query: 24 FEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKT 83
F D PL + AL ++G + VQ E I L ++DL + S TGSGKT
Sbjct: 6 FTDYPLSE------EIVRALNSLGYETPTKVQT----EVIPVALVKKDLVVKSQTGSGKT 55
Query: 84 LSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIAD 143
+Y +P+ + L + +AL++ PTR+LALQVK+ I + V G+
Sbjct: 56 AAYGIPLCE-LVDWNENKPQALILTPTRELALQVKEDITNIGRFKRIKVTSLYGKHPFHI 114
Query: 144 EISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLV 202
+ +EL +R I+V TPGR++DHI RG +LE + YLV
Sbjct: 115 QKAELKQR---------------------THIVVGTPGRVLDHIE--RGTLSLEQMAYLV 151
Query: 203 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDK 262
+DE D +L + + +++Q SD
Sbjct: 152 IDEADEMLNMGFIEQVQSIIQALPSDR--------------------------------- 178
Query: 263 PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL---TTGETRYKLPERLESYKLICESKLK 319
V M+ SAT D +L++ + HP+ + TG T + L +++ KL
Sbjct: 179 -----VTMLFSATFPDDVAQLSRKYMDHPVNIEIKATGITTATIDHSL--IQVMETDKLL 231
Query: 320 PLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLK 379
L + ++++ + CI+F + E+ + L +L G Q R + +
Sbjct: 232 LLQNLLIVEN--PDSCIIFCRTQEN---VDILFRELADLDYPCDRIHGGMEQEERFEVMN 286
Query: 380 AFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439
AFR G+ + L+++D RG+D+ + +V+NYD P ++Y+HR GRT RAG+ G+ T++
Sbjct: 287 AFRRGQFRYLIATDVAARGIDITNITHVINYDIPLEKESYVHRTGRTGRAGKTGKAITIV 346
Query: 440 HKDEVKRF 447
+ KR
Sbjct: 347 TPKDSKRL 354
>gi|317025605|ref|XP_001389412.2| ATP-dependent RNA helicase dbp6 [Aspergillus niger CBS 513.88]
Length = 861
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 111/322 (34%), Positives = 157/322 (48%), Gaps = 50/322 (15%)
Query: 8 SMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETI-GPG 66
S+P PW+ +P+ S E L +D L L++ G F VQ V + GP
Sbjct: 236 SLP--PWLANPLRASAQERRKFADL-GIDSSLLRVLEDNGYREAFAVQSTVIPLLLQGPT 292
Query: 67 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126
DLCI++ TGSGKTLSY LP+V L LR L+V+PTR+L Q ++ A
Sbjct: 293 NHPGDLCISAATGSGKTLSYVLPLVTALKPLPAPRLRGLIVVPTRELVKQAREACELCAA 352
Query: 127 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICY-----------------------DPE 163
GL V AVG +I DE L++ ++ + D
Sbjct: 353 GSGLRVASAVGNVAIKDEQRSLMRVDQVYGPATFKLRQNVQLTGDDWTNFNLQDYISDAG 412
Query: 164 DVLQEL-------QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 216
D+ + L + VDIL+ TPGRL+DH+ T+GFTL++L +LV+DE DRLL E++Q
Sbjct: 413 DLSESLPGYVHRSEPNVDILICTPGRLVDHLRYTKGFTLKNLEWLVIDEADRLLNESFQE 472
Query: 217 WLPTVLQLTRSDNENRFSDASTFLPSAFG-SLKTIRRCGVERGFKDKPYPRLVKMVLSAT 275
W+ V+ S + P AFG S + G+ K+ PR K+VLSAT
Sbjct: 473 WVDVVM----------TSLDARKAPDAFGFSGNFLSGLGLPIQSKE---PR--KVVLSAT 517
Query: 276 LTQDPNKLAQLDLHHPLFLTTG 297
+T+D KL L L +P + G
Sbjct: 518 MTRDVTKLNSLRLANPKLVVIG 539
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 57/88 (64%)
Query: 369 QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 428
+ S KTL A+R GKI V++++D +RG+D+ + +VVNYD PA I TY+HR GRTAR
Sbjct: 724 NKSSASRKTLTAYRRGKISVIIATDRASRGLDLRSLTHVVNYDVPASITTYVHRVGRTAR 783
Query: 429 AGQLGRCFTLLHKDEVKRFKKLLQKADN 456
AGQ G +TL+ E K F + K +
Sbjct: 784 AGQKGSAWTLVAHREGKWFASQIAKGSD 811
>gi|421061112|ref|ZP_15523489.1| DEAD/DEAH box helicase domain protein, partial [Pelosinus
fermentans B3]
gi|392451871|gb|EIW28841.1| DEAD/DEAH box helicase domain protein, partial [Pelosinus
fermentans B3]
Length = 344
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 112/373 (30%), Positives = 175/373 (46%), Gaps = 73/373 (19%)
Query: 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129
+D+ S TG+GKTL++ LPI++ + + ++AL++ PTR+LALQ+ A +A +G
Sbjct: 41 KDVVGQSQTGTGKTLAFILPILEKIEI-SKPIVQALIITPTRELALQITREVAKLADQLG 99
Query: 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV---LQELQSAVDILVATPGRLMDH 186
+ V L+V Y +DV +++L+ I++ TPGRLMDH
Sbjct: 100 IQV-LSV-----------------------YGGQDVDRQIKKLKGGAQIVIGTPGRLMDH 135
Query: 187 INATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFG 245
+ RG LE++ LV+DE D++L + +L V +L R + R +
Sbjct: 136 LR--RGTIQLENVTKLVLDEADQML---HMGFLEDVEELVRQTSNKRQT----------- 179
Query: 246 SLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPE 305
M+ SAT+ LA + PL + L E
Sbjct: 180 ------------------------MLFSATMPSKIRGLADRYMRKPLDIRIQTKNITLDE 215
Query: 306 RLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEY 365
+ + ES+ K + L +++ IVF + + + L+ G + E
Sbjct: 216 IKQIMVEVPESE-KIVKLSSMIDEYRPYLAIVFCHTKKRAIAVNMALSQKG---YETDEL 271
Query: 366 SGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGR 425
G Q R + +K FRE KIQ+LV++D RG+DVEGV ++ NYD P + +YIHR GR
Sbjct: 272 HGELSQPKREQVMKRFREAKIQILVATDIAARGLDVEGVTHIFNYDIPHDVDSYIHRIGR 331
Query: 426 TARAGQLGRCFTL 438
T RAGQ G TL
Sbjct: 332 TGRAGQAGMAITL 344
>gi|89070152|ref|ZP_01157481.1| ATP-dependent RNA helicase RhlE [Oceanicola granulosus HTCC2516]
gi|89044269|gb|EAR50415.1| ATP-dependent RNA helicase RhlE [Oceanicola granulosus HTCC2516]
Length = 477
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 122/426 (28%), Positives = 188/426 (44%), Gaps = 101/426 (23%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+P++ A++ G + P+Q + I P L RD+ + TG+GKT S+ LP++ TL
Sbjct: 9 LNPKVLKAIEEAGYETPTPIQ----EGAIPPALEGRDVLGIAQTGTGKTASFTLPMI-TL 63
Query: 95 SNRA---VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
+R R R+LV+ PTR+LA QV + F A L+ L +G
Sbjct: 64 LHRGRARARMPRSLVLCPTRELAAQVAENFDIYAKHTKLTKALLIG-------------- 109
Query: 152 PKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLL 210
G+ + +D L + VD+L+ATPGRL+DH RG L + +VVDE DR+L
Sbjct: 110 -----GVSFKEQDQL--IDKGVDVLIATPGRLLDHFE--RGKLLLTGVQIMVVDEADRML 160
Query: 211 REAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270
F+P +ER F P+ R +
Sbjct: 161 DMG-------------------------FIPD------------IERIFGLTPFTRQT-L 182
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL 330
SAT+ + ++ FL+ PER+E + S+ ++V S
Sbjct: 183 FFSATMAPEIERITNT------FLSN-------PERVEVARQASASETIAQHVVVFRPSR 229
Query: 331 ----GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYS--------------GLQRQS 372
G EK V + +ES C F ++ + + G QS
Sbjct: 230 KDREGSEKRAVLRAMIESEGENCRNGIIFCNRKVDVDVVAKSMKKNGYDAAPIHGDLDQS 289
Query: 373 VRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL 432
R +TL FR+G ++ LV+SD RG+D+ V++V NYD P++ + Y+HR GRT RAG+
Sbjct: 290 TRMRTLDGFRDGTLRFLVASDVAARGLDIPNVSHVFNYDVPSHAEDYVHRIGRTGRAGRE 349
Query: 433 GRCFTL 438
GR +
Sbjct: 350 GRAMMI 355
>gi|350638465|gb|EHA26821.1| hypothetical protein ASPNIDRAFT_35758 [Aspergillus niger ATCC 1015]
Length = 861
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 111/322 (34%), Positives = 157/322 (48%), Gaps = 50/322 (15%)
Query: 8 SMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETI-GPG 66
S+P PW+ +P+ S E L +D L L++ G F VQ V + GP
Sbjct: 236 SLP--PWLANPLRASAQERRKFADL-GIDSSLLRVLEDNGYREAFAVQSTVIPLLLQGPT 292
Query: 67 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126
DLCI++ TGSGKTLSY LP+V L LR L+V+PTR+L Q ++ A
Sbjct: 293 NHPGDLCISAATGSGKTLSYVLPLVTALKPLPAPRLRGLIVVPTRELVKQAREACELCAA 352
Query: 127 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICY-----------------------DPE 163
GL V AVG +I DE L++ ++ + D
Sbjct: 353 GSGLRVASAVGNVAIKDEQRSLMRVDQVYGPATFKLRQNVQLTGDDWTNFNLQDYISDAG 412
Query: 164 DVLQEL-------QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 216
D+ + L + VDIL+ TPGRL+DH+ T+GFTL++L +LV+DE DRLL E++Q
Sbjct: 413 DLSESLPGYVHRSEPNVDILICTPGRLVDHLRYTKGFTLKNLEWLVIDEADRLLNESFQE 472
Query: 217 WLPTVLQLTRSDNENRFSDASTFLPSAFG-SLKTIRRCGVERGFKDKPYPRLVKMVLSAT 275
W+ V+ S + P AFG S + G+ K+ PR K+VLSAT
Sbjct: 473 WVDVVM----------TSLDARKAPDAFGFSGNFLSGLGLPIQSKE---PR--KVVLSAT 517
Query: 276 LTQDPNKLAQLDLHHPLFLTTG 297
+T+D KL L L +P + G
Sbjct: 518 MTRDVTKLNSLRLANPKLVVIG 539
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 57/88 (64%)
Query: 369 QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 428
+ S KTL A+R GKI V++++D +RG+D+ + +VVNYD PA I TY+HR GRTAR
Sbjct: 724 NKSSASRKTLTAYRRGKISVIIATDRASRGLDLRSLTHVVNYDVPASITTYVHRVGRTAR 783
Query: 429 AGQLGRCFTLLHKDEVKRFKKLLQKADN 456
AGQ G +TL+ E K F + K +
Sbjct: 784 AGQKGSAWTLVAHREGKWFASQIAKGSD 811
>gi|392568267|gb|EIW61441.1| DEAD-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 465
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 138/481 (28%), Positives = 221/481 (45%), Gaps = 56/481 (11%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101
AL + I++ +Q A I P L RD N+ TGSGKT+++ALPI+Q LS
Sbjct: 10 ALSKLSINAPTEIQAAC----IPPLLQGRDCIGNAKTGSGKTIAFALPILQKLSLDPYGI 65
Query: 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD 161
ALV+ PTR+LA Q+ + FA + + L + VG + + EL RP
Sbjct: 66 F-ALVLTPTRELAFQIAEQFAVLGAPLSLRTAVVVGGIDMMAQALELGNRPH-------- 116
Query: 162 PEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPT 220
++VATPGR++D + +T G + L + +LV+DE DRLL ++ L
Sbjct: 117 -------------VVVATPGRIVDLLRSTSGEWDLSRIKFLVLDEADRLLTSSFAPELSY 163
Query: 221 VLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPY-PRLVKMVLSA-TLTQ 278
+ + + + S F + +++ I + G K KP+ R+ V + TL Q
Sbjct: 164 LFNILPKERQT-----SLFTATLTDAVERIADASPKPG-KQKPFVHRMTARVETVETLKQ 217
Query: 279 D----PNKLAQLDLHHPLFL-----TTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329
P+ + + L+H FL +T R PE+++ K ++K +P A
Sbjct: 218 YYILVPSHIREAYLYH--FLCNPPESTHHLRRAPPEKVKPTKKGSKAKARPSKKKASEDP 275
Query: 330 LGEEK---CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 386
E+ I+F + L LL L I+ Q R +L FR +
Sbjct: 276 DAIEQPPPTIIFCMRPRTAAYLTHLLQ---TLHIRATALHSRLTQRERLSSLALFRASVV 332
Query: 387 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 446
VLVS+D RG+D+E V VVN+D PA + Y HR GRTARAG+ G + + + + +R
Sbjct: 333 PVLVSTDVGARGLDIEDVALVVNWDLPAESEEYTHRVGRTARAGKGGLAVSFVTERDEER 392
Query: 447 FKKLLQKADNDSCPIHSIPSSLIESLRPVYKSVRGG---ISDEAFWKVGCDLHGVNRVRR 503
K+ ++ + ++E L V + R + D F K ++H + R +R
Sbjct: 393 VLKVEERIGTKLAELDLPEGKVLEQLNTVATAKRLANMELHDSDFGKRE-EIHKIKRAKR 451
Query: 504 S 504
+
Sbjct: 452 A 452
>gi|417859722|ref|ZP_12504778.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens F2]
gi|338822786|gb|EGP56754.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens F2]
Length = 501
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 120/417 (28%), Positives = 191/417 (45%), Gaps = 88/417 (21%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-NRA-V 99
A+ + G ++ P+Q I P L +RD+C + TG+GKT S+ LP++ L RA
Sbjct: 16 AIADAGYTTPTPIQAGA----IPPALEKRDICGIAQTGTGKTASFVLPMLTLLEKGRARA 71
Query: 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 159
R R L++ PTR+LA QV + F L+V L +G G+
Sbjct: 72 RMPRTLILEPTRELAAQVAENFEKYGKNHKLNVALLIG-------------------GVS 112
Query: 160 YDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWL 218
++ +D ++L+ D+L+ TPGRL+DH RG + + LV+DE DR+L
Sbjct: 113 FEDQD--RKLERGADVLICTPGRLLDHCE--RGKLLMTGVEILVIDEADRMLDMG----- 163
Query: 219 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ 278
F+P +ER K P+ R + SAT+
Sbjct: 164 --------------------FIPD------------IERIAKMIPFTRQT-LFFSATMPP 190
Query: 279 DPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE----SKLKPLYLVALLQSL--GE 332
+ KLA L +P TR ++ + + K + + + K A+L+ L E
Sbjct: 191 EIQKLADRFLQNP-------TRIEVAKPSSTAKTVTQRIVAAHNKDYEKRAVLRDLVRAE 243
Query: 333 E----KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 388
E I+F + + L L+ G + G Q R+ L+ FR+G + +
Sbjct: 244 EAELKNAIIFCNRKKDVADLFRSLDRHG---FSVGALHGDMDQRSRTTMLQNFRDGNLTL 300
Query: 389 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 445
LV+SD RG+D+ V++V N+D P + + Y+HR GRT RAG+ G+ FTL+ K + K
Sbjct: 301 LVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTLVTKSDAK 357
>gi|170734034|ref|YP_001765981.1| DEAD/DEAH box helicase [Burkholderia cenocepacia MC0-3]
gi|169817276|gb|ACA91859.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
MC0-3]
Length = 486
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 126/452 (27%), Positives = 195/452 (43%), Gaps = 81/452 (17%)
Query: 29 LDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL 88
+ L +P +K A+ +G +S P+Q +G G DL + TG+GKT + L
Sbjct: 3 FESLGLAEPLVK-AVNELGYTSPTPIQQQAIPAVLGGG----DLLAGAQTGTGKTAGFTL 57
Query: 89 PIVQTLSN------RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIA 142
PI+Q L A R +RAL++ PTR+LA QV++ A + + L + G
Sbjct: 58 PILQRLHTFYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFG----- 112
Query: 143 DEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLV 202
G+ +P+ + L+ VDI+VATPGRL+DH+ + L L LV
Sbjct: 113 --------------GVSINPQ--IDALKRGVDIVVATPGRLLDHMQ-QKTIDLSDLDILV 155
Query: 203 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDK 262
+DE DR+L G + I+R K
Sbjct: 156 LDEADRMLD--------------------------------MGFIHDIKRVLA------K 177
Query: 263 PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLY 322
P+ ++ SAT + + LA L P + R E + + K
Sbjct: 178 LPPQRQNLLFSATFSDEIKALADSLLDSPALIEVAR-RNTTAESVAQKIHPVDRDRKREL 236
Query: 323 LVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR 382
L L++ + +VFT + +RL L G I G + QS R++ L F+
Sbjct: 237 LTHLIREHNWFQVLVFTRTKHGANRLAEQLTKDG---ISAMAIHGNKSQSARTRALAEFK 293
Query: 383 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD 442
+QVLV++D RG+D++ + +VVN+D P + Y+HR GRT RAG G +L+ D
Sbjct: 294 NSTLQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVD 353
Query: 443 EVKRFKKLLQKADNDSCPIHSIPSSLIESLRP 474
E K+LL+ D + IP +I P
Sbjct: 354 E----KQLLR--DIERLIKREIPQEVIAGFEP 379
>gi|398994591|ref|ZP_10697490.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM21]
gi|398131912|gb|EJM21208.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM21]
Length = 495
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 126/446 (28%), Positives = 193/446 (43%), Gaps = 75/446 (16%)
Query: 6 KKSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGP 65
K PV+PW V E H L P L A+Q++G P+Q V +G
Sbjct: 84 KPKAPVIPWKLEDFVVEPQEGKTRFHDFKLAPELMHAIQDLGFPYCTPIQAQV----LGF 139
Query: 66 GLFERDLCINSPTGSGKTLSYALPIVQTL------SNRAVRCLRALVVLPTRDLALQVKD 119
L +D + TG+GKT ++ + I+ L R + RAL++ PTR+L +Q+
Sbjct: 140 TLAGKDAIGRAQTGTGKTAAFLISIITQLLQTPPPKERYMGEPRALIIAPTRELVVQIAK 199
Query: 120 VFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179
A + GL+V VG ++ LEA C DILVAT
Sbjct: 200 DAADLTKYTGLNVMTFVGGMDFDKQLKH------LEARHC--------------DILVAT 239
Query: 180 PGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTF 239
PGRL+D N L+ + +V+DE DR+L + + +++ T NE +
Sbjct: 240 PGRLLD-FNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKNERQ------- 291
Query: 240 LPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET 299
++ SAT T+D LA+ P + E
Sbjct: 292 -----------------------------TLLFSATFTEDVMNLAKQWTTEPSIVEI-EA 321
Query: 300 RYKLPERLES--YKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 357
+ E +E Y + K K LY L+ G E+ +VF + + R+ L G
Sbjct: 322 QNVASENVEQHIYAVAGADKYKLLY--NLVNDNGWERVMVFANRKDEVRRIEERLVRDG- 378
Query: 358 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417
+ + SG Q R KTL+ FREGKI+VLV++D RG+ ++G+++V+N+ P
Sbjct: 379 --VNAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEVPD 436
Query: 418 TYIHRAGRTARAGQLGRCFTLLHKDE 443
Y+HR GRT RAG G + +D+
Sbjct: 437 DYVHRIGRTGRAGADGVSISFAGEDD 462
>gi|15226155|ref|NP_180929.1| DEAD-box ATP-dependent RNA helicase 21 [Arabidopsis thaliana]
gi|75319077|sp|P93008.1|RH21_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 21
gi|1707017|gb|AAC69128.1| putative U5 small nuclear ribonucleoprotein, an RNA helicase
[Arabidopsis thaliana]
gi|17473908|gb|AAL38370.1| putative U5 small nuclear ribonucleoprotein, an RNA helicase
[Arabidopsis thaliana]
gi|20259792|gb|AAM13243.1| putative U5 small nuclear ribonucleoprotein, an RNA helicase
[Arabidopsis thaliana]
gi|330253781|gb|AEC08875.1| DEAD-box ATP-dependent RNA helicase 21 [Arabidopsis thaliana]
Length = 733
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 117/412 (28%), Positives = 187/412 (45%), Gaps = 60/412 (14%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS------ 95
A++ G P+Q+A I GL +RD+ + TGSGKT ++ LP++ +S
Sbjct: 327 AVERAGYKKPSPIQMAA----IPLGLQQRDVIGIAETGSGKTAAFVLPMLAYISRLPPMS 382
Query: 96 -NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
A+V+ PTR+LA Q+++ A +G V VG SI
Sbjct: 383 EENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIE------------ 430
Query: 155 EAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY 214
E G+ ++ +I++ATPGRL+D + R L Y+V+DE DR++ +
Sbjct: 431 EQGL---------KITQGCEIVIATPGRLIDCLE-RRYAVLNQCNYVVLDEADRMIDMGF 480
Query: 215 QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274
+ + VL S N K I R + SA
Sbjct: 481 EPQVAGVLDAMPSSN------LKPENEEEELDEKKIYRT---------------TYMFSA 519
Query: 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEK 334
T+ +LA+ L +P+ +T G T K + + + ++ + K L LL LGE+
Sbjct: 520 TMPPGVERLARKYLRNPVVVTIG-TAGKTTDLISQHVIMMKESEKFFRLQKLLDELGEKT 578
Query: 335 CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394
IVF ++ ++ + L+ G ++ G + Q R +L+ FR + VLV++D
Sbjct: 579 AIVFVNTKKNCDSIAKNLDKAG---YRVTTLHGGKSQEQREISLEGFRAKRYNVLVATDV 635
Query: 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG--RCFTLLHKDEV 444
+ RG+D+ V +V+NYD P +I+ Y HR GRT RAG+ G F LH EV
Sbjct: 636 VGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRAGKSGVATSFLTLHDTEV 687
>gi|260820614|ref|XP_002605629.1| hypothetical protein BRAFLDRAFT_283402 [Branchiostoma floridae]
gi|229290964|gb|EEN61639.1| hypothetical protein BRAFLDRAFT_283402 [Branchiostoma floridae]
Length = 591
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 195/419 (46%), Gaps = 84/419 (20%)
Query: 43 LQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCL 102
L+ +G + PVQ A I + +D+ + TGSGKTL++ +PI++ L R L
Sbjct: 20 LKELGFQHMTPVQAAC----IPLFMSNKDVAAEAVTGSGKTLAFVIPILEILQRR-TETL 74
Query: 103 R-----ALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSS-IADEISELIKRPKLE 155
R AL++ PTR+LALQ+ +V +A + LS L +G + +AD IK+ +
Sbjct: 75 RKHEVGALIITPTRELALQIDEVISAFTKRLPQLSQLLLIGGGNPVAD-----IKKYQ-- 127
Query: 156 AGICYDPEDVLQELQSAVDILVATPGRLMDHINATR-GFT----LEHLCYLVVDETDRLL 210
++ +I+V TPGRL D + G L+ L LV+DE DRLL
Sbjct: 128 --------------ENGANIIVCTPGRLEDILRRKEDGLNLAGHLKSLEVLVLDEADRLL 173
Query: 211 REAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270
++ + T+L ++LP RR G
Sbjct: 174 DMGFEMSINTIL---------------SYLPKQ-------RRTG---------------- 195
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGE------TRYKLPERLESYKLICESKLKPLYLV 324
+ SAT T++ L + L +P+ +T E + + P L++ ++C S K +LV
Sbjct: 196 LFSATQTKEVEALVRAGLRNPVRITVKEKNVAENVQQRTPASLDNLYMMCRSDEKFNHLV 255
Query: 325 ALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 384
A L+S G EK +VF S+ + L + ++ G +Q R+K FR+
Sbjct: 256 AFLRSHGNEKHMVFFSTCAGVDYFSSALRELLK-NTRVMSIHGKMKQK-RNKIFAQFRQA 313
Query: 385 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443
+ VLV +D M RG+D+ VN V+ +D P+ ++HR+GRTAR G+ G L +E
Sbjct: 314 ESGVLVCTDVMARGVDIPEVNWVLQFDPPSNASAFVHRSGRTARMGREGSAVVFLLPEE 372
>gi|114765123|ref|ZP_01444268.1| putative ATP-dependent RNA helicase protein [Pelagibaca bermudensis
HTCC2601]
gi|114542527|gb|EAU45553.1| putative ATP-dependent RNA helicase protein [Roseovarius sp.
HTCC2601]
Length = 430
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 128/442 (28%), Positives = 187/442 (42%), Gaps = 75/442 (16%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P L AL+ G S P+Q + I L D+ + TG+GKTL++ LP++ L
Sbjct: 9 LAPTLSEALKRNGFSEPTPIQ----NQAIPLALEGHDVLGLAQTGTGKTLAFGLPLIDGL 64
Query: 95 ----SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIK 150
A + ++ALV+ PTR+L Q+ D + L VG VG SI +I+ L +
Sbjct: 65 LAQPGKPAPKTVKALVLAPTRELVNQIADSLRQLTDGTKLRVGTVVGGQSINRQINFLSR 124
Query: 151 RPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 210
DILVATPGRL+D ++ + L + LV+DE D++L
Sbjct: 125 ---------------------GTDILVATPGRLIDLMD-RKAVDLSTVRQLVLDEADQML 162
Query: 211 REAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270
G + +RR + G PR M
Sbjct: 163 D--------------------------------MGFIHALRRIAPQLG-----TPRQT-M 184
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL 330
+ SAT+ + +L+ L +P + K +++ + KP L LL
Sbjct: 185 LFSATMPKQMEELSSAYLTNPRRVQVSPP-GKAADKITQSVHFVDKAGKPSKLRELLGRD 243
Query: 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 390
E +VF + RL L G G + Q R + +KAFR+G I VLV
Sbjct: 244 DESLTLVFARTKHGAERLMKGLVADG---YNAASIHGNKSQGQRDRAIKAFRDGDINVLV 300
Query: 391 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
++D RG+D+ GV VVNYD P Y+HR GRTARAG+ G DE ++
Sbjct: 301 ATDVAARGIDIPGVAYVVNYDLPEVPDNYVHRIGRTARAGREGEAIAFCAPDEADLLRQ- 359
Query: 451 LQKADNDSCPIHS--IPSSLIE 470
+QK P+ S P+ L E
Sbjct: 360 IQKLMKIDIPVASGDAPTELTE 381
>gi|363752539|ref|XP_003646486.1| hypothetical protein Ecym_4646 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890121|gb|AET39669.1| hypothetical protein Ecym_4646 [Eremothecium cymbalariae
DBVPG#7215]
Length = 490
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 116/428 (27%), Positives = 194/428 (45%), Gaps = 70/428 (16%)
Query: 46 MGI-SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA 104
MGI + F + +E I L RD+ + G+GKT ++ +P ++ + + V ++A
Sbjct: 43 MGIFEAGFEKPSPIQEEAIPIALTRRDILARAKNGTGKTAAFVIPTLEIVKPK-VNKIQA 101
Query: 105 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 164
L+++PTR+LALQ V + GLS + G +++ D+I
Sbjct: 102 LIMVPTRELALQTSQVVRTLGKHCGLSCMVTTGGTNLRDDI------------------- 142
Query: 165 VLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224
L V +LV TPGR++D + + + L ++DE D++L +++ + +L
Sbjct: 143 --MRLNEPVHVLVGTPGRVLD-LASRKVADLSECSLFIMDEADKMLSRDFKSLIEQIL-- 197
Query: 225 TRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 284
+FLPS+ SL +P VK + L NK
Sbjct: 198 -------------SFLPSSHQSL-----------LFSATFPLTVKEFMVKHL----NKPY 229
Query: 285 QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 344
+++L L L Y E E KL C L L L + I+F +S
Sbjct: 230 EINLMDELTLKGITQYYAFVE--ERQKLHC--------LNTLFSKLQINQAIIFCNS--- 276
Query: 345 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 404
T+R+ L +L +Q R+K FR+GK++ LV SD +TRG+D++ V
Sbjct: 277 TNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAV 336
Query: 405 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSI 464
N V+N+D P +TY+HR GR+ R G LG L++ ++ K+ Q+ + I SI
Sbjct: 337 NVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTE---IASI 393
Query: 465 PSSLIESL 472
P+ + ++L
Sbjct: 394 PTQIDKAL 401
>gi|107023606|ref|YP_621933.1| DEAD/DEAH box helicase [Burkholderia cenocepacia AU 1054]
gi|116690690|ref|YP_836313.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
cenocepacia HI2424]
gi|105893795|gb|ABF76960.1| DEAD/DEAH box helicase-like protein [Burkholderia cenocepacia AU
1054]
gi|116648779|gb|ABK09420.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
HI2424]
Length = 486
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 126/452 (27%), Positives = 195/452 (43%), Gaps = 81/452 (17%)
Query: 29 LDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL 88
+ L +P +K A+ +G +S P+Q +G G DL + TG+GKT + L
Sbjct: 3 FESLGLAEPLVK-AVNELGYTSPTPIQQQAIPAVLGGG----DLLAGAQTGTGKTAGFTL 57
Query: 89 PIVQTLSN------RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIA 142
PI+Q L A R +RAL++ PTR+LA QV++ A + + L + G
Sbjct: 58 PILQRLHTFYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFG----- 112
Query: 143 DEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLV 202
G+ +P+ + L+ VDI+VATPGRL+DH+ + L L LV
Sbjct: 113 --------------GVSINPQ--IDALKRGVDIVVATPGRLLDHMQ-QKTIDLSDLDILV 155
Query: 203 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDK 262
+DE DR+L G + I+R K
Sbjct: 156 LDEADRMLD--------------------------------MGFIHDIKRVLA------K 177
Query: 263 PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLY 322
P+ ++ SAT + + LA L P + R E + + K
Sbjct: 178 LPPQRQNLLFSATFSDEIKALADSLLDSPALIEVAR-RNTTAESVAQKIHPVDRDRKREL 236
Query: 323 LVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR 382
L L++ + +VFT + +RL L G I G + QS R++ L F+
Sbjct: 237 LTHLIREHNWFQVLVFTRTKHGANRLAEQLTKDG---ISAMAIHGNKSQSARTRALAEFK 293
Query: 383 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD 442
+QVLV++D RG+D++ + +VVN+D P + Y+HR GRT RAG G +L+ D
Sbjct: 294 NSTLQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVD 353
Query: 443 EVKRFKKLLQKADNDSCPIHSIPSSLIESLRP 474
E K+LL+ D + IP +I P
Sbjct: 354 E----KQLLR--DIERLIKREIPQEVIAGFEP 379
>gi|389774439|ref|ZP_10192558.1| DNA/RNA helicase [Rhodanobacter spathiphylli B39]
gi|388438038|gb|EIL94793.1| DNA/RNA helicase [Rhodanobacter spathiphylli B39]
Length = 638
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 116/410 (28%), Positives = 190/410 (46%), Gaps = 70/410 (17%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + AL ++G S P+Q A TI P + RD+ + TG+GKT ++ALPI+ +
Sbjct: 20 LHPDVLRALADVGYESPSPIQAA----TIPPLMEGRDVLGQAQTGTGKTAAFALPILSRI 75
Query: 95 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPK 153
+ + +ALV+ PTR+LA+QV + F A + GL V G
Sbjct: 76 DLKPGKP-QALVLAPTRELAIQVAEAFQKYATHMRGLQVLPIYG---------------- 118
Query: 154 LEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA 213
G Y P+ L L+ V ++V TPGR++DH++ L L YLV+DE D +LR
Sbjct: 119 ---GQSYGPQ--LHSLKRGVHVVVGTPGRVIDHLDKGT-LDLSELKYLVLDEADEMLRMG 172
Query: 214 YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273
+ + VLQ T + A ++ T+ R +R KD V++ +
Sbjct: 173 FIDDVEKVLQATPPQRQVALFSA---------TMPTVIRKIAQRHLKDP-----VEVTIK 218
Query: 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEE 333
++ T N +H + +G +KL L +L++ +
Sbjct: 219 SSTTTAAN------IHQRYWFVSG-----------MHKLDA--------LTRILEAEPFD 253
Query: 334 KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 393
I+F + ++T L L G + +G Q R + ++ ++GK+ +LV++D
Sbjct: 254 AMIIFARTKQATEELAGKLQARG---LAAAAINGDIAQPQRERVIQQLKDGKLDILVATD 310
Query: 394 AMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443
RG+DVE +++V NYD P ++Y+HR GRT RAG+ G + E
Sbjct: 311 VAARGLDVERISHVFNYDIPYDTESYVHRIGRTGRAGRSGEAILFVSPRE 360
>gi|384244948|gb|EIE18444.1| DEAD-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 674
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 121/419 (28%), Positives = 191/419 (45%), Gaps = 80/419 (19%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL------- 94
AL I +LFP+Q V+ GP RDL + TGSGKTL++ALP+++ L
Sbjct: 63 ALGKRNIKALFPIQKHVF----GPARAGRDLIGRARTGSGKTLAFALPVLENLLKENSQS 118
Query: 95 ---SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
R+ RC +++ PTR+LA QV+ F AP GL+VG G I +I
Sbjct: 119 PPQRGRSPRC---IILAPTRELAKQVEKEFQESAP--GLNVGCFYGGVDIGGQI------ 167
Query: 152 PKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 211
++L+S VD+ V TPGR++D IN L ++++DE D +L
Sbjct: 168 ---------------RQLRSGVDVAVGTPGRVIDLINRN-CLDLSLTRFVILDEADMMLS 211
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
+ + +L ++ + A+ +PS +K I R K P LV +V
Sbjct: 212 MGFSEDVEIILDSVPAERQTMLFSAT--MPSW---VKNITR-------KHLKNPALVDLV 259
Query: 272 LSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLG 331
A + P+ + + +H T E R + L + + +LG
Sbjct: 260 GDAQSGKMPDAIKTMAVH-----VTQEARRSI-----------------LVDLITVHALG 297
Query: 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVS 391
KCIVFT + + L+ L + G Q+ R + LK FR GK LV+
Sbjct: 298 -GKCIVFTQTKREADEVAASLS----LVHPCEALHGDISQAQREQVLKNFRNGKFTALVA 352
Query: 392 SDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
+D RG+D+ V+ VV+YD P + ++HR+GRT RAG+ G ++ + F+++
Sbjct: 353 TDVAARGLDIPDVDLVVHYDLPRDTEAFLHRSGRTGRAGKTGSTIAVVLPRDRSYFRRM 411
>gi|261193373|ref|XP_002623092.1| ATP-dependent RNA helicase DBP4 [Ajellomyces dermatitidis SLH14081]
gi|239588697|gb|EEQ71340.1| ATP-dependent RNA helicase DBP4 [Ajellomyces dermatitidis SLH14081]
Length = 810
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 126/439 (28%), Positives = 191/439 (43%), Gaps = 77/439 (17%)
Query: 32 LPCLDPRLKVALQNMGIS-SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPI 90
LP +P L G+S S F + + I L RD+ + TGSGKTL++ +P+
Sbjct: 54 LPLSEPTLN------GLSASHFKSLTDIQAKAIPHALKGRDILGAAKTGSGKTLAFLVPL 107
Query: 91 VQTLSNR---AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISE 147
++ L + L ALV+ PTR+LA+Q+ +V I S GL +G S+ +E
Sbjct: 108 LELLYRKQWTEYDGLGALVLSPTRELAIQIFEVLRKIGRHHTFSAGLVIGGKSLQEE--- 164
Query: 148 LIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 207
QE ++ILV TPGR++ H++ T F H+ LV+DE D
Sbjct: 165 -------------------QERLGRMNILVCTPGRMLQHMDQTAAFDTNHIQLLVLDEAD 205
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R++ +Q+ + ++ LP ER
Sbjct: 206 RIMDMGFQSTVDAIID---------------HLPK-------------ER---------- 227
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYK-LPERLESYKLICESKLKPLYLVAL 326
M+ SAT T+ + LA+L L +P +++ ET P +L+ ++ K L +
Sbjct: 228 QTMLFSATQTKKVSDLARLSLRNPEYISVHETAASATPAKLQQNYIVTPLPEKLDTLWSF 287
Query: 327 LQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 386
++S + K +VF SS + + H + I + G Q+Q R K F K
Sbjct: 288 IRSSLKSKIMVFFSSGKQVRFVYESFRHM-QPGISLLHLHGRQKQGARVDITKKFSAAKH 346
Query: 387 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH-KDEVK 445
L S+D RG+D V+ V+ D P TYIHRAGRTAR + GR L +E
Sbjct: 347 ACLFSTDIAARGLDFPAVDWVIQVDCPEDADTYIHRAGRTARYERNGRAVLFLEPSEEAG 406
Query: 446 RFKKLLQKADNDSCPIHSI 464
K+L QK PI I
Sbjct: 407 MLKRLEQK----KIPIEKI 421
>gi|406037586|ref|ZP_11044950.1| ATP-dependent RNA helicase RhlB [Acinetobacter parvus DSM 16617 =
CIP 108168]
Length = 383
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 113/415 (27%), Positives = 192/415 (46%), Gaps = 71/415 (17%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P+LK A+ +G + + P+Q V + T+ D + TG+GKT ++ + ++ L
Sbjct: 10 LHPQLKKAIDALGFTQMTPIQQKVLKYTLAG----HDAIGRAQTGTGKTAAFLISVINDL 65
Query: 95 SNRAVRCLR------ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
N ++ R AL++ PTR+LALQ++ A+ L V +G
Sbjct: 66 LNNPIQDQRFRGEPRALILAPTRELALQIESDAQALTKFSNLHVVTLLG----------- 114
Query: 149 IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208
G+ +D + + + ++ VDI+VATPGRL+D + + L+ + +LV+DE DR
Sbjct: 115 --------GVDFDKQKKMLD-KNFVDIIVATPGRLIDFVEQKEVW-LDKIEFLVIDEADR 164
Query: 209 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLV 268
LL ++P+V ++ R + S K R+
Sbjct: 165 LLD---MGFIPSVKRIVR-----------------YSSFKEQRQT--------------- 189
Query: 269 KMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ 328
++ SAT + D LA+ L P+ + E K +E + E K K L +L+
Sbjct: 190 -LMFSATFSYDVLNLARQWLFEPVMVEI-EPEQKTNVDVEQRVYMVEKKDKYKLLQEILR 247
Query: 329 SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 388
+K ++F + + RL L G K+ SG Q R K L F++GK +
Sbjct: 248 DEPIDKVMIFANRRDQVRRLYDHLKRDG---YKVGMLSGEIAQDKRLKMLDQFKQGKHNI 304
Query: 389 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443
++++D RG+ V+GV++V+N+ P Y+HR GRT RAG G + L +D+
Sbjct: 305 MIATDVAGRGIHVDGVSHVINFTLPEQSDDYVHRIGRTGRAGAQGVSISFLSEDD 359
>gi|444372413|ref|ZP_21171888.1| DEAD/DEAH box helicase, partial [Burkholderia cenocepacia
K56-2Valvano]
gi|443593626|gb|ELT62346.1| DEAD/DEAH box helicase, partial [Burkholderia cenocepacia
K56-2Valvano]
Length = 416
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 128/452 (28%), Positives = 196/452 (43%), Gaps = 81/452 (17%)
Query: 29 LDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL 88
+ L +P +K A+ +G +S P+Q +G G DL + TG+GKT + L
Sbjct: 3 FESLGLAEPLVK-AVNELGYTSPTPIQQQAIPAVLGGG----DLLAGAQTGTGKTAGFTL 57
Query: 89 PIVQTLSN------RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIA 142
PI+Q L A R +RAL++ PTR+LA QV++ A + + L + G SI
Sbjct: 58 PILQRLHTFYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSI- 116
Query: 143 DEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLV 202
P+++A L+ VDI+VATPGRL+DH+ + L L LV
Sbjct: 117 --------NPQIDA------------LKRGVDIVVATPGRLLDHMQ-QKTIDLSDLDILV 155
Query: 203 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDK 262
+DE DR+L G + I+R K
Sbjct: 156 LDEADRMLD--------------------------------MGFIHDIKRVLA------K 177
Query: 263 PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLY 322
P+ ++ SAT + + LA L P + R E + + K
Sbjct: 178 LPPQRQNLLFSATFSDEIKALADSLLDSPALIEVAR-RNTTAESVAQKIHPVDRDRKREL 236
Query: 323 LVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR 382
L L++ + +VFT + +RL L G I G + QS R++ L F+
Sbjct: 237 LTHLIREHNWFQVLVFTRTKHGANRLAEQLTKDG---ISAMAIHGNKSQSARTRALAEFK 293
Query: 383 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD 442
+QVLV++D RG+D++ + +VVN+D P + Y+HR GRT RAG G +L+ D
Sbjct: 294 NSTLQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVD 353
Query: 443 EVKRFKKLLQKADNDSCPIHSIPSSLIESLRP 474
E K+LL+ D + IP +I P
Sbjct: 354 E----KQLLR--DIERLIKREIPQEVIAGFEP 379
>gi|425777534|gb|EKV15702.1| ATP dependent RNA helicase (Dbp10), putative [Penicillium digitatum
Pd1]
gi|425779558|gb|EKV17605.1| ATP dependent RNA helicase (Dbp10), putative [Penicillium digitatum
PHI26]
Length = 912
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 111/396 (28%), Positives = 181/396 (45%), Gaps = 39/396 (9%)
Query: 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR-CLRALVVLPT 110
F V + ++TI + ++D+ + TGSGKT S+ +P+++ L + + RAL++ P+
Sbjct: 104 FSVPTPIQRKTIPVIMDDKDVVGMARTGSGKTASFVIPMIEKLKSHSTSFGARALIMSPS 163
Query: 111 RDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 170
R+LALQ V + L+ L +G S+ D+ + P
Sbjct: 164 RELALQTLKVVKEMGKGTNLTSVLLIGGDSLEDQFGMMANNP------------------ 205
Query: 171 SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 230
DI++ATPGR + H+ L + Y+V DE DRL + A L +L ++ +
Sbjct: 206 ---DIIIATPGRFL-HLKVEMDMDLSSIKYVVFDEADRLFEMGFAAQLTEILHGLPTNRQ 261
Query: 231 NRFSDASTFLPSAFGSLKTIRRCGVER------GFKDKPYPRLVKMVLSATLTQDPNKLA 284
A+ LP SL R G++ ++K P L + + L
Sbjct: 262 TLLFSAT--LPK---SLVEFARAGLQEPSLIRLDTENKVSPDLQNAFFAVKSSDKEGALL 316
Query: 285 QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYL-VALLQSLGEEKCIVFTSSVE 343
+ LH+ + + TGET+ R E+ + K + L +S E IVF ++
Sbjct: 317 HI-LHNIIKMPTGETQIGGKLRQEAENPTRKRKRSDVRLPSGFKESPTEHSTIVFAATKH 375
Query: 344 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG 403
L +LL G G Q+ R+ ++ FR G +LV +D RG+D+
Sbjct: 376 HVDYLYSLLVEAG---FATSYAYGSLDQTARNHHVQNFRSGISNILVVTDVAARGIDIPV 432
Query: 404 VNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439
+ NV+NYD P+ K +IHR GRTARAGQ G ++L+
Sbjct: 433 LANVINYDFPSQPKIFIHRVGRTARAGQKGWSYSLV 468
>gi|320582894|gb|EFW97111.1| pre-mRNA processing RNA-helicase, putative [Ogataea parapolymorpha
DL-1]
Length = 752
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 114/417 (27%), Positives = 191/417 (45%), Gaps = 72/417 (17%)
Query: 30 DHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALP 89
DHL L L+ AL ++G + P+Q E + + DL + TGSGKTL++ LP
Sbjct: 193 DHL-GLPLSLRSALDSLGFEAPTPIQC----EALPNVMSGHDLIGIAKTGSGKTLAFLLP 247
Query: 90 IV-QTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
+ Q L+N A +RALV+ PTR+LA+Q+ + + A+ L G SI+ +I+E+
Sbjct: 248 LFRQLLANPAAPSVRALVMTPTRELAMQIFNESSVFLEALKLRGCCCYGGQSISQQIAEI 307
Query: 149 IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG--FTLEHLCYLVVDET 206
K D++V TPGR++D + A G L H+ YLV+DE
Sbjct: 308 KK---------------------GCDLVVGTPGRIIDLLCANNGRVLRLSHVTYLVLDEA 346
Query: 207 DRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPR 266
DR+ ++ + +L++TR D +
Sbjct: 347 DRMFDMGFEPQVMKILKVTRPDRQT----------------------------------- 371
Query: 267 LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL--KPLYLV 324
++ SAT LA+ L P+ + G + ++ ++++ E + + L ++
Sbjct: 372 ---VLFSATFPPRMEALARRCLTDPVEVLVGAKNLVNDKIMQQFEILDEEQKFGRLLQVL 428
Query: 325 ALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 384
A QS K ++F +S L L G + + G + Q R + F+
Sbjct: 429 ARFQSSDSGKILIFVDKQDSCDSLANQLIIRGYPTLSLH---GGKEQIDRDGIISDFKSN 485
Query: 385 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK 441
I +LV++ +RG+DV+ +N VVNYD P +++ Y+HR GRT RAG+ G T + +
Sbjct: 486 VIDILVATSVASRGLDVKDLNLVVNYDSPNHMEDYVHRVGRTGRAGRSGTAVTFVTR 542
>gi|398906908|ref|ZP_10653669.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM50]
gi|398172306|gb|EJM60175.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM50]
Length = 495
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 126/446 (28%), Positives = 193/446 (43%), Gaps = 75/446 (16%)
Query: 6 KKSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGP 65
K PV+PW V E H L P L A+Q++G P+Q V +G
Sbjct: 84 KPKAPVIPWKLEDFVVEPQEGKTRFHDFKLAPELMHAIQDLGFPYCTPIQAQV----LGF 139
Query: 66 GLFERDLCINSPTGSGKTLSYALPIVQTL------SNRAVRCLRALVVLPTRDLALQVKD 119
L +D + TG+GKT ++ + I+ L R + RAL++ PTR+L +Q+
Sbjct: 140 TLAGKDAIGRAQTGTGKTAAFLISIITQLLQTPPPKERYMGEPRALIIAPTRELVVQIAK 199
Query: 120 VFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179
A + GL+V VG ++ LEA C DILVAT
Sbjct: 200 DAADLTKYTGLNVMTFVGGMDFDKQLKH------LEARHC--------------DILVAT 239
Query: 180 PGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTF 239
PGRL+D N L+ + +V+DE DR+L + + +++ T NE +
Sbjct: 240 PGRLLD-FNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKNERQ------- 291
Query: 240 LPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET 299
++ SAT T+D LA+ P + E
Sbjct: 292 -----------------------------TLLFSATFTEDVMNLAKQWTTDPSIVEI-EA 321
Query: 300 RYKLPERLES--YKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 357
+ E +E Y + K K LY L+ G E+ +VF + + R+ L G
Sbjct: 322 QNVASENVEQHIYAVAGADKYKLLY--NLVNDNGWERVMVFANRKDEVRRIEERLVRDG- 378
Query: 358 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417
+ + SG Q R KTL+ FREGKI+VLV++D RG+ ++G+++V+N+ P
Sbjct: 379 --VNAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEVPD 436
Query: 418 TYIHRAGRTARAGQLGRCFTLLHKDE 443
Y+HR GRT RAG G + +D+
Sbjct: 437 DYVHRIGRTGRAGADGVSISFAGEDD 462
>gi|386283896|ref|ZP_10061119.1| dead/deah box helicase domain-containing protein [Sulfurovum sp.
AR]
gi|385344799|gb|EIF51512.1| dead/deah box helicase domain-containing protein [Sulfurovum sp.
