BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009641
(530 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7FGZ2|RH1_ARATH DEAD-box ATP-dependent RNA helicase 1 OS=Arabidopsis thaliana
GN=RH1 PE=2 SV=3
Length = 522
Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/475 (74%), Positives = 410/475 (86%)
Query: 2 EEAKKKSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQE 61
+E K + V+PWMR+PVDVS E+C LD LPCL+P+LK AL+NMGISSLFPVQVAVW E
Sbjct: 5 KEDKTEMDSVVPWMRAPVDVSNVENCALDTLPCLNPKLKKALENMGISSLFPVQVAVWHE 64
Query: 62 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121
TIGPG FERD+C+NSPTGSGKTLSYALPIVQ L++R VRCLRALVVLPTRDLALQVKDVF
Sbjct: 65 TIGPGGFERDICVNSPTGSGKTLSYALPIVQLLASRPVRCLRALVVLPTRDLALQVKDVF 124
Query: 122 AAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPG 181
AIAPAVGLSVG AVGQSSIA EIS+LIK PKL+AGICYDP+D+ Q L+SAVDILVATPG
Sbjct: 125 DAIAPAVGLSVGSAVGQSSIAGEISQLIKTPKLDAGICYDPDDLSQNLESAVDILVATPG 184
Query: 182 RLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLP 241
RLMDHIN T+GFTLEHL YLVVDETDRLLREAYQ+WLPTVLQLT++ +++ F + F+P
Sbjct: 185 RLMDHINNTKGFTLEHLRYLVVDETDRLLREAYQSWLPTVLQLTQTSDDSLFPSFTPFVP 244
Query: 242 SAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRY 301
SAFGSL+T+RR VERGFK KPYPRLVKMVLSATLTQDP+KL QLDLHHPLF+TTG +RY
Sbjct: 245 SAFGSLQTVRRQSVERGFKGKPYPRLVKMVLSATLTQDPSKLIQLDLHHPLFMTTGGSRY 304
Query: 302 KLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIK 361
+LPE+LE +LICE+ +KP+YLVALL+S EKCI+FTSSVE+T RLC LLN FG+ +IK
Sbjct: 305 RLPEKLECLRLICETGMKPVYLVALLKSWEGEKCIIFTSSVETTRRLCKLLNFFGDPKIK 364
Query: 362 IKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIH 421
KEYSG QS+RSK LKAFR+G IQVLV+SDA+TRGMDV+GV NV+NYD P + KT+IH
Sbjct: 365 AKEYSGGLNQSLRSKELKAFRKGDIQVLVASDALTRGMDVKGVTNVINYDMPPFAKTFIH 424
Query: 422 RAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVY 476
RAGRTARAGQ GRCFTLL EV+RF KLL+K +DSCPI+ IP + ++S+R Y
Sbjct: 425 RAGRTARAGQAGRCFTLLSNHEVRRFSKLLEKVGSDSCPIYPIPPTSLDSIRATY 479
>sp|Q0DWT8|RH1_ORYSJ DEAD-box ATP-dependent RNA helicase 1 OS=Oryza sativa subsp.
japonica GN=Os02g0795900 PE=2 SV=1
Length = 521
Score = 638 bits (1646), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/471 (66%), Positives = 370/471 (78%), Gaps = 3/471 (0%)
Query: 9 MPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLF 68
+P LPWMR+PVD+ F CP+ HLP LDPRL LQ MGI S FPVQVA W ETIGPG F
Sbjct: 18 VPHLPWMRNPVDIDSFSGCPVAHLPRLDPRLVKPLQRMGIESFFPVQVAAWLETIGPGAF 77
Query: 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128
ERD+CINSPTGSGKTL+YALPIVQ L+ R VRCLRALVVLPTRDLALQVK+VF AIAP V
Sbjct: 78 ERDICINSPTGSGKTLAYALPIVQMLATRKVRCLRALVVLPTRDLALQVKEVFDAIAPVV 137
Query: 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHIN 188
GLSVG AVGQSSIADE+S LI++ K D E + E Q+ VDILVATPGRLMDHI+
Sbjct: 138 GLSVGSAVGQSSIADEVSNLIEKSKQGLFPSLDEEYIQMEPQTKVDILVATPGRLMDHIS 197
Query: 189 ATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR-FSDASTFLPSAFGSL 247
T+GF+LEHL YLVVDETDR+LREAYQ+WLPTV+QLTRS ++N +SD + + L
Sbjct: 198 MTKGFSLEHLQYLVVDETDRMLREAYQSWLPTVIQLTRSSDQNHSWSDMNG--ETLLHPL 255
Query: 248 KTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 307
TIRR GVERGFK K +PRL K+VLSATLTQDP+KL+QL+L HPL L +G+ RY++P +L
Sbjct: 256 TTIRRSGVERGFKGKSFPRLAKIVLSATLTQDPSKLSQLELQHPLLLNSGKKRYRIPTKL 315
Query: 308 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 367
+SYKL+C+S LKPL L+ LLQ L EKC+VFTSSVES+HRL TLL F +L K EYS
Sbjct: 316 QSYKLVCKSNLKPLSLIVLLQELRGEKCLVFTSSVESSHRLSTLLEFFEDLPFKFSEYSR 375
Query: 368 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 427
LQR+S R KTL AF+EGKI VL+ +D M RG+ ++G+ V+NYD P Y+KTYIHRAGRTA
Sbjct: 376 LQRESTRRKTLDAFKEGKIDVLIGTDRMARGIHIDGLRYVINYDMPPYVKTYIHRAGRTA 435
Query: 428 RAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKS 478
RAG+ G CFT L K EVK F K+L+KADN SC +HS+P +E+LRPV+ S
Sbjct: 436 RAGESGSCFTFLRKHEVKAFDKMLKKADNSSCSLHSLPEESVETLRPVFSS 486
>sp|Q8N8A6|DDX51_HUMAN ATP-dependent RNA helicase DDX51 OS=Homo sapiens GN=DDX51 PE=1 SV=3
Length = 666
Score = 307 bits (787), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 191/499 (38%), Positives = 273/499 (54%), Gaps = 52/499 (10%)
Query: 7 KSMPVLP-WMRSP--VDVSLFED-CPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQET 62
K P LP W+ P V ++ ED P++ +P + P L+ L+ GISS FPVQ AV
Sbjct: 173 KVQPFLPRWLAEPNCVRRNVTEDLVPIEDIPDVHPDLQKQLRAHGISSYFPVQAAVIPAL 232
Query: 63 ---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
+G G + DLC+++PTGSGKTL++ +P+VQ L +R V +RALVVLPT++
Sbjct: 233 LESAACGFLVGRGGYRPSDLCVSAPTGSGKTLAFVIPVVQALLSRVVCHIRALVVLPTKE 292
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA QV VF A L V L GQ S+A E L+++ +
Sbjct: 293 LAQQVSKVFNIYTDATPLRVSLVTGQKSLAKEQESLVQK-------------TADGYRCL 339
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
DI+VATPGRL+DHI+ T GF+L+ L +L++DE DR++ +Q+WLP V+
Sbjct: 340 ADIVVATPGRLVDHIDQTPGFSLQQLRFLIIDEADRMIDSMHQSWLPRVVAAA------- 392
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
F P A L+ + V P L K++ SATLTQ+P KL QL LH P
Sbjct: 393 FQSEDPADPCAL--LQRRQAQAVTAASTCCPQMPLQKLLFSATLTQNPEKLQQLGLHQPR 450
Query: 293 FLTTG--------------ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVF 338
+TG +Y P L + + C KPL ++ L+ +G + + F
Sbjct: 451 LFSTGLAHRGLEDTDGDGDSGKYAFPVGLTHHYVPCSLSSKPLVVLHLVLEMGFSRVLCF 510
Query: 339 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRG 398
T+S E++HRL L+ FG + + E+S R LK F +GKIQ+L+S+DA RG
Sbjct: 511 TNSRENSHRLFLLVQAFGG--VDVAEFSSRYGPGQRRMILKQFEQGKIQLLISTDATARG 568
Query: 399 MDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDS 458
+DV+GV VVNYD P Y++TY+HR GRTARAG+ G+ FTLL K + +RF ++L +A
Sbjct: 569 IDVQGVELVVNYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLKVQERRFLRMLTEAGAPE 628
Query: 459 CPIHSIPSSLIESLRPVYK 477
H + S L++ L P Y+
Sbjct: 629 LQRHELSSKLLQPLVPRYE 647
>sp|Q6DRI7|DDX51_DANRE ATP-dependent RNA helicase DDX51 OS=Danio rerio GN=ddx51 PE=2 SV=1
Length = 652
Score = 301 bits (772), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 190/495 (38%), Positives = 267/495 (53%), Gaps = 53/495 (10%)
Query: 11 VLP-WMRSPVDVSLFEDC-----PLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQ---E 61
VLP W+ P DV + +D P+ +P + P L LQ GI S FPVQ V E
Sbjct: 168 VLPQWLSQP-DV-IQKDIKSNLIPISEVPGICPTLLRKLQTNGIQSFFPVQAEVIPAILE 225
Query: 62 TIGPGLF-------ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114
++G GL RD+C+++PTGSGKTL++ +P+VQ LS R VR +RAL VLPT++LA
Sbjct: 226 SVGSGLLVGPGGYRPRDVCVSAPTGSGKTLAFVIPVVQALSKRVVRQVRALAVLPTKELA 285
Query: 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVD 174
QV +VF+A L V + GQ S A E + L ++ G+ + S D
Sbjct: 286 QQVSNVFSAYTEGSSLKVVMITGQKSFAAEQTAL---SEIRGGVSH----------SMAD 332
Query: 175 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 234
I+VATPGRL+DHIN F+L+HL +L++DE DR++ +Q+WL V + S +
Sbjct: 333 IVVATPGRLVDHINKNSSFSLQHLRFLIIDEADRMIDSMHQSWLSQVTKAVYSTPGE--T 390
Query: 235 DASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP-LF 293
S F + G + P L K++ SATLTQ+P KL LDLH P LF
Sbjct: 391 HTSVFRRTVPGPITAASLS--------PPQIPLQKLLFSATLTQNPEKLQLLDLHQPRLF 442
Query: 294 LTT---------GETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 344
+T + + P+ L Y + C KPL ++ L L + FT+S E
Sbjct: 443 SSTHSLTDNPAQSQDTFHFPQGLSEYYVPCTFSKKPLIILHFLLRLKFSPALCFTNSREG 502
Query: 345 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 404
HRL L+ FG +++ E+S R KTLK F +GKI +L+S+DA RG+D+ GV
Sbjct: 503 AHRLYLLVKLFGG--VEVAEFSSKLSPGERQKTLKDFEKGKIPLLISTDAAARGIDINGV 560
Query: 405 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSI 464
V+NYD P YI+TYIHR GRTARAG+ G FT L K + KRF K++ A + +
Sbjct: 561 KCVINYDAPQYIRTYIHRVGRTARAGKAGLAFTFLLKVQEKRFLKMVSDAGSPGIQKQHV 620
Query: 465 PSSLIESLRPVYKSV 479
++S+ Y+ V
Sbjct: 621 HPEALKSMESRYEQV 635
>sp|Q6P9R1|DDX51_MOUSE ATP-dependent RNA helicase DDX51 OS=Mus musculus GN=Ddx51 PE=2 SV=1
Length = 639
Score = 297 bits (761), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 185/505 (36%), Positives = 273/505 (54%), Gaps = 59/505 (11%)
Query: 7 KSMPVLP-WMRSP--VDVSLFED-CPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQET 62
K P LP W+ P V S+ ED P++ +P + P L+ L+ GI+S FPVQ AV
Sbjct: 145 KVQPFLPAWLAKPSCVKKSVTEDLTPIEDIPEVHPDLQKQLRANGITSYFPVQAAVIPAL 204
Query: 63 ---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
IG G ++ DLC+++PTGSGKTL++ +P+VQ L +R V +RALVVLPT++
Sbjct: 205 LESADHGFLIGRGGYQPSDLCVSAPTGSGKTLAFVIPVVQALLHRVVCHIRALVVLPTKE 264
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA QV VF L V L GQ S+A E L+++ +
Sbjct: 265 LAQQVSKVFNIYTDTTPLRVALVTGQKSLAKEQESLVQK-------------TADGFRCL 311
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
DI+VATPGRL+DHI+ T GF+L+ L +L++DE DR++ +Q+WLP V+
Sbjct: 312 ADIVVATPGRLVDHIDQTPGFSLQQLRFLIIDEADRMIDSMHQSWLPRVVA--------- 362
Query: 233 FSDASTFLPSAFGSLKTIRRC---GVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH 289
A+ + GS ++R + P L K++ SATLTQDP KL +L L+
Sbjct: 363 ---AAFYSEGPTGSCALLQRTQPQALTAASTCVPQMPLQKLLFSATLTQDPEKLQRLGLY 419
Query: 290 HPLFLTT---------------GETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEK 334
P +T +Y P L + + C KPL ++ L+ + +
Sbjct: 420 QPRLFSTRLGQQSPKDTAEVDENSGKYTFPVGLTHHYVPCRLSSKPLIVLHLVLRMSCSR 479
Query: 335 CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394
+ FT+S E++HRL L FG + + E+S R K LK F +GKIQ+L+S+DA
Sbjct: 480 ALCFTNSRENSHRLYLLAQAFGG--VSVAEFSSRYGPGQRKKILKQFEQGKIQLLISTDA 537
Query: 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 454
RG+DV+GV V+NYD P Y++TY+HR GRTARAG+ G+ FTLL K + ++F +++ +A
Sbjct: 538 TARGIDVQGVELVINYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLKVQERKFLQMVSEA 597
Query: 455 DNDSCPIHSIPSSLIESLRPVYKSV 479
H IP L++ L Y++
Sbjct: 598 GVPELTHHEIPRKLLQPLVARYETA 622
>sp|Q54BD6|DDX51_DICDI Probable ATP-dependent RNA helicase ddx51 OS=Dictyostelium
discoideum GN=ddx51 PE=3 SV=1
Length = 563
Score = 254 bits (648), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 165/441 (37%), Positives = 249/441 (56%), Gaps = 46/441 (10%)
Query: 43 LQNMGISSLFPVQ---VAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV 99
L+ I +LFPVQ V T G D+C+ +PTGSGKTL+YA+P+VQ + R V
Sbjct: 30 LKEQSIINLFPVQQEIVPFINRTEG-----HDICVCAPTGSGKTLAYAIPLVQKIVKRVV 84
Query: 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 159
R +R V++PT DL +QV+ F +I L V L++G E LIK
Sbjct: 85 RRVRVAVIVPTHDLVIQVEKTFQSIIKGTDLVV-LSLGVKPFHIEQKLLIKNHSYGEHAL 143
Query: 160 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 219
Y +S VDI+V+TPGR++DHIN T GFTL++L YLV+DE DRLLR+++Q WL
Sbjct: 144 Y---------ESLVDIIVSTPGRIVDHINETLGFTLKYLNYLVIDEADRLLRQSFQDWLE 194
Query: 220 TVLQLTRSDNE-NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYP---------RLVK 269
V+ T ++ N+ + ++ G ++ + KD +LVK
Sbjct: 195 IVIDSTNQHSDLNQQQEEQLIKYNSKGDIELFEKS---ISLKDNNNQMNHLCWSEFKLVK 251