AR]
Length = 445
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 115/402 (28%), Positives = 181/402 (45%), Gaps = 73/402 (18%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVR 100
AL G S P+Q A+ P +F RD+ + TG+GKT ++LPI+Q LS V
Sbjct: 15 ALNEKGYESATPIQKALI-----PAMFTGRDIMAGAQTGTGKTAGFSLPILQELSKHFVE 69
Query: 101 CL---RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAG 157
+A++++PTR+LA QV A + L + G +++ + + +L+AG
Sbjct: 70 GQHYPKAVILVPTRELAKQVHASIEAYGKYLPLKSIVLYGGANLTSQAN------RLKAG 123
Query: 158 ICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAW 217
I DI+VAT GRL++HI + LE + YLV+DE D +L +
Sbjct: 124 I---------------DIIVATSGRLLEHI-GQKNINLESVAYLVLDEADTILDMGFVHE 167
Query: 218 LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLT 277
+ +LQ +N +++SATL+
Sbjct: 168 VGKILQHLPDKRQN--------------------------------------VLISATLS 189
Query: 278 QDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIV 337
+LA+ L P + ++ + +E E + K L L+ S ++ +V
Sbjct: 190 GSVKRLAEQILQKPKLIEV-DSMGTSAQSVEQIVYPVEKEKKTELLSYLIGSRNYKQVLV 248
Query: 338 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTR 397
FT E + LN G + I G + RS+ L+ F+EGK++VLV++D R
Sbjct: 249 FTRKKEVADEVSKELNLSGLITAVI---HGGKTSGERSRALEGFKEGKVRVLVATDIAAR 305
Query: 398 GMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439
G+D+ + V+NYD P YIHR GRT RAG G TL+
Sbjct: 306 GLDIPALGVVMNYDIPHVTGDYIHRIGRTGRAGAKGLAITLI 347
>gi|206559326|ref|YP_002230087.1| putative ATP-dependent RNA helicase 1 [Burkholderia cenocepacia
J2315]
gi|421868477|ref|ZP_16300125.1| ATP-dependent RNA helicase RhlE [Burkholderia cenocepacia H111]
gi|198035364|emb|CAR51239.1| putative ATP-dependent RNA helicase 1 [Burkholderia cenocepacia
J2315]
gi|358071499|emb|CCE51003.1| ATP-dependent RNA helicase RhlE [Burkholderia cenocepacia H111]
Length = 477
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 126/452 (27%), Positives = 195/452 (43%), Gaps = 81/452 (17%)
Query: 29 LDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL 88
+ L +P +K A+ +G +S P+Q +G G DL + TG+GKT + L
Sbjct: 3 FESLGLAEPLVK-AVNELGYTSPTPIQQQAIPAVLGGG----DLLAGAQTGTGKTAGFTL 57
Query: 89 PIVQTLSN------RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIA 142
PI+Q L A R +RAL++ PTR+LA QV++ A + + L + G
Sbjct: 58 PILQRLHTFYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFG----- 112
Query: 143 DEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLV 202
G+ +P+ + L+ VDI+VATPGRL+DH+ + L L LV
Sbjct: 113 --------------GVSINPQ--IDALKRGVDIVVATPGRLLDHMQ-QKTIDLSDLDILV 155
Query: 203 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDK 262
+DE DR+L G + I+R K
Sbjct: 156 LDEADRMLD--------------------------------MGFIHDIKRVLA------K 177
Query: 263 PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLY 322
P+ ++ SAT + + LA L P + R E + + K
Sbjct: 178 LPPQRQNLLFSATFSDEIKALADSLLDSPALIEVAR-RNTTAESVAQKIHPVDRDRKREL 236
Query: 323 LVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR 382
L L++ + +VFT + +RL L G I G + QS R++ L F+
Sbjct: 237 LTHLIREHNWFQVLVFTRTKHGANRLAEQLTKDG---ISAMAIHGNKSQSARTRALAEFK 293
Query: 383 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD 442
+QVLV++D RG+D++ + +VVN+D P + Y+HR GRT RAG G +L+ D
Sbjct: 294 NSTLQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVD 353
Query: 443 EVKRFKKLLQKADNDSCPIHSIPSSLIESLRP 474
E K+LL+ D + IP +I P
Sbjct: 354 E----KQLLR--DIERLIKREIPQEVIAGFEP 379
>gi|444357741|ref|ZP_21159253.1| DEAD/DEAH box helicase, partial [Burkholderia cenocepacia BC7]
gi|443605729|gb|ELT73559.1| DEAD/DEAH box helicase, partial [Burkholderia cenocepacia BC7]
Length = 403
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 128/452 (28%), Positives = 196/452 (43%), Gaps = 81/452 (17%)
Query: 29 LDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL 88
+ L +P +K A+ +G +S P+Q +G G DL + TG+GKT + L
Sbjct: 3 FESLGLAEPLVK-AVNELGYTSPTPIQQQAIPAVLGGG----DLLAGAQTGTGKTAGFTL 57
Query: 89 PIVQTLSN------RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIA 142
PI+Q L A R +RAL++ PTR+LA QV++ A + + L + G SI
Sbjct: 58 PILQRLHTFYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSI- 116
Query: 143 DEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLV 202
P+++A L+ VDI+VATPGRL+DH+ + L L LV
Sbjct: 117 --------NPQIDA------------LKRGVDIVVATPGRLLDHMQ-QKTIDLSDLDILV 155
Query: 203 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDK 262
+DE DR+L G + I+R K
Sbjct: 156 LDEADRMLD--------------------------------MGFIHDIKRVLA------K 177
Query: 263 PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLY 322
P+ ++ SAT + + LA L P + R E + + K
Sbjct: 178 LPPQRQNLLFSATFSDEIKALADSLLDSPALIEVAR-RNTTAESVAQKIHPVDRDRKREL 236
Query: 323 LVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR 382
L L++ + +VFT + +RL L G I G + QS R++ L F+
Sbjct: 237 LTHLIREHNWFQVLVFTRTKHGANRLAEQLTKDG---ISAMAIHGNKSQSARTRALAEFK 293
Query: 383 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD 442
+QVLV++D RG+D++ + +VVN+D P + Y+HR GRT RAG G +L+ D
Sbjct: 294 NSTLQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVD 353
Query: 443 EVKRFKKLLQKADNDSCPIHSIPSSLIESLRP 474
E K+LL+ D + IP +I P
Sbjct: 354 E----KQLLR--DIERLIKREIPQEVIAGFEP 379
>gi|398859346|ref|ZP_10615023.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM79]
gi|398237041|gb|EJN22804.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM79]
Length = 495
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 126/446 (28%), Positives = 193/446 (43%), Gaps = 75/446 (16%)
Query: 6 KKSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGP 65
K PV+PW V E H L P L A+Q++G P+Q V +G
Sbjct: 84 KPKAPVIPWKLEDFVVEPQEGKTRFHDFKLAPELMHAIQDLGFPYCTPIQAQV----LGF 139
Query: 66 GLFERDLCINSPTGSGKTLSYALPIVQTL------SNRAVRCLRALVVLPTRDLALQVKD 119
L +D + TG+GKT ++ + I+ L R + RAL++ PTR+L +Q+
Sbjct: 140 TLAGKDAIGRAQTGTGKTAAFLISIITQLLQTPPPKERYMGEPRALIIAPTRELVVQIAK 199
Query: 120 VFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179
A + GL+V VG ++ LEA C DILVAT
Sbjct: 200 DAADLTKYTGLNVMTFVGGMDFDKQLKH------LEARHC--------------DILVAT 239
Query: 180 PGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTF 239
PGRL+D N L+ + +V+DE DR+L + + +++ T NE +
Sbjct: 240 PGRLLD-FNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKNERQ------- 291
Query: 240 LPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET 299
++ SAT T+D LA+ P + E
Sbjct: 292 -----------------------------TLLFSATFTEDVMNLAKQWTTDPSIVEI-EA 321
Query: 300 RYKLPERLES--YKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 357
+ E +E Y + K K LY L+ G E+ +VF + + R+ L G
Sbjct: 322 QNVASENVEQHIYAVAGADKYKLLY--NLVNDNGWERVMVFANRKDEVRRIEERLVRDG- 378
Query: 358 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417
+ + SG Q R KTL+ FREGKI+VLV++D RG+ ++G+++V+N+ P
Sbjct: 379 --VNAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEVPD 436
Query: 418 TYIHRAGRTARAGQLGRCFTLLHKDE 443
Y+HR GRT RAG G + +D+
Sbjct: 437 DYVHRIGRTGRAGADGVSISFAGEDD 462
>gi|422306154|ref|ZP_16393339.1| type III restriction enzyme, res subunit [Vibrio cholerae
CP1035(8)]
gi|408627218|gb|EKL00035.1| type III restriction enzyme, res subunit [Vibrio cholerae
CP1035(8)]
Length = 423
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 127/415 (30%), Positives = 195/415 (46%), Gaps = 82/415 (19%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LDP L A++ MG S P QV E I L RD+ ++PTG+GKT ++ +P +Q L
Sbjct: 10 LDPILLEAIEEMGFSR--PTQVQA--EAIPQALDGRDVLASAPTGTGKTAAFVIPALQYL 65
Query: 95 SN---RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
+ R R L++ PTR+LA+QV + A+A L++ G
Sbjct: 66 LDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITG-------------- 111
Query: 152 PKLEAGICY-DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 210
G+ Y + D+L Q DI+VATPGRL+++I+A R F + +L++DE DR+L
Sbjct: 112 -----GVQYQEHADILATTQ---DIVVATPGRLLEYIDAER-FDCRAIEWLILDEADRML 162
Query: 211 REAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270
+ PTV +L+ E R+ T L SA T+ GVE GF
Sbjct: 163 DMGFG---PTVDRLS---TECRWR-KQTLLFSA-----TLEGRGVE-GF----------- 198
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRY-----KLPERLESYKLICESKLKPLYLVA 325
+A L +DP A +D P +++ +P ++E K I +
Sbjct: 199 --TADLLKDP---AHVDAEPPRRERKKISQWYHRADDMPHKVELLKKILTEQ-------- 245
Query: 326 LLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 385
E+ IVF + E RL L + +I G Q R+ + FREG
Sbjct: 246 ------AERSIVFLKTRE---RLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGD 296
Query: 386 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 440
+ +L+++D RG+DV +++V+N+D P Y+HR GRT RAG+ G +L+
Sbjct: 297 VNILLATDVAARGIDVPDISHVINFDLPHSADVYLHRIGRTGRAGKKGIAISLVE 351
>gi|239613981|gb|EEQ90968.1| ATP-dependent RNA helicase DBP4 [Ajellomyces dermatitidis ER-3]
gi|327353332|gb|EGE82189.1| ATP-dependent RNA helicase DBP4 [Ajellomyces dermatitidis ATCC
18188]
Length = 810
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 125/438 (28%), Positives = 190/438 (43%), Gaps = 75/438 (17%)
Query: 32 LPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIV 91
LP +P L N +S F + + I L RD+ + TGSGKTL++ +P++
Sbjct: 54 LPLSEPTL-----NGLSASHFKSLTDIQAKAIPHALKGRDILGAAKTGSGKTLAFLVPLL 108
Query: 92 QTLSNR---AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
+ L + L ALV+ PTR+LA+Q+ +V I S GL +G S+ +E
Sbjct: 109 ELLYRKQWTEYDGLGALVLSPTRELAIQIFEVLRKIGRHHTFSAGLVIGGKSLQEE---- 164
Query: 149 IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208
QE ++ILV TPGR++ H++ T F H+ LV+DE DR
Sbjct: 165 ------------------QERLGRMNILVCTPGRMLQHMDQTAAFDTNHIQLLVLDEADR 206
Query: 209 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLV 268
++ +Q+ + ++ LP ER
Sbjct: 207 IMDMGFQSTVDAIID---------------HLPK-------------ER----------Q 228
Query: 269 KMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYK-LPERLESYKLICESKLKPLYLVALL 327
M+ SAT T+ + LA+L L +P +++ ET P +L+ ++ K L + +
Sbjct: 229 TMLFSATQTKKVSDLARLSLRNPEYISVHETAASATPAKLQQNYIVTPLPEKLDTLWSFI 288
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
+S + K +VF SS + + H + I + G Q+Q R K F K
Sbjct: 289 RSSLKSKIMVFFSSGKQVRFVYESFRHM-QPGISLLHLHGRQKQGARVDITKKFSAAKHA 347
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH-KDEVKR 446
L S+D RG+D V+ V+ D P TYIHRAGRTAR + GR L +E
Sbjct: 348 CLFSTDIAARGLDFPAVDWVIQVDCPEDADTYIHRAGRTARYERNGRAVLFLEPSEEAGM 407
Query: 447 FKKLLQKADNDSCPIHSI 464
K+L QK PI I
Sbjct: 408 LKRLEQK----KIPIEKI 421
>gi|398842375|ref|ZP_10599559.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM102]
gi|398105852|gb|EJL95924.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM102]
Length = 495
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 126/446 (28%), Positives = 193/446 (43%), Gaps = 75/446 (16%)
Query: 6 KKSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGP 65
K PV+PW V E H L P L A+Q++G P+Q V +G
Sbjct: 84 KPKAPVIPWKLEDFVVEPQEGKTRFHDFKLAPELMHAIQDLGFPYCTPIQAQV----LGF 139
Query: 66 GLFERDLCINSPTGSGKTLSYALPIVQTL------SNRAVRCLRALVVLPTRDLALQVKD 119
L +D + TG+GKT ++ + I+ L R + RAL++ PTR+L +Q+
Sbjct: 140 TLAGKDAIGRAQTGTGKTAAFLISIITQLLQTPPPKERYMGEPRALIIAPTRELVVQIAK 199
Query: 120 VFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179
A + GL+V VG ++ LEA C DILVAT
Sbjct: 200 DAADLTKYTGLNVMTFVGGMDFDKQLKH------LEARHC--------------DILVAT 239
Query: 180 PGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTF 239
PGRL+D N L+ + +V+DE DR+L + + +++ T NE +
Sbjct: 240 PGRLLD-FNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKNERQ------- 291
Query: 240 LPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET 299
++ SAT T+D LA+ P + E
Sbjct: 292 -----------------------------TLLFSATFTEDVMNLAKQWTTDPSIVEI-EA 321
Query: 300 RYKLPERLES--YKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 357
+ E +E Y + K K LY L+ G E+ +VF + + R+ L G
Sbjct: 322 QNVASENVEQHIYAVAGADKYKLLY--NLVNDNGWERVMVFANRKDEVRRIEERLVRDG- 378
Query: 358 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417
+ + SG Q R KTL+ FREGKI+VLV++D RG+ ++G+++V+N+ P
Sbjct: 379 --VNAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEVPD 436
Query: 418 TYIHRAGRTARAGQLGRCFTLLHKDE 443
Y+HR GRT RAG G + +D+
Sbjct: 437 DYVHRIGRTGRAGADGVSISFAGEDD 462
>gi|385331840|ref|YP_005885791.1| DEAD/DEAH box helicase [Marinobacter adhaerens HP15]
gi|311694990|gb|ADP97863.1| DEAD/DEAH box helicase domain protein [Marinobacter adhaerens HP15]
Length = 427
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 126/417 (30%), Positives = 185/417 (44%), Gaps = 74/417 (17%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LD RL A+ +G P+Q ET+ L DL + TG+GKT ++ + +Q+L
Sbjct: 18 LDKRLLDAITAIGFEYCTPIQA----ETLPWTLACEDLIGQAQTGTGKTAAFLITAIQSL 73
Query: 95 -------SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISE 147
R R L + PTR+LA+Q+ + G +V VG
Sbjct: 74 LETPIPEKERFASEPRVLALAPTRELAMQIAKDAEQLCQHTGHNVVTVVG---------- 123
Query: 148 LIKRPKLEAGICYDPE-DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDET 206
G+ YD + D LQ VDILVATPGRL+D + + F L+ L L++DE
Sbjct: 124 ---------GMNYDKQRDQLQ--NEIVDILVATPGRLIDFLGSQDVF-LDQLDILILDEA 171
Query: 207 DRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPR 266
DR+L ++P V ++ IR+C P
Sbjct: 172 DRMLD---MGFIPDVKRI-------------------------IRKC--------TPKEE 195
Query: 267 LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVAL 326
++ SAT QD LA + + F+ E K ER+E + K LV
Sbjct: 196 RQTLLFSATFNQDVLNLASMWTSNAEFVEI-EPEQKTAERVEQTVYLVGDDEKLPVLVNF 254
Query: 327 LQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 386
L+ EK +VF + + L L + G +K+ SG Q+ R KTL F++G I
Sbjct: 255 LKRPEVEKALVFANRRDQCRDLEEDLRNQG---VKVALMSGEIAQNKRLKTLDQFKKGSI 311
Query: 387 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443
QVLV++D RG+ V GV +V NY+ P + Y+HR GRT RAG+ G + +D+
Sbjct: 312 QVLVATDVAGRGIHVNGVTHVFNYNLPDNAEDYVHRIGRTGRAGKHGVSISFAGEDD 368
>gi|412985798|emb|CCO16998.1| predicted protein [Bathycoccus prasinos]
Length = 689
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 120/417 (28%), Positives = 185/417 (44%), Gaps = 77/417 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + ALQ GI +LF +Q +T+ L +D+ + TG GKTL++ LPIV+ +
Sbjct: 89 LSPEVVSALQKKGIDALFAIQA----QTLDTALSGKDIVGRARTGCGKTLAFVLPIVEQI 144
Query: 95 --------SNRAVRCLRALVVL--PTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADE 144
S R ++ R +V + PTR+LA QV F + A L G + D+
Sbjct: 145 NKSDPTPASGRRLQGRRPVVCVLCPTRELAKQVGADFDWVGQAFNLKTVCVYGGAPYRDQ 204
Query: 145 ISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVD 204
Q L+S DI+V TPGR+ DH++ + ++L + V+D
Sbjct: 205 ---------------------EQGLRSGCDIIVGTPGRVKDHLD-RKNLKFDNLKFRVLD 242
Query: 205 ETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPY 264
E D +L + + T+L+++ D T L SA
Sbjct: 243 EADEMLNMGFVDDVETILKVS--------GDIQTLLFSA-------------------TL 275
Query: 265 PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLV 324
P VK + L +D A +DL G + K +++ L C+ + + +
Sbjct: 276 PPWVKDIAKRFLKKD---YATIDL-------VGNEKQKASGQVQHLLLPCQWQERVSLIP 325
Query: 325 ALLQSLGEE--KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR 382
L+++ +CI+F + LC L L K G Q+ R L+ FR
Sbjct: 326 DLIRAKAPTGGRCILFCDTKRDCTELCDALQS--SLEKGAKALHGDIAQNNREVVLQGFR 383
Query: 383 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439
+ K QVLV++D RG+D+ GV V+ + P +TYIHR+GRT RAG G C TLL
Sbjct: 384 DNKFQVLVATDVAARGLDISGVELVIQCEPPKDPETYIHRSGRTGRAGATGICVTLL 440
>gi|261213932|ref|ZP_05928213.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 3 str. Tulya]
gi|260915539|gb|EEX82400.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 3 str. Tulya]
Length = 482
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 118/420 (28%), Positives = 195/420 (46%), Gaps = 80/420 (19%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P++ A++ G ++ P+QV I P L +D+ + TG+GKT S+ LP++ L
Sbjct: 9 LSPKVIAAVEAAGYTAPTPIQVGA----IPPALERKDVLGIAQTGTGKTASFVLPMLTLL 64
Query: 95 S-NRA-VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
RA R R L++ PTR+LA QV++ F L+V L +G
Sbjct: 65 EKGRARARMPRTLILEPTRELAAQVEENFVKYGINHRLNVALLIG--------------- 109
Query: 153 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLR 211
G+ ++ ++ ++L+ D+L+ATPGR++DH RG L + LV+DE DR+L
Sbjct: 110 ----GVSFEEQE--RKLERGADVLIATPGRMLDHFE--RGKLLLTGVEILVIDEADRMLD 161
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
F+P +ER K P+ R +
Sbjct: 162 MG-------------------------FIPD------------IERICKLIPFTRQT-LF 183
Query: 272 LSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL---KPLYLVALLQ 328
SAT+ + KL + LH P+ + + + + +L+ K K L L+Q
Sbjct: 184 FSATMPPEITKLTEQFLHSPVRIEVAKASST--AKTVTQRLVKSGKKDWDKRAVLRDLIQ 241
Query: 329 SLGE--EKCIVFTSSVESTHRLC-TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 385
S G+ + I+F + + L +L H G Q R L +F++GK
Sbjct: 242 SEGDSLKNAIIFCNRKKDVSELFRSLTRH----EFDAGALHGDMDQRARMAMLSSFKDGK 297
Query: 386 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 445
+++LV+SD RG+D+ V++V N+D P + + Y+HR GRT RAG+ G+ FT++ + K
Sbjct: 298 LRLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSDTK 357
>gi|412992467|emb|CCO18447.1| predicted protein [Bathycoccus prasinos]
Length = 818
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 115/430 (26%), Positives = 200/430 (46%), Gaps = 52/430 (12%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIV-------QTL 94
A++ +G + P+Q+A +I GL +RD+ + TGSGKT ++ +P++ +
Sbjct: 396 AIEKVGYTKPSPIQMA----SIPIGLLKRDVIGVAETGSGKTCAFVVPMLAHIMGLPKMT 451
Query: 95 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
A ALV+ PTR+LA Q+++ A +G V VG SI D+
Sbjct: 452 DEVAADGPYALVMAPTRELAQQIEEETLKFAHFLGYRVACVVGGQSIEDQ---------- 501
Query: 155 EAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLC-YLVVDETDRLLREA 213
G+ +L+ V+I+V TPGR++D I + +T+ + C Y+V+DE DR++
Sbjct: 502 --GV---------QLRKGVEIVVGTPGRIIDVIE--KRYTVLNQCNYIVLDEADRMIDMG 548
Query: 214 YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273
++ + V++ S N A A + ++I R + S
Sbjct: 549 FEPQVTQVMEAMPSSNLKPIDMAEELDNKAIDNKQSIETSARYR----------TTYMFS 598
Query: 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEE 333
AT+ +LA+ L +P +T G + K + ++ + K L +L +
Sbjct: 599 ATMPPSVERLARTYLRNPAVVTIG-SAGKTSDLIKQTVIWVNRSEKERTLEQILSQHTQT 657
Query: 334 KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 393
+ IVF ++ T + G G + Q R L F+ G +LV++D
Sbjct: 658 QAIVFVNTKRGVDSCVTACHSMG---YSCGSIHGGKGQDAREAALTGFKRGDFDILVATD 714
Query: 394 AMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL---HKDEVKRFKKL 450
RG+DV+G++ VVNY+ PA I+ Y HR GRT RAG+ G + + +D + ++L
Sbjct: 715 VAGRGIDVKGIDLVVNYELPASIENYTHRIGRTGRAGRKGTAVSFITSEDQDIMYDLRQL 774
Query: 451 LQKADNDSCP 460
L +++N+ P
Sbjct: 775 LIESNNEVPP 784
>gi|422921886|ref|ZP_16955091.1| ATP-dependent RNA helicase srmB [Vibrio cholerae BJG-01]
gi|341647503|gb|EGS71581.1| ATP-dependent RNA helicase srmB [Vibrio cholerae BJG-01]
Length = 423
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 127/415 (30%), Positives = 195/415 (46%), Gaps = 82/415 (19%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LDP L A++ MG S P QV E I L RD+ ++PTG+GKT ++ +P +Q L
Sbjct: 10 LDPILLEAIEEMGFSR--PTQVQA--EAIPQALDGRDVLASAPTGTGKTAAFVIPALQYL 65
Query: 95 SN---RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
+ R R L++ PTR+LA+QV + A+A L++ G
Sbjct: 66 LDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITG-------------- 111
Query: 152 PKLEAGICY-DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 210
G+ Y + D+L Q DI+VATPGRL+++I+A R F + +L++DE DR+L
Sbjct: 112 -----GVQYQEHADILATTQ---DIVVATPGRLLEYIDAER-FDCRAIEWLILDEADRML 162
Query: 211 REAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270
+ PTV +L+ E R+ T L SA T+ GVE GF
Sbjct: 163 DMGFG---PTVDRLS---TECRWR-KQTLLFSA-----TLEGRGVE-GF----------- 198
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRY-----KLPERLESYKLICESKLKPLYLVA 325
+A L +DP A +D P +++ +P ++E K I +
Sbjct: 199 --TADLLKDP---AHVDAEPPRRERKKISQWYHRADDMPHKVELLKKILTEQ-------- 245
Query: 326 LLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 385
E+ IVF + E RL L + +I G Q R+ + FREG
Sbjct: 246 ------AERSIVFLKTRE---RLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGD 296
Query: 386 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 440
+ +L+++D RG+DV +++V+N+D P Y+HR GRT RAG+ G +L+
Sbjct: 297 VNILLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVE 351
>gi|417819516|ref|ZP_12466132.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HE39]
gi|423947618|ref|ZP_17733577.1| type III restriction enzyme, res subunit [Vibrio cholerae HE-40]
gi|423976888|ref|ZP_17737125.1| type III restriction enzyme, res subunit [Vibrio cholerae HE-46]
gi|340041078|gb|EGR02046.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HE39]
gi|408661658|gb|EKL32642.1| type III restriction enzyme, res subunit [Vibrio cholerae HE-40]
gi|408665986|gb|EKL36789.1| type III restriction enzyme, res subunit [Vibrio cholerae HE-46]
Length = 423
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 127/415 (30%), Positives = 195/415 (46%), Gaps = 82/415 (19%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LDP L A++ MG S P QV E I L RD+ ++PTG+GKT ++ +P +Q L
Sbjct: 10 LDPILLEAIEEMGFSR--PTQVQA--EAIPQALDGRDVLASAPTGTGKTAAFVIPALQYL 65
Query: 95 SN---RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
+ R R L++ PTR+LA+QV + A+A L++ G
Sbjct: 66 LDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITG-------------- 111
Query: 152 PKLEAGICY-DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 210
G+ Y + D+L Q DI+VATPGRL+++I+A R F + +L++DE DR+L
Sbjct: 112 -----GVQYQEHADILATTQ---DIVVATPGRLLEYIDAER-FDCRAIEWLILDEADRML 162
Query: 211 REAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270
+ PTV +L+ E R+ T L SA T+ GVE GF
Sbjct: 163 DMGFG---PTVDRLS---TECRWR-KQTLLFSA-----TLEGRGVE-GF----------- 198
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRY-----KLPERLESYKLICESKLKPLYLVA 325
+A L +DP A +D P +++ +P ++E K I +
Sbjct: 199 --TADLLKDP---AHVDAEPPRRERKKISQWYHRADDMPHKVELLKKILTEQ-------- 245
Query: 326 LLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 385
E+ IVF + E RL L + +I G Q R+ + FREG
Sbjct: 246 ------AERSIVFLKTRE---RLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGD 296
Query: 386 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 440
+ +L+++D RG+DV +++V+N+D P Y+HR GRT RAG+ G +L+
Sbjct: 297 VNILLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVE 351
>gi|121728399|ref|ZP_01681427.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae V52]
gi|147674594|ref|YP_001216154.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O395]
gi|153215838|ref|ZP_01950170.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 1587]
gi|153802013|ref|ZP_01956599.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MZO-3]
gi|153829171|ref|ZP_01981838.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 623-39]
gi|227117035|ref|YP_002818931.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O395]
gi|229512921|ref|ZP_04402388.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae TMA 21]
gi|229525313|ref|ZP_04414718.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae bv. albensis
VL426]
gi|229530466|ref|ZP_04419854.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 12129(1)]
gi|254226532|ref|ZP_04920115.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae V51]
gi|254291900|ref|ZP_04962682.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae AM-19226]
gi|262169959|ref|ZP_06037649.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC27]
gi|262191213|ref|ZP_06049412.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae CT 5369-93]
gi|297580786|ref|ZP_06942712.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC385]
gi|384423906|ref|YP_005633264.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae LMA3984-4]
gi|417823781|ref|ZP_12470373.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HE48]
gi|419829280|ref|ZP_14352768.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-1A2]
gi|419832080|ref|ZP_14355545.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-61A2]
gi|419835580|ref|ZP_14359025.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HC-46B1]
gi|421342154|ref|ZP_15792561.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-43B1]
gi|421350489|ref|ZP_15800855.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HE-25]
gi|421353468|ref|ZP_15803801.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HE-45]
gi|422916451|ref|ZP_16950789.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-02A1]
gi|423733943|ref|ZP_17707159.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-41B1]
gi|423817360|ref|ZP_17715391.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-55C2]
gi|423849398|ref|ZP_17719180.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-59A1]
gi|423879050|ref|ZP_17722785.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-60A1]
gi|423996872|ref|ZP_17740135.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HC-02C1]
gi|424008228|ref|ZP_17751178.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HC-44C1]
gi|424015575|ref|ZP_17755422.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HC-55B2]
gi|424020685|ref|ZP_17760465.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HC-59B1]
gi|424589905|ref|ZP_18029352.1| ATP-dependent RNA helicase srmB [Vibrio cholerae CP1037(10)]
gi|424624056|ref|ZP_18062533.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-50A1]
gi|424628551|ref|ZP_18066856.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-51A1]
gi|424632587|ref|ZP_18070703.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-52A1]
gi|424635673|ref|ZP_18073694.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-55A1]
gi|424639587|ref|ZP_18077483.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-56A1]
gi|424647670|ref|ZP_18085346.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-57A1]
gi|429887891|ref|ZP_19369396.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae PS15]
gi|443528571|ref|ZP_21094605.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-78A1]
gi|121629333|gb|EAX61765.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae V52]
gi|124114555|gb|EAY33375.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 1587]
gi|124122472|gb|EAY41215.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MZO-3]
gi|125620936|gb|EAZ49287.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae V51]
gi|146316477|gb|ABQ21016.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O395]
gi|148875360|gb|EDL73495.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 623-39]
gi|150422186|gb|EDN14151.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae AM-19226]
gi|227012485|gb|ACP08695.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O395]
gi|229332239|gb|EEN97727.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 12129(1)]
gi|229338894|gb|EEO03911.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae bv. albensis
VL426]
gi|229350170|gb|EEO15123.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae TMA 21]
gi|259156570|gb|ACV96513.1| ATP-dependent RNA helicase SrmB [Vibrio fluvialis Ind1]
gi|262021693|gb|EEY40404.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC27]
gi|262032915|gb|EEY51454.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae CT 5369-93]
gi|297535202|gb|EFH74037.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC385]
gi|327483459|gb|AEA77866.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae LMA3984-4]
gi|340048410|gb|EGR09332.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HE48]
gi|341640084|gb|EGS64679.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-02A1]
gi|395945657|gb|EJH56322.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-43B1]
gi|395954611|gb|EJH65221.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HE-25]
gi|395954815|gb|EJH65424.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HE-45]
gi|408015598|gb|EKG53178.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-50A1]
gi|408020789|gb|EKG58076.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-52A1]
gi|408026789|gb|EKG63784.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-56A1]
gi|408027224|gb|EKG64206.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-55A1]
gi|408036082|gb|EKG72529.1| ATP-dependent RNA helicase srmB [Vibrio cholerae CP1037(10)]
gi|408036575|gb|EKG72999.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-57A1]
gi|408058594|gb|EKG93384.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-51A1]
gi|408621914|gb|EKK94906.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-1A2]
gi|408631713|gb|EKL04241.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-41B1]
gi|408636583|gb|EKL08720.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-55C2]
gi|408643758|gb|EKL15475.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-60A1]
gi|408644797|gb|EKL16471.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-59A1]
gi|408651981|gb|EKL23220.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-61A2]
gi|408854250|gb|EKL94014.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HC-02C1]
gi|408858993|gb|EKL98663.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HC-46B1]
gi|408861797|gb|EKM01364.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HC-55B2]
gi|408866098|gb|EKM05487.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HC-44C1]
gi|408866550|gb|EKM05930.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HC-59B1]
gi|429225059|gb|EKY31345.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae PS15]
gi|443453145|gb|ELT16978.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-78A1]
Length = 423
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 127/415 (30%), Positives = 195/415 (46%), Gaps = 82/415 (19%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LDP L A++ MG S P QV E I L RD+ ++PTG+GKT ++ +P +Q L
Sbjct: 10 LDPILLEAIEEMGFSR--PTQVQA--EAIPQALDGRDVLASAPTGTGKTAAFVIPALQYL 65
Query: 95 SN---RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
+ R R L++ PTR+LA+QV + A+A L++ G
Sbjct: 66 LDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITG-------------- 111
Query: 152 PKLEAGICY-DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 210
G+ Y + D+L Q DI+VATPGRL+++I+A R F + +L++DE DR+L
Sbjct: 112 -----GVQYQEHADILATTQ---DIVVATPGRLLEYIDAER-FDCRAIEWLILDEADRML 162
Query: 211 REAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270
+ PTV +L+ E R+ T L SA T+ GVE GF
Sbjct: 163 DMGFG---PTVDRLS---TECRWR-KQTLLFSA-----TLEGRGVE-GF----------- 198
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRY-----KLPERLESYKLICESKLKPLYLVA 325
+A L +DP A +D P +++ +P ++E K I +
Sbjct: 199 --TADLLKDP---AHVDAEPPRRERKKISQWYHRADDMPHKVELLKKILTEQ-------- 245
Query: 326 LLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 385
E+ IVF + E RL L + +I G Q R+ + FREG
Sbjct: 246 ------AERSIVFLKTRE---RLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGD 296
Query: 386 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 440
+ +L+++D RG+DV +++V+N+D P Y+HR GRT RAG+ G +L+
Sbjct: 297 VNILLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVE 351
>gi|15640680|ref|NP_230309.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121587852|ref|ZP_01677609.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 2740-80]
gi|153818685|ref|ZP_01971352.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae NCTC 8457]
gi|153822294|ref|ZP_01974961.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae B33]
gi|227080841|ref|YP_002809392.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae M66-2]
gi|229505718|ref|ZP_04395228.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae BX 330286]
gi|229508708|ref|ZP_04398201.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae B33]
gi|229519543|ref|ZP_04408986.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC9]
gi|229608737|ref|YP_002879385.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MJ-1236]
gi|254850991|ref|ZP_05240341.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MO10]
gi|255743880|ref|ZP_05417836.1| ATP-dependent RNA helicase SrmB [Vibrio cholera CIRS 101]
gi|262156099|ref|ZP_06029218.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae INDRE 91/1]
gi|298500776|ref|ZP_07010579.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MAK 757]
gi|360034568|ref|YP_004936331.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O1 str.
2010EL-1786]
gi|379740519|ref|YP_005332488.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae IEC224]
gi|417812707|ref|ZP_12459366.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-49A2]
gi|417815574|ref|ZP_12462207.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HCUF01]
gi|418331709|ref|ZP_12942650.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-06A1]
gi|418336129|ref|ZP_12945030.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-23A1]
gi|418342965|ref|ZP_12949760.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-28A1]
gi|418348133|ref|ZP_12952868.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-43A1]
gi|418354556|ref|ZP_12957278.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-61A1]
gi|419825128|ref|ZP_14348634.1| type III restriction enzyme, res subunit [Vibrio cholerae
CP1033(6)]
gi|421315721|ref|ZP_15766293.1| ATP-dependent RNA helicase srmB [Vibrio cholerae CP1032(5)]
gi|421319517|ref|ZP_15770076.1| ATP-dependent RNA helicase srmB [Vibrio cholerae CP1038(11)]
gi|421323566|ref|ZP_15774094.1| ATP-dependent RNA helicase srmB [Vibrio cholerae CP1041(14)]
gi|421327962|ref|ZP_15778477.1| ATP-dependent RNA helicase srmB [Vibrio cholerae CP1042(15)]
gi|421330887|ref|ZP_15781369.1| ATP-dependent RNA helicase srmB [Vibrio cholerae CP1046(19)]
gi|421334554|ref|ZP_15785022.1| ATP-dependent RNA helicase srmB [Vibrio cholerae CP1048(21)]
gi|421338449|ref|ZP_15788885.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-20A2]
gi|421345563|ref|ZP_15795949.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-46A1]
gi|422890766|ref|ZP_16933178.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-40A1]
gi|422901644|ref|ZP_16937007.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-48A1]
gi|422905868|ref|ZP_16940713.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-70A1]
gi|422912462|ref|ZP_16946988.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HFU-02]
gi|422924947|ref|ZP_16957977.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-38A1]
gi|423144265|ref|ZP_17131879.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-19A1]
gi|423148917|ref|ZP_17136276.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-21A1]
gi|423152762|ref|ZP_17139960.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-22A1]
gi|423155567|ref|ZP_17142680.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-32A1]
gi|423159405|ref|ZP_17146377.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-33A2]
gi|423164088|ref|ZP_17150875.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-48B2]
gi|423730221|ref|ZP_17703539.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-17A1]
gi|423748411|ref|ZP_17711549.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-50A2]
gi|423891940|ref|ZP_17725627.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-62A1]
gi|423926714|ref|ZP_17730242.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-77A1]
gi|424001272|ref|ZP_17744361.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HC-17A2]
gi|424005426|ref|ZP_17748410.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HC-37A1]
gi|424023435|ref|ZP_17763099.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HC-62B1]
gi|424026240|ref|ZP_17765856.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HC-69A1]
gi|424585565|ref|ZP_18025159.1| ATP-dependent RNA helicase srmB [Vibrio cholerae CP1030(3)]
gi|424594260|ref|ZP_18033598.1| ATP-dependent RNA helicase srmB [Vibrio cholerae CP1040(13)]
gi|424598125|ref|ZP_18037323.1| ATP-dependent RNA helicase srmB [Vibrio Cholerae CP1044(17)]
gi|424600881|ref|ZP_18040038.1| ATP-dependent RNA helicase srmB [Vibrio cholerae CP1047(20)]
gi|424605857|ref|ZP_18044822.1| ATP-dependent RNA helicase srmB [Vibrio cholerae CP1050(23)]
gi|424609692|ref|ZP_18048550.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-39A1]
gi|424612495|ref|ZP_18051302.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-41A1]
gi|424616317|ref|ZP_18055008.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-42A1]
gi|424621251|ref|ZP_18059779.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-47A1]
gi|424644230|ref|ZP_18081984.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-56A2]
gi|424651873|ref|ZP_18089397.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-57A2]
gi|424655822|ref|ZP_18093124.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-81A2]
gi|440708953|ref|ZP_20889613.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 4260B]
gi|443502767|ref|ZP_21069756.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-64A1]
gi|443506681|ref|ZP_21073471.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-65A1]
gi|443510787|ref|ZP_21077451.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-67A1]
gi|443514349|ref|ZP_21080888.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-68A1]
gi|443518163|ref|ZP_21084580.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-71A1]
gi|443523029|ref|ZP_21089269.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-72A2]
gi|443530660|ref|ZP_21096676.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-7A1]
gi|443534420|ref|ZP_21100332.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-80A1]
gi|443538009|ref|ZP_21103865.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-81A1]
gi|449054023|ref|ZP_21732691.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O1 str. Inaba
G4222]
gi|9655098|gb|AAF93826.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121547888|gb|EAX57972.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 2740-80]
gi|126510765|gb|EAZ73359.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae NCTC 8457]
gi|126520190|gb|EAZ77413.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae B33]
gi|227008729|gb|ACP04941.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae M66-2]
gi|229344232|gb|EEO09207.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC9]
gi|229354232|gb|EEO19162.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae B33]
gi|229357941|gb|EEO22858.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae BX 330286]
gi|229371392|gb|ACQ61815.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MJ-1236]
gi|254846696|gb|EET25110.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MO10]
gi|255738511|gb|EET93900.1| ATP-dependent RNA helicase SrmB [Vibrio cholera CIRS 101]
gi|262030135|gb|EEY48780.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae INDRE 91/1]
gi|297540557|gb|EFH76615.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MAK 757]
gi|340042874|gb|EGR03837.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HCUF01]
gi|340043168|gb|EGR04128.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-49A2]
gi|341624967|gb|EGS50440.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-70A1]
gi|341626139|gb|EGS51545.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-48A1]
gi|341626754|gb|EGS52112.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-40A1]
gi|341640638|gb|EGS65219.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HFU-02]
gi|341648304|gb|EGS72368.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-38A1]
gi|356420432|gb|EHH73958.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-06A1]
gi|356421145|gb|EHH74650.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-21A1]
gi|356425968|gb|EHH79307.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-19A1]
gi|356433652|gb|EHH86839.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-23A1]
gi|356434162|gb|EHH87344.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-22A1]
gi|356437692|gb|EHH90778.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-28A1]
gi|356442736|gb|EHH95571.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-32A1]
gi|356447711|gb|EHI00499.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-43A1]
gi|356449961|gb|EHI02697.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-33A2]
gi|356453810|gb|EHI06470.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-61A1]
gi|356456225|gb|EHI08834.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-48B2]
gi|356645722|gb|AET25777.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O1 str.
2010EL-1786]
gi|378794029|gb|AFC57500.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae IEC224]
gi|395922462|gb|EJH33278.1| ATP-dependent RNA helicase srmB [Vibrio cholerae CP1032(5)]
gi|395922781|gb|EJH33596.1| ATP-dependent RNA helicase srmB [Vibrio cholerae CP1041(14)]
gi|395925842|gb|EJH36639.1| ATP-dependent RNA helicase srmB [Vibrio cholerae CP1038(11)]
gi|395930547|gb|EJH41294.1| ATP-dependent RNA helicase srmB [Vibrio cholerae CP1042(15)]
gi|395934740|gb|EJH45478.1| ATP-dependent RNA helicase srmB [Vibrio cholerae CP1046(19)]
gi|395937347|gb|EJH48066.1| ATP-dependent RNA helicase srmB [Vibrio cholerae CP1048(21)]
gi|395944885|gb|EJH55557.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-20A2]
gi|395948508|gb|EJH59153.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-46A1]
gi|395962360|gb|EJH72659.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-56A2]
gi|395963553|gb|EJH73816.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-57A2]
gi|395966375|gb|EJH76500.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-42A1]
gi|395974547|gb|EJH84072.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-47A1]
gi|395977411|gb|EJH86821.1| ATP-dependent RNA helicase srmB [Vibrio cholerae CP1030(3)]
gi|395979101|gb|EJH88465.1| ATP-dependent RNA helicase srmB [Vibrio cholerae CP1047(20)]
gi|408009418|gb|EKG47324.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-39A1]
gi|408016191|gb|EKG53745.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-41A1]
gi|408036855|gb|EKG73271.1| ATP-dependent RNA helicase srmB [Vibrio cholerae CP1040(13)]
gi|408044566|gb|EKG80472.1| ATP-dependent RNA helicase srmB [Vibrio Cholerae CP1044(17)]
gi|408046274|gb|EKG81974.1| ATP-dependent RNA helicase srmB [Vibrio cholerae CP1050(23)]
gi|408056861|gb|EKG91732.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-81A2]
gi|408611399|gb|EKK84760.1| type III restriction enzyme, res subunit [Vibrio cholerae
CP1033(6)]
gi|408627074|gb|EKK99899.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-17A1]
gi|408640810|gb|EKL12594.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-50A2]
gi|408658100|gb|EKL29172.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-77A1]
gi|408659130|gb|EKL30185.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-62A1]
gi|408848148|gb|EKL88201.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HC-37A1]
gi|408849091|gb|EKL89124.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HC-17A2]
gi|408873251|gb|EKM12453.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HC-62B1]
gi|408881153|gb|EKM20063.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HC-69A1]
gi|439975694|gb|ELP51806.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 4260B]
gi|443432887|gb|ELS75408.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-64A1]
gi|443436712|gb|ELS82829.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-65A1]
gi|443440274|gb|ELS89963.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-67A1]
gi|443444369|gb|ELS97643.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-68A1]
gi|443448205|gb|ELT04840.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-71A1]
gi|443450979|gb|ELT11243.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-72A2]
gi|443458861|gb|ELT26256.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-7A1]
gi|443462424|gb|ELT33463.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-80A1]
gi|443466442|gb|ELT41100.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-81A1]
gi|448266494|gb|EMB03721.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O1 str. Inaba
G4222]
Length = 423
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 127/415 (30%), Positives = 195/415 (46%), Gaps = 82/415 (19%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LDP L A++ MG S P QV E I L RD+ ++PTG+GKT ++ +P +Q L
Sbjct: 10 LDPILLEAIEEMGFSR--PTQVQA--EAIPQALDGRDVLASAPTGTGKTAAFVIPALQYL 65
Query: 95 SN---RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
+ R R L++ PTR+LA+QV + A+A L++ G
Sbjct: 66 LDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITG-------------- 111
Query: 152 PKLEAGICY-DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 210
G+ Y + D+L Q DI+VATPGRL+++I+A R F + +L++DE DR+L
Sbjct: 112 -----GVQYQEHADILATTQ---DIVVATPGRLLEYIDAER-FDCRAIEWLILDEADRML 162
Query: 211 REAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270
+ PTV +L+ E R+ T L SA T+ GVE GF
Sbjct: 163 DMGFG---PTVDRLS---TECRWR-KQTLLFSA-----TLEGRGVE-GF----------- 198
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRY-----KLPERLESYKLICESKLKPLYLVA 325
+A L +DP A +D P +++ +P ++E K I +
Sbjct: 199 --TADLLKDP---AHVDAEPPRRERKKISQWYHRADDMPHKVELLKKILTEQ-------- 245
Query: 326 LLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 385
E+ IVF + E RL L + +I G Q R+ + FREG
Sbjct: 246 ------AERSIVFLKTRE---RLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGD 296
Query: 386 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 440
+ +L+++D RG+DV +++V+N+D P Y+HR GRT RAG+ G +L+
Sbjct: 297 VNILLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVE 351
>gi|82543242|ref|YP_407189.1| ATP-dependent RNA helicase RhlE [Shigella boydii Sb227]
gi|81244653|gb|ABB65361.1| putative ATP-dependent RNA helicase [Shigella boydii Sb227]
Length = 454
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 123/429 (28%), Positives = 195/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR + K +
Sbjct: 160 RML--------------------------------DMGFIHDIRRVLTKLPAKRQ----- 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ L +PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLQNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSSDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>gi|294497529|ref|YP_003561229.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551]
gi|294347466|gb|ADE67795.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551]
Length = 481
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 118/404 (29%), Positives = 185/404 (45%), Gaps = 72/404 (17%)
Query: 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125
L ERD+ + S TGSGKT S+ +P+ + L N +ALV+ PTR+LA QVK+ I
Sbjct: 38 ALEERDVVVKSQTGSGKTASFGIPLCE-LVNWEENKPQALVLTPTRELAAQVKEDITNIG 96
Query: 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD 185
+ G+S A + K+ EL+ I+V TPGR++D
Sbjct: 97 RFKRIKAAAVYGKSPFA--------KQKV-------------ELKQKTHIVVGTPGRVLD 135
Query: 186 HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFG 245
HI LE + YLV+DE D +L + + ++Q LPS
Sbjct: 136 HIEK-ETLALEKIRYLVIDEADEMLNMGFIDQVEAIIQ---------------HLPS--- 176
Query: 246 SLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL---FLTTGETRYK 302
ER V M+ SATL +D +L++ + P+ G T
Sbjct: 177 ----------ER----------VTMLFSATLPEDIEELSRKYMKKPVDVEIKANGLTTST 216
Query: 303 LPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKI 362
+ + S + E K + L V +++ + CI+F + E + L L+ FG KI
Sbjct: 217 IDHSVISVE--NERKFELLKDVTTVEN--PDSCIIFCRTQEQVNTLLDDLDDFGYPCDKI 272
Query: 363 KEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHR 422
G Q R + + F++GK + LV++D RG+D++ + +V+NYD P ++Y+HR
Sbjct: 273 ---HGAMVQEDRFEVMNDFKKGKFRYLVATDVAARGIDIDNITHVINYDLPLEKESYVHR 329
Query: 423 AGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPS 466
GRT RAG+ G+ T + E KR +++ S P + PS
Sbjct: 330 TGRTGRAGKKGKAITFVTPYE-KRMLSEIEEYIGFSIPTSAPPS 372
>gi|424036922|ref|ZP_17775835.1| type III restriction enzyme, res subunit, partial [Vibrio cholerae
HENC-02]
gi|408896112|gb|EKM32294.1| type III restriction enzyme, res subunit, partial [Vibrio cholerae
HENC-02]
Length = 341
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 130/400 (32%), Positives = 187/400 (46%), Gaps = 72/400 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LD L A+ MG +Q E I L RD+ ++PTG+GKT ++ LP +Q L
Sbjct: 10 LDQNLLEAIDEMGYERPTKIQA----EAIPQALDGRDILASAPTGTGKTAAFVLPALQYL 65
Query: 95 SN---RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
+ R R L++ PTR+LA+QV D A+A L++ G
Sbjct: 66 QDFPRRKPGPARILILTPTRELAMQVADQARALAKNTKLNIFTITG-------------- 111
Query: 152 PKLEAGICY-DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 210
G+ Y + D+L Q DI+VATPGRL ++I+A R F + +L++DE DR+L
Sbjct: 112 -----GVQYQEHADILATTQ---DIVVATPGRLREYIDAER-FDCRAIEWLILDEADRML 162
Query: 211 REAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270
+ PTV +L+ NE R+ T L SA T+ GVE GF
Sbjct: 163 DMGFA---PTVDRLS---NECRWR-KQTLLFSA-----TLEGKGVE-GF----------- 198
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL 330
+A L +P A++D PL R K+ + E KL L + Q+
Sbjct: 199 --TADLLNEP---AEIDAKSPL-----RERKKIAQWYHRAD-DAEHKLALLKHIITEQA- 246
Query: 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 390
E+ IVF + E RL L +I G Q R+ + FREG + VL+
Sbjct: 247 --ERTIVFLKTRE---RLAELRAQLESAQIPCSWIQGEMPQDRRNNAISRFREGTVNVLL 301
Query: 391 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG 430
++D RG+D+ V++V+NYD P Y+HR GRTARAG
Sbjct: 302 ATDVAARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAG 341
>gi|254462976|ref|ZP_05076392.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium
HTCC2083]
gi|206679565|gb|EDZ44052.1| ATP-dependent RNA helicase RhlE [Rhodobacteraceae bacterium
HTCC2083]
Length = 495
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 128/434 (29%), Positives = 195/434 (44%), Gaps = 83/434 (19%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LDP++ A+ + G S P+Q + I P L RD+ + TG+GKT S+ LP++ L
Sbjct: 9 LDPKVLKAIDDAGYESPTPIQ----EGAIPPALEGRDVLGIAQTGTGKTASFTLPMITML 64
Query: 95 S-NRA-VRCLRALVVLPTRDLALQVKDVFAAIAP-AVGLSVGLAVGQSSIADEISELIKR 151
RA R R+LV+ PTR+LA QV + F LS L +G
Sbjct: 65 GKGRARARMPRSLVLCPTRELAAQVAENFDTYTKYHKKLSKALLIG-------------- 110
Query: 152 PKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLL 210
G+ + +D L + VD+L+ATPGRL+DH+ RG L + +VVDE DR+L
Sbjct: 111 -----GVSFKEQDRL--IDKGVDVLIATPGRLLDHVE--RGKLLLTGVQVMVVDEADRML 161
Query: 211 REAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270
F+P +ER F P+ R +
Sbjct: 162 DMG-------------------------FIPD------------IERIFGLTPFTRQT-L 183
Query: 271 VLSATLTQDPNKLAQLDLHHPLFL------TTGETRYKLPERLESYKLICESKLKPLYLV 324
SAT+ + ++ L +P + T E ++ + + E K L
Sbjct: 184 FFSATMAPEIERITNTFLSNPARVEVARQATASENIEQVVMMFKGSRKDREGTEKRKALR 243
Query: 325 ALLQSLGEE--KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR 382
L+ + G+ I+F + + L +G I G QS R+KTL FR
Sbjct: 244 KLIDAEGDACTNAIIFCNRKMDVDVVAKSLKKYGYDAAPI---HGDLDQSQRTKTLDGFR 300
Query: 383 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD 442
EG ++ LV+SD RG+DV V++V N+D P++ + Y+HR GRT RAG+ G+ +
Sbjct: 301 EGGLRFLVASDVAARGLDVPSVSHVFNFDVPSHAEDYVHRIGRTGRAGRDGKAVMICVPR 360
Query: 443 EVKRF---KKLLQK 453
+ K F +KL+QK
Sbjct: 361 DEKNFDAIEKLIQK 374
>gi|39996017|ref|NP_951968.1| ATP-dependent RNA helicase RhlE [Geobacter sulfurreducens PCA]
gi|39982782|gb|AAR34241.1| ATP-dependent RNA helicase RhlE [Geobacter sulfurreducens PCA]
Length = 447
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 120/408 (29%), Positives = 183/408 (44%), Gaps = 71/408 (17%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96
P + + G + P+Q + I + RD+ + TG+GKT ++ALPI+ L
Sbjct: 10 PAVATGIAAAGYETPTPIQA----QAIPAVMAGRDVMGLAQTGTGKTAAFALPILHRLQQ 65
Query: 97 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 156
+RALV+ PTR+LA Q+ D F + +G+ + ++ +
Sbjct: 66 GERGRVRALVIAPTRELAEQINDSF------------VTLGRQTRLRSVT-------VYG 106
Query: 157 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 216
G+ +P+ +Q+L++ +++VA PGRL+DHI A L L LV+DE D++
Sbjct: 107 GVGVNPQ--VQKLKAGAEVVVACPGRLLDHI-AQGTIDLSRLEVLVLDEADQMF------ 157
Query: 217 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 276
G L IRR K P PR ++ SAT+
Sbjct: 158 --------------------------DMGFLPDIRRV-----LKHLP-PRRQTLLFSATM 185
Query: 277 TQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLI-CESKLKPLYLVALLQSLGEEKC 335
D LAQ L P+ + G P ++ L E LK L+ LL+ E
Sbjct: 186 PIDIRTLAQDILVDPVTVQVGTV---APAVTVAHALYPVEQHLKTPLLLELLRHTDTESV 242
Query: 336 IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 395
++FT + RL L G + G Q+ R L FR+G Q+LV++D
Sbjct: 243 LIFTRTKHRAKRLGEQLEKAG---YRAASLQGNLSQNRRQAALDGFRDGTFQILVATDIA 299
Query: 396 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443
RG+DV V++V+NYD P + YIHR GRT RA + G FTL+ D+
Sbjct: 300 ARGIDVSQVSHVINYDIPDTAEAYIHRIGRTGRAARSGDAFTLVTSDD 347
>gi|255080620|ref|XP_002503883.1| predicted protein [Micromonas sp. RCC299]
gi|226519150|gb|ACO65141.1| predicted protein [Micromonas sp. RCC299]
Length = 754
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 122/433 (28%), Positives = 207/433 (47%), Gaps = 62/433 (14%)
Query: 38 RLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPI---VQTL 94
++K A+Q +G + P+Q+A +I GL +RD+ + TGSGKT ++ +P+ +Q L
Sbjct: 332 QVKRAIQKVGYAKPSPIQMA----SIPIGLLKRDVIGIAETGSGKTCAFVVPMLAYIQEL 387
Query: 95 ----SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIK 150
A ALV+ PTR+LA Q+++ A + V VG SI
Sbjct: 388 PPMTDEVAALGPYALVMAPTRELAQQIEEETVKFAQFMNYRVASVVGGQSIE-------- 439
Query: 151 RPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLC-YLVVDETDRL 209
E G +L+ +I++ TPGR++D + R +T+ C Y+V+DE DR+
Sbjct: 440 ----EQGF---------KLRRGCEIVIGTPGRIIDVLE--RRYTVLQQCNYIVLDEADRM 484
Query: 210 LREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVK 269
+ ++ P V+ + S A + P + I G+E K Y R+
Sbjct: 485 IDMGFE---PQVISVMDS------MSAESLKPEE--EAEKIDEQGLEASLGTK-Y-RMTY 531
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329
M SAT+ KLA+ + +P +T G + K + ++ S KP L +L
Sbjct: 532 M-FSATMPPSVEKLARKYMRNPAVVTIG-SAGKTSDLIKQIVQWTTSNQKPAQLELVLSQ 589
Query: 330 LGEEKCIVFTSS---VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 386
+ + I+F ++ V+ LC + + + G + Q R ++L+ F++G+
Sbjct: 590 YPDTQAIIFVNTKRVVDHVSNLCFKMGY------SVGAIHGGKSQDQREESLRGFKQGEY 643
Query: 387 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK- 445
+LV++D RG+DV+G++ VVNY+ P I+ Y HR GRT RAG+ G + L ++
Sbjct: 644 DILVATDVAGRGIDVKGIDLVVNYEMPLVIENYTHRIGRTGRAGRQGTAVSFLTSEDTDV 703
Query: 446 --RFKKLLQKADN 456
K+LL + N
Sbjct: 704 MYELKELLTNSGN 716
>gi|408483664|ref|ZP_11189883.1| ATP-dependent RNA helicase RhlB [Pseudomonas sp. R81]
Length = 487
Score = 138 bits (348), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 127/442 (28%), Positives = 191/442 (43%), Gaps = 75/442 (16%)
Query: 10 PVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFE 69
PV+PW V E H L P L A+Q++G P+Q V +G L
Sbjct: 80 PVIPWKLEDFVVEPQEGKTRFHDFKLAPELMHAIQDLGFPYCTPIQAQV----LGFTLAG 135
Query: 70 RDLCINSPTGSGKTLSYALPIVQTL------SNRAVRCLRALVVLPTRDLALQVKDVFAA 123
+D + TG+GKT ++ + I+ L R + RAL++ PTR+L +Q+ A
Sbjct: 136 KDAIGRAQTGTGKTAAFLISIITQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAD 195
Query: 124 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL 183
+ GL+V VG ++ LEA C DILVATPGRL
Sbjct: 196 LTKYTGLNVMTFVGGMDFDKQLKH------LEARHC--------------DILVATPGRL 235
Query: 184 MDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSA 243
+D N L+ + +V+DE DR+L + +P V Q+ R
Sbjct: 236 LD-FNQRGDVHLDMVEVMVLDEADRMLDMGF---IPQVRQIIR----------------- 274
Query: 244 FGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKL 303
+ P ++ SAT T+D LA+ P + E
Sbjct: 275 ----------------QTPPKSERQTLLFSATFTEDVMNLAKQWTTDPSIVEI-EAENVA 317
Query: 304 PERLES--YKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIK 361
E +E Y + K K LY L+ G E+ +VF + + R+ L G +
Sbjct: 318 SENVEQHIYAVAGADKYKLLY--NLVNDNGWERVMVFANRKDEVRRIEERLVRDG---VN 372
Query: 362 IKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIH 421
+ SG Q R KTL+ FREGKI+VLV++D RG+ ++G+++V+N+ P Y+H
Sbjct: 373 AAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVH 432
Query: 422 RAGRTARAGQLGRCFTLLHKDE 443
R GRT RAG G + +D+
Sbjct: 433 RIGRTGRAGAAGVSISFAGEDD 454
>gi|198431984|ref|XP_002127467.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 31
[Ciona intestinalis]
Length = 728
Score = 138 bits (348), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 129/425 (30%), Positives = 189/425 (44%), Gaps = 96/425 (22%)
Query: 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR-----ALVVLPTRDLALQVKDVFAAI 124
+D I S TGSGKT++YAL +VQ L R R ALV +PTR+LALQ +VF+ +
Sbjct: 180 KDALIRSQTGSGKTIAYALAVVQNLQGLVPRITRMDGPAALVFVPTRELALQSYEVFSRL 239
Query: 125 APAVGLSVGLAV--GQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGR 182
V V V GQ KR +A L+ +I+V+TPGR
Sbjct: 240 TLPVRRIVATCVVGGQ-----------KRKSEKA-----------RLRKGSNIIVSTPGR 277
Query: 183 LMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPS 242
+DHI T +L + +++ DE DRLL +Q + +L T +
Sbjct: 278 FIDHIENTHCLSLAKVKWIIFDEADRLLDMGFQKDINKIL---------------TAVKE 322
Query: 243 AFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT--GETR 300
G+ + + ++LSATLT+ L L L +P+ + T G+ +
Sbjct: 323 QTGTKQQV-------------------VLLSATLTKGVENLVNLALTNPVHIETEAGKAK 363
Query: 301 YK------------------LPERLESYKLICESKLKPLYLVALLQSL----GEEKCIVF 338
K LP +L I SKL+ + LVA + G+ K +VF
Sbjct: 364 EKNAQIFVDPLTGLNVEKVPLPSKLTQSVTIVPSKLRLVTLVAFINKKCVIEGDGKLLVF 423
Query: 339 TS---SVESTHRLC-----TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 390
S SVE RL L N + ++ + G Q R+ T+ +R K VL+
Sbjct: 424 LSCRDSVEFHFRLLKNMKGVLNNAISDKKLGFFQLHGGMTQPERNSTINGYRCAKSGVLL 483
Query: 391 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
+D +RG+D+ V+ VV + P Y+HR GRTARAG+ G +L EV+ + KL
Sbjct: 484 CTDVASRGLDIPKVDWVVQHTSPGNPVDYVHRVGRTARAGKAGHALLILSPAEVE-YVKL 542
Query: 451 LQKAD 455
L K D
Sbjct: 543 LTKFD 547
>gi|449484526|ref|XP_004156907.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase
21-like [Cucumis sativus]
Length = 715
Score = 138 bits (348), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 118/427 (27%), Positives = 201/427 (47%), Gaps = 58/427 (13%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS------ 95
A++ G S P+Q+A I GL +RD+ + TGSGKT ++ LP++ ++
Sbjct: 309 AVERAGYKSPSPIQMAA----IPLGLQQRDVIGIAETGSGKTAAFVLPMLAYITRLPPIN 364
Query: 96 -NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
A+V+ PTR+LA Q++D + +G+ V VG SI
Sbjct: 365 EENEAEGPYAVVMAPTRELAQQIEDETVKFSHYLGIKVVSIVGGQSIE------------ 412
Query: 155 EAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY 214
E G +++ ++++ATPGRL+D + R L Y+V+DE DR++ +
Sbjct: 413 EQGF---------KIRQGCEVVIATPGRLLDCLE-RRYAVLNQCNYVVLDEADRMIDMGF 462
Query: 215 QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274
+ + VL DA +PS+ ++ + +K R M SA
Sbjct: 463 EPQVMGVL------------DA---MPSS-----NLKPENEDEELDEKKXYRTTYM-FSA 501
Query: 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEK 334
T+ +LA+ L +P+ +T G T K + + + ++ + K L LL +LG++
Sbjct: 502 TMPPAVERLARKYLRNPVVVTIG-TAGKATDLISQHVIMMKESEKFYRLQNLLDNLGDKT 560
Query: 335 CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394
IVF ++ ++ + L+ G ++ G + Q R +L+ FR + VLV++D
Sbjct: 561 AIVFVNTKKNADTVAKNLDKAG---YRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDV 617
Query: 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 454
RG+D+ V +V+NYD P+ I+ Y HR GRT RAG+ G T L + + F L Q
Sbjct: 618 AGRGIDIPDVAHVINYDMPSNIEMYTHRIGRTGRAGKTGVATTFLTLQDSEVFYDLKQML 677
Query: 455 DNDSCPI 461
+ P+
Sbjct: 678 IQSNSPV 684
>gi|449455778|ref|XP_004145628.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 21-like [Cucumis
sativus]
Length = 715
Score = 138 bits (348), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 118/427 (27%), Positives = 201/427 (47%), Gaps = 58/427 (13%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS------ 95
A++ G S P+Q+A I GL +RD+ + TGSGKT ++ LP++ ++
Sbjct: 309 AVERAGYKSPSPIQMAA----IPLGLQQRDVIGIAETGSGKTAAFVLPMLAYITRLPPIN 364
Query: 96 -NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
A+V+ PTR+LA Q++D + +G+ V VG SI
Sbjct: 365 EENEAEGPYAVVMAPTRELAQQIEDETVKFSHYLGIKVVSIVGGQSIE------------ 412
Query: 155 EAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY 214
E G +++ ++++ATPGRL+D + R L Y+V+DE DR++ +
Sbjct: 413 EQGF---------KIRQGCEVVIATPGRLLDCLE-RRYAVLNQCNYVVLDEADRMIDMGF 462
Query: 215 QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274
+ + VL DA +PS+ ++ + +K R M SA
Sbjct: 463 EPQVMGVL------------DA---MPSS-----NLKPENEDEELDEKKIYRTTYM-FSA 501
Query: 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEK 334
T+ +LA+ L +P+ +T G T K + + + ++ + K L LL +LG++
Sbjct: 502 TMPPAVERLARKYLRNPVVVTIG-TAGKATDLISQHVIMMKESEKFYRLQNLLDNLGDKT 560
Query: 335 CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394
IVF ++ ++ + L+ G ++ G + Q R +L+ FR + VLV++D
Sbjct: 561 AIVFVNTKKNADTVAKNLDKAG---YRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDV 617
Query: 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 454
RG+D+ V +V+NYD P+ I+ Y HR GRT RAG+ G T L + + F L Q
Sbjct: 618 AGRGIDIPDVAHVINYDMPSNIEMYTHRIGRTGRAGKTGVATTFLTLQDSEVFYDLKQML 677
Query: 455 DNDSCPI 461
+ P+
Sbjct: 678 IQSNSPV 684
>gi|260820656|ref|XP_002605650.1| hypothetical protein BRAFLDRAFT_232791 [Branchiostoma floridae]
gi|229290985|gb|EEN61660.1| hypothetical protein BRAFLDRAFT_232791 [Branchiostoma floridae]
Length = 449
Score = 138 bits (348), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 195/419 (46%), Gaps = 84/419 (20%)
Query: 43 LQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCL 102
L+ +G + PVQ A I + +D+ + TGSGKTL++ +PI++ L R L
Sbjct: 20 LKELGFQHMTPVQAAC----IPLFMSNKDVAAEAVTGSGKTLAFVIPILEILQRRT-ETL 74
Query: 103 R-----ALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSS-IADEISELIKRPKLE 155
R AL++ PTR+LALQ+ +V +A + LS L +G + +AD IK+ +
Sbjct: 75 RKHEVGALIITPTRELALQIDEVISAFTKRLPQLSQLLLIGGGNPVAD-----IKKYQ-- 127
Query: 156 AGICYDPEDVLQELQSAVDILVATPGRLMDHINATR-GFT----LEHLCYLVVDETDRLL 210
++ +I+V TPGRL D + G L+ L LV+DE DRLL
Sbjct: 128 --------------ENGANIIVCTPGRLEDILRRKEDGLNLAGHLKSLEVLVLDEADRLL 173
Query: 211 REAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270
++ + T+L ++LP RR G
Sbjct: 174 DMGFEMSINTIL---------------SYLPKQ-------RRTG---------------- 195
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGE------TRYKLPERLESYKLICESKLKPLYLV 324
+ SAT T++ L + L +P+ +T E + + P L++ ++C S K +LV
Sbjct: 196 LFSATQTKEVEALVRAGLRNPVRITVKEKNVAENVQQRTPASLDNLYMMCRSDEKFNHLV 255
Query: 325 ALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 384
A L+S G EK +VF S+ + L + ++ G +Q R+K FR+
Sbjct: 256 AFLRSHGNEKHMVFFSTCAGVDYFSSALRELLK-NTRVMSIHGKMKQK-RNKIFAQFRQA 313
Query: 385 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443
+ VLV +D M RG+D+ VN V+ +D P+ ++HR+GRTAR G+ G L +E
Sbjct: 314 ESGVLVCTDVMARGVDIPEVNWVLQFDPPSNASAFVHRSGRTARMGREGSAVVFLLPEE 372
>gi|153826515|ref|ZP_01979182.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MZO-2]
gi|149739695|gb|EDM53902.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MZO-2]
Length = 423
Score = 138 bits (348), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 127/415 (30%), Positives = 195/415 (46%), Gaps = 82/415 (19%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LDP L A++ MG S P QV E I L RD+ ++PTG+GKT ++ +P +Q L
Sbjct: 10 LDPILLEAIEEMGFSR--PTQVQA--EAIPQALDGRDVLASAPTGTGKTAAFVIPALQYL 65
Query: 95 SN---RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
+ R R L++ PTR+LA+QV + A+A L++ G
Sbjct: 66 LDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITG-------------- 111
Query: 152 PKLEAGICY-DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 210
G+ Y + D+L Q DI+VATPGRL+++I+A R F + +L++DE DR+L
Sbjct: 112 -----GVQYQEHADILATTQ---DIVVATPGRLLEYIDAER-FDCRAIEWLILDEADRML 162
Query: 211 REAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270
+ PTV +L+ E R+ T L SA T+ GVE GF
Sbjct: 163 DMGFG---PTVDRLS---TECRWR-KQTLLFSA-----TLEGRGVE-GF----------- 198
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRY-----KLPERLESYKLICESKLKPLYLVA 325
+A L +DP A +D P +++ +P ++E K I +
Sbjct: 199 --TADLLKDP---AHVDAEPPRRERKKISQWYHRADDMPHKVELLKKILTEQ-------- 245
Query: 326 LLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 385
E+ IVF + E RL L + +I G Q R+ + FREG
Sbjct: 246 ------AERSIVFLKTRE---RLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGD 296
Query: 386 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 440
+ +L+++D RG+DV +++V+N+D P Y+HR GRT RAG+ G +L+
Sbjct: 297 VNILLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVE 351
>gi|357505253|ref|XP_003622915.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355497930|gb|AES79133.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 798
Score = 138 bits (348), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 126/467 (26%), Positives = 203/467 (43%), Gaps = 80/467 (17%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L PRL A+ +G P+Q A G +D+ + TGSGKTL++ LPI+Q L
Sbjct: 169 LHPRLMKAIHKLGFKEPTPIQKACVPAAAHQG---KDVIGAAETGSGKTLAFGLPILQRL 225
Query: 95 SNRAVRC--------------------LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGL 134
+ LR+L++ PTR+LALQV A+A + + V
Sbjct: 226 LEEREKAESISGVNGEEAAEKYATTGLLRSLIIAPTRELALQVAKHLKAVAKHINVRVTA 285
Query: 135 AVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194
VG GI PE + L++ +I+VATPGRL + +++
Sbjct: 286 IVG-------------------GIL--PEKQERLLKARPEIVVATPGRLWELMSSGEKHL 324
Query: 195 LE--HLCYLVVDETDRLLREAYQAWLPTVLQLTRSDN---ENRFSDAS------------ 237
+E L + V+DE DR+++ + L +++ + N E+ DA
Sbjct: 325 IELHSLSFFVLDEADRMVQSGHFKELQSIIDMLPMSNISSEDNSKDAQNCVTVSSIQKKK 384
Query: 238 --TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD----PNKLAQLDLHHP 291
T + SA +L R ++RG K + TL++ PN A +DL +P
Sbjct: 385 RQTLVFSATVALSADFRKKLKRGSIQKKQLSTDGLDSIETLSERAGMRPN-AAIIDLTNP 443
Query: 292 LFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTL 351
L ++E + C K +L +L G+ + IVF +S+ + + ++
Sbjct: 444 SILAA---------KIEESFIECTEDDKDAHLYYILTVHGQGRTIVFCTSIAALRHISSI 494
Query: 352 LNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD 411
L G + + +Q R K + FRE +LV++D RG+D+ GV VV+Y
Sbjct: 495 LRILG---VNVWTLHAQMQQRARLKAMDRFRENDNGILVATDVAARGLDIPGVRTVVHYQ 551
Query: 412 KPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDS 458
P + Y+HR+GRTARA G L+ E +F L + D+
Sbjct: 552 LPHSAEVYVHRSGRTARASAEGCSIALISPKETSKFASLCKSFSKDN 598
>gi|440295520|gb|ELP88433.1| DEAD box ATP-dependent RNA helicase, putative [Entamoeba invadens
IP1]
Length = 672
Score = 138 bits (348), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 115/466 (24%), Positives = 197/466 (42%), Gaps = 81/466 (17%)
Query: 42 ALQNMGISSL---------FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQ 92
Q+MG+S F V + ++ I + D+ + TGSGKT +Y +PI++
Sbjct: 13 GFQSMGLSKHVLQGILHKGFKVPTPIQRKAIPAIMTGVDVIAMARTGSGKTAAYLVPIIE 72
Query: 93 TLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
L + +R++V+ PTR+LALQ VF + L L +G S + ++ L K P
Sbjct: 73 KLGFHSEDGVRSIVICPTRELALQTVKVFNELTFKTNLRASLIIGGSKLYEQFENLEKNP 132
Query: 153 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE 212
DI+VATPGRL I + +L+ + + DE D + +
Sbjct: 133 ---------------------DIIVATPGRLT-FILESANISLQRVDIVCFDEADMMFEQ 170
Query: 213 AYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSL--KTIRRCGVERGFKDKPYPRLVKM 270
+ + +++L + F S +P + G KT++R P ++++
Sbjct: 171 GFSEQISDIVRLLPLSRQ--FLLFSATIPQSLGVFLKKTLKR------------PEIIRL 216
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL---ESYKLICESKLKPLYLVALL 327
L+ D L + H G + L E++ E + C ++ + YL ALL
Sbjct: 217 DTEDKLSPD---LENIFYHVKEVEKDGHLLWLLLEKIPKEEQTVIFCATRHEVEYLGALL 273
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
+ I+F G Q R LK FR + +
Sbjct: 274 KQYKVNSSILF----------------------------GKADQQDREINLKKFRNDENK 305
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 447
++ +D RG+D+ ++NV+NYD P+ K YIHR GR ARAG++G C+ + +E+
Sbjct: 306 IMFVTDVAARGVDIPNLDNVINYDFPSSAKLYIHRCGRVARAGRIGTCYNFVQTEEMGYL 365
Query: 448 KKLLQKADNDSCPIHSIPSSLIESLRPVYKSVRGGISDEAFWKVGC 493
K L A + PI ++P ++ + + D + K+G
Sbjct: 366 KDLEVFAMDKEVPIGNVPREYVDPVLSRLDQLLDANYDLNYLKIGA 411
>gi|269965345|ref|ZP_06179465.1| ATP-dependent RNA helicase, DEAD box family [Vibrio alginolyticus
40B]
gi|269829991|gb|EEZ84220.1| ATP-dependent RNA helicase, DEAD box family [Vibrio alginolyticus
40B]
Length = 447
Score = 138 bits (348), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 120/453 (26%), Positives = 201/453 (44%), Gaps = 82/453 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIV-QT 93
LD RL L++ F + Q+ I + +DL +S TGSGKTL++ LP++ ++
Sbjct: 12 LDNRLLKNLKHYD----FKKATDIQQQAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHKS 67
Query: 94 LSNRAVRCL--RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
L ++ RA+++ PTR+LA QV ++ + L +G + D++ L +
Sbjct: 68 LKTKSFSAKDPRAVILAPTRELAKQVYGELRSMLAGLSYEAALILGGENFNDQVKALRRY 127
Query: 152 PKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 211
PK +VATPGRL DH++ R L+ L L++DE DR+L
Sbjct: 128 PKF---------------------IVATPGRLADHLD-HRSLYLDGLETLILDEADRMLD 165
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
F P L+ I + R R ++
Sbjct: 166 LG-------------------------FAPE----LRRIHKAAKHR--------RRQTLM 188
Query: 272 LSATLTQ-DPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL 330
SATL D N++A L+ P + G + + + + + L K L +L
Sbjct: 189 FSATLDHADVNEIAAEMLNAPKRIAIGVSNEEHKDITQKFYLCDHLDHKEAILDRVLSEA 248
Query: 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 390
+ I+FT++ + T RL LN E ++K SG Q+ R+ + F ++LV
Sbjct: 249 EYRQVIIFTATRDDTERLTEKLN---EKKLKAVALSGNLNQTQRNTIMSQFERAVFKILV 305
Query: 391 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK---DEVKRF 447
++D +RG+D+ V +V+N+D P + + Y+HR GRT RAG G +L+ D KR
Sbjct: 306 TTDVASRGLDIATVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLVGPKDWDSFKRV 365
Query: 448 KKLLQKADNDSCPIHSIPSSLIESLRPVYKSVR 480
+ LQ+ + S+ E L+ +K ++
Sbjct: 366 EAYLQQ---------DLEFSVFEDLKGKFKGLK 389
>gi|15827355|ref|NP_301618.1| ATP-dependent RNA helicase [Mycobacterium leprae TN]
gi|221229833|ref|YP_002503249.1| ATP-dependent RNA helicase [Mycobacterium leprae Br4923]
gi|13092904|emb|CAC30321.1| putative ATP-dependent RNA helicase [Mycobacterium leprae]
gi|219932940|emb|CAR70906.1| putative ATP-dependent RNA helicase [Mycobacterium leprae Br4923]
Length = 544
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 119/414 (28%), Positives = 189/414 (45%), Gaps = 64/414 (15%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-NRAVR 100
AL GI F +Q + T+ L D+ + TG GKT ++ +P++Q +S R
Sbjct: 46 ALAERGIQQPFAIQ----ELTLPLALAGDDVIGQARTGMGKTFAFGVPLLQRISVTTTAR 101
Query: 101 CL----RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 156
L R LVV+PTR+L LQV D A +A + AD+ + +
Sbjct: 102 PLSGAPRGLVVVPTRELCLQVADDLATVAKYL------------TADDDNRRFSVVSIYG 149
Query: 157 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 216
G Y+P+ ++ LQ+ D++V+TPGRL+D L L LV+DE D +L +
Sbjct: 150 GRAYEPQ--IEALQTGADVVVSTPGRLLDLCQQGH-LQLSGLSVLVLDEADEMLDLGFFP 206
Query: 217 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 276
+ +L +D ++ A+ +P +L R F D+P
Sbjct: 207 DIERLLGQIPTDRQSMLFSAT--MPDPIITLA--------RTFMDQPI---------HIR 247
Query: 277 TQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCI 336
+ P+ LA D TT + Y+ L+ +LI +LQ+ G +
Sbjct: 248 AEAPHSLAVHD-------TTQQFVYRA-HALDKVELISR----------ILQARGRGATM 289
Query: 337 VFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT 396
+FT + + ++ LN G + G Q R L+AFR G + VLV++D
Sbjct: 290 IFTRTKRTAQKVTNELNERG---FAVGAVHGDLGQIARENALEAFRTGNVDVLVATDVAA 346
Query: 397 RGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
RG+D++ V +V+NY P K Y+HR GRT RAG+ G TL+ DE+ R++ +
Sbjct: 347 RGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGVAVTLVDWDELHRWETI 400
>gi|340053603|emb|CCC47896.1| putative ATP-dependent RNA helicase [Trypanosoma vivax Y486]
Length = 768
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 118/431 (27%), Positives = 200/431 (46%), Gaps = 66/431 (15%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--- 98
A+ ++G S PVQV + G D+C + TGSGKT ++ LP++ TL R+
Sbjct: 145 AVGHLGFFSPTPVQVQAIPAILDGG----DVCARAVTGSGKTAAFLLPVLHTLLTRSPVK 200
Query: 99 -------VRCLRALVVLPTRDLALQVKDVFAAIAP-AVGLSVGLAVGQSSIADEISELIK 150
R +RAL+++P+R+L +Q + V + GL+V LA+G
Sbjct: 201 QAQTCGKRRFVRALILVPSRELGMQCQHVLQQLLTFTTGLTVALAIG------------- 247
Query: 151 RPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG----FTLEHLCYLVVDET 206
G+ ++ L++ DIL+ATPGRL+D ++ +G + + +V+DE
Sbjct: 248 ------GVAQSAQEAA--LEAIPDILIATPGRLVDLLHNYKGPHGSLDVTGVEIVVLDEC 299
Query: 207 DRLLREAYQAWLPTVLQLTRSDNENR----FSDASTFLPSAFGSLKTIRRCGVERGFK-- 260
D+LL + + +L+ R E R FS T + F V+ G
Sbjct: 300 DKLLTATLKDQVEDILK--RVPEETRQVLMFSATMTQVVDEFAKEHLFEPKNVDVGHVAL 357
Query: 261 ----DKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICES 316
+ + R+ + +++ T + N +++ ++ R + + + + C+
Sbjct: 358 QSNLRQQFVRIRMLPVTSVHTHENNSATKMEAVDKENVSLKRGRCSVADGADQH---CQG 414
Query: 317 K--------LKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL 368
+ +K YLVAL EK ++FT +THRL L N G + E G
Sbjct: 415 EDAAEHVTIVKSRYLVALCLRYFREKTMIFTRYRSTTHRLNLLFNAVG---LPSVELQGN 471
Query: 369 QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 428
Q+Q R +L+ F G+ L S+D +RG+D++ V V+N+D P + YIHR GRTAR
Sbjct: 472 QQQEERFLSLEKFTSGEASYLFSTDVASRGLDIKNVCTVINFDLPPTLTAYIHRVGRTAR 531
Query: 429 AGQLGRCFTLL 439
G+ G +L+
Sbjct: 532 IGESGTAVSLV 542
>gi|47228482|emb|CAG05302.1| unnamed protein product [Tetraodon nigroviridis]
Length = 599
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 130/444 (29%), Positives = 190/444 (42%), Gaps = 95/444 (21%)
Query: 43 LQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCL 102
L + S + PVQ A I + +D+ + TGSGKTL++ +PI++ L R +
Sbjct: 24 LGELKFSHMTPVQSAC----IPLFMSNKDVAAEAVTGSGKTLAFVIPIIELLLKREEKLK 79
Query: 103 R----ALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAG 157
+ ALV+ PTR+LALQ+ V + L +G S+
Sbjct: 80 KMQVGALVITPTRELALQISQVMEQFLQRFPQFTQILLIGGSNPI--------------- 124
Query: 158 ICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCY------LVVDETDRLLR 211
EDV + +I++ATPGRL D + L+ C+ LV+DE DRLL
Sbjct: 125 -----EDVEKFKDQGANIVIATPGRLEDMFK-RKADGLDLACWVKSLEVLVLDEADRLLD 178
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
++A L +L G L RR G+
Sbjct: 179 MGFEASLNAIL----------------------GHLPKQRRTGL---------------- 200
Query: 272 LSATLTQDPNKLAQLDLHHPLFLTTGE------TRYKLPERLESYKLICESKLKPLYLVA 325
SAT TQ+ KL + L +P+ +T E K P RL +Y IC S+ K +LVA
Sbjct: 201 FSATQTQELEKLVRAGLRNPVRITVKEKGAAASAVQKTPSRLSNYYTICRSEDKFNHLVA 260
Query: 326 LLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGL----QRQSVRSKTLKA 380
L+ EK +VF S+ C + +FG L IK+ + + + R+K
Sbjct: 261 FLRQHKHEKNLVFFST-------CACVEYFGRALETLIKKANVCCIHGKMKDKRNKIFAE 313
Query: 381 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 440
FR K +LV +D M RG+D+ VN V+ YD P+ ++HR GRTAR G G L
Sbjct: 314 FRSLKSGILVCTDVMARGIDIPDVNWVLQYDPPSSASAFVHRCGRTARIGNQGNALVFLL 373
Query: 441 KDEVKRFKKLLQKADNDSCPIHSI 464
E L + N CP+ +
Sbjct: 374 PMEESYVNFL---SINQKCPLQKM 394
>gi|393246565|gb|EJD54074.1| DEAD-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 595
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 126/412 (30%), Positives = 194/412 (47%), Gaps = 48/412 (11%)
Query: 56 VAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115
AV I P L +D N+ TGSGKT+++ALPI+Q LS ALV+ PTR+LA
Sbjct: 148 TAVQSACIPPLLAGKDCIGNAKTGSGKTIAFALPILQRLSVDPYGIF-ALVLTPTRELAF 206
Query: 116 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDI 175
Q+ D FA + ++G+ + VG + + EL RP I
Sbjct: 207 QIADQFAVLGGSLGIRTAVVVGGMDMMAQAIELCNRPH---------------------I 245
Query: 176 LVATPGRLMDHINATRG--FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRF 233
++ATPGR++DH+N++ + L + +LV+DE DR+L+ + L ++ + +
Sbjct: 246 VIATPGRMVDHLNSSSPDEWNLNRVKFLVLDEADRMLQPTFANELAVLMNAIPKERQTCL 305
Query: 234 SDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ----DPNKLAQLDLH 289
A T P+ T + G E+ F + P ++ V TL Q P+ + ++ L+
Sbjct: 306 FTA-TLTPAIEALANTPPKPGKEKPFVHR-MPAGIETV--ETLKQLYILVPSHVREVYLY 361
Query: 290 HPLF---LTTGETRYKLPE---RLESYKLICESKLKPLYLVALLQSLGEEK------CIV 337
+ L +T R PE + + K SK KP AL G++ I+
Sbjct: 362 YLLRNPPESTHHLRRAAPEPQKKRRNKKDGKSSKPKPQPKKALSSGSGDDAIVQPPPTII 421
Query: 338 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTR 397
FT+ S L LL G +R QRQ R +L F+ + VLV +D R
Sbjct: 422 FTARARSAAYLSELLQTLG-VRATALHSRLTQRQ--RLNSLALFKSCVVPVLVCTDIGAR 478
Query: 398 GMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL-HKDEVKRFK 448
G+D++ V V+N+D P + Y HR GRTARAG+ G + + +DE K K
Sbjct: 479 GLDIDDVALVLNWDMPQEPEEYTHRVGRTARAGRGGVSVSFVTERDEEKVLK 530
>gi|332557965|ref|ZP_08412287.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides WS8N]
gi|332275677|gb|EGJ20992.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides WS8N]
Length = 516
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 125/424 (29%), Positives = 188/424 (44%), Gaps = 95/424 (22%)
Query: 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQT 93
LDPR+ A+Q G + P+Q + I L +D+ + TG+GKT S+ LP++
Sbjct: 8 ALDPRVLKAVQEAGYETPTPIQA----QAIPHALEGKDVLGIAQTGTGKTASFTLPMITI 63
Query: 94 LS-NRA-VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
L RA R R+LV+ PTR+LA QV + F A LS L +G
Sbjct: 64 LGKGRARARMPRSLVLCPTRELAAQVAENFDIYAKHSKLSKALLIG-------------- 109
Query: 152 PKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLL 210
G+ + +D L + VD+L+ATPGRL+DH RG L + +VVDE DR+L
Sbjct: 110 -----GVSFTEQDKL--IDRGVDVLIATPGRLLDHFE--RGKLLLTGVQIMVVDEADRML 160
Query: 211 REAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270
F+P +ER F P+ R +
Sbjct: 161 DMG-------------------------FIPD------------IERIFSLTPFTRQT-L 182
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL------------ 318
SAT+ + ++ FLT G + ++ + + + I E KL
Sbjct: 183 FYSATMAPEIERITNT------FLT-GAVKIEVARQATTSETI-EQKLIQVTPTRKERSF 234
Query: 319 --KPLYLVALLQSLGEE--KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374
K L AL+++ GE I+F + + L G G QS R
Sbjct: 235 ADKRAVLRALIRAEGEACTNAIIFCNRKMDVDVVAKSLKQHG---FNASPIHGDLEQSQR 291
Query: 375 SKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 434
KTL FR+G + +LV+SD RG+D+ V++V N+D P + + Y+HR GRT RAG+ G+
Sbjct: 292 MKTLDGFRDGSLHLLVASDVAARGLDIPAVSHVFNFDVPTHPEDYVHRIGRTGRAGRKGK 351
Query: 435 CFTL 438
+T+
Sbjct: 352 AYTI 355
>gi|156380897|ref|XP_001632003.1| predicted protein [Nematostella vectensis]
gi|156219053|gb|EDO39940.1| predicted protein [Nematostella vectensis]
Length = 432
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 124/435 (28%), Positives = 194/435 (44%), Gaps = 78/435 (17%)
Query: 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQT 93
CL L + + G P+Q +E+I L RD+ + G+GKT +Y +P+++
Sbjct: 53 CLKRELLMGIFEKGFDKPSPIQ----EESIPVALAGRDILARAKNGTGKTAAYLVPLLER 108
Query: 94 LSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPK 153
++ C++ALV++PTR+LALQ + + +G V + G +S+ D+I L +
Sbjct: 109 -TDTTKNCIQALVLVPTRELALQTSQICIELGKHMGAQVMVTTGGTSLKDDILRLYNK-- 165
Query: 154 LEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA 213
V ++VATPGR++D + + LV+DE D+LL
Sbjct: 166 -------------------VHVIVATPGRVLDLMKKKLA-DMSKCQMLVMDEADKLLSMD 205
Query: 214 YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKD----KPYPRLVK 269
++ L Q+ + ENR L SA + R FK+ KPY
Sbjct: 206 FKKMLE---QIIKHLPENR----QILLFSATFPISV-------RDFKEKHLRKPY----- 246
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329
+ N + +L LH G T+Y Y + E K K L L Q
Sbjct: 247 ---------EINLMDELTLH-------GVTQY--------YAFV-EEKQKVHCLNTLFQK 281
Query: 330 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 389
L + I+F +SV+ R+ L EL QS R++ FR+G + L
Sbjct: 282 LQINQSIIFCNSVQ---RVELLARKILELGFSCFYIHARMSQSHRNRVFHDFRQGHCRNL 338
Query: 390 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKK 449
V SD TRG+D++ VN V+N+D P +TY+HR GR+ R G LG L+ D+ K
Sbjct: 339 VCSDLFTRGIDIQSVNVVINFDFPKNSETYLHRIGRSGRFGHLGVAINLITYDDRFDLYK 398
Query: 450 LLQKADNDSCPIHSI 464
+ + D + PI S+
Sbjct: 399 IENELDTEIKPIPSV 413
>gi|239613976|gb|EEQ90963.1| ATP-dependent RNA helicase DBP10 [Ajellomyces dermatitidis ER-3]
Length = 945
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 113/419 (26%), Positives = 189/419 (45%), Gaps = 48/419 (11%)
Query: 42 ALQNMGISSL---------FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQ 92
Q+MG+++ F V + ++TI L ++D+ + TGSGKT ++ +P+++
Sbjct: 87 GFQSMGLNATLLKAITRKGFSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVIPMIE 146
Query: 93 TLSNRAVR-CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
L N + + RAL++ P+R+LALQ V + L L VG S+ ++ +
Sbjct: 147 KLKNHSAKFGSRALILSPSRELALQTLKVVKELGRGTDLKSVLLVGGDSLEEQFEYMAGN 206
Query: 152 PKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 211
P DI++ATPGR + H+ L + Y+V DE DRL
Sbjct: 207 P---------------------DIIIATPGRFL-HLKVEMSLDLSSIRYVVFDEADRLFE 244
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVER------GFKDKPYP 265
+ A L +L S + A+ LP SL R G++ + K P
Sbjct: 245 MGFAAQLTEILHGLPSSRQTLLFSAT--LPK---SLVEFARAGLQEPTLIRLDAESKISP 299
Query: 266 RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVA 325
L + ++ L L LH + + TGET + E+ K + K +
Sbjct: 300 DLQNAFFTVKSSEKEGALLHL-LHEVIKIPTGETEAHKRAKEEA-KNPKKRKRSEFASNS 357
Query: 326 LLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 385
+S E I+FT++ L ++L G + G Q+ R ++ FR G
Sbjct: 358 HKESPTEHSTIIFTATKHHVDYLVSILRISG---FAVSYAYGSLDQTARKIEVQNFRSGI 414
Query: 386 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444
+LV +D RG+D+ ++NV+NYD P+ K ++HR GRTARAG+ G ++L+ + +
Sbjct: 415 THILVVTDVAARGIDIPILSNVINYDFPSQAKIFVHRVGRTARAGKTGWSYSLIRESDA 473
>gi|357495749|ref|XP_003618163.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355493178|gb|AES74381.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 666
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 121/441 (27%), Positives = 202/441 (45%), Gaps = 61/441 (13%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS------ 95
A++ G + P+Q+A +I GL +RD+ + TGSGKT ++ LP++ ++
Sbjct: 262 AVEKAGYKTPSPIQMA----SIPLGLQQRDVIGVAETGSGKTAAFVLPMLSYITRLPPIS 317
Query: 96 -NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
A+V+ PTR+LA Q++D A +G+ V VG SI
Sbjct: 318 EENEAEGPYAVVMAPTRELAQQIEDETVKFAQYMGIKVVSIVGGQSIE------------ 365
Query: 155 EAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY 214
E G +++ +I++ATPGRL+D + R L Y+V+DE DR++ +
Sbjct: 366 EQGF---------KIRQGCEIVIATPGRLIDCLE-RRYAVLNQCNYVVLDEADRMIDMGF 415
Query: 215 QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274
+ + VL DA +PS+ ++ + +K R M SA
Sbjct: 416 EPQVMGVL------------DA---MPSS-----NLKPENEDEELDEKRIYRTTYM-FSA 454
Query: 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEK 334
T+ +LA+ L +P+ +T G T K + + + ++ + K L LL L ++
Sbjct: 455 TMPPGVERLARKYLRNPVVVTIG-TAGKATDLISQHVIMMKESEKNYNLHRLLDQLNDKT 513
Query: 335 CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394
IVF ++ +S L L + ++ G + Q R +L+ FR + VLV++D
Sbjct: 514 AIVFVNTKKSADFLAKNLEGY-----RVTTLHGGKSQDQREISLEGFRTKRYNVLVATDV 568
Query: 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 454
RG+D+ V +V+NYD P I+ Y HR GRT RAG+ G T L + F +L Q
Sbjct: 569 AGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLQDTDVFYELKQML 628
Query: 455 DNDSCPI-HSIPSSLIESLRP 474
+ P+ H + +P
Sbjct: 629 IQSNSPVPHELARHEASKFKP 649
>gi|392403376|ref|YP_006439988.1| DEAD/DEAH box helicase domain protein [Turneriella parva DSM 21527]
gi|390611330|gb|AFM12482.1| DEAD/DEAH box helicase domain protein [Turneriella parva DSM 21527]
Length = 603
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 122/398 (30%), Positives = 182/398 (45%), Gaps = 72/398 (18%)
Query: 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQ----------TLSNRAVRC 101
FP + ETI L RDL + TGSGKTL+Y LPI+Q T V
Sbjct: 21 FPEPTPIQAETIPLALNNRDLIACAKTGSGKTLAYLLPILQFVHEKIEKGETHGEDGVNP 80
Query: 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD 161
ALV+ PTR+L +Q+ + A A GL + G G+ +D
Sbjct: 81 PVALVLAPTRELVVQIAEEAEFFADAAGLKLATIYG-------------------GVDHD 121