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETR---YKLPERLESYKLICESKLKPLYLVAL 326
++LSAT+T +P+K++ L L+ PLF TT +T+ Y +P L+ +I KPL L+ +
Sbjct: 252 LLLSATMTYNPSKISLLQLNAPLFFTTSKTKEIKYSMPSTLKECYIISNGDQKPLVLLNI 311
Query: 327 L-QSL--------GEEKCIVFTSSVESTHRLCTLLNHFGE---LRIKIKEYSGLQRQSVR 374
+ +SL ++K I FT SV+ THRL TLL G+ L+ +EYS R
Sbjct: 312 IYESLLKNNANGENKKKIICFTKSVDITHRLNTLLKLIGQVDKLKFTCEEYSSSLSTVER 371
Query: 375 SKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 434
+ L F+ +I +L+ SD M+RGMD++ ++ V+NY+ P I Y+HR GRTARAG G
Sbjct: 372 ADLLSRFKLNQIDILICSDIMSRGMDIQDIDVVINYNTPPNITLYVHRVGRTARAGNFGV 431
Query: 435 CFTLLHKDEVKRFKKLLQKAD 455
+T++ K E+K + +++KA+
Sbjct: 432 SYTIVDKSEIKYYISMMKKAE 452
>sp|P26802|DDX51_DROME Probable ATP-dependent RNA helicase Dbp73D OS=Drosophila
melanogaster GN=Dbp73D PE=2 SV=3
Length = 687
Score = 250 bits (638), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 188/540 (34%), Positives = 264/540 (48%), Gaps = 72/540 (13%)
Query: 5 KKKSMPVLP-WMRSPV-----DVSLFEDCP----LDHLPCLDPRLKVALQNMGISSLFPV 54
KKK LP W+ P + E+ P +D L L+ AL+ M I LFPV
Sbjct: 104 KKKVQMQLPNWLAHPTIIEGGSLQPEEEVPASEAIDQLDYLEKYTCQALKQMKIKRLFPV 163
Query: 55 QVAV--W---QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109
Q V W P RD+C+++PTGSGKTL++A+PIVQ LS R +RALVVLP
Sbjct: 164 QKQVIPWILEAHAKPPPFRPRDICVSAPTGSGKTLAFAIPIVQLLSQRVDCKVRALVVLP 223
Query: 110 TRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL 169
+LALQV V + + L V L Q + DE +L+++ K G Y
Sbjct: 224 VAELALQVYRVISELCSKTELEVCLLSKQHKLEDEQEKLVEQYK---GKYY--------- 271
Query: 170 QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDN 229
S DI+V TPGRL+DH++AT+GF L+ L +LV+DE DR++ +Q WL + +
Sbjct: 272 -SKADIVVTTPGRLVDHLHATKGFCLKSLKFLVIDEADRIMDAVFQNWLYHLDSHVKETT 330
Query: 230 ENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH 289
+ A T P + L+ F +P+ K++ SATL+QDP KL L L
Sbjct: 331 DQLL--AGTQAPLCYAELQA--------SFGKQPH----KLLFSATLSQDPEKLQDLRLF 376
Query: 290 HPLFLTTGET-------------------------RYKLPERLESYKLICESKLKPLYLV 324
P T T RY P L + E +LKPL +
Sbjct: 377 QPRLFATVLTMPVLKDATEEGADTEALTDPGQFVGRYTTPAELTEQYCVTELRLKPLTVF 436
Query: 325 ALLQSLGEEKCIVFTSSVESTHRLCTLLN-HFGELRIKIKEYSGLQRQSVRSKTLKAFRE 383
AL++ ++ + FT+S + RL +L F + K+ E SG VR++ L+ F
Sbjct: 437 ALVEKYKWKRFLCFTNSSDQATRLTFVLKVLFQKYSTKVSELSGNLSAKVRNERLRDFAA 496
Query: 384 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443
GKI L+ SDA+ RG+DV V+ V++Y+ P +I TYIHR GRTARAG+ G T+L + +
Sbjct: 497 GKINGLICSDALARGIDVADVDVVLSYETPRHITTYIHRVGRTARAGRKGTAVTVLTEQD 556
Query: 444 VKRFKKLLQKADND-SCPIHSIPSSLIESLRPV-YKSVRGGISDEAFWKVGCDLHGVNRV 501
+ FKK+L A+ IH P IE V YK G+ E + NRV
Sbjct: 557 MTLFKKILSDANKGLGEEIHVSPD--IEIQHAVEYKEALAGLRSEKVKNKNQKMAEKNRV 614
>sp|Q76PD3|DBP6_SCHPO ATP-dependent RNA helicase dbp6 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=dbp6 PE=2 SV=1
Length = 604
Score = 228 bits (582), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 163/482 (33%), Positives = 236/482 (48%), Gaps = 64/482 (13%)
Query: 6 KKSMPVLP-WMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIG 64
K VLP W+ P+ V L + +L LQ I+ F VQ AV +
Sbjct: 104 KNITSVLPKWLAEPITVDPNTTVEFSSL-NISSKLVERLQKQNITRGFAVQAAVLPLLLQ 162
Query: 65 PGL------FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK 118
G + D+C+++ TGSGKTLSY +PIVQ LS+R V LR +V++PTR+L +QV
Sbjct: 163 DGRHGPMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTVQVA 222
Query: 119 DVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVA 178
F GL V GQ S+ E +L E + +D+LV+
Sbjct: 223 KTFEYYMSGAGLQVCAWTGQKSLRHETYQLNG----------------DENECRIDVLVS 266
Query: 179 TPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRS----DNENRFS 234
TPGRL+DHI F+L+HL Y+V+DE DRLL +++Q W+ TV+ N++
Sbjct: 267 TPGRLVDHIRNDESFSLQHLRYMVIDEADRLLDQSFQDWVDTVMMEISHPKCLQNKSNIL 326
Query: 235 D-----ASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH 289
D + TFLP +L R P P L K+V SATLT+DP+K+A L LH
Sbjct: 327 DLDQNISPTFLPD-IDTLLPYRL----------PSP-LQKLVFSATLTRDPSKIASLKLH 374
Query: 290 HPLFLTT----------GETR-----YKLPERLESYKLICESKLKPLYLVALLQSLGEEK 334
+P + GE + +P L+ Y + S+ KP+ L L+ S
Sbjct: 375 NPRLVLVQNKDMEVDDGGEIEDDAIVFSVPPTLQEYHVSVSSE-KPILLYHLIHSKNLTN 433
Query: 335 CIVFTSSVEST---HRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVS 391
+ F S E+ HRL L++ ++ + R K + F G + +LV
Sbjct: 434 ILCFVKSNEAAARLHRLLELIHESLNQSFSCGLFTSSLSRDERKKIISRFATGDLNLLVC 493
Query: 392 SDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLL 451
SD M RG+DV NV+NYD P +++Y+HR GRTARAG+ G +TL+ E F KL+
Sbjct: 494 SDLMARGIDVANTQNVINYDPPLSVRSYVHRIGRTARAGREGFAWTLVQSHEGHHFSKLV 553
Query: 452 QK 453
++
Sbjct: 554 KQ 555
>sp|A2QA23|DBP6_ASPNC ATP-dependent RNA helicase dbp6 OS=Aspergillus niger (strain CBS
513.88 / FGSC A1513) GN=dbp6 PE=3 SV=1
Length = 593
Score = 220 bits (560), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 177/471 (37%), Positives = 243/471 (51%), Gaps = 53/471 (11%)
Query: 8 SMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETI-GPG 66
S+P PW+ +P+ S E L +D L L++ G F VQ V + GP
Sbjct: 104 SLP--PWLANPLRASAQERRKFADL-GIDSSLLRVLEDNGYREAFAVQSTVIPLLLQGPT 160
Query: 67 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126
DLCI++ TGSGKTLSY LP+V L LR L+V+PTR+L Q ++ A
Sbjct: 161 NHPGDLCISAATGSGKTLSYVLPLVTALKPLPAPRLRGLIVVPTRELVKQAREACELCAA 220
Query: 127 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDH 186
GL V AVG +I DE E + G + E VDIL+ TPGRL+DH
Sbjct: 221 GSGLRVASAVGNVAIKDEQRESL------PGYVHRSE-------PNVDILICTPGRLVDH 267
Query: 187 INATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFG- 245
+ T+GFTL++L +LV+DE DRLL E++Q W+ V+ S + P AFG
Sbjct: 268 LRYTKGFTLKNLEWLVIDEADRLLNESFQEWVDVVMT----------SLDARKAPDAFGF 317
Query: 246 SLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG-------- 297
S + G+ K+ PR K+VLSAT+T+D KL L L +P + G
Sbjct: 318 SGNFLSGLGLPIQSKE---PR--KVVLSATMTRDVTKLNSLRLANPKLVVIGSDAAATED 372
Query: 298 --------ETRYKLPERLESYKL-ICESKLKPLYLVALLQS--LGEEKCIVFTSSVESTH 346
+ ++ LP LE + + + + KPLYL+ LL S E K +VFT S ES
Sbjct: 373 ESGGVAPSDEQFTLPPTLEEHTVSVGDGSQKPLYLLRLLLSHIKLETKILVFTKSSESAS 432
Query: 347 RLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN 405
RL LL L +I + S KTL A+R GKI V++++D +RG+D+ +
Sbjct: 433 RLARLLALLEPSLSDRIGTIIKSNKSSASRKTLTAYRRGKISVIIATDRASRGLDLRSLT 492
Query: 406 NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 456
+VVNYD PA I TY+HR GRTARAGQ G +TL+ E K F + K +
Sbjct: 493 HVVNYDVPASITTYVHRVGRTARAGQKGSAWTLVAHREGKWFASQIAKGSD 543
>sp|A5E726|DBP6_LODEL ATP-dependent RNA helicase DBP6 OS=Lodderomyces elongisporus
(strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 /
NRRL YB-4239) GN=DBP6 PE=3 SV=1
Length = 663
Score = 216 bits (551), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 154/466 (33%), Positives = 235/466 (50%), Gaps = 78/466 (16%)
Query: 12 LPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQE--------TI 63
L W+ +P +++ + P P L P + L+++G + F VQV V + +
Sbjct: 207 LDWLTTPEYIAIADTKPFSEFP-LSPFMHENLESLGFENAFAVQVGVLSKLLPEIQANKL 265
Query: 64 GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123
P F D+ +N+ TGSGKTL+Y++PI+++L +R V +RA+V++PT+ L QV+
Sbjct: 266 RPDAFG-DVLVNASTGSGKTLAYSIPIIESLKDRVVPRVRAIVLVPTKPLINQVRATMLQ 324
Query: 124 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL 183
+A L++ SI +E LI + D++++TPGRL
Sbjct: 325 LALGTNLNIVSLKNDISIREESERLI--------------------ELVPDVVISTPGRL 364
Query: 184 MDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSA 243
++H+ A +L L YLVVDE DRLL +++Q W ++ ++ + +
Sbjct: 365 VEHL-AMDSISLSSLRYLVVDEADRLLNQSFQNWSQILI--------SKIHLQQVYDVAN 415
Query: 244 FGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR--- 300
SLK + K + SATLT D KLA LD H+P L +++
Sbjct: 416 VWSLK------------------VQKFIFSATLTTDAGKLASLDFHNPRLLIVNDSQRLV 457
Query: 301 ---YKLPERLESYKL---ICESKLKPLYLVALLQSLGEEK---CIVFTSSVESTHRLCTL 351
+ +P L YKL + +S LKPL L L + +EK +VFT S ES+ RLCTL
Sbjct: 458 NELFSVPAMLSEYKLNFGVAKSSLKPLILAKFL--IAQEKLSDVLVFTKSNESSIRLCTL 515
Query: 352 LNH-FGELRIKIKEYSGL-----QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN 405
L F + ++ K G R S+RSK LK F KI +LV++D + RG+DV +
Sbjct: 516 LQAIFDRICLQEKVKVGFMNLTNNRTSLRSKILKDFTSQKINILVATDLIARGLDVTSIK 575
Query: 406 NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH-KDEVKRFKKL 450
+VVNYD + Y+HR GRTARA Q G + L+ K E K FK +
Sbjct: 576 DVVNYDLLNSSREYVHRVGRTARANQAGNAYNLVFGKGEEKWFKTI 621
>sp|A3LSJ2|DBP6_PICST ATP-dependent RNA helicase DBP6 OS=Scheffersomyces stipitis (strain
ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545)
GN=DBP6 PE=3 SV=2
Length = 591
Score = 207 bits (527), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 142/463 (30%), Positives = 228/463 (49%), Gaps = 74/463 (15%)
Query: 12 LPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVW--------QETI 63
L W+ +P+ S + P + P L L+ ++ F VQ+A+ + +
Sbjct: 138 LDWLATPIYASPEDSKPFSEFE-ISPFLLKNLERDNFTTAFSVQIAIMDILLHDIKRNRL 196
Query: 64 GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123
P + + D+ +N+ TGSGKTL+Y++PI++ L NR V +RA+V++PT+ L QVK F
Sbjct: 197 EPDV-KGDILVNAATGSGKTLAYSIPIIEALHNRVVPRVRAIVLVPTKPLINQVKATFVQ 255
Query: 124 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL 183
++ LSV SI +E +++ P DI+V+TPGRL
Sbjct: 256 LSRGTNLSVVSLRNDVSIKEEGIKIVNSPP--------------------DIIVSTPGRL 295
Query: 184 MDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSA 243
++HI + + L L +LV+DE DRLL +++Q W ++ D
Sbjct: 296 VEHI-SNKSINLNSLQFLVIDEADRLLNQSFQNWCQVLISSLEGD--------------- 339
Query: 244 FGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR--- 300
+ +K P K++ SATLT D KL+ L P + + +
Sbjct: 340 ---------VNIAEEWKITPQ----KLIFSATLTTDSGKLSALKFQKPRLVIVNDRKQLV 386
Query: 301 ---YKLPERLESYKL---ICESKLKPLYLVA-LLQSLGEEKCIVFTSSVESTHRLCTLLN 353
+ +P L Y + ++ +KPL L LL++ ++FT S E++ RLC LL
Sbjct: 387 NEIFNVPSSLSEYTIQFGTAKASIKPLILAKYLLENNKLSNVLIFTKSNEASIRLCKLLE 446
Query: 354 -HFGELR--IKIKEYSGLQRQS-VRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN 409
FG+L + I + +S +R+K LK F KI +LV++D + RG+D+ + +V+N
Sbjct: 447 LMFGKLHPSMNIAYINSTNNKSAIRTKILKDFSTQKINILVATDLIARGIDILSITDVIN 506
Query: 410 YDKPAYIKTYIHRAGRTARAGQLGRCFTL-LHKDEVKRFKKLL 451
YD P + Y+HR GRTARA Q G +TL K E K FKK++
Sbjct: 507 YDLPNSSREYVHRVGRTARANQTGHAYTLCFGKGEAKWFKKII 549
>sp|A5DK47|DBP6_PICGU ATP-dependent RNA helicase DBP6 OS=Meyerozyma guilliermondii
(strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC
10279 / NRRL Y-324) GN=DBP6 PE=3 SV=2
Length = 631
Score = 204 bits (518), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 163/469 (34%), Positives = 234/469 (49%), Gaps = 81/469 (17%)
Query: 12 LPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQ--------ETI 63
L W+ +P+ S E P +K LQ+ G SS F VQV+V + + I
Sbjct: 176 LDWLATPIYASTTETVPFSSFGLSSSMVK-NLQSNGFSSAFSVQVSVLKLLLPDMESQAI 234