Query: 162 PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 221
+ +EL ++VATPGRL+D + L + +V+DE DR+L + + +
Sbjct: 122 KQ--RRELAGGAQLIVATPGRLLDFLRGGEA-NLSKVVRIVLDEADRMLDMGFIDDVRKI 178
Query: 222 LQLTRSDNENRFSDASTFLPS-AFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP 280
L S NEN S F + F +L ++ F +P +++++ L
Sbjct: 179 LSKC-SPNENEERQFSLFSATINFSALYSVWE------FMREPE----EILINPELIDHA 227
Query: 281 NKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTS 340
N +AQ LH L E KLP YL+ L++ E I+FT+
Sbjct: 228 N-IAQEMLH----LGQDE---KLP-----------------YLIQFLENNKLEPVIIFTN 262
Query: 341 SVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMD 400
S + L LNH I S + Q+ R K L F++GK ++LV++D +RG+
Sbjct: 263 SRQYVDVLVKNLNHHN---IAAAGLSSMVTQNKRLKILDDFKDGKFRILVATDVASRGLH 319
Query: 401 VEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 438
+E V V+NYD P +TY+HR GRTARAG+ G+ ++
Sbjct: 320 IEDVQLVINYDIPMDPETYVHRIGRTARAGKTGKAISV 357
>gi|121699880|ref|XP_001268205.1| DEAD box RNA helicase (Hca4), putative [Aspergillus clavatus NRRL
1]
gi|134034070|sp|A1CTZ2.1|DBP4_ASPCL RecName: Full=ATP-dependent RNA helicase dbp4
gi|119396347|gb|EAW06779.1| DEAD box RNA helicase (Hca4), putative [Aspergillus clavatus NRRL
1]
Length = 823
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 118/420 (28%), Positives = 183/420 (43%), Gaps = 68/420 (16%)
Query: 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV---RCLRAL 105
SS F + I L RD+ + TGSGKTL++ +P+++ L R L AL
Sbjct: 66 SSHFKTLTDIQSRAISHALKGRDVLGAAKTGSGKTLAFLVPVLENLYRRQWAEHDGLGAL 125
Query: 106 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 165
++ PTR+LA+Q+ +V I S GL +G S+ +E
Sbjct: 126 ILSPTRELAIQIFEVLRKIGRYHTFSAGLVIGGKSLREE--------------------- 164
Query: 166 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 225
QE ++ILV TPGR++ H++ T F +L LV+DE DR+L +Q + ++
Sbjct: 165 -QERLGRMNILVCTPGRMLQHLDQTALFDTYNLQMLVLDEADRILDLGFQQTVDAIV--- 220
Query: 226 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 285
G L R+ ++ SAT T+ + LA+
Sbjct: 221 -------------------GHLPKERQT----------------LLFSATQTKKVSDLAR 245
Query: 286 LDLHHPLFLTTGET-RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 344
L L P ++ ET P +L+ + +I K L + ++S + K +VF SS +
Sbjct: 246 LSLRDPEYVAVHETASTATPAKLQQHYVIAPLPQKLDILWSFIRSNLKSKTMVFFSSGKQ 305
Query: 345 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 404
+ H + I + G Q+Q R + F + K VL S+D RG+D V
Sbjct: 306 VRFVYESFRHM-QPGIPLMHLHGRQKQGGRLDIMTNFSQAKHCVLFSTDVAARGLDFPAV 364
Query: 405 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSI 464
+ V+ D P TYIHR GRTAR G+ GR L E + +L++ + PI I
Sbjct: 365 DWVIQMDCPEDADTYIHRVGRTARYGRDGRAVLFLDPSEE---EGMLKRLEQKKVPIEKI 421
>gi|260655032|ref|ZP_05860520.1| ATP-dependent RNA helicase [Jonquetella anthropi E3_33 E1]
gi|260630347|gb|EEX48541.1| ATP-dependent RNA helicase [Jonquetella anthropi E3_33 E1]
Length = 590
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 122/434 (28%), Positives = 193/434 (44%), Gaps = 79/434 (18%)
Query: 23 LFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGK 82
LF D PL + P +K L + G PVQ V +G ++RDL + + TGSGK
Sbjct: 6 LFSDFPL-----VAPLIK-ELASRGFDEPTPVQRGV----LGQDDWDRDLVVQARTGSGK 55
Query: 83 TLSYALPIVQTLSNR---AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQS 139
TL++ LP++ L++R + ++AL++ PTR+LA Q+ A+ VG+ + VG
Sbjct: 56 TLAFLLPVLSELASRLFPGRQTVKALILSPTRELAQQIAQEAASFGRLVGIGTAVLVGGM 115
Query: 140 SIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHL 198
+ +IS L+S V + V TPGR++DH+ RG L +
Sbjct: 116 DMDRQIS---------------------SLRSGVALAVGTPGRVLDHVK--RGTLDLSEI 152
Query: 199 CYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERG 258
+V+DE D +L ++ L +LQ + T+L SA + C R
Sbjct: 153 ETVVLDEGDTMLDMGFRDELEAILQAASARKR-------TWLFSATIPQEVTAVC---RR 202
Query: 259 FKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL 318
F P L+ D D+ H +L RY+
Sbjct: 203 FTTNP----------VFLSFDDESSQHSDIVHKAYLVPSSQRYE---------------- 236
Query: 319 KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTL 378
LV +L C++F + T + L G L + + G Q R+ L
Sbjct: 237 ---GLVNVLLWERPSLCLIFCRTRSDTAEVTERLQKEGFLAMPLH---GDMSQRERNTAL 290
Query: 379 KAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 438
+FR G+I VLV+++ RG+DV GV++V+ P ++T++HR+GRT RAG G +
Sbjct: 291 SSFRSGRIPVLVATNVAARGLDVSGVSHVIQLGVPESLETFVHRSGRTGRAGHEGTNLLV 350
Query: 439 LHKDEVKRFKKLLQ 452
L E RFK +++
Sbjct: 351 LTPAESSRFKFMMR 364
>gi|221638948|ref|YP_002525210.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides KD131]
gi|221159729|gb|ACM00709.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides KD131]
Length = 524
Score = 138 bits (347), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 125/424 (29%), Positives = 188/424 (44%), Gaps = 95/424 (22%)
Query: 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQT 93
LDPR+ A+Q G + P+Q + I L +D+ + TG+GKT S+ LP++
Sbjct: 8 ALDPRVLKAVQEAGYETPTPIQA----QAIPHALEGKDVLGIAQTGTGKTASFTLPMITI 63
Query: 94 LS-NRA-VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
L RA R R+LV+ PTR+LA QV + F A LS L +G
Sbjct: 64 LGKGRARARMPRSLVLCPTRELAAQVAENFDIYAKHSKLSKALLIG-------------- 109
Query: 152 PKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLL 210
G+ + +D L + VD+L+ATPGRL+DH RG L + +VVDE DR+L
Sbjct: 110 -----GVSFTEQDKL--IDRGVDVLIATPGRLLDHFE--RGKLLLTGVQIMVVDEADRML 160
Query: 211 REAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270
F+P +ER F P+ R +
Sbjct: 161 DMG-------------------------FIPD------------IERIFSLTPFTRQT-L 182
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL------------ 318
SAT+ + ++ FLT G + ++ + + + I E KL
Sbjct: 183 FYSATMAPEIERITNT------FLT-GAVKIEVARQATTSETI-EQKLIQVTPTRKERSF 234
Query: 319 --KPLYLVALLQSLGEE--KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374
K L AL+++ GE I+F + + L G G QS R
Sbjct: 235 ADKRAVLRALIRAEGEACTNAIIFCNRKMDVDVVAKSLKQHG---FNASPIHGDLEQSQR 291
Query: 375 SKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 434
KTL FR+G + +LV+SD RG+D+ V++V N+D P + + Y+HR GRT RAG+ G+
Sbjct: 292 MKTLDGFRDGSLHLLVASDVAARGLDIPAVSHVFNFDVPTHPEDYVHRIGRTGRAGRKGK 351
Query: 435 CFTL 438
+T+
Sbjct: 352 AYTI 355
>gi|414590429|tpg|DAA41000.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 746
Score = 138 bits (347), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 127/467 (27%), Positives = 205/467 (43%), Gaps = 88/467 (18%)
Query: 22 SLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSG 81
+LF++ PL + K L+ G + + +Q A + L RD+ + TGSG
Sbjct: 62 TLFDELPLSQ------KTKDGLRKAGFTEMSEIQRAA----LPHALCGRDILGAAKTGSG 111
Query: 82 KTLSYALPIVQTLSNR------AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLA 135
KTL++ +P+++ L V C+ ++ PT DLA Q+ +V + S G+
Sbjct: 112 KTLAFVIPLIEKLYRERWGPEDGVGCI---ILSPTNDLAGQIFEVIKKVGQFHNFSGGVI 168
Query: 136 VGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTL 195
VG KR +E + +E ++++ILV TPGRL+ H N T F
Sbjct: 169 VG------------KRKGIE---------IEKERVNSLNILVCTPGRLVQHFNETANFDC 207
Query: 196 EHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGV 255
L LV+DE D++L ++ + ++ + +R+
Sbjct: 208 SQLQLLVLDEADQILDHGFRNQVDAII----------------------SQIPKVRQT-- 243
Query: 256 ERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG-ETRYKLPERLESYKLIC 314
++ SAT T+ LA++ L P +++ E R P+ LE Y +I
Sbjct: 244 --------------LLFSATQTKSVKDLARVSLRDPEYISVHEEARTATPDTLEQYAMIV 289
Query: 315 ESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELR--IKIKEYSGLQRQS 372
+ K L + ++ K IVF SSV+ + + F +LR I +K G +
Sbjct: 290 PLEQKLNMLWSFIKRHLNSKTIVFLSSVKQVKFVYEI---FKKLRPGIPLKCMHGRMKHV 346
Query: 373 VRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL 432
V+ + F E VL S+D +RG+D++ V+ VV D P I YIHR GRTAR +
Sbjct: 347 VQQAIVADFNEA-TSVLFSTDITSRGLDIKNVDWVVQVDCPENIDNYIHRVGRTARYNKK 405
Query: 433 GRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSV 479
G+ L +E +KL KA PIH I E L + +S+
Sbjct: 406 GKSLIFLCPEEEAMLEKL--KATESKIPIH-IRKPKAEQLEQISQSI 449
>gi|50425797|ref|XP_461495.1| DEHA2F26598p [Debaryomyces hansenii CBS767]
gi|49657164|emb|CAG89921.1| DEHA2F26598p [Debaryomyces hansenii CBS767]
Length = 474
Score = 138 bits (347), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 122/428 (28%), Positives = 191/428 (44%), Gaps = 70/428 (16%)
Query: 46 MGI-SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA 104
MGI + F V +E+I L RD+ + G+GKT S+ +P +Q + V ++A
Sbjct: 1 MGIFEAGFEKPSPVQEESIPMALAGRDILARAKNGTGKTASFVIPCLQQARPK-VNKIQA 59
Query: 105 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 164
L+++PTR+LALQ V + +GL + G +S+ D+I L DP
Sbjct: 60 LILVPTRELALQTSQVVRTLGKHLGLQCMVTTGGTSLRDDILRL-----------NDP-- 106
Query: 165 VLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224
V +LV TPGR++D + + + L V+DE D++L ++ + +L
Sbjct: 107 --------VHVLVGTPGRVLD-LASRKVADLSECPLFVMDEADKMLSREFKGIIEQIL-- 155
Query: 225 TRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 284
F P+ SL +P VK + LT K
Sbjct: 156 -------------AFFPTTRQSL-----------LFSATFPLAVKSFMDQHLT----KPY 187
Query: 285 QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 344
+++L L L Y E E KL C L L L + I+F + S
Sbjct: 188 EINLMDELTLRGISQFYAFVE--EKQKLHC--------LNTLFSKLQINQAIIFCN---S 234
Query: 345 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 404
T+R+ L EL Q R+K FR+GK++VLV SD +TRG+D++ V
Sbjct: 235 TNRVELLAKKITELGYSCYYSHAKMPQHARNKVFHEFRQGKVRVLVCSDLLTRGIDIQAV 294
Query: 405 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSI 464
N V+N+D P +TY+HR GR+ R G LG L+ ++ K+ Q+ + I I
Sbjct: 295 NVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLMSWNDRYNLYKIEQELGTE---IKPI 351
Query: 465 PSSLIESL 472
P+++ +SL
Sbjct: 352 PATIDKSL 359
>gi|423199521|ref|ZP_17186104.1| hypothetical protein HMPREF1171_04136 [Aeromonas hydrophila SSU]
gi|404629082|gb|EKB25846.1| hypothetical protein HMPREF1171_04136 [Aeromonas hydrophila SSU]
Length = 406
Score = 138 bits (347), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 124/417 (29%), Positives = 187/417 (44%), Gaps = 72/417 (17%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117
V Q I L RDL + TGSGKTL++ LP++Q L + A+ ++ LV++PTR+LA+QV
Sbjct: 26 VQQLAIPAALAGRDLLALARTGSGKTLAFGLPLLQRL-DPALAEVQGLVLVPTRELAVQV 84
Query: 118 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177
+ A +GL + G A + +EL P+L LV
Sbjct: 85 SEALQGPAAGLGLRLVTLCGGVEQAQQQAELALGPQL---------------------LV 123
Query: 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 237
ATPGRL D + + TL L LV+DE DRLL + W P + L ++ + R
Sbjct: 124 ATPGRLRDLLG-QQLLTLAGLHTLVLDEADRLLEMGF--W-PDIQWLMKAMPDAR----- 174
Query: 238 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 297
+M+ SATL + LA L P + T
Sbjct: 175 ------------------------------QQMLFSATLPAELEALATGLLKEPARVET- 203
Query: 298 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 357
+ R + + +E + K L++LL++ + +VF S+ + + L G
Sbjct: 204 DPRNSVADDIEERLYLVNKSSKVPALISLLKAHEWPQVLVFISARDDADGVARKLAKAG- 262
Query: 358 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417
I + G + Q+VR + L F+ GK++VLV++D M RG+ VE + V+N D PA
Sbjct: 263 --IAVAALHGEKEQAVREQALGDFKAGKVRVLVATDLMARGIHVEALPLVINLDLPASAP 320
Query: 418 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL-------LQKADNDSCPIHSIPSS 467
Y+HR GRTARAG+ G +L E + L AD P+ P+S
Sbjct: 321 VYVHRIGRTARAGRSGLAISLTCHGEADTLAAIRTLTGRELPLADLTGFPVTDKPAS 377
>gi|167769379|ref|ZP_02441432.1| hypothetical protein ANACOL_00705 [Anaerotruncus colihominis DSM
17241]
gi|167668347|gb|EDS12477.1| DEAD/DEAH box helicase [Anaerotruncus colihominis DSM 17241]
Length = 439
Score = 138 bits (347), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 113/383 (29%), Positives = 173/383 (45%), Gaps = 71/383 (18%)
Query: 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR-----CLRALVVLPTR 111
A+ Q+ I P L D+ + TG+GKT ++A+PI+Q L + +RALV+ PTR
Sbjct: 44 AIQQQAIPPALAGHDVLGCAQTGTGKTAAFAIPILQRLDTQCASIKTPCVIRALVLTPTR 103
Query: 112 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 171
+LA+Q+KD F + + L + G G+ P+ + EL+
Sbjct: 104 ELAIQIKDSFQSYGRYMRLRSTVVFG-------------------GVPQTPQ--VDELRR 142
Query: 172 AVDILVATPGRLMDHINATRGFT-LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 230
VDILVATPGRL D I +G L + V+DE DR+L + + V+ + +
Sbjct: 143 GVDILVATPGRLNDLIG--QGIIDLSSVSVFVLDEADRMLDMGFIHDVERVINHLPNKRQ 200
Query: 231 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 290
F A+ +P A M L + DP K+A +
Sbjct: 201 TLFFSAT--MPKAI-------------------------MHLCDRILTDPVKVAVTPVSS 233
Query: 291 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 350
P+ E +E + K L+ LL+ + +VFT + R+
Sbjct: 234 PV------------EAIEQRLYFVDKPNKRRLLIYLLEDVSIVSALVFTFTKHGADRVAR 281
Query: 351 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 410
L G IK + G + Q R + L AF+ G I+VLV++D RG+D++ +++V NY
Sbjct: 282 ELVKAG---IKAQAIHGDKSQGARQRALSAFKNGDIRVLVATDIAARGIDIDELSHVFNY 338
Query: 411 DKPAYIKTYIHRAGRTARAGQLG 433
D P +TY+HR GRT RAG G
Sbjct: 339 DLPNIPETYVHRIGRTGRAGLGG 361
>gi|254510324|ref|ZP_05122391.1| dead/deah box helicase domain protein [Rhodobacteraceae bacterium
KLH11]
gi|221534035|gb|EEE37023.1| dead/deah box helicase domain protein [Rhodobacteraceae bacterium
KLH11]
Length = 455
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 122/415 (29%), Positives = 188/415 (45%), Gaps = 79/415 (19%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+P++ A++ G S P+Q + I L RD+ + TG+GKT S+ LP++ L
Sbjct: 14 LNPKVLKAIEEAGYESPTPIQ----EGAIPAALEGRDVLGIAQTGTGKTASFTLPMITLL 69
Query: 95 S-NRA-VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
+ RA R R+LV+ PTR+LA QV + F A + L+ L +G
Sbjct: 70 ARGRARARMPRSLVLCPTRELAAQVAENFDTYAKHLKLTKALLIG--------------- 114
Query: 153 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE 212
G+ + +D L + VD+L+ATPGRL+DH + L + +VVDE DR+L
Sbjct: 115 ----GVSFKEQDAL--IDRGVDVLIATPGRLLDHFERGK-LLLTGVQIMVVDEADRMLDM 167
Query: 213 AYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVL 272
F+P +ER F P+ R +
Sbjct: 168 G-------------------------FIPD------------IERIFSLTPFTRQT-LFF 189
Query: 273 SATLTQDPNKLAQLDLHHPLFL------TTGETRYKLPERLESYKLICESKLKPLYLVAL 326
SAT+ + ++ L P + T ET + + + E+ K L AL
Sbjct: 190 SATMAPEIERITDTFLSAPTRVEVARQATASETIEQGVVMFKGGRRDREASQKRKTLRAL 249
Query: 327 LQSLGEEKC---IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 383
+ + G+ KC I+F + L +G I G QS R KTL FR+
Sbjct: 250 IDAEGD-KCTNAIIFCNRKTDVDICAKSLKKYGYDAAAI---HGDLDQSQRMKTLDGFRD 305
Query: 384 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 438
G +++LV+SD RG+DV V++V N+D P + + Y+HR GRT RAG+ G+ T+
Sbjct: 306 GTLRLLVASDVAARGLDVPSVSHVFNFDVPGHPEDYVHRIGRTGRAGREGKAITI 360
>gi|225680138|gb|EEH18422.1| ATP-dependent RNA helicase dbp10 [Paracoccidioides brasiliensis
Pb03]
Length = 934
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 115/421 (27%), Positives = 191/421 (45%), Gaps = 52/421 (12%)
Query: 42 ALQNMGISSL---------FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQ 92
Q+MG+++ F V + ++TI L ++D+ + TGSGKT ++ +P+++
Sbjct: 83 GFQSMGLNATLLKAIARKGFSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVIPMIE 142
Query: 93 TLSNRAVR-CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
L + + + RAL++ P+R+LALQ V + L L VG S+ ++ +
Sbjct: 143 KLKSHSAKFGARALIMSPSRELALQTLKVVKELGRGTDLKCVLLVGGDSLEEQFEYMSGN 202
Query: 152 PKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 211
P DI++ATPGR + H+ L + Y+V DE DRL
Sbjct: 203 P---------------------DIIIATPGRFL-HLKVEMSLDLSSIRYVVFDEADRLFE 240
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVER------GFKDKPYP 265
+ A L +L S + A+ LP SL R G++ + K P
Sbjct: 241 MGFSAQLTEILHGLPSSRQTLLFSAT--LPK---SLVEFARAGLQEPTLIRLDAESKISP 295
Query: 266 RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRY--KLPERLESYKLICESKLKPLYL 323
L S ++ L L LH + + TGET + E L + K + K L
Sbjct: 296 DLQNGFFSIKSSEKEGALLHL-LHDIIKIPTGETEAGKRTKEELHNPK---KRKRSDTVL 351
Query: 324 VALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 383
+ +S E I+FT++ L ++L G + G Q+ R ++ FR
Sbjct: 352 KSHKESPTEHSTIIFTATKHHVDYLTSVLRQSG---FAVSYAYGSLDQTARKIEVQNFRS 408
Query: 384 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443
G +LV +D RG+D+ ++NV+NYD P+ K ++HR GRTARAG+ G ++L+ + +
Sbjct: 409 GITHILVVTDVAARGIDIPILSNVINYDFPSQSKIFVHRVGRTARAGRTGWSYSLIRESD 468
Query: 444 V 444
Sbjct: 469 A 469
>gi|410692807|ref|YP_003623428.1| RNA helicase [Thiomonas sp. 3As]
gi|294339231|emb|CAZ87585.1| RNA helicase [Thiomonas sp. 3As]
Length = 488
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 128/413 (30%), Positives = 182/413 (44%), Gaps = 77/413 (18%)
Query: 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPI-- 90
LD R+ A+ +MG L P+Q P L + RD+ + TG+GKT +++LPI
Sbjct: 21 ALDARILRAVSDMGYEKLTPIQAKAI-----PLLLDGRDIMGAAQTGTGKTAAFSLPILQ 75
Query: 91 -----VQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEI 145
T + A +RAL++ PTR+LA QV A A L G
Sbjct: 76 QLLPLASTSVSPARHPVRALMLAPTRELADQVYTNLKAYAKHTPLRCACVFG-------- 127
Query: 146 SELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 205
G+ P+ EL++ VD+LVATPGRL+DH+ A + L + ++V+DE
Sbjct: 128 -----------GMDMAPQKA--ELRTGVDLLVATPGRLLDHLEA-KTVNLGQVQFVVLDE 173
Query: 206 TDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYP 265
DR+L + L +L FLP +L
Sbjct: 174 ADRMLDIGFLPDLQRIL---------------GFLPKQRTTL------------------ 200
Query: 266 RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVA 325
+ SAT + + +LAQ L +PL + +E E K LV
Sbjct: 201 -----LFSATFSTEIKRLAQSYLQNPLLVEVARPNATA-TNVEQRVYQVEEDDKRATLVQ 254
Query: 326 LLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 385
LL+ + IVF +S RL LL G IK G + Q+ R TL+AF+ G+
Sbjct: 255 LLRDNPLPQVIVFVNSRLGAGRLTRLLERDG---IKAAAMHGDKSQAERLTTLEAFKRGE 311
Query: 386 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 438
IQ LV++D RG+D+ + VVNYD P + Y+HR GRT RAG G TL
Sbjct: 312 IQALVATDVAARGLDIAELPGVVNYDVPFSAEDYVHRIGRTGRAGASGLAITL 364
>gi|110680443|ref|YP_683450.1| ATP-dependent RNA helicase [Roseobacter denitrificans OCh 114]
gi|109456559|gb|ABG32764.1| ATP-dependent RNA helicase, putative [Roseobacter denitrificans OCh
114]
Length = 505
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 126/434 (29%), Positives = 199/434 (45%), Gaps = 84/434 (19%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+P++ A+ G + P+Q I P L RD+ + TG+GKT S+ LP++ L
Sbjct: 29 LNPKVLKAIDEAGYETPTPIQAGA----IPPALAGRDVLGIAQTGTGKTASFTLPMITLL 84
Query: 95 S-NRA-VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
+ RA R R+LV+ PTR+LA QV + F + L+ L +G
Sbjct: 85 ARGRARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIG--------------- 129
Query: 153 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLR 211
G+ + +D L + VD+L+ATPGRL+DH RG L + +VVDE DR+L
Sbjct: 130 ----GVSFKEQDKL--IDKGVDVLIATPGRLLDHFE--RGKLLLTGVQIMVVDEADRMLD 181
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
F+P +ER F P+ R +
Sbjct: 182 MG-------------------------FIPD------------IERIFSLTPFTRQT-LF 203
Query: 272 LSATLTQDPNKLAQLDLHHPLFL------TTGETRYKLPERLESYKLICESKLKPLYLVA 325
SAT+ + ++ L P + TT ET + ++ + E K L A
Sbjct: 204 FSATMAPEIERITNTFLSAPERIEVARQATTSETIEQGVLMFKASRKDREGTEKRKVLRA 263
Query: 326 LLQSLGEEKC---IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR 382
L+ + GE KC IVF + + L + I G QS R++TL FR
Sbjct: 264 LIDAEGE-KCTNAIVFCNRKTDVDIVAKSLKKYNYDAAPI---HGDLDQSQRTRTLDGFR 319
Query: 383 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL-LHK 441
+G ++ L++SD RG+DV V++V N+D P + + Y+HR GRT RAG+ G+ + + +
Sbjct: 320 DGSLKFLIASDVAARGLDVPAVSHVFNFDVPGHAEDYVHRIGRTGRAGRDGKAIMICVPR 379
Query: 442 DE--VKRFKKLLQK 453
DE ++ ++L+Q+
Sbjct: 380 DERNLEDIERLVQR 393
>gi|319653101|ref|ZP_08007203.1| hypothetical protein HMPREF1013_03818 [Bacillus sp. 2_A_57_CT2]
gi|317395022|gb|EFV75758.1| hypothetical protein HMPREF1013_03818 [Bacillus sp. 2_A_57_CT2]
Length = 463
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 119/406 (29%), Positives = 183/406 (45%), Gaps = 78/406 (19%)
Query: 38 RLKVALQNMGISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSN 96
+L L + GI P+Q E P + E RD+ + TG+GKT ++ LPI++ L
Sbjct: 12 KLTNILLSHGIGKPTPIQ-----EQAIPAVMEGRDIIAQAQTGTGKTFAFILPILEKLDP 66
Query: 97 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIK-RPKLE 155
AV ++AL+V PTR+LALQ I DE+ +L LE
Sbjct: 67 DAVH-IQALIVTPTRELALQ------------------------ITDEVQKLTAGDDDLE 101
Query: 156 AGICYDPEDV---LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE 212
Y +DV L +L+ V I+V TPGRL+DHI + L +LV+DE D++L
Sbjct: 102 VLAVYGGQDVDKQLNKLKKKVQIVVGTPGRLLDHIK-RKTIDLSQADFLVLDEADQMLHI 160
Query: 213 AYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVL 272
FL VE K+ P R M+
Sbjct: 161 G-------------------------FLDE------------VEDIIKETPGKRQT-MLF 182
Query: 273 SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGE 332
SAT+ + LA+ + P ++ +T+ + ++ + + K L+ L+Q+
Sbjct: 183 SATIPAEIRNLARKHMKEPEYMQIEKTQGP-AQSVKQIAIHTIDRAKQATLMQLIQTHRP 241
Query: 333 EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS 392
++F + +L +L G + E G QS R + +K FR+ ++Q+LV++
Sbjct: 242 YLAVIFCRTKRRVSKLNDVLKSNG---FQCDELHGDLSQSKREQVMKRFRDAELQLLVAT 298
Query: 393 DAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 438
D RG+DVEGV +V NYD P ++Y+HR GRT RAG G T
Sbjct: 299 DVAARGLDVEGVTHVFNYDIPLDPESYVHRIGRTGRAGMKGMAITF 344
>gi|257056836|ref|YP_003134668.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
43017]
gi|256586708|gb|ACU97841.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
43017]
Length = 570
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 121/443 (27%), Positives = 194/443 (43%), Gaps = 78/443 (17%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P L AL +G P+Q A I P L D+ + TG+GKT ++ALP++ +
Sbjct: 23 LRPELLQALAELGYEEPTPIQRA----AIPPLLDGCDVVGQAATGTGKTAAFALPVLHRI 78
Query: 95 SN-----RAVRCLR-----ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADE 144
+ R R R A+V++PTR+LA QV + +G+ V G S++ +
Sbjct: 79 RDGERGERGARAQRGAAPSAVVLVPTRELAAQVCEAMRRYGRRLGVRVLPVYGGQSMSRQ 138
Query: 145 ISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVV 203
L+ L+ VD++VATPGR +DH+ +RG L L +V+
Sbjct: 139 ---------------------LRALEEGVDVVVATPGRALDHL--SRGSLDLSALRMVVL 175
Query: 204 DETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKP 263
DE D +L + + T+L+ T D + A+ +P L V R +D
Sbjct: 176 DEADEMLDMGFAEDIDTILERTPDDRQTMLFSAT--MPPRIAGL-------VRRYLRD-- 224
Query: 264 YPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYL 323
PR +++ + +L D + Q T Y +P KP L
Sbjct: 225 -PRRIELSRAESLDGDAASITQ-------------TAYVVPR-----------GHKPAAL 259
Query: 324 VALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 383
+L E +VF + E RL +N G + + G Q R++ + R
Sbjct: 260 GRVLDIETPEATVVFCRTREEVDRLTETMNGRG---YRAEALHGGMDQHQRNRVVGRLRT 316
Query: 384 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443
G ++V++D RG+D++ + +VVNYD P+ + Y+HR GR RAG+ G TL E
Sbjct: 317 GTADLVVATDVAARGLDIDQLTHVVNYDVPSAPEVYVHRIGRVGRAGRQGSAITLAEPGE 376
Query: 444 VKRFKKLLQKADNDSCPIHSIPS 466
R K +++ PI +P+
Sbjct: 377 -HRMIKAIERVTGQPVPIRKLPT 398
>gi|197105174|ref|YP_002130551.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Phenylobacterium
zucineum HLK1]
gi|196478594|gb|ACG78122.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Phenylobacterium
zucineum HLK1]
Length = 513
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 123/421 (29%), Positives = 187/421 (44%), Gaps = 69/421 (16%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P A+ G ++ P+Q E I L RD+ + TG+GKT ++ LP++ L
Sbjct: 9 LSPATLKAVAETGYTTATPIQA----EAIPMALQGRDVLGIAQTGTGKTAAFTLPMIDRL 64
Query: 95 S-NRA-VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
+ RA R RALV+ PTR+LA QV F A L+ L +G S D+
Sbjct: 65 AAGRAKARMPRALVIAPTRELADQVSASFEKYAMGQKLTWALLIGGVSFKDQ-------- 116
Query: 153 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLR 211
Q+L VD+L+ATPGRL+DH RG + + +VVDE DR+L
Sbjct: 117 -------------EQKLDRGVDVLIATPGRLLDHFE--RGKLLMTGVQIMVVDEADRMLD 161
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
+ L + +LT + + F A+ +P RL K
Sbjct: 162 MGFIPDLERIFKLTPAKKQTLFFSAT--MPPEIT--------------------RLTKQF 199
Query: 272 LSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLG 331
L+ DP +++ P TT ET + R+ S + K K L L+
Sbjct: 200 LN-----DP---VRIEASRPA--TTAETITQYLVRIPS----ADPKAKRTALRELIGRAE 245
Query: 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVS 391
IVF + + L G G Q+ R +TL++FR G++++L +
Sbjct: 246 INNGIVFCNRKTEVDIVAKSLKKHG---FDAAAIHGDLDQATRMRTLESFRNGELKLLCA 302
Query: 392 SDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLL 451
SD RG+D+ V++V N+D P + Y+HR GRT RAG+ G F ++ + K K+L
Sbjct: 303 SDVAARGLDIPAVSHVFNFDVPHHADDYVHRIGRTGRAGRTGEAFMIVTPADSKNLDKVL 362
Query: 452 Q 452
+
Sbjct: 363 K 363
>gi|126461963|ref|YP_001043077.1| DEAD/DEAH box helicase [Rhodobacter sphaeroides ATCC 17029]
gi|126103627|gb|ABN76305.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides ATCC
17029]
Length = 516
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 125/424 (29%), Positives = 188/424 (44%), Gaps = 95/424 (22%)
Query: 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQT 93
LDPR+ A+Q G + P+Q + I L +D+ + TG+GKT S+ LP++
Sbjct: 8 ALDPRVLKAVQEAGYETPTPIQA----QAIPHALEGKDVLGIAQTGTGKTASFTLPMITI 63
Query: 94 LS-NRA-VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
L RA R R+LV+ PTR+LA QV + F A LS L +G
Sbjct: 64 LGKGRARARMPRSLVLCPTRELAAQVAENFDIYAKHSKLSKALLIG-------------- 109
Query: 152 PKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLL 210
G+ + +D L + VD+L+ATPGRL+DH RG L + +VVDE DR+L
Sbjct: 110 -----GVSFTEQDKL--IDRGVDVLIATPGRLLDHFE--RGKLLLTGVQIMVVDEADRML 160
Query: 211 REAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270
F+P +ER F P+ R +
Sbjct: 161 DMG-------------------------FIPD------------IERIFSLTPFTRQT-L 182
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL------------ 318
SAT+ + ++ FLT G + ++ + + + I E KL
Sbjct: 183 FYSATMAPEIERITNT------FLT-GAVKIEVARQATTSETI-EQKLIQVTPTRKERSF 234
Query: 319 --KPLYLVALLQSLGEE--KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374
K L AL+++ GE I+F + + L G G QS R
Sbjct: 235 ADKRAVLRALIRAEGEACTNAIIFCNRKMDVDVVAKSLKQHG---FNASPIHGDLEQSQR 291
Query: 375 SKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 434
KTL FR+G + +LV+SD RG+D+ V++V N+D P + + Y+HR GRT RAG+ G+
Sbjct: 292 MKTLDGFRDGSLHLLVASDVAARGLDIPAVSHVFNFDVPTHPEDYVHRIGRTGRAGRKGK 351
Query: 435 CFTL 438
+T+
Sbjct: 352 AYTI 355
>gi|297826827|ref|XP_002881296.1| hypothetical protein ARALYDRAFT_902447 [Arabidopsis lyrata subsp.
lyrata]
gi|297327135|gb|EFH57555.1| hypothetical protein ARALYDRAFT_902447 [Arabidopsis lyrata subsp.
lyrata]
Length = 731
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 116/412 (28%), Positives = 187/412 (45%), Gaps = 60/412 (14%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS------ 95
A++ G P+Q+A I GL +RD+ + TGSGKT ++ LP++ +S
Sbjct: 325 AVERAGYKKPSPIQMAA----IPLGLQQRDVIGIAETGSGKTAAFVLPMLAYISRLPPMS 380
Query: 96 -NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
A+V+ PTR+LA Q+++ A +G V VG SI
Sbjct: 381 EENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIE------------ 428
Query: 155 EAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY 214
E G+ ++ +I++ATPGRL+D + R L Y+V+DE DR++ +
Sbjct: 429 EQGL---------KITQGCEIVIATPGRLIDCLE-RRYAVLNQCNYVVLDEADRMIDMGF 478
Query: 215 QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274
+ + VL S N K I R + SA
Sbjct: 479 EPQVAGVLDAMPSSN------LKPENEEEELDEKKIYRT---------------TYMFSA 517
Query: 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEK 334
T+ +LA+ L +P+ +T G T K + + + ++ + K L LL LG++
Sbjct: 518 TMPPGVERLARKYLRNPVVVTIG-TAGKTTDLISQHVIMMKESEKFFRLQKLLDELGDKT 576
Query: 335 CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394
IVF ++ ++ + L+ G ++ G + Q R +L+ FR + VLV++D
Sbjct: 577 AIVFVNTKKNCDSIAKNLDKAG---YRVTTLHGGKSQEQREISLEGFRAKRYNVLVATDV 633
Query: 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG--RCFTLLHKDEV 444
+ RG+D+ V +V+NYD P +I+ Y HR GRT RAG+ G F LH EV
Sbjct: 634 VGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRAGKSGVATSFLTLHDTEV 685
>gi|320583039|gb|EFW97255.1| Cytoplasmic DExD/H-box helicase [Ogataea parapolymorpha DL-1]
Length = 451
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 115/429 (26%), Positives = 192/429 (44%), Gaps = 65/429 (15%)
Query: 46 MGI-SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA 104
MGI + F + +E I L RD+ + G+GKT ++ +P ++ L + V ++A
Sbjct: 42 MGIFEAGFEKPSPIQEEAIPVALMGRDILARAKNGTGKTAAFVIPTLEKLKPK-VNKIQA 100
Query: 105 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 164
L+++PTR+LALQ V + +G+ V + G +S+ D+I
Sbjct: 101 LILVPTRELALQTSQVVKTLGAHLGIQVMVTTGGTSLRDDI------------------- 141
Query: 165 VLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYL-VVDETDRLLREAYQAWLPTVLQ 223
L V +LV TPGR++D A+R C + V+DE D++L ++ + +L+
Sbjct: 142 --MRLHEPVHVLVGTPGRVLDL--ASRKLAEFDECRMFVMDEADKMLSREFKNIIEQILK 197
Query: 224 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 283
F P + G G++ + + + + + Q K
Sbjct: 198 ---------------FFPQS--------SSGKGNGYQSLLFSATFPLAVKSFMDQHLYKP 234
Query: 284 AQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVE 343
+++L L L Y E E KL C L L L + I+F +S
Sbjct: 235 YEINLMDELTLKGITQYYAFVE--EKQKLHC--------LNTLFSKLQINQSIIFCNS-- 282
Query: 344 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG 403
T+R+ L EL Q+ R+K FR+GK++ LV SD +TRG+D++
Sbjct: 283 -TNRVELLSKKITELDYSCYYSHAKMPQAARNKVFHEFRQGKVRNLVCSDLLTRGIDIQA 341
Query: 404 VNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHS 463
VN VVN+D P +TY+HR GR+ R G G L++ ++ K+ Q+ + P
Sbjct: 342 VNVVVNFDFPKTAETYLHRIGRSGRFGHFGIAINLINWNDRFNLYKIEQELGTEIKP--- 398
Query: 464 IPSSLIESL 472
IP+ + +SL
Sbjct: 399 IPAEIDKSL 407
>gi|146278024|ref|YP_001168183.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter
sphaeroides ATCC 17025]
gi|145556265|gb|ABP70878.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides ATCC
17025]
Length = 507
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 125/424 (29%), Positives = 189/424 (44%), Gaps = 95/424 (22%)
Query: 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQT 93
LDPR+ A+Q G + P+Q + I L +D+ + TG+GKT S+ LP++
Sbjct: 8 ALDPRVLKAVQEAGYETPTPIQA----QAIPHALEGKDVLGIAQTGTGKTASFTLPMITI 63
Query: 94 LS-NRA-VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
L RA R R+LV+ PTR+LA QV + F A LS L +G
Sbjct: 64 LGKGRARARMPRSLVLCPTRELAAQVAENFDIYAKHSKLSKALLIG-------------- 109
Query: 152 PKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLL 210
G+ + +D L + VD+L+ATPGRL+DH RG L + +VVDE DR+L
Sbjct: 110 -----GVSFTEQDKL--IDRGVDVLIATPGRLLDHFE--RGKLLLTGVQIMVVDEADRML 160
Query: 211 REAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270
F+P +ER F P+ R +
Sbjct: 161 DMG-------------------------FIPD------------IERIFSLTPFTRQT-L 182
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL------------ 318
SAT+ + ++ FLT G + ++ + + + I E KL
Sbjct: 183 FYSATMAPEIERITNT------FLT-GAVKIEVARQATTSETI-EQKLIQITPTRKERSF 234
Query: 319 --KPLYLVALLQSLGEE--KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374
K L AL+++ GE I+F + + L G G QS R
Sbjct: 235 ADKRAVLRALIRAEGEACTNAIIFCNRKMDVDVVAKSLKQHG---FNASPIHGDLDQSQR 291
Query: 375 SKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 434
+KTL FR+G + +LV+SD RG+D+ V++V N+D P + + Y+HR GRT RAG+ G+
Sbjct: 292 TKTLDGFRDGTLHLLVASDVAARGLDIPAVSHVFNFDLPTHPEDYVHRIGRTGRAGRKGK 351
Query: 435 CFTL 438
F++
Sbjct: 352 AFSI 355
>gi|429208395|ref|ZP_19199647.1| ATP-dependent RNA helicase [Rhodobacter sp. AKP1]
gi|428188650|gb|EKX57210.1| ATP-dependent RNA helicase [Rhodobacter sp. AKP1]
Length = 508
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 125/424 (29%), Positives = 188/424 (44%), Gaps = 95/424 (22%)
Query: 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQT 93
LDPR+ A+Q G + P+Q + I L +D+ + TG+GKT S+ LP++
Sbjct: 8 ALDPRVLKAVQEAGYETPTPIQA----QAIPHALEGKDVLGIAQTGTGKTASFTLPMITI 63
Query: 94 LS-NRA-VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
L RA R R+LV+ PTR+LA QV + F A LS L +G
Sbjct: 64 LGKGRARARMPRSLVLCPTRELAAQVAENFDIYAKHSKLSKALLIG-------------- 109
Query: 152 PKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLL 210
G+ + +D L + VD+L+ATPGRL+DH RG L + +VVDE DR+L
Sbjct: 110 -----GVSFTEQDKL--IDRGVDVLIATPGRLLDHFE--RGKLLLTGVQIMVVDEADRML 160
Query: 211 REAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270
F+P +ER F P+ R +
Sbjct: 161 DMG-------------------------FIPD------------IERIFSLTPFTRQT-L 182
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL------------ 318
SAT+ + ++ FLT G + ++ + + + I E KL
Sbjct: 183 FYSATMAPEIERITNT------FLT-GAVKIEVARQATTSETI-EQKLIQVTPTRKERSF 234
Query: 319 --KPLYLVALLQSLGEE--KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374
K L AL+++ GE I+F + + L G G QS R
Sbjct: 235 ADKRAVLRALIRAEGEACTNAIIFCNRKMDVDVVAKSLKQHG---FNASPIHGDLEQSQR 291
Query: 375 SKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 434
KTL FR+G + +LV+SD RG+D+ V++V N+D P + + Y+HR GRT RAG+ G+
Sbjct: 292 MKTLDGFRDGSLHLLVASDVAARGLDIPAVSHVFNFDVPTHPEDYVHRIGRTGRAGRKGK 351
Query: 435 CFTL 438
+T+
Sbjct: 352 AYTI 355
>gi|296135178|ref|YP_003642420.1| DEAD/DEAH box helicase [Thiomonas intermedia K12]
gi|295795300|gb|ADG30090.1| DEAD/DEAH box helicase domain protein [Thiomonas intermedia K12]
Length = 488
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 128/413 (30%), Positives = 182/413 (44%), Gaps = 77/413 (18%)
Query: 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPI-- 90
LD R+ A+ +MG L P+Q P L + RD+ + TG+GKT +++LPI
Sbjct: 21 ALDARILRAVSDMGYEKLTPIQAKAI-----PLLLDGRDIMGAAQTGTGKTAAFSLPILQ 75
Query: 91 -----VQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEI 145
T + A +RAL++ PTR+LA QV A A L G
Sbjct: 76 QLLPLASTSVSPARHPVRALMLAPTRELADQVYTNLKAYAKHTPLRCACVFG-------- 127
Query: 146 SELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 205
G+ P+ EL++ VD+LVATPGRL+DH+ A + L + ++V+DE
Sbjct: 128 -----------GMDMAPQKA--ELRTGVDLLVATPGRLLDHLEA-KTVNLGQVQFVVLDE 173
Query: 206 TDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYP 265
DR+L + L +L FLP +L
Sbjct: 174 ADRMLDIGFLPDLQRIL---------------GFLPKQRTTL------------------ 200
Query: 266 RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVA 325
+ SAT + + +LAQ L +PL + +E E K LV
Sbjct: 201 -----LFSATFSTEIKRLAQSYLQNPLLVEVARPNATA-TNVEQRVYQVEEDDKRATLVQ 254
Query: 326 LLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 385
LL+ + IVF +S RL LL G IK G + Q+ R TL+AF+ G+
Sbjct: 255 LLRDNPLPQVIVFVNSRLGAGRLTRLLERDG---IKAAAMHGDKSQAERLTTLEAFKRGE 311
Query: 386 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 438
IQ LV++D RG+D+ + VVNYD P + Y+HR GRT RAG G TL
Sbjct: 312 IQALVATDVAARGLDIAELPGVVNYDVPFSAEDYVHRIGRTGRAGASGLAITL 364
>gi|332140113|ref|YP_004425851.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Deep
ecotype']
gi|327550135|gb|AEA96853.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Deep
ecotype']
Length = 589
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 131/453 (28%), Positives = 218/453 (48%), Gaps = 78/453 (17%)
Query: 15 MRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFE-RDLC 73
M + VD++ F+D +LP +P L+ AL+ +G P+Q E+I P L E DL
Sbjct: 1 MTTTVDMT-FKDL---NLP--EPILQ-ALEKVGYEKPSPIQA----ESI-PLLLEGHDLL 48
Query: 74 INSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVG 133
+ TG+GKT ++ALP++ + R + LV+ PTR+LA+QV + F A
Sbjct: 49 GQAQTGTGKTAAFALPMLANIDPEQ-RKPQLLVLAPTRELAIQVAEAFQVYA-------- 99
Query: 134 LAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193
S+ IK + G YD + +++L+ V ++V TPGR++DHI +
Sbjct: 100 ----------SFSQKIKVLPVYGGQSYD--NQIRQLKRGVQVVVGTPGRIIDHIK-RKTL 146
Query: 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRC 253
L L YLV+DE D +LR + + +L + + E + + S +P G +K I
Sbjct: 147 DLSELKYLVLDEADEMLRMGFIDDVELIL--SHAPEERQTALFSATMP---GPIKKI--- 198
Query: 254 GVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLI 313
+R KD + ++ V +A+ + + Q+ HH +LE+ I
Sbjct: 199 -TQRYLKDPKHVKIASKVSTASTIR--QRYCQIAPHH---------------KLEALTRI 240
Query: 314 CESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSV 373
E V + + I+F + +T L L+ G ++ +G Q+
Sbjct: 241 ME--------VEVFDGM-----IIFVRTKTATVELADKLSARG---YDVEPLNGDIPQAA 284
Query: 374 RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 433
R +T++ ++GKI +LV++D + RG+DVE V++V+NYD P ++Y+HR GRT RAG+ G
Sbjct: 285 RERTVEKLKQGKIDILVATDVVARGLDVERVSHVINYDIPYDSESYVHRIGRTGRAGRQG 344
Query: 434 RCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPS 466
+ E KR ++K IPS
Sbjct: 345 DAILFISHRE-KRLLFSIEKTTKQPIEAMPIPS 376
>gi|77463091|ref|YP_352595.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides 2.4.1]
gi|77387509|gb|ABA78694.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides 2.4.1]
Length = 518
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 125/424 (29%), Positives = 188/424 (44%), Gaps = 95/424 (22%)
Query: 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQT 93
LDPR+ A+Q G + P+Q + I L +D+ + TG+GKT S+ LP++
Sbjct: 10 ALDPRVLKAVQEAGYETPTPIQA----QAIPHALEGKDVLGIAQTGTGKTASFTLPMITI 65
Query: 94 LS-NRA-VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
L RA R R+LV+ PTR+LA QV + F A LS L +G
Sbjct: 66 LGKGRARARMPRSLVLCPTRELAAQVAENFDIYAKHSKLSKALLIG-------------- 111
Query: 152 PKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLL 210
G+ + +D L + VD+L+ATPGRL+DH RG L + +VVDE DR+L
Sbjct: 112 -----GVSFTEQDKL--IDRGVDVLIATPGRLLDHFE--RGKLLLTGVQIMVVDEADRML 162
Query: 211 REAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270
F+P +ER F P+ R +
Sbjct: 163 DMG-------------------------FIPD------------IERIFSLTPFTRQT-L 184
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL------------ 318
SAT+ + ++ FLT G + ++ + + + I E KL
Sbjct: 185 FYSATMAPEIERITNT------FLT-GAVKIEVARQATTSETI-EQKLIQVTPTRKERSF 236
Query: 319 --KPLYLVALLQSLGEE--KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374
K L AL+++ GE I+F + + L G G QS R
Sbjct: 237 ADKRAVLRALIRAEGEACTNAIIFCNRKMDVDVVAKSLKQHG---FNASPIHGDLEQSQR 293
Query: 375 SKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 434
KTL FR+G + +LV+SD RG+D+ V++V N+D P + + Y+HR GRT RAG+ G+
Sbjct: 294 MKTLDGFRDGSLHLLVASDVAARGLDIPAVSHVFNFDVPTHPEDYVHRIGRTGRAGRKGK 353
Query: 435 CFTL 438
+T+
Sbjct: 354 AYTI 357
>gi|320582192|gb|EFW96410.1| ATP-dependent RNA helicase, putative [Ogataea parapolymorpha DL-1]
Length = 428
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 129/455 (28%), Positives = 204/455 (44%), Gaps = 80/455 (17%)
Query: 37 PRLKV-ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 95
PR V +LQ M I+ +Q A E L RD + TGSGKT+++ P++ S
Sbjct: 10 PRWLVESLQAMKITRPTNIQAACIPEI----LKGRDCIGGAKTGSGKTIAFGAPMLAKWS 65
Query: 96 NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLE 155
LV+ PTR+LA+Q+ D FAA+ V L V L +G S+ D+++ + + P
Sbjct: 66 QDPSGIF-GLVLTPTRELAMQIADQFAALGATVNLKVRLIIGGESMTDQVAMIKENPHF- 123
Query: 156 AGICYDPEDVLQELQSAVDILVATPGRL----MDHINATRGFTLEHLCYLVVDETDRLLR 211
++ATPGRL M++ + RG L+ + YLV+DE DRLL
Sbjct: 124 --------------------IIATPGRLAHIIMENEDECRG--LKRVKYLVLDEADRLLT 161
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
+++ L T + + N+ + F + S+ R KD+P
Sbjct: 162 DSFTDHLQTCFEALPNSNKRQ---TLLFTATVTDSV---------RALKDRPVA------ 203
Query: 272 LSATLTQDPNKLAQLDLHHPLFLTTGET--RYKLPERLESYKLICESKLKPLYLVALL-- 327
P K P+FL + K+P L ++ +K L +L
Sbjct: 204 --------PGK-------QPVFLHELDNVDTVKIPSTLRLLYVLAPVVVKESMLHNILTN 248
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
+ E IVF + E+ L LL H L + QS R+ +L FR G +
Sbjct: 249 EDYKESTAIVFVNRSETAEILRRLLRH---LEVTTTSLHSEMPQSERTNSLHRFRAGAAR 305
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 447
VLV++D +RG+D+ V V+N+D P Y+HR GRTARAG+ G +++ +++ R
Sbjct: 306 VLVATDLASRGLDIPSVELVINFDIPRDPDDYVHRVGRTARAGRKGDAISMVTPNDLSR- 364
Query: 448 KKLLQKADNDSCPIHSIPSS----LIESLRPVYKS 478
+L D + +P S + +SL+ V K+
Sbjct: 365 --ILAIEDRVGVKMEELPLSDNKVIKQSLKAVSKA 397
>gi|226291932|gb|EEH47360.1| ATP-dependent RNA helicase DBP10 [Paracoccidioides brasiliensis
Pb18]
Length = 895
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 115/421 (27%), Positives = 192/421 (45%), Gaps = 52/421 (12%)
Query: 42 ALQNMGISSL---------FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQ 92
Q+MG+++ F V + ++TI L ++D+ + TGSGKT ++ +P+++
Sbjct: 83 GFQSMGLNATLLKAIARKGFSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVIPMIE 142
Query: 93 TLSNRAVR-CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
L + + + RAL++ P+R+LALQ V + L L VG S+ ++ +
Sbjct: 143 KLKSHSAKFGARALIMSPSRELALQTLKVVKELGRGTDLKCVLLVGGDSLEEQFEYMSGN 202
Query: 152 PKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 211
P DI++ATPGR + H+ L + Y+V DE DRL
Sbjct: 203 P---------------------DIIIATPGRFL-HLKVEMSLDLSSIRYVVFDEADRLFE 240
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVER------GFKDKPYP 265
+ A L +L + S + A+ LP SL R G++ + K P
Sbjct: 241 MGFSAQLTEILHVLPSSRQTLLFSAT--LPK---SLVEFARAGLQEPTLIRLDAESKISP 295
Query: 266 RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRY--KLPERLESYKLICESKLKPLYL 323
L S ++ L L LH + + TGET + E L + K + K L
Sbjct: 296 DLQNGFFSIKSSEKEGALLHL-LHDIIKIPTGETEAGKRTKEELHNPK---KRKRSDTVL 351
Query: 324 VALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 383
+ +S E I+FT++ L ++L G + G Q+ R ++ FR
Sbjct: 352 KSHKESPTEHSTIIFTATKHHVDYLTSVLRQSG---FAVSYAYGSLDQTARKIEVQNFRC 408
Query: 384 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443
G +LV +D RG+D+ ++NV+NYD P+ K ++HR GRTARAG+ G ++L+ + +
Sbjct: 409 GITHILVVTDVAARGIDIPILSNVINYDFPSQSKIFVHRVGRTARAGRTGWSYSLIRESD 468
Query: 444 V 444
Sbjct: 469 A 469
>gi|193676312|ref|XP_001947247.1| PREDICTED: probable ATP-dependent RNA helicase DDX31-like
[Acyrthosiphon pisum]
Length = 642
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 126/447 (28%), Positives = 198/447 (44%), Gaps = 76/447 (17%)
Query: 22 SLFEDCPLDHLPCLDPRLKVAL-QNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGS 80
SLF L L + L Q +G++ L VQ +TI +D + S TGS
Sbjct: 99 SLFSTSTYKDLTDLHAHMVANLEQTLGVTKLTTVQ----SQTIPVLQSGKDAMVQSETGS 154
Query: 81 GKTLSYALPIVQTLSN-----RAVRCLRALVVLPTRDLALQVKDVFAAI-APAVGLSVGL 134
GKT +YA+P++++L LRAL++LPTR+LALQ + F + P L G+
Sbjct: 155 GKTFAYAVPLIESLHKIRPKLSRTDGLRALIILPTRELALQTYENFIKLLKPYTWLVPGM 214
Query: 135 AVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194
G E + ++ GI IL+ TPGRL+DH T+ +
Sbjct: 215 FTGGEKRKSE------KARMRKGIT---------------ILIGTPGRLLDHAQNTKSIS 253
Query: 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCG 254
+ L +L++DE DR+L Y+ + ++L + +E+R
Sbjct: 254 FKSLQWLIIDEADRMLDLGYEKDITSILSVV---DEHR---------------------- 288
Query: 255 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL---TTGETRYK---LPERLE 308
D+ PR + LSATL++ +LA L L P+++ + G T + +P+ L
Sbjct: 289 ------DESVPRQTAL-LSATLSEGVQRLAGLSLKDPVYIDASSIGSTDSECMAIPDSLL 341
Query: 309 SYKLICESKLKPLYLVA-LLQSLGE----EKCIVFTSSVESTHRLCTLLNHFGELRIKIK 363
Y ++ KL+ + L LLQ L + K +VF ++ + LL K
Sbjct: 342 QYYVLAPPKLRLVTLSGVLLQKLQKGQISSKTLVFMATQDMVDFYTELLTTVLTCLTMFK 401
Query: 364 EYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRA 423
+ G Q R + K+F+ VL +D +RG+D+ V+ ++ Y+ P Y+HR
Sbjct: 402 LH-GNMTQVERMEVFKSFKAANHGVLFCTDVASRGLDLPLVDRIIQYNAPITPTDYVHRV 460
Query: 424 GRTARAGQLGRCFTLLHKDEVKRFKKL 450
GRTAR GQ G L E KL
Sbjct: 461 GRTARVGQKGEATLFLTPHEAMFIAKL 487
>gi|223590193|sp|A5DLE0.2|DBP8_PICGU RecName: Full=ATP-dependent RNA helicase DBP8
gi|190347673|gb|EDK39993.2| hypothetical protein PGUG_04091 [Meyerozyma guilliermondii ATCC
6260]
Length = 433
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 123/413 (29%), Positives = 184/413 (44%), Gaps = 69/413 (16%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101
AL M I S +Q E I L RD + TGSGKT+++A P++ S
Sbjct: 15 ALAAMKIRSPTSIQA----ECIPQILAGRDCIGGAKTGSGKTIAFAAPMMTKWSEDPF-G 69
Query: 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD 161
+ LV+ PTR+LALQ+ + F A+ ++ + V + VG + + E+ K P
Sbjct: 70 IYGLVLTPTRELALQIAEQFLALGASMNIKVAVVVGGEDMVKQALEIQKSPHF------- 122
Query: 162 PEDVLQELQSAVDILVATPGRLMDHINATRGFT---LEHLCYLVVDETDRLLREAYQAWL 218
++ATPGRL DHI + T L+ + +LV+DE DRLL ++ + L
Sbjct: 123 --------------IIATPGRLADHILNSGDDTVGGLKRIKFLVLDEADRLLSNSFGSDL 168
Query: 219 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ 278
++ DAS F + T R KDKP P K
Sbjct: 169 ERCFKI--------LPDASKRQTLLFTATVT----DAVRALKDKPVPEGKK--------- 207
Query: 279 DPNKLAQLDLHHPLFL--TTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKC- 335
P+F+ + + +P L + S +K YL +L S EK
Sbjct: 208 ------------PVFIHEIVSKDQVAIPATLTISYVFVPSYVKEAYLHNILVSPKYEKAS 255
Query: 336 -IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394
IVF V T+ L +L I++ QS R+ +L FR G +VL+++D
Sbjct: 256 AIVF---VNRTYTAEILRRTLRKLDIRVASLHSEMPQSERTNSLHRFRAGAARVLIATDV 312
Query: 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 447
+RG+D+ V VVN D PA YIHR GRTARAG+ G +++ + +V+R
Sbjct: 313 ASRGLDIPNVELVVNQDIPADPDDYIHRVGRTARAGKKGGSVSIVSEKDVERI 365
>gi|418528845|ref|ZP_13094787.1| hypothetical protein CTATCC11996_04137 [Comamonas testosteroni ATCC
11996]
gi|371454106|gb|EHN67116.1| hypothetical protein CTATCC11996_04137 [Comamonas testosteroni ATCC
11996]
Length = 473
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 122/428 (28%), Positives = 197/428 (46%), Gaps = 84/428 (19%)
Query: 39 LKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL---- 94
L A+ +MG S+ P+Q + I L +D+ + TG+GKT +++LP++Q L
Sbjct: 14 LARAVADMGYESMTPIQA----QAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQRLMRHE 69
Query: 95 ---SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
++ A +RALV+LPTR+LA QV A A L + G
Sbjct: 70 NASASPARHPVRALVLLPTRELADQVAQQIALYAKHTKLRSTVVFG-------------- 115
Query: 152 PKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 211
G+ P+ + EL+ V++LVATPGRL+DHI A + L + Y+V+DE DR+L
Sbjct: 116 -----GMDMKPQTI--ELKKGVEVLVATPGRLLDHIEA-KNVVLNQVEYVVLDEADRMLD 167
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
+ L +L ++LP + +L +
Sbjct: 168 IGFLPDLQRIL---------------SYLPKSRTTL-----------------------L 189
Query: 272 LSATLTQDPNKLAQLDLHHPLFLTTG---ETRYKLPERLESYKLICESKLKPLYLVALLQ 328
SAT + + +LA L P+ + ET + +R YK+ + K + ++L+
Sbjct: 190 FSATFSPEIKRLAGSYLQDPVTIEVARPNETASTVEQRF--YKVTDDDKR--YAIRSVLK 245
Query: 329 SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 388
+ +F++S RL L G ++ G + Q R K L+AF+ G++ +
Sbjct: 246 ERDIRQAFIFSNSKLGCARLTRALERDG---LRAAALHGDKSQDERLKALEAFKAGEVDL 302
Query: 389 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VK 445
LV +D RG+D++ V V NYD P + Y+HR GRT RAG G TL+ + V
Sbjct: 303 LVCTDVAARGLDIKDVPAVFNYDVPFNAEDYVHRIGRTGRAGASGLAVTLVTDHDSRNVA 362
Query: 446 RFKKLLQK 453
+KL++K
Sbjct: 363 DIEKLIKK 370
>gi|323493912|ref|ZP_08099029.1| ATP-dependent RNA helicase [Vibrio brasiliensis LMG 20546]
gi|323311853|gb|EGA65000.1| ATP-dependent RNA helicase [Vibrio brasiliensis LMG 20546]
Length = 419
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 122/453 (26%), Positives = 198/453 (43%), Gaps = 83/453 (18%)
Query: 65 PGLFE-RDLCINSPTGSGKTLSYALPIVQTL----SNRAVRC--LRALVVLPTRDLALQV 117
P + E +D+ + TG+GKT ++ LPI+Q L + R ++ +RALV++PTR+LA QV
Sbjct: 35 PHVLEGKDVLAGAQTGTGKTAAFGLPILQKLIDSDTKRDIQSNDVRALVLVPTRELAQQV 94
Query: 118 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177
D A + V G +S+ + + L DIL+
Sbjct: 95 FDNLTQYAAQTKIKVVAVYGGTSMNVQT---------------------RNLDQGCDILI 133
Query: 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 237
ATPGRL+DH+ + L YLV+DE DR+L + + +LQ
Sbjct: 134 ATPGRLIDHMYC-KNINLHKTEYLVLDEADRMLDMGFMPDIKRILQ-------------- 178
Query: 238 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 297
RC +R + SAT + +A L P+ +
Sbjct: 179 --------------RCNDDRQ----------TLFFSATFDKRIKTIAYRMLEEPVEVQVS 214
Query: 298 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 357
+ E ++ + K K L L+ S ++ +VFT + + + L L G
Sbjct: 215 PSN-STAETVKQMVYPVDKKRKAELLAYLIGSRNWQQVLVFTKTKQGSDALAKELKLDG- 272
Query: 358 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417
IK +G + Q R K L F+ G+++ L+++D RG+D++ + VVN+D P +
Sbjct: 273 --IKAASINGDKSQGARQKALDDFKSGQVRALIATDVAARGLDIQQLEQVVNFDMPYKAE 330
Query: 418 TYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKKLLQKADNDSCP---IHSIPSSLIES 471
Y+HR GRT RAG+ G +L+ +DE + ++LL + P + SLIE
Sbjct: 331 DYVHRIGRTGRAGKEGFAVSLMSRDEEYLLHAIERLL----DTKLPQEWLQGFEPSLIEE 386
Query: 472 LRPVYKSVRGG-ISDEAFWKVGCDLHGVNRVRR 503
+ P R G SD+ K +H NR ++
Sbjct: 387 IEPDKAPRRKGRNSDKRKMKAKLKIHA-NRGKK 418
>gi|254568340|ref|XP_002491280.1| Putative ATP-dependent RNA helicase of the DEAD-box family
[Komagataella pastoris GS115]
gi|238031077|emb|CAY69000.1| Putative ATP-dependent RNA helicase of the DEAD-box family
[Komagataella pastoris GS115]
gi|328352202|emb|CCA38601.1| ATP-dependent RNA helicase [Komagataella pastoris CBS 7435]
Length = 434
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 115/399 (28%), Positives = 184/399 (46%), Gaps = 74/399 (18%)
Query: 60 QETIGPGLFERDLCIN-SPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK 118
QE P + CI + TGSGKT+++A P++ S L++ PTR+LALQ+
Sbjct: 29 QEATIPKILAGYDCIGGAKTGSGKTIAFAAPMLTKWSEDPYGVF-GLILTPTRELALQIA 87
Query: 119 DVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVA 178
+ +AA+ ++ + V + +G I + EL +RP +VA
Sbjct: 88 EQYAALGASMNIKVSVILGGGDIVQQALELQRRPHF---------------------VVA 126
Query: 179 TPGRLMDHINATRGFT---LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSD 235
TPGRL DHI ++ T L + +LV+DE DRL
Sbjct: 127 TPGRLADHILSSGEETIGGLRKIKFLVLDEADRL-------------------------- 160
Query: 236 ASTFLPSAFGSLKTIRRCGVERGFKDKPYP-RLVKMVLSATLTQDPNKLAQLDLHH---P 291
L ++FGS +ER FK P P + ++ +AT+T + L + + P
Sbjct: 161 ----LSNSFGS-------DLERCFKVLPPPEKRQTLLFTATVTDEVRALKEKPVPEGKLP 209
Query: 292 LFLTTGET--RYKLPERLESYKLICESKLKPLYLVAL--LQSLGEEKCIVFTSSVESTHR 347
+F+ E+ + +P L + L S +K YL A+ L+ + IVF + ++
Sbjct: 210 VFVHEVESVDKVAIPATLTTNYLFIPSYVKEAYLNAVLALEENADSTVIVFVNRTQTAEL 269
Query: 348 LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV 407
L L + L ++ Q R +L F+ G ++L+++D +RG+D+ V V
Sbjct: 270 LRRTLRN---LEFRVASLHSEMPQIERINSLHRFKAGAARILIATDVASRGLDIPSVELV 326
Query: 408 VNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 446
VNYD PA YIHR GRTARAG+ G + + + +VKR
Sbjct: 327 VNYDMPADPDDYIHRVGRTARAGRKGESLSFVTEQDVKR 365
>gi|414590428|tpg|DAA40999.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 444
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 123/450 (27%), Positives = 198/450 (44%), Gaps = 87/450 (19%)
Query: 22 SLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSG 81
+LF++ PL + K L+ G + + +Q A + L RD+ + TGSG
Sbjct: 62 TLFDELPLSQ------KTKDGLRKAGFTEMSEIQRA----ALPHALCGRDILGAAKTGSG 111
Query: 82 KTLSYALPIVQTLSNR------AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLA 135
KTL++ +P+++ L V C+ ++ PT DLA Q+ +V + S G+
Sbjct: 112 KTLAFVIPLIEKLYRERWGPEDGVGCI---ILSPTNDLAGQIFEVIKKVGQFHNFSGGVI 168
Query: 136 VGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTL 195
VG KR +E + +E ++++ILV TPGRL+ H N T F
Sbjct: 169 VG------------KRKGIE---------IEKERVNSLNILVCTPGRLVQHFNETANFDC 207
Query: 196 EHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGV 255
L LV+DE D++L ++ + ++ + +R+
Sbjct: 208 SQLQLLVLDEADQILDHGFRNQVDAII----------------------SQIPKVRQT-- 243
Query: 256 ERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG-ETRYKLPERLESYKLIC 314
++ SAT T+ LA++ L P +++ E R P+ LE Y +I
Sbjct: 244 --------------LLFSATQTKSVKDLARVSLRDPEYISVHEEARTATPDTLEQYAMIV 289
Query: 315 ESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELR--IKIKEYSGLQRQS 372
+ K L + ++ K IVF SSV+ + + F +LR I +K G +
Sbjct: 290 PLEQKLNMLWSFIKRHLNSKTIVFLSSVKQVKFVYEI---FKKLRPGIPLKCMHGRMKHV 346
Query: 373 VRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL 432
V+ + F E VL S+D +RG+D++ V+ VV D P I YIHR GRTAR +
Sbjct: 347 VQQAIVADFNEA-TSVLFSTDITSRGLDIKNVDWVVQVDCPENIDNYIHRVGRTARYNKK 405
Query: 433 GRCFTLLHKDEVKRFKKLLQKADNDSCPIH 462
G+ L +E +KL KA PIH
Sbjct: 406 GKSLIFLCPEEEAMLEKL--KATESKIPIH 433
>gi|309792104|ref|ZP_07686577.1| DEAD/DEAH box helicase domain protein [Oscillochloris trichoides
DG-6]
gi|308225848|gb|EFO79603.1| DEAD/DEAH box helicase domain protein [Oscillochloris trichoides
DG6]
Length = 422
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 117/419 (27%), Positives = 185/419 (44%), Gaps = 73/419 (17%)
Query: 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQT 93
L P L + G + P+Q +TI L ++L + TG+GKT ++ LPI+Q
Sbjct: 7 ALHPALMQNVSAQGFTQPTPIQA----QTIPLALSGQNLIGLAQTGTGKTAAFVLPILQR 62
Query: 94 LSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPK 153
L R +AL+V PTR+LA Q+ D +A GL G
Sbjct: 63 LLQNRQRGTQALIVTPTRELAEQINDTIRVLAHGTGLRSAPIYG---------------- 106
Query: 154 LEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT-LEHLCYLVVDETDRLLRE 212
G+ +P++ + L++ V+I+VA PGRL+DH+ RG L+ + LV+DE DR+L
Sbjct: 107 ---GVGMEPQE--RALRAGVEIVVACPGRLIDHLG--RGSARLDGVQMLVLDEADRML-- 157
Query: 213 AYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVL 272
+LP + ++ +L T R+ M+
Sbjct: 158 -DMGFLPAIQRI-------------------LSALPTRRQT----------------MLF 181
Query: 273 SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLI-CESKLKPLYLVALLQSLG 331
SATL + +LA H + G R P ++ + K L+ LL
Sbjct: 182 SATLPAELQQLAATTAPHAKLVQIGLVR---PAHTITHAIYPVPPHRKTALLLDLLHKAN 238
Query: 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVS 391
+VFT + HR LL + Q+ R L FR+G+ ++LV+
Sbjct: 239 SGSVLVFT---RTKHRANRLLQQIAREGHSAAVLHSNKSQNQRQLALDGFRDGRFRILVA 295
Query: 392 SDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
+D RG+DVE +++V+NYD P YIHR GRT RA + G FTL+ ++ + +++
Sbjct: 296 TDIAARGLDVERISHVINYDIPDTPDAYIHRIGRTGRATRSGDAFTLVTPEDASQVRQI 354
>gi|255561546|ref|XP_002521783.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223538996|gb|EEF40593.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 714
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 117/425 (27%), Positives = 192/425 (45%), Gaps = 58/425 (13%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P L A++ G P+Q+A I GL +RD+ + TGSGKT ++ LP++ +
Sbjct: 301 LTPELLKAVERAGYEKPSPIQMAA----IPLGLQQRDVIGIAETGSGKTAAFVLPMLTYI 356
Query: 95 S-------NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISE 147
S + A+V+ PTR+LA Q++D A +G+ V VG SI
Sbjct: 357 SRLPPMSEDNEAEGPYAVVMAPTRELAQQIEDETVKFAHYLGIKVVSIVGGQSIE----- 411
Query: 148 LIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 207
E G ++ ++++ATPGRL+D + R L Y+V+DE D
Sbjct: 412 -------EQGF---------RIRQGCEVVIATPGRLLDCLE-RRYAVLNQCNYVVLDEAD 454
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R++ ++ + VL S N ++ + +K R
Sbjct: 455 RMIDMGFEPQVVGVLDAMPSSN--------------------LKPENEDEELDEKKIYRT 494
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
M SAT+ +LA+ L +P+ + G T K + + + ++ + K L LL
Sbjct: 495 TYM-FSATMPPAVERLARKYLRNPVVVNIG-TAGKATDLISQHVIMVKESEKFFKLQRLL 552
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
G++ IVF ++ ++ T+ + + + ++ G + Q R +L+ FR K
Sbjct: 553 DEAGDKTAIVFVNTKKNAD---TVAKNLDKAKYRVTTLHGGKSQEQREISLEGFRTKKYT 609
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 447
VLV++D RG+D+ V +V+NYD P I+ Y HR GRT RAG+ G T L + F
Sbjct: 610 VLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKSGVATTFLTLHDTDVF 669
Query: 448 KKLLQ 452
L Q
Sbjct: 670 YDLKQ 674
>gi|294944705|ref|XP_002784389.1| ATP-dependent RNA helicase DRS1, putative [Perkinsus marinus ATCC
50983]
gi|239897423|gb|EER16185.1| ATP-dependent RNA helicase DRS1, putative [Perkinsus marinus ATCC
50983]
Length = 720
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 115/433 (26%), Positives = 186/433 (42%), Gaps = 81/433 (18%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-VR 100
L +G + PVQ ++ I L +D+ + TGSGKT + LPIV+ L + VR
Sbjct: 147 GLNALGFAEPTPVQ----RDVIPVALRSQDILAMAETGSGKTGGFLLPIVERLCQASHVR 202
Query: 101 CLR----------------ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADE 144
R ALV+LPTR+LA+Q + L+ L VG
Sbjct: 203 SRRKDPHTGRITGGRAATKALVLLPTRELAVQCYKMLRDFTKFAPLTSCLVVG------- 255
Query: 145 ISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVD 204
+D + E+++ D+++ATPGR++D + + LE +V+D
Sbjct: 256 --------------GFDAQKQASEMRAQPDVVLATPGRVLDLLLNSPNIHLEMCEIVVLD 301
Query: 205 ETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPY 264
E DRLL ++ T++Q + C R
Sbjct: 302 ECDRLLEMGFRDECLTIIQ---------------------------KHCNRSRQT----- 329
Query: 265 PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLV 324
M+ SAT+ Q+ KLA++ L P+ + T + P + + + + + L+
Sbjct: 330 -----MMFSATMNQEVLKLAKVVLSKPVTIETTKANRVSPTLTQEFIRVTSEQQREATLL 384
Query: 325 ALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 384
A ++C++F + ++ HR+ LL G ++K E G Q R K L F G
Sbjct: 385 AACTKHFTKRCLIFCAQKKTAHRMAVLLGLVG--KVKFAELHGNLSQQQRVKALADFESG 442
Query: 385 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444
K L+ +D RG+D+ V V+N++ P + Y+HR GRTARAG G T+ E
Sbjct: 443 KATHLICTDLAARGLDLPHVETVINFELPPDVTKYVHRVGRTARAGASGTSVTMYTPGEY 502
Query: 445 KRFKKLLQKADND 457
K+ K + +K D
Sbjct: 503 KQVKHIAKKCTAD 515
>gi|344303887|gb|EGW34136.1| hypothetical protein SPAPADRAFT_59553 [Spathaspora passalidarum
NRRL Y-27907]
Length = 431
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 117/423 (27%), Positives = 196/423 (46%), Gaps = 71/423 (16%)
Query: 39 LKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCIN-SPTGSGKTLSYALPIVQTLSNR 97
L +L M I P+Q A P + + CI + TGSGKT+++A P++ S
Sbjct: 12 LSESLIAMKIHQPTPIQTACI-----PAILKGHDCIGGAKTGSGKTIAFAAPMLTDWSAD 66
Query: 98 AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAG 157
R + L++ PTR+LALQ+ + FAA+ + + V + VG I + L + P
Sbjct: 67 P-RGIFGLILTPTRELALQIAEQFAALGSNMNIKVSVIVGGEDIVTQALALQRNPHF--- 122
Query: 158 ICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT---LEHLCYLVVDETDRLLREAY 214
++ATPGRL DH+ + T L+ + YLV+DE DRLL ++
Sbjct: 123 ------------------VIATPGRLADHVLNSGEETVAGLKRVKYLVLDEADRLLSNSF 164
Query: 215 QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274
+ L ++ S +ENR T L +A T+ R KD P
Sbjct: 165 SSDLERCFKVIPS-SENR----QTLLFTA-----TV--TDAVRALKDAPAKE-------- 204
Query: 275 TLTQDPNKLAQLDLHHPLFLTTGET--RYKLPERLESYKLICESKLKPLYLVAL--LQSL 330
KL P+F+ ET + +P L + S +K YL ++ L+
Sbjct: 205 ------GKL-------PVFMHEVETVDKVAIPNSLSIKYVFVPSYVKEAYLHSILSLEQY 251
Query: 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 390
++ ++F + + +C L +L ++ RQ+ R +L F+ G ++L+
Sbjct: 252 KDKTAVIFVNRTITAEVICRTLR---KLEFRVASLHSQMRQTERINSLHRFKAGAARILI 308
Query: 391 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
++D +RG+D+ V VVN+D PA +IHR GRTARAG+ G +++ + +V+R +
Sbjct: 309 ATDVASRGLDIPSVELVVNFDIPADPDDFIHRVGRTARAGRKGDAVSIVGEKDVERIHAI 368
Query: 451 LQK 453
++
Sbjct: 369 EER 371
>gi|261218712|ref|ZP_05932993.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
M13/05/1]
gi|261314321|ref|ZP_05953518.1| DEAD/DEAH box helicase domain-containing protein [Brucella
pinnipedialis M163/99/10]
gi|261317582|ref|ZP_05956779.1| DEAD/DEAH box helicase domain-containing protein [Brucella
pinnipedialis B2/94]
gi|261321790|ref|ZP_05960987.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
M644/93/1]
gi|265988616|ref|ZP_06101173.1| DEAD/DEAH box helicase domain-containing protein [Brucella
pinnipedialis M292/94/1]
gi|340790566|ref|YP_004756031.1| ATP-dependent RNA helicase [Brucella pinnipedialis B2/94]
gi|260923801|gb|EEX90369.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
M13/05/1]
gi|261294480|gb|EEX97976.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
M644/93/1]
gi|261296805|gb|EEY00302.1| DEAD/DEAH box helicase domain-containing protein [Brucella
pinnipedialis B2/94]
gi|261303347|gb|EEY06844.1| DEAD/DEAH box helicase domain-containing protein [Brucella
pinnipedialis M163/99/10]
gi|264660813|gb|EEZ31074.1| DEAD/DEAH box helicase domain-containing protein [Brucella
pinnipedialis M292/94/1]
gi|340559025|gb|AEK54263.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella
pinnipedialis B2/94]
Length = 482
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 117/420 (27%), Positives = 194/420 (46%), Gaps = 80/420 (19%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P++ A++ G ++ P+Q I P L +D+ + TG+GKT S+ LP++ L
Sbjct: 9 LSPKVIAAVEAAGYTAPTPIQAGA----IPPALERKDVLGIAQTGTGKTASFVLPMLTLL 64
Query: 95 S-NRA-VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
RA R R L++ PTR+LA QV++ F L+V L +G
Sbjct: 65 EKGRARARMPRTLILEPTRELAAQVEENFVKYGINHRLNVALLIG--------------- 109
Query: 153 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLR 211
G+ ++ ++ ++L+ D+L+ATPGR++DH RG L + LV+DE DR+L
Sbjct: 110 ----GVSFEEQE--RKLERGADVLIATPGRMLDHFE--RGKLLLTGVEILVIDEADRMLD 161
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
F+P +ER K P+ R +
Sbjct: 162 MG-------------------------FIPD------------IERICKLIPFTRQT-LF 183
Query: 272 LSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL---KPLYLVALLQ 328
SAT+ + KL + LH P+ + + + + +L+ K K L L+Q
Sbjct: 184 FSATMPPEITKLTEQFLHSPVRIEVAKASSTA--KTVTQRLVKSGKKDWDKRAVLRDLIQ 241
Query: 329 SLGE--EKCIVFTSSVESTHRLC-TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 385
S G+ + I+F + + L +L H G Q R L +F++GK
Sbjct: 242 SEGDSLKNAIIFCNRKKDVSELFRSLTRH----EFDAGALHGDMDQRARMAMLSSFKDGK 297
Query: 386 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 445
+++LV+SD RG+D+ V++V N+D P + + Y+HR GRT RAG+ G+ FT++ + K
Sbjct: 298 LRLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSDTK 357
>gi|91223278|ref|ZP_01258544.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
alginolyticus 12G01]
gi|91192091|gb|EAS78354.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
alginolyticus 12G01]
Length = 443
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 120/453 (26%), Positives = 200/453 (44%), Gaps = 82/453 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIV-QT 93
LD RL L++ F + Q+ I + +DL +S TGSGKTL++ LP++ ++
Sbjct: 8 LDNRLLKNLKHYD----FKKATDIQQQAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHKS 63
Query: 94 LSNRAVRCL--RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
L ++ RA+++ PTR+LA QV ++ + L +G + D++ L +
Sbjct: 64 LKTKSFSAKDPRAVILAPTRELAKQVYGELRSMLAGLSYEAALILGGENFNDQVKALRRY 123
Query: 152 PKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 211
PK +VATPGRL DH+ R L+ L L++DE DR+L
Sbjct: 124 PKF---------------------IVATPGRLADHLE-HRSLYLDGLETLILDEADRMLD 161
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
F P L+ I + R R ++
Sbjct: 162 LG-------------------------FAPE----LRRIHKAAKHR--------RRQTLM 184
Query: 272 LSATLTQ-DPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL 330
SATL D N++A L+ P + G + + + + + L K L +L
Sbjct: 185 FSATLDHADVNEIAAEMLNAPKRIAIGVSNEEHKDITQKFYLCDHLDHKEAILDRVLSEA 244
Query: 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 390
+ I+FT++ + T RL LN E ++K SG Q+ R+ + F ++LV
Sbjct: 245 EYRQVIIFTATRDDTERLTEKLN---EKKLKAVALSGNLNQTQRNTIMSQFERAVFKILV 301
Query: 391 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK---DEVKRF 447
++D +RG+D+ V +V+N+D P + + Y+HR GRT RAG G +L+ D KR
Sbjct: 302 TTDVASRGLDIATVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLVGPKDWDSFKRV 361
Query: 448 KKLLQKADNDSCPIHSIPSSLIESLRPVYKSVR 480
+ LQ+ + S+ E L+ +K ++
Sbjct: 362 EAYLQQ---------DLEFSVFEDLKGKFKGLK 385
>gi|381162701|ref|ZP_09871931.1| DNA/RNA helicase, superfamily II [Saccharomonospora azurea NA-128]
gi|418460916|ref|ZP_13032000.1| DNA/RNA helicase, superfamily II [Saccharomonospora azurea SZMC
14600]
gi|359739012|gb|EHK87888.1| DNA/RNA helicase, superfamily II [Saccharomonospora azurea SZMC
14600]
gi|379254606|gb|EHY88532.1| DNA/RNA helicase, superfamily II [Saccharomonospora azurea NA-128]
Length = 575
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 114/435 (26%), Positives = 195/435 (44%), Gaps = 70/435 (16%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P L AL ++G P+Q A I P L D+ + TG+GKT +++LP++ +
Sbjct: 28 LRPELLTALSDLGYEEPTPIQRA----AIPPLLDGADVVGQAATGTGKTAAFSLPVLHRI 83
Query: 95 SNRAVRCL--RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
++ R + ALV++PTR+LA QV + +G+ V G + +
Sbjct: 84 ADVEQRGVAPSALVLVPTRELAAQVCEAMYRYGHRLGIRVVPVYGGQPMGRQ-------- 135
Query: 153 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLR 211
L+ L++ VD++VATPGR +DH+ +RG L L +V+DE D +L
Sbjct: 136 -------------LRSLETGVDVVVATPGRALDHL--SRGSLDLSTLRMVVLDEADEMLD 180
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
+ + +L+ T D + A+ +P L +RR E PR +++
Sbjct: 181 MGFAEDIDAILERTPDDRQTMLFSAT--MPPRIAGL--VRRYLRE--------PRRIELS 228
Query: 272 LSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLG 331
+ ++++D + Q Y +P KP L +L
Sbjct: 229 RAESMSEDAASVTQ-------------AAYVVPR-----------GHKPAALGRVLDIEA 264
Query: 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVS 391
E +VF + E RL +N G + + G Q+ R + + R G ++V+
Sbjct: 265 PEAAVVFCRTREEVDRLTETMNARG---YRAEALHGGMDQTQRQRVVGRLRAGTADLVVA 321
Query: 392 SDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLL 451
+D RG+D++ + +VVNYD P+ + Y+HR GR RAG+ G TL E R K +
Sbjct: 322 TDVAARGLDIDQLTHVVNYDVPSAPEVYVHRIGRVGRAGREGSAITLAEPRE-HRMIKTI 380
Query: 452 QKADNDSCPIHSIPS 466
++ + P+ +P+
Sbjct: 381 ERVTGHTIPVRKLPT 395
>gi|410860280|ref|YP_006975514.1| ATP-dependent RNA helicase [Alteromonas macleodii AltDE1]
gi|410817542|gb|AFV84159.1| ATP-dependent RNA helicase [Alteromonas macleodii AltDE1]
Length = 586
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 129/453 (28%), Positives = 218/453 (48%), Gaps = 78/453 (17%)
Query: 15 MRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFE-RDLC 73
M + VD++ F+D +LP +P L+ AL+ +G P+Q E+I P L E DL
Sbjct: 1 MTTTVDMT-FKDL---NLP--EPILQ-ALEKVGYEKPSPIQA----ESI-PLLLEGHDLL 48
Query: 74 INSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVG 133
+ TG+GKT ++ALP++ + R + LV+ PTR+LA+QV + F A
Sbjct: 49 GQAQTGTGKTAAFALPMLANIDPEQ-RKPQLLVLAPTRELAIQVAEAFQVYA-------- 99
Query: 134 LAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193
S+ IK + G YD + +++L+ V ++V TPGR++DHI +
Sbjct: 100 ----------SFSQKIKVLPVYGGQSYD--NQIRQLKRGVQVVVGTPGRIIDHIK-RKTL 146
Query: 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRC 253
L L YLV+DE D +LR + + +L + + E + + S +P G +K I
Sbjct: 147 DLSELKYLVLDEADEMLRMGFIDDVELIL--SHAPEERQTALFSATMP---GPIKKI--- 198
Query: 254 GVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLI 313
+R KD + ++ V +A+ + + Q+ HH
Sbjct: 199 -TQRYLKDPKHVKIASKVSTASTIR--QRYCQIAPHH----------------------- 232
Query: 314 CESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSV 373
KL+ L + +++ + I+F + +T L L+ G ++ +G QS
Sbjct: 233 ---KLEALTRIMEVEAF--DGMIIFVRTKTATVELADKLSARG---YDVEPLNGDIPQSA 284
Query: 374 RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 433
R +T++ ++G+I +LV++D + RG+DVE V++V+NYD P ++Y+HR GRT RAG+ G
Sbjct: 285 RERTVEKLKQGQIDILVATDVVARGLDVERVSHVINYDIPYDSESYVHRIGRTGRAGRQG 344
Query: 434 RCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPS 466
+ E KR ++K IPS
Sbjct: 345 DAILFISHRE-KRLLFSIEKTTKQPIEAMPIPS 376
>gi|422909459|ref|ZP_16944107.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE-09]
gi|424658842|ref|ZP_18096093.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE-16]
gi|341635148|gb|EGS59872.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE-09]
gi|408053917|gb|EKG88915.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE-16]
Length = 448
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 119/426 (27%), Positives = 188/426 (44%), Gaps = 73/426 (17%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIV-QT 93
LD RL L+N+ + F + Q+ I + RDL +S TGSGKTL++ LP++ ++
Sbjct: 8 LDNRL---LKNLAHYN-FKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHKS 63
Query: 94 LSNRAVRCL--RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
L +A R L+++PTR+LA QV ++ + + L G + D+++ L +
Sbjct: 64 LKTKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVNALARG 123
Query: 152 PKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 211
P+ +VATPGRL DH+ R LE L LV+DE DR+L
Sbjct: 124 PRF---------------------IVATPGRLADHLE-HRSLFLEGLETLVLDEADRML- 160
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
G K +RR + R ++
Sbjct: 161 -------------------------------DLGFAKELRRI-----HSAAKHRRRQTLM 184
Query: 272 LSATLTQ-DPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL 330
SATL D N +A L+ P + G + + + + L K L +L
Sbjct: 185 FSATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLDRILADA 244
Query: 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 390
+ IVFT++ T RL LN + +K SG Q+ R+ + F ++LV
Sbjct: 245 DYRQVIVFTATRADTDRLTEKLN---QSNLKAVALSGNLNQTQRNTIMGQFERAVFKILV 301
Query: 391 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK---DEVKRF 447
++D +RG+D+ V +V+N+D P + + Y+HR GRT RAG G +L+ D KR
Sbjct: 302 TTDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWDSFKRV 361
Query: 448 KKLLQK 453
+ LQ+
Sbjct: 362 EAFLQQ 367
>gi|262376303|ref|ZP_06069533.1| ATP-dependent RNA helicase rhlB [Acinetobacter lwoffii SH145]
gi|262308904|gb|EEY90037.1| ATP-dependent RNA helicase rhlB [Acinetobacter lwoffii SH145]
Length = 383
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 117/424 (27%), Positives = 190/424 (44%), Gaps = 89/424 (20%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P LK A+ +G +++ P+Q V + T+ D + TG+GKT ++ + I+ L
Sbjct: 10 LHPNLKKAIDALGFTTMTPIQQKVLKFTLAG----HDAIGRAQTGTGKTAAFLISIMNDL 65
Query: 95 SNRAVRCLR------ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
N ++ R AL++ PTR+LALQ++ +A GL+V +G + ++L
Sbjct: 66 LNNPIQEQRYRGEPRALILAPTRELALQIESDAQDLAKYAGLNVVTLLGGVDFDKQKNQL 125
Query: 149 IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208
K P VDI+VATPGRL+D + + L+ + +LV+DE DR
Sbjct: 126 NKAP--------------------VDIMVATPGRLIDFVEQKEVW-LDQIEFLVIDEADR 164
Query: 209 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLV 268
LL ++P+V ++ R F K R+
Sbjct: 165 LLD---MGFIPSVKRIVR-----------------FSPRKEQRQT--------------- 189
Query: 269 KMVLSATLTQDPNKLAQLDLHHPLFLTTG---------ETRYKLPERLESYKLICESKLK 319
++ SAT + D LAQ L P+ + E R + + + YKL+ E
Sbjct: 190 -LMFSATFSYDVLNLAQQWLFEPVTVEIEPEKKTNADVEQRVYMVAKADKYKLLQE---- 244
Query: 320 PLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLK 379
+L+ EK ++F + + +L L G K+ SG Q R K L
Sbjct: 245 ------ILRDEPIEKVMIFANRRDQVRKLYDHLKRDG---YKVVMLSGEIAQDKRLKMLD 295
Query: 380 AFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439
F+ GK +++++D RG+ V+GV++VVN+ P Y+HR GRT RAG G + L
Sbjct: 296 QFKNGKHNIMIATDVAGRGIHVDGVSHVVNFTLPEQSDDYVHRIGRTGRAGTSGVSISFL 355
Query: 440 HKDE 443
+D+
Sbjct: 356 AEDD 359
>gi|164656665|ref|XP_001729460.1| hypothetical protein MGL_3495 [Malassezia globosa CBS 7966]
gi|159103351|gb|EDP42246.1| hypothetical protein MGL_3495 [Malassezia globosa CBS 7966]
Length = 801
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 122/421 (28%), Positives = 183/421 (43%), Gaps = 89/421 (21%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L R + L+ G + P+Q A ++ L RD+ ++ TGSGKTL++ +P+++ L
Sbjct: 55 LSSRTRQGLKRAGFIDMTPIQKA----SLPASLRGRDVLGSARTGSGKTLAFLIPVLERL 110
Query: 95 SNR---AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
+ L ALVV PTR+LA+Q+ DV +I + S GL +G + E L K
Sbjct: 111 YRQRWSHTDGLGALVVSPTRELAMQIFDVLRSIGGSHTFSAGLVIGGKDLTHEQDRLRK- 169
Query: 152 PKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 211
++IL+ATPGRL+ H++ T GF +L LV+DE DR+L
Sbjct: 170 ---------------------MNILIATPGRLLQHLDQTVGFDASNLQVLVLDEADRILD 208
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
+ L +L+ LPS+ +L +
Sbjct: 209 MGFANTLNAILE---------------HLPSSRQTL-----------------------L 230
Query: 272 LSATLTQDPNKLAQLDLHHPLFLTTGE-----------TRYKLPERLESYKLICESKLKP 320
SAT T+ LA+L L P +T + + P LE + ++ + K
Sbjct: 231 YSATQTRRVKDLARLSLSDPALITVQDPDATDPTSSSSSSSSTPRHLEQFYMLVDLPRKL 290
Query: 321 LYLVALLQSLGEEKCIVFTSS---VESTHRLCTLLNHFGELR--IKIKEYSGLQRQSVRS 375
L + L S + K +VF SS V+ H + F +LR + + G Q+Q R
Sbjct: 291 DMLFSFLCSHTQCKVLVFMSSCRQVQFAHEV------FCKLRPGLPLLALHGKQKQPRRL 344
Query: 376 KTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRC 435
K FR K L ++D RG+D V+ VV D P TYIHR GRTAR G+
Sbjct: 345 KIFDEFRRSKHAALFATDIAARGLDFPAVDWVVQVDVPDSADTYIHRVGRTARYHAHGKA 404
Query: 436 F 436
Sbjct: 405 L 405
>gi|260776996|ref|ZP_05885890.1| ATP-dependent RNA helicase [Vibrio coralliilyticus ATCC BAA-450]
gi|260606662|gb|EEX32936.1| ATP-dependent RNA helicase [Vibrio coralliilyticus ATCC BAA-450]
Length = 449
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 122/453 (26%), Positives = 200/453 (44%), Gaps = 82/453 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIV-QT 93
LD RL L++ F + Q+ I + +DL +S TGSGKTL++ LP++ ++
Sbjct: 14 LDNRLLKNLKHFD----FKQATEIQQQAIPVSIAGKDLLASSKTGSGKTLAFVLPMLHKS 69
Query: 94 LSNRAVRCL--RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
L N+A R +++ PTR+LA QV ++ + L VG + D++ L +
Sbjct: 70 LKNKAFSAKDPRGVILAPTRELAKQVYGELRSMLGGLSYDATLIVGGENFNDQVKALRRY 129
Query: 152 PKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 211
PK +VATPGRL DH++ R L+ L L++DE DR+L
Sbjct: 130 PKF---------------------IVATPGRLADHLDH-RSLYLDGLETLILDEADRMLD 167
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
F P L+ I R R ++
Sbjct: 168 LG-------------------------FAPE----LRRIHNAAKHR--------RRQTLM 190
Query: 272 LSATLTQ-DPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL 330
SATL + N++A L P + G + + + + + L K L +L+
Sbjct: 191 FSATLDHAEVNEIAFEMLDAPKRIAIGVSNEEHKDITQKFYLCDHLDHKEAILERILEEA 250
Query: 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 390
++ I+FT++ T RL LN E ++K SG Q+ R+ + F ++LV
Sbjct: 251 EYKQLIIFTATRVDTERLTDKLN---EKKLKAIALSGNLNQTQRNTIMSQFERAVFKILV 307
Query: 391 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK---DEVKRF 447
++D +RG+D+ V +VVN+D P + + Y+HR GRT RAG G +L+ D KR
Sbjct: 308 TTDVASRGLDIANVTHVVNFDMPKHTEEYVHRVGRTGRAGNKGDAVSLVGPKDWDSFKRV 367
Query: 448 KKLLQKADNDSCPIHSIPSSLIESLRPVYKSVR 480
+ LQ+ + S +E L+ +K ++
Sbjct: 368 EAYLQQ---------DLTFSELEGLKGKFKGIK 391
>gi|299532061|ref|ZP_07045456.1| hypothetical protein CTS44_14723 [Comamonas testosteroni S44]
gi|298719976|gb|EFI60938.1| hypothetical protein CTS44_14723 [Comamonas testosteroni S44]
Length = 464
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 118/411 (28%), Positives = 189/411 (45%), Gaps = 81/411 (19%)
Query: 39 LKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL---- 94
L A+ +MG S+ P+Q + I L +D+ + TG+GKT +++LP++Q L
Sbjct: 5 LARAVADMGYESMTPIQA----QAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQRLMRHE 60
Query: 95 ---SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
++ A +RALV+LPTR+LA QV A A L + G
Sbjct: 61 NASASPARHPVRALVLLPTRELADQVAQQIALYAKHTKLRSTVVFG-------------- 106
Query: 152 PKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 211
G+ P+ + EL+ V++LVATPGRL+DHI A + L + Y+V+DE DR+L
Sbjct: 107 -----GMDMKPQTI--ELKKGVEVLVATPGRLLDHIEA-KNVVLNQVEYVVLDEADRMLD 158
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
+ L +L ++LP + +L +
Sbjct: 159 IGFLPDLQRIL---------------SYLPKSRTTL-----------------------L 180
Query: 272 LSATLTQDPNKLAQLDLHHPLFLTTG---ETRYKLPERLESYKLICESKLKPLYLVALLQ 328
SAT + + +LA L P+ + ET + +R YK+ + K + ++L+
Sbjct: 181 FSATFSPEIKRLAGSYLQDPVTIEVARPNETASTVEQRF--YKVTDDDKR--YAIRSVLK 236
Query: 329 SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 388
+ +F++S RL L G ++ G + Q R K L+AF+ G++ +
Sbjct: 237 ERDIRQAFIFSNSKLGCARLTRALERDG---LRAAALHGDKSQDERLKALEAFKAGEVDL 293
Query: 389 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439
LV +D RG+D++ V V NYD P + Y+HR GRT RAG G TL+
Sbjct: 294 LVCTDVAARGLDIKDVPAVFNYDVPFNAEDYVHRIGRTGRAGASGLAVTLV 344
>gi|306843833|ref|ZP_07476431.1| DEAD-box ATP dependent DNA helicase [Brucella inopinata BO1]
gi|306275911|gb|EFM57627.1| DEAD-box ATP dependent DNA helicase [Brucella inopinata BO1]
Length = 482
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 117/420 (27%), Positives = 194/420 (46%), Gaps = 80/420 (19%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P++ A++ G ++ P+Q I P L +D+ + TG+GKT S+ LP++ L
Sbjct: 9 LSPKVIAAVEAAGYTAPTPIQAGA----IPPALERKDVLGIAQTGTGKTASFVLPMLTLL 64
Query: 95 S-NRA-VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
RA R R L++ PTR+LA QV++ F L+V L +G
Sbjct: 65 EKGRARARMPRTLILEPTRELAAQVEENFVKYGINHRLNVALLIG--------------- 109
Query: 153 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLR 211
G+ ++ ++ ++L+ D+L+ATPGR++DH RG L + LV+DE DR+L
Sbjct: 110 ----GVSFEEQE--RKLERGADVLIATPGRMLDHFE--RGKLLLTGVEILVIDEADRMLD 161
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
F+P +ER K P+ R +
Sbjct: 162 MG-------------------------FIPD------------IERICKLIPFTRQT-LF 183
Query: 272 LSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL---KPLYLVALLQ 328
SAT+ + KL + LH P+ + + + + +L+ K K L L+Q
Sbjct: 184 FSATMPPEITKLTEQFLHSPVRIEVAKASSTA--KTVTQRLVKSGKKDWDKRAVLRDLIQ 241
Query: 329 SLGE--EKCIVFTSSVESTHRLC-TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 385
S G+ + I+F + + L +L H G Q R L +F++GK
Sbjct: 242 SEGDTLKNAIIFCNRKKDVSELFRSLTRH----EFDAGALHGDMDQRARMAMLSSFKDGK 297
Query: 386 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 445
+++LV+SD RG+D+ V++V N+D P + + Y+HR GRT RAG+ G+ FT++ + K
Sbjct: 298 LRLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSDTK 357
>gi|242050370|ref|XP_002462929.1| hypothetical protein SORBIDRAFT_02g034740 [Sorghum bicolor]
gi|241926306|gb|EER99450.1| hypothetical protein SORBIDRAFT_02g034740 [Sorghum bicolor]
Length = 745
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 123/450 (27%), Positives = 198/450 (44%), Gaps = 87/450 (19%)
Query: 22 SLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSG 81
+LF++ PL + K L+ G + + +Q A + L RD+ + TGSG
Sbjct: 62 TLFDELPLSQ------KTKDGLRKAGFTEMSEIQRAA----LPHALCGRDVLGAAKTGSG 111
Query: 82 KTLSYALPIVQTLSNR------AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLA 135
KTL++ +P+++ L V C+ ++ PT DLA Q+ +V + S G
Sbjct: 112 KTLAFVIPVLEKLYRERWGPEDGVGCI---ILSPTNDLAGQIFEVITTVGQFHNFSGGAI 168
Query: 136 VGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTL 195
VG+ GI + E V ++++ILV TPGRL+ H+N T F
Sbjct: 169 VGKRK----------------GIELEKEHV-----NSLNILVCTPGRLVQHLNETANFDC 207
Query: 196 EHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGV 255
L LV+DE D++L +++ + ++ + +R+
Sbjct: 208 SQLQLLVLDEADQILDHGFRSQVDAII----------------------SQIPKVRQT-- 243
Query: 256 ERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG-ETRYKLPERLESYKLIC 314
++ SAT T+ LA++ L P +++ E + P+ LE Y +I
Sbjct: 244 --------------LLFSATQTKSVKDLARVSLRDPEYISVHEEAKTATPDTLEQYAMIV 289
Query: 315 ESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELR--IKIKEYSGLQRQS 372
+ K L + ++ K IVF SSV+ + + F +LR I +K G +
Sbjct: 290 PLEQKLNMLWSFIKRHLNSKTIVFLSSVKQVKFVYEI---FKKLRPGIPLKCMHGRMKYE 346
Query: 373 VRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL 432
V+ + F E VL S+D +RG+D+E V+ VV D P I YIHR GRTAR +
Sbjct: 347 VQQAIVADFNE-TTSVLFSTDISSRGLDIENVDWVVQVDCPENIDNYIHRVGRTARYNKK 405
Query: 433 GRCFTLLHKDEVKRFKKLLQKADNDSCPIH 462
G+ L +E +KL KA PIH
Sbjct: 406 GKSLVFLCPEEEAMLEKL--KATESKIPIH 433
>gi|424881770|ref|ZP_18305402.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WU95]
gi|392518133|gb|EIW42865.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WU95]
Length = 520
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 140/499 (28%), Positives = 215/499 (43%), Gaps = 116/499 (23%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-NRA-V 99
A+ + G + P+Q I L RD+C + TG+GKT S+ LP++ L RA
Sbjct: 22 AVTDAGYTIPTPIQAGA----IPFALERRDICGIAQTGTGKTASFVLPMLSLLEKGRARA 77
Query: 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 159
R R L++ PTR+LA QV + F L+V L +G G+
Sbjct: 78 RMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIG-------------------GVS 118
Query: 160 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 219
++ +D ++L+ D+L+ TPGRL+DH + + + LV+DE DR+L
Sbjct: 119 FEDQD--RKLERGADVLICTPGRLLDHFERGK-LLMSGVEILVIDEADRMLDMG------ 169
Query: 220 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 279
F+P +ER K P+ R + SAT+ +
Sbjct: 170 -------------------FIPD------------IERIAKMIPFTRQT-LFFSATMPSE 197
Query: 280 PNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVA-------------- 325
KLA L +P ER+E K + VA
Sbjct: 198 IQKLADRFLQNP-------------ERIEVAKPASAAATVTQRFVASHGKDYEKRAVLRE 244
Query: 326 LLQSLGEEK-CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 384
L+++ E K IVF + + L L G + G Q R+ TL++FR+G
Sbjct: 245 LVRAQTELKNAIVFCNRKKDVADLFRSLERHG---FSVGALHGDMDQRSRTMTLQSFRDG 301
Query: 385 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444
+Q+LV+SD RG+D+ V++V N+D P + + Y+HR GRT RAG+ G FTL+ K +
Sbjct: 302 NLQLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFTLVTKRDT 361
Query: 445 K---RFKKLL-QKADNDSCPIHSIPSS--LIESLRPVYKSVRGGISDEAFWKVGCDLHGV 498
K +KL+ +K + S ++S+P + E+ RP S G D A
Sbjct: 362 KFVDAIEKLIGEKVEWLSGDLNSLPPAEESRETERPRRNSRERGARDGA----------- 410
Query: 499 NRVRRSFYQTSGDRALGKG 517
R + SGDR G+G
Sbjct: 411 --TRDRAPRESGDRDHGRG 427
>gi|381395029|ref|ZP_09920736.1| ATP-dependent RNA helicase RhlE [Glaciecola punicea DSM 14233 =
ACAM 611]
gi|379329307|dbj|GAB55869.1| ATP-dependent RNA helicase RhlE [Glaciecola punicea DSM 14233 =
ACAM 611]
Length = 399
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 110/425 (25%), Positives = 197/425 (46%), Gaps = 82/425 (19%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L L A+ + G ++ P+Q ++ I L +D+ + TG+GKT ++ LP++Q
Sbjct: 8 LSKELVSAVTDKGYTTPTPIQ----EQAIPAVLSGKDVMAAAQTGTGKTAAFTLPLIQRF 63
Query: 95 SNRAV----RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADE--ISEL 148
+ ++ALV+ PTR+LA QV ++ DE ++
Sbjct: 64 ATNYSEPRPNHIKALVLTPTRELAAQV---------------------AANIDEYKVNTP 102
Query: 149 IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDET 206
I+ + G+ +P+ ++ L+ DILVATPGRL+D NA + + LV+DE
Sbjct: 103 IRSTVVFGGVSINPQ--MKHLRRGCDILVATPGRLLDLFQQNAVK---FSDVSVLVLDEA 157
Query: 207 DRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPR 266
DR+L + + +L+L +N
Sbjct: 158 DRMLDMGFIHDIKRILKLLPQKRQN----------------------------------- 182
Query: 267 LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVAL 326
++ SAT ++D LA +++P+ ++ P +E + E K L+ L
Sbjct: 183 ---LLFSATFSEDIRGLASRLVNNPVEISVTPNNAAAPS-VEHSIVYLEKANKSKLLIHL 238
Query: 327 LQSLGEEKCIVFTSSVESTHRLC-TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 385
++S G ++ +VFT + +RL L +H I G + Q R+K L +F+ G+
Sbjct: 239 IESNGWQQALVFTRTKHGANRLTKQLCSH----EISAAAIHGNKSQGARTKALASFKNGE 294
Query: 386 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 445
+++LV++D RG+D++ + NVVNYD P + Y+HR GRT RAG +G+ + + ++ K
Sbjct: 295 LRILVATDIAARGIDIQQLPNVVNYDLPNVPEDYVHRIGRTGRAGSVGQAVSFVTAEDFK 354
Query: 446 RFKKL 450
+ +
Sbjct: 355 QLSDI 359
>gi|325001026|ref|ZP_08122138.1| DEAD/DEAH box helicase domain protein [Pseudonocardia sp. P1]
Length = 416
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 115/415 (27%), Positives = 183/415 (44%), Gaps = 72/415 (17%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101
+L G ++ FPVQ A +T L RDL TGSGKTL++ L ++ ++ R
Sbjct: 18 SLAAQGFTAPFPVQAATLPDT----LAGRDLLGRGQTGSGKTLAFGLALLARIAGDRARS 73
Query: 102 LR--ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 159
LV++PTR+LA QV DV +A AV L V VG S+ +++EL
Sbjct: 74 TAPLGLVLVPTRELAGQVVDVLTPLAAAVNLRVTAVVGGLSMNKQVAEL----------- 122
Query: 160 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 219
+ +D+LVATPGRL DH+ L + +DE DR+ A +LP
Sbjct: 123 ----------RRGIDLLVATPGRLTDHLQQGT-CDLSEVTITALDEADRM---ADMGFLP 168
Query: 220 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 279
V RG D+ +++ SATL +
Sbjct: 169 QV-----------------------------------RGILDRTPSDGQRLLFSATLDGE 193
Query: 280 PNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFT 339
+ L + L P+ + + + +E + L+ + + + E + I+F
Sbjct: 194 VDTLVRRHLTDPVTRSVAPPTASV-DTMEHHVLVVGKDDRSRVIAEIAAR--EGRTIMFV 250
Query: 340 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 399
+ R+ +L G + G + Q+ R++ L FR G++ VL+++D RG+
Sbjct: 251 RTKHGADRMVRVLRRQG---VAAGPLHGGRSQNQRNRALDEFRTGEVPVLIATDVAARGI 307
Query: 400 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 454
++ V VV+ D PA K Y+HRAGRTARAG+ G TL ++ L ++A
Sbjct: 308 HIDDVGLVVHVDPPADPKAYLHRAGRTARAGEEGVVVTLSAPEQRAEVDLLTKQA 362
>gi|195171938|ref|XP_002026759.1| GL13223 [Drosophila persimilis]
gi|194111693|gb|EDW33736.1| GL13223 [Drosophila persimilis]
Length = 348
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 96/234 (41%), Positives = 131/234 (55%), Gaps = 35/234 (14%)
Query: 5 KKKSMPVLP-WMRSPVDV---SLFED---------CPLDHLPCLDPRLKVALQNMGISSL 51
+KK VLP W+ P + SL D +++L L + AL+ M I L
Sbjct: 106 RKKVTEVLPPWLAYPTIIEGGSLLPDDDLEAGKDEASIENLSYLKDHTRQALKQMKIKRL 165
Query: 52 FPVQVAV--W----QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC-LRA 104
FPVQ V W Q P L RD+C+++PTGSGKTL++A+PIVQ L+NR VRC +RA
Sbjct: 166 FPVQRTVIPWILEAQGQPAP-LRPRDICVSAPTGSGKTLAFAIPIVQLLNNR-VRCKVRA 223
Query: 105 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 164
LVVLP +LALQV V A+ L V L Q + DE +L+ ++ G Y
Sbjct: 224 LVVLPVAELALQVFKVIRALCSKTELEVCLLSKQHRLEDEQEKLV---EVYKGQIY---- 276
Query: 165 VLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWL 218
S DI+V TPGRL+DH++AT+GF L+ L +LV+DE DR++ +Q L
Sbjct: 277 ------SKADIVVTTPGRLVDHLHATKGFCLKSLKFLVIDEADRIMDAFFQKRL 324
>gi|225627424|ref|ZP_03785461.1| ATP-dependent RNA helicase dbp2 [Brucella ceti str. Cudo]
gi|261222116|ref|ZP_05936397.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
B1/94]
gi|261758136|ref|ZP_06001845.1| ATP-dependent RNA helicase [Brucella sp. F5/99]
gi|265998081|ref|ZP_06110638.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
M490/95/1]
gi|225617429|gb|EEH14474.1| ATP-dependent RNA helicase dbp2 [Brucella ceti str. Cudo]
gi|260920700|gb|EEX87353.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
B1/94]
gi|261738120|gb|EEY26116.1| ATP-dependent RNA helicase [Brucella sp. F5/99]
gi|262552549|gb|EEZ08539.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
M490/95/1]
Length = 435
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 117/420 (27%), Positives = 194/420 (46%), Gaps = 80/420 (19%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P++ A++ G ++ P+Q I P L +D+ + TG+GKT S+ LP++ L
Sbjct: 9 LSPKVIAAVEAAGYTAPTPIQAGA----IPPALERKDVLGIAQTGTGKTASFVLPMLTLL 64
Query: 95 S-NRA-VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
RA R R L++ PTR+LA QV++ F L+V L +G
Sbjct: 65 EKGRARARMPRTLILEPTRELAAQVEENFVKYGINHRLNVALLIG--------------- 109
Query: 153 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLR 211
G+ ++ ++ ++L+ D+L+ATPGR++DH RG L + LV+DE DR+L
Sbjct: 110 ----GVSFEEQE--RKLERGADVLIATPGRMLDHFE--RGKLLLTGVEILVIDEADRMLD 161
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
F+P +ER K P+ R +
Sbjct: 162 MG-------------------------FIPD------------IERICKLIPFTRQT-LF 183
Query: 272 LSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL---KPLYLVALLQ 328
SAT+ + KL + LH P+ + + + + +L+ K K L L+Q
Sbjct: 184 FSATMPPEITKLTEQFLHSPVRIEVAKASST--AKTVTQRLVKSGKKDWDKRAVLRDLIQ 241
Query: 329 SLGE--EKCIVFTSSVESTHRLC-TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 385
S G+ + I+F + + L +L H G Q R L +F++GK
Sbjct: 242 SEGDSLKNAIIFCNRKKDVSELFRSLTRH----EFDAGALHGDMDQRARMAMLSSFKDGK 297
Query: 386 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 445
+++LV+SD RG+D+ V++V N+D P + + Y+HR GRT RAG+ G+ FT++ + K
Sbjct: 298 LRLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSDTK 357
>gi|265984026|ref|ZP_06096761.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp.
83/13]
gi|264662618|gb|EEZ32879.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp.