Query: 64 GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123
P + DL +N+ TGSGKTL YA+PI+++L NR V +RA+V++PT+ L QVK FA
Sbjct: 235 RPDI-GGDLLVNAATGSGKTLGYAIPIIESLRNRIVPRVRAIVLVPTKPLISQVKATFAM 293
Query: 124 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL 183
++ LSV SI DE Q LQ DI+V+TPGRL
Sbjct: 294 LSKNTNLSVVSLRSDISINDEA---------------------QRLQVVPDIIVSTPGRL 332
Query: 184 MDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPS 242
++H+ T G L+ L YLV+DE DRLL +++Q W T+ ++R D+ N S+
Sbjct: 333 VEHL--TNGHINLKSLRYLVIDEADRLLNQSFQNWCETL--MSRIDS-NPISELD----- 382
Query: 243 AFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR-- 300
+T R P + K+V SATLT D +L+ L L P + +
Sbjct: 383 -----QTWR-------------PSVQKLVFSATLTTDAGRLSMLKLQRPRLIIVNDRHEL 424
Query: 301 ----YKLPERLESYKL---ICESKLKPLYLVALLQSLGEEKCI---VFTSSVESTHRLCT 350
+ +P L+ YKL S KPL L L S E+K + VF S E++ RLC
Sbjct: 425 VNELFTVPATLQEYKLSLGSARSSAKPLVLAKFLMS--EQKLVNTLVFAKSNEASLRLCR 482
Query: 351 LLNH----FGELRIKIKEYSGLQR-QSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN 405
LL FG L + + + S R+K LK F + +LV +D + RG+D+ +
Sbjct: 483 LLQLLFRVFG-LDVTVSYLNSTNNAASTRAKILKDFANQTVHILVVTDLIARGIDIATIT 541
Query: 406 NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL-LHKDEVKRFKKLLQK 453
NV+NYD P + Y+HR GRTARA Q G +T+ K E K F +L+++
Sbjct: 542 NVINYDLPNSSRDYVHRVGRTARANQDGEAYTMCFGKGETKWFTQLVRE 590
>sp|Q6BPT8|DBP6_DEBHA ATP-dependent RNA helicase DBP6 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=DBP6 PE=3 SV=2
Length = 576
Score = 202 bits (514), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 153/468 (32%), Positives = 232/468 (49%), Gaps = 75/468 (16%)
Query: 12 LPWMRSPVDVSLFEDCPLDHL--PCLDPRLKVALQNMGISSLFPVQVAVW--------QE 61
L W+ +P+ + E P P L + L+NMG S F VQ++V +
Sbjct: 112 LDWLTTPIYTAPEETKPFAEFQNPPLSSLMIKNLRNMGFESAFSVQISVLNLMLKDIERN 171
Query: 62 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121
+ P + DL +N+ TGSGKTL+Y++PI+++L V +RA++++PT+ L QVK
Sbjct: 172 RLQPDM-RGDLLVNASTGSGKTLAYSIPIIESLQTVKVPRVRAIILVPTKPLINQVKTTL 230
Query: 122 AAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAV-DILVATP 180
++ LS+ S+ +++S IK E GI +LQ+ DI+V+TP
Sbjct: 231 NQLSKGTNLSI------VSLKNDLS--IK----EEGI---------KLQTNEPDIIVSTP 269
Query: 181 GRLMDHINATRGF-TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTF 239
GRL+DH+ T G+ +L++L YLV+DE DRLL +++Q W
Sbjct: 270 GRLVDHL--TNGYISLKNLQYLVIDEADRLLNQSFQNW-------------------CQI 308
Query: 240 LPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET 299
L S I+ + +K + KM+ SATLT D KL+ L H P +
Sbjct: 309 LISKIDEFTNIKERNISNSWK----LNVQKMIFSATLTTDAGKLSLLKFHKPRLIIVNNK 364
Query: 300 R------YKLPERLESYKL---ICESKLKPLYLVALLQSLGE-EKCIVFTSSVESTHRLC 349
+ LP L +KL +S LKPL L L S + ++FT S +++ RL
Sbjct: 365 EQLVNEMFSLPATLNEFKLQFGSAKSSLKPLILSKFLLSKNKLANVLIFTKSNDASLRLS 424
Query: 350 T----LLNHFGELRIKIKEYSGLQRQ-SVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 404
++N G I I + SVRSK LK F + I +LV++D + RG+D+ +
Sbjct: 425 RLLSLIMNKLGSETINIAYINSTNNTTSVRSKILKDFSKQTINILVATDLIARGIDILSI 484
Query: 405 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL-LHKDEVKRFKKLL 451
+V+NYD P + Y+HR GRTARA Q G + K E K FKKL+
Sbjct: 485 TDVINYDLPNSSREYVHRVGRTARANQEGFAYNFCFGKGEAKWFKKLM 532
>sp|A7TFZ9|DBP6_VANPO ATP-dependent RNA helicase DBP6 OS=Vanderwaltozyma polyspora
(strain ATCC 22028 / DSM 70294) GN=DBP6 PE=3 SV=1
Length = 637
Score = 198 bits (504), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 144/434 (33%), Positives = 217/434 (50%), Gaps = 85/434 (19%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGL----------FER---DLCINSPTGSG 81
+DP+L +Q + FP+Q ++ ET+ P L F R D+ +N+ TGSG
Sbjct: 182 IDPKLLKNIQQNFSTDTFPIQ-SILLETLLPTLNFSYNITKKNFTRRVGDVLVNASTGSG 240
Query: 82 KTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSI 141
KTL+Y++PI+Q LS R V LRALV++PT+ L QV + F +A L V ++ ++S+
Sbjct: 241 KTLAYSIPILQILSKRTVNKLRALVIVPTKLLINQVYETFNNLAQGTSLIVSISKLENSL 300
Query: 142 ADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYL 201
+E +L LQ+ DIL+ TPGRL+DH+ + L +L +L
Sbjct: 301 KEENKKL--------------------LQNEPDILITTPGRLVDHLQSG-AVNLRNLKFL 339
Query: 202 VVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKD 261
V+DE DRLL +++Q W +L ++D ++ +P
Sbjct: 340 VLDEADRLLNQSFQNWCNELLNKLKTDKQDH-------MPG------------------- 373
Query: 262 KPYPRLVKMVLSATLTQDPNKLAQLDLHHP-LFLTTGETRYKLPERLESYKL---ICESK 317
+VKMV SATLT + KL L ++P LF+ Y LP L+ Y L ++
Sbjct: 374 ----NIVKMVFSATLTTNTEKLHGLQFYNPKLFVMDSVKLYHLPRMLQEYNLHIPTAKTS 429
Query: 318 LKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKT 377
KPL+L+ LL + K +VF S ES+ RL +L + I+ K S SV S
Sbjct: 430 YKPLFLLRLLSEINGSKMLVFVKSNESSLRLASL----LSIMIEHKLGSQFDINSVNSNN 485
Query: 378 LKA------------FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGR 425
KA K+QVL+++D M+RG+D+ + +V+NYD P + YIHR GR
Sbjct: 486 TKAENRRIVNEFASNNNTSKVQVLITTDVMSRGVDINDITDVLNYDVPISSQQYIHRCGR 545
Query: 426 TARAGQLGRCFTLL 439
TARA G + +L
Sbjct: 546 TARAQSKGTAYNML 559
>sp|Q59MW2|DBP6_CANAL ATP-dependent RNA helicase DBP6 OS=Candida albicans (strain SC5314
/ ATCC MYA-2876) GN=DBP6 PE=3 SV=1
Length = 606
Score = 194 bits (492), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 139/460 (30%), Positives = 220/460 (47%), Gaps = 77/460 (16%)
Query: 13 PWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFER-- 70
P SP D F D L + L+ MG + F VQ++V + ++
Sbjct: 160 PQYASPSDKKAFTDFKLSSFMIKN------LEKMGFTEAFSVQISVLNMMLPEIEAQKLK 213
Query: 71 -----DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125
D+ +N+ TGSGKTL+Y++PI+++L R V +R ++++PT+ L QVK ++
Sbjct: 214 PDRVGDILVNASTGSGKTLAYSIPIIESLYRRVVPRVRVIILVPTKPLINQVKSTLLQLS 273
Query: 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD 185
L + SI DE L K S DI+V+TPGRL++
Sbjct: 274 SGTNLQIAALKNDVSINDEKDSLTK--------------------SVPDIIVSTPGRLVE 313
Query: 186 HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFG 245
H+ L L YL++DE DRLL +++Q W +L S
Sbjct: 314 HL-LNDSINLSSLQYLIIDEADRLLNQSFQNWSNVLLDKIDSQ----------------I 356
Query: 246 SLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR----- 300
++ + + V+ K+V SATLT D KL+ L ++P + +++
Sbjct: 357 NIAEVWKLSVQ------------KLVFSATLTTDAGKLSSLKFYNPRLIIVNDSKQLVNE 404
Query: 301 -YKLPERLESYKL---ICESKLKPLYLVALLQSLGE-EKCIVFTSSVESTHRLCTLL-NH 354
+ +P L +K+ + ++ LKPL L L S + ++FT S ES+ RL LL +
Sbjct: 405 IFTVPVTLSEFKIHLGVAKNSLKPLILTKFLISTNKLSNVLIFTKSNESSIRLTELLISL 464
Query: 355 FGELRIKIKE---YSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD 411
F +L I +K S R S+RSK LK F ++ +L+++D + RG+DV + +V+NYD
Sbjct: 465 FQKLSINLKIAFINSTNNRTSIRSKILKQFSNQEVNILITTDLIARGIDVASITDVINYD 524
Query: 412 KPAYIKTYIHRAGRTARAGQLGRCFTL-LHKDEVKRFKKL 450
P + Y+HR GRTARA Q+G ++ K E F KL
Sbjct: 525 LPNSSREYVHRVGRTARANQVGYAYSFCFGKGENSWFNKL 564
>sp|Q6FST5|DBP6_CANGA ATP-dependent RNA helicase DBP6 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=DBP6 PE=3 SV=1
Length = 651
Score = 191 bits (486), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 138/430 (32%), Positives = 219/430 (50%), Gaps = 76/430 (17%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETI---------GPGLFER---DLCINSPTGSGK 82
L P+L ++ S FP+Q A+ + + F R D+ +N+ TGSGK
Sbjct: 200 LTPKLLNNIEKYFSKSTFPIQTAMLDQYLKLINFTLKTSKKNFTRRIGDILVNASTGSGK 259
Query: 83 TLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIA 142
TL+Y++PI+QTLS+R V LR L++LPT+ L QV + +A L + ++ ++S
Sbjct: 260 TLAYSIPIIQTLSSRTVNKLRVLIILPTKLLINQVFQTMSQLAEGTSLVITVSKLENSFN 319
Query: 143 DEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLV 202
+E L+K + DI + TPGRL+DH+ +L +L +LV
Sbjct: 320 EEHKRLLK--------------------TEPDIFITTPGRLVDHL-TNSSISLRNLKFLV 358
Query: 203 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDK 262
+DE DRLL +++Q W+P V+ +SD ++ +P +
Sbjct: 359 LDEADRLLNQSFQNWIPEVMSKFKSDKFDQ-------MPGS------------------- 392
Query: 263 PYPRLVKMVLSATLTQDPNKLAQLDLHHP-LFLTTGETRYKLPERLESYKL---ICESKL 318
++KMV SATLT + KL L L++P LF T Y LP L+ Y+L +S
Sbjct: 393 ----IIKMVFSATLTTNTEKLNDLQLYNPTLFATDSVKLYNLPPTLQEYQLQIPSAKSVY 448
Query: 319 KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN-----HFGELRIKIKEYSGLQRQSV 373
KPLYL+ LL+ L K +VF S ES+ +L LL H L+I + + ++
Sbjct: 449 KPLYLLKLLEQLSGGKTLVFVRSNESSLKLEVLLKSLIKGHMTTLQIVVHSINSNNSKAE 508
Query: 374 RSKTLKAFRE----GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA 429
+ + F + + VL+++D M+RG+D+E + NV+NYD P + Y+HR GRTARA
Sbjct: 509 NRRLVTDFTKESLPNQTNVLITTDLMSRGIDIENIANVINYDVPISSQQYVHRCGRTARA 568
Query: 430 GQLGRCFTLL 439
+ G+ + +L
Sbjct: 569 NKDGKAYNML 578
>sp|P53734|DBP6_YEAST ATP-dependent RNA helicase DBP6 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=DBP6 PE=1 SV=1
Length = 629
Score = 187 bits (476), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 142/472 (30%), Positives = 227/472 (48%), Gaps = 94/472 (19%)
Query: 49 SSLFPVQVAVWQETIGPGL----------FER---DLCINSPTGSGKTLSYALPIVQTLS 95
++ FP+Q ++ ++I P L F R D+ +N+ TGSGKTL+Y++PIVQTL
Sbjct: 195 TNTFPIQ-SIILDSILPVLNFTLNVSKRNFTRRIGDILVNAATGSGKTLAYSIPIVQTLF 253
Query: 96 NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLE 155
R + LR ++++PT+ L QV + L V +A ++S+ DE +L LE
Sbjct: 254 KRQINRLRCIIIVPTKLLINQVYTTLTKLTQGTSLIVSIAKLENSLKDEHKKL---SNLE 310
Query: 156 AGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 215
DIL+ TPGRL+DH+N + L++L +L++DE DRLL +++Q
Sbjct: 311 P-----------------DILITTPGRLVDHLNM-KSINLKNLKFLIIDEADRLLNQSFQ 352
Query: 216 AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSAT 275
W P ++ ++D + LP ++KM+ SAT
Sbjct: 353 GWCPKLMSHLKTDKLDT-------LPG-----------------------NVIKMIFSAT 382
Query: 276 LTQDPNKLAQLDLHHP-LFLTTGETRYKLPERLESYKL---ICESKLKPLYLV-ALLQSL 330
LT + KL L+L+ P LFL + Y+LP +L + + +S KPL L+ ++ Q +
Sbjct: 383 LTTNTEKLNGLNLYKPKLFLKQTDKLYQLPNKLNEFNINIPTAKSVYKPLILLYSICQFM 442
Query: 331 GEE----KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQR-------------QSV 373
K ++F S ES+ RL LL E R + LQ ++
Sbjct: 443 AHSPIAAKILIFVKSNESSIRLSKLLQLICESRSQSSVLKNLQNLAVSINSVNSNNSKAE 502
Query: 374 RSKTLKAF----REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA 429
K + F I +L+++D M+RG+D+ + V+NYD P + Y+HR GRTARA
Sbjct: 503 NKKIVANFSHHSESAGITILITTDIMSRGIDINDITQVINYDPPMSSQQYVHRVGRTARA 562
Query: 430 GQLGRCFTLL-HKDEVKRFKKLLQKADNDSCPIH--SIPSSLIESLRPVYKS 478
+LG + LL + E F L + D D + + +L+ES +Y S
Sbjct: 563 NELGSAYNLLVGRGERTFFDDLNKDLDRDGKSVQPLELDFTLLESDSELYTS 614
>sp|A6ZSB3|DBP6_YEAS7 ATP-dependent RNA helicase DBP6 OS=Saccharomyces cerevisiae (strain
YJM789) GN=DBP6 PE=3 SV=1
Length = 629
Score = 187 bits (474), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 142/472 (30%), Positives = 227/472 (48%), Gaps = 94/472 (19%)
Query: 49 SSLFPVQVAVWQETIGPGL----------FER---DLCINSPTGSGKTLSYALPIVQTLS 95
++ FP+Q ++ ++I P L F R D+ +N+ TGSGKTL+Y++PIVQTL
Sbjct: 195 TNTFPIQ-SIILDSILPVLNFTLNVSKRNFTRRIGDILVNAATGSGKTLAYSIPIVQTLF 253
Query: 96 NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLE 155
R + LR ++++PT+ L QV + L V +A ++S+ DE +L LE
Sbjct: 254 KRQINRLRCIIIVPTKLLINQVYTTLTKLTQGTSLIVSIAKLENSLKDEHKKL---SNLE 310
Query: 156 AGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 215
DIL+ TPGRL+DH+N + L++L +L++DE DRLL +++Q
Sbjct: 311 P-----------------DILITTPGRLVDHLNM-KSINLKNLKFLIIDEADRLLNQSFQ 352
Query: 216 AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSAT 275
W P ++ ++D + LP ++KM+ SAT
Sbjct: 353 GWCPKLMSHLKTDKLDT-------LPG-----------------------NVIKMIFSAT 382
Query: 276 LTQDPNKLAQLDLHHP-LFLTTGETRYKLPERLESYKL---ICESKLKPLYLV-ALLQSL 330
LT + KL L+L+ P LFL + Y+LP +L + + +S KPL L+ ++ Q +
Sbjct: 383 LTTNTEKLNGLNLYKPKLFLKQTDKLYQLPNKLNEFNINIPTAKSIYKPLILLYSICQFM 442
Query: 331 GEE----KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQR-------------QSV 373
K ++F S ES+ RL LL E R + LQ ++
Sbjct: 443 AHSPIAAKILIFVKSNESSIRLSKLLQLICESRSQSSVLKNLQNLAVSINSVNSNNSKAE 502
Query: 374 RSKTLKAF----REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA 429
K + F I +L+++D M+RG+D+ + V+NYD P + Y+HR GRTARA
Sbjct: 503 NKKIVANFSHPSESAGITILITTDIMSRGIDINDITQVINYDPPMSSQQYVHRVGRTARA 562
Query: 430 GQLGRCFTLL-HKDEVKRFKKLLQKADNDSCPIH--SIPSSLIESLRPVYKS 478
+LG + LL + E F L + D D + + +L+ES +Y S
Sbjct: 563 NELGSAYNLLVGRGERTFFDDLNKDLDRDGKSVQPLELDFTLLESDSELYTS 614
>sp|Q6CKZ4|DBP6_KLULA ATP-dependent RNA helicase DBP6 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=DBP6 PE=3 SV=1
Length = 630
Score = 187 bits (474), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 135/436 (30%), Positives = 217/436 (49%), Gaps = 83/436 (19%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETI---------GPGLFER---DLCINSPTGSGK 82
LD RL + + S FP+Q ++ + + LF R D+ +N+ TGSGK
Sbjct: 182 LDARLLKNITSNFSSETFPIQTILFDKVLPLLNSSFKANRKLFTRRVGDILVNASTGSGK 241
Query: 83 TLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIA 142
TL+Y++P+VQ L +R V +RA++++PT+ L QV D + ++ L+V ++ ++S+
Sbjct: 242 TLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQGTSLNVSMSKLENSLK 301
Query: 143 DEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLV 202
+E ++ L ++ DIL+ TPGRL+DH+ F L+ L +LV
Sbjct: 302 EEHNKF--------------------LYNSPDILIITPGRLVDHLQM-ESFDLKTLKFLV 340
Query: 203 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDK 262
+DE DRLL +++Q W + +D ++ +R G
Sbjct: 341 LDEADRLLNQSFQNWNQVLFHHLTNDKQD-------------------KRPG-------- 373
Query: 263 PYPRLVKMVLSATLTQDPNKLAQLDLHHP-LFLTTGETRYKLPERLESYKL---ICESKL 318
++KMV SATLT + KL L LH+P +FLT Y +P++L+ + +S
Sbjct: 374 ---NVIKMVFSATLTTNAEKLYNLYLHNPKIFLTDSVKLYSIPKKLQELNVNIPTAKSLF 430
Query: 319 KPLYLVALLQSLGEE-----KCIVFTSSVESTHRLCTLLNHFGELRIKIKEY-------- 365
KPL L+ ++ + K +VF S E++ RL +LL+ I EY
Sbjct: 431 KPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRLESLLHAMLGSGIIEDEYNMFLSSIH 490
Query: 366 SGLQRQSVRSKTLKAF--REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRA 423
S + + S R K ++ F E K VL+S+D M RG+D+ + +V+NYD P + Y+HR
Sbjct: 491 SNISKGSSR-KLIQEFASSEQKKSVLISTDIMARGIDINEITHVINYDLPISSQQYVHRC 549
Query: 424 GRTARAGQLGRCFTLL 439
GRTARA G LL
Sbjct: 550 GRTARANTEGIAINLL 565
>sp|Q6CDN5|DBP6_YARLI ATP-dependent RNA helicase DBP6 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=DBP6 PE=3 SV=1
Length = 607
Score = 183 bits (464), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 140/459 (30%), Positives = 223/459 (48%), Gaps = 62/459 (13%)
Query: 4 AKKKSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAV--W-- 59
++K + P +R+ V + + D L + L +G + F VQ AV W
Sbjct: 165 SRKTQLQTQPILRNATYVEIDDVGSFDEFD-LSKNMMKNLDTLGYTKAFSVQKAVIPWLL 223
Query: 60 --QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117
Q+ + P + DL +++ TGSGKT +Y +PI++ L +R V +RA+VVLPT+ L +QV
Sbjct: 224 AQQKLLAPDR-KPDLLVSASTGSGKTATYGIPIIEKLRDRIVPRIRAVVVLPTKPLVMQV 282
Query: 118 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177
+DV ++ LSV ++ ++ S +R LE DI+V
Sbjct: 283 RDVLENLSKGSSLSV------VALRNDRSTKRERAVLETA----------------DIVV 320
Query: 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 237
A PGRL++ + ++ +LVVDE DRLL + Y W +VLQ +N+ R
Sbjct: 321 AAPGRLVEQVKENPEL-FSYIEFLVVDEADRLLGQDYYDW-ASVLQ----NNQQRAQAGK 374
Query: 238 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP-LFLTT 296
T L + +R + ++ SATLT +P +A +D+H+P +F+
Sbjct: 375 TNLTEHY-----VR--------------NMQTLIFSATLTANPEHIASMDIHNPGVFVIG 415
Query: 297 GETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN--- 353
Y +P+ L + KPL L LL + +VFT S E+ R+ ++
Sbjct: 416 SSDSYSIPKSLTEIVTHVSAAEKPLMLCELLVQRDINRGVVFTKSSETAARVARMMEIMD 475
Query: 354 -HFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 412
KI S R +++K F +GKI LV +D ++RG+D V+NV+NYD
Sbjct: 476 ADIFHKDWKIAAVSAETSSVHRRRSMKQFIDGKIDFLVCTDLVSRGIDF-VVDNVINYDI 534
Query: 413 PAYIKTYIHRAGRTARAGQLGRCFTLLH-KDEVKRFKKL 450
P+ + Y+HR GRTARAG+ G +T L E K F+++
Sbjct: 535 PSGKREYVHRVGRTARAGREGNAYTFLTGSGEAKWFREI 573
>sp|Q9CWX9|DDX47_MOUSE Probable ATP-dependent RNA helicase DDX47 OS=Mus musculus GN=Ddx47
PE=2 SV=2
Length = 455
Score = 183 bits (464), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 125/398 (31%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 47 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 103
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 104 LAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPH------------------- 144
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 145 --IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 200
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
TFL SAT+T+ KL + L +P+
Sbjct: 201 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 224
Query: 293 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352
++Y+ E+L+ Y L SK K YLV +L L ++F S+ +T R LL
Sbjct: 225 KCAVS-SKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 283
Query: 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 412
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 284 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 340
Query: 413 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 341 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>sp|Q29S22|DDX47_BOVIN Probable ATP-dependent RNA helicase DDX47 OS=Bos taurus GN=DDX47
PE=2 SV=1
Length = 457
Score = 182 bits (463), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 125/398 (31%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 49 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 105
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 106 LAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPH------------------- 146
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 147 --IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 202
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
TFL SAT+T+ KL + L +P+
Sbjct: 203 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 226
Query: 293 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352
++Y+ E+L+ Y L SK K YLV +L L ++F S+ +T R LL
Sbjct: 227 KCAVS-SKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 285
Query: 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 412
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 286 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 342
Query: 413 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 343 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 380
>sp|Q751D1|DBP6_ASHGO ATP-dependent RNA helicase DBP6 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=DBP6
PE=3 SV=1
Length = 607
Score = 182 bits (462), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 130/413 (31%), Positives = 207/413 (50%), Gaps = 76/413 (18%)
Query: 52 FPVQVAVWQE---------TIGPGLFER---DLCINSPTGSGKTLSYALPIVQTLSNRAV 99
FP+Q A+ ++ + R D+ +N+ TGSGKTL+YA+ ++ LS R V
Sbjct: 185 FPIQTALLDSVLPLMSQAYSVSKRYYTRKVGDILVNASTGSGKTLAYAMLLIHILSRRTV 244
Query: 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 159
LRA++++PT+ L QV D A+A + V ++ +S+ +E ++L +
Sbjct: 245 NKLRAVILVPTKLLVHQVYDTVQALAKGSSVVVAVSKMDTSLKEESAKLKAQ-------- 296
Query: 160 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 219
+P D+L+ TPGRL+DH+N + F+L++L +LV+DE DRLL +++Q W
Sbjct: 297 -EP-----------DVLIITPGRLVDHLN-MQTFSLKNLKFLVLDEADRLLNQSFQNWC- 342
Query: 220 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 279
++ + R ER FK ++KM+ SATLT +
Sbjct: 343 ---------------------------IELMTRLNAERPFKGP--GNVIKMIFSATLTTN 373
Query: 280 PNKLAQLDLHHPLFLTTGETRYKLPERLESYKL---ICESKLKPLYLVALLQSLGEE--K 334
+L L LH+P G Y +P +L+ Y L +S KPL L+ LL L E +
Sbjct: 374 TERLHDLQLHNPKLFLMGSQLYHMPAQLQEYNLPIPTSKSYAKPLILLRLLPLLSTESLR 433
Query: 335 CIVFTSSVESTHRLCTLL-----NHFGELRIKIKEYSGLQRQSVRSKTLKAF---REGKI 386
+VF S E++ RL LL N + + + ++ K ++AF G
Sbjct: 434 ILVFVKSNEASIRLAALLTAMVGNGLSAVSTTVGSINNNNSKATNRKLIEAFAAGASGHC 493
Query: 387 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439
+LVS+D M+RG+D+ G+++V+NYD P + Y+HR GRTARA G LL
Sbjct: 494 SILVSTDLMSRGLDISGISHVINYDLPISSQQYVHRCGRTARANTSGTAVNLL 546
>sp|Q1E1N5|RRP3_COCIM ATP-dependent rRNA helicase RRP3 OS=Coccidioides immitis (strain
RS) GN=RRP3 PE=3 SV=1
Length = 474
Score = 182 bits (461), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 130/398 (32%), Positives = 193/398 (48%), Gaps = 65/398 (16%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P Q+ E+I L RDL + TGSGKT ++ALPI+Q L ++ + + LV+ PTR+
Sbjct: 71 PTQIQA--ESIPLALQGRDLIGLAETGSGKTAAFALPILQALMDKP-QSMFGLVLAPTRE 127
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA Q+ F A+ + + + VG + + L K+P
Sbjct: 128 LAYQISQQFEALGSLISVRCAVIVGGMDMVSQAIALGKKPH------------------- 168
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
I+VATPGRL+DH+ T+GF+L L YLV+DE DRLL + L +L++
Sbjct: 169 --IIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKV-------- 218
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
LP RR + SAT++ L + L +PL
Sbjct: 219 -------LPKE-------RRT----------------YLFSATMSSKVESLQRASLSNPL 248
Query: 293 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352
++ +Y+ L LI K K +YL+ LL + I+FT +V T RL LL
Sbjct: 249 RVSVSSNKYQTVSTLLQNCLIIPHKHKDIYLIYLLNEFPGQSVIIFTRTVNETQRLAILL 308
Query: 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 412
G I + G QS R L FR +LV++D RG+D+ V+ V+NYD
Sbjct: 309 RALGFGAIPLH---GQLSQSARLGALGKFRSRSRNILVATDVAARGLDIPSVDLVLNYDL 365
Query: 413 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
P+ KTYIHR GRTARAG+ GR F+L+ + +V+ ++++
Sbjct: 366 PSDSKTYIHRVGRTARAGKSGRAFSLVTQYDVEIWQRI 403
>sp|Q9H0S4|DDX47_HUMAN Probable ATP-dependent RNA helicase DDX47 OS=Homo sapiens GN=DDX47
PE=1 SV=1
Length = 455