83/13]
Length = 482
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 117/420 (27%), Positives = 194/420 (46%), Gaps = 80/420 (19%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P++ A++ G ++ P+Q I P L +D+ + TG+GKT S+ LP++ L
Sbjct: 9 LSPKVIAAVEAAGYTAPTPIQAGA----IPPALERKDVLGIAQTGTGKTASFVLPMLTLL 64
Query: 95 S-NRA-VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
RA R R L++ PTR+LA QV++ F L+V L +G
Sbjct: 65 EKGRARARMPRTLILEPTRELAAQVEENFVKYGINHRLNVALLIG--------------- 109
Query: 153 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLR 211
G+ ++ ++ ++L+ D+L+ATPGR++DH RG L + LV+DE DR+L
Sbjct: 110 ----GVSFEEQE--RKLERGADVLIATPGRMLDHFE--RGKLLLTGVEILVIDEADRMLD 161
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
F+P +ER K P+ R +
Sbjct: 162 MG-------------------------FIPD------------IERICKLIPFTRQT-LF 183
Query: 272 LSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL---KPLYLVALLQ 328
SAT+ + KL + LH P+ + + + + +L+ K K L L+Q
Sbjct: 184 FSATMPPEITKLTEQFLHSPVRIEVAKASSTA--KTVTQRLVKSGKKDWDKRAVLRDLIQ 241
Query: 329 SLGE--EKCIVFTSSVESTHRLC-TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 385
S G+ + I+F + + L +L H G Q R L +F++GK
Sbjct: 242 SEGDSLKNAIIFCNRKKDVSELFRSLTRH----EFDAGALHGDMDQRARMAMLSSFKDGK 297
Query: 386 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 445
+++LV+SD RG+D+ V++V N+D P + + Y+HR GRT RAG+ G+ FT++ + K
Sbjct: 298 LRLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSDTK 357
>gi|424910616|ref|ZP_18333993.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
viciae USDA 2370]
gi|392846647|gb|EJA99169.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
viciae USDA 2370]
Length = 498
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 113/410 (27%), Positives = 188/410 (45%), Gaps = 74/410 (18%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-NRA-V 99
A+ + G ++ P+Q I P L +RD+C + TG+GKT S+ LP++ L RA
Sbjct: 16 AIADAGYTTPTPIQAGA----IPPALEKRDICGIAQTGTGKTASFVLPMLTLLEKGRARA 71
Query: 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 159
R R L++ PTR+LA QV + F L+V L +G G+
Sbjct: 72 RMPRTLILEPTRELAAQVAENFEKYGKNHKLNVALLIG-------------------GVS 112
Query: 160 YDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWL 218
++ +D ++L+ D+L+ TPGRL+DH RG + + LV+DE DR+L
Sbjct: 113 FEDQD--RKLERGADVLICTPGRLLDHCE--RGKLLMTGVEILVIDEADRMLDMG----- 163
Query: 219 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ 278
F+P +ER K P+ R + SAT+
Sbjct: 164 --------------------FIPD------------IERIAKMIPFTRQT-LFFSATMPP 190
Query: 279 DPNKLAQLDLHHPLFLTTGE---TRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKC 335
+ KLA L +P+ + + T + +R+ + K L + + +
Sbjct: 191 EIQKLADRFLQNPVRVEVAKPSSTAKTVAQRIVAAHNKDYEKRAVLRDLVRAEEAELKNA 250
Query: 336 IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 395
I+F + + L L+ G + G Q R+ L+ F++G +++LV+SD
Sbjct: 251 IIFCNRKKDVADLFRSLDRHG---FSVGALHGDMDQRSRTTMLQNFKDGNLKLLVASDVA 307
Query: 396 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 445
RG+D+ V++V N+D P + + Y+HR GRT RAG+ G+ FT++ K + K
Sbjct: 308 ARGLDIPDVSHVFNFDIPIHSEDYVHRIGRTGRAGRSGKAFTIVTKSDTK 357
>gi|189425674|ref|YP_001952851.1| DEAD/DEAH box helicase [Geobacter lovleyi SZ]
gi|189421933|gb|ACD96331.1| DEAD/DEAH box helicase domain protein [Geobacter lovleyi SZ]
Length = 439
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 120/425 (28%), Positives = 190/425 (44%), Gaps = 74/425 (17%)
Query: 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQT 93
P++ + +G ++ P+Q + I + DL + TG+GKT ++ALPI+
Sbjct: 7 SFHPKVVAGINALGYTTPTPIQA----QAIPKIMAGHDLMGLAQTGTGKTAAFALPILHR 62
Query: 94 LSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPK 153
L + +RALV+ PTR+LA Q+ D L +GQ + I+
Sbjct: 63 LMQGPRKQVRALVIAPTRELAEQINDAM------------LELGQQTRLKSIT------- 103
Query: 154 LEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA 213
+ G+ +P+ +++L++ V+I+VA PGRL+DHIN L +L LV+DE D++
Sbjct: 104 VYGGVNVNPQ--IEKLKNGVEIVVACPGRLLDHINQGT-IDLTNLELLVLDEADQMFD-- 158
Query: 214 YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273
G L IRR K P R M+ S
Sbjct: 159 ------------------------------MGFLPDIRRI-----LKHLPAQRQT-MLFS 182
Query: 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLI-CESKLKPLYLVALLQSLGE 332
AT+ + LA+ L P T + P S+ L LK L+ LL+
Sbjct: 183 ATMPAEIRGLAREILRDP---ATVQVDNVAPAATVSHALYPVAQHLKTPLLMQLLKHTDT 239
Query: 333 EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS 392
+ ++FT + R+ L G ++ G Q+ R + FR G Q+LV++
Sbjct: 240 DSVLIFTRTKHRAKRVGEQLEKAGYTAASLQ---GNLSQNRRQAAMDGFRNGTYQILVAT 296
Query: 393 DAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VKRFKK 449
D RG+DV V++V+NYD P + YIHR GRT RA + G FT++ ++ VK ++
Sbjct: 297 DIAARGIDVSQVSHVINYDIPDTSEAYIHRIGRTGRAARNGDAFTMVTDEDTLMVKAIER 356
Query: 450 LLQKA 454
L A
Sbjct: 357 TLGAA 361
>gi|358341811|dbj|GAA31574.2| ATP-dependent RNA helicase DDX47/RRP3 [Clonorchis sinensis]
Length = 464
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 115/400 (28%), Positives = 189/400 (47%), Gaps = 70/400 (17%)
Query: 61 ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV 120
+TI L +D+ + TGSGKT ++A+PI+Q L ++ ALV+ PTR+LALQ+K
Sbjct: 44 KTIPQALRGKDVVGLAETGSGKTAAFAIPILQDLISKPKHNF-ALVLTPTRELALQLKSQ 102
Query: 121 FAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180
F + GL V VG + D+ +L S I++ TP
Sbjct: 103 FMDLGEVYGLRVICLVGGQHVEDQTRDL--------------------KVSKYHIIIGTP 142
Query: 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFL 240
GR+ H+ ++ L H+ YLV+DE D++L + + E++ S L
Sbjct: 143 GRICYHLENSKDLRLNHIRYLVLDEADQMLEDTF---------------EDQLSAIIANL 187
Query: 241 PSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR 300
P P + SATL+ KL ++ P+ +
Sbjct: 188 P-----------------------PNHRTYLYSATLSPKVQKLQEICTRSPIIVEVSLEY 224
Query: 301 YKLPERLESYKLICESKLKPLYLVALLQSLGE---EKCIVFTSSVESTHRLCTLLNHFGE 357
K+ + ++ I E + + +YLV L+++ + + IVFT++ + R+ +LLN +
Sbjct: 225 SKVKKLDHAFVFIPEQE-RDVYLVYALKTISKVTNSRTIVFTTTWRESFRIASLLNSLSQ 283
Query: 358 LRI-KIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD---KP 413
L K +G +Q R +L +FR G+ LV++D +RG+D+ V+ ++NYD +P
Sbjct: 284 LLGGKAVPLNGAMQQDKRQNSLFSFRAGQAAFLVATDLASRGLDIPDVDLIINYDVPRRP 343
Query: 414 AY---IKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
++ K YIHR GRTARAG+ GR TL+ R K +
Sbjct: 344 SWSDSAKAYIHRVGRTARAGRSGRAITLVTPYSATRLKAI 383
>gi|417104064|ref|ZP_11961294.1| ATP-dependent RNA helicase protein [Rhizobium etli CNPAF512]
gi|327191069|gb|EGE58122.1| ATP-dependent RNA helicase protein [Rhizobium etli CNPAF512]
Length = 499
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 121/421 (28%), Positives = 185/421 (43%), Gaps = 97/421 (23%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-NRA-V 99
A+ + G S+ P+Q I L RD+C + TG+GKT S+ LP++ L RA
Sbjct: 16 AVADAGYSTPTPIQAGA----IPFALERRDICGIAQTGTGKTASFVLPMLSLLEKGRARA 71
Query: 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 159
R R L++ PTR+LA QV + F L+V L +G G+
Sbjct: 72 RMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIG-------------------GVS 112
Query: 160 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 219
++ +D ++L+ D+L+ TPGRL+DH + + + LV+DE DR+L
Sbjct: 113 FEDQD--RKLERGADVLICTPGRLLDHFERGK-LLMSGVEILVIDEADRMLDMG------ 163
Query: 220 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 279
F+P +ER K P+ R + SAT+ +
Sbjct: 164 -------------------FIPD------------IERIAKLIPFTRQT-LFFSATMPPE 191
Query: 280 PNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVA-------------- 325
KLA L +P ER+E K +K VA
Sbjct: 192 IQKLADRFLQNP-------------ERVEVAKPASAAKTVTQRFVASHSKDYEKRAVLRE 238
Query: 326 LLQSLGEEK-CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 384
L+++ GE K I+F + + L L G + G Q R+ L+ FR+G
Sbjct: 239 LVRAQGELKNAIIFCNRKKDVADLFRSLERHG---FSVGALHGDMDQRSRTTMLQNFRDG 295
Query: 385 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444
+Q+LV+SD RG+D+ V++V N+D P + + Y+HR GRT RAG+ G FTL+ K +
Sbjct: 296 NLQLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFTLVTKRDT 355
Query: 445 K 445
K
Sbjct: 356 K 356
>gi|378826015|ref|YP_005188747.1| ATP-dependent RNA helicase [Sinorhizobium fredii HH103]
gi|365179067|emb|CCE95922.1| ATP-dependent RNA helicase [Sinorhizobium fredii HH103]
Length = 501
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 120/428 (28%), Positives = 192/428 (44%), Gaps = 76/428 (17%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-NRA-V 99
A+ + G ++ P+Q I P L RD+ + TG+GKT S+ LP++ L RA
Sbjct: 16 AVTDAGYATPTPIQAGA----IPPALQRRDILGIAQTGTGKTASFVLPMLTLLEKGRARA 71
Query: 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 159
R R L++ PTR+LA QV + F L++ L +G G+
Sbjct: 72 RMPRTLILEPTRELAAQVAENFDKYGKNHKLNIALLIG-------------------GVS 112
Query: 160 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 219
+D +D ++L+ D+L+ TPGRL+DH + + + LV+DE DR+L
Sbjct: 113 FDEQD--RKLERGADVLICTPGRLLDHFERGK-LLMSGVEILVIDEADRMLDMG------ 163
Query: 220 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 279
F+P +ER K P+ R + SAT+ +
Sbjct: 164 -------------------FIPD------------IERIAKLIPFTRQT-LFFSATMPPE 191
Query: 280 PNKLAQLDLHHPLFLTTGE---TRYKLPERLESYKLICESKLKPLYLVALLQSLGEEK-C 335
KLA L +P + T + +R + + K L L+++ GE K
Sbjct: 192 IQKLADRFLQNPERVEVARPASTAITVTQRFVAAH--GKDYEKRAVLRDLIRAQGELKNA 249
Query: 336 IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 395
I+F + + L L+ G + G Q R L F++G IQ+LV+SD
Sbjct: 250 IIFCNRKKDVAELFRSLDRHG---FSVGALHGDMDQRSRMAMLANFKDGNIQLLVASDVA 306
Query: 396 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 455
RG+D+ V++V N+D P + + Y+HR GRT RAG+ G FT++ K ++K F ++K
Sbjct: 307 ARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGASFTIVTKRDMK-FSDAIEKLI 365
Query: 456 NDSCPIHS 463
+ HS
Sbjct: 366 GQTVEWHS 373
>gi|359429519|ref|ZP_09220543.1| putative helicase [Acinetobacter sp. NBRC 100985]
gi|358234980|dbj|GAB02082.1| putative helicase [Acinetobacter sp. NBRC 100985]
Length = 383
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 112/415 (26%), Positives = 192/415 (46%), Gaps = 71/415 (17%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P+LK A+ +G + + P+Q V + T+ D + TG+GKT ++ + ++ L
Sbjct: 10 LHPQLKKAIDALGFTKMTPIQQKVLKYTLAG----HDAIGRAQTGTGKTAAFLISVINDL 65
Query: 95 SNRAVRCLR------ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
N V+ R AL++ PTR+LALQ++ A+ L + +G
Sbjct: 66 LNNPVQDQRFRGEPRALILAPTRELALQIESDAKALTKFSDLHLVTLLG----------- 114
Query: 149 IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208
G+ +D + + + ++ VDI+VATPGRL+D + + L+ + +LV+DE DR
Sbjct: 115 --------GVDFDKQKKMLD-RNFVDIIVATPGRLIDFVEQKEVW-LDRIEFLVIDEADR 164
Query: 209 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLV 268
LL ++P+V ++ R + K R+
Sbjct: 165 LLD---MGFIPSVKRIVR-----------------YSPFKEQRQT--------------- 189
Query: 269 KMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ 328
++ SAT + D LA+ L P+ + E K +E + E+K K L +L+
Sbjct: 190 -LMFSATFSYDVLNLARQWLFEPVTVEI-EPEQKTNNDVEQRVYVVENKDKYKLLQEILK 247
Query: 329 SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 388
+K ++F + + RL L G K+ SG Q R K L F++GK +
Sbjct: 248 DEPIDKVMIFANRRDQVRRLYDHLKRDG---YKVGMLSGEIAQDKRLKMLDQFKQGKNNI 304
Query: 389 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443
++++D RG+ V+GV++V+N+ P Y+HR GRT RAG G + L +D+
Sbjct: 305 MIATDVAGRGIHVDGVSHVINFTLPEQSDDYVHRIGRTGRAGAQGVSISFLSEDD 359
>gi|167761792|ref|ZP_02433919.1| hypothetical protein BACSTE_00133 [Bacteroides stercoris ATCC
43183]
gi|167700298|gb|EDS16877.1| DEAD/DEAH box helicase [Bacteroides stercoris ATCC 43183]
Length = 372
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 115/418 (27%), Positives = 195/418 (46%), Gaps = 75/418 (17%)
Query: 32 LPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIV 91
L +P LK A++ G ++ P+QV + I L +D+ + TG+GKT ++A+PI+
Sbjct: 6 LNITEPILK-AIEEKGYANPTPIQV----KAIPAALTGKDILGCAQTGTGKTAAFAIPII 60
Query: 92 Q---TLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
Q L NR + ++AL++ PTR+LALQ+ + A + G+ G + +++ L
Sbjct: 61 QHLQVLKNRD-KSIKALILTPTRELALQISECIDDYAKYTQVRHGVIFGGVNQRAQVNML 119
Query: 149 IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT-LEHLCYLVVDETD 207
K VDILVATPGRL+D +N +G+ L+++ + V+DE D
Sbjct: 120 HK---------------------GVDILVATPGRLLDLMN--QGYIHLDNVRHFVLDEAD 156
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L + D LP +T+ F P
Sbjct: 157 RMLDMGF------------------IHDIKRLLPKLPKEKQTL--------FFSATMPDT 190
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
+ + L+ +L + P K+ T + + +E E K K L+++L
Sbjct: 191 I-IALTNSLLKQPVKI------------TITPKSSTVDTIEQTIYFVEKKEKSKLLISIL 237
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
+ +VF+ + + R+ +L+ G I + G + Q+ R L+ F+ GKI+
Sbjct: 238 HKTEGQSVLVFSRTKHNADRIVRVLSKAG---IGSQAIHGNKSQNARQSALENFKTGKIR 294
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 445
V++++D RG+D+ + V+NYD P +TY+HR GRT RAG LG T ++E K
Sbjct: 295 VMIATDIAARGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNLGTALTFCSQEERK 352
>gi|336367410|gb|EGN95755.1| hypothetical protein SERLA73DRAFT_186962 [Serpula lacrymans var.
lacrymans S7.3]
gi|336380126|gb|EGO21280.1| hypothetical protein SERLADRAFT_476265 [Serpula lacrymans var.
lacrymans S7.9]
Length = 779
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 117/411 (28%), Positives = 179/411 (43%), Gaps = 74/411 (18%)
Query: 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA---VRCLRALV 106
S F + ++I L RD+ + TGSGKTL++ +P ++ L + L AL+
Sbjct: 52 SFFVEMTDIQAQSIPVALKGRDVLGAARTGSGKTLAFLIPTLEILYRKKWGPQDGLGALI 111
Query: 107 VLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 166
+ PTR+LA+Q+ +V +I S GL +G ++ DE L
Sbjct: 112 ISPTRELAVQIFEVLRSIGGNHSFSAGLVIGGKNLKDERDRL------------------ 153
Query: 167 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 226
S ++ILVATPGRL+ H++ T GF ++L LV+DE DR+L + L +L
Sbjct: 154 ----SRMNILVATPGRLLQHMDQTFGFESDNLQVLVLDEADRILDMGFSRTLSALL---- 205
Query: 227 SDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQL 286
+ LP + +L + SAT T LA+L
Sbjct: 206 -----------SHLPKSRQTL-----------------------LFSATQTDSVKDLARL 231
Query: 287 DLHHPLFLTTGETRYK--LPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 344
L P + ET + P+ LE + ++CE K L + ++S + K +VF SS +
Sbjct: 232 SLKDPASIGVQETNNESATPKSLEQHYIVCELDKKLDILWSFIKSHLKAKILVFISSGKQ 291
Query: 345 T----HRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMD 400
C + H G + + G Q+Q+ R T F +L ++D RG+D
Sbjct: 292 VRFVFETFCKM--HPG---VPLLHLHGKQKQTTRLATYTRFTSSSHAILFATDIAARGLD 346
Query: 401 VEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLL 451
V+ V+ D P TYIHR GRTAR G+ L E + K L
Sbjct: 347 FPSVDWVLQVDAPEDADTYIHRVGRTARYESAGKGLLFLLPSEEEGMKSAL 397
>gi|384048659|ref|YP_005496676.1| ATP-dependent RNA helicase [Bacillus megaterium WSH-002]
gi|345446350|gb|AEN91367.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
megaterium WSH-002]
Length = 481
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 110/381 (28%), Positives = 172/381 (45%), Gaps = 79/381 (20%)
Query: 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125
L ERD+ + S TGSGKT S+ +P+ + L N +ALV+ PTR+LA QVK+ I
Sbjct: 38 ALEERDVVVKSQTGSGKTASFGIPLCE-LVNWEENKPQALVLTPTRELAAQVKEDITNIG 96
Query: 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD 185
+ G+S A + K+ EL+ I+V TPGR++D
Sbjct: 97 RFKRIKAAAVYGKSPFA--------KQKV-------------ELKQKTHIVVGTPGRVLD 135
Query: 186 HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFG 245
HI LE + YLV+DE D +L + + ++Q LPS
Sbjct: 136 HIEK-ETLALEKIRYLVIDEADEMLNMGFIDQVEAIIQ---------------HLPS--- 176
Query: 246 SLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL-------FLTTGE 298
ER V M+ SATL +D +L++ + P+ LTT
Sbjct: 177 ----------ER----------VTMLFSATLPEDIEELSRKYMKKPVDVEIKANGLTTST 216
Query: 299 TRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGEL 358
+ + + E++ K L + + CI+F + E + L L+ FG
Sbjct: 217 IDHSV--------ITVENERKFELLKDVTTVENPDSCIIFCRTQEQVNTLLDDLDDFGYP 268
Query: 359 RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKT 418
KI G Q R + + F++GK + LV++D RG+D++ + +V+NYD P ++
Sbjct: 269 CDKI---HGAMVQEDRFEVMNDFKKGKFRYLVATDVAARGIDIDNITHVINYDLPLEKES 325
Query: 419 YIHRAGRTARAGQLGRCFTLL 439
Y+HR GRT RAG+ G+ T +
Sbjct: 326 YVHRTGRTGRAGKKGKAITFV 346
>gi|192360552|ref|YP_001981465.1| ATP-dependent RNA helicase RhlB [Cellvibrio japonicus Ueda107]
gi|190686717|gb|ACE84395.1| ATP-dependent RNA helicase RhlB [Cellvibrio japonicus Ueda107]
Length = 439
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 128/461 (27%), Positives = 196/461 (42%), Gaps = 88/461 (19%)
Query: 9 MPVLPWMRSPVDVSLFEDCPLD-----HLPCLDPRLKVALQNMGISSLFPVQVAVWQETI 63
MP PW D+S F P+D H L P L A+ ++G P+Q +++
Sbjct: 1 MPAAPW-----DISEFAVEPVDGKTRFHDFDLSPELMHAIADVGFKYCSPIQA----QSL 51
Query: 64 GPGLFERDLCINSPTGSGKTLSYALPIVQTL------SNRAVRCLRALVVLPTRDLALQV 117
L +D+ + TG+GKT ++ I+ L R RALV+ PTR+L +Q+
Sbjct: 52 PHALQGKDVVGKAQTGTGKTAAFLAAIIDDLLKNPITEKRYAGEARALVIAPTRELVIQI 111
Query: 118 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177
+ A+ L + VG + L ++ VDILV
Sbjct: 112 AEDAKALCKYTDLKIHTLVGGMDYTKQQRRL--------------------HETLVDILV 151
Query: 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRS--DNENRFSD 235
ATPGRL+D + L+ L LV+DE DR+L ++P V Q+ R E+R +
Sbjct: 152 ATPGRLLD-FCGNKDVYLDQLEVLVIDEADRMLD---MGFIPQVRQIVRQTPHREDRQT- 206
Query: 236 ASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLT 295
+ SAT T D + L Q + P+ +
Sbjct: 207 ----------------------------------LFFSATFTDDVHNLVQQWTYKPVTIE 232
Query: 296 TGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHF 355
E R++ + + ++ K L L+Q E IVF + + L L
Sbjct: 233 I-EPESVANARVDQHVYLVSTEEKYTLLYNLIQQEHAESMIVFANRRDECRDLYEKLLRH 291
Query: 356 GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAY 415
G IK SG Q+ R TL AF+ G I+VLV++D RG+ + G+++VVN+ P
Sbjct: 292 G---IKAGLLSGEITQNKRVSTLDAFKNGDIKVLVATDVAGRGIHISGISHVVNFTLPEE 348
Query: 416 IKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF---KKLLQK 453
+ Y+HR GRT RAG+ G + +D+ R +KLL K
Sbjct: 349 PEDYVHRIGRTGRAGKSGTSISFACEDDALRLEPIEKLLGK 389
>gi|163843207|ref|YP_001627611.1| ATP-dependent RNA helicase DBP2 [Brucella suis ATCC 23445]
gi|163673930|gb|ABY38041.1| ATP-dependent RNA helicase DBP2 [Brucella suis ATCC 23445]
Length = 482
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 117/420 (27%), Positives = 194/420 (46%), Gaps = 80/420 (19%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P++ A++ G ++ P+Q I P L +D+ + TG+GKT S+ LP++ L
Sbjct: 9 LSPKVIAAVEAAGYTAPTPIQAGA----IPPALERKDVLGIAQTGTGKTASFVLPMLTLL 64
Query: 95 S-NRA-VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
RA R R L++ PTR+LA QV++ F L+V L +G
Sbjct: 65 EKGRARARMPRTLILEPTRELAAQVEENFVKYGINHRLNVALLIG--------------- 109
Query: 153 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLR 211
G+ ++ ++ ++L+ D+L+ATPGR++DH RG L + LV+DE DR+L
Sbjct: 110 ----GVSFEEQE--RKLERGADVLIATPGRMLDHFE--RGKLLLTGVEILVIDEADRMLD 161
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
F+P +ER K P+ R +
Sbjct: 162 MG-------------------------FIPD------------IERICKLIPFTRQT-LF 183
Query: 272 LSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL---KPLYLVALLQ 328
SAT+ + KL + LH P+ + + + + +L+ K K L L+Q
Sbjct: 184 FSATMPPEITKLTEQFLHSPVRIEVAKASSTA--KTVTQRLVKSGKKDWDKRAVLRDLIQ 241
Query: 329 SLGE--EKCIVFTSSVESTHRLC-TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 385
S G+ + I+F + + L +L H G Q R L +F++GK
Sbjct: 242 SEGDSLKNAIIFCNRKKDVSELFRSLTRH----EFDAGALHGDMDQRARMAMLSSFKDGK 297
Query: 386 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 445
+++LV+SD RG+D+ V++V N+D P + + Y+HR GRT RAG+ G+ FT++ + K
Sbjct: 298 LRLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSDTK 357
>gi|306840451|ref|ZP_07473211.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO2]
gi|306289585|gb|EFM60800.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO2]
Length = 482
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 117/420 (27%), Positives = 194/420 (46%), Gaps = 80/420 (19%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P++ A++ G ++ P+Q I P L +D+ + TG+GKT S+ LP++ L
Sbjct: 9 LSPKVIAAVEAAGYTAPTPIQAGA----IPPALERKDVLGIAQTGTGKTASFVLPMLTLL 64
Query: 95 S-NRA-VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
RA R R L++ PTR+LA QV++ F L+V L +G
Sbjct: 65 EKGRARARMPRTLILEPTRELAAQVEENFVKYGINHRLNVALLIG--------------- 109
Query: 153 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLR 211
G+ ++ ++ ++L+ D+L+ATPGR++DH RG L + LV+DE DR+L
Sbjct: 110 ----GVSFEEQE--RKLERGADVLIATPGRMLDHFE--RGKLLLTGVEILVIDEADRMLD 161
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
F+P +ER K P+ R +
Sbjct: 162 MG-------------------------FIPD------------IERICKLIPFTRQT-LF 183
Query: 272 LSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL---KPLYLVALLQ 328
SAT+ + KL + LH P+ + + + + +L+ K K L L+Q
Sbjct: 184 FSATMPPEITKLTEQFLHSPVRIEVAKASSTA--KTVTQRLVKSGKKDWDKRAVLRDLIQ 241
Query: 329 SLGE--EKCIVFTSSVESTHRLC-TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 385
S G+ + I+F + + L +L H G Q R L +F++GK
Sbjct: 242 SEGDTLKNAIIFCNRKKDVSELFRSLTRH----EFDAGALHGDMDQRARMAMLSSFKDGK 297
Query: 386 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 445
+++LV+SD RG+D+ V++V N+D P + + Y+HR GRT RAG+ G+ FT++ + K
Sbjct: 298 LRLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSDTK 357
>gi|260574781|ref|ZP_05842784.1| DEAD/DEAH box helicase domain protein [Rhodobacter sp. SW2]
gi|259023198|gb|EEW26491.1| DEAD/DEAH box helicase domain protein [Rhodobacter sp. SW2]
Length = 537
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 121/416 (29%), Positives = 187/416 (44%), Gaps = 79/416 (18%)
Query: 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQT 93
LDPR+ A+ G + P+Q + I L RD+ + TG+GKT S+ LP++
Sbjct: 8 ALDPRVLQAVLEAGYETPTPIQA----QAIPHALAGRDVLGIAQTGTGKTASFVLPMITL 63
Query: 94 LSN-RA-VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
L RA R R+LV+ PTR+LA QV + F A L+ L +G
Sbjct: 64 LGQGRAKARMPRSLVLCPTRELAAQVAENFETYAKYSKLTKALLIG-------------- 109
Query: 152 PKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLL 210
G+ + +D L + VD+L+ATPGRL+DH RG L + +VVDE DR+L
Sbjct: 110 -----GVSFGEQDKL--IDRGVDVLIATPGRLLDHHE--RGKLLLTGVQIMVVDEADRML 160
Query: 211 REAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270
F+P +ER F P+ R
Sbjct: 161 DMG-------------------------FIPD------------IERIFSLTPFTRQT-F 182
Query: 271 VLSATLTQDPNKLAQLDLHHPLFL------TTGETRYKLPERLESYKLICESKLKPLYLV 324
SAT+ + ++ L + + + T+ ET + ++ + K L
Sbjct: 183 FYSATMAPEIERITNTFLSNAVKIEVARQATSSETIEQALIQITPTRKDRSFADKRAVLR 242
Query: 325 ALLQSLGEE--KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR 382
AL+++ GE I+F + + L G G QSVR++TL FR
Sbjct: 243 ALIRAEGEACTNAIIFCNRKMDVDVVSKSLKQHG---FNASPIHGDLDQSVRTRTLDGFR 299
Query: 383 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 438
+G + +LV+SD RG+D+ V++V N+D P++ + Y+HR GRT RAG+ G+ FT+
Sbjct: 300 DGTVHLLVASDVAARGLDIPAVSHVFNFDVPSHPEDYVHRIGRTGRAGRKGKAFTI 355
>gi|17987318|ref|NP_539952.1| ATP-dependent RNA helicase DeaD [Brucella melitensis bv. 1 str.
16M]
gi|225852449|ref|YP_002732682.1| ATP-dependent RNA helicase Dbp2 [Brucella melitensis ATCC 23457]
gi|256264057|ref|ZP_05466589.1| ATP-dependent RNA helicase [Brucella melitensis bv. 2 str. 63/9]
gi|260563958|ref|ZP_05834444.1| ATP-dependent RNA helicase [Brucella melitensis bv. 1 str. 16M]
gi|260754681|ref|ZP_05867029.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 6 str. 870]
gi|260883707|ref|ZP_05895321.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 9 str. C68]
gi|265991030|ref|ZP_06103587.1| DEAD/DEAH box helicase domain-containing protein [Brucella
melitensis bv. 1 str. Rev.1]
gi|265994867|ref|ZP_06107424.1| DEAD/DEAH box helicase domain-containing protein [Brucella
melitensis bv. 3 str. Ether]
gi|297248281|ref|ZP_06931999.1| ATP-dependent RNA helicase [Brucella abortus bv. 5 str. B3196]
gi|384211314|ref|YP_005600396.1| ATP-dependent RNA helicase dbp2 [Brucella melitensis M5-90]
gi|384408416|ref|YP_005597037.1| ATP-dependent RNA helicase Dbp2 [Brucella melitensis M28]
gi|384445012|ref|YP_005603731.1| ATP-dependent RNA helicase dbp2 [Brucella melitensis NI]
gi|17982999|gb|AAL52216.1| ATP-dependent RNA helicase dead [Brucella melitensis bv. 1 str.
16M]
gi|225640814|gb|ACO00728.1| ATP-dependent RNA helicase dbp2 [Brucella melitensis ATCC 23457]
gi|260153974|gb|EEW89066.1| ATP-dependent RNA helicase [Brucella melitensis bv. 1 str. 16M]
gi|260674789|gb|EEX61610.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 6 str. 870]
gi|260873235|gb|EEX80304.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 9 str. C68]
gi|262765980|gb|EEZ11769.1| DEAD/DEAH box helicase domain-containing protein [Brucella
melitensis bv. 3 str. Ether]
gi|263001814|gb|EEZ14389.1| DEAD/DEAH box helicase domain-containing protein [Brucella
melitensis bv. 1 str. Rev.1]
gi|263094252|gb|EEZ18122.1| ATP-dependent RNA helicase [Brucella melitensis bv. 2 str. 63/9]
gi|297175450|gb|EFH34797.1| ATP-dependent RNA helicase [Brucella abortus bv. 5 str. B3196]
gi|326408963|gb|ADZ66028.1| ATP-dependent RNA helicase Dbp2 [Brucella melitensis M28]
gi|326538677|gb|ADZ86892.1| ATP-dependent RNA helicase dbp2 [Brucella melitensis M5-90]
gi|349743004|gb|AEQ08547.1| ATP-dependent RNA helicase dbp2 [Brucella melitensis NI]
Length = 482
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 117/420 (27%), Positives = 194/420 (46%), Gaps = 80/420 (19%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P++ A++ G ++ P+Q I P L +D+ + TG+GKT S+ LP++ L
Sbjct: 9 LSPKVIAAVEAAGYTAPTPIQAGA----IPPALERKDVLGIAQTGTGKTASFVLPMLTLL 64
Query: 95 S-NRA-VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
RA R R L++ PTR+LA QV++ F L+V L +G
Sbjct: 65 EKGRARARMPRTLILEPTRELAAQVEENFVKYGINHRLNVALLIG--------------- 109
Query: 153 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLR 211
G+ ++ ++ ++L+ D+L+ATPGR++DH RG L + LV+DE DR+L
Sbjct: 110 ----GVSFEEQE--RKLERGADVLIATPGRMLDHFE--RGKLLLTGVEILVIDEADRMLD 161
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
F+P +ER K P+ R +
Sbjct: 162 MG-------------------------FIPD------------IERICKLIPFTRQT-LF 183
Query: 272 LSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL---KPLYLVALLQ 328
SAT+ + KL + LH P+ + + + + +L+ K K L L+Q
Sbjct: 184 FSATMPPEITKLTEQFLHSPVRIEVAKASST--AKTVTQRLVKSGKKDWDKRAVLRDLIQ 241
Query: 329 SLGE--EKCIVFTSSVESTHRLC-TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 385
S G+ + I+F + + L +L H G Q R L +F++GK
Sbjct: 242 SEGDSLKNAIIFCNRKKDVSELFRSLTRH----EFDAGALHGDMDQRARMAMLSSFKDGK 297
Query: 386 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 445
+++LV+SD RG+D+ V++V N+D P + + Y+HR GRT RAG+ G+ FT++ + K
Sbjct: 298 LRLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSDTK 357
>gi|62289879|ref|YP_221672.1| DEAD/DEAH box helicase [Brucella abortus bv. 1 str. 9-941]
gi|82699806|ref|YP_414380.1| ATP-dependent helicase [Brucella melitensis biovar Abortus 2308]
gi|189024121|ref|YP_001934889.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
S19]
gi|237815373|ref|ZP_04594371.1| ATP-dependent RNA helicase dbp2 [Brucella abortus str. 2308 A]
gi|260545377|ref|ZP_05821118.1| ATP-dependent RNA helicase [Brucella abortus NCTC 8038]
gi|260757905|ref|ZP_05870253.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 4 str. 292]
gi|260761727|ref|ZP_05874070.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 2 str. 86/8/59]
gi|376273333|ref|YP_005151911.1| DEAD/DEAH box helicase [Brucella abortus A13334]
gi|423166951|ref|ZP_17153654.1| hypothetical protein M17_00641 [Brucella abortus bv. 1 str. NI435a]
gi|423170675|ref|ZP_17157350.1| hypothetical protein M19_01208 [Brucella abortus bv. 1 str. NI474]
gi|423173245|ref|ZP_17159916.1| hypothetical protein M1A_00643 [Brucella abortus bv. 1 str. NI486]
gi|423177470|ref|ZP_17164116.1| hypothetical protein M1E_01712 [Brucella abortus bv. 1 str. NI488]
gi|423180106|ref|ZP_17166747.1| hypothetical protein M1G_01206 [Brucella abortus bv. 1 str. NI010]
gi|423183238|ref|ZP_17169875.1| hypothetical protein M1I_01207 [Brucella abortus bv. 1 str. NI016]
gi|423185822|ref|ZP_17172436.1| hypothetical protein M1K_00640 [Brucella abortus bv. 1 str. NI021]
gi|423188960|ref|ZP_17175570.1| hypothetical protein M1M_00642 [Brucella abortus bv. 1 str. NI259]
gi|62196011|gb|AAX74311.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
bv. 1 str. 9-941]
gi|82615907|emb|CAJ10911.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase,
C-terminal:ATP/GTP-binding site motif A (P-loop)
[Brucella melitensis biovar Abortus 2308]
gi|189019693|gb|ACD72415.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
S19]
gi|237790210|gb|EEP64420.1| ATP-dependent RNA helicase dbp2 [Brucella abortus str. 2308 A]
gi|260096784|gb|EEW80659.1| ATP-dependent RNA helicase [Brucella abortus NCTC 8038]
gi|260668223|gb|EEX55163.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 4 str. 292]
gi|260672159|gb|EEX58980.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 2 str. 86/8/59]
gi|363400939|gb|AEW17909.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
A13334]
gi|374540723|gb|EHR12223.1| hypothetical protein M19_01208 [Brucella abortus bv. 1 str. NI474]
gi|374542573|gb|EHR14061.1| hypothetical protein M17_00641 [Brucella abortus bv. 1 str. NI435a]
gi|374542884|gb|EHR14369.1| hypothetical protein M1A_00643 [Brucella abortus bv. 1 str. NI486]
gi|374549951|gb|EHR21393.1| hypothetical protein M1G_01206 [Brucella abortus bv. 1 str. NI010]
gi|374550470|gb|EHR21909.1| hypothetical protein M1I_01207 [Brucella abortus bv. 1 str. NI016]
gi|374550754|gb|EHR22190.1| hypothetical protein M1E_01712 [Brucella abortus bv. 1 str. NI488]
gi|374558618|gb|EHR30011.1| hypothetical protein M1M_00642 [Brucella abortus bv. 1 str. NI259]
gi|374559616|gb|EHR31002.1| hypothetical protein M1K_00640 [Brucella abortus bv. 1 str. NI021]
Length = 482
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 117/420 (27%), Positives = 194/420 (46%), Gaps = 80/420 (19%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P++ A++ G ++ P+Q I P L +D+ + TG+GKT S+ LP++ L
Sbjct: 9 LSPKVIAAVEAAGYTAPTPIQAGA----IPPALERKDVLGIAQTGTGKTASFVLPMLTLL 64
Query: 95 S-NRA-VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
RA R R L++ PTR+LA QV++ F L+V L +G
Sbjct: 65 EKGRARARMPRTLILEPTRELAAQVEENFVKYGINHRLNVALLIG--------------- 109
Query: 153 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLR 211
G+ ++ ++ ++L+ D+L+ATPGR++DH RG L + LV+DE DR+L
Sbjct: 110 ----GVSFEEQE--RKLERGADVLIATPGRMLDHFE--RGKLLLTGVEILVIDEADRMLD 161
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
F+P +ER K P+ R +
Sbjct: 162 MG-------------------------FIPD------------IERICKLIPFTRQT-LF 183
Query: 272 LSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL---KPLYLVALLQ 328
SAT+ + KL + LH P+ + + + + +L+ K K L L+Q
Sbjct: 184 FSATMPPEITKLTEQFLHSPVRIEVAKASST--AKTVTQRLVKSGKKDWDKRAVLRDLIQ 241
Query: 329 SLGE--EKCIVFTSSVESTHRLC-TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 385
S G+ + I+F + + L +L H G Q R L +F++GK
Sbjct: 242 SEGDSLKNAIIFCNRKKDVSELFRSLTRH----EFDAGALHGDMDQRARMAMLSSFKDGK 297
Query: 386 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 445
+++LV+SD RG+D+ V++V N+D P + + Y+HR GRT RAG+ G+ FT++ + K
Sbjct: 298 LRLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSDTK 357
>gi|295670994|ref|XP_002796044.1| DEAD-box ATP-dependent RNA helicase [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226284177|gb|EEH39743.1| DEAD-box ATP-dependent RNA helicase [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 319
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 91/265 (34%), Positives = 128/265 (48%), Gaps = 41/265 (15%)
Query: 175 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 234
I+VATPGRL+DH+ T+GF+L +L YLV+DE DRLL + L +L++
Sbjct: 14 IIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPILDKILKV---------- 63
Query: 235 DASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL 294
LP RR + SAT++ L + L +PL +
Sbjct: 64 -----LPRE-------RRT----------------YLFSATMSSKVESLQRASLSNPLRV 95
Query: 295 TTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNH 354
+ ++Y+ L L K K +YLV LL + I+FT +V T RL LL
Sbjct: 96 SISSSKYQTVSALLQTFLFIPHKYKDIYLVYLLNEFAGQSAIIFTRTVNETQRLAILLRA 155
Query: 355 FGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA 414
G I + G QS R L FR +LV++D RG+D+ V+ V+N+D P
Sbjct: 156 LGFGAIPLH---GQLSQSSRLGALSKFRSRSRDILVATDVAARGLDIPSVDVVLNFDLPP 212
Query: 415 YIKTYIHRAGRTARAGQLGRCFTLL 439
KTYIHR GRTARAG+ G F+ +
Sbjct: 213 DSKTYIHRVGRTARAGKSGHAFSFV 237
>gi|388599353|ref|ZP_10157749.1| ATP-dependent RNA helicase [Vibrio campbellii DS40M4]
Length = 447
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 121/453 (26%), Positives = 200/453 (44%), Gaps = 82/453 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIV-QT 93
LD RL L++ F + Q+ I + +DL +S TGSGKTL++ LP++ ++
Sbjct: 12 LDNRLLKNLKHYD----FKKATDIQQQAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHKS 67
Query: 94 LSNRAVRCL--RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
L ++ RA+++ PTR+LA QV ++ + L +G + D++ L +
Sbjct: 68 LKTKSFSAKDPRAVILAPTRELAKQVYGELRSMLGGLTYDAALILGGENFNDQVKALRRY 127
Query: 152 PKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 211
PK +VATPGRL DH+ R L+ L LV+DE DR+L
Sbjct: 128 PKF---------------------IVATPGRLADHLEH-RSLFLDGLETLVLDEADRMLD 165
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
F P L+ I R R R ++
Sbjct: 166 LG-------------------------FAPE----LRRIHRAAKHR--------RRQTLM 188
Query: 272 LSATLTQ-DPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL 330
SATL + N +A L+ P + G + + + + + L K L +L+
Sbjct: 189 FSATLDHAEVNDIASEMLNAPKRIAIGVSNEEHKDITQKFYLCDHLDHKEAILERVLEEA 248
Query: 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 390
+ I+FT++ + T RL LN E ++K SG Q+ R+ + F ++LV
Sbjct: 249 EYRQVIIFTATRDDTERLTNKLN---EKKLKAVALSGNLNQTQRNTIMSQFERAVFKILV 305
Query: 391 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK---DEVKRF 447
++D +RG+D+ V +V+N+D P + + Y+HR GRT RAG G +L+ D KR
Sbjct: 306 TTDVASRGLDIATVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAVSLVGPKDWDSFKRV 365
Query: 448 KKLLQKADNDSCPIHSIPSSLIESLRPVYKSVR 480
+ LQ+ + S+ E L+ +K ++
Sbjct: 366 ETYLQQ---------DLNFSVFEDLKGKFKGLK 389
>gi|23501822|ref|NP_697949.1| DEAD-box ATP dependent DNA helicase [Brucella suis 1330]
gi|161618894|ref|YP_001592781.1| ATP-dependent RNA helicase DDX17 [Brucella canis ATCC 23365]
gi|256369364|ref|YP_003106872.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella microti
CCM 4915]
gi|260566511|ref|ZP_05836981.1| ATP-dependent RNA helicase [Brucella suis bv. 4 str. 40]
gi|261325038|ref|ZP_05964235.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae
5K33]
gi|261752249|ref|ZP_05995958.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
5 str. 513]
gi|261754908|ref|ZP_05998617.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
3 str. 686]
gi|294852292|ref|ZP_06792965.1| ATP-dependent RNA helicase [Brucella sp. NVSL 07-0026]
gi|376274316|ref|YP_005114755.1| ATP-dependent RNA helicase [Brucella canis HSK A52141]
gi|376280615|ref|YP_005154621.1| DEAD/DEAH box helicase [Brucella suis VBI22]
gi|384224609|ref|YP_005615773.1| DEAD/DEAH box helicase [Brucella suis 1330]
gi|23347756|gb|AAN29864.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella suis
1330]
gi|161335705|gb|ABX62010.1| Probable ATP-dependent RNA helicase DDX17 [Brucella canis ATCC
23365]
gi|255999524|gb|ACU47923.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella microti
CCM 4915]
gi|260156029|gb|EEW91109.1| ATP-dependent RNA helicase [Brucella suis bv. 4 str. 40]
gi|261301018|gb|EEY04515.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae
5K33]
gi|261742002|gb|EEY29928.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
5 str. 513]
gi|261744661|gb|EEY32587.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
3 str. 686]
gi|294820881|gb|EFG37880.1| ATP-dependent RNA helicase [Brucella sp. NVSL 07-0026]
gi|343382789|gb|AEM18281.1| DEAD-box ATP dependent DNA helicase [Brucella suis 1330]
gi|358258214|gb|AEU05949.1| DEAD-box ATP dependent DNA helicase [Brucella suis VBI22]
gi|363402883|gb|AEW13178.1| ATP-dependent RNA helicase [Brucella canis HSK A52141]
Length = 482
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 117/420 (27%), Positives = 194/420 (46%), Gaps = 80/420 (19%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P++ A++ G ++ P+Q I P L +D+ + TG+GKT S+ LP++ L
Sbjct: 9 LSPKVIAAVEAAGYTAPTPIQAGA----IPPALERKDVLGIAQTGTGKTASFVLPMLTLL 64
Query: 95 S-NRA-VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
RA R R L++ PTR+LA QV++ F L+V L +G
Sbjct: 65 EKGRARARMPRTLILEPTRELAAQVEENFVKYGINHRLNVALLIG--------------- 109
Query: 153 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLR 211
G+ ++ ++ ++L+ D+L+ATPGR++DH RG L + LV+DE DR+L
Sbjct: 110 ----GVSFEEQE--RKLERGADVLIATPGRMLDHFE--RGKLLLTGVEILVIDEADRMLD 161
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
F+P +ER K P+ R +
Sbjct: 162 MG-------------------------FIPD------------IERICKLIPFTRQT-LF 183
Query: 272 LSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL---KPLYLVALLQ 328
SAT+ + KL + LH P+ + + + + +L+ K K L L+Q
Sbjct: 184 FSATMPPEITKLTEQFLHSPVRIEVAKASSTA--KTVTQRLVKSGKKDWDKRAVLRDLIQ 241
Query: 329 SLGE--EKCIVFTSSVESTHRLC-TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 385
S G+ + I+F + + L +L H G Q R L +F++GK
Sbjct: 242 SEGDSLKNAIIFCNRKKDVSELFRSLTRH----EFDAGALHGDMDQRARMAMLSSFKDGK 297
Query: 386 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 445
+++LV+SD RG+D+ V++V N+D P + + Y+HR GRT RAG+ G+ FT++ + K
Sbjct: 298 LRLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSDTK 357
>gi|423699092|ref|ZP_17673582.1| ATP-dependent RNA helicase RhlB [Pseudomonas fluorescens Q8r1-96]
gi|387996161|gb|EIK57491.1| ATP-dependent RNA helicase RhlB [Pseudomonas fluorescens Q8r1-96]
Length = 487
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 137/479 (28%), Positives = 205/479 (42%), Gaps = 85/479 (17%)
Query: 10 PVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFE 69
PV+ W V E H L P L A+Q++G P+Q V +G L
Sbjct: 80 PVVAWKLEDFVVEPQEGKTRFHDFKLAPELMHAIQDLGFPYCTPIQAQV----LGYTLAG 135
Query: 70 RDLCINSPTGSGKTLSYALPIVQTL------SNRAVRCLRALVVLPTRDLALQVKDVFAA 123
+D + TG+GKT ++ + I+ L R + RAL++ PTR+L +Q+ A
Sbjct: 136 KDAIGRAQTGTGKTAAFLISIITQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAD 195
Query: 124 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL 183
+ GL+V VG ++ LEA C DILVATPGRL
Sbjct: 196 LTKYTGLNVMTFVGGMDFDKQLKH------LEARHC--------------DILVATPGRL 235
Query: 184 MDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSA 243
+D N L+ + +V+DE DR+L + +P V Q+ R
Sbjct: 236 LD-FNQRGDVHLDMVEVMVLDEADRMLDMGF---IPQVRQIIR----------------- 274
Query: 244 FGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKL 303
+ P ++ SAT T+D LA+ P + E
Sbjct: 275 ----------------QTPPKSERQTLLFSATFTEDVMNLAKQWTTDPAIVEI-EAENVA 317
Query: 304 PERLES--YKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIK 361
E +E Y + K K LY L+ G E+ +VF + + R+ L G +
Sbjct: 318 SENVEQHIYAVAGADKYKLLY--NLVNDNGWERVMVFANRKDEVRRIEERLVRDG---VN 372
Query: 362 IKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIH 421
+ SG Q R KTL+ FREGKI+VLV++D RG+ ++G+++V+N+ P Y+H
Sbjct: 373 AAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVH 432
Query: 422 RAGRTARAGQLGRCFTLLHKD---EVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYK 477
R GRT RAG G + +D ++ + LL K N P P+ L LRPV +
Sbjct: 433 RIGRTGRAGAAGVSISFAGEDDSYQLPSIEALLGKKINCETP----PTHL---LRPVER 484
>gi|34782983|gb|AAH12461.2| DDX51 protein, partial [Homo sapiens]
Length = 186
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 70/164 (42%), Positives = 103/164 (62%), Gaps = 2/164 (1%)
Query: 314 CESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSV 373
C KPL ++ L+ +G + + FT+S E++HRL L+ FG + + E+S
Sbjct: 6 CSLSSKPLVVLHLVLEMGFSRVLCFTNSRENSHRLFLLVQAFGG--VDVAEFSSRYGPGQ 63
Query: 374 RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 433
R LK F +GKIQ+L+S+DA RG+DV+GV VVNYD P Y++TY+HR GRTARAG+ G
Sbjct: 64 RRMILKQFEQGKIQLLISTDATARGIDVQGVELVVNYDAPQYLRTYVHRVGRTARAGKTG 123
Query: 434 RCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYK 477
+ FTLL K + +RF ++L +A H + S L++ L P Y+
Sbjct: 124 QAFTLLLKVQERRFLRMLTEAGAPELQRHELSSKLLQPLVPRYE 167
>gi|148559195|ref|YP_001258911.1| DEAD-box ATP dependent DNA helicase [Brucella ovis ATCC 25840]
gi|148370452|gb|ABQ60431.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella ovis
ATCC 25840]
Length = 482
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 117/420 (27%), Positives = 194/420 (46%), Gaps = 80/420 (19%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P++ A++ G ++ P+Q I P L +D+ + TG+GKT S+ LP++ L
Sbjct: 9 LSPKVIAAVEAAGYTAPTPIQAGA----IPPALERKDVLGIAQTGTGKTASFVLPMLTLL 64
Query: 95 S-NRA-VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
RA R R L++ PTR+LA QV++ F L+V L +G
Sbjct: 65 EKGRARARMPRTLILEPTRELAAQVEENFVKYGIDHRLNVALLIG--------------- 109
Query: 153 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLR 211
G+ ++ ++ ++L+ D+L+ATPGR++DH RG L + LV+DE DR+L
Sbjct: 110 ----GVSFEEQE--RKLERGADVLIATPGRMLDHFE--RGKLLLTGVEILVIDEADRMLD 161
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
F+P +ER K P+ R +
Sbjct: 162 MG-------------------------FIPD------------IERICKLIPFTRQT-LF 183
Query: 272 LSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL---KPLYLVALLQ 328
SAT+ + KL + LH P+ + + + + +L+ K K L L+Q
Sbjct: 184 FSATMPPEITKLTEQFLHSPVRIEVAKASSTA--KTVTQRLVKSGKKDWDKRAVLRDLIQ 241
Query: 329 SLGE--EKCIVFTSSVESTHRLC-TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 385
S G+ + I+F + + L +L H G Q R L +F++GK
Sbjct: 242 SEGDSLKNAIIFCNRKKDVSELFRSLTRH----EFDAGALHGDMDQRARMAMLSSFKDGK 297
Query: 386 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 445
+++LV+SD RG+D+ V++V N+D P + + Y+HR GRT RAG+ G+ FT++ + K
Sbjct: 298 LRLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSDTK 357
>gi|429085612|ref|ZP_19148582.1| ATP-dependent RNA helicase RhlE [Cronobacter condimenti 1330]
gi|426545220|emb|CCJ74623.1| ATP-dependent RNA helicase RhlE [Cronobacter condimenti 1330]
Length = 474