Score = 182 bits (461), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 124/398 (31%), Positives = 196/398 (49%), Gaps = 66/398 (16%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 47 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 103
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 104 LAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH------------------- 144
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 145 --IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 200
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
TFL SAT+T+ KL + L +P+
Sbjct: 201 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 224
Query: 293 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352
++Y+ E+L+ Y + SK K YLV +L L ++F S+ +T R LL
Sbjct: 225 KCAVS-SKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 283
Query: 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 412
+ G I + G QS R +L F+ +L+++D +RG+D+ V+ VVN+D
Sbjct: 284 RNLGFTAIPL---HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 340
Query: 413 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
P + K YIHR GRTARAG+ G+ T + + +V+ F+++
Sbjct: 341 PTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>sp|Q7RY59|RRP3_NEUCR ATP-dependent rRNA helicase rrp-3 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=rrp-3 PE=3 SV=1
Length = 515
Score = 175 bits (444), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 125/398 (31%), Positives = 188/398 (47%), Gaps = 67/398 (16%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101
A + +G + P+Q +++I L RD+ + TGSGKT ++ALPI+Q L ++
Sbjct: 104 ACERLGYKNPTPIQ----EQSIPLALQNRDIIGIAETGSGKTAAFALPILQALLDKPA-P 158
Query: 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD 161
L ALV+ PTR+LA Q+ F A+ + L L +G + + L K+P
Sbjct: 159 LFALVLAPTRELAAQIAQAFEALGSLISLRCALILGGMDMVTQAIALGKKPH-------- 210
Query: 162 PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 221
++VATPGRL+DH+ T+GF+L + YLV+DE DRLL + L +
Sbjct: 211 -------------VIVATPGRLLDHLEKTKGFSLRSMQYLVMDEADRLLDMDFGPILEKI 257
Query: 222 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 281
L+ FLP RR + SAT++
Sbjct: 258 LK---------------FLPRE-------RRT----------------FLFSATMSSKVE 279
Query: 282 KLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 341
L + L PL ++ +Y L+S + K YLV L + I+FT +
Sbjct: 280 SLQRASLRDPLKVSVSSNKYATVSTLKSNYVFIPHMHKDTYLVYLCNEFAGQTIIIFTRT 339
Query: 342 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 401
V T R+ LL G I + + GL QS R L FR G ++LV++D RG+D+
Sbjct: 340 VLETQRIAILLRTLGMGAIPL--HGGLS-QSARLGALNKFRAGSREILVATDVAARGLDI 396
Query: 402 EGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439
V+ V+N+D P KTY+HR GRTARAG+ G +++
Sbjct: 397 PNVDCVINHDLPQDSKTYVHRVGRTARAGKSGHAISIV 434
>sp|P38712|RRP3_YEAST ATP-dependent rRNA helicase RRP3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RRP3 PE=1 SV=2
Length = 501
Score = 172 bits (435), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 130/452 (28%), Positives = 210/452 (46%), Gaps = 74/452 (16%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P L A +N+ S P+Q + I P L D+ + TGSGKT ++A+PI+ L
Sbjct: 88 LVPELIQACKNLNYSKPTPIQ----SKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRL 143
Query: 95 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
+ A ++ PTR+LA Q+K+ F ++ +G+ VG ++ D+ +L+++P
Sbjct: 144 WHDQ-EPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPH- 201
Query: 155 EAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY 214
I++ATPGRLMDH+ T+GF+L L +LV+DE DRLL +
Sbjct: 202 --------------------IIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEF 241
Query: 215 QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274
L +L++ P + SA
Sbjct: 242 GPVLDRILKII-------------------------------------PTQERTTYLFSA 264
Query: 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEK 334
T+T +KL + L +P+ +Y+ + L ++ LK YL+ LL +
Sbjct: 265 TMTSKIDKLQRASLTNPVKCAVS-NKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFIGKT 323
Query: 335 CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394
I+FT + + RL L N L G Q+ R +L F+ GK +LV++D
Sbjct: 324 MIIFTRTKANAERLSGLCNL---LEFSATALHGDLNQNQRMGSLDLFKAGKRSILVATDV 380
Query: 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK---RFKKLL 451
RG+D+ V+ VVNYD P K+YIHR GRTARAG+ G+ +L+ + +++ R +++L
Sbjct: 381 AARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEEVL 440
Query: 452 QKADNDSCPIHSIPSSLIESLRPVYKSVRGGI 483
K P S+ ++I +LR G +
Sbjct: 441 GK----KLPKESVDKNIILTLRDSVDKANGEV 468
>sp|A6ZSX1|RRP3_YEAS7 ATP-dependent rRNA helicase RRP3 OS=Saccharomyces cerevisiae
(strain YJM789) GN=RRP3 PE=3 SV=1
Length = 501
Score = 171 bits (434), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 130/452 (28%), Positives = 209/452 (46%), Gaps = 74/452 (16%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P L A +N+ S P+Q + I P L D+ + TGSGKT ++A+PI+ L
Sbjct: 88 LVPELIQACKNLNYSKPTPIQ----SKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRL 143
Query: 95 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
+ A ++ PTR+LA Q+K+ F ++ +G+ VG ++ D+ +L+++P
Sbjct: 144 WHDQ-EPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPH- 201
Query: 155 EAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY 214
I++ATPGRLMDH+ T+GF+L L +LV+DE DRLL +
Sbjct: 202 --------------------IIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEF 241
Query: 215 QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274
L +L++ P + SA
Sbjct: 242 GPVLDRILKII-------------------------------------PTQERTTYLFSA 264
Query: 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEK 334
T+T +KL + L +P+ +Y+ + L ++ LK YL+ LL +
Sbjct: 265 TMTSKIDKLQRASLTNPVKCAVS-NKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFIGKT 323
Query: 335 CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394
I+FT + + RL L N L G Q+ R L F+ GK +LV++D
Sbjct: 324 MIIFTRTKANAERLSGLCNL---LEFSATALHGDLNQNQRMGALDLFKAGKRSILVATDV 380
Query: 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK---RFKKLL 451
RG+D+ V+ VVNYD P K+YIHR GRTARAG+ G+ +L+ + +++ R +++L
Sbjct: 381 AARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEEVL 440
Query: 452 QKADNDSCPIHSIPSSLIESLRPVYKSVRGGI 483
K P S+ ++I +LR G +
Sbjct: 441 GK----KLPKESVDKNIILTLRDSVDKANGEV 468
>sp|P0CQ92|DRS1_CRYNJ ATP-dependent RNA helicase DRS1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=DRS1 PE=3 SV=1
Length = 808
Score = 171 bits (434), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 130/449 (28%), Positives = 207/449 (46%), Gaps = 70/449 (15%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR---- 97
AL ++ ++ P+Q I L RD+ ++ TGSGKT ++ +PI++ L R
Sbjct: 236 ALTSLQFTAPTPIQA----RAIPLALLGRDILGSAVTGSGKTAAFMVPILERLCYRDRGK 291
Query: 98 -AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 156
C R LV+ PTR+LA+Q + V A+A GL V A+ L
Sbjct: 292 GGAAC-RVLVLCPTRELAVQCEAVGKALAEKGGLDVRFAL-----------------LVG 333
Query: 157 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 216
G+ + + L++ DIL+ATPGRL+DH+ T FTL L LV+DE DR+L +
Sbjct: 334 GLSLNAQ--AHTLRTLPDILIATPGRLIDHLTNTPSFTLSALDVLVIDEADRMLEAGFTD 391
Query: 217 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 276
L + I+ C P R M+ SAT+
Sbjct: 392 ELEEI----------------------------IKAC---------PRSRQT-MLFSATM 413
Query: 277 TQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCI 336
T ++L +L L P+ + R + + I + L+AL + EKCI
Sbjct: 414 TDSVDELVKLSLDKPIRVFVDPKRNTARGLTQEFVRIRSDDSRSPSLLALCKRTIREKCI 473
Query: 337 VFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT 396
+F S H++ + FG +K E G Q R + L F+ G + L+++D +
Sbjct: 474 IFFRSKALAHQMRIVFGLFG---LKAAELHGNLTQEQRLQALNDFKAGTVDYLLATDLAS 530
Query: 397 RGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 456
RG+D++GV V+NYD P + Y HR GRTARAG+ GR +L+ + + K K +++A+
Sbjct: 531 RGLDIKGVETVINYDMPGQLAQYTHRVGRTARAGRKGRSVSLVGEADRKMLKAAIKQAEA 590
Query: 457 DSCPIHSIPSSLIESLRPVYKSVRGGISD 485
D IPS + +++ + + I +
Sbjct: 591 DQVRHRIIPSEAVTAMKEKLEEFKDDIQE 619
>sp|P0CQ93|DRS1_CRYNB ATP-dependent RNA helicase DRS1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=DRS1 PE=3 SV=1
Length = 808
Score = 171 bits (434), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 130/449 (28%), Positives = 207/449 (46%), Gaps = 70/449 (15%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR---- 97
AL ++ ++ P+Q I L RD+ ++ TGSGKT ++ +PI++ L R
Sbjct: 236 ALTSLQFTAPTPIQA----RAIPLALLGRDILGSAVTGSGKTAAFMVPILERLCYRDRGK 291
Query: 98 -AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 156
C R LV+ PTR+LA+Q + V A+A GL V A+ L
Sbjct: 292 GGAAC-RVLVLCPTRELAVQCEAVGKALAEKGGLDVRFAL-----------------LVG 333
Query: 157 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 216
G+ + + L++ DIL+ATPGRL+DH+ T FTL L LV+DE DR+L +
Sbjct: 334 GLSLNAQ--AHTLRTLPDILIATPGRLIDHLTNTPSFTLSALDVLVIDEADRMLEAGFTD 391
Query: 217 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 276
L + I+ C P R M+ SAT+
Sbjct: 392 ELEEI----------------------------IKAC---------PRSRQT-MLFSATM 413
Query: 277 TQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCI 336
T ++L +L L P+ + R + + I + L+AL + EKCI
Sbjct: 414 TDSVDELVKLSLDKPIRVFVDPKRNTARGLTQEFVRIRSDDSRSPSLLALCKRTIREKCI 473
Query: 337 VFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT 396
+F S H++ + FG +K E G Q R + L F+ G + L+++D +
Sbjct: 474 IFFRSKALAHQMRIVFGLFG---LKAAELHGNLTQEQRLQALNDFKAGTVDYLLATDLAS 530
Query: 397 RGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 456
RG+D++GV V+NYD P + Y HR GRTARAG+ GR +L+ + + K K +++A+
Sbjct: 531 RGLDIKGVETVINYDMPGQLAQYTHRVGRTARAGRKGRSVSLVGEADRKMLKAAIKQAEA 590
Query: 457 DSCPIHSIPSSLIESLRPVYKSVRGGISD 485
D IPS + +++ + + I +
Sbjct: 591 DQVRHRIIPSEAVTAMKEKLEEFKDDIQE 619
>sp|Q0CIQ3|RRP3_ASPTN ATP-dependent rRNA helicase rrp3 OS=Aspergillus terreus (strain NIH
2624 / FGSC A1156) GN=rrp3 PE=3 SV=2
Length = 445
Score = 168 bits (425), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 126/404 (31%), Positives = 190/404 (47%), Gaps = 69/404 (17%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101
A + +G ++ P+Q + I L RDL + TGSGKT ++ LP++Q L ++ +
Sbjct: 42 ACEELGYTAPTPIQ----ERCIPIALEGRDLIGLAETGSGKTAAFVLPMLQALMDKP-QQ 96
Query: 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD 161
+L++ PTR+LA Q+ A+ + + L +G + + L K+P
Sbjct: 97 FHSLILAPTRELAQQIAHTVEALGARISVRCTLLIGGMDMISQAIALGKKPH-------- 148
Query: 162 PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 221
++VATPGRL+DH+ T+GF+L L YLV+DE DRLL + L +
Sbjct: 149 -------------VIVATPGRLLDHLENTKGFSLRTLKYLVLDEADRLLDLDFGPILDKL 195
Query: 222 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 281
L+L LP K K Y + SAT++
Sbjct: 196 LRL---------------LP------------------KRKTY------LFSATMSSKVE 216
Query: 282 KLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 341
L + L P+ ++ + L+SY L K K YLV LL + I+FT +
Sbjct: 217 SLQRASLSDPVRVSVSTKNQTASKLLQSY-LFIPHKFKDFYLVYLLNERAGQMGIIFTRT 275
Query: 342 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 401
V T RL +L + G I I G QS R +L FR +L+++D RG+D+
Sbjct: 276 VHETQRLSIMLRNLGFPAIPIH---GQLSQSARLASLNKFRARSRNLLIATDVAARGLDI 332
Query: 402 EGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 445
V+ V+NYD P KTYIHR GRTARAG+ G F+ + + EV+
Sbjct: 333 PAVDYVLNYDLPQDSKTYIHRVGRTARAGKSGIAFSFVTQYEVE 376
>sp|Q2UNB7|RRP3_ASPOR ATP-dependent rRNA helicase rrp3 OS=Aspergillus oryzae (strain ATCC
42149 / RIB 40) GN=rrp3 PE=3 SV=1
Length = 472
Score = 168 bits (425), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 121/394 (30%), Positives = 180/394 (45%), Gaps = 63/394 (15%)
Query: 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111
+ A+ E I L RDL + TGSGKT ++ALPI+Q L ++ LV+ PTR
Sbjct: 72 YKAPTAIQAEAIPLALQGRDLIGLAETGSGKTAAFALPILQALMDKPSSFF-GLVLAPTR 130
Query: 112 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 171
+LA Q+ F + + + + VG + + L K+P
Sbjct: 131 ELAYQISQAFEGLGSTISVRSTVLVGGMDMVSQSIALGKKPH------------------ 172
Query: 172 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN 231
I+VATPGRL+DH+ T+GF+L +L YLV+DE DRLL + L +L++
Sbjct: 173 ---IIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDMDFGPILDKILKV------- 222
Query: 232 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 291
LP RR + SAT++ L + L +P
Sbjct: 223 --------LPRE-------RRT----------------YLFSATMSSKVESLQRASLQNP 251
Query: 292 LFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTL 351
L + ++++ L+ + K K LYLV LL + CI+F +V T RL
Sbjct: 252 LRVAVSSSKFQTVSTLQQSYIFIPHKHKDLYLVYLLNEFVGQSCIIFCRTVHETQRLSFF 311
Query: 352 LNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD 411
L G I + G QS R L FR +LV++D RG+D+ V+ V+N+D
Sbjct: 312 LRLLGFGAIPLH---GQLSQSARLGALGKFRSRSRDILVATDVAARGLDIPSVDVVLNFD 368
Query: 412 KPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 445
P KT+IHR GRTARAG+ G + + +V+
Sbjct: 369 LPGDSKTFIHRIGRTARAGKSGVAISFATQYDVE 402
>sp|P0CR00|RRP3_CRYNJ ATP-dependent rRNA helicase RRP3 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=RRP3 PE=3 SV=1
Length = 484
Score = 166 bits (420), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 125/416 (30%), Positives = 197/416 (47%), Gaps = 68/416 (16%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
+ P L A +MG +Q E I L +D+ + TGSGKT +++LPI+QTL
Sbjct: 45 ISPELCRACASMGFKKPSDIQA----EAIPHALEGKDIIGLAQTGSGKTAAFSLPILQTL 100
Query: 95 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
+ ALV+ PTR+LA Q+ ++ +G+ + VG + + L KRP
Sbjct: 101 WENP-QPFFALVLAPTRELAYQISQQVTSLGSGIGVRTAVLVGGMDMMSQSIALSKRPH- 158
Query: 155 EAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY 214
I+VATPGRLMDH+ T+GF+L+ L YLV+DE DRLL +
Sbjct: 159 --------------------IIVATPGRLMDHLENTKGFSLKSLKYLVMDEADRLLDLDF 198
Query: 215 QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274
+ +L++ + +T+L SA
Sbjct: 199 GPIIDKILKVIPKER-------NTYL-------------------------------FSA 220
Query: 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEK 334
T+T KL + L+ P+ + ++Y L + L+ K K YL+ L L
Sbjct: 221 TMTTKVAKLQRASLNKPVRVEV-SSKYSTVSTLLQHYLLLPLKNKDAYLLYLANELSSSS 279
Query: 335 CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394
++FT +V + RL +L G I + G QS+R +L F+ G +LV++D
Sbjct: 280 MMIFTRTVADSQRLSIILRRLGFPAIPLH---GQMTQSLRLASLNKFKSGGRSILVATDV 336
Query: 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
+RG+D+ V+ V+NYD P K Y+HR GRTARAG+ G+ TL+ + +V+ +++
Sbjct: 337 ASRGLDIPLVDLVINYDMPTNSKDYVHRVGRTARAGRSGKSITLVTQYDVEILQRI 392
>sp|P0CR01|RRP3_CRYNB ATP-dependent rRNA helicase RRP3 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=RRP3 PE=3 SV=1
Length = 484
Score = 166 bits (420), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 125/416 (30%), Positives = 197/416 (47%), Gaps = 68/416 (16%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
+ P L A +MG +Q E I L +D+ + TGSGKT +++LPI+QTL
Sbjct: 45 ISPELCRACASMGFKKPSDIQA----EAIPHALEGKDIIGLAQTGSGKTAAFSLPILQTL 100
Query: 95 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
+ ALV+ PTR+LA Q+ ++ +G+ + VG + + L KRP
Sbjct: 101 WENP-QPFFALVLAPTRELAYQISQQVTSLGSGIGVRTAVLVGGMDMMSQSIALSKRPH- 158
Query: 155 EAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY 214
I+VATPGRLMDH+ T+GF+L+ L YLV+DE DRLL +
Sbjct: 159 --------------------IIVATPGRLMDHLENTKGFSLKSLKYLVMDEADRLLDLDF 198
Query: 215 QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274
+ +L++ + +T+L SA
Sbjct: 199 GPIIDKILKVIPKER-------NTYL-------------------------------FSA 220
Query: 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEK 334
T+T KL + L+ P+ + ++Y L + L+ K K YL+ L L
Sbjct: 221 TMTTKVAKLQRASLNKPVRVEV-SSKYSTVSTLLQHYLLLPLKNKDAYLLYLANELSSSS 279
Query: 335 CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394
++FT +V + RL +L G I + G QS+R +L F+ G +LV++D
Sbjct: 280 MMIFTRTVADSQRLSIILRRLGFPAIPLH---GQMTQSLRLASLNKFKSGGRSILVATDV 336
Query: 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450
+RG+D+ V+ V+NYD P K Y+HR GRTARAG+ G+ TL+ + +V+ +++
Sbjct: 337 ASRGLDIPLVDLVINYDMPTNSKDYVHRVGRTARAGRSGKSITLVTQYDVEILQRI 392
>sp|P32892|DRS1_YEAST ATP-dependent RNA helicase DRS1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=DRS1 PE=1 SV=2
Length = 752
Score = 165 bits (418), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 124/416 (29%), Positives = 195/416 (46%), Gaps = 86/416 (20%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96
P LK L ++G P+Q A TI L +D+ + TGSGKT ++ +PI++ L
Sbjct: 241 PVLK-GLASLGYVKPSPIQSA----TIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLY 295
Query: 97 RAVR--CLRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPK 153
+ + R +V+LPTR+LA+QV DV IA V G++ GLAVG ++ + L RP
Sbjct: 296 KPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSRP- 354
Query: 154 LEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA 213
DI++ATPGR +DHI + F ++ + LV+DE DR+L E
Sbjct: 355 --------------------DIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEG 394
Query: 214 YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273
+Q L ++ L S+ +N ++ S
Sbjct: 395 FQDELNEIMGLLPSNRQN--------------------------------------LLFS 416
Query: 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE-------SKLKPLYLVAL 326
AT+ L L L P+ + P + + KL E LKP L L
Sbjct: 417 ATMNSKIKSLVSLSLKKPVRIMID------PPKKAATKLTQEFVRIRKRDHLKPALLFNL 470
Query: 327 LQSL---GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 383
++ L G+++ +VF + E+ HRL ++ G L + + E G Q R ++ F+
Sbjct: 471 IRKLDPTGQKRIVVFVARKETAHRLRIIM---GLLGMSVGELHGSLTQEQRLDSVNKFKN 527
Query: 384 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439
++ VL+ +D +RG+D+ + V+NYD P + Y+HR GRTARAG+ GR T +
Sbjct: 528 LEVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFV 583
>sp|A7A0P8|DRS1_YEAS7 ATP-dependent RNA helicase DRS1 OS=Saccharomyces cerevisiae (strain
YJM789) GN=DRS1 PE=3 SV=1
Length = 754
Score = 165 bits (418), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 124/416 (29%), Positives = 195/416 (46%), Gaps = 86/416 (20%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96
P LK L ++G P+Q A TI L +D+ + TGSGKT ++ +PI++ L
Sbjct: 243 PVLK-GLASLGYVKPSPIQSA----TIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLY 297
Query: 97 RAVR--CLRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPK 153
+ + R +V+LPTR+LA+QV DV IA V G++ GLAVG ++ + L RP
Sbjct: 298 KPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSRP- 356
Query: 154 LEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA 213
DI++ATPGR +DHI + F ++ + LV+DE DR+L E
Sbjct: 357 --------------------DIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEG 396
Query: 214 YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273
+Q L ++ L S+ +N ++ S
Sbjct: 397 FQDELNEIMGLLPSNRQN--------------------------------------LLFS 418
Query: 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE-------SKLKPLYLVAL 326
AT+ L L L P+ + P + + KL E LKP L L
Sbjct: 419 ATMNSKIKSLVSLSLKKPVRIMID------PPKKAATKLTQEFVRIRKRDHLKPALLFNL 472
Query: 327 LQSL---GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 383
++ L G+++ +VF + E+ HRL ++ G L + + E G Q R ++ F+
Sbjct: 473 IRKLDPTGQKRIVVFVARKETAHRLRIIM---GLLGMSVGELHGSLTQEQRLDSVNKFKN 529
Query: 384 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439
++ VL+ +D +RG+D+ + V+NYD P + Y+HR GRTARAG+ GR T +
Sbjct: 530 LEVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFV 585
>sp|A4RGD1|RRP3_MAGO7 ATP-dependent rRNA helicase RRP3 OS=Magnaporthe oryzae (strain
70-15 / ATCC MYA-4617 / FGSC 8958) GN=RRP3 PE=3 SV=1
Length = 538
Score = 164 bits (415), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 120/390 (30%), Positives = 181/390 (46%), Gaps = 67/390 (17%)
Query: 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111
F + ++ I L RD+ + TGSGKT ++ALPI+Q+L + + L LV+ PTR
Sbjct: 130 FKKPTPIQEQAIPLALQGRDVIGIAETGSGKTAAFALPILQSLLEKP-QPLFGLVLAPTR 188
Query: 112 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 171
+LA Q+ F A+ ++ L + VG + + + L K+P
Sbjct: 189 ELAAQIGQTFEALGASISLRCAVVVGGLDMVSQSTALGKKPH------------------ 230
Query: 172 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN 231
I+VATPGRL+DH+ T+GF+L L +LV+DE DRLL + L +L+
Sbjct: 231 ---IVVATPGRLLDHLEKTKGFSLRSLKFLVMDEADRLLDLDFGPILDKILK-------- 279
Query: 232 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 291
FLP RR + SAT++ L + L P
Sbjct: 280 -------FLPRE-------RRT----------------FLFSATMSSKVESLQRASLRDP 309
Query: 292 LFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTL 351
L ++ ++ K L L K K +YL+ L + IVFT +V R+ L
Sbjct: 310 LKVSVSSSQEKTVSTLIQNPLFIPHKHKDVYLIYLANEFAGKTTIVFTRTVNEAQRVSIL 369
Query: 352 LN--HFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN 409
L FG + + G QS+R L F+ +LV++D RG+D+ V+ V+N
Sbjct: 370 LRTLSFGAIPL-----HGQLSQSMRLGALNKFKARSRDILVATDVAARGLDIPEVDLVIN 424
Query: 410 YDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439
+D P TYIHR GRTARAG+ GR +++
Sbjct: 425 FDMPQDSMTYIHRVGRTARAGRSGRAISII 454
>sp|Q0V1Z7|DRS1_PHANO ATP-dependent RNA helicase DRS1 OS=Phaeosphaeria nodorum (strain
SN15 / ATCC MYA-4574 / FGSC 10173) GN=DRS1 PE=3 SV=1
Length = 808
Score = 156 bits (394), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 113/437 (25%), Positives = 205/437 (46%), Gaps = 70/437 (16%)
Query: 31 HLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPI 90
H L ++ L +G + P+Q + I + +D+ + TGSGKT ++ +PI
Sbjct: 288 HAMSLSRPIQKGLAAIGFTEPTPIQA----KAIPIAMQGKDVVGGAETGSGKTAAFLIPI 343
Query: 91 VQTLSNR--AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
++ L R V R + +PTR+LA+Q +V +A ++ L G
Sbjct: 344 LERLLYRPKKVPTTRVAIFMPTRELAVQCFNVATKLASFTDITFALLAG----------- 392
Query: 149 IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208
G ++V+ L++ D+++ATPGR +DH++ T F +EHL LV+DE DR
Sbjct: 393 --------GFSSREQEVM--LKTRPDVVIATPGRFIDHMHNTAAFQVEHLEILVLDEADR 442