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 122/438 (27%), Positives = 198/438 (45%), Gaps = 77/438 (17%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G + P+Q ++ I L +DL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPEILRAIAEQGYNEPTPIQ----RQAIPVVLSGKDLMASAQTGTGKTAGFTLPLLQRL 63
Query: 95 S----NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIK 150
+ + R +RAL++ PTR+LA QV G V + S +I L+
Sbjct: 64 TANEPQKGRRPVRALILTPTRELAAQV---------------GENVREYSKYLDIRSLV- 107
Query: 151 RPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDR 208
+ G+ +P+ + +L+ VD+L+ATPGRL+D H NA + L+ + LV+DE DR
Sbjct: 108 ---VFGGVSINPQ--MMKLRGGVDVLIATPGRLLDLEHQNAVK---LDQVEVLVLDEADR 159
Query: 209 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLV 268
+L G + IRR K P+
Sbjct: 160 ML--------------------------------DMGFIHDIRRVLA------KLPPKRQ 181
Query: 269 KMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ 328
++ SAT + D LA+ L +P + R ++ + + K K L L+
Sbjct: 182 NLLFSATFSDDIKGLAEKLLRNPEEVAVAR-RNTASGQVTQHVHFVDKKRKRELLSYLIG 240
Query: 329 SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 388
++ +VFT + + L LN G I G + Q R++ L F+ G I+V
Sbjct: 241 DGNWQQVLVFTRTKHGANHLAEQLNKDG---ITAAAIHGNKSQGARTRALADFKTGGIRV 297
Query: 389 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFK 448
LV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE K +
Sbjct: 298 LVATDIAARGIDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLR 357
Query: 449 KLLQKADNDSCPIHSIPS 466
+++ P +IP
Sbjct: 358 D-IERVLKREIPRMAIPG 374
>gi|302038923|ref|YP_003799245.1| DEAd-box RNA helicase [Candidatus Nitrospira defluvii]
gi|300606987|emb|CBK43320.1| DEAD-box RNA helicase [Candidatus Nitrospira defluvii]
Length = 576
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 111/432 (25%), Positives = 196/432 (45%), Gaps = 66/432 (15%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+ L L+ +G P+Q +E I P L RDL + TG+GKT ++ALP++Q +
Sbjct: 26 LEASLLTTLEALGYEEPTPIQ----REAIPPLLEGRDLLGQAATGTGKTAAFALPLLQRI 81
Query: 95 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
++ + ALV++PTR+LA+QV + + + V LA L
Sbjct: 82 AHGPRQRPTALVLVPTRELAVQVSEAVQRYGKELRIGV-LA------------------L 122
Query: 155 EAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY 214
G P+ LQ L+ V+++VATPGR +DH+ + L L +V+DE D +L +
Sbjct: 123 YGGQAMGPQ--LQALRRGVEVIVATPGRALDHLR-RKTLKLADLQVVVLDEADEMLDMGF 179
Query: 215 QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274
L +L+ T + + A+ +P S+ R +K +
Sbjct: 180 ADDLDAILEQTPAGKQTALFSAT--MPPRIASIAR----------------RHLKNPVDV 221
Query: 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEK 334
T+ ++P K R++ + + K L +L +
Sbjct: 222 TIAREPVKAGAAP------------------RVQQTAYVVARQHKVSALARVLDIATPKS 263
Query: 335 CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394
+VF + + LN G + + G Q R + ++AFR G+ ++LV++D
Sbjct: 264 ALVFCRTRLEVDEVTAALNGRG---YRAEAIHGGMSQVQRDRVMQAFRSGQTELLVATDV 320
Query: 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 454
RG+D+ V++V+NYD P+ ++ Y+HR GRT RAG+ G T++ E +R + +++
Sbjct: 321 AARGLDIPSVSHVINYDLPSSLEVYVHRIGRTGRAGREGAAMTIIEPRE-QRLLRAVEQH 379
Query: 455 DNDSCPIHSIPS 466
+ ++PS
Sbjct: 380 TKAKITVAAVPS 391
>gi|330811536|ref|YP_004355998.1| ATP-dependent RNA helicase [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327379644|gb|AEA70994.1| ATP-dependent RNA helicase [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 487
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 137/479 (28%), Positives = 205/479 (42%), Gaps = 85/479 (17%)
Query: 10 PVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFE 69
PV+ W V E H L P L A+Q++G P+Q V +G L
Sbjct: 80 PVVAWKLEDFVVEPQEGKTRFHDFKLAPELMHAIQDLGFPYCTPIQAQV----LGYTLAG 135
Query: 70 RDLCINSPTGSGKTLSYALPIVQTL------SNRAVRCLRALVVLPTRDLALQVKDVFAA 123
+D + TG+GKT ++ + I+ L R + RAL++ PTR+L +Q+ A
Sbjct: 136 KDAIGRAQTGTGKTAAFLISIITQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAD 195
Query: 124 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL 183
+ GL+V VG ++ LEA C DILVATPGRL
Sbjct: 196 LTKYTGLNVMTFVGGMDFDKQLKH------LEARHC--------------DILVATPGRL 235
Query: 184 MDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSA 243
+D N L+ + +V+DE DR+L + +P V Q+ R
Sbjct: 236 LD-FNQRGDVHLDMVEVMVLDEADRMLDMGF---IPQVRQIIR----------------- 274
Query: 244 FGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKL 303
+ P ++ SAT T+D LA+ P + E
Sbjct: 275 ----------------QTPPKSERQTLLFSATFTEDVMNLAKQWTTDPAIVEI-EAENVA 317
Query: 304 PERLES--YKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIK 361
E +E Y + K K LY L+ G E+ +VF + + R+ L G +
Sbjct: 318 SENVEQHIYAVAGADKYKLLY--NLVNDNGWERVMVFANRKDEVRRIEERLVRDG---VN 372
Query: 362 IKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIH 421
+ SG Q R KTL+ FREGKI+VLV++D RG+ ++G+++V+N+ P Y+H
Sbjct: 373 AAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVH 432
Query: 422 RAGRTARAGQLGRCFTLLHKD---EVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYK 477
R GRT RAG G + +D ++ + LL K N P P+ L LRPV +
Sbjct: 433 RIGRTGRAGAAGVSISFAGEDDSYQLPSIEALLGKKINCETP----PTHL---LRPVER 484
>gi|372272242|ref|ZP_09508290.1| ATP-dependent RNA helicase RhlB, partial [Marinobacterium stanieri
S30]
Length = 599
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 126/431 (29%), Positives = 187/431 (43%), Gaps = 72/431 (16%)
Query: 14 WMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLC 73
W DV++ E H L L A+ ++ P+Q A TI L RDL
Sbjct: 43 WTPQSFDVAIAEGKRRFHDFGLPDVLMRAIADLKFEYCTPIQAA----TIPHALNGRDLI 98
Query: 74 INSPTGSGKTLSYALPIVQTLSNRAV------RCLRALVVLPTRDLALQVKDVFAAIAPA 127
+ TG+GKT ++ + I+ L + + RAL++ PTR+LALQ+ ++
Sbjct: 99 GKAQTGTGKTAAFLIGIITDLLDFPLPGEPRKNEPRALIIAPTRELALQIASDAEGLSAH 158
Query: 128 VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHI 187
LSV VG + L +P VDILVATPGRL+D +
Sbjct: 159 ADLSVVSLVGGMDYERQRKALAAKP--------------------VDILVATPGRLIDFV 198
Query: 188 NATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSL 247
++ L + LV+DE DR+L + F+P +
Sbjct: 199 R-SKEVDLYQVEVLVLDEADRML-------------------------SMGFIPDVRTII 232
Query: 248 KTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 307
+ R G +R ++ SAT T D +LA+ P+ + E+ +K + +
Sbjct: 233 RQTPRKGADRQ----------TLLYSATFTDDVMRLAEQWTQDPVTIEI-ESEHKTTDNV 281
Query: 308 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 367
+ S K L L+ G E+ IVF + T L L+ G IK SG
Sbjct: 282 AQKVFLVSSNEKYQLLRNYLRINGIERAIVFGNRRHETRALADRLSKDG---IKAALMSG 338
Query: 368 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 427
Q+ R +TL+ FR GKI+VLV++D RG+ ++GV +V+NY P Y+HR GRT
Sbjct: 339 EIPQNKRLRTLEDFRNGKIEVLVATDVAGRGIHIDGVTHVINYQLPEDADDYVHRIGRTG 398
Query: 428 RAGQLGR--CF 436
RAG G CF
Sbjct: 399 RAGATGTSICF 409
>gi|448103925|ref|XP_004200160.1| Piso0_002734 [Millerozyma farinosa CBS 7064]
gi|359381582|emb|CCE82041.1| Piso0_002734 [Millerozyma farinosa CBS 7064]
Length = 437
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 129/414 (31%), Positives = 187/414 (45%), Gaps = 71/414 (17%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCIN-SPTGSGKTLSYALPIVQTLSNRAVR 100
AL +M I + +Q A P + + CI + TGSGKT+++A PI+ S
Sbjct: 15 ALNSMKIYTPTAIQKACI-----PKVLKGHDCIGGAKTGSGKTIAFASPILTKWSEDPY- 68
Query: 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY 160
+ LV+ PTR+LALQ+ + FAA+ + + V + VG I + EL +RP
Sbjct: 69 GIYGLVLTPTRELALQIAEQFAALGATMNIKVCVIVGGDDIVKQALELQRRPH------- 121
Query: 161 DPEDVLQELQSAVDILVATPGRLMDHINATRGFT---LEHLCYLVVDETDRLLREAYQAW 217
I++ATPGRL DHI + T L + YLV+DE DRLL ++ +
Sbjct: 122 --------------IVIATPGRLADHILNSGEDTICGLRRVKYLVLDEADRLLSNSFGSD 167
Query: 218 LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLT 277
L + ENR T L +A TI R K+KP P
Sbjct: 168 LERCFGVL-PKPENR----QTLLFTA-----TI--TDAVRSLKEKPVPE----------- 204
Query: 278 QDPNKLAQLDLHHPLFLTTGET--RYKLPERLESYKLICESKLKPLYLVALLQSLGEEK- 334
KL P+F+ +T +P L L S +K YL LL EK
Sbjct: 205 ---GKL-------PVFVNEVDTVENIAIPSTLSIKYLFVPSYVKEAYLHNLLTLPEYEKT 254
Query: 335 -CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 393
I+F V TH L +L ++ QS R +L F+ ++L+++D
Sbjct: 255 TTIIF---VNRTHTAELLRRMLRKLDFRVASLHSEMPQSERVNSLHRFKANAARILIATD 311
Query: 394 AMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 447
+RG+D+ VN VVNYD PA +IHR GRTARAG+ G +++ + +V R
Sbjct: 312 VASRGLDIPDVNLVVNYDIPADPDDFIHRVGRTARAGRKGDSISIVAEKDVNRI 365
>gi|344228534|gb|EGV60420.1| dead Box protein Dhh1p [Candida tenuis ATCC 10573]
Length = 501
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 118/421 (28%), Positives = 188/421 (44%), Gaps = 69/421 (16%)
Query: 46 MGI-SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA 104
MGI + F + +E+I L RD+ + G+GKT S+ +P +Q + + V ++
Sbjct: 43 MGIFEAGFEKPSPIQEESIPIALTGRDILARAKNGTGKTASFVIPTLQMIKPK-VNKIQG 101
Query: 105 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 164
L+++PTR+LALQ V + +G+ ++ G + + D+I L DP
Sbjct: 102 LILVPTRELALQTSQVVRTLGKHLGIQCMVSTGGTPVKDDILRL-----------NDP-- 148
Query: 165 VLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYL-VVDETDRLLREAYQAWLPTVLQ 223
V +LV TPGR++D A+R C L V+DE D++L ++ + +L+
Sbjct: 149 --------VHVLVGTPGRILDL--ASRNIADMSECSLFVMDEADKMLSREFKRTIERILE 198
Query: 224 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 283
L S+ ++ A+ +P VK + L NK
Sbjct: 199 LFPSNRQSLLFSAT--------------------------FPLAVKSFMEEHL----NKP 228
Query: 284 AQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVE 343
+++L L L Y + E KL C L L L + I+F +
Sbjct: 229 YEINLMDELTLKGISQFYAFVD--EKQKLHC--------LNTLFSKLQINQSIIFCN--- 275
Query: 344 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG 403
ST+R+ L EL Q R+K FR GK++ LV SD +TRG+D++
Sbjct: 276 STNRVELLAKKITELGYSCYYSHARMPQQARNKVFHEFRMGKVRNLVCSDLLTRGIDIQA 335
Query: 404 VNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHS 463
VN V+N+D P +TY+HR GR+ R G LG LL D+ K+ Q+ + PI S
Sbjct: 336 VNVVINFDFPKTAETYLHRIGRSGRFGHLGLAVNLLSWDDRYNLYKIEQELGTEIKPIPS 395
Query: 464 I 464
+
Sbjct: 396 V 396
>gi|389795816|ref|ZP_10198925.1| DNA/RNA helicase [Rhodanobacter fulvus Jip2]
gi|388430147|gb|EIL87341.1| DNA/RNA helicase [Rhodanobacter fulvus Jip2]
Length = 622
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 115/411 (27%), Positives = 195/411 (47%), Gaps = 70/411 (17%)
Query: 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQT 93
L P + L ++G S P+Q A TI P L RD+ + TG+GKT ++ALPI+
Sbjct: 19 ALHPDVLRVLADVGYESPSPIQAA----TIPPLLEGRDVLGQAQTGTGKTAAFALPILSR 74
Query: 94 LSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRP 152
++ RA + +ALV+ PTR+LA+QV + F A + G V G
Sbjct: 75 INPRAGKP-QALVLAPTRELAIQVAEAFQRYAAHIPGFQVLPIYG--------------- 118
Query: 153 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE 212
G Y P+ L L+ V ++V TPGR++DH++ L L +LV+DE D +LR
Sbjct: 119 ----GQSYGPQ--LHALKRGVHVVVGTPGRVIDHLDKGT-LDLSELRFLVLDEADEMLRM 171
Query: 213 AYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVL 272
+ + VL T E + + S +P+ IR+ +R KD V++++
Sbjct: 172 GFIDDVEKVLHAT--PPERQVALFSATMPA------VIRKI-AQRHLKDP-----VEVII 217
Query: 273 SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGE 332
++ T N +H + +G +KL L +L++
Sbjct: 218 KSSTTTAAN------IHQRYWFVSG-----------MHKLDA--------LTRILEAEPF 252
Query: 333 EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS 392
+ I+F + ++T L L G + +G Q+ R + ++ ++GK+ +LV++
Sbjct: 253 DAMIIFARTKQATEELAGKLQARG---LAAAAINGDIAQAQRERVIQQLKDGKLDILVAT 309
Query: 393 DAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443
D RG+DV+ +++V+N+D P ++Y+HR GRT RAG+ G + E
Sbjct: 310 DVAARGLDVDRISHVLNFDIPYDTESYVHRIGRTGRAGRSGEAILFVSPRE 360
>gi|323358213|ref|YP_004224609.1| superfamily II DNA and RNA helicase [Microbacterium testaceum
StLB037]
gi|323274584|dbj|BAJ74729.1| superfamily II DNA and RNA helicase [Microbacterium testaceum
StLB037]
Length = 585
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 129/455 (28%), Positives = 205/455 (45%), Gaps = 76/455 (16%)
Query: 17 SPVDVSLFEDCPLDHLP----CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDL 72
+PVD + E P + L LD + AL+++G + +Q A TI L RD+
Sbjct: 5 NPVDSAEAETAP-ETLTFADLGLDANVLKALKDVGYETPSAIQAA----TIPVLLQGRDV 59
Query: 73 CINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV-GLS 131
+ TG+GKT ++ALP++ + + +ALV+ PTR+LALQV + F A + G+S
Sbjct: 60 VGLAQTGTGKTAAFALPVLSQMET-GHKNPQALVLAPTRELALQVCEAFEKYAAHIKGVS 118
Query: 132 VGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR 191
V G ++S L + VD++V TPGR+MDH++
Sbjct: 119 VLPVYGGQGYGQQLSAL---------------------RRGVDVIVGTPGRIMDHLDKGT 157
Query: 192 GFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIR 251
L L +LV+DE D +L+ + + T+L T S + A+ +P+ IR
Sbjct: 158 -LDLSELKFLVLDEADEMLKMGFAEDVETILADTPSTKQVALFSAT--MPA------QIR 208
Query: 252 RCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYK 311
R +SA DP ++ T +T+ +
Sbjct: 209 R-------------------ISAQYLNDPEEI------------TVKTKTTTSANITQRY 237
Query: 312 LICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQ 371
LI + K L +L+ E IVFT + T + L G I +G Q
Sbjct: 238 LIVSYQQKIDALTRILEVENFEGMIVFTRTKNETETVAEKLRARGYTAAAI---NGDIAQ 294
Query: 372 SVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ 431
R +T+ + GK+ +LV++D RG+DVE +++VVNYD P ++Y+HR GRT RAG+
Sbjct: 295 VQRERTVNQLKSGKLDILVATDVAARGLDVERISHVVNYDLPIDTESYVHRIGRTGRAGR 354
Query: 432 LGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPS 466
G + + E +R ++KA S+PS
Sbjct: 355 TGDAISFVTPRE-RRMLTAIEKATRQPLTEMSLPS 388
>gi|116252340|ref|YP_768178.1| cold-shock DEAD-box protein A [Rhizobium leguminosarum bv. viciae
3841]
gi|115256988|emb|CAK08082.1| putative cold-shock DeaD-box protein A (ATP-dependent RNA helicase)
[Rhizobium leguminosarum bv. viciae 3841]
Length = 521
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 141/507 (27%), Positives = 214/507 (42%), Gaps = 115/507 (22%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-NRA-V 99
A+ + G + P+Q I L RD+C + TG+GKT S+ LP++ L RA
Sbjct: 22 AVTDAGYTIPTPIQAGA----IPFALERRDICGIAQTGTGKTASFVLPMLSLLEKGRARA 77
Query: 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 159
R R L++ PTR+LA QV + F L+V L +G G+
Sbjct: 78 RMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIG-------------------GVS 118
Query: 160 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 219
++ +D ++L+ D+L+ TPGRL+DH + + + LV+DE DR+L
Sbjct: 119 FEDQD--RKLERGADVLICTPGRLLDHFERGK-LLMSGVEILVIDEADRMLDMG------ 169
Query: 220 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 279
F+P +ER K P+ R + SAT+ +
Sbjct: 170 -------------------FIPD------------IERIAKMIPFTRQT-LFFSATMPSE 197
Query: 280 PNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVA-------------- 325
KLA L +P ER+E K + VA
Sbjct: 198 IQKLADRFLQNP-------------ERIEVAKPASAAATVTQRFVASHGKDYEKRAVLRE 244
Query: 326 LLQSLGEEK-CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 384
L+++ E K I+F + + L L G + G Q R+ TL++FR+G
Sbjct: 245 LVRAQTELKNAIIFCNRKKDVADLFRSLERHG---FSVGALHGDMDQRSRTMTLQSFRDG 301
Query: 385 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444
+Q+LV+SD RG+D+ V++V N+D P + + Y+HR GRT RAG+ G FTL+ K +
Sbjct: 302 NLQLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFTLVTKRDT 361
Query: 445 K---RFKKLL-QKADNDSCPIHSIP---SSLIESLRPVYKSVRGGISDEAFWKVGCDLHG 497
K +KL+ QK + S + S+P +S RP S G D G
Sbjct: 362 KFVDAIEKLIGQKVEWLSGDLTSLPPPAEDSRDSERPRRNSRERGARD-----------G 410
Query: 498 VNRVRRSFYQTSGDRALGKGMVAFCSN 524
R R DR G+G A S+
Sbjct: 411 AGRDRAPRENGDKDRGRGRGNRAAASH 437
>gi|198437354|ref|XP_002125842.1| PREDICTED: similar to CG9143 CG9143-PA [Ciona intestinalis]
Length = 719
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 117/449 (26%), Positives = 198/449 (44%), Gaps = 82/449 (18%)
Query: 69 ERDLCINSPTGSGKTLSYALPIVQTL---------------------------------- 94
+RD+ + TGSGKTL++ +P++ L
Sbjct: 201 KRDILGAAETGSGKTLAFGIPLLHHLMEDRERNLLENTENAEIDEDDEHMSDFEDAEPVS 260
Query: 95 -----SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
+ + L ALV+ PTR+LA+QVK +A L + VG + +I L
Sbjct: 261 KEEIEETQPTKALPALVLTPTRELAIQVKKHLTQVAKHTKLWSTVVVGGMAQQKQIRLLN 320
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF--TLEHLCYLVVDETD 207
K P DI++ATPGRL + + + + T+ L YLV+DE D
Sbjct: 321 KEP---------------------DIVIATPGRLWELLESGHPYLSTIHKLRYLVIDEAD 359
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L + L +L++ + TF+ SA +L T+ F +
Sbjct: 360 RMLEHGHFEELNKLLEVINLKKSK--TKRQTFIFSA--TLTTVHFTPNRPNFPTQASSNT 415
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
LS + ++ + + F+ T+ E+L K+IC+ K K YL +
Sbjct: 416 KDTKLSKLM-------KKIGVRNKPFVADLTTKKLTAEKLSEAKIICQPKEKDFYLYYFI 468
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFG--ELRIKIKEYSGLQRQSVRSKTLKAFREGK 385
+S + ++FT+S++ L +L+ G L I K +Q R K L F+E
Sbjct: 469 KS-HPGRTLIFTNSIDCIFHLSGVLDALGCNPLHIHAK-----MQQRQRLKHLDRFQENP 522
Query: 386 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 445
++++SD RG+D+ GV V++Y P ++TYIHR+GR+AR+G+ G + DE+
Sbjct: 523 NAIMIASDVAARGLDIPGVKYVIHYQVPRTMETYIHRSGRSARSGEDGLSLLFVSSDEMS 582
Query: 446 RFKKLLQKADN-DSCPIHSIPSSLIESLR 473
+K++ + D D P+ I S + ++R
Sbjct: 583 FYKRICRSLDKEDGLPLFLINDSYMAAIR 611
>gi|389722095|ref|ZP_10188778.1| ATP-dependent RNA helicase [Rhodanobacter sp. 115]
gi|388443987|gb|EIM00117.1| ATP-dependent RNA helicase [Rhodanobacter sp. 115]
Length = 437
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 114/426 (26%), Positives = 185/426 (43%), Gaps = 71/426 (16%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P L AL G + P+Q A E L DL + TG+GKT ++ALP++Q L
Sbjct: 8 LVPTLLRALAEQGYAEPTPIQAAAIPEV----LAGHDLLAAAQTGTGKTAAFALPLLQRL 63
Query: 95 SNRAV---RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
+ R R L++ PTR+LA Q+ D A A + + + G
Sbjct: 64 IDAPAATPRRPRVLILTPTRELAAQIDDNLRAYAKYLHVRSAVIFG-------------- 109
Query: 152 PKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 211
G+ P+ + L+ VD+++ATPGRL+DH+ R L + LV+DE DR+L
Sbjct: 110 -----GVGMGPQ--INALRRGVDVVIATPGRLIDHMQ-QRNIELSGVDVLVLDEADRMLD 161
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
+ L +L + A+ P +++ +R+ PR V +
Sbjct: 162 MGFLPALKRILTAVPKQRQTLLFSATFAAPIKALAMQFMRQ------------PREVSV- 208
Query: 272 LSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLG 331
PN + QL HH + S+ + L L L Q
Sbjct: 209 ------SPPNTVTQLITHH-------------------VHPVDASRKRDLLLHVLSQD-S 242
Query: 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVS 391
+ +VF+ + +L L G ++ G + Q+ R++ L F+ G++ VLV+
Sbjct: 243 RRQTLVFSRTKHGADKLVKFLEVSG---LRAAAIHGNKSQNARTRALSDFKSGRVTVLVA 299
Query: 392 SDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLL 451
+D RG+D++ + V+N+D P + Y+HR GRT RAG G +L+ DE + +
Sbjct: 300 TDIAARGIDIDQLPVVINHDLPMVAEDYVHRIGRTGRAGSEGLALSLVSHDESGLLRDIR 359
Query: 452 QKADND 457
+ D D
Sbjct: 360 KLLDQD 365
>gi|430813904|emb|CCJ28790.1| unnamed protein product [Pneumocystis jirovecii]
Length = 464
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 121/448 (27%), Positives = 205/448 (45%), Gaps = 78/448 (17%)
Query: 1 MEEAKKKSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQ 60
+ K+++ P++P F++C L H ++ KV+++ A+
Sbjct: 29 LHHPKQQADPLIPHT--------FKECGL-HAWLIETLKKVSIKK---------PTAIQA 70
Query: 61 ETIGPGLFERDLCINSP-TGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKD 119
IGP + E CI S TGSGKT+++ LPI+Q LS AL++ PTR+LALQ+ D
Sbjct: 71 TCIGP-ILEGQNCIGSAKTGSGKTMAFTLPIIQILSQDPYGVF-ALILTPTRELALQISD 128
Query: 120 VFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179
A I ++ L +G + + L+KRP I++AT
Sbjct: 129 QLAIIGTSINLKHTTIIGGVDMITQALILVKRP---------------------HIVIAT 167
Query: 180 PGRLMDHINATRGFTL---EHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDA 236
PGRL DHI ++ T+ + + +LV+DE DRLL + + +++ ENR
Sbjct: 168 PGRLADHIRSSGQETINAFKRVRFLVLDEADRLLTPNFSKDMQECIRIL-PKAENR--QT 224
Query: 237 STFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT 296
F + +++ ++ E G K P + V+ +++T P+ L Q + P +
Sbjct: 225 LLFTATITDAIRKLQTQSSESGKK----PLFLYNVIKSSVT-IPSSLIQTYIFIPSHVK- 278
Query: 297 GETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG 356
E+Y LY + Q E+ IVFT+ + LC + F
Sbjct: 279 -----------ETY----------LYRIFNTQEYKEKSTIVFTNRTRTAELLCRM---FC 314
Query: 357 ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYI 416
L +K+ Q R ++L+ F+ ++L+++D +RG+D+ V ++NYD P
Sbjct: 315 ILELKVTALHSEMPQKKRIQSLERFKAEASKILIATDVASRGLDIPFVKLIINYDVPKDP 374
Query: 417 KTYIHRAGRTARAGQLGRCFTLLHKDEV 444
YIHR GRTARA + G T + + ++
Sbjct: 375 NDYIHRVGRTARAEKSGESITFVSQRDI 402
>gi|323493979|ref|ZP_08099095.1| DNA and RNA helicase [Vibrio brasiliensis LMG 20546]
gi|323311606|gb|EGA64754.1| DNA and RNA helicase [Vibrio brasiliensis LMG 20546]
Length = 412
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 119/410 (29%), Positives = 189/410 (46%), Gaps = 78/410 (19%)
Query: 67 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126
L ++D+ + TGSGKTL+Y LP+V+ L +A +A+V++PTR+LA+QV V +A
Sbjct: 35 LADKDVLALANTGSGKTLAYTLPLVEKL--KANSEQQAVVLVPTRELAMQVSQVINQLAS 92
Query: 127 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDH 186
+GLS G D + Q L+ ILVAT GRL+D
Sbjct: 93 PLGLSAVCLCG---------------------GVDKAEQQQALEQQPQILVATTGRLIDL 131
Query: 187 INATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSD--ASTFLPSAF 244
IN G +L + YLV+DE DRLL + W P V + + + R + ++TF
Sbjct: 132 IN--DGLSLSKVAYLVLDEADRLLDMGF--W-PDVQTIAENTAQKRQTAMFSATFSEQLK 186
Query: 245 GSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLP 304
T+ R +E LSA NK D+ L+L ++ K
Sbjct: 187 QQAGTLMRSAIE---------------LSAHQNNSTNK----DIAERLYLVNKGSKTK-- 225
Query: 305 ERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKE 364
L+ L++ ++ +VF + E+ L LN G I +
Sbjct: 226 -----------------ALIELIKQHQWKQVLVFIGAKENADGLNKKLNKAG---IASQA 265
Query: 365 YSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAG 424
G + Q+ R + L F+ G+ QVL+++D + RG+ +E + V+N++ P + +TY+HR G
Sbjct: 266 LHGNKDQTEREQILAQFKSGQSQVLIATDLLARGVHIEQLPAVINFELPMHAETYVHRVG 325
Query: 425 RTARAGQLGRCFTLLHKDEVKRFKKL-------LQKADNDSCPIHSIPSS 467
RTARAG+ G +L+ E + + L AD + P+ PS+
Sbjct: 326 RTARAGEQGIALSLVCHGETEALNAIRVLTQRELPLADLEGFPVTDKPST 375
>gi|145476289|ref|XP_001424167.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124391230|emb|CAK56769.1| unnamed protein product [Paramecium tetraurelia]
Length = 475
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 111/405 (27%), Positives = 182/405 (44%), Gaps = 80/405 (19%)
Query: 60 QETIGPGLFE-RDLCINSPTGSGKTLSYALP-IVQTLSNRAVRCLRALVVLPTRDLALQV 117
Q+ I P +F+ D+ + TGSGKTL+YALP I+ + V R LV+ PTR+LA Q+
Sbjct: 129 QQAIMPLIFDGHDVIAIAETGSGKTLAYALPGIMHLQAQPPVAGPRILVMAPTRELAQQI 188
Query: 118 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177
+ + A L G I +P + P+ +++
Sbjct: 189 QTQYDLFAKTCCLYGG---------------IPKPHQYVSLSETPQ-----------VII 222
Query: 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 237
ATPGRL+D I G TL+ + +V+DE DR+L ++ + VL+ R D + F A+
Sbjct: 223 ATPGRLLDFIKG--GLTLKSITQVVLDEADRMLDMGFEDQIRDVLKEVRKDRQTLFFSAT 280
Query: 238 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 297
+P+ V+ + ++ +QD P+FL G
Sbjct: 281 --------------------------WPQEVQRLANSLCSQD-----------PIFLQLG 303
Query: 298 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 357
E + + + +I K L+ + ++K +VF T +L L+ G
Sbjct: 304 ERGLSVNKNITQSVIIAGGN-KFEQLIEYFNQIKDKKVLVFCQKKIDTQKLEYRLSQHG- 361
Query: 358 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417
+ + G +Q+ R ++ FR GK+ L++++ +RG+DV V+ V+NYD P I+
Sbjct: 362 --VNARYLHGDLKQNQRDYIMQDFRNGKVNCLITTNLASRGLDVSDVDVVINYDFPENIE 419
Query: 418 TYIHRAGRTARAGQLGRCFTL---------LHKDEVKRFKKLLQK 453
YIHR GRT RAG+ G + L D +K FK+ Q+
Sbjct: 420 DYIHRIGRTGRAGKKGEALSFIQPRDLDYRLKDDLIKVFKQSSQE 464
>gi|375263823|ref|YP_005026053.1| DEAD-box ATP dependent DNA helicase [Vibrio sp. EJY3]
gi|369844250|gb|AEX25078.1| DEAD-box ATP dependent DNA helicase [Vibrio sp. EJY3]
Length = 447
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 120/453 (26%), Positives = 199/453 (43%), Gaps = 82/453 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIV-QT 93
LD RL L++ F + Q+ I + +DL +S TGSGKTL++ LP++ ++
Sbjct: 12 LDNRLLKNLKHYD----FKKATEIQQQAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHKS 67
Query: 94 LSNRAVRCL--RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
L ++ RA+++ PTR+LA QV ++ + L +G + D++ L +
Sbjct: 68 LKTKSFSAKDPRAVILAPTRELAKQVYGELRSMLAGLSYEAALILGGENFNDQVKALRRY 127
Query: 152 PKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 211
PK +VATPGRL DH+ R LE L L++DE DR+L
Sbjct: 128 PKF---------------------IVATPGRLADHLEH-RSLYLEGLETLILDEADRMLD 165
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
F P L+ I R R ++
Sbjct: 166 LG-------------------------FAPE----LRRIHNAAKHR--------RRQTLM 188
Query: 272 LSATLTQ-DPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL 330
SATL + N +A L+ P ++ G + + + + + L K L +L
Sbjct: 189 FSATLDHAEVNSIASEMLNAPKRISIGVSNEEHKDITQKFYLCDHLDHKEAILERVLAEA 248
Query: 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 390
+ I+FT++ + T RL LN E ++K SG Q+ R+ + F ++LV
Sbjct: 249 EYRQVIIFTATRDDTERLTAKLN---EKKLKAVALSGNLNQTQRNTIMSQFERAVFKILV 305
Query: 391 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK---DEVKRF 447
++D +RG+D+ V +V+N+D P + + Y+HR GRT RAG G +L+ D KR
Sbjct: 306 TTDVASRGLDIATVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLVGPKDWDSFKRV 365
Query: 448 KKLLQKADNDSCPIHSIPSSLIESLRPVYKSVR 480
+ LQ+ + S+ E L+ +K ++
Sbjct: 366 EAYLQQ---------DLSFSVFEDLKGKFKGLK 389
>gi|87310130|ref|ZP_01092262.1| ATP-dependent RNA helicase [Blastopirellula marina DSM 3645]
gi|87287120|gb|EAQ79022.1| ATP-dependent RNA helicase [Blastopirellula marina DSM 3645]
Length = 428
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 116/424 (27%), Positives = 191/424 (45%), Gaps = 69/424 (16%)
Query: 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQT 93
L +K AL+ P+Q A+ I L RD+ + TG+GKT ++ +PI++
Sbjct: 10 ALSVEMKAALEAARYIQPSPIQAAI----IPLALEGRDVLGQARTGTGKTAAFGIPIIER 65
Query: 94 LSNRA-VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
L + R +AL++ PTR+LA+QV+D A + ++V G + +
Sbjct: 66 LEHGPNSRNPQALILTPTRELAVQVRDEIAKLTHGQRINVVAVYGGKPLRSQ-------- 117
Query: 153 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE 212
+++L+ A I+V TPGR++D + R LE L +V+DE DR+L
Sbjct: 118 -------------MEKLKRAPHIVVGTPGRVID-LMTRRALQLEMLRTVVLDEADRMLDI 163
Query: 213 AYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVL 272
+ R D E K +RRC ER ++L
Sbjct: 164 GF-----------RPDIE-----------------KILRRCPEERQ----------TLLL 185
Query: 273 SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGE 332
SAT+ KLAQ + +P + T E +E + K LV LL+
Sbjct: 186 SATVPPTIEKLAQRYMRNPEKVDFSPTNISA-ETIEQRYFTVDHSKKFDMLVELLKREQP 244
Query: 333 EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS 392
+K IVF + T R+ L+ +L + G +Q R++ L F+ K +VLV++
Sbjct: 245 QKAIVFCRTKRGTERITQRLSKKTKL---VHCIHGDMQQGARNRALSDFKASKFRVLVAT 301
Query: 393 DAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 452
D + RG+D+ V++++NYD P + Y+HR GRT R G+ G +T + +E ++
Sbjct: 302 DVVGRGIDISDVSHIINYDIPEFSDDYVHRVGRTGRMGKEGIAYTFVTPEEGNELTRIEV 361
Query: 453 KADN 456
+ D
Sbjct: 362 RIDK 365
>gi|389720718|ref|ZP_10187537.1| ATP-dependent RNA helicase RhlB [Acinetobacter sp. HA]
gi|388609402|gb|EIM38574.1| ATP-dependent RNA helicase RhlB [Acinetobacter sp. HA]
Length = 383
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 117/415 (28%), Positives = 185/415 (44%), Gaps = 71/415 (17%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P LK A+ +G SS+ P+Q V + T+ D + TG+GKT ++ + I+ L
Sbjct: 10 LHPNLKQAIDALGFSSMTPIQEKVLKFTLAG----HDAIGRAQTGTGKTAAFLVSIINDL 65
Query: 95 SNRAVRCLR------ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
N V+ R AL++ PTR+LALQ++ + LSV +G + ++L
Sbjct: 66 LNNPVQEQRYRGEPRALILAPTRELALQIESDAHELNKFTDLSVVTLLGGVDFDKQKAQL 125
Query: 149 IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208
K P VDI+VATPGRL+D + + L+ + +LV+DE DR
Sbjct: 126 DKAP--------------------VDIMVATPGRLIDFVEQKEVW-LDQIEFLVIDEADR 164
Query: 209 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLV 268
LL ++P+V ++ R F K R+
Sbjct: 165 LLD---MGFIPSVKRIVR-----------------FSPRKEQRQT--------------- 189
Query: 269 KMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ 328
++ SAT + D LAQ L P+ + E K +E + K L +L+
Sbjct: 190 -LMFSATFSYDVLNLAQQWLFEPVTVEI-EPEKKTNADVEQRVYMVAKADKYKLLQDILR 247
Query: 329 SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 388
EK ++F + + +L +H K+ SG Q R K L F+ GK +
Sbjct: 248 DEPIEKVMIFANRRDQVRKLY---DHLKRDNYKVVMLSGEIAQDKRLKMLDQFKNGKHNI 304
Query: 389 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443
++++D RG+ V+GV++VVN+ P Y+HR GRT RAG G + L +D+
Sbjct: 305 MIATDVAGRGIHVDGVSHVVNFTLPEQSDDYVHRIGRTGRAGTRGVSISFLSEDD 359
>gi|327353326|gb|EGE82183.1| ATP-dependent RNA helicase DBP10 [Ajellomyces dermatitidis ATCC
18188]
Length = 945
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 113/419 (26%), Positives = 188/419 (44%), Gaps = 48/419 (11%)
Query: 42 ALQNMGISSL---------FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQ 92
Q+MG+++ F V + ++TI L ++D+ + TGSGKT ++ +P+++
Sbjct: 87 GFQSMGLNATLLKAITRKGFSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVIPMIE 146
Query: 93 TLSNRAVR-CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
L N + + RAL++ P+R+LALQ V + L L VG S+ ++ +
Sbjct: 147 KLKNHSAKFGSRALILSPSRELALQTLKVVKELGRGTDLKSVLLVGGDSLEEQFEYMAGN 206
Query: 152 PKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 211
P DI++ATPGR + H+ L + Y+V DE DRL
Sbjct: 207 P---------------------DIIIATPGRFL-HLKVEMSLDLSSIRYVVFDEADRLFE 244
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVER------GFKDKPYP 265
+ A L +L S + A+ LP SL R G++ + K P
Sbjct: 245 MGFAAQLTEILHGLPSSRQTLLFSAT--LPK---SLVEFARAGLQEPTLIRLDAESKISP 299
Query: 266 RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVA 325
L + ++ L L LH + + TGET + E+ K + K +
Sbjct: 300 DLQNAFFTVKSSEKEGALLHL-LHEVIKIPTGETEAHKRAKEEA-KNPKKRKRSEFASNS 357
Query: 326 LLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 385
+S E I+FT++ L ++L G + G Q+ R ++ FR G
Sbjct: 358 HKESPTEHSTIIFTATKHHVDYLVSILRISG---FAVSYAYGSLDQTARKIEVQNFRSGI 414
Query: 386 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444
+LV +D RG+D+ + NV+NYD P+ K ++HR GRTARAG+ G ++L+ + +
Sbjct: 415 THILVVTDVAARGIDIPILFNVINYDFPSQAKIFVHRVGRTARAGKTGWSYSLIRESDA 473
>gi|449668048|ref|XP_004206700.1| PREDICTED: probable ATP-dependent RNA helicase ddx31-like [Hydra
magnipapillata]
Length = 912
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 132/484 (27%), Positives = 208/484 (42%), Gaps = 97/484 (20%)
Query: 10 PVLPWMRSPVDVS-----LFEDCPLDHLPCLDPRLKVALQN-MGISSLFPVQVAVWQETI 63
P +P + S +VS +F + LP D RL+ L++ SL +Q+ +I
Sbjct: 74 PDIPQVISNNNVSNVEEVVFSSENVSDLPISD-RLRNNLRDQFKFKSLTQIQMI----SI 128
Query: 64 GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR-----ALVVLPTRDLALQVK 118
P L +D I SPTGSGKT YA+PI+ + R AL+++PTR+LALQ
Sbjct: 129 PPLLNGKDAMIKSPTGSGKTFCYAIPIIDKIIKMKPSIGRQDGPFALIIVPTRELALQTF 188
Query: 119 DVFAAIAPA-VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177
++ + + + + G+ +G E + +L GI +I+V
Sbjct: 189 NIVQDLCKSCISIVPGMLIGGEKCKSE------KARLRKGI---------------NIIV 227
Query: 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 237
ATPGR H+ T + + YLV+DE D+LL ++ + +L F D
Sbjct: 228 ATPGRFQYHLKETSCLNVSKIKYLVLDEADKLLSMGFEKTIKEILG---------FLDQH 278
Query: 238 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 297
+ +++R V +LSATL++D LA L L + +F+ +
Sbjct: 279 S----------SLKRQSV---------------LLSATLSKDIENLASLSLSNHVFVDSS 313
Query: 298 ET---------RYKLPERLESYKLICESKLKPLYLVALL---QSLGEEKCIVFTSSVEST 345
+ Y +P L Y + +KL+ + + + + ++K IVF S+ S
Sbjct: 314 KKDDFDPKAIHEYVVPSSLTQYFVTVPAKLRLVTIFCFICDNAFVEKKKIIVFVSNKNSV 373
Query: 346 H--------RLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTR 397
H L + H L + G Q R K F+E VL +D R
Sbjct: 374 HFHYEALKLFLAEVDTHSEMLFKNVYMLHGDMTQEQRFKNFDLFKESSFGVLFCTDVGAR 433
Query: 398 GMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADND 457
G+D++ V+ +V Y P + Y+HR GRTAR G+ G+ L EV K L ND
Sbjct: 434 GLDIKKVDWIVQYSCPTQFEDYLHRVGRTARIGEKGKSLLFLLPSEVGYVKFL-----ND 488
Query: 458 SCPI 461
S I
Sbjct: 489 SLVI 492
>gi|259416782|ref|ZP_05740702.1| ATP-dependent RNA helicase RhlE [Silicibacter sp. TrichCH4B]
gi|259348221|gb|EEW59998.1| ATP-dependent RNA helicase RhlE [Silicibacter sp. TrichCH4B]
Length = 490
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 121/415 (29%), Positives = 183/415 (44%), Gaps = 79/415 (19%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIV--Q 92
L+P++ A++ G S P+Q I L RD+ + TG+GKT S+ LP++
Sbjct: 9 LNPKVLKAIEEAGYESPTPIQAGA----IPAALEGRDVLGIAQTGTGKTASFTLPMITRL 64
Query: 93 TLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
R R+LV+ PTR+LA QV + F A V L+ L +G
Sbjct: 65 ARGRARARMPRSLVLCPTRELAAQVAENFDTYAKHVKLTKALLIG--------------- 109
Query: 153 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLR 211
G+ + +D + VD+L+ATPGRL+DH RG L + +VVDE DR+L
Sbjct: 110 ----GVSFKEQDAA--IDRGVDVLIATPGRLLDHFE--RGKLLLTGIEIMVVDEADRMLD 161
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
F+P +ER F P+ R +
Sbjct: 162 MG-------------------------FIPD------------IERIFSLTPFTRQT-LF 183
Query: 272 LSATLTQDPNKLAQLDLHHPLFL------TTGETRYKLPERLESYKLICESKLKPLYLVA 325
SAT+ + ++ L P + TT ET + ++ + E K L
Sbjct: 184 FSATMAPEIERITNTFLSGPERVEIARQATTSETIEQAVVMFKASRKDREGSEKRRVLRE 243
Query: 326 LLQSLGE--EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 383
L+ GE + I+F + + L +G I G QS R+KTL FR+
Sbjct: 244 LINQEGEAVKNAIIFCNRKTDVDIVAKSLKKYGYDAAPI---HGDLDQSQRTKTLDGFRD 300
Query: 384 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 438
G +++LV+SD RG+DV V++V N+D P + + Y+HR GRT RAG+ G+ TL
Sbjct: 301 GTLKILVASDVAARGLDVPSVSHVFNFDVPGHAEDYVHRIGRTGRAGRNGKAITL 355
>gi|375149900|ref|YP_005012341.1| DEAD/DEAH box helicase [Niastella koreensis GR20-10]
gi|361063946|gb|AEW02938.1| DEAD/DEAH box helicase domain protein [Niastella koreensis GR20-10]
Length = 405
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 114/429 (26%), Positives = 200/429 (46%), Gaps = 68/429 (15%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIV-QTLSNRAVRCLRALVVLPTRDLALQ 116
V ++ I P L RD+ ++ TG+GKT ++ LP++ + L++R + ALV++PTR+LA+Q
Sbjct: 27 VQEQVIPPILAGRDIIASAQTGTGKTAAFLLPVINRLLTHRIDGQVGALVIVPTRELAIQ 86
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDIL 176
+ ++ LS G + ++ ++E + LQ+ DI+
Sbjct: 87 IAQHLEGLSYFTNLSSIAVYGGNDGSNFVAEK------------------KALQTGTDIV 128
Query: 177 VATPGRLMDHINATRGFT-LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSD 235
V TPGR++ H+N G+ + L +LV+DE DR+L + SD+ N+
Sbjct: 129 VCTPGRMIAHLNM--GYVQFKQLQFLVLDEADRMLDMGF------------SDDLNKI-- 172
Query: 236 ASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLT 295
G+L T R+ ++ SAT+ +LA+ L +P +
Sbjct: 173 --------LGTLPTQRQT----------------LMFSATMPDKIRQLARKILTNPAEIN 208
Query: 296 TGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHF 355
+ K PE++ + K L +L ++ + ++F S +S L+
Sbjct: 209 IAIS--KPPEKIVQKAFVVYEPQKLPLLKHILTNVPFKSALIFCSRKQSVK---LLVRDM 263
Query: 356 GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAY 415
+ KI E QS R L F G+I +L ++D ++RG+D++ ++ V+NYD P
Sbjct: 264 ERAKFKIAEIHSDLEQSQRENVLNGFTSGRIPILCATDILSRGIDIDTIDLVINYDVPRD 323
Query: 416 IKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSL--IESLR 473
+ Y+HR GRTARA G FTL+ + E +F +++K +P L + +
Sbjct: 324 AEDYVHRIGRTARAEADGMAFTLVSEAEQNKF-AIIEKLIGKEVEKAVVPEELGSTPAYQ 382
Query: 474 PVYKSVRGG 482
P +S GG
Sbjct: 383 PRLRSKSGG 391
>gi|302927189|ref|XP_003054445.1| hypothetical protein NECHADRAFT_90274 [Nectria haematococca mpVI
77-13-4]
gi|256735386|gb|EEU48732.1| hypothetical protein NECHADRAFT_90274 [Nectria haematococca mpVI
77-13-4]
Length = 898
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 106/328 (32%), Positives = 154/328 (46%), Gaps = 78/328 (23%)
Query: 13 PWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFER-- 70
PW+ P+ VS P L L P+ L+ G F VQ A + P +R
Sbjct: 320 PWLAEPIRVSQDTRTPFADLGIL-PKAARVLEEKGFKDAFAVQTAAIP-LLLPTSKQRPG 377
Query: 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG- 129
D+ I++ TGSGKTL+YALP+V+ +S AV LRALVVLPTR+L Q ++ F A A
Sbjct: 378 DVLISAATGSGKTLAYALPVVRDISQGAVTRLRALVVLPTRELVKQAQEAFELCARAFEG 437
Query: 130 -----LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-------------- 170
+ VG+++G S+ E L+ R + YDP D ++LQ
Sbjct: 438 GDRKRVRVGISIGSQSLKHEQESLMDR-----EVRYDP-DTYKKLQEESEQRKQKAGISA 491
Query: 171 ------------------------SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDET 206
S VD+L+ TPGRL++H+ T GF+L+++ +LVVDE
Sbjct: 492 LDDLDDDEADPRLSSMDGYVVDFPSKVDVLICTPGRLVEHMEQTPGFSLDYVRWLVVDEA 551
Query: 207 DRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPR 266
D+LL +++Q WL + F S F + R F D +
Sbjct: 552 DKLLAQSFQGWLDLAM--------------DKFRVSKFSA----------RDFPDMDFSG 587
Query: 267 LVKMVLSATLTQDPNKLAQLDLHHPLFL 294
+ K++LSATLT+D + L QL L P +
Sbjct: 588 VRKVILSATLTRDLSLLNQLGLRRPRLI 615
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 59/100 (59%), Gaps = 9/100 (9%)
Query: 350 TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR--EGKIQVLVSSDAMTRGMDVEGVNNV 407
+L +H G L + +R KTL++F I++L++SD + RG+D+ +++V
Sbjct: 761 SLASHIGTLTSTTPTH-------IRRKTLRSFMTPSSPIRLLIASDLVARGIDLPNLDHV 813
Query: 408 VNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 447
+NYD P + Y+HR GRTARAG+ G +TL+ DE F
Sbjct: 814 INYDLPPSVAGYVHRVGRTARAGRSGCAWTLVGDDESGWF 853
>gi|315045858|ref|XP_003172304.1| ATP-dependent RNA helicase DBP10 [Arthroderma gypseum CBS 118893]
gi|311342690|gb|EFR01893.1| ATP-dependent RNA helicase DBP10 [Arthroderma gypseum CBS 118893]
Length = 940
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 119/416 (28%), Positives = 182/416 (43%), Gaps = 46/416 (11%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+P L A+ G S P+Q ++TI L ++D+ + TGSGKT ++ +P+++ L
Sbjct: 99 LNPNLLKAITRKGFSVPTPIQ----RKTIPLLLDDQDVVGMARTGSGKTAAFVIPMIEKL 154
Query: 95 SNRAVRC-LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPK 153
N + + R L++ P+R+LALQ V + L L VG S+ ++ + P
Sbjct: 155 KNHSTKVGARGLILSPSRELALQTLKVVKELGRGTDLKCVLLVGGDSLEEQFGYMAGNP- 213
Query: 154 LEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA 213
DI++ATPGR + H+ L + Y V DE DRL
Sbjct: 214 --------------------DIIIATPGRFL-HLKVEMSLDLSSIRYAVFDEADRLFEMG 252
Query: 214 YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVER------GFKDKPYPRL 267
+ A L +L S + A+ LP SL R G++ K P L
Sbjct: 253 FAAQLTEILHALPSSRQTLLFSAT--LPK---SLVEFARAGLQEPVLIRLDADSKISPDL 307
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRY-KLPERLESYKLICESKLKPLYLVAL 326
+ L + LH + + TGET KL ++ SK + +
Sbjct: 308 QSAFFTVKSADKEGALLHI-LHDLIKIPTGETEAGKLAKKETHEAKQGTSKKRKRSDMKG 366
Query: 327 LQSLG---EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 383
+ G E IVF ++ + LL H G + G Q+ R ++ FR
Sbjct: 367 QGAHGTPTEHSTIVFVATKHHVEYIANLLRHSG---FAVSYAYGSLNQTARKIQVQNFRA 423
Query: 384 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439
G +LV +D RG+D+ + NV+NYD P+ K YIHR GRTARAGQ G ++L+
Sbjct: 424 GISNILVVTDVAARGIDIPVLANVINYDFPSQPKIYIHRVGRTARAGQKGWSYSLV 479
>gi|291001779|ref|XP_002683456.1| dead box RNA helicase [Naegleria gruberi]
gi|284097085|gb|EFC50712.1| dead box RNA helicase [Naegleria gruberi]
Length = 907
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 121/427 (28%), Positives = 192/427 (44%), Gaps = 76/427 (17%)
Query: 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSP 77
P S F + P+ K AL+ G ++ +Q A +G RD+ +
Sbjct: 51 PSQFSKFLELPISQYS------KDALKKAGFVTMKDIQKASILHALGG----RDILGAAR 100
Query: 78 TGSGKTLSYALPIVQTLSNR---AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGL 134
TGSGKTL++ LP+++ L + + L AL++ P R+LA Q+ +V S GL
Sbjct: 101 TGSGKTLAFVLPVLELLYRKRWGKLDGLGALILSPNRELAQQIFEVLKLCGRYHHFSAGL 160
Query: 135 AVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194
VG + E E IC ++ILVATPGRL+ H++ T GF
Sbjct: 161 LVGGTKNLKEEKE---------HIC------------NMNILVATPGRLLQHMDETAGFI 199
Query: 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCG 254
+L LV+DE DRLL ++ L ++L LP + +L
Sbjct: 200 CSNLQVLVLDEADRLLELGFRNELNSILD---------------GLPKSRQTL------- 237
Query: 255 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH--HPLFLTTGETRYKLPERLESYKL 312
+ SAT T+D LA+L L + +++ E+ +P++L + +
Sbjct: 238 ----------------LFSATQTRDIKDLARLSLSKTNTEYISVHESE-PVPKQLTQHYI 280
Query: 313 ICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQS 372
C+ + K L + L+S +K IVF+S+V+ L T+ H L +K+ + +G Q
Sbjct: 281 ECQLEDKIDILFSFLKSHQNKKVIVFSSTVKQVSFLHTVFKHLP-LSVKMFKLAGRMSQG 339
Query: 373 VRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL 432
R + + F K VL ++D RG+D V+ V+ D P YIHR GRTAR
Sbjct: 340 SRREMFEGFTSAKAAVLFATDIAARGLDFPRVDFVLQLDAPVSKAFYIHRMGRTARNDAD 399
Query: 433 GRCFTLL 439
G+ ++
Sbjct: 400 GKSVVVV 406
>gi|282164729|ref|YP_003357114.1| putative ATP-dependent RNA helicase [Methanocella paludicola SANAE]
gi|282157043|dbj|BAI62131.1| putative ATP-dependent RNA helicase [Methanocella paludicola SANAE]
Length = 471
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 125/468 (26%), Positives = 209/468 (44%), Gaps = 83/468 (17%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101
AL MG P+Q ++ I L +D+ + TG+GKT ++ +P+++ + +
Sbjct: 16 ALAGMGFEEATPIQ----EQAIPAALAGKDVIGQAQTGTGKTAAFGIPMIENI-DAGSGD 70
Query: 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD 161
++ +V+ PTR+LA+QV + I G+ G I +I+ L +RP+
Sbjct: 71 IQGIVITPTRELAVQVAEELNRIGEFRGIHTLPIYGGQDIKRQINGLKRRPQ-------- 122
Query: 162 PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 221
I+V TPGRL+DH+ + +L+++ +V+DE D +L + + +
Sbjct: 123 -------------IIVGTPGRLVDHMMRRKTISLKNIRTVVLDEADEMLDMGFIEDIEEI 169
Query: 222 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 281
L+ T + A+ P IR+ ER KD P+ + + S ++T
Sbjct: 170 LKRTPEGRQTLLFSATIPAP--------IRKL-AERFMKD---PQTIG-IKSKSMT---- 212
Query: 282 KLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 341
T + Y++PE+ ++++C +L + L AL IVF
Sbjct: 213 -----------VSGTEQAYYEVPEK-HKFEVLC--RLLDVQLPAL--------AIVF--- 247
Query: 342 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 401
V + R+ L GE + G QS R ++ F+EG +VLV++D RG+D+
Sbjct: 248 VRTKRRVDELTKALGERGYPAEGIHGDLAQSKRDSVMRGFKEGTTEVLVATDVAARGLDI 307
Query: 402 EGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPI 461
GV +V N D P +Y+HR GRT RAG+ G T + E+ + ++K S