Query: 209 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLV 268
+L E ++ L +L T +P + +
Sbjct: 443 MLEEGFETQLNEIL---------------TTIPKSRQT---------------------- 465
Query: 269 KMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP--LYLVAL 326
M+ SAT+T +KL ++ + P+ L ++ + + + + + K YL+ +
Sbjct: 466 -MLFSATMTSTVDKLIRIGMDKPVRLMVDAKKHTVKGLTQEFIRLRQGKEDKRLAYLMYI 524
Query: 327 LQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 386
+ + E+ I+F + HR+ + G +K E G Q R + ++AFR GK
Sbjct: 525 CEKIYTERVIIFFRQKKEAHRVRVVFALCG---LKASELHGNMSQEQRIQAVEAFRSGKS 581
Query: 387 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 446
L+++D +RG+D++ V+ V+NY+ P + Y+HR GRTARAG+ GR TL + + K
Sbjct: 582 SYLLATDVASRGLDIKNVSTVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKV 641
Query: 447 FKKLLQKADNDSCPIHS 463
K+ ++++ + + S
Sbjct: 642 VKQAVKQSRDQGSKVVS 658
>sp|P25888|RHLE_ECOLI ATP-dependent RNA helicase RhlE OS=Escherichia coli (strain K12)
GN=rhlE PE=1 SV=3
Length = 454
Score = 144 bits (362), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 125/429 (29%), Positives = 197/429 (45%), Gaps = 80/429 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G P+Q Q+ I L RDL ++ TG+GKT + LP++Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHL 63
Query: 95 SNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
R R +RAL++ PTR+LA Q+ G V S I L+
Sbjct: 64 ITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSLV 108
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETD 207
+ G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE D
Sbjct: 109 ----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEAD 159
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267
R+L G + IRR + K +
Sbjct: 160 RML--------------------------------DMGFIHDIRRVLTKLPAKRQ----- 182
Query: 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 183 -NLLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIR 297
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE---V 444
VLV++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE +
Sbjct: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
Query: 445 KRFKKLLQK 453
+ +KLL+K
Sbjct: 358 RDIEKLLKK 366
>sp|Q99PT0|DDX52_RAT Probable ATP-dependent RNA helicase DDX52 OS=Rattus norvegicus
GN=Ddx52 PE=2 SV=1
Length = 598
Score = 142 bits (359), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 126/448 (28%), Positives = 199/448 (44%), Gaps = 70/448 (15%)
Query: 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSP 77
P ++ F+ LD + PRL LQN+ + + F V + + I L R+L ++P
Sbjct: 158 PDPIATFQQ--LDQEYKISPRL---LQNI-LDAGFQVPTPIQMQAIPVMLHGRELLASAP 211
Query: 78 TGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVG 137
TGSGKTL++++PI+ L + RALV+ PTR+LA Q+ I+ G + + +
Sbjct: 212 TGSGKTLAFSIPILMQLKQPTNKGFRALVISPTRELASQIHRELIKISEGTGFRIHM-IH 270
Query: 138 QSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR-GFTLE 196
+++IA + + P+ DILV TP RL+ + G L
Sbjct: 271 KAAIAAK--------------KFGPKS-----SKKFDILVTTPNRLIYLLKQEPPGIDLT 311
Query: 197 HLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSD--ASTFLPSAFGSLKTIRRCG 254
+ +LVVDE+D+L D + F D AS FL
Sbjct: 312 SVEWLVVDESDKLF----------------EDGKTGFRDQLASIFLACT----------- 344
Query: 255 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC 314
P++ + + SAT D + +L+L + + ++ G R E +E L
Sbjct: 345 ---------SPKVRRAMFSATFAYDVEQWCKLNLDNIVSVSIG-ARNSAVETVEQELLFV 394
Query: 315 ESKL-KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSV 373
S+ K L + L++ +VF S+E L L + G I + + Q
Sbjct: 395 GSETGKLLAMRELVKKGFNPPVLVFVQSIERAKELFHELIYEG---INVDVIHAERTQQQ 451
Query: 374 RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 433
R T+ +FR GKI VL+ + + RG+D +GVN V+NYD P YIHR GRT RAG G
Sbjct: 452 RDNTVHSFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNRG 511
Query: 434 RCFTLLHKDEVKRFKKLLQKADNDSCPI 461
+ T +D+ + + CP+
Sbjct: 512 KAVTFFTEDDKPLLRSVANVIQQAGCPV 539
>sp|Q6AZV7|DDX55_XENLA ATP-dependent RNA helicase DDX55 OS=Xenopus laevis GN=ddx55 PE=2
SV=1
Length = 594
Score = 142 bits (357), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 135/486 (27%), Positives = 218/486 (44%), Gaps = 97/486 (19%)
Query: 30 DHLPC-LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL 88
D LP L+ ++ L+ + + + PVQ A TI + +D+ + TGSGKTL++ +
Sbjct: 10 DSLPQKLNGSIRRTLEELKFTHMTPVQSA----TIPLFMNNKDIAAEAITGSGKTLAFVI 65
Query: 89 PIVQTLSNRAVRCLR----ALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIAD 143
P+++ L R + + AL++ PTR+LA+Q+ +V + S L +G S+ D
Sbjct: 66 PLLEILLKREEKLKKNQVGALIITPTRELAVQIDEVLSCFTKHFPQFSQILLIGGSNPVD 125
Query: 144 EISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHI-NATRGFTL----EHL 198
DV + + +I+VATPGRL D G L + L
Sbjct: 126 --------------------DVRKFKEHGGNIIVATPGRLEDMFRRQADGLDLVICVKTL 165
Query: 199 CYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERG 258
L++DE DRLL ++A + T+L FLP RR G
Sbjct: 166 DVLILDEADRLLDMGFEASINTIL---------------GFLPKQ-------RRTG---- 199
Query: 259 FKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE------TRYKLPERLESYKL 312
+ SAT TQ+ L + L +P+ + E + K P RL++Y +
Sbjct: 200 ------------LFSATQTQELENLVRAGLRNPVRIAVKEKGVAATSTQKTPIRLQNYYM 247
Query: 313 ICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGL--- 368
IC++ K L+A LQ +EK +VF S+ C + ++G+ L + +K +
Sbjct: 248 ICKADEKFNKLIAFLQKRKQEKHLVFFST-------CACVEYYGKALEMLLKPVKVMCIH 300
Query: 369 -QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 427
+ + R++ FR+ +LV +D M RG+D+ VN VV YD P+ ++HR GRTA
Sbjct: 301 GKMKHKRNRIFTEFRKINSGILVCTDVMARGIDIHEVNWVVQYDPPSSASAFVHRCGRTA 360
Query: 428 RAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIE-SLRPVYKSVRGGISDE 486
R G G L E L + N CP+ + +I L P K++ +D
Sbjct: 361 RIGHHGSALVFLLPMEESYVSFL---SINQKCPLQEMTELIISVDLLPKLKAM--AETDR 415
Query: 487 AFWKVG 492
A ++ G
Sbjct: 416 AVFEKG 421
>sp|P0CQ82|DBP4_CRYNJ ATP-dependent RNA helicase DBP4 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=DBP4 PE=3 SV=1
Length = 859
Score = 141 bits (355), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 121/431 (28%), Positives = 195/431 (45%), Gaps = 72/431 (16%)
Query: 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSP 77
P +++LF + P+ + + L++ + P+Q I P L RD+ ++
Sbjct: 56 PSEITLFSELPMSS------KTQKGLKSSHFLNPTPIQSLA----IPPALQARDILGSAK 105
Query: 78 TGSGKTLSYALPIVQTLSNRA---VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGL 134
TGSGKTL++ +P+++ L + L A+V+ PTR+LA+Q I S GL
Sbjct: 106 TGSGKTLAFLIPLLERLYLEKWGPMDGLGAVVISPTRELAVQTFMQLRDIGKYHNFSAGL 165
Query: 135 AVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194
+G + +E QE ++IL+ATPGRL+ H+++T GF
Sbjct: 166 VIGGKPLKEE----------------------QERLGRMNILIATPGRLLQHLDSTVGFD 203
Query: 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCG 254
+ LV+DE DRLL + L ++ + FS T A GS
Sbjct: 204 SSAVKVLVLDEADRLLDLGFLPALKAIV--------SHFSPVQT----APGS-------- 243
Query: 255 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYK--LPERLESYKL 312
P ++ SAT ++D LA+L L+ PL+++ + + +P LE Y
Sbjct: 244 ---------RPSRQTLLFSATQSKDLAALAKLSLYEPLYISCNKPGEEGVMPANLEQYYA 294
Query: 313 IC--ESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELR--IKIKEYSGL 368
+ E KL L+ ++S + K IVF +S + R+ + F L + + G
Sbjct: 295 VVPLERKLDALW--GFVKSHLKMKGIVFVTSGKQARRVRFIFETFRRLHPGLPLMHLHGK 352
Query: 369 QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 428
Q+Q R + F K +L+ +D RG+D V+ V+ D P + TYIHR GRTAR
Sbjct: 353 QKQPTRLDIFQRFSSSKSALLICTDVAARGLDFPAVDWVIQLDCPDDVDTYIHRVGRTAR 412
Query: 429 AGQLGRCFTLL 439
G T+L
Sbjct: 413 YQSAGTALTIL 423
>sp|P0CQ83|DBP4_CRYNB ATP-dependent RNA helicase DBP4 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=DBP4 PE=3 SV=1
Length = 859
Score = 141 bits (355), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 121/431 (28%), Positives = 195/431 (45%), Gaps = 72/431 (16%)
Query: 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSP 77
P +++LF + P+ + + L++ + P+Q I P L RD+ ++
Sbjct: 56 PSEITLFSELPMSS------KTQKGLKSSHFLNPTPIQSLA----IPPALQARDILGSAK 105
Query: 78 TGSGKTLSYALPIVQTLSNRA---VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGL 134
TGSGKTL++ +P+++ L + L A+V+ PTR+LA+Q I S GL
Sbjct: 106 TGSGKTLAFLIPLLERLYLEKWGPMDGLGAVVISPTRELAVQTFMQLRDIGKYHNFSAGL 165
Query: 135 AVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194
+G + +E QE ++IL+ATPGRL+ H+++T GF
Sbjct: 166 VIGGKPLKEE----------------------QERLGRMNILIATPGRLLQHLDSTVGFD 203
Query: 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCG 254
+ LV+DE DRLL + L ++ + FS T A GS
Sbjct: 204 SSAVKVLVLDEADRLLDLGFLPALKAIV--------SHFSPVQT----APGS-------- 243
Query: 255 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYK--LPERLESYKL 312
P ++ SAT ++D LA+L L+ PL+++ + + +P LE Y
Sbjct: 244 ---------RPSRQTLLFSATQSKDLAALAKLSLYEPLYISCNKPGEEGVMPANLEQYYA 294
Query: 313 IC--ESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELR--IKIKEYSGL 368
+ E KL L+ ++S + K IVF +S + R+ + F L + + G
Sbjct: 295 VVPLERKLDALW--GFVKSHLKMKGIVFVTSGKQARRVRFIFETFRRLHPGLPLMHLHGK 352
Query: 369 QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 428
Q+Q R + F K +L+ +D RG+D V+ V+ D P + TYIHR GRTAR
Sbjct: 353 QKQPTRLDIFQRFSSSKSALLICTDVAARGLDFPAVDWVIQLDCPDDVDTYIHRVGRTAR 412
Query: 429 AGQLGRCFTLL 439
G T+L
Sbjct: 413 YQSAGTALTIL 423
>sp|Q6BJX6|DHH1_DEBHA ATP-dependent RNA helicase DHH1 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=DHH1 PE=3 SV=2
Length = 516
Score = 140 bits (354), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 127/449 (28%), Positives = 197/449 (43%), Gaps = 79/449 (17%)
Query: 24 FEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKT 83
FED PL L + + G PVQ +E+I L RD+ + G+GKT
Sbjct: 32 FEDFPLKR------ELLMGIFEAGFEKPSPVQ----EESIPMALAGRDILARAKNGTGKT 81
Query: 84 LSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIAD 143
S+ +P +Q + V ++AL+++PTR+LALQ V + +GL + G +S+ D
Sbjct: 82 ASFVIPCLQQARPK-VNKIQALILVPTRELALQTSQVVRTLGKHLGLQCMVTTGGTSLRD 140
Query: 144 EISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVV 203
+I L DP V +LV TPGR++D + + + L V+
Sbjct: 141 DILRL-----------NDP----------VHVLVGTPGRVLD-LASRKVADLSECPLFVM 178
Query: 204 DETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKP 263
DE D++L ++ + +L F P+ SL
Sbjct: 179 DEADKMLSREFKGIIEQIL---------------AFFPTTRQSL-----------LFSAT 212
Query: 264 YPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYL 323
+P VK + LT K +++L L L Y E E KL C L
Sbjct: 213 FPLAVKSFMDQHLT----KPYEINLMDELTLRGISQFYAFVE--EKQKLHC--------L 258
Query: 324 VALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 383
L L + I+F + ST+R+ L EL Q R+K FR+
Sbjct: 259 NTLFSKLQINQAIIFCN---STNRVELLAKKITELGYSCYYSHAKMPQHARNKVFHEFRQ 315
Query: 384 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443
GK++VLV SD +TRG+D++ VN V+N+D P +TY+HR GR+ R G LG L+ ++
Sbjct: 316 GKVRVLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLMSWND 375
Query: 444 VKRFKKLLQKADNDSCPIHSIPSSLIESL 472
K+ Q+ + I IP+++ +SL
Sbjct: 376 RYNLYKIEQELGTE---IKPIPATIDKSL 401
>sp|Q6BGU8|DBP8_DEBHA ATP-dependent RNA helicase DBP8 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=DBP8 PE=3 SV=2
Length = 441
Score = 140 bits (354), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 120/417 (28%), Positives = 192/417 (46%), Gaps = 71/417 (17%)
Query: 39 LKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCIN-SPTGSGKTLSYALPIVQTLSNR 97
L AL +M I + +Q A P + + CI + TGSGKT+++A P++ S
Sbjct: 12 LSEALNSMKIHTPTTIQSACI-----PKILKGHDCIGGAKTGSGKTIAFAAPMLTQWSED 66
Query: 98 AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAG 157
+ LV+ PTR+LALQ+ + FAA+ ++ + V + VG I + EL +RP
Sbjct: 67 P-SGIYGLVLTPTRELALQIAEQFAALGSSMNIKVSVIVGGEDIVKQALELQRRPHF--- 122
Query: 158 ICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT---LEHLCYLVVDETDRLLREAY 214
+VATPGRL DHI + T L + YL++DE DRLL ++
Sbjct: 123 ------------------VVATPGRLADHILNSGEDTVCGLRRVKYLILDEADRLLSNSF 164
Query: 215 QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274
L + S ++ + T L +A T+ R KD+P P+
Sbjct: 165 GGDLERCFNILPSTDKRQ-----TLLFTA-----TV--TDAVRALKDRPVPK-------- 204
Query: 275 TLTQDPNKLAQLDLHHPLFLTTGET--RYKLPERLESYKLICESKLKPLYLVALLQ--SL 330
KL P+F+ ET + +P L + S +K YL ++L
Sbjct: 205 ------GKL-------PVFIHEVETVDKVAIPSTLSVKYVFVPSYVKEAYLHSILNLPQY 251
Query: 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 390
+ I+FT+ + L L +L ++ Q+ R+ +L F+ G ++L+
Sbjct: 252 SDSLSIIFTNRTATAELLRRTLR---KLEFRVASLHSEMPQTERTNSLHRFKAGAAKILI 308
Query: 391 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 447
++D +RG+D+ V VVNYD PA +IHR GRTARAG+ G +++ + +V R
Sbjct: 309 ATDVASRGLDIPTVELVVNYDIPADADDFIHRVGRTARAGRKGDAISIVAEKDVDRI 365
>sp|P93008|RH21_ARATH DEAD-box ATP-dependent RNA helicase 21 OS=Arabidopsis thaliana
GN=RH21 PE=2 SV=1
Length = 733
Score = 139 bits (349), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 117/412 (28%), Positives = 187/412 (45%), Gaps = 60/412 (14%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS------ 95
A++ G P+Q+A I GL +RD+ + TGSGKT ++ LP++ +S
Sbjct: 327 AVERAGYKKPSPIQMAA----IPLGLQQRDVIGIAETGSGKTAAFVLPMLAYISRLPPMS 382
Query: 96 -NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
A+V+ PTR+LA Q+++ A +G V VG SI
Sbjct: 383 EENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIE------------ 430
Query: 155 EAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY 214
E G+ ++ +I++ATPGRL+D + R L Y+V+DE DR++ +
Sbjct: 431 EQGL---------KITQGCEIVIATPGRLIDCLE-RRYAVLNQCNYVVLDEADRMIDMGF 480
Query: 215 QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274
+ + VL S N K I R + SA
Sbjct: 481 EPQVAGVLDAMPSSN------LKPENEEEELDEKKIYRT---------------TYMFSA 519
Query: 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEK 334
T+ +LA+ L +P+ +T G T K + + + ++ + K L LL LGE+
Sbjct: 520 TMPPGVERLARKYLRNPVVVTIG-TAGKTTDLISQHVIMMKESEKFFRLQKLLDELGEKT 578
Query: 335 CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394
IVF ++ ++ + L+ G ++ G + Q R +L+ FR + VLV++D
Sbjct: 579 AIVFVNTKKNCDSIAKNLDKAG---YRVTTLHGGKSQEQREISLEGFRAKRYNVLVATDV 635
Query: 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG--RCFTLLHKDEV 444
+ RG+D+ V +V+NYD P +I+ Y HR GRT RAG+ G F LH EV
Sbjct: 636 VGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRAGKSGVATSFLTLHDTEV 687
>sp|A1CTZ2|DBP4_ASPCL ATP-dependent RNA helicase dbp4 OS=Aspergillus clavatus (strain
ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1)
GN=dbp4 PE=3 SV=1
Length = 823
Score = 138 bits (347), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 118/420 (28%), Positives = 183/420 (43%), Gaps = 68/420 (16%)
Query: 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV---RCLRAL 105
SS F + I L RD+ + TGSGKTL++ +P+++ L R L AL
Sbjct: 66 SSHFKTLTDIQSRAISHALKGRDVLGAAKTGSGKTLAFLVPVLENLYRRQWAEHDGLGAL 125
Query: 106 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 165
++ PTR+LA+Q+ +V I S GL +G S+ +E
Sbjct: 126 ILSPTRELAIQIFEVLRKIGRYHTFSAGLVIGGKSLREE--------------------- 164
Query: 166 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 225
QE ++ILV TPGR++ H++ T F +L LV+DE DR+L +Q + ++
Sbjct: 165 -QERLGRMNILVCTPGRMLQHLDQTALFDTYNLQMLVLDEADRILDLGFQQTVDAIV--- 220
Query: 226 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 285
G L R+ ++ SAT T+ + LA+
Sbjct: 221 -------------------GHLPKERQT----------------LLFSATQTKKVSDLAR 245
Query: 286 LDLHHPLFLTTGET-RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 344
L L P ++ ET P +L+ + +I K L + ++S + K +VF SS +
Sbjct: 246 LSLRDPEYVAVHETASTATPAKLQQHYVIAPLPQKLDILWSFIRSNLKSKTMVFFSSGKQ 305
Query: 345 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 404
+ H + I + G Q+Q R + F + K VL S+D RG+D V
Sbjct: 306 VRFVYESFRHM-QPGIPLMHLHGRQKQGGRLDIMTNFSQAKHCVLFSTDVAARGLDFPAV 364
Query: 405 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSI 464
+ V+ D P TYIHR GRTAR G+ GR L E + +L++ + PI I
Sbjct: 365 DWVIQMDCPEDADTYIHRVGRTARYGRDGRAVLFLDPSEE---EGMLKRLEQKKVPIEKI 421
>sp|A5DLE0|DBP8_PICGU ATP-dependent RNA helicase DBP8 OS=Meyerozyma guilliermondii
(strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC
10279 / NRRL Y-324) GN=DBP8 PE=3 SV=2
Length = 433
Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 123/413 (29%), Positives = 184/413 (44%), Gaps = 69/413 (16%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101
AL M I S +Q E I L RD + TGSGKT+++A P++ S
Sbjct: 15 ALAAMKIRSPTSIQA----ECIPQILAGRDCIGGAKTGSGKTIAFAAPMMTKWSEDPF-G 69
Query: 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD 161
+ LV+ PTR+LALQ+ + F A+ ++ + V + VG + + E+ K P
Sbjct: 70 IYGLVLTPTRELALQIAEQFLALGASMNIKVAVVVGGEDMVKQALEIQKSPHF------- 122
Query: 162 PEDVLQELQSAVDILVATPGRLMDHINATRGFT---LEHLCYLVVDETDRLLREAYQAWL 218
++ATPGRL DHI + T L+ + +LV+DE DRLL ++ + L
Sbjct: 123 --------------IIATPGRLADHILNSGDDTVGGLKRIKFLVLDEADRLLSNSFGSDL 168
Query: 219 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ 278
++ DAS F + T R KDKP P K
Sbjct: 169 ERCFKI--------LPDASKRQTLLFTATVT----DAVRALKDKPVPEGKK--------- 207
Query: 279 DPNKLAQLDLHHPLFL--TTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKC- 335
P+F+ + + +P L + S +K YL +L S EK
Sbjct: 208 ------------PVFIHEIVSKDQVAIPATLTISYVFVPSYVKEAYLHNILVSPKYEKAS 255
Query: 336 -IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394
IVF V T+ L +L I++ QS R+ +L FR G +VL+++D
Sbjct: 256 AIVF---VNRTYTAEILRRTLRKLDIRVASLHSEMPQSERTNSLHRFRAGAARVLIATDV 312
Query: 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 447
+RG+D+ V VVN D PA YIHR GRTARAG+ G +++ + +V+R
Sbjct: 313 ASRGLDIPNVELVVNQDIPADPDDYIHRVGRTARAGKKGGSVSIVSEKDVERI 365
>sp|Q2UHB7|DBP4_ASPOR ATP-dependent RNA helicase dbp4 OS=Aspergillus oryzae (strain ATCC
42149 / RIB 40) GN=dbp4 PE=3 SV=1
Length = 796
Score = 136 bits (343), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 120/421 (28%), Positives = 182/421 (43%), Gaps = 70/421 (16%)
Query: 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR---CLRAL 105
SS F + IG L RD+ + TGSGKTL++ +P+++ L + L AL
Sbjct: 62 SSHFKTLTDIQSRAIGHALKGRDILGAAKTGSGKTLAFLIPVLENLYRKQWSEHDGLGAL 121
Query: 106 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 165
++ PTR+LA+Q+ +V I S GL +G S+ +E
Sbjct: 122 ILSPTRELAIQIFEVLRKIGRYHTFSAGLIIGGKSLKEE--------------------- 160
Query: 166 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 225
QE ++ILV TPGR++ H++ T F + +L LV+DE DR+L +Q + ++
Sbjct: 161 -QERLGRMNILVCTPGRMLQHLDQTAMFDVFNLQMLVLDEADRILDMGFQKTVDAIV--- 216
Query: 226 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 285
G L R+ ++ SAT T+ + LA+
Sbjct: 217 -------------------GHLPKERQT----------------LLFSATQTKKVSDLAR 241
Query: 286 LDLHHPLFLTTGET-RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 344
L L P ++ ET P L+ + ++ K L + ++S + K IVF SS +
Sbjct: 242 LSLQDPEYVAVHETASSATPSTLQQHYVVTPLSQKLDVLWSFIRSNLKAKTIVFLSSGKQ 301
Query: 345 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 404
+ H + I + G Q+Q R F + K VL S+D RG+D V
Sbjct: 302 VRFVYESFRHL-QPGIPLMHLHGRQKQGGRLDITAKFSQAKHAVLFSTDITARGLDFPAV 360
Query: 405 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH-KDEVKRFKKLLQKADNDSCPIHS 463
+ V+ D P TYIHR GRTAR + GR L +E K+L QK PI
Sbjct: 361 DWVIQMDCPEDADTYIHRVGRTARYERDGRAVLFLDPSEESGMLKRLEQK----KVPIER 416
Query: 464 I 464
I
Sbjct: 417 I 417
>sp|Q6BP45|ROK1_DEBHA ATP-dependent RNA helicase ROK1 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=ROK1 PE=3 SV=2
Length = 550
Score = 136 bits (342), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 125/452 (27%), Positives = 204/452 (45%), Gaps = 82/452 (18%)
Query: 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSP 77
P+ + FED + LD +L L + G + P+Q E I L RDL +P
Sbjct: 106 PLPIGSFEDLIGRY--KLDKKLLSNLIDAGFTEPTPIQ----DEAIPISLEGRDLIACAP 159
Query: 78 TGSGKTLSYALPIVQTL--SNRAVRC--LRALVVLPTRDLALQVKDVFAAIAPAVGLSVG 133
TGSGKTL++ +P+VQT+ SN V+ +R L++ PT +LA+Q+ + + +G
Sbjct: 160 TGSGKTLAFLIPLVQTILQSNPNVKNYGIRGLIISPTNELAVQIFQELNTMTKGKKMKIG 219
Query: 134 LAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193
+ Q +A++I+ I S DILV+TP RL+D I
Sbjct: 220 ILSKQ--LANKINNKIIN------------------SSKYDILVSTPLRLIDSI-KNETI 258
Query: 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRC 253
+L + LV+DETD+L + + +L ++ + R S S +PS
Sbjct: 259 SLSKVEQLVIDETDKLFDQGFVEQTDEILS-NCTNTKLRKSMFSATIPS----------- 306
Query: 254 GVERGFKDKPYPRLVKMVLSATLTQDP------NKLAQLDLHHPLFLTTGETRYKLPERL 307
GVE ++ ++ +DP +K A + + TG KL L
Sbjct: 307 GVEE--------------MAQSIMKDPIRVIIGHKEAASNTIEQKLVFTGNEEGKL---L 349
Query: 308 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 367
++I + + KP ++ LQS+ K + H L + L + +
Sbjct: 350 AIRQMIQQGEFKPPIII-FLQSITRAKALF--------HELL-----YDRLNVDVIHAER 395
Query: 368 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 427
+Q R + +K F+ G I VL+++D + RG+D +GVN V+NYD P + Y+HR GRT
Sbjct: 396 TPKQ--RDEVIKRFKSGDIWVLITTDVIARGVDFKGVNLVINYDVPQSAQAYVHRIGRTG 453
Query: 428 RAGQLGRCFTLLHKDEVKRFKKLLQKADNDSC 459
R G+ G+ T K++ K K ++ C
Sbjct: 454 RGGKAGKAVTFFTKEDDKAVKPIINVMKQSGC 485
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 190,619,916
Number of Sequences: 539616
Number of extensions: 7865117
Number of successful extensions: 25458
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1283
Number of HSP's successfully gapped in prelim test: 188
Number of HSP's that attempted gapping in prelim test: 20068
Number of HSP's gapped (non-prelim): 2773
length of query: 530
length of database: 191,569,459
effective HSP length: 122
effective length of query: 408
effective length of database: 125,736,307
effective search space: 51300413256
effective search space used: 51300413256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)