Sbjct: 308 SGVTHVYNLDIPQDPDSYVHRIGRTGRAGKKGTAITFVTPREMG-LLRFIEKITRHSIER 366
Query: 462 HSIPS----------SLIESLRPVYKSVRGGISDEAFWKVGCDLHGVN 499
IPS +L+ESL SV GG + V DL +N
Sbjct: 367 RPIPSAAEAFEGKQQALVESL----LSVAGGSDISKYRGVAQDLLDMN 410
>gi|221065934|ref|ZP_03542039.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
gi|220710957|gb|EED66325.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
Length = 430
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 120/415 (28%), Positives = 185/415 (44%), Gaps = 91/415 (21%)
Query: 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA------ 98
++G+ P+Q E I L RDL +PTGSGKT++Y LP++Q +
Sbjct: 18 DLGLRDATPIQT----EAIPAVLAGRDLWACAPTGSGKTMAYLLPLLQAWLAQKRGQTGF 73
Query: 99 VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPK---LE 155
VR L L+++PTR+LALQV + S++D +L ++P+ +
Sbjct: 74 VRPLATLILVPTRELALQVHE--------------------SLSDITRQLREQPRSRVVY 113
Query: 156 AGICYDPEDVLQELQSAVDILVATPGRLMDHI--NATRGFTLEHLCYLVVDETDRLLREA 213
G+ +P+ + +L+ + D LVATPGRL+D + NA R T++H LV+DE DRLL +
Sbjct: 114 GGVSINPQ--MMQLRGSADFLVATPGRLLDLVENNAVRLNTVQH---LVLDEADRLLDQG 168
Query: 214 YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273
+ L VL L LP+ +L + S
Sbjct: 169 FAEELNRVLAL---------------LPAKRQTL-----------------------LFS 190
Query: 274 ATLTQDPNKLAQLDLHHPLFLTT----GETRYKLPERLESYKLICESKLKPLYLVALLQS 329
AT Q+ LA LH P+ + PE + + +S + L L++
Sbjct: 191 ATFPQNVEALAARLLHDPVRVQVDADQAAEHSASPENISQRAIAVDSNRRTQLLRQLVKQ 250
Query: 330 LGE-----EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 384
GE E+ +VF + + L L G I + G Q R + L F+
Sbjct: 251 -GENQPEWERALVFVAKRHTAEMLADKLYKAG---IYATTFHGDMSQGARKEVLDQFKAK 306
Query: 385 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439
+ Q+L+++D RG+D+ + V+NYD P YIHR GRT RAG G T +
Sbjct: 307 RWQLLITTDLAARGIDIAQLPTVINYDLPRSPADYIHRIGRTGRAGHAGCAITFV 361
>gi|398353630|ref|YP_006399094.1| ATP-dependent RNA helicase RhlE [Sinorhizobium fredii USDA 257]
gi|390128956|gb|AFL52337.1| ATP-dependent RNA helicase RhlE [Sinorhizobium fredii USDA 257]
Length = 501
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 123/430 (28%), Positives = 191/430 (44%), Gaps = 100/430 (23%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-NRA-V 99
A+ + G ++ P+QV I P L RD+ + TG+GKT S+ LP++ L RA
Sbjct: 16 AVTDAGYTTPTPIQVGA----IPPALQRRDILGIAQTGTGKTASFVLPMLTLLEKGRARA 71
Query: 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 159
R R L++ PTR+LA QV + F L++ L +G G+
Sbjct: 72 RMPRTLILEPTRELAAQVTENFDKYGKNHKLNIALLIG-------------------GVS 112
Query: 160 YDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWL 218
+D +D ++L+ D+L+ TPGRL+DH RG + + LV+DE DR+L
Sbjct: 113 FDEQD--RKLERGADVLICTPGRLLDHFE--RGKLLMSGVEILVIDEADRMLDMG----- 163
Query: 219 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ 278
F+P +ER K P+ R + SAT+
Sbjct: 164 --------------------FIPD------------IERIAKLIPFTRQT-LFFSATMPP 190
Query: 279 DPNKLAQLDLHHPLFLTTGETRYKLPERLE-----SYKLICESKL---------KPLYLV 324
+ KLA L +P ER+E S + + K L
Sbjct: 191 EIQKLADRFLQNP-------------ERVEVARPASAAITVTQRFVAAHGKDYEKRAVLR 237
Query: 325 ALLQSLGEEK-CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 383
L+++ GE K I+F + + L L+ G + G Q R L +F++
Sbjct: 238 DLIRAQGELKNAIIFCNRKKDVAELFRSLDRHG---FSVGALHGDMDQRSRMAMLASFKD 294
Query: 384 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443
G IQ+LV+SD RG+D+ V++V N+D P + + Y+HR GRT RAG+ G FT++ K +
Sbjct: 295 GNIQLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGASFTIVTKRD 354
Query: 444 VKRFKKLLQK 453
K F ++K
Sbjct: 355 TK-FSDAIEK 363
>gi|169773163|ref|XP_001821050.1| ATP-dependent RNA helicase dbp4 [Aspergillus oryzae RIB40]
gi|238491114|ref|XP_002376794.1| DEAD box RNA helicase (Hca4), putative [Aspergillus flavus
NRRL3357]
gi|91206545|sp|Q2UHB7.1|DBP4_ASPOR RecName: Full=ATP-dependent RNA helicase dbp4
gi|83768911|dbj|BAE59048.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220697207|gb|EED53548.1| DEAD box RNA helicase (Hca4), putative [Aspergillus flavus
NRRL3357]
Length = 796
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 120/421 (28%), Positives = 182/421 (43%), Gaps = 70/421 (16%)
Query: 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR---CLRAL 105
SS F + IG L RD+ + TGSGKTL++ +P+++ L + L AL
Sbjct: 62 SSHFKTLTDIQSRAIGHALKGRDILGAAKTGSGKTLAFLIPVLENLYRKQWSEHDGLGAL 121
Query: 106 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 165
++ PTR+LA+Q+ +V I S GL +G S+ +E
Sbjct: 122 ILSPTRELAIQIFEVLRKIGRYHTFSAGLIIGGKSLKEE--------------------- 160
Query: 166 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 225
QE ++ILV TPGR++ H++ T F + +L LV+DE DR+L +Q + ++
Sbjct: 161 -QERLGRMNILVCTPGRMLQHLDQTAMFDVFNLQMLVLDEADRILDMGFQKTVDAIV--- 216
Query: 226 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 285
G L R+ ++ SAT T+ + LA+
Sbjct: 217 -------------------GHLPKERQT----------------LLFSATQTKKVSDLAR 241
Query: 286 LDLHHPLFLTTGET-RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 344
L L P ++ ET P L+ + ++ K L + ++S + K IVF SS +
Sbjct: 242 LSLQDPEYVAVHETASSATPSTLQQHYVVTPLSQKLDVLWSFIRSNLKAKTIVFLSSGKQ 301
Query: 345 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 404
+ H + I + G Q+Q R F + K VL S+D RG+D V
Sbjct: 302 VRFVYESFRHL-QPGIPLMHLHGRQKQGGRLDITAKFSQAKHAVLFSTDITARGLDFPAV 360
Query: 405 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH-KDEVKRFKKLLQKADNDSCPIHS 463
+ V+ D P TYIHR GRTAR + GR L +E K+L QK PI
Sbjct: 361 DWVIQMDCPEDADTYIHRVGRTARYERDGRAVLFLDPSEESGMLKRLEQK----KVPIER 416
Query: 464 I 464
I
Sbjct: 417 I 417
>gi|391865882|gb|EIT75161.1| RNA Helicase [Aspergillus oryzae 3.042]
Length = 796
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 120/421 (28%), Positives = 182/421 (43%), Gaps = 70/421 (16%)
Query: 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR---CLRAL 105
SS F + IG L RD+ + TGSGKTL++ +P+++ L + L AL
Sbjct: 62 SSHFKTLTDIQSRAIGHALKGRDILGAAKTGSGKTLAFLIPVLENLYRKQWSEHDGLGAL 121
Query: 106 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 165
++ PTR+LA+Q+ +V I S GL +G S+ +E
Sbjct: 122 ILSPTRELAIQIFEVLRKIGRYHTFSAGLIIGGKSLKEE--------------------- 160
Query: 166 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 225
QE ++ILV TPGR++ H++ T F + +L LV+DE DR+L +Q + ++
Sbjct: 161 -QERLGRMNILVCTPGRMLQHLDQTAMFDVFNLQMLVLDEADRILDMGFQKTVDAIV--- 216
Query: 226 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 285
G L R+ ++ SAT T+ + LA+
Sbjct: 217 -------------------GHLPKERQT----------------LLFSATQTKKVSDLAR 241
Query: 286 LDLHHPLFLTTGET-RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 344
L L P ++ ET P L+ + ++ K L + ++S + K IVF SS +
Sbjct: 242 LSLQDPEYVAVHETASSATPSTLQQHYVVTPLSQKLDVLWSFIRSNLKAKTIVFLSSGKQ 301
Query: 345 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 404
+ H + I + G Q+Q R F + K VL S+D RG+D V
Sbjct: 302 VRFVYESFRHL-QPGIPLMHLHGRQKQGGRLDITAKFSQAKHAVLFSTDITARGLDFPAV 360
Query: 405 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH-KDEVKRFKKLLQKADNDSCPIHS 463
+ V+ D P TYIHR GRTAR + GR L +E K+L QK PI
Sbjct: 361 DWVIQMDCPEDADTYIHRVGRTARYERDGRAVLFLDPSEESGMLKRLEQK----KVPIER 416
Query: 464 I 464
I
Sbjct: 417 I 417
>gi|378952637|ref|YP_005210125.1| protein RhlB [Pseudomonas fluorescens F113]
gi|359762651|gb|AEV64730.1| RhlB [Pseudomonas fluorescens F113]
Length = 485
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 137/479 (28%), Positives = 206/479 (43%), Gaps = 85/479 (17%)
Query: 10 PVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFE 69
PV+ W V+ E H L P L A+Q++G P+Q V +G L
Sbjct: 78 PVVAWKLEDFVVAPQEGKTRFHDFKLAPELMHAIQDLGFPYCTPIQAQV----LGFTLAG 133
Query: 70 RDLCINSPTGSGKTLSYALPIVQTL------SNRAVRCLRALVVLPTRDLALQVKDVFAA 123
+D + TG+GKT ++ + I+ L R + RAL++ PTR+L +Q+ A
Sbjct: 134 KDAIGRAQTGTGKTAAFLISIITQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAD 193
Query: 124 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL 183
+ GL+V VG ++ LEA C DILVATPGRL
Sbjct: 194 LTKYTGLNVMTFVGGMDFDKQLKH------LEARHC--------------DILVATPGRL 233
Query: 184 MDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSA 243
+D N L+ + +V+DE DR+L + +P V Q+ R
Sbjct: 234 LD-FNQRGDVHLDMVEVMVLDEADRMLDMGF---IPQVRQIIR----------------- 272
Query: 244 FGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKL 303
+ P ++ SAT T+D LA+ P + E
Sbjct: 273 ----------------QTPPKSERQTLLFSATFTEDVMNLAKQWTTDPSIVEI-EAENVA 315
Query: 304 PERLES--YKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIK 361
E +E Y + K K LY L+ G E+ +VF + + R+ L G +
Sbjct: 316 SENVEQHIYAVAGADKYKLLY--NLVNDNGWERVMVFANRKDEVRRIEERLVRDG---VN 370
Query: 362 IKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIH 421
+ SG Q R KTL+ FREGKI+VLV++D RG+ ++G+++V+N+ P Y+H
Sbjct: 371 AAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVH 430
Query: 422 RAGRTARAGQLGRCFTLLHKD---EVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYK 477
R GRT RAG G + +D ++ + LL K N P P+ L LRPV +
Sbjct: 431 RIGRTGRAGAAGVSISFAGEDDSYQLPSIEALLGKKINCETP----PTHL---LRPVER 482
>gi|356522085|ref|XP_003529680.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 21-like [Glycine
max]
Length = 701
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 118/427 (27%), Positives = 197/427 (46%), Gaps = 58/427 (13%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS------ 95
A++ G + P+Q+A I GL +RD+ + TGSGKT ++ LP++ ++
Sbjct: 295 AVEKAGYKTPSPIQMAA----IPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPIS 350
Query: 96 -NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
+ A+V+ PTR+LA Q++D A +G+ V VG SI
Sbjct: 351 EDNEAEGPYAVVMAPTRELAQQIEDETVKFAQYLGIKVVSIVGGQSIE------------ 398
Query: 155 EAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY 214
E G +++ +I++ATPGRL+D + R L Y+V+DE DR++ +
Sbjct: 399 EQGF---------KIRQGCEIVIATPGRLIDCLE-RRYAVLNQCNYVVLDEADRMIDMGF 448
Query: 215 QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274
+ + VL DA +PS+ ++ + +K R M SA
Sbjct: 449 EPQVMGVL------------DA---MPSS-----NLKPENEDEELDEKKIYRTTYM-FSA 487
Query: 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEK 334
T+ +LA+ L +P+ +T G T K + + + ++ + K L LL L ++
Sbjct: 488 TMPPAVERLARKYLRNPVVVTIG-TAGKATDLISQHVIMMKEAEKFYKLQRLLDELNDKT 546
Query: 335 CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394
IVF ++ + + L+ G ++ G + Q R +L+ FR + VLV++D
Sbjct: 547 AIVFVNTKRNADHVAKSLDKEG---YRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDV 603
Query: 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 454
RG+D+ V +V+NYD P I+ Y HR GRT RAG+ G T L + F L Q
Sbjct: 604 AGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLQDSDVFYDLKQML 663
Query: 455 DNDSCPI 461
+ P+
Sbjct: 664 IQSNSPV 670
>gi|339503994|ref|YP_004691414.1| ATP-dependent RNA helicase RhlE [Roseobacter litoralis Och 149]
gi|338757987|gb|AEI94451.1| putative ATP-dependent RNA helicase RhlE [Roseobacter litoralis Och
149]
Length = 484
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 124/434 (28%), Positives = 199/434 (45%), Gaps = 84/434 (19%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+P++ A+ G + P+Q I P L RD+ + TG+GKT S+ LP++ L
Sbjct: 9 LNPKVLKAIDEAGYETPTPIQAGA----IPPALAGRDVLGIAQTGTGKTASFTLPMITLL 64
Query: 95 S-NRA-VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
+ RA R R+LV+ PTR+LA QV + F + L+ L +G
Sbjct: 65 ARGRARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIG--------------- 109
Query: 153 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLR 211
G+ + +D L + VD+L+ATPGRL+DH RG L + +VVDE DR+L
Sbjct: 110 ----GVSFKEQDKL--IDKGVDVLIATPGRLLDHFE--RGKLLLTGVQIMVVDEADRMLD 161
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
F+P +ER F P+ R +
Sbjct: 162 MG-------------------------FIPD------------IERIFSLTPFTRQT-LF 183
Query: 272 LSATLTQDPNKLAQLDLHHPLFL------TTGETRYKLPERLESYKLICESKLKPLYLVA 325
SAT+ + ++ L P + T ET + + ++ + E K L A
Sbjct: 184 FSATMAPEIERITNTFLSAPERVEVARQATASETIEQGVLKFKASRKDREGTEKRKLLRA 243
Query: 326 LLQSLGEEKC---IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR 382
L+ + GE KC I+F + + L + I G QS R++TL FR
Sbjct: 244 LIDAEGE-KCTNAIIFCNRKTDVDIVAKSLKKYNYDAAPI---HGDLDQSQRTRTLDGFR 299
Query: 383 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL-LHK 441
+G ++ L++SD RG+DV V++V N+D P + + Y+HR GRT RAG+ G+ + + +
Sbjct: 300 DGSLKFLIASDVAARGLDVPAVSHVFNFDVPGHAEDYVHRIGRTGRAGRDGKAIMICVPR 359
Query: 442 DE--VKRFKKLLQK 453
DE ++ ++L+Q+
Sbjct: 360 DERNLEDIERLVQR 373
>gi|406595506|ref|YP_006746636.1| ATP-dependent RNA helicase [Alteromonas macleodii ATCC 27126]
gi|407682465|ref|YP_006797639.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'English
Channel 673']
gi|406372827|gb|AFS36082.1| ATP-dependent RNA helicase [Alteromonas macleodii ATCC 27126]
gi|407244076|gb|AFT73262.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'English
Channel 673']
Length = 596
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 130/453 (28%), Positives = 218/453 (48%), Gaps = 78/453 (17%)
Query: 15 MRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFE-RDLC 73
M + VD++ F+D +LP +P L+ AL+ +G P+Q E+I P L E DL
Sbjct: 1 MTTTVDMT-FKDL---NLP--EPILQ-ALEKVGYEKPSPIQA----ESI-PLLLEGHDLL 48
Query: 74 INSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVG 133
+ TG+GKT ++ALP++ + R + LV+ PTR+LA+QV + F A
Sbjct: 49 GQAQTGTGKTAAFALPMLANIDPEE-RKPQLLVLAPTRELAIQVAEAFQVYA-------- 99
Query: 134 LAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193
S+ IK + G YD + +++L+ V ++V TPGR++DHI +
Sbjct: 100 ----------SFSQKIKVLPVYGGQSYD--NQIRQLKRGVQVVVGTPGRIIDHIK-RKTL 146
Query: 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRC 253
L L +LV+DE D +LR + + +L + + E + + S +P G +K I
Sbjct: 147 DLSELKFLVLDEADEMLRMGFIDDVELIL--SHAPEERQTALFSATMP---GPIKKI--- 198
Query: 254 GVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLI 313
+R KD + ++ V +A+ + + Q+ HH +LE+ I
Sbjct: 199 -TQRYLKDPKHVKIASKVSTASTIR--QRYCQIAPHH---------------KLEALTRI 240
Query: 314 CESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSV 373
E V + + I+F + +T L L+ G ++ +G Q+
Sbjct: 241 ME--------VEVFDGM-----IIFVRTKTATVELADKLSARG---YDVEPLNGDIPQAA 284
Query: 374 RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 433
R +T++ ++GKI +LV++D + RG+DVE V++V+NYD P ++Y+HR GRT RAG+ G
Sbjct: 285 RERTVEKLKQGKIDILVATDVVARGLDVERVSHVINYDIPYDSESYVHRIGRTGRAGRQG 344
Query: 434 RCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPS 466
+ E KR ++K IPS
Sbjct: 345 DAILFISHRE-KRLLFSIEKTTKQPIEAMPIPS 376
>gi|294657726|ref|XP_460025.2| DEHA2E16632p [Debaryomyces hansenii CBS767]
gi|218511815|sp|Q6BP45.2|ROK1_DEBHA RecName: Full=ATP-dependent RNA helicase ROK1
gi|199432904|emb|CAG88281.2| DEHA2E16632p [Debaryomyces hansenii CBS767]
Length = 550
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 125/452 (27%), Positives = 204/452 (45%), Gaps = 82/452 (18%)
Query: 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSP 77
P+ + FED + LD +L L + G + P+Q E I L RDL +P
Sbjct: 106 PLPIGSFEDLIGRY--KLDKKLLSNLIDAGFTEPTPIQ----DEAIPISLEGRDLIACAP 159
Query: 78 TGSGKTLSYALPIVQTL--SNRAVRC--LRALVVLPTRDLALQVKDVFAAIAPAVGLSVG 133
TGSGKTL++ +P+VQT+ SN V+ +R L++ PT +LA+Q+ + + +G
Sbjct: 160 TGSGKTLAFLIPLVQTILQSNPNVKNYGIRGLIISPTNELAVQIFQELNTMTKGKKMKIG 219
Query: 134 LAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193
+ Q +A++I+ I S DILV+TP RL+D I
Sbjct: 220 ILSKQ--LANKINNKIIN------------------SSKYDILVSTPLRLIDSI-KNETI 258
Query: 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRC 253
+L + LV+DETD+L + + +L ++ + R S S +PS
Sbjct: 259 SLSKVEQLVIDETDKLFDQGFVEQTDEILS-NCTNTKLRKSMFSATIPS----------- 306
Query: 254 GVERGFKDKPYPRLVKMVLSATLTQDP------NKLAQLDLHHPLFLTTGETRYKLPERL 307
GVE ++ ++ +DP +K A + + TG KL L
Sbjct: 307 GVEE--------------MAQSIMKDPIRVIIGHKEAASNTIEQKLVFTGNEEGKL---L 349
Query: 308 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 367
++I + + KP ++ LQS+ K + H L + L + +
Sbjct: 350 AIRQMIQQGEFKPPIII-FLQSITRAKALF--------HELL-----YDRLNVDVIHAER 395
Query: 368 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 427
+Q R + +K F+ G I VL+++D + RG+D +GVN V+NYD P + Y+HR GRT
Sbjct: 396 TPKQ--RDEVIKRFKSGDIWVLITTDVIARGVDFKGVNLVINYDVPQSAQAYVHRIGRTG 453
Query: 428 RAGQLGRCFTLLHKDEVKRFKKLLQKADNDSC 459
R G+ G+ T K++ K K ++ C
Sbjct: 454 RGGKAGKAVTFFTKEDDKAVKPIINVMKQSGC 485
>gi|417473577|ref|ZP_12168940.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Rubislaw str. A4-653]
gi|353650489|gb|EHC92837.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Rubislaw str. A4-653]
Length = 467
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 126/434 (29%), Positives = 198/434 (45%), Gaps = 76/434 (17%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LNPDILRAIAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 -----SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
+ R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 IAHQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQIEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNEN-----RFSDASTFLPSAFGSLKTIRRCGVERGFKDK 262
R+L + + VL + +N FSD L K +R C R +K K
Sbjct: 160 RMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAE-----KLLRNCCATR-WKSK 213
Query: 263 PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLY 322
L +PL + R E++ + + K K
Sbjct: 214 WL-----------------------LRNPLEIEVAR-RNTASEQVTQHVHFVDKKRKREL 249
Query: 323 LVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR 382
L ++ ++ +VFT + + L LN G I+ G + Q R++ L F+
Sbjct: 250 LSQMIGQGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFK 306
Query: 383 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD 442
G I+VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ D
Sbjct: 307 SGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVD 366
Query: 443 E---VKRFKKLLQK 453
E ++ +KLL+K
Sbjct: 367 EHKLLRDIEKLLKK 380
>gi|407686365|ref|YP_006801538.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Balearic
Sea AD45']
gi|407289745|gb|AFT94057.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Balearic
Sea AD45']
Length = 596
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 130/453 (28%), Positives = 218/453 (48%), Gaps = 78/453 (17%)
Query: 15 MRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFE-RDLC 73
M + VD++ F+D +LP +P L+ AL+ +G P+Q E+I P L E DL
Sbjct: 1 MTTTVDMT-FKDL---NLP--EPILQ-ALEKVGYEKPSPIQA----ESI-PLLLEGHDLL 48
Query: 74 INSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVG 133
+ TG+GKT ++ALP++ + R + LV+ PTR+LA+QV + F A
Sbjct: 49 GQAQTGTGKTAAFALPMLANIDPEQ-RKPQLLVLAPTRELAIQVAEAFQVYA-------- 99
Query: 134 LAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193
S+ IK + G YD + +++L+ V ++V TPGR++DHI +
Sbjct: 100 ----------SFSQKIKVLPVYGGQSYD--NQIRQLKRGVQVVVGTPGRIIDHIK-RKTL 146
Query: 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRC 253
L L +LV+DE D +LR + + +L + + E + + S +P G +K I
Sbjct: 147 DLSELKFLVLDEADEMLRMGFIDDVELIL--SHAPEERQTALFSATMP---GPIKKI--- 198
Query: 254 GVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLI 313
+R KD + ++ V +A+ + + Q+ HH +LE+ I
Sbjct: 199 -TQRYLKDPKHVKIASKVSTASTIR--QRYCQIAPHH---------------KLEALTRI 240
Query: 314 CESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSV 373
E V + + I+F + +T L L+ G ++ +G Q+
Sbjct: 241 ME--------VEVFDGM-----IIFVRTKTATVELADKLSARG---YDVEPLNGDIPQAA 284
Query: 374 RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 433
R +T++ ++GKI +LV++D + RG+DVE V++V+NYD P ++Y+HR GRT RAG+ G
Sbjct: 285 RERTVEKLKQGKIDILVATDVVARGLDVERVSHVINYDIPYDSESYVHRIGRTGRAGRQG 344
Query: 434 RCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPS 466
+ E KR ++K IPS
Sbjct: 345 DAILFISHRE-KRLLFSIEKTTKQPIEAMPIPS 376
>gi|372281558|ref|ZP_09517594.1| ATP-dependent RNA helicase [Oceanicola sp. S124]
Length = 538
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 123/433 (28%), Positives = 197/433 (45%), Gaps = 82/433 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LDP++ A+ + G S P+Q I L +D+ + TG+GKT S+ LP++ L
Sbjct: 9 LDPKVLKAIADAGYESPTPIQAGA----IPHALAGKDVLGIAQTGTGKTASFTLPMITRL 64
Query: 95 S-NRA-VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
+ RA R R+LV+ PTR+LA QV + F + L+ L +G
Sbjct: 65 AKGRARARMPRSLVLCPTRELAAQVAENFDTYTKYMKLTKALLIG--------------- 109
Query: 153 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLR 211
G+ + ++ L + VD+L+ATPGRL+DH RG L + +VVDE DR+L
Sbjct: 110 ----GVSFKEQEAL--IDRGVDVLIATPGRLLDHFE--RGKLLLTGVQIMVVDEADRMLD 161
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
F+P +ER F P+ R +
Sbjct: 162 MG-------------------------FIPD------------IERIFSLTPFTRQT-LF 183
Query: 272 LSATLTQDPNKLAQLDLHHPLFL------TTGETRYKLPERLESYKLICESKLKPLYLVA 325
SAT+ + ++ L +P + TTGE + ++ + E K L
Sbjct: 184 FSATMAPEIERITNTFLSNPERIEVARQATTGENIQQQVVMYKASRKDREGSEKRRILRQ 243
Query: 326 LLQSLGEE--KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 383
++ G+ IVF + L +G I G QS R++TL FR+
Sbjct: 244 IIDMEGDSLTNAIVFCNRKTDVDVTAKSLKKYGYDAAPI---HGDLDQSQRTRTLDGFRD 300
Query: 384 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL-LHKD 442
G +++LV+SD RG+DV V++V N+D P++ + Y+HR GRT RAG+ G+ + + +D
Sbjct: 301 GSLKILVASDVAARGLDVPSVSHVFNFDVPSHSEDYVHRIGRTGRAGRKGKAVMICVPRD 360
Query: 443 E--VKRFKKLLQK 453
E + +KL++K
Sbjct: 361 EKNLADIEKLVEK 373
>gi|298293432|ref|YP_003695371.1| DEAD/DEAH box helicase [Starkeya novella DSM 506]
gi|296929943|gb|ADH90752.1| DEAD/DEAH box helicase domain protein [Starkeya novella DSM 506]
Length = 557
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 190/419 (45%), Gaps = 79/419 (18%)
Query: 32 LPCLDPRLKVALQNMGISSLFPVQV-AVWQETIGPGLFERDLCINSPTGSGKTLSYALPI 90
L +P LK AL S+ P+Q AV Q G RDL + TG+GKT ++ALPI
Sbjct: 12 LGLAEPILK-ALAEANHSTPTPIQAQAVPQVLAG-----RDLVGIAQTGTGKTAAFALPI 65
Query: 91 VQTLSNRAVR----CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEIS 146
+ L + +R RALV+ PTR+L+ Q+ + F V S LA+G I +
Sbjct: 66 LHHLVTKRLRPERRSARALVLSPTRELSGQILESFRLYGKHVRPSTALAIGGVPIGRQA- 124
Query: 147 ELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHI--NATRGFTLEHLCYLVVD 204
+ L VD+LVATPGRL+D + NA R L+ + V+D
Sbjct: 125 --------------------RSLAGGVDVLVATPGRLVDLLENNAVR---LDMVEVFVLD 161
Query: 205 ETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPY 264
E D++L + + +++ N F A+
Sbjct: 162 EADQMLDMGFIHAIRSIVARLPHKRRNLFFSAT--------------------------M 195
Query: 265 PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLV 324
PR ++ L+ TL DP ++A + K +++E + KP LV
Sbjct: 196 PREIEK-LADTLLSDPVRVAVTPV------------AKTADKIEQKVFFTDRAGKPNLLV 242
Query: 325 ALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 384
+L ++ +VF+ + R+ L G I + G + Q R + L AFR+G
Sbjct: 243 EVLGEPTLDRALVFSRTKHGADRVVKSLAGAG---INAEAIHGNKSQPQRERALAAFRQG 299
Query: 385 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443
++VLV++D RG+DV GV++V+NYD P ++Y+HR GRTARAG+ G + +E
Sbjct: 300 VVKVLVATDIAARGIDVPGVSHVINYDLPNVPESYVHRIGRTARAGREGIAISFCDGEE 358
>gi|451972716|ref|ZP_21925920.1| dead/deah box helicase domain protein [Vibrio alginolyticus E0666]
gi|451931409|gb|EMD79099.1| dead/deah box helicase domain protein [Vibrio alginolyticus E0666]
Length = 443
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 120/453 (26%), Positives = 199/453 (43%), Gaps = 82/453 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIV-QT 93
LD RL L++ F + ++ I + +DL +S TGSGKTL++ LP++ ++
Sbjct: 8 LDNRLLKNLKHYD----FKKPTDIQKQAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHKS 63
Query: 94 LSNRAVRCL--RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
L ++ RA+++ PTR+LA QV ++ + L +G + D++ L +
Sbjct: 64 LKTKSFSAKDPRAVILAPTRELAKQVYGELRSMLAGLSYEAALILGGENFNDQVKALRRY 123
Query: 152 PKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 211
PK +VATPGRL DH+ R LE L L++DE DR+L
Sbjct: 124 PKF---------------------IVATPGRLADHLE-HRSLYLEGLETLILDEADRMLD 161
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
F P L+ I + R R ++
Sbjct: 162 LG-------------------------FAPE----LRRIHKAAKHR--------RRQTLM 184
Query: 272 LSATLTQ-DPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL 330
SATL D N +A L+ P + G + + + + + L K L +L
Sbjct: 185 FSATLDHADVNDIAAEMLNAPKRIAIGVSNEEHKDITQKFYLCDHLDHKEAILDRVLSEA 244
Query: 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 390
+ I+FT++ + T RL LN E ++K SG Q+ R+ + F ++LV
Sbjct: 245 EYRQVIIFTATRDDTERLTAKLN---EKKLKAVALSGNLNQTQRNTIMSQFERAVFKILV 301
Query: 391 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK---DEVKRF 447
++D +RG+D+ V +V+N+D P + + Y+HR GRT RAG G +L+ D KR
Sbjct: 302 TTDVASRGLDIATVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLVGPKDWDSFKRV 361
Query: 448 KKLLQKADNDSCPIHSIPSSLIESLRPVYKSVR 480
+ LQ+ + S+ E L+ +K ++
Sbjct: 362 EAYLQQ---------DLEFSVFEDLKGKFKGLK 385
>gi|348672465|gb|EGZ12285.1| hypothetical protein PHYSODRAFT_361512 [Phytophthora sojae]
Length = 836
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 125/434 (28%), Positives = 200/434 (46%), Gaps = 68/434 (15%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQ--------T 93
A++++G P+Q+ + I GL +RD+ + TGSGKT ++ +PI+
Sbjct: 385 AIKDLGFERPSPIQM----QAIPIGLQKRDIIGIAETGSGKTAAFVIPIIAYIYSLPPAM 440
Query: 94 LSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPK 153
++ + ALV+ PTR+LALQ++ A+ L +VGQ I L
Sbjct: 441 VARTGEQGPLALVMAPTRELALQIE------QEAIKLCKYTSVGQPEKLGPIKTL----S 490
Query: 154 LEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA 213
+ G ED L+ VDI++ TPGRLMD + + L Y+V+DE DR++
Sbjct: 491 VVGGQSI--EDQGFRLREGVDIIIGTPGRLMDCLE-SHYLVLNQCNYVVLDEADRMIDMG 547
Query: 214 YQAWLPTVLQ----LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVK 269
++ + VL+ L +S+NE T G + G + + R+
Sbjct: 548 FEPQVVAVLENMGSLLKSENEEEMEQQLTLA------------NGAQPGEELQHRLRVTT 595
Query: 270 MVLSATLTQDPNKLAQLDLHHP--------------------LFLTTGETRYKLPERLES 309
M SAT+ + +LA+ L HP LF+ G+ R KL +E
Sbjct: 596 M-FSATMPVEVERLAKTFLRHPSIVKIGDEDSGKNKRIDQRVLFMNPGKKRSKL---VEV 651
Query: 310 YKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQ 369
+ I ++ PL + + K IVF + + + ++ G R I G +
Sbjct: 652 LRDILSAQSVPLPRSRKEKVVDGAKIIVFVNIKKECDSVAKFISSEG-FRCTI--LHGGK 708
Query: 370 RQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA 429
Q R ++LK FREG +LV++D RG+D+ V +VVN+D P+ I+ Y HR GRT RA
Sbjct: 709 TQDQREESLKMFREGYCDMLVATDVAGRGLDIPDVTHVVNFDLPSKIQNYTHRIGRTGRA 768
Query: 430 GQLGRCFTLLHKDE 443
G+ G + L D+
Sbjct: 769 GKDGVAISFLTDDD 782
>gi|254228728|ref|ZP_04922151.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
gi|262396550|ref|YP_003288403.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
gi|151938675|gb|EDN57510.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
gi|262340144|gb|ACY53938.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
Length = 443
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 120/453 (26%), Positives = 199/453 (43%), Gaps = 82/453 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIV-QT 93
LD RL L++ F + ++ I + +DL +S TGSGKTL++ LP++ ++
Sbjct: 8 LDNRLLKNLKHYD----FKKPTDIQKQAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHKS 63
Query: 94 LSNRAVRCL--RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
L ++ RA+++ PTR+LA QV ++ + L +G + D++ L +
Sbjct: 64 LKTKSFSAKDPRAVILAPTRELAKQVYGELRSMLAGLSYEAALILGGENFNDQVKALRRY 123
Query: 152 PKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 211
PK +VATPGRL DH+ R LE L L++DE DR+L
Sbjct: 124 PKF---------------------IVATPGRLADHLE-HRSLYLEGLETLILDEADRMLD 161
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
F P L+ I + R R ++
Sbjct: 162 LG-------------------------FAPE----LRRIHKAAKHR--------RRQTLM 184
Query: 272 LSATLTQ-DPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL 330
SATL D N +A L+ P + G + + + + + L K L +L
Sbjct: 185 FSATLDHADVNDIAAEMLNSPKRIAIGVSNEEHKDITQKFYLCDHLDHKEAILDRVLSEA 244
Query: 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 390
+ I+FT++ + T RL LN E ++K SG Q+ R+ + F ++LV
Sbjct: 245 EYRQVIIFTATRDDTERLTAKLN---EKKLKAVALSGNLNQTQRNTIMSQFERAVFKILV 301
Query: 391 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK---DEVKRF 447
++D +RG+D+ V +V+N+D P + + Y+HR GRT RAG G +L+ D KR
Sbjct: 302 TTDVASRGLDIATVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLVGPKDWDSFKRV 361
Query: 448 KKLLQKADNDSCPIHSIPSSLIESLRPVYKSVR 480
+ LQ+ + S+ E L+ +K ++
Sbjct: 362 EAYLQQ---------DLEFSVFEDLKGKFKGLK 385
>gi|427792247|gb|JAA61575.1| Putative atp-dependent rna helicase, partial [Rhipicephalus
pulchellus]
Length = 746
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 125/411 (30%), Positives = 181/411 (44%), Gaps = 79/411 (19%)
Query: 67 LFERDLCINSPTGSGKTLSYALPIV---QTLSNRAVRC--LRALVVLPTRDLALQVKDVF 121
L RD I S TGSGKTL+YALPI+ Q + + R +RA+V++PTR+LALQ + F
Sbjct: 220 LGRRDTLIKSHTGSGKTLAYALPILHCLQEIRPKLTRADGVRAVVIVPTRELALQTYEWF 279
Query: 122 AAIAPAVGLSV-GLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180
++ A V G+ +G E + L K + I++ TP
Sbjct: 280 EKLSKACTWVVPGVLMGGEKKKSEKARLRK---------------------GLAIVIGTP 318
Query: 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFL 240
GRL DH+ T F+L + +LVVDE DR+L ++ + ++ L + E R + ++ L
Sbjct: 319 GRLTDHLEHTESFSLANTSWLVVDEADRMLELGFEESVSKIVTLWK---EQRRVEGTSVL 375
Query: 241 PSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE-- 298
LSATLT+ KLA L L P+ +
Sbjct: 376 -------------------------------LSATLTKGVEKLAGLTLEDPMTVDVAVES 404
Query: 299 -----TRYKLPERLESYKLICESKLKPLYLVALL----QSLGEEKCIVFTS---SVESTH 346
+ LP L Y L KL + L LL + K IVF + SV+ H
Sbjct: 405 GANELEEFVLPPGLSQYYLQVPVKLSQMALCCLLLEACVAAERGKVIVFLATQDSVDFEH 464
Query: 347 RLCT----LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE 402
L + ++ + RI G Q R++ FRE VL ++D +RG+DV
Sbjct: 465 ALFSSVLGVMLEDTDKRIDFVRLHGEMTQHDRAEVFNRFREATSGVLFTTDVASRGIDVP 524
Query: 403 GVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQK 453
V+ +V P + Y+HRAGRTAR G G+ LL EV L Q+
Sbjct: 525 QVDLIVQCCVPLRPEEYVHRAGRTARIGAKGKVVLLLFPSEVGFLDVLAQR 575
>gi|268565311|ref|XP_002639404.1| Hypothetical protein CBG03992 [Caenorhabditis briggsae]
Length = 750
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 113/422 (26%), Positives = 190/422 (45%), Gaps = 80/422 (18%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN---RAVRCLRALVVLPTRDLA 114
+ ++TI L D+ + TGSGKTL+ +PI++ L L ALV+ PTR+LA
Sbjct: 102 IQRDTIAHSLTGADVVGAAKTGSGKTLALVIPILEALWRVKWSPEYGLGALVISPTRELA 161
Query: 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVD 174
LQ A+ G S GL +G S +A E + + S ++
Sbjct: 162 LQTFSTINAVGKHHGFSCGLVIGGSEVAFERNRI----------------------SGIN 199
Query: 175 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 234
I+V TPGRL+ H++ + L LV+DE DR+L + L +++
Sbjct: 200 IIVCTPGRLLQHMDENEQMNCDSLQILVLDEADRMLDMGFSKQLNSII------------ 247
Query: 235 DASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL 294
LP+ +L + SAT T++ L+++ + P+F+
Sbjct: 248 ---NNLPAERQTL-----------------------LFSATQTRNVKDLSRVCTNDPVFV 281
Query: 295 TTGE-TRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN 353
+ E + P+ L+ ++ E ++K L + +++ ++K +VF SS + L +
Sbjct: 282 SVHENSAAATPDNLKQSYVVVEEEIKINTLWSFIEAHKKKKSLVFVSSCKQARFLTEV-- 339
Query: 354 HFGELR--IKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD 411
F +LR + + G Q R +T + E K VL+++D +RG+D E ++ V+ D
Sbjct: 340 -FSQLRPGLPVMGLWGTMNQKKRIETFTKYDESKAAVLIATDVASRGLDFERIDWVIQVD 398
Query: 412 KPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIES 471
PA I YIHR GR+AR + G ++ + + L K HSIP IE
Sbjct: 399 CPAQIDDYIHRVGRSARMEESGNSLLMVTSSQEEAMISKLAK--------HSIP---IEE 447
Query: 472 LR 473
L+
Sbjct: 448 LK 449
>gi|313202811|ref|YP_004041468.1| dead/deah box helicase domain-containing protein [Paludibacter
propionicigenes WB4]
gi|312442127|gb|ADQ78483.1| DEAD/DEAH box helicase domain protein [Paludibacter propionicigenes
WB4]
Length = 451
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 122/447 (27%), Positives = 211/447 (47%), Gaps = 80/447 (17%)
Query: 29 LDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL 88
D L ++P L AL + G + P+Q + +I L DL + TG+GKT ++A+
Sbjct: 3 FDKLDLIEPILN-ALSHEGYTQPTPIQ----EISIPIVLKGHDLLGCAQTGTGKTAAFAI 57
Query: 89 PIVQTL-----SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIAD 143
PI+Q L + RA R ++AL+V PTR+LA+Q+ + FAA + L + G
Sbjct: 58 PILQLLQLNKGAERAPRKIKALIVTPTRELAIQIGESFAAYGRFMNLRHTVIFGGVPQGA 117
Query: 144 EISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT-LEHLCYLV 202
++ L+ VDIL+ATPGRL+D T+G+ L L V
Sbjct: 118 QVG---------------------ALKMGVDILIATPGRLLDL--QTQGYVKLNELSIFV 154
Query: 203 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDK 262
+DE DR+L + + ++++ + ++ F A+ +P ++IR
Sbjct: 155 LDEADRMLDMGFIHDVKKLIKIIPAKRQSLFFSAT--MP------ESIR----------- 195
Query: 263 PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLY 322
VL+ ++ +P ++A + TT ET ++ ++ K
Sbjct: 196 --------VLAGSILTNPEEVAVTPVS-----TTAET-------IQQEMYFVDAVNKKDL 235
Query: 323 LVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR 382
L+ LLQ + +VFT + ++ LL + RIK + G + Q+ R L+ F+
Sbjct: 236 LIHLLQDKSIKTALVFTRTKHGADKVQRLLT---KARIKAEAIHGNKSQNARQNALRNFK 292
Query: 383 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD 442
+ +VLV++D RG+D++ +N V+NY+ P +TY+HR GRT RAG G+ + +
Sbjct: 293 DRTTRVLVATDIAARGIDIDDLNLVINYEIPNIPETYVHRIGRTGRAGLDGKAVSFCDAE 352
Query: 443 EVKRFKKLLQKADNDSCPI---HSIPS 466
E + + +QK + P+ H P+
Sbjct: 353 E-HEYLRDIQKLISIQIPVIKDHPFPA 378
>gi|306840076|ref|ZP_07472862.1| DEAD-box ATP dependent DNA helicase [Brucella sp. NF 2653]
gi|306404804|gb|EFM61097.1| DEAD-box ATP dependent DNA helicase [Brucella sp. NF 2653]
Length = 482
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 117/420 (27%), Positives = 194/420 (46%), Gaps = 80/420 (19%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P++ A++ G ++ P+Q I P L +D+ + TG+GKT S+ LP++ L
Sbjct: 9 LSPKVIAAVEAAGYTAPTPIQAGA----IPPALERKDVLGIAQTGTGKTASFVLPMLTLL 64
Query: 95 S-NRA-VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
RA R R L++ PTR+LA QV++ F L+V L +G
Sbjct: 65 EKGRARARMPRTLILEPTRELAAQVEENFVKYGINHRLNVALLIG--------------- 109
Query: 153 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLR 211
G+ ++ ++ ++L+ D+L+ATPGR++DH RG L + LV+DE DR+L
Sbjct: 110 ----GVSFEEQE--RKLERGADVLIATPGRMLDHFE--RGKLLLTGVEILVIDEADRMLD 161
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
F+P +ER K P+ R +
Sbjct: 162 MG-------------------------FIPD------------IERICKLIPFTRQT-LF 183
Query: 272 LSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL---KPLYLVALLQ 328
SAT+ + KL + LH P+ + + + + +L+ K K L L+Q
Sbjct: 184 FSATMPPEITKLTEQFLHSPVRIEVAKASST--AKTVTQRLVKSGKKDWDKRAVLRDLIQ 241
Query: 329 SLGE--EKCIVFTSSVESTHRLC-TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 385
S G+ + I+F + + L +L H G Q R L +F++GK
Sbjct: 242 SEGDSLKNAIIFCNRKKDVSELFRSLTRH----EFDAGALHGDMDQRARMAMLSSFKDGK 297
Query: 386 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 445
+++LV+SD RG+D+ V++V N+D P + + Y+HR GRT RAG+ G+ FT++ + K
Sbjct: 298 LRLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTLSDTK 357
>gi|221065648|ref|ZP_03541753.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
gi|220710671|gb|EED66039.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
Length = 473
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 124/437 (28%), Positives = 201/437 (45%), Gaps = 85/437 (19%)
Query: 39 LKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL---- 94
L A+ +MG S+ P+Q + I L +D+ + TG+GKT +++LP++Q L
Sbjct: 14 LARAVADMGYESMTPIQA----QAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQRLMRHE 69
Query: 95 ---SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
++ A +RALV+LPTR+LA QV A A L + G
Sbjct: 70 NASASPARHPVRALVLLPTRELADQVAQQIALYAKHTKLRSTVVFG-------------- 115
Query: 152 PKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 211
G+ P+ + EL+ V++LVATPGRL+DHI A + L + Y+V+DE DR+L
Sbjct: 116 -----GMDMKPQTL--ELKKGVEVLVATPGRLLDHIEA-KNVVLNQVEYVVLDEADRMLD 167
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271
+ L +L ++LP + +L +
Sbjct: 168 IGFLPDLQRIL---------------SYLPKSRTTL-----------------------L 189
Query: 272 LSATLTQDPNKLAQLDLHHPLFLTTG---ETRYKLPERLESYKLICESKLKPLYLVALLQ 328
SAT + + +LA L P+ + ET + +R YK+ + K + ++L+
Sbjct: 190 FSATFSPEIKRLAGSYLQDPVTIEVARPNETASTVEQRF--YKVSDDDKR--YAIRSVLK 245
Query: 329 SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 388
+ +F++S RL L G ++ G + Q R K L+AF+ G++ +
Sbjct: 246 ERDIRQAFIFSNSKLGCARLTRALERDG---LRAGALHGDKSQDERLKALEAFKAGEVDL 302
Query: 389 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---VK 445
LV +D RG+D++ V V NYD P + Y+HR GRT RAG G TL+ + V
Sbjct: 303 LVCTDVAARGLDIKDVPAVFNYDVPFNAEDYVHRIGRTGRAGASGLAVTLVTDHDSRNVA 362
Query: 446 RFKKLLQKA-DNDSCPI 461
+KL++K D + P+
Sbjct: 363 DIEKLIKKKIDVEPAPM 379
>gi|336367848|gb|EGN96192.1| hypothetical protein SERLA73DRAFT_94250 [Serpula lacrymans var.
lacrymans S7.3]
Length = 528
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 132/439 (30%), Positives = 196/439 (44%), Gaps = 72/439 (16%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL--SNRAVRCLRALVVLPTRDLAL 115
V + T+ GL DL + + TG+GKT+++ LP ++ L N + LV+ PTR+LAL
Sbjct: 73 VQEATLKLGLSGIDLLVQAKTGTGKTVAFLLPAIERLEKQNLPQDKISILVISPTRELAL 132
Query: 116 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDI 175
Q++ + L V A+G ++I E S + + DI
Sbjct: 133 QIEKEARDLIAHRQLCVQNAIGGTNINKEKSRIFSQ--------------------RCDI 172
Query: 176 LVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 234
LVATPGRL+DH+ + L +L L++DE DRLL + ++ L T+
Sbjct: 173 LVATPGRLIDHLQSNNLKPRLSNLQTLILDEADRLLDQGFKRDLETIF------------ 220
Query: 235 DASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH--HPL 292
+FLP R+C M+ SATL+Q+ ++A L LH H
Sbjct: 221 ---SFLPD---RRHVPRQC----------------MLYSATLSQEIKQIASLYLHSNHKF 258
Query: 293 F--LTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL----GEEKCIVFTSSVESTH 346
LT GET + Y + S + P + LL G K I+F ++ +T
Sbjct: 259 VSTLTEGETNTH-KHAAQFYAIAPMSDIHPATISILLSDAAAHPGSSKTIIFCTTARATA 317
Query: 347 RLCTLLNHFGELRI-KIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN 405
+ G ++ ++ E Q+ R K+ AF+ VL SSD RGMD GV
Sbjct: 318 FAAEVARQAGGSQMPQVFEIHSRMSQNARIKSADAFKSATSAVLFSSDVTARGMDFPGVT 377
Query: 406 NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIP 465
V+ P+ + YIHR GRTARAG GR LL E L K + + PI
Sbjct: 378 LVLQVGLPSSAEQYIHRLGRTARAGAGGRGILLLSPPET----YFLAKREMSALPITPYT 433
Query: 466 SSL-IESLRPVYKSVRGGI 483
S+L ++ LR V +V G+
Sbjct: 434 STLSLDELRTVTNTVTTGL 452
>gi|403331185|gb|EJY64526.1| putative ATP-dependent RNA helicase DDX10 [Oxytricha trifallax]
Length = 961
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 120/407 (29%), Positives = 185/407 (45%), Gaps = 40/407 (9%)
Query: 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR---AVRCLRALVVL 108
F V + I + RD+ +++ TGSGKTLSY +PIV+ L + ++ L AL+++
Sbjct: 128 FIKMTEVQRAAISHAIAGRDVVVSARTGSGKTLSYLVPIVERLYHERWSSMDGLGALILV 187
Query: 109 PTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQE 168
P R+LALQ +V + LS GLA+G + E QE
Sbjct: 188 PVRELALQAFEVLRSFGAFHDLSAGLAIGGKDLNYE----------------------QE 225
Query: 169 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSD 228
++IL+ TPGRL+ H+N + G +L LV+DE DR+L ++ + +++
Sbjct: 226 RIRGMNILICTPGRLLQHMNESEGLDTSNLKMLVIDEVDRILDMGFKDTMEQIMR----- 280
Query: 229 NENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDL 288
N + + F + LK + R ++ D Y + +L D N A +
Sbjct: 281 NLPKKTQTMLFSATVGKILKDMARVNLK---PDHEYICIHDYDSIESLANDYNPNASAED 337
Query: 289 HHPLFLTTGETRYKLPERLESYKLI-CESKLKPLYLVALLQSLGEEKCIVFTSSVESTHR 347
+ T KL L Y +I E KL L+ + L+S + KCIVF S+ +
Sbjct: 338 KMIVDQLKSITPVKL---LHFYMVINIEDKLDTLF--SFLKSHQKNKCIVFFSACKQVRF 392
Query: 348 LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV 407
+L + + E G Q+Q+ R+ F E K VL +D +RG+D V+ V
Sbjct: 393 AYEAFKRL-KLGMIMLELHGRQKQTKRTAIYYEFVERKQAVLFCTDVASRGIDFPAVDWV 451
Query: 408 VNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 454
V YD P ++TYIHR GRTAR G E K K+ Q+
Sbjct: 452 VQYDCPEDLQTYIHRVGRTARYKSKGNALLFSTPAETKFIDKIQQRG 498
>gi|72389070|ref|XP_844830.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|62176321|gb|AAX70433.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei]
gi|70801364|gb|AAZ11271.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
Length = 753
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 129/432 (29%), Positives = 195/432 (45%), Gaps = 64/432 (14%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL----------PIV 91
A+ ++G S PVQ + I L D+C + TGSGKT ++ L P+
Sbjct: 126 AISHIGYISPTPVQA----QAIPAILSGTDVCARAVTGSGKTAAFLLPLLHLLLTRAPMK 181
Query: 92 QTLSNRAVRCLRALVVLPTRDLALQVKDVFAA-IAPAVGLSVGLAVGQSSIADEISELIK 150
QT N R +RA+V++PTR+L +Q + V +A GL V LA+G S
Sbjct: 182 QTRMNSKRRYIRAIVLVPTRELGMQCQQVLQQFLAFTTGLQVSLAIGGVS---------- 231
Query: 151 RPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD----HINATRGFTLEHLCYLVVDET 206
P L L++ DILVATPGRL+D H A + + +V+DE
Sbjct: 232 -----------PSAQLAALEACPDILVATPGRLVDLIHNHKGAQSAVDITGVEVVVLDEC 280
Query: 207 DRLLREAYQAWLPTVLQLTRSDNENR----FSDASTFLPSAFGSLKTIRRCGVERG---F 259
D++L + + +L+ R E R FS T F + V+ G
Sbjct: 281 DKMLTVVLRDQVVDILK--RVPEETRQVLMFSATMTTEVDEFAKEHLFKPKNVDIGHVAL 338
Query: 260 KDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYK------LPERLESYKLI 313
+ K + V++ L A + P + + D+ +TR K E +++
Sbjct: 339 QAKLRQQFVRVRLHADTSLQPTEENRGDVAPSAEGCQKKTRSKRSHDKPQSEGRQNHSEE 398
Query: 314 CE------SKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 367
E +K+K YLVAL EK ++FT + HRL L N G + E G
Sbjct: 399 SESEAEHMTKVKSRYLVALCTGYFREKTLIFTRYRTTAHRLRLLFNVIGFPSV---ELQG 455
Query: 368 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 427
Q Q R +L+ F G++ L S+D +RG+D++ V+ V+N+D P + YIHR GRTA
Sbjct: 456 NQLQEERFASLEKFASGEVNYLFSTDVASRGLDIKDVSTVINFDLPPTLTAYIHRVGRTA 515
Query: 428 RAGQLGRCFTLL 439
R G G +L+
Sbjct: 516 RIGGSGTAVSLV 527
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,961,717,184
Number of Sequences: 23463169
Number of extensions: 324633234
Number of successful extensions: 916477
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 28577
Number of HSP's successfully gapped in prelim test: 4724
Number of HSP's that attempted gapping in prelim test: 796956
Number of HSP's gapped (non-prelim): 64462
length of query: 530
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 383
effective length of database: 8,910,109,524
effective search space: 3412571947692
effective search space used: 3412571947692
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 79 (35.0 bits